RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5339
(479 letters)
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1. Amn1
has been functionally characterized in Saccharomyces
cerevisiae as a component of the Antagonist of MEN
pathway (AMEN). The AMEN network is activated by MEN
(mitotic exit network) via an active Cdc14, and in turn
switches off MEN. Amn1 constitutes one of the
alternative mechanisms by which MEN may be disrupted.
Specifically, Amn1 binds Tem1 (Termination of M-phase, a
GTPase that belongs to the RAS superfamily), and
disrupts its association with Cdc15, the primary
downstream target. Amn1 is a leucine-rich repeat (LRR)
protein, with 12 repeats in the S. cerevisiae ortholog.
As a negative regulator of the signal transduction
pathway MEN, overexpression of AMN1 slows the growth of
wild type cells. The function of the vertebrate members
of this family has not been determined experimentally,
they have fewer LRRs that determine the extent of this
model.
Length = 226
Score = 102 bits (256), Expect = 6e-25
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 8/178 (4%)
Query: 59 LIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT 118
L+ L +L L C S C++LK+L + + D GL LA+
Sbjct: 22 LLRILHSGLEWLELYMCPISD--PPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPN 79
Query: 119 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLN---ARGCEAVSDDAITVLARSCTRLRALD 175
L+ L + C+ ++D+G+ +A C KL+ +N R ++D +++ L ++CT L+ +
Sbjct: 80 LQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVG 139
Query: 176 IGKCDVSDAGLRALAESC-PNIKKLSLRQCDLVTDRGVQCIAY--YCRGLQQLNIQDC 230
CDV+D G+ LA C ++++LSL C +TD+ + I Y L L + C
Sbjct: 140 FAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGC 197
Score = 102 bits (256), Expect = 6e-25
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 8/178 (4%)
Query: 281 LIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT 340
L+ L +L L C S C++LK+L + + D GL LA+
Sbjct: 22 LLRILHSGLEWLELYMCPISD--PPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPN 79
Query: 341 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLN---ARGCEAVSDDAITVLARSCTRLRALD 397
L+ L + C+ ++D+G+ +A C KL+ +N R ++D +++ L ++CT L+ +
Sbjct: 80 LQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVG 139
Query: 398 IGKCDVSDAGLRALAESC-PNIKKLSLRQCDLVTDRGVQCIAY--YCRGLQQLNIQDC 452
CDV+D G+ LA C ++++LSL C +TD+ + I Y L L + C
Sbjct: 140 FAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGC 197
Score = 81.2 bits (201), Expect = 1e-17
Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 27/193 (13%)
Query: 145 LRYLNARGCEAVSDDAITVLARSCTRLRALDIGKC-DVSDAGLRALAESCPNIKKLSLRQ 203
L +L C +SD + L+ C +L+ L + + D GL ALA+SCPN++ L LR
Sbjct: 30 LEWLELYMC-PISDPPLDQLSN-CNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRA 87
Query: 204 CDLVTDRGVQCIAYYCRGLQQLNIQDCQ----ISVEGYRAVKKYCKRCCIQISCLTASPT 259
C+ +TD G+ +A C LQ +N+ + I+ A+ K C
Sbjct: 88 CENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTF------------- 134
Query: 260 QLLLQFLDLTDCSNVDDQGLSLIVSNC-PQLIYLYLRRCVKLTDIGIKYV--PSFCSQLK 316
LQ + C +V D+G+ + S C L L L C LTD I + ++ L
Sbjct: 135 ---LQTVGFAGC-DVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLS 190
Query: 317 ELSVSDCTQVTDF 329
L C +TDF
Sbjct: 191 VLEFRGCPLITDF 203
Score = 73.9 bits (182), Expect = 5e-15
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 313 SQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNA 372
S + +L + + LY L LS C KL+ L
Sbjct: 17 SNISQLLRILHSGLEWLELYMCPISDPPLDQLS-----------------NCNKLKKLIL 59
Query: 373 RGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAESCPNIKKLSL---RQCDL 428
G + + D+ + LA+SC L+ LD+ C+ ++D+G+ ALA +CP ++ ++L R L
Sbjct: 60 PGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHL 119
Query: 429 VTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYC 466
+TD + + C LQ + C ++ +G + C
Sbjct: 120 ITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGC 157
Score = 49.2 bits (118), Expect = 1e-06
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 385 VLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGL 444
+L + L L++ C +SD L L+ +C +KKL L L+ D G+ +A C L
Sbjct: 22 LLRILHSGLEWLELYMCPISDPPLDQLS-NCNKLKKLILPGSKLIDDEGLIALAQSCPNL 80
Query: 445 QQLNIQDC-QISVEGYRAVKKYCKR 468
Q L+++ C I+ G A+ C +
Sbjct: 81 QVLDLRACENITDSGIVALATNCPK 105
>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing)
subfamily.
Length = 26
Score = 36.6 bits (86), Expect = 7e-04
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 90 CSQLKELSVSDCTQVTDFGLYELAKL 115
C L+EL +S CT +TD GL LAK
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALAKG 26
Score = 36.6 bits (86), Expect = 7e-04
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 312 CSQLKELSVSDCTQVTDFGLYELAKL 337
C L+EL +S CT +TD GL LAK
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALAKG 26
Score = 35.8 bits (84), Expect = 0.001
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 193 CPNIKKLSLRQCDLVTDRGVQCIA 216
CPN+++L L C +TD G+Q +A
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALA 24
Score = 35.8 bits (84), Expect = 0.001
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 415 CPNIKKLSLRQCDLVTDRGVQCIA 438
CPN+++L L C +TD G+Q +A
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALA 24
Score = 28.1 bits (64), Expect = 0.57
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 168 CTRLRALDIGKCD-VSDAGLRALAES 192
C LR LD+ C ++D GL+ALA+
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALAKG 26
Score = 28.1 bits (64), Expect = 0.57
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 390 CTRLRALDIGKCD-VSDAGLRALAES 414
C LR LD+ C ++D GL+ALA+
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALAKG 26
Score = 26.2 bits (59), Expect = 2.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 64 CPQLIYLYLRRCVKLTDIGI 83
CP L L L C +TD G+
Sbjct: 1 CPNLRELDLSGCTNITDEGL 20
Score = 26.2 bits (59), Expect = 2.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 286 CPQLIYLYLRRCVKLTDIGI 305
CP L L L C +TD G+
Sbjct: 1 CPNLRELDLSGCTNITDEGL 20
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 39.6 bits (93), Expect = 0.002
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 90 CSQLKELSVSDCT-QVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIAR----RCYK 144
L+EL +SD G+ E ++L+ L + + D GL+++A+
Sbjct: 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPA 138
Query: 145 LRYLNARGC--EAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCP---NIKKL 199
L L E S +A+ R+ L+ L++ + DAG+RALAE N++ L
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198
Query: 200 SLRQCDLVTDRGVQCIAY---YCRGLQQLNIQDCQISVEGYRAVKK 242
L L TD G +A + L+ LN+ D ++ G A+
Sbjct: 199 DLNNNGL-TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243
Score = 39.6 bits (93), Expect = 0.002
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 312 CSQLKELSVSDCT-QVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIAR----RCYK 366
L+EL +SD G+ E ++L+ L + + D GL+++A+
Sbjct: 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPA 138
Query: 367 LRYLNARGC--EAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCP---NIKKL 421
L L E S +A+ R+ L+ L++ + DAG+RALAE N++ L
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198
Query: 422 SLRQCDLVTDRGVQCIAY---YCRGLQQLNIQDCQISVEGYRAVKK 464
L L TD G +A + L+ LN+ D ++ G A+
Sbjct: 199 DLNNNGL-TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243
Score = 37.3 bits (87), Expect = 0.013
Identities = 68/297 (22%), Positives = 118/297 (39%), Gaps = 61/297 (20%)
Query: 171 LRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVT------DRGVQCIAYY---CRG 221
L+ L + + + +ALA + + SL++ L RG+Q + G
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALR--PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82
Query: 222 LQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSL 281
LQ+L++ D + +G ++ S L +S LQ L L + + D+GL L
Sbjct: 83 LQELDLSDNALGPDGCGVLE----------SLLRSSS----LQELKLNNNG-LGDRGLRL 127
Query: 282 IV----SNCPQLIYLYLRRCVKLTDIG---IKYVPSFCSQLKELSVSDCTQVTDFGLYEL 334
+ P L L L R +L + LKEL++++ + D G+ L
Sbjct: 128 LAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLAN-NGIGDAGIRAL 185
Query: 335 AKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLR 394
A+ ++ L+V+ L N E S A T+ + L
Sbjct: 186 AEGLK-------------ANCNLEVL-----DLN-NNGLTDEGASALAETLASLKS--LE 224
Query: 395 ALDIGKCDVSDAGLRALAESCPN----IKKLSLRQCDLVTDRGVQCIAYYCRGLQQL 447
L++G +++DAG ALA + + + LSL D+ TD G + +A + L
Sbjct: 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI-TDDGAKDLAEVLAEKESL 280
Score = 37.3 bits (87), Expect = 0.013
Identities = 56/222 (25%), Positives = 83/222 (37%), Gaps = 28/222 (12%)
Query: 5 SCLTASPTQLLLQFLDLTDCS-----CIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSL 59
S L LQ LDL+D + C + L S + LQ L L + + D+GL L
Sbjct: 72 SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS---LQELKLNNNG-LGDRGLRL 127
Query: 60 IV----SNCPQLIYLYLRRCVKLTDIG---IKYVPSFCSQLKELSVSDCTQVTDFGLYEL 112
+ P L L L R +L + LKEL++++ + D G+ L
Sbjct: 128 LAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLAN-NGIGDAGIRAL 185
Query: 113 AKLGATLRYLSVAKCD--QVSDAGLKVIA---RRCYKLRYLNARGCEAVSDDAITV---L 164
A+ L V + ++D G +A L LN A + L
Sbjct: 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245
Query: 165 ARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL 206
L L + D++D G + LAE K SL + DL
Sbjct: 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAE--KESLLELDL 285
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 31.4 bits (71), Expect = 1.1
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 165 ARSCTRLRALDIGKC---DVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAY---- 217
A +L + G+ + S AL ES N+K++ ++Q + + GV +A+
Sbjct: 153 AADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLF 211
Query: 218 YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC 271
Y L+ L++QD ++EG R + A LL+ L L DC
Sbjct: 212 YSHSLEVLDLQDNTFTLEGSRYLAD-------------ALCEWNLLRELRLNDC 252
Score = 29.5 bits (66), Expect = 3.8
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 387 ARSCTRLRALDIGKC---DVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAY---- 439
A +L + G+ + S AL ES N+K++ ++Q + + GV +A+
Sbjct: 153 AADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLF 211
Query: 440 YCRGLQQLNIQDCQISVEGYRAVKK-YC 466
Y L+ L++QD ++EG R + C
Sbjct: 212 YSHSLEVLDLQDNTFTLEGSRYLADALC 239
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase
inhibitor.
Length = 537
Score = 31.4 bits (71), Expect = 1.2
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 19/122 (15%)
Query: 8 TASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNC--- 64
LL+ L ++ + ++ +L Q L C V++ S VSN
Sbjct: 1 MGFANFLLILMLLPVHLESLETT-SSSPYQELNFQALIAQACQFVENH--SSCVSNIQAE 57
Query: 65 -----PQLIYLYLRRCVKLT----DIGIKYVPSF----CSQLKELSVSDCTQVTDFGLYE 111
P+ + L +K T + I + F S +++++ DC ++ DF + E
Sbjct: 58 LKKSGPRTPHSVLSAALKATLDEARLAIDMITKFNALSISYREQVAIEDCKELLDFSVSE 117
Query: 112 LA 113
LA
Sbjct: 118 LA 119
>gnl|CDD|179641 PRK03743, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Validated.
Length = 332
Score = 30.7 bits (70), Expect = 1.7
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 199 LSLRQ-CDLVT-DRGVQCIAYYCRGLQQLNIQDCQISVEG 236
+SL++ CD VT +R + I + L++L I++ +I+V G
Sbjct: 170 VSLKKACDYVTKERVLDYIQRCTKALEKLGIKNPKIAVAG 209
Score = 30.7 bits (70), Expect = 1.7
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 421 LSLRQ-CDLVT-DRGVQCIAYYCRGLQQLNIQDCQISVEG 458
+SL++ CD VT +R + I + L++L I++ +I+V G
Sbjct: 170 VSLKKACDYVTKERVLDYIQRCTKALEKLGIKNPKIAVAG 209
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 30.7 bits (69), Expect = 1.8
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 34/170 (20%)
Query: 180 DVSDAGLRALA---ESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEG 236
D+SD + +L + PN+K L L DL + + L L++ +IS
Sbjct: 146 DLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD---LPKLLSNLSNLNNLDLSGNKIS--- 199
Query: 237 YRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRR 296
+ + L+ LDL SN L +SN L L L
Sbjct: 200 -------------DLPPEIELLS--ALEELDL---SNNSIIELLSSLSNLKNLSGLEL-S 240
Query: 297 CVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSV 346
KL D+ + + + S L+ L +S Q++ + L L LR L +
Sbjct: 241 NNKLEDL-PESIGN-LSNLETLDLS-NNQISS--ISSLGSL-TNLRELDL 284
>gnl|CDD|205694 pfam13516, LRR_6, Leucine Rich repeat.
Length = 24
Score = 26.8 bits (60), Expect = 1.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 168 CTRLRALDIGKCDVSDAGLRALAE 191
T L +LD+ + D G ALA+
Sbjct: 1 LTNLTSLDLSGNQIGDEGASALAK 24
Score = 26.8 bits (60), Expect = 1.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 390 CTRLRALDIGKCDVSDAGLRALAE 413
T L +LD+ + D G ALA+
Sbjct: 1 LTNLTSLDLSGNQIGDEGASALAK 24
>gnl|CDD|197686 smart00368, LRR_RI, Leucine rich repeat, ribonuclease inhibitor
type.
Length = 28
Score = 27.0 bits (61), Expect = 2.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 169 TRLRALDIGKCDVSDAGLRALAES 192
LR LD+ + D G RALAE+
Sbjct: 2 PSLRELDLSNNKLGDEGARALAEA 25
Score = 27.0 bits (61), Expect = 2.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 391 TRLRALDIGKCDVSDAGLRALAES 414
LR LD+ + D G RALAE+
Sbjct: 2 PSLRELDLSNNKLGDEGARALAEA 25
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 29.7 bits (67), Expect = 4.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 99 SDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARR 141
S C Q DF L K+ LRY++ + +SDA L ++AR+
Sbjct: 168 SRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK 209
Score = 29.7 bits (67), Expect = 4.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 321 SDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARR 363
S C Q DF L K+ LRY++ + +SDA L ++AR+
Sbjct: 168 SRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK 209
>gnl|CDD|223781 COG0709, SelD, Selenophosphate synthase [Amino acid transport and
metabolism].
Length = 346
Score = 28.9 bits (65), Expect = 5.8
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 14/64 (21%)
Query: 77 KLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLY-------ELAKLGATLRYLSVAKCDQ 129
L IG ++ P F V+ T VT FGL E A + A L + D
Sbjct: 208 TLNKIGAQFAPDF-------GVAAMTDVTGFGLLGHLKEMAEGAGVDARLFDSPIPFLDG 260
Query: 130 VSDA 133
V
Sbjct: 261 VEFY 264
Score = 28.9 bits (65), Expect = 5.8
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 14/64 (21%)
Query: 299 KLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLY-------ELAKLGATLRYLSVAKCDQ 351
L IG ++ P F V+ T VT FGL E A + A L + D
Sbjct: 208 TLNKIGAQFAPDF-------GVAAMTDVTGFGLLGHLKEMAEGAGVDARLFDSPIPFLDG 260
Query: 352 VSDA 355
V
Sbjct: 261 VEFY 264
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 28.7 bits (64), Expect = 8.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 43 FLDLTDCSNVDDQGLSLIVSN 63
FL +TDCS V D G L++++
Sbjct: 249 FLRMTDCSQVSDGGAGLVLAS 269
Score = 28.7 bits (64), Expect = 8.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 265 FLDLTDCSNVDDQGLSLIVSN 285
FL +TDCS V D G L++++
Sbjct: 249 FLRMTDCSQVSDGGAGLVLAS 269
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.139 0.428
Gapped
Lambda K H
0.267 0.0890 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,769,330
Number of extensions: 2164757
Number of successful extensions: 2168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2105
Number of HSP's successfully gapped: 47
Length of query: 479
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 378
Effective length of database: 6,457,848
Effective search space: 2441066544
Effective search space used: 2441066544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.0 bits)