RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5339
(479 letters)
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 261 bits (669), Expect = 5e-81
Identities = 88/463 (19%), Positives = 165/463 (35%), Gaps = 52/463 (11%)
Query: 41 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 100
L+ + L V D L LI + L L C + G+ + + C LKEL + +
Sbjct: 107 LEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165
Query: 101 C--TQVTDFGLYELAKLGATLRYLSVAKC-DQVSDAGLKVIARRCYKLRYLNARGCEAVS 157
V+ L +L L+++ +VS + L+ + RC L+ L V
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VP 223
Query: 158 DDAITVLARSCTRLRALDIGKC-----DVSDAGLRALAESCPNIKKLSLRQCDLVTDRGV 212
+ + L + +L L G +GL C ++ LS +
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG--FWDAVPAYL 281
Query: 213 QCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCS 272
+ C L LN+ + + C + LQ L +
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK----------------LQRLWV--LD 323
Query: 273 NVDDQGLSLIVSNCPQLIYLYLRR--------CVKLTDIGIKYVPSFCSQLKELSVSDCT 324
++D GL ++ S C L L + V LT+ G+ V C +L+ + + C
Sbjct: 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCR 382
Query: 325 QVTDFGLYELAKLGATLRYLSVAKCD---------QVSDAGLKVIARRCYKLRYLNARGC 375
Q+T+ L +A+ + + + + D G I C LR L+ G
Sbjct: 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL 442
Query: 376 EAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQ 435
++D + ++ L + SD G+ + C +++KL +R C D+ +
Sbjct: 443 --LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALL 499
Query: 436 CIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCIIEHTNPAF 478
A ++ L + C +S + + + + +E +
Sbjct: 500 ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542
Score = 224 bits (573), Expect = 5e-67
Identities = 95/458 (20%), Positives = 163/458 (35%), Gaps = 56/458 (12%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQL-LLQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLYL 72
+ L L+ C L A L+ LDL + +V LS L+ L +
Sbjct: 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191
Query: 73 RRC-VKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVS 131
+++ ++ + + C LK L ++ V L L + L L
Sbjct: 192 SCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEV 249
Query: 132 D----AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLR 187
+GL V C +LR L+ G + + C+RL L++ V L
Sbjct: 250 RPDVYSGLSVALSGCKELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307
Query: 188 ALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDC---------QISVEGYR 238
L CP +++L + D + D G++ +A C+ L++L + ++ +G
Sbjct: 308 KLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365
Query: 239 AVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC- 297
+V C + L+ + L C + + L I N P + L
Sbjct: 366 SVSMGCPK----------------LESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIE 408
Query: 298 --------VKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKC 349
++ DIG + C L+ LS+S +TD + + LSVA
Sbjct: 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFA 466
Query: 350 DQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLR 409
SD G+ + C LR L R C D A+ A +R+L + C VS +
Sbjct: 467 G-DSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSVSFGACK 524
Query: 410 ALAESCPNIKKLSLRQCDLVTDRGVQCIA---YYCRGL 444
L + P + + + R C + R +
Sbjct: 525 LLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTV 562
Score = 192 bits (489), Expect = 7e-55
Identities = 76/377 (20%), Positives = 140/377 (37%), Gaps = 44/377 (11%)
Query: 116 GATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSD-------------DAIT 162
R + + C VS A + RR K+R + +G +D I
Sbjct: 42 RWCRRKVFIGNCYAVSPATV---IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98
Query: 163 VLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGL 222
++ S T L + + + V+D L +A+S N K L L C+ + G+ IA CR L
Sbjct: 99 AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158
Query: 223 QQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC-SNVDDQGLSL 281
++L++++ + + + L L+++ S V L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTY-------------TSLVSLNISCLASEVSFSALER 205
Query: 282 IVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYEL--AKLGA 339
+V+ CP L L L R V + + QL+EL T +Y L
Sbjct: 206 LVTRCPNLKSLKLNRAV--PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263
Query: 340 TLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIG 399
++ A L + C +L LN V + L C +L+ L +
Sbjct: 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVL 322
Query: 400 KCDVSDAGLRALAESCPNIKKLSLRQCD--------LVTDRGVQCIAYYCRGLQQLNIQD 451
+ DAGL LA +C ++++L + + +T++G+ ++ C L+ +
Sbjct: 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381
Query: 452 CQISVEGYRAVKKYCKR 468
Q++ + +
Sbjct: 382 RQMTNAALITIARNRPN 398
Score = 70.3 bits (172), Expect = 5e-13
Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 12/159 (7%)
Query: 12 TQLLLQFLDLTDCSCIQISCLTASPTQLL-----LQFLDLTDCSNVDDQGLSLIVSNCPQ 66
T+ L ++ + + L ++ L+ L L+ + D+ I + +
Sbjct: 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKK 457
Query: 67 LIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAK 126
+ L + +D+G+ +V S C L++L + DC L A T+R L ++
Sbjct: 458 MEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-ALLANASKLETMRSLWMSS 515
Query: 127 CDQVSDAGLKVIARRCYKL--RYLNARGCEAVSDDAITV 163
C VS K++ ++ KL ++ RG ++ V
Sbjct: 516 C-SVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPV 553
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 243 bits (622), Expect = 4e-74
Identities = 79/457 (17%), Positives = 167/457 (36%), Gaps = 46/457 (10%)
Query: 41 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 100
L+ + D L + L L L +C T G+ + + C ++K L + +
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173
Query: 101 C--TQVTDFGLYELAKLGATLRYLSVA--KCDQVSDAGLKVIARRCYKLRYLNARGCEAV 156
++ L+ELA+ +L L+ + ++S L+ IAR C L + E +
Sbjct: 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233
Query: 157 SDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIA 216
A + + + G+ + +KL + + +
Sbjct: 234 ELVGFFKAAANLEEFCGGSLNEDI----GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289
Query: 217 YYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDD 276
+ +++L++ + E + + + C L+ L+ + + D
Sbjct: 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPN----------------LEVLETRNV--IGD 331
Query: 277 QGLSLIVSNCPQLIYLYLRRCVK----------LTDIGIKYVPSFCSQLKELSVSDCTQV 326
+GL ++ C QL L + R ++ G+ + C +L+ ++V + +
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDI 390
Query: 327 TDFGLYELAKLGATLRYLSVAKC-------DQVSDAGLKVIARRCYKLRYLNAR-GCEAV 378
T+ L + L + D D G++ + C KLR +
Sbjct: 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450
Query: 379 SDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIA 438
+D ++ + + +R + +G SD GL + CPN++KL +R C ++R +
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAV 509
Query: 439 YYCRGLQQLNIQDCQISVEGYRAVKKYCKRCIIEHTN 475
L+ L +Q + S+ G ++ IE
Sbjct: 510 TKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546
Score = 217 bits (553), Expect = 3e-64
Identities = 85/441 (19%), Positives = 170/441 (38%), Gaps = 30/441 (6%)
Query: 16 LQFLDLTDCSCIQ---ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQL--IYL 70
L+ L L CS + + ++ ++ + S D + L + + L +
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199
Query: 71 YLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQV 130
Y+ K++ ++ + C L + V D + G ++ A S+ + +
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM 259
Query: 131 SDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALA 190
+ + R L G + + + +L ++R LD+ + L
Sbjct: 260 PEKYMN-----LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314
Query: 191 ESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQ 250
+ CPN++ L R + DRG++ +A YC+ L++L I+ +R I
Sbjct: 315 QKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372
Query: 251 ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLI---YLYLRRCVKLTDI---- 303
++ L+++ + S++ ++ L I + L + L R ++TD+
Sbjct: 373 LAQGCQE-----LEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426
Query: 304 GIKYVPSFCSQLKELSVS-DCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIAR 362
G++ + C +L+ + +TD GL + + +R++ + SD GL +R
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR 485
Query: 363 RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAG--LRALAESCPNIKK 420
C L+ L RGC S+ AI LR L + S G L +A NI+
Sbjct: 486 GCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544
Query: 421 LSLRQCDLVTDRGVQCIAYYC 441
+ R+ V +G +
Sbjct: 545 IPSRRVPEVNQQGEIREMEHP 565
Score = 194 bits (494), Expect = 1e-55
Identities = 69/412 (16%), Positives = 144/412 (34%), Gaps = 43/412 (10%)
Query: 16 LQFLDLTDCSCIQ-----ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYL 70
++ L + + S + + L T L + +T+ + + + L I NC L+ +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225
Query: 71 YLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQV 130
+ L +G + + S+++ + + R L +
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE-----KYMNLVFPRKLCRLGLSYM 280
Query: 131 SDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALA 190
+ ++ ++R L+ ++D T L + C L L+ + D GL LA
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCT-LIQKCPNLEVLETRNV-IGDRGLEVLA 338
Query: 191 ESCPNIKKLSLRQCD----------LVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAV 240
+ C +K+L + + LV+ RG+ +A C+ L+ + + I+ E ++
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398
Query: 241 KKYCKRC-------CIQISCLTASPTQLL----------LQFLDLT-DCSNVDDQGLSLI 282
Y K + +T P L+ + D GLS I
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458
Query: 283 VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLR 342
P + ++ L +D G+ C L++L + C ++ + +LR
Sbjct: 459 GQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLR 516
Query: 343 YLSVAKCD-QVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRL 393
YL V ++ L +AR + + + +R V+ +
Sbjct: 517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568
Score = 162 bits (412), Expect = 3e-44
Identities = 53/297 (17%), Positives = 108/297 (36%), Gaps = 37/297 (12%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 75
++ LDL T L+ L+ + + D+GL ++ C QL L + R
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERG 352
Query: 76 VK----------LTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVA 125
++ G+ + C +L+ ++V + +T+ L + L +
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLV 411
Query: 126 KC-------DQVSDAGLKVIARRCYKLRYLNAR-GCEAVSDDAITVLARSCTRLRALDIG 177
D D G++ + C KLR ++D ++ + + +R + +G
Sbjct: 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471
Query: 178 KCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGY 237
SD GL + CPN++KL +R C ++R + L+ L +Q + S+ G
Sbjct: 472 YVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530
Query: 238 RAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYL 294
++ I++ + V+ QG + + + Y
Sbjct: 531 DLMQMARPYWNIEL--------------IPSRRVPEVNQQGEIREMEHPAHI-LAYY 572
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 145 bits (367), Expect = 9e-40
Identities = 56/310 (18%), Positives = 109/310 (35%), Gaps = 34/310 (10%)
Query: 109 LYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSC 168
Y LA + + L + + D +++++ R C D S
Sbjct: 39 WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFR------CPRSFMDQPLAEHFSP 92
Query: 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQ 228
R++ +D+ + + L + C ++ LSL L +D V +A L +LN+
Sbjct: 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTLA-KNSNLVRLNLS 150
Query: 229 DC-QISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVS-NC 286
C S + + C R L L+L+ C + ++ + + V+
Sbjct: 151 GCSGFSEFALQTLLSSCSR----------------LDELNLSWCFDFTEKHVQVAVAHVS 194
Query: 287 PQLIYLYLRRCVK-LTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLS 345
+ L L K L + + C L L +SD + + E +L L++LS
Sbjct: 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-LQHLS 253
Query: 346 VAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 405
+++C + L + L+ L G V D + +L + L+ I +
Sbjct: 254 LSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---INCSHFTT 307
Query: 406 AGLRALAESC 415
+
Sbjct: 308 IARPTIGNKK 317
Score = 135 bits (342), Expect = 3e-36
Identities = 54/323 (16%), Positives = 114/323 (35%), Gaps = 33/323 (10%)
Query: 156 VSDDAITVLARSCTRLRALDI-----GKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDR 210
+ + ++ C R L D++ L + + +C
Sbjct: 24 LCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMD 83
Query: 211 GVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTD 270
+ +Q +++ + I V + C + LQ L L
Sbjct: 84 QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK----------------LQNLSLEG 127
Query: 271 CSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFG 330
+ D ++ + + L+ L L C ++ ++ + S CS+L EL++S C T+
Sbjct: 128 L-RLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185
Query: 331 L-YELAKLGATLRYLSVAKCDQ-VSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLAR 388
+ +A + T+ L+++ + + + L + RRC L +L+ + +D +
Sbjct: 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245
Query: 389 SCTRLRALDIGKCD-VSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQL 447
L+ L + +C + L L E P +K L + +V D +Q + L L
Sbjct: 246 -LNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQV--FGIVPDGTLQLLK---EALPHL 298
Query: 448 NIQDCQISVEGYRAVKKYCKRCI 470
I + + + I
Sbjct: 299 QINCSHFTTIARPTIGNKKNQEI 321
Score = 129 bits (325), Expect = 9e-34
Identities = 49/251 (19%), Positives = 98/251 (39%), Gaps = 12/251 (4%)
Query: 6 CLTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCP 65
L + +Q +DL++ + LQ L L + D ++ + +
Sbjct: 85 PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTL-AKNS 142
Query: 66 QLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGL-YELAKLGATLRYLSV 124
L+ L L C ++ ++ + S CS+L EL++S C T+ + +A + T+ L++
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202
Query: 125 AKCDQ-VSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VS 182
+ + + + L + RRC L +L+ + +D + L+ L + +C +
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDII 261
Query: 183 DAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKK 242
L L E P +K L + +V D +Q + L L I + +
Sbjct: 262 PETLLELGE-IPTLKTLQV--FGIVPDGTLQLLK---EALPHLQINCSHFTTIARPTIGN 315
Query: 243 YCKRCCIQISC 253
+ I C
Sbjct: 316 KKNQEIWGIKC 326
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 138 bits (349), Expect = 4e-36
Identities = 97/486 (19%), Positives = 181/486 (37%), Gaps = 84/486 (17%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLYLR 73
+Q LD+ P Q + L DC + + +S + P L L LR
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 74 RCVKLTDIGIKYV----PSFCSQLKELSVSDCTQVTDFGLYELAKLGA---TLRYLSVAK 126
+L D+G+ V + ++++LS+ +C +T G L+ TL+ L ++
Sbjct: 65 SN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 127 CDQVSDAGLKVIA----RRCYKLRYLNARGCEAVSDDAITVLA---RSCTRLRALDIGKC 179
+ DAGL+++ +L L C +S + LA R+ + L +
Sbjct: 123 N-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN 180
Query: 180 DVSDAGLRALAE----SCPNIKKLSLRQCDLVTDRGVQCIAYY---CRGLQQLNIQDCQI 232
D+++AG+R L + S ++ L L C + T + + L++L + ++
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASLRELALGSNKL 239
Query: 233 SVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQG---LSLIVSNCPQL 289
G + + L+ L + +C + +G L ++ L
Sbjct: 240 GDVGMAELCPGLLHPSSR------------LRTLWIWEC-GITAKGCGDLCRVLRAKESL 286
Query: 290 IYLYLRRCVKLTDIGIKY----VPSFCSQLKELSVSDCTQVTDFGLYELAKLGA---TLR 342
L L +L D G + + QL+ L V C T + + A L
Sbjct: 287 KELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLL 344
Query: 343 YLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD 402
L ++ ++ DAG++ + + L + + LR L + CD
Sbjct: 345 ELQISNN-RLEDAGVRELCQ----------------------GLGQPGSVLRVLWLADCD 381
Query: 403 VSDAGLRALAE---SCPNIKKLSLRQCDLVTDRGVQCIA----YYCRGLQQLNIQDCQIS 455
VSD+ +LA + ++++L L L D G+ + L+QL + D S
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
Query: 456 VEGYRA 461
E
Sbjct: 441 EEMEDR 446
Score = 135 bits (343), Expect = 2e-35
Identities = 77/418 (18%), Positives = 160/418 (38%), Gaps = 62/418 (14%)
Query: 91 SQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIA---RRCYKLRY 147
++ L + +++D EL L + + + C +++A K I+ R L
Sbjct: 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAE 60
Query: 148 LNARGCEAVSDDAITVLAR----SCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLS 200
LN R E + D + + + +++ L + C ++ AG L+ + P +++L
Sbjct: 61 LNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 201 LRQCDLVTDRGVQCIA----YYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTA 256
L L D G+Q + L++L ++ C +S + S L A
Sbjct: 120 LSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL----------ASVLRA 168
Query: 257 SPTQLLLQFLDLTDCSNVDDQGLSLI----VSNCPQLIYLYLRRCVKLTDIGIKYVPS-- 310
P + L + +++++ G+ ++ + QL L L C +T + +
Sbjct: 169 KPD---FKELTV-SNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIV 223
Query: 311 -FCSQLKELSVSDCTQVTDFGLYELAKLGA----TLRYLSVAKCDQVSDAGLKVIA---R 362
+ L+EL++ ++ D G+ EL LR L + +C ++ G + R
Sbjct: 224 ASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLR 281
Query: 363 RCYKLRYLNARGCEAVSDDAITVLARS----CTRLRALDIGKCDVSDAGLRALAE---SC 415
L+ L+ G E + D+ +L + +L +L + C + A +
Sbjct: 282 AKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340
Query: 416 PNIKKLSLRQCDLVTDRGVQCIA----YYCRGLQQLNIQDCQISVEGYRAVKKYCKRC 469
+ +L + L D GV+ + L+ L + DC +S ++
Sbjct: 341 RFLLELQISNNRL-EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397
Score = 134 bits (339), Expect = 1e-34
Identities = 105/459 (22%), Positives = 177/459 (38%), Gaps = 76/459 (16%)
Query: 12 TQLLLQFLDLTDCSCIQI-SCLTASPTQLLLQFLDLTDCSNVDDQGLSLI-----VSNCP 65
+ L LT+ C I S L +P L L+L + D G+ + +C
Sbjct: 31 QVVRLDDCGLTEARCKDISSALRVNPA---LAELNLRSN-ELGDVGVHCVLQGLQTPSC- 85
Query: 66 QLIYLYLRRCVKLTDIGIKYVPS---FCSQLKELSVSDCTQVTDFGLYELAKL----GAT 118
++ L L+ C LT G + S L+EL +SD + D GL L +
Sbjct: 86 KIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCR 143
Query: 119 LRYLSVAKCDQVSDAGLKVIA---RRCYKLRYLNARGCEAVSDDAITVLAR----SCTRL 171
L L + C +S A + +A R + L + +++ + VL + S +L
Sbjct: 144 LEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQL 201
Query: 172 RALDIGKCDVSDAGLRALAE---SCPNIKKLSLRQCDLVTDRGVQCIA----YYCRGLQQ 224
AL + C V+ R L S ++++L+L L D G+ + + L+
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL-GDVGMAELCPGLLHPSSRLRT 260
Query: 225 LNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIV- 283
L I +C I+ +G + L A + L+ L L + D+G L+
Sbjct: 261 LWIWECGITAKGCGDL----------CRVLRAKES---LKELSLAGN-ELGDEGARLLCE 306
Query: 284 ---SNCPQLIYLYLRRCVKLTDIGIKY---VPSFCSQLKELSVSDCTQVTDFGLYELAKL 337
QL L+++ C T + V + L EL +S+ ++ D G+ EL +
Sbjct: 307 TLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQG 364
Query: 338 ----GATLRYLSVAKCDQVSDAGLKVIA---RRCYKLRYLNARGCEAVSDDAITVLARS- 389
G+ LR L +A C VSD+ +A + LR L+ + D I L S
Sbjct: 365 LGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESV 422
Query: 390 ---CTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLS 422
L L + S+ L P+++ +S
Sbjct: 423 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 107 bits (268), Expect = 1e-25
Identities = 42/328 (12%), Positives = 104/328 (31%), Gaps = 54/328 (16%)
Query: 171 LRALDIGKCDVSDAGLRALAE---SCPNIKKLSLRQCDLVTDRGVQCIAY---YCRGLQQ 224
+ + ++ +++ ++K++ L + + ++ + L+
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEI 64
Query: 225 LNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIV- 283
D R + + + + L P L + L+D ++
Sbjct: 65 AEFSDIFTG----RVKDEIPEALRLLLQALLKCPK---LHTVRLSDN-AFGPTAQEPLID 116
Query: 284 --SNCPQLIYLYLRRCVKLTDIGIKYV------------PSFCSQLKELSVSDCTQVTDF 329
S L +LYL L + L+ + ++ +
Sbjct: 117 FLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENG 174
Query: 330 GLYELA---KLGATLRYLSVAKCDQVSDAGLKVIA----RRCYKLRYLNARGCEAVSDDA 382
+ E A + L + + + + G++ + C +L+ L+ + +
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLG 232
Query: 383 ITVLA---RSCTRLRALDIGKCDVSDAGLRALAES---CPN--IKKLSLRQCDLVTDRGV 434
+ LA +S LR L + C +S G A+ ++ N ++ L L+ ++ V
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAV 291
Query: 435 QCIA----YYCRGLQQLNIQDCQISVEG 458
+ + L L + + S E
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSEED 319
Score = 82.1 bits (203), Expect = 4e-17
Identities = 39/264 (14%), Positives = 86/264 (32%), Gaps = 49/264 (18%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL---------LQFLDLTDCSNVDDQGLSLIV---SN 63
L+ + +D ++ +LL L + L+D ++ S
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSK 120
Query: 64 CPQLIYLYLRRCVKLTDIGIKYV------------PSFCSQLKELSVSDCTQVTDFGLYE 111
L +LYL L + L+ + ++ + + E
Sbjct: 121 HTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKE 178
Query: 112 LA---KLGATLRYLSVAKCDQVSDAGLKVIA----RRCYKLRYLNARGCEAVSDDAITVL 164
A + L + + + + G++ + C +L+ L+ + + + L
Sbjct: 179 WAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL 236
Query: 165 A---RSCTRLRALDIGKCDVSDAGLRALAES---CPN--IKKLSLRQCDLVTDRGVQCIA 216
A +S LR L + C +S G A+ ++ N ++ L L+ ++ V+ +
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLK 295
Query: 217 ----YYCRGLQQLNIQDCQISVEG 236
L L + + S E
Sbjct: 296 TVIDEKMPDLLFLELNGNRFSEED 319
Score = 60.1 bits (146), Expect = 5e-10
Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 21/141 (14%)
Query: 340 TLRYLSVAKCDQVSDAGLKVIA---RRCYKLRYLNARGCEAVSDDAITVLA---RSCTRL 393
++ S+ K D ++ K + ++ + G + +A L+ S L
Sbjct: 5 SIEGKSL-KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDL 62
Query: 394 RALDIGKCDVSD------AGLRALAES---CPNIKKLSLRQCDLVTDRGVQCIAYY---C 441
+ LR L ++ CP + + L + + +
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKH 121
Query: 442 RGLQQLNIQDCQISVEGYRAV 462
L+ L + + + + +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKI 142
Score = 59.7 bits (145), Expect = 7e-10
Identities = 14/176 (7%), Positives = 46/176 (26%), Gaps = 32/176 (18%)
Query: 315 LKELSVSDCTQVTDFGLYELAKL---GATLRYLSVAKCDQVSDAGLKVIA---RRCYKLR 368
++ S+ +T + + +++ + ++ + + ++ L
Sbjct: 6 IEGKSLKLD-AITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLE 63
Query: 369 YLNARGC-----EAVSDDAITVLA---RSCTRLRALDIGKCDVSDAGLRALAE---SCPN 417
+ +A+ +L C +L + + L +
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 418 IKKLSLRQCDLVTDRGVQCIA------------YYCRGLQQLNIQDCQISVEGYRA 461
++ L L L + IA L+ + ++ +
Sbjct: 124 LEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178
Score = 47.8 bits (114), Expect = 5e-06
Identities = 10/116 (8%), Positives = 33/116 (28%), Gaps = 13/116 (11%)
Query: 367 LRYLNARGCEAVSDDAITVLA--RSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKL 421
+ + + ++D +V A ++ + + + R L+E S +++
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 422 SLRQCDL-----VTDRGVQCIAY---YCRGLQQLNIQDCQISVEGYRAVKKYCKRC 469
++ + C L + + D + + +
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 96.3 bits (240), Expect = 6e-22
Identities = 36/336 (10%), Positives = 95/336 (28%), Gaps = 72/336 (21%)
Query: 151 RGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE----SCPNIKKLSLRQCDL 206
G V + + +LD+ ++ L + + ++ L+L L
Sbjct: 9 PGSNPVEE-----FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL 63
Query: 207 VTDRGVQCIA----YYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLL 262
+ + + LN+ +S + + + L A P +
Sbjct: 64 -GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL----------VKTLAAIPFTI- 111
Query: 263 LQFLDLTDCSNVDDQGLSLIV----SNCPQLIYLYLRRCVKLTDIGIKYV----PSFCSQ 314
LDL + + S + + L LR L + + +
Sbjct: 112 -TVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPAN 168
Query: 315 LKELSVSDCTQVTDFGLYELAK----LGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYL 370
+ L++ + ELAK + A++ L ++ + +A
Sbjct: 169 VNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAY-------- 218
Query: 371 NARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLSLRQCD 427
+ + + +L++ + L L S +++ + L
Sbjct: 219 --------------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264
Query: 428 L--VTDRGVQCIAY---YCRGLQQLNIQDCQISVEG 458
+ ++ + + + + ++ +I
Sbjct: 265 VKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300
Score = 89.0 bits (221), Expect = 1e-19
Identities = 39/371 (10%), Positives = 95/371 (25%), Gaps = 98/371 (26%)
Query: 88 SFCSQLKELSVSDCTQVTDFGLYELAKL----GATLRYLSVAKCDQVSDAGLKVIARRCY 143
S + L +S + EL + A++ L+++ + + +
Sbjct: 19 SIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQ--- 73
Query: 144 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE----SCPNIKKL 199
+LA + +L++ +S L + I L
Sbjct: 74 -------------------ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVL 114
Query: 200 SLRQCDLVTDRGVQCIA----YYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLT 255
L D + + + LN++ + ++
Sbjct: 115 DLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS------------------- 154
Query: 256 ASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYV----PSF 311
+ L+Q L + + L LR L + S
Sbjct: 155 ---SDELIQILAAIPAN----------------VNSLNLRGN-NLASKNCAELAKFLASI 194
Query: 312 CSQLKELSVSDCTQVTDFGLYELAKL----GATLRYLSVAKCDQVSDAGLKVIA---RRC 364
+ + L +S + ELA + + L++ + L+ +
Sbjct: 195 PASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSL 252
Query: 365 YKLRYLNARGCE--AVSDDAITVLA---RSCTRLRALDIGKCDVSDAGLRALAES----C 415
L+ + +S + L + ++ +D ++ + ++
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS 312
Query: 416 PNIKKLSLRQC 426
SL
Sbjct: 313 GKADVPSLLNQ 323
Score = 75.5 bits (186), Expect = 5e-15
Identities = 29/287 (10%), Positives = 76/287 (26%), Gaps = 62/287 (21%)
Query: 206 LVTDRGVQCIAY---YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLL 262
L G + G+ L++ + + I +P +
Sbjct: 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVEL----------IQAFANTPASV- 53
Query: 263 LQFLDLTDCSNVDDQGLSLIV----SNCPQLIYLYLRRCVKLTDIGIKYV----PSFCSQ 314
L+L+ ++ + +V + + L L L+ + +
Sbjct: 54 -TSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFT 110
Query: 315 LKELSVSDCTQVTDFGLYELAK----LGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYL 370
+ L + + E + L A++ L++ + + +
Sbjct: 111 ITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQ-------- 160
Query: 371 NARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAES----CPNIKKLSLRQC 426
+LA + +L++ +++ LA+ ++ L L
Sbjct: 161 --------------ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206
Query: 427 DLVTDRGVQCIA----YYCRGLQQLNIQDCQISVEGYRAVKKYCKRC 469
L + +A + LN+ + +K
Sbjct: 207 LL-GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 86.3 bits (214), Expect = 1e-18
Identities = 46/340 (13%), Positives = 98/340 (28%), Gaps = 73/340 (21%)
Query: 118 TLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIG 177
+LR L++A +++ V+A VL L +++
Sbjct: 73 SLRQLNLAGV-RMTPVKCTVVAA----------------------VLGSGRHALDEVNLA 109
Query: 178 KCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIA----YYCRGLQQLNIQDCQIS 233
C + AGLR L +KL L+ L + + + + L + + ++
Sbjct: 110 SCQLDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQITTLRLSNNPLT 168
Query: 234 VEGYRAVKKYCKRCCIQIS-CLTASPTQLLLQFLDLTDCSNVDDQGLSLI---VSNCPQL 289
G + L + + + L L + D+GL L+ + QL
Sbjct: 169 AAG-----------VAVLMEGLAGNTS---VTHLSLLHT-GLGDEGLELLAAQLDRNRQL 213
Query: 290 IYLYLRRCVKLTDIGIKYVPSFCSQ---LKELSVSDCTQVTDFGLYELAKLGATLR---- 342
L + D + + L+ L + +++ G L LG
Sbjct: 214 QELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGAR 271
Query: 343 -YLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKC 401
+S+ + VS+ +++ L + + L D+
Sbjct: 272 VVVSLTEGTAVSEYWSVILSEVQRNLNSWD------------RARVQRHLELLLRDLEDS 319
Query: 402 DVSDAGLRALAESC---PNIKKLSLRQCDLVTDRGVQCIA 438
+ A+ ++ L +
Sbjct: 320 RGATLNPWRKAQLLRVEGEVRALLEQLGSS-GSPSGSWSH 358
Score = 80.5 bits (199), Expect = 9e-17
Identities = 45/265 (16%), Positives = 86/265 (32%), Gaps = 30/265 (11%)
Query: 222 LQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSL 281
L QL C I + K+ ++ P++ LD + Q
Sbjct: 15 LAQLG---CPIKNLDALENAQAIKKKLGKLGRQVLPPSE----LLDHLFFHY-EFQNQRF 66
Query: 282 IVSNCPQLIYLYLRRCVKLTDIGIKYV----PSFCSQLKELSVSDCTQVTDFGLYELAKL 337
L L L ++T + V S L E++++ C Q+ GL L +
Sbjct: 67 SAEVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPV 124
Query: 338 GATLRYLSVAKCDQVSDAGLKVIA----RRCYKLRYLNARGCEAVSDDAITVLA---RSC 390
R L + + K + ++ L ++ + VL
Sbjct: 125 FLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGN 182
Query: 391 TRLRALDIGKCDVSDAGLRALAE---SCPNIKKLSLRQCDLVTDRGVQCIAYYCRG---L 444
T + L + + D GL LA +++L++ D +A R L
Sbjct: 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSL 241
Query: 445 QQLNIQDCQISVEGYRAVKKYCKRC 469
+ L++ ++S EG + ++
Sbjct: 242 ELLHLYFNELSSEGRQVLRDLGGAA 266
Score = 45.1 bits (107), Expect = 3e-05
Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 41/211 (19%)
Query: 16 LQFLDLTDCS-----CIQIS-CLTASPTQLLLQFLDLTDCSNVDDQGLSLI---VSNCPQ 66
+ L L++ + L + + + L L + D+GL L+ + Q
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTS---VTHLSLLHT-GLGDEGLELLAAQLDRNRQ 212
Query: 67 LIYLYLRRCVKLTDIGIKYVPSFCSQ---LKELSVSDCTQVTDFGLYELAKLGATLR--- 120
L L + D + + L+ L + +++ G L LG
Sbjct: 213 LQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGA 270
Query: 121 --YLSVAKCDQVSDAGLKVIA--------------RRCYKLRYLNARGCEAVSDDAITVL 164
+S+ + VS+ +++ +R +L + +
Sbjct: 271 RVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSR-GATLNPWRK 329
Query: 165 A---RSCTRLRALDIGKCDVSDAGLRALAES 192
A R +RAL
Sbjct: 330 AQLLRVEGEVRALLEQLGSSGSPSGSWSHPQ 360
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 78.7 bits (194), Expect = 2e-17
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 53 DDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYEL 112
D L + ++ + + IG ++ ++++ + C + D L L
Sbjct: 49 DYNHLPTGPLDKYKIQAIDATDS-CIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERL 106
Query: 113 AKL---GATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCT 169
++L ++ + + C V+D G+ + L+YL V + V T
Sbjct: 107 SQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQ-AFKT 164
Query: 170 RLRALDIGKCDV 181
L +L++ K D+
Sbjct: 165 SLPSLEL-KLDL 175
Score = 78.7 bits (194), Expect = 2e-17
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 275 DDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYEL 334
D L + ++ + + IG ++ ++++ + C + D L L
Sbjct: 49 DYNHLPTGPLDKYKIQAIDATDS-CIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERL 106
Query: 335 AKL---GATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCT 391
++L ++ + + C V+D G+ + L+YL V + V T
Sbjct: 107 SQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQ-AFKT 164
Query: 392 RLRALDIGKCDV 403
L +L++ K D+
Sbjct: 165 SLPSLEL-KLDL 175
Score = 70.3 bits (172), Expect = 2e-14
Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 334 LAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRL 393
L + GA +RY + Q L YK++ ++A +
Sbjct: 31 LLRCGAMVRYHGQQRW-QKDYNHLPTGPLDKYKIQAIDATDSC--IMSIGFDHMEGLQYV 87
Query: 394 RALDIGKCD-VSDAGLRALAESCP---NIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNI 449
+ + KC + D L L++ ++ ++ + C VTD+G+ + + R L+ L +
Sbjct: 88 EKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFL 146
Query: 450 QDC-QISVEG--YRAVKKYCKRCIIE 472
D + + +A K ++
Sbjct: 147 SDLPGVKEKEKIVQAFKTSLPSLELK 172
Score = 70.3 bits (172), Expect = 2e-14
Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 11/147 (7%)
Query: 112 LAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRL 171
L + GA +RY + Q L YK++ ++A +
Sbjct: 31 LLRCGAMVRYHGQQRW-QKDYNHLPTGPLDKYKIQAIDATDSC--IMSIGFDHMEGLQYV 87
Query: 172 RALDIGKCD-VSDAGLRALAESCP---NIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNI 227
+ + KC + D L L++ ++ ++ + C VTD+G+ + + R L+ L +
Sbjct: 88 EKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFL 146
Query: 228 QDC-QISVEG--YRAVKKYCKRCCIQI 251
D + + +A K +++
Sbjct: 147 SDLPGVKEKEKIVQAFKTSLPSLELKL 173
Score = 67.9 bits (166), Expect = 1e-13
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI---VSNCPQLIYLYL 72
+Q +D TD + I Q + + + L C ++D L + + ++ + +
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYV-EKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 73 RRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELA 113
C +TD GI + LK L +SD V + A
Sbjct: 122 ISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQA 161
Score = 66.8 bits (163), Expect = 3e-13
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 21/120 (17%)
Query: 219 CRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQG 278
+Q ++ D I G+ ++ + ++ + L C ++D
Sbjct: 60 KYKIQAIDATDSCIMSIGFDHMEG-LQY----------------VEKIRLCKCHYIEDGC 102
Query: 279 LSLI---VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELA 335
L + + ++ + + C +TD GI + LK L +SD V + A
Sbjct: 103 LERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQA 161
Score = 64.9 bits (158), Expect = 2e-12
Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 42/189 (22%)
Query: 133 AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAES 192
A + + R +RY + + + + +++A+D + G E
Sbjct: 26 AASEWLLRCGAMVRYHGQQRWQK-DYNHLPTGPLDKYKIQAIDATDSCIMSIGF-DHMEG 83
Query: 193 CPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQIS 252
++K+ L +C + D ++ ++
Sbjct: 84 LQYVEKIRLCKCHYIEDGCLERLSQLE--------------------------------- 110
Query: 253 CLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFC 312
Q + +++ C NV D+G+ + + L YL+L + + +F
Sbjct: 111 -----NLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQ-AFK 163
Query: 313 SQLKELSVS 321
+ L L +
Sbjct: 164 TSLPSLELK 172
Score = 61.4 bits (149), Expect = 2e-11
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 8/134 (5%)
Query: 321 SDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSD 380
Q L ++ + + G + + + C + D
Sbjct: 43 QQRWQKDYNHLPTGPLDKYKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIED 100
Query: 381 DAITVLARSC---TRLRALDIGKC-DVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQC 436
+ L++ + ++I C +V+D G+ AL N+K L L V ++
Sbjct: 101 GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIV 159
Query: 437 IAYYCRGLQQLNIQ 450
A + L L ++
Sbjct: 160 QA-FKTSLPSLELK 172
Score = 49.8 bits (119), Expect = 2e-07
Identities = 16/114 (14%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 355 AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAES 414
A + + R +RY + + + + +++A+D + G E
Sbjct: 26 AASEWLLRCGAMVRYHGQQRWQK-DYNHLPTGPLDKYKIQAIDATDSCIMSIGF-DHMEG 83
Query: 415 CPNIKKLSLRQCDLVTDRGVQCIA---YYCRGLQQLNIQDC-QISVEGYRAVKK 464
++K+ L +C + D ++ ++ + + ++ I C ++ +G A+
Sbjct: 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137
Score = 34.0 bits (78), Expect = 0.044
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 10 SPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIV--SNCPQL 67
Q + +++ C + + A L++L L+D V ++ + ++ P L
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 68.1 bits (167), Expect = 2e-12
Identities = 70/462 (15%), Positives = 135/462 (29%), Gaps = 111/462 (24%)
Query: 10 SPTQLLLQFLDLTDCSCIQISCLTASPTQLL-LQFLDLTDC-----------SNVDDQGL 57
+P + FL ++ + + +
Sbjct: 4 NPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63
Query: 58 SLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGA 117
L Q L L G+ +P L+ L S L EL +L
Sbjct: 64 RLRDCLDRQAHELELNNL------GLSSLPELPPHLESLVASCN------SLTELPELPQ 111
Query: 118 TLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLA--RSCTRLRALD 175
+L+ L V + LK ++ L YL + + L ++ + L+ +D
Sbjct: 112 SLKSL------LVDNNNLKALSDLPPLLEYLGVSNNQ------LEKLPELQNSSFLKIID 159
Query: 176 IGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVE 235
+ L+ L + P+++ ++ L + + L + + +
Sbjct: 160 VDNNS-----LKKLPDLPPSLEFIAAGNNQLEE---LPELQ-NLPFLTAIYADNNSLKK- 209
Query: 236 GYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI--VSNCPQLIYLY 293
L P L+ + + L + + N P L +Y
Sbjct: 210 ------------------LPDLPLS--LESIVAGNNI------LEELPELQNLPFLTTIY 243
Query: 294 LRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVS 353
L + P L+ L+V D L +L +L +L +L VS
Sbjct: 244 ADNN-LLKTL-----PDLPPSLEALNVRDN------YLTDLPELPQSLTFL------DVS 285
Query: 354 DAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE 413
+ ++ L YLN S + I L L L++ L L
Sbjct: 286 ENIFSGLSELPPNLYYLN------ASSNEIRSLCDLPPSLEELNVSNNK-----LIELPA 334
Query: 414 SCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
P +++L L + + L+QL+++ +
Sbjct: 335 LPPRLERLIASFNHLAE------VPELPQNLKQLHVEYNPLR 370
Score = 55.8 bits (135), Expect = 1e-08
Identities = 49/326 (15%), Positives = 106/326 (32%), Gaps = 74/326 (22%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI--VSNCPQLIYLYLR 73
L+ +D+ + + L P L +F+ + L + + N P L +Y
Sbjct: 155 LKIIDVDNN---SLKKLPDLPPSL--EFIAAGNNQ------LEELPELQNLPFLTAIYAD 203
Query: 74 RCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDA 133
L + P L+ + + + + L EL L L + +
Sbjct: 204 NN-SLKKL-----PDLPLSLESIVAGNN-ILEE--LPELQNL-PFLTTIYA------DNN 247
Query: 134 GLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESC 193
LK + L LN V D+ +T L L LD VS+ L+E
Sbjct: 248 LLKTLPDLPPSLEALN------VRDNYLTDLPELPQSLTFLD-----VSENIFSGLSELP 296
Query: 194 PNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV--EGYRAVKK-YCKRCCIQ 250
PN+ L+ ++ + + L++LN+ + ++ +++
Sbjct: 297 PNLYYLNASSNEIRS------LCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN--H 348
Query: 251 ISCLTASPTQLLLQFLDLTDCS--------------NVDDQGLSLIVSNCPQLIYLYLRR 296
++ + P L + L + ++ L+ + L L++
Sbjct: 349 LAEVPELPQNL--KQLHVEYNPLREFPDIPESVEDLRMNSH-LAEVPELPQNLKQLHVET 405
Query: 297 CVKLTDIGIKYVPSFCSQLKELSVSD 322
++ P +++L ++
Sbjct: 406 NP------LREFPDIPESVEDLRMNS 425
Score = 29.2 bits (66), Expect = 3.0
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 20/98 (20%)
Query: 3 QISCLTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVS 62
++ + P L + L + + P + DL S+ L+ +
Sbjct: 348 HLAEVPELPQNL--KQLHVEYN---PLREFPDIPESVE----DLRMNSH-----LAEVPE 393
Query: 63 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 100
L L++ ++ P +++L ++
Sbjct: 394 LPQNLKQLHVETNP------LREFPDIPESVEDLRMNS 425
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 63.4 bits (153), Expect = 4e-11
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 18/171 (10%)
Query: 90 CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYL- 148
L L + L K L+ L + ++ L L
Sbjct: 171 MPLLNNLKIKGTN-----NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225
Query: 149 ------NARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAES--CPNIKKLS 200
+ ++ L+ L I + + + ES P ++ +
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285
Query: 201 LRQCDLVTDRGVQCIAYYC---RGLQQLNIQDCQISVEGYRAVKKYCKRCC 248
+ L TD G + + + + L+ +N++ +S E + ++K
Sbjct: 286 ISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKI 335
Score = 63.0 bits (152), Expect = 5e-11
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 18/165 (10%)
Query: 312 CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYL- 370
L L + L K L+ L + ++ L L
Sbjct: 171 MPLLNNLKIKGTN-----NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225
Query: 371 ------NARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAES--CPNIKKLS 422
+ ++ L+ L I + + + ES P ++ +
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285
Query: 423 LRQCDLVTDRGVQCIAYYC---RGLQQLNIQDCQISVEGYRAVKK 464
+ L TD G + + + + L+ +N++ +S E + ++K
Sbjct: 286 ISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329
Score = 60.4 bits (145), Expect = 4e-10
Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 22/219 (10%)
Query: 2 IQISCLTASPTQLLLQFLDLTDC--SCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSL 59
++ A L +D + S I+ L+ +L L + LS+
Sbjct: 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP----VLDAMPLLNNLKIKGTNNLSI 187
Query: 60 IVSNCPQLIYLYLRRCVKLTDIGIKYV-PSFCSQLK--ELSVSDCTQVTDFGLYELAKLG 116
P L L + L D ++ + S L+ L V D + L
Sbjct: 188 GKKPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246
Query: 117 A-----TLRYLSVAKCDQVSDAGLKVIA--RRCYKLRYLNARGCEAVSDDAITVLARSC- 168
+ L++L + + + +++ +L ++ ++D+ +L
Sbjct: 247 SKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVD 304
Query: 169 --TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD 205
L+ +++ +SD + L +S P +S Q
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEY 343
Score = 60.0 bits (144), Expect = 5e-10
Identities = 30/197 (15%), Positives = 66/197 (33%), Gaps = 20/197 (10%)
Query: 244 CKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI 303
+ I+ L+ +L L + LS+ P L L + L D
Sbjct: 154 QEISWIEQVDLSP----VLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISG-GLPDS 208
Query: 304 GIKYV-PSFCSQLK--ELSVSDCTQVTDFGLYELAKLGA-----TLRYLSVAKCDQVSDA 355
++ + S L+ L V D + L + L++L + + +
Sbjct: 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNV 267
Query: 356 GLKVIA--RRCYKLRYLNARGCEAVSDDAITVLARSC---TRLRALDIGKCDVSDAGLRA 410
+++ +L ++ ++D+ +L L+ +++ +SD +
Sbjct: 268 VVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326
Query: 411 LAESCPNIKKLSLRQCD 427
L +S P +S Q
Sbjct: 327 LQKSLPMKIDVSDSQEY 343
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 62.3 bits (152), Expect = 1e-10
Identities = 75/424 (17%), Positives = 145/424 (34%), Gaps = 114/424 (26%)
Query: 41 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI-GIKYVPSFCSQLKELSVS 99
L + D + + Q+ L R + I G++Y + L +++ S
Sbjct: 26 KMKTVLGKTNVTDTVSQT----DLDQVTTLQADRL-GIKSIDGVEY----LNNLTQINFS 76
Query: 100 DCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD 159
+ Q+TD + L L L + + Q++D + +A L L + ++D
Sbjct: 77 NN-QLTD--ITPLKNL-TKLVDILMNNN-QIAD--ITPLAN-LTNLTGLTLFNNQ-ITD- 126
Query: 160 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 219
I L + T L L++ +SD + AL ++++LS + + +
Sbjct: 127 -IDPLK-NLTNLNRLELSSNTISD--ISAL-SGLTSLQQLSF-GNQVTDLKPLA----NL 176
Query: 220 RGLQQLNIQDCQIS-VEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQG 278
L++L+I ++S + ++ LT L+ L T+ D
Sbjct: 177 TTLERLDISSNKVSDISV--------------LAKLTN------LESLIATNNQISDITP 216
Query: 279 LSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDF-GLYELA 335
L L L L +L DI + + L +L +++ Q+++ L L
Sbjct: 217 LG----ILTNLDELSLNGN-QLKDI-----GTLASLTNLTDLDLANN-QISNLAPLSGLT 265
Query: 336 KLGATLRYLSVAKCDQVSD----AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCT 391
KL L + Q+S+ AGL L L + I+ +
Sbjct: 266 KL----TELKLGAN-QISNISPLAGLT-------ALTNLELNENQLEDISPIS----NLK 309
Query: 392 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQD 451
L L + ++SD + L+ LQ+L +
Sbjct: 310 NLTYLTLYFNNISDI---------SPVSSLT--------------------KLQRLFFYN 340
Query: 452 CQIS 455
++S
Sbjct: 341 NKVS 344
Score = 56.5 bits (137), Expect = 8e-09
Identities = 63/331 (19%), Positives = 122/331 (36%), Gaps = 77/331 (23%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI-VSNCPQLIYLYLRR 74
L L+L+ + IS L+ + LQ L +Q L ++N L L +
Sbjct: 136 LNRLELSSNTISDISALSGLTS---LQQLSF------GNQVTDLKPLANLTTLERLDISS 186
Query: 75 CVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDF-GLYELAKLGATLRYLSVAKCDQVS 131
K++DI + L+ L ++ Q++D L L L LS+ Q+
Sbjct: 187 N-KVSDI-----SVLAKLTNLESLIATNN-QISDITPLGILTNL----DELSLNGN-QLK 234
Query: 132 DAGLKVIARRCYKLRYLNARGCEAVSDDAITVLA--RSCTRLRALDIGKCDVSDAGLRAL 189
D + +A L L+ ++++ I+ LA T+L L +G +S+ + L
Sbjct: 235 D--IGTLAS-LTNLTDLD------LANNQISNLAPLSGLTKLTELKLGANQISN--ISPL 283
Query: 190 AESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCI 249
+ L L + L + I+ + L L + IS
Sbjct: 284 -AGLTALTNLELNENQL---EDISPISN-LKNLTYLTLYFNNIS-------------DIS 325
Query: 250 QISCLTASPTQLLLQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI-GIK 306
+S LT LQ L + S+V ++N + +L +++D+ +
Sbjct: 326 PVSSLTK------LQRLFFYNNKVSDVS------SLANLTNINWLSAGHN-QISDLTPLA 372
Query: 307 YVPSFCSQLKELSVSDCTQVTDFGLYELAKL 337
+++ +L ++D T+ + A +
Sbjct: 373 N----LTRITQLGLNDQ-AWTNAPVNYKANV 398
Score = 55.7 bits (135), Expect = 2e-08
Identities = 64/289 (22%), Positives = 108/289 (37%), Gaps = 58/289 (20%)
Query: 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQ 228
+GK +V+D + + + L + + + GV+ Y L Q+N
Sbjct: 24 AEKMKTVLGKTNVTD--TVSQTD-LDQVTTLQADRLGIKSIDGVE----YLNNLTQINFS 76
Query: 229 DCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQ 288
+ Q++ + LT L + + + D L +N
Sbjct: 77 NNQLTDI-------------TPLKNLTK------LVDILMNNNQIADITPL----ANLTN 113
Query: 289 LIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSV 346
L L L ++TDI + L L +S ++D + L+ L + L+ LS
Sbjct: 114 LTGLTLFNN-QITDI-----DPLKNLTNLNRLELSSN-TISD--ISALSGLTS-LQQLSF 163
Query: 347 AKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDA 406
+QV+D LK +A L L+ + VSD I+VLA T L +L +SD
Sbjct: 164 G--NQVTD--LKPLA-NLTTLERLDISSNK-VSD--ISVLA-KLTNLESLIATNNQISD- 213
Query: 407 GLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
+ L N+ +LSL L + L L++ + QIS
Sbjct: 214 -ITPL-GILTNLDELSLNGNQLKDIGTLA----SLTNLTDLDLANNQIS 256
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 60.5 bits (147), Expect = 4e-10
Identities = 70/420 (16%), Positives = 123/420 (29%), Gaps = 92/420 (21%)
Query: 41 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI-GIKYVPSFCSQLKELSVS 99
+S L L +TD+ GI+ + L +L +
Sbjct: 20 FASEVAAAFEMQATDTISE--EQLATLTSLDCHNS-SITDMTGIEK----LTGLTKLICT 72
Query: 100 DCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIA-RRCYKLRYLNARGCEAVSD 158
+T L + L YL+ L + KL YLN
Sbjct: 73 SN-NITTLDLSQNTN----LTYLA------CDSNKLTNLDVTPLTKLTYLN------CDT 115
Query: 159 DAITVL-ARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAY 217
+ +T L L L+ + +++ + + +L +T V
Sbjct: 116 NKLTKLDVSQNPLLTYLNCARNTLTEIDV----SHNTQLTELDCHLNKKITKLDVT---- 167
Query: 218 YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQ 277
L L+ +I+ + +S L L+
Sbjct: 168 PQTQLTTLDCSFNKITE--------------LDVSQNKL------LNRLNCDTN-----N 202
Query: 278 GLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKL 337
L ++ QL +L KLT+I + + +QL S +T+ + L+K
Sbjct: 203 ITKLDLNQNIQLTFLDCSSN-KLTEIDV----TPLTQLTYFDCSVN-PLTELDVSTLSK- 255
Query: 338 GATLRYLSVAKCDQVSDAGLKVI-ARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 396
L L L I +L Y A GC + + +T T+L L
Sbjct: 256 ---LTTLH------CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT----HNTQLYLL 302
Query: 397 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVT-DRGVQCIAYYCRGLQQLNIQDCQIS 455
D +++ L P + L L +L D + L+ L+ + I
Sbjct: 303 DCQAAGITELDL----SQNPKLVYLYLNNTELTELDVS------HNTKLKSLSCVNAHIQ 352
Score = 57.8 bits (140), Expect = 4e-09
Identities = 62/341 (18%), Positives = 116/341 (34%), Gaps = 79/341 (23%)
Query: 16 LQFLDLTDC--SCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLR 73
L L T + + +S T L +L + +L V+ +L YL
Sbjct: 66 LTKLICTSNNITTLDLSQNTN------LTYLACDSN-----KLTNLDVTPLTKLTYLNCD 114
Query: 74 RCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDA 133
KLT + + S L L+ + +T+ + +L L +++
Sbjct: 115 TN-KLTKLDV----SQNPLLTYLNCARN-TLTEIDVSHNTQL----TELDCHLNKKITKL 164
Query: 134 GLKVIARRCYKLRYLNARGCEAVSDDAITVLARS-CTRLRALDIGKCDVSDAGLRALAES 192
+ +L L+ S + IT L S L L+ +++ L
Sbjct: 165 DVT----PQTQLTTLD------CSFNKITELDVSQNKLLNRLNCDTNNITKLDL----NQ 210
Query: 193 CPNIKKLSLRQCDL----VTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKK----YC 244
+ L L VT L + ++ + K +C
Sbjct: 211 NIQLTFLDCSSNKLTEIDVTP---------LTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261
Query: 245 KRCCIQISCLTASP-TQLL---------LQFLDLTDCSN-----VDDQGL-SLIVSNCPQ 288
+ + + + TQL+ ++ LD+T + G+ L +S P+
Sbjct: 262 IQT--DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319
Query: 289 LIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF 329
L+YLYL +LT++ + S ++LK LS + + DF
Sbjct: 320 LVYLYLNNT-ELTELDV----SHNTKLKSLSCVNA-HIQDF 354
Score = 35.0 bits (81), Expect = 0.049
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 3 QISCLTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVS 62
+ + + L + C I+ +T + L LD L +S
Sbjct: 265 DLLEIDLTH-NTQLIYFQAEGCRKIKELDVTHNT---QLYLLDCQAA-----GITELDLS 315
Query: 63 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF 107
P+L+YLYL +LT++ + S ++LK LS + + DF
Sbjct: 316 QNPKLVYLYLNNT-ELTELDV----SHNTKLKSLSCVNA-HIQDF 354
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 60.8 bits (148), Expect = 5e-10
Identities = 72/460 (15%), Positives = 139/460 (30%), Gaps = 55/460 (11%)
Query: 7 LTASPTQLL--LQFLDLTDCSCIQISCLTASPTQLL--LQFLDLTDC--SNVDDQGLSLI 60
P L + LDL+ + L + LQ LDL+ C ++D
Sbjct: 19 FYKIPDNLPFSTKNLDLSFN---PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-- 73
Query: 61 VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC--TQVTDFGLYELAKLGAT 118
+ L L L + + S S L++L + + +F + L L
Sbjct: 74 --SLSHLSTLILTGN-PIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL--- 126
Query: 119 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGC--EAVSDDAITVLARSCTRLRALDI 176
+ L+VA + L L +L+ +++ + VL + +LD+
Sbjct: 127 -KELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 177 GKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI-SVE 235
++ A + KL+LR + + +GL L + +
Sbjct: 185 SLNPMNFIQPGAF--KEIRLHKLTLRNNFD----SLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 236 GYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLR 295
++K S L L ++ L D + L + + L
Sbjct: 239 NEGNLEK------FDKSALE-GLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLV 290
Query: 296 RCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDA 355
+ + S+ + L + +C + F +L L L + S + S+
Sbjct: 291 SV-TIERVKDF---SYNFGWQHLELVNC-KFGQFPTLKLKSL-KRLTFTSNKGGNAFSEV 344
Query: 356 GLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESC 415
L L +L+ + T L+ LD+ V + +
Sbjct: 345 DLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGL 395
Query: 416 PNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
++ L + +L R L L+I
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTR 434
Score = 50.8 bits (122), Expect = 6e-07
Identities = 68/482 (14%), Positives = 117/482 (24%), Gaps = 94/482 (19%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL-----LQFLDLTDCSNVDDQGLSLIVSNCPQLIYL 70
L L LT + + LQ L + + + + + L L
Sbjct: 78 LSTLILTGNP------IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKEL 129
Query: 71 YLRRCVKLTDIGIKYVPSFCSQLKELSVSDC--TQVTDFGLYELAKLGAT---------- 118
+ + + S + L+ L +S + L L ++
Sbjct: 130 NVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 119 -------------LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLA 165
L L++ S +K + L E ++ +
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNN-FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 166 RS-CTRLRALDIG-----KCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 219
+S L L I D + L N+ SL + + Y
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS----YN 303
Query: 220 RGLQQLNIQDCQIS--VEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQ 277
G Q L + +C+ K + + L+FLDL+
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363
Query: 278 GLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDFGLYELA 335
S L YL L + + +F QL+ L
Sbjct: 364 CCSQSDFGTTSLKYLDLSFN-GVITMS----SNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 336 KLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRA 395
L L YL ++ R + L
Sbjct: 419 SL-RNLIYLDISHT----------------HTRVAFNGIFN------------GLSSLEV 449
Query: 396 LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL--VTDRGVQCIAYYCRGLQQLNIQDCQ 453
L + + L + N+ L L QC L ++ LQ LN+
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----LSSLQVLNMSHNN 505
Query: 454 IS 455
Sbjct: 506 FF 507
Score = 35.0 bits (81), Expect = 0.052
Identities = 37/231 (16%), Positives = 56/231 (24%), Gaps = 43/231 (18%)
Query: 7 LTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQ 66
PT L LT + + + L+FLDL+ S
Sbjct: 316 FGQFPTLKLKSLKRLTF-TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 67 LIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSV 124
L YL L + + +F QL+ L L L YL +
Sbjct: 375 LKYLDLSFN-GVITMS----SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDI 428
Query: 125 AKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDA 184
+ R + L L + +
Sbjct: 429 SHT----------------HTRVAFNGIFN------------GLSSLEVLKMAGNSFQEN 460
Query: 185 GLRALAESCPNIKKLSLRQCDL--VTDRGVQCIAYYCRGLQQLNIQDCQIS 233
L + N+ L L QC L ++ LQ LN+
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----LSSLQVLNMSHNNFF 507
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 4e-09
Identities = 91/536 (16%), Positives = 150/536 (27%), Gaps = 167/536 (31%)
Query: 8 TASPTQLLLQFLDLTDCSCIQISCLTASPTQLLL---------QFLDLTD-----CSNVD 53
+P +L+ +FL + +L +L+ D +
Sbjct: 54 PTTPAELVGKFLGYVSS---LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 54 DQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQV-TDFG---- 108
+ +L+ + +LI Y+ + + + S L Q+ FG
Sbjct: 111 ENDTTLVKTK--ELIKNYITARI-MAKRPFDKKSN--SALFRAVGEGNAQLVAIFGGQGN 165
Query: 109 --LY--ELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCE---------- 154
Y EL L T L V + S L + R + +G
Sbjct: 166 TDDYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 155 ----------AVSDDAITV--LARSCTRLRALDIGKCDVSD--------------AGLRA 188
+S I V LA + L ++ A A
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 189 LAESCPNIKKLSLRQCDLVTDRGVQC-IAYYCRGLQQLNIQDC----------QISVEGY 237
+S + + ++ GV+C AY L ++D +S+
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 238 R--AVKKYCKRCC--------IQISCLTASPTQLL-------LQFLDLT----DCSNVDD 276
V+ Y + ++IS L L+ L L+LT + D
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 277 QGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFC---SQLKELSVSDCTQVTDFGLYE 333
Q S P + R KL +++P S L L +D +
Sbjct: 404 Q------SRIP-----FSER--KLK-FSNRFLPVASPFHSHL--L-----VPASDLINKD 442
Query: 334 LAKLGATLRYLSVAKCDQVSDAGLKVIARRCYK------LRYLNARGCEAVSDDAITVLA 387
L K + D + V Y LR L+ E + D I L
Sbjct: 443 LVKNNVSFN---------AKDIQIPV-----YDTFDGSDLRVLSGSISERIV-DCIIRLP 487
Query: 388 ---RSCTRLRA---LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCI 437
+ T+ +A LD G S G L+ R D GV+ I
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLG------------VLTHRNKDG---TGVRVI 528
Score = 47.7 bits (113), Expect = 7e-06
Identities = 77/389 (19%), Positives = 134/389 (34%), Gaps = 93/389 (23%)
Query: 86 VPS----FCSQLKELSVSDCTQVTD-FGLYE----LAKLGATLRYLS-VAKCDQVSDAG- 134
VP+ SQL+E + T+ F + A+L ++L V+ + S G
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG--KFLGYVSSLVEPSKVGQ 79
Query: 135 ----LKVIARRCYKLRYLNARGCEAVSDDAI-TVLARSCTRLRALDIGKCDVSDAGLRAL 189
L + ++ YL G +D I + A+ + ++ + A
Sbjct: 80 FDQVLNLCL-TEFENCYL--EG-----ND-IHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 190 AESCPNIKKLS----LRQCDLVTDRGVQCIAYYCRGLQQLNIQDC----QISVEGYRA-V 240
+ K S R V + Q +A + G Q N D + + Y V
Sbjct: 131 IMAKRPFDKKSNSALFRA---VGEGNAQLVAIF--G-GQGNTDDYFEELRDLYQTYHVLV 184
Query: 241 KKYCKRCCIQISCLTASPTQ---LLLQFLD----LTDCSNVDDQG--LSLIVSNCPQLIY 291
K +S L + + Q L+ L + SN D+ LS+ +S CP LI
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS-CP-LIG 242
Query: 292 L-----YLRRCVKLTDIGIKYVPS-FCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLS 345
+ Y+ L G + P S LK + +Q GL + A
Sbjct: 243 VIQLAHYVVTAKLL---G--FTPGELRSYLK--GATGHSQ----GL-----VTAVA---- 282
Query: 346 VAKCDQVSDAGLKVIARRCYK-LRYLNARGCEAVSDDAI--TVLARSCTR--------LR 394
+A+ D S V R+ L ++ R EA + ++ ++L S L
Sbjct: 283 IAETD--SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 395 ALDIGKCDVSDAGLRALAESCPNIKKLSL 423
++ + V D + P K++ +
Sbjct: 341 ISNLTQEQVQDY-VNKTNSHLPAGKQVEI 368
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 56.4 bits (137), Expect = 8e-09
Identities = 65/387 (16%), Positives = 133/387 (34%), Gaps = 96/387 (24%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 75
L S + + + L + QG+ L YL L
Sbjct: 24 GIRAVLQKASVTDVVTQEELES---ITKLVVAGEKVASIQGIE----YLTNLEYLNLNGN 76
Query: 76 VKLTDI-----------------GIKYVPSF--CSQLKELSVSDCTQVTDFGLYELAKLG 116
++TDI I + + + L+EL +++ ++D + LA L
Sbjct: 77 -QITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED-NISD--ISPLANL- 131
Query: 117 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDI 176
+ L++ +SD L ++ L YL + V D +T +A + T L +L +
Sbjct: 132 TKMYSLNLGANHNLSD--LSPLS-NMTGLNYLTVTESK-VKD--VTPIA-NLTDLYSLSL 184
Query: 177 GKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS-VE 235
+ D + LA S ++ + + + +A L L I + +I+ +
Sbjct: 185 NYNQIED--ISPLA-SLTSLHYFTAYVNQI---TDITPVA-NMTRLNSLKIGNNKITDLS 237
Query: 236 GYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI--VSNCPQLIYLY 293
++ L+ L +L++ +S I V + +L L
Sbjct: 238 P--------------LANLSQ------LTWLEI------GTNQISDINAVKDLTKLKMLN 271
Query: 294 LRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQ 351
+ +++DI SQL L +++ Q+ + + + L L L +++
Sbjct: 272 VGSN-QISDI-----SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGL-TNLTTLFLSQN-H 322
Query: 352 VSD----AGLKVIARRCYKLRYLNARG 374
++D A L K+ +
Sbjct: 323 ITDIRPLASLS-------KMDSADFAN 342
Score = 56.0 bits (136), Expect = 8e-09
Identities = 53/295 (17%), Positives = 102/295 (34%), Gaps = 64/295 (21%)
Query: 167 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLN 226
+ K V+D + E +I KL + + + +G++ Y L+ LN
Sbjct: 20 DLAEGIRAVLQKASVTD--VVTQEE-LESITKLVVAGEKVASIQGIE----YLTNLEYLN 72
Query: 227 IQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI--VS 284
+ QI+ +S L L L + ++ I +
Sbjct: 73 LNGNQITD-------------ISPLSNLVK------LTNLYIGTNK------ITDISALQ 107
Query: 285 NCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDFGLYELAKLGATLR 342
N L LYL ++DI +++ L++ ++D L L+ + L
Sbjct: 108 NLTNLRELYLNED-NISDI-----SPLANLTKMYSLNLGANHNLSD--LSPLSNMTG-LN 158
Query: 343 YLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLA--RSCTRLRALDIGK 400
YL+V + +V D + IA L L+ ++ + I ++ S T L
Sbjct: 159 YLTVTES-KVKD--VTPIA-NLTDLYSLS------LNYNQIEDISPLASLTSLHYFTAYV 208
Query: 401 CDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
++D + + + + L + + + +A L L I QIS
Sbjct: 209 NQITD--ITPV-ANMTRLNSLKIGNNKI---TDLSPLA-NLSQLTWLEIGTNQIS 256
Score = 53.3 bits (129), Expect = 6e-08
Identities = 58/318 (18%), Positives = 115/318 (36%), Gaps = 68/318 (21%)
Query: 144 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQ 203
+ L G + S I T L L++ ++D + L + + L +
Sbjct: 45 SITKLVVAGEKVASIQGIE----YLTNLEYLNLNGNQITD--ISPL-SNLVKLTNLYIGT 97
Query: 204 CDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLL 263
+ + + L++L + + IS IS L +
Sbjct: 98 NKI---TDISALQN-LTNLRELYLNEDNIS----------------DISPLANLTK---M 134
Query: 264 QFLDLTDCSNVDDQGLSLI--VSNCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELS 319
L+L LS + +SN L YL + K+ D+ + L LS
Sbjct: 135 YSLNLGAN-----HNLSDLSPLSNMTGLNYLTVTES-KVKDV-----TPIANLTDLYSLS 183
Query: 320 VSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVS 379
++ Q+ D + LA L + L Y + Q++D + +A +L L +
Sbjct: 184 LNY-NQIED--ISPLASLTS-LHYFTAYVN-QITD--ITPVAN-MTRLNSLK------IG 229
Query: 380 DDAITVLA--RSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCI 437
++ IT L+ + ++L L+IG +SD + A+ + +K L++ + + +
Sbjct: 230 NNKITDLSPLANLSQLTWLEIGTNQISD--INAV-KDLTKLKMLNVGSNQI---SDISVL 283
Query: 438 AYYCRGLQQLNIQDCQIS 455
L L + + Q+
Sbjct: 284 NN-LSQLNSLFLNNNQLG 300
Score = 42.1 bits (100), Expect = 3e-04
Identities = 45/263 (17%), Positives = 89/263 (33%), Gaps = 57/263 (21%)
Query: 221 GLQQLNIQDCQIS----VEGYRAVKK-YCKRCCIQ----ISCLTASPTQLLLQFLDLTDC 271
G L I+ + ++ + L + + L +
Sbjct: 1 GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELES------ITKLVVAGE 54
Query: 272 SNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI-----------------GIKYVPSF--C 312
QG+ L YL L ++TDI I + +
Sbjct: 55 KVASIQGI----EYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNKITDISALQNL 109
Query: 313 SQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNA 372
+ L+EL +++ ++D + LA L + L++ +SD L ++ L YL
Sbjct: 110 TNLRELYLNED-NISD--ISPLANL-TKMYSLNLGANHNLSD--LSPLS-NMTGLNYLTV 162
Query: 373 RGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDR 432
+ V D +T +A + T L +L + + D + LA S ++ + +
Sbjct: 163 TESK-VKD--VTPIA-NLTDLYSLSLNYNQIED--ISPLA-SLTSLHYFTAYVNQI---T 212
Query: 433 GVQCIAYYCRGLQQLNIQDCQIS 455
+ +A L L I + +I+
Sbjct: 213 DITPVA-NMTRLNSLKIGNNKIT 234
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 56.2 bits (136), Expect = 1e-08
Identities = 82/489 (16%), Positives = 144/489 (29%), Gaps = 90/489 (18%)
Query: 7 LTASPTQLL--LQFLDLTDCSCIQISCLTASPTQLL--LQFLDLTDC--SNVDDQGLSLI 60
L P L + L+ + + + + L L FLDLT C + +
Sbjct: 24 LNEIPGTLPNSTECLEFSFN---VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ-- 78
Query: 61 VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC--TQVTDFGLYELAKLGAT 118
+ +L L L L + + S LK L + + L+ L
Sbjct: 79 --SQHRLDTLVLTAN-PLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL--- 131
Query: 119 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGC--EAVSDDAITVL------------ 164
L + +S L KL+ L+ + +S + ++ L
Sbjct: 132 -ESLYLGSN-HISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188
Query: 165 ---------ARSCTRLRALDIGKCDVSDAGLRALA-ESCPNIKKLSLRQCDLVTDRGVQC 214
A ++L+ G + L + ++ + D
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248
Query: 215 IAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNV 274
++ +N+Q C + LQ LDL +
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNT-----------FHCFSG------LQELDL---TAT 288
Query: 275 DDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYEL 334
L + L L L K ++ + S L LS+ T+ + G L
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSAN-KFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCL 346
Query: 335 AKLGATLRYLSVAKCD-QVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLAR----S 389
L LR L ++ D + SD + R L+ LN +S + L
Sbjct: 347 ENLE-NLRELDLSHDDIETSDCCNLQL-RNLSHLQSLN------LSYNEPLSLKTEAFKE 398
Query: 390 CTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRG---LQQ 446
C +L LD+ + ++ ++ +K L+L L G LQ
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-----SSEQLFDGLPALQH 453
Query: 447 LNIQDCQIS 455
LN+Q
Sbjct: 454 LNLQGNHFP 462
Score = 51.2 bits (123), Expect = 5e-07
Identities = 49/312 (15%), Positives = 99/312 (31%), Gaps = 37/312 (11%)
Query: 16 LQFLDLTDCSCIQISCLT-ASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRR 74
L D IS ++ ++ ++L + + L L L
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQELDLTA 287
Query: 75 CVKLTDIGIKYVPSF---CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVS 131
+ +PS S LK+L +S + + + + L +LS+ +
Sbjct: 288 T------HLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPS-LTHLSIKGNTKRL 339
Query: 132 DAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE 191
+ G + LR L+ + + D + R+ + L++L++ + A
Sbjct: 340 ELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK- 397
Query: 192 SCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQI 251
CP ++ L L L + Q L+ LN+ + + +
Sbjct: 398 ECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-----------F 445
Query: 252 SCLTASPTQLLLQFLDLTDCSNVDDQGLSL-IVSNCPQLIYLYLRRCVKLTDIGIKYVPS 310
L A LQ L+L + +L L L C L+ I ++ +
Sbjct: 446 DGLPA------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSI-DQHAFT 497
Query: 311 FCSQLKELSVSD 322
+ + +S
Sbjct: 498 SLKMMNHVDLSH 509
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 53.9 bits (130), Expect = 4e-08
Identities = 59/262 (22%), Positives = 99/262 (37%), Gaps = 53/262 (20%)
Query: 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQ 228
+ GK +V+D A+ I LS + T GVQ Y L L ++
Sbjct: 19 ANAIKIAAGKSNVTD--TVTQAD-LDGITTLSAFGTGVTTIEGVQ----YLNNLIGLELK 71
Query: 229 DCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQ 288
D QI+ ++ L + L+L+ + + +
Sbjct: 72 DNQIT----------------DLAPLKNLTK---ITELELSGNPLKNVSAI----AGLQS 108
Query: 289 LIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSV 346
+ L L ++TD+ S L+ L + Q+T+ + LA L L+YLS+
Sbjct: 109 IKTLDLTST-QITDV-----TPLAGLSNLQVLYLDLN-QITN--ISPLAGL-TNLQYLSI 158
Query: 347 AKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDA 406
QVSD L +A KL L A + +SD I+ LA S L + + +SD
Sbjct: 159 GNA-QVSD--LTPLA-NLSKLTTLKADDNK-ISD--ISPLA-SLPNLIEVHLKNNQISD- 209
Query: 407 GLRALAESCPNIKKLSLRQCDL 428
+ L + N+ ++L +
Sbjct: 210 -VSPL-ANTSNLFIVTLTNQTI 229
Score = 42.4 bits (100), Expect = 2e-04
Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 51/194 (26%)
Query: 263 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI-GIKYVPSFCSQLKELSVS 321
+ + D + + + L +T I G++Y + L L +
Sbjct: 21 AIKIAAGKSNVTDTVTQA----DLDGITTLSAFGT-GVTTIEGVQY----LNNLIGLELK 71
Query: 322 DCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD 381
D Q+TD L L L K+ L G + +
Sbjct: 72 DN-QITD--LAPLKNL---------------------------TKITELELSGNP-LKN- 99
Query: 382 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 441
++ +A ++ LD+ ++D + L N++ L L + + +A
Sbjct: 100 -VSAIA-GLQSIKTLDLTSTQITD--VTPL-AGLSNLQVLYLDLNQI---TNISPLAG-L 150
Query: 442 RGLQQLNIQDCQIS 455
LQ L+I + Q+S
Sbjct: 151 TNLQYLSIGNAQVS 164
Score = 35.0 bits (81), Expect = 0.039
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 21/139 (15%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 75
++ LDLT ++ L LQ L L + L+ L YL +
Sbjct: 109 IKTLDLTSTQITDVTPLAGLSN---LQVLYLDLNQITNISPLA----GLTNLQYLSIGNA 161
Query: 76 VKLTDI-GIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAG 134
+++D+ + S+L L D +++D + LA L L + + Q+SD
Sbjct: 162 -QVSDLTPLAN----LSKLTTLKADD-NKISD--ISPLASL-PNLIEVHLKNN-QISD-- 209
Query: 135 LKVIARRCYKLRYLNARGC 153
+ +A L +
Sbjct: 210 VSPLA-NTSNLFIVTLTNQ 227
Score = 34.7 bits (80), Expect = 0.061
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 391 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQ 450
+ GK +V+D A+ I LS + T GVQ Y L L ++
Sbjct: 19 ANAIKIAAGKSNVTD--TVTQAD-LDGITTLSAFGTGVTTIEGVQ----YLNNLIGLELK 71
Query: 451 DCQIS 455
D QI+
Sbjct: 72 DNQIT 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 52.3 bits (126), Expect = 5e-08
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 33/171 (19%)
Query: 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQ 228
L + + +V+D L + E NIK L++ I+ L++L I
Sbjct: 44 NSLTYITLANINVTD--LTGI-EYAHNIKDLTINNIHA---TNYNPISG-LSNLERLRIM 96
Query: 229 DCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQ 288
++ + +S LT+ L LD++ DD L+ I + P+
Sbjct: 97 GKDVTSDKIPN-----------LSGLTS------LTLLDISHS-AHDDSILTKI-NTLPK 137
Query: 289 LIYLYLRRCVKLTDI-GIKYVPSFCSQLKELSVSDCTQVTDF-GLYELAKL 337
+ + L +TDI +K +P +LK L++ V D+ G+ + KL
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLP----ELKSLNIQFD-GVHDYRGIEDFPKL 183
Score = 49.6 bits (119), Expect = 3e-07
Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 42/176 (23%)
Query: 281 LIVSNCPQLIYLYLRRCVKLTDI-GIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGA 339
+ + L Y+ L +TD+ GI+Y +K+L++++ T+ ++ L
Sbjct: 38 ITEAQMNSLTYITLANI-NVTDLTGIEY----AHNIKDLTINNI-HATN--YNPISGLS- 88
Query: 340 TLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIG 399
L L G + V+ D I L+ T L LDI
Sbjct: 89 --------------------------NLERLRIMGKD-VTSDKIPNLS-GLTSLTLLDIS 120
Query: 400 KCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
D+ L + P + + L +TD + + L+ LNIQ +
Sbjct: 121 HSAHDDSILTKINT-LPKVNSIDLSYNGAITD--IMPLKT-LPELKSLNIQFDGVH 172
Score = 46.5 bits (111), Expect = 4e-06
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL--LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLR 73
L+ L + ++ L L LD++ DD L+ I + P++ + L
Sbjct: 90 LERLRIMGK---DVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLS 144
Query: 74 RCVKLTDI-GIKYVPSFCSQLKELSVSDCTQVTDF-GLYELAKL 115
+TDI +K +P +LK L++ V D+ G+ + KL
Sbjct: 145 YNGAITDIMPLKTLP----ELKSLNIQFD-GVHDYRGIEDFPKL 183
Score = 36.1 bits (84), Expect = 0.013
Identities = 16/148 (10%), Positives = 44/148 (29%), Gaps = 18/148 (12%)
Query: 317 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCE 376
+ + + L + +++A + L Y+
Sbjct: 5 QTGLKASQDNVNIPDSTFKAY--LNGLLGQSSTANITEAQMN-------SLTYITLANIN 55
Query: 377 AVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQC 436
V+D +T + ++ L I ++ ++ N+++L + D+ T +
Sbjct: 56 -VTD--LTGIE-YAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMGKDV-TSDKIPN 107
Query: 437 IAYYCRGLQQLNIQDCQISVEGYRAVKK 464
++ L L+I +
Sbjct: 108 LSG-LTSLTLLDISHSAHDDSILTKINT 134
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 51.5 bits (124), Expect = 6e-08
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 14/132 (10%)
Query: 118 TLRYLSVAKCDQVSDAGLKVIA---RRCYKLRYLNARGCEAVSDDAITVLA---RSCTRL 171
L +++ + LK A + ++ + G +D LA + L
Sbjct: 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTL 95
Query: 172 RALDIGKCDVSDAGLRALAES---CPNIKKLSLR-QCDLVTDRGVQCIAY---YCRGLQQ 224
++L++ +S +G+ AL E+ ++ +L + Q + + IA L +
Sbjct: 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155
Query: 225 LNIQDCQISVEG 236
Q
Sbjct: 156 FGYHFTQQGPRL 167
Score = 51.5 bits (124), Expect = 6e-08
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 14/132 (10%)
Query: 340 TLRYLSVAKCDQVSDAGLKVIA---RRCYKLRYLNARGCEAVSDDAITVLA---RSCTRL 393
L +++ + LK A + ++ + G +D LA + L
Sbjct: 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTL 95
Query: 394 RALDIGKCDVSDAGLRALAES---CPNIKKLSLR-QCDLVTDRGVQCIAY---YCRGLQQ 446
++L++ +S +G+ AL E+ ++ +L + Q + + IA L +
Sbjct: 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155
Query: 447 LNIQDCQISVEG 458
Q
Sbjct: 156 FGYHFTQQGPRL 167
Score = 44.6 bits (106), Expect = 2e-05
Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 25/149 (16%)
Query: 158 DDAITVLARSCTRLRALDIG-KCDVSDAGLRALAESCPN---IKKLSLRQCDLVTDRGVQ 213
++ + + + L +++ ++ L+A AE+ +KK S+ D
Sbjct: 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAF 83
Query: 214 CIAYYCR---GLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTD 270
+A + L+ LN++ IS G A+ + L ++ + L L + +
Sbjct: 84 ALAEMLKVNNTLKSLNVESNFISGSGILAL----------VEALQSNTS---LIELRIDN 130
Query: 271 CSN-VDDQG---LSLIVSNCPQLIYLYLR 295
S + + ++ ++ L+
Sbjct: 131 QSQPLGNNVEMEIANMLEKNTTLLKFGYH 159
Score = 43.4 bits (103), Expect = 4e-05
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 380 DDAITVLARSCTRLRALDIG-KCDVSDAGLRALAESCPN---IKKLSLRQCDLVTDRGVQ 435
++ + + + L +++ ++ L+A AE+ +KK S+ D
Sbjct: 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAF 83
Query: 436 CIAYYCR---GLQQLNIQDCQISVEGYRA 461
+A + L+ LN++ IS G A
Sbjct: 84 ALAEMLKVNNTLKSLNVESNFISGSGILA 112
Score = 30.0 bits (68), Expect = 1.3
Identities = 8/73 (10%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 170 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRG---LQQLN 226
+ + DV + L+ + + P++++++L + ++ A + +++ +
Sbjct: 13 PVPDEEPNSTDVEET-LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFS 71
Query: 227 IQDCQISVEGYRA 239
I + + A
Sbjct: 72 IVGTRSNDPVAFA 84
Score = 30.0 bits (68), Expect = 1.3
Identities = 8/73 (10%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 392 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRG---LQQLN 448
+ + DV + L+ + + P++++++L + ++ A + +++ +
Sbjct: 13 PVPDEEPNSTDVEET-LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFS 71
Query: 449 IQDCQISVEGYRA 461
I + + A
Sbjct: 72 IVGTRSNDPVAFA 84
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 54.1 bits (130), Expect = 7e-08
Identities = 59/444 (13%), Positives = 116/444 (26%), Gaps = 93/444 (20%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 75
LQ + + T + + + +++ LS SN L + L C
Sbjct: 450 LQIIYFANSP------FTYDNIAVDWEDANSDYAKQYENEELSW--SNLKDLTDVELYNC 501
Query: 76 VKLTDIGIKYVPSF---CSQLKELSVSD----CTQVTDFGLYELAKL---GATLRYLSVA 125
+T + P F +L+ L+++ LA G ++ +
Sbjct: 502 PNMTQL-----PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556
Query: 126 KCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLA--RSCTRLRALDIGKCDVSD 183
+ + ++ KL L+ + + L + +L L + +
Sbjct: 557 YN-NLEEFPASASLQKMVKLGLLD------CVHNKVRHLEAFGTNVKLTDLKLDYNQIE- 608
Query: 184 AGL-RALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKK 242
+ ++ L L + + ++ +I EG
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCS 666
Query: 243 YCKRCCIQISCL-------TASPTQLL-----LQFLDL-----TDCSNVDDQGLSLIVSN 285
I S + PT+L + + L T + N
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726
Query: 286 CPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLS 345
L + LR KLT + + + L + VS + S
Sbjct: 727 TYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN---------CFSSFPTQPLNSS 776
Query: 346 VAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAI-TVLARS---CTRLRALDIGKC 401
+L+ R + I C L L IG
Sbjct: 777 --------------------QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816
Query: 402 DVSDAGLRAL-AESCPNIKKLSLR 424
D +R + + P + L +
Sbjct: 817 D-----IRKVDEKLTPQLYILDIA 835
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 53.9 bits (130), Expect = 8e-08
Identities = 74/483 (15%), Positives = 144/483 (29%), Gaps = 107/483 (22%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL-----LQFLDLTDC--SNVDDQGLSLIVSNCPQLI 68
L+ L+L L+ + L L L + + LI
Sbjct: 75 LKVLNLQHNE------LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV----KQKNLI 124
Query: 69 YLYLRRCVKLTDIGIKYVPSFC--SQLKELSVSDCTQVTDFGLYELAKLGAT-LRYLSVA 125
L L L+ + + L+EL +S+ ++ EL + L+ L +
Sbjct: 125 TLDLSHN-GLSSTK---LGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLEL- 178
Query: 126 KCDQVSDAGLKVIA----RRCYKLRYLNARGCE-AVSDDAITVLARSCTRLRALDIGKCD 180
S +K + +L L + S L + T +R L +
Sbjct: 179 -----SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233
Query: 181 VSD------AGLRALAESCPNIKKLSLRQCDLVTDRGVQCIA-YYCRGLQQLNIQDCQIS 233
+S GL+ N+ L L +L V + + L+ ++ I
Sbjct: 234 LSTTSNTTFLGLK-----WTNLTMLDLSYNNL---NVVGNDSFAWLPQLEYFFLEYNNIQ 285
Query: 234 VEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIV---------S 284
+ + L +++L+L + Q +SL
Sbjct: 286 HLFSHS-----------LHGLFN------VRYLNLKR--SFTKQSISLASLPKIDDFSFQ 326
Query: 285 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD-CTQVTDFGLYELAKLGAT-LR 342
L +L + + I + + LK LS+S+ T + L + L
Sbjct: 327 WLKCLEHLNMEDN-DIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384
Query: 343 YLSVAKCDQVSDAGLKVIA----RRCYKLRYLNARGCE---AVSDDAITVLARSCTRLRA 395
L++ K + I L L+ E ++ R +
Sbjct: 385 ILNLTKN------KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW----RGLENIFE 434
Query: 396 LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIA---YYCRGLQQLNIQDC 452
+ + + A P++++L LR+ L + V R L L++ +
Sbjct: 435 IYLSYNKYLQLTRNSFAL-VPSLQRLMLRRVAL---KNVDSSPSPFQPLRNLTILDLSNN 490
Query: 453 QIS 455
I+
Sbjct: 491 NIA 493
Score = 52.3 bits (126), Expect = 3e-07
Identities = 66/486 (13%), Positives = 148/486 (30%), Gaps = 94/486 (19%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL--LQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLY 71
+ D + LT P L + L+LT + + QL L
Sbjct: 6 HEVADCSHLK------LTQVPDDLPTNITVLNLTHNQLRRLPAANFT----RYSQLTSLD 55
Query: 72 LRRCVKLTDI-------------------GIKYVP----SFCSQLKELSVSDCTQVTDFG 108
+ ++ + + + +FC+ L EL + +
Sbjct: 56 VGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIK 113
Query: 109 LYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGC--EAVSDDAITVLAR 166
K L L ++ +S L + L+ L +A+ + + +
Sbjct: 114 NNPFVKQKN-LITLDLSHN-GLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIF-- 168
Query: 167 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDR-GVQCIAYYCRGLQQL 225
+ + L+ L++ + + + + L L L C+ ++ L
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227
Query: 226 NIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLL-LQFLDLTDC--SNVDDQGLSLI 282
++ + Q+S S T + L LDL+ + V +
Sbjct: 228 SLSNSQLST----------------TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--- 268
Query: 283 VSNCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDFGLYELAKLGA- 339
+ PQL Y +L + + + S ++ L++ L L K+
Sbjct: 269 -AWLPQLEYFFLEYN-NIQHL---FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 340 ------TLRYLSVAKCDQVSDAGLKVIARRCYKLRYL----NARGCEAVSDDAITVLARS 389
L +L++ + + L+YL + ++++ LA S
Sbjct: 324 SFQWLKCLEHLNMEDN-DIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 390 CTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNI 449
L L++ K +S A + +++ L L ++ + Q + ++ +
Sbjct: 382 --PLHILNLTKNKISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYL 437
Query: 450 QDCQIS 455
+
Sbjct: 438 SYNKYL 443
Score = 48.5 bits (116), Expect = 4e-06
Identities = 53/336 (15%), Positives = 99/336 (29%), Gaps = 69/336 (20%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL--LQFLDLTDCSNVDDQGLSLIV---------SNC 64
L++ L I L + L +++L+L + Q +SL
Sbjct: 274 LEYFFLEYN---NIQHLFSHSLHGLFNVRYLNLKR--SFTKQSISLASLPKIDDFSFQWL 328
Query: 65 PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD-CTQVTDFGLYELAKLGAT-LRYL 122
L +L + + I + + LK LS+S+ T + L + L L
Sbjct: 329 KCLEHLNMEDN-DIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 123 SVAKCDQVSDAGLKVIA----RRCYKLRYLNARGCE---AVSDDAITVLARSCTRLRALD 175
++ K + I L L+ E ++ R + +
Sbjct: 387 NLTKN------KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW----RGLENIFEIY 436
Query: 176 IGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIA---YYCRGLQQLNIQDCQI 232
+ + A P++++L LR+ L + V R L L++ + I
Sbjct: 437 LSYNKYLQLTRNSFAL-VPSLQRLMLRRVAL---KNVDSSPSPFQPLRNLTILDLSNNNI 492
Query: 233 SVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC------SNVDDQGLSLIVSNC 286
+ I L L+ LDL + + G +
Sbjct: 493 A--------------NINDDMLEGLEK---LEILDLQHNNLARLWKHANPGGPIYFLKGL 535
Query: 287 PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 322
L L L +I V +LK + +
Sbjct: 536 SHLHILNLESN-GFDEI-PVEVFKDLFELKIIDLGL 569
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 52.1 bits (125), Expect = 3e-07
Identities = 72/462 (15%), Positives = 138/462 (29%), Gaps = 65/462 (14%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 75
L+ LDL + L L L C D N L L L +
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHL-FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 76 VKLTDIGIKYVPSFCSQLKELSVSDC--TQVTDFGLYELAKLGATLRYLSVA----KCDQ 129
++ + + + LK + S V + L L TL + S+A
Sbjct: 134 -QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK--TLSFFSLAANSLYSRV 190
Query: 130 VSDAGLKVIARRCYKLRYLNARG-----------CEAVSDDAITVLARSCTRLRALDIGK 178
D G + R L L+ G A+S L + + G
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA-HHIMGAGFGF 249
Query: 179 CDVSDAGLRALAESC-PNIKKLSLRQCDLVTDRGVQCIAYYC-RGLQQLNIQDCQISVEG 236
++ D A +++ L L + + + + + L+ LN+ +I+
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFS---LNSRVFETLKDLKVLNLAYNKINK-- 304
Query: 237 YRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRR 296
I LQ L+L+ + + P++ Y+ L++
Sbjct: 305 ------------IADEAFYGLDN---LQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQK 347
Query: 297 CVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAG 356
+ I F +L+ L + D T + + + +LS K
Sbjct: 348 N-HIAIIQ-DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI-----FLSGNK-------- 392
Query: 357 LKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCP 416
L + + ++ + D + L R L+ L + + S P
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLR-VPHLQILILNQNRFSSCSGDQTPSENP 451
Query: 417 NIKKLSLRQCDLVTDRGVQCIAYYCRGLQQ---LNIQDCQIS 455
++++L L + L + GL L + ++
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Score = 31.3 bits (71), Expect = 0.73
Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 167 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIA-YYCRGLQQL 225
SC+ D L + + ++L L + R V + + LQ L
Sbjct: 1 SCS----FDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYI---RTVTASSFPFLEQLQLL 53
Query: 226 NIQDCQISVEGYRAVKKYCKRCCI------QISCLTASPTQLL--LQFLDLTDCSNVDDQ 277
+ + + + I +I L Q L L L L C D
Sbjct: 54 ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
Query: 278 GLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC 323
N L L L + ++ + + + LK + S
Sbjct: 114 LKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 50.1 bits (120), Expect = 5e-07
Identities = 47/298 (15%), Positives = 90/298 (30%), Gaps = 76/298 (25%)
Query: 41 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI-GIKYVPSFCSQLKELSVS 99
+L S D + + + + + GI+Y + +L ++
Sbjct: 26 TIKDNLKKKSVTDAVTQN----ELNSIDQIIANNS-DIKSVQGIQY----LPNVTKLFLN 76
Query: 100 DCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD 159
++TD + LA L L +L + + +V D
Sbjct: 77 G-NKLTD--IKPLANL-KNLGWLFLDEN-KVKD--------------------------- 104
Query: 160 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 219
++ L +L++L + +SD + L P ++ L L + +
Sbjct: 105 -LSSLK-DLKKLKSLSLEHNGISD--INGL-VHLPQLESLYLGNNKITDITVLS----RL 155
Query: 220 RGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGL 279
L L+++D QIS I L LQ L L+ D + L
Sbjct: 156 TKLDTLSLEDNQIS----------------DIVPLAGLTK---LQNLYLSKNHISDLRAL 196
Query: 280 SLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKL 337
+ L L L + + I S + +D + VT + +
Sbjct: 197 ----AGLKNLDVLELFSQ-ECLNKPI-NHQSNLVVPNTVKNTDGSLVTPEIISDDGDY 248
Score = 43.5 bits (103), Expect = 7e-05
Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 51/194 (26%)
Query: 263 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI-GIKYVPSFCSQLKELSVS 321
+L S D + + + + + GI+Y + +L ++
Sbjct: 26 TIKDNLKKKSVTDAVTQN----ELNSIDQIIANNS-DIKSVQGIQY----LPNVTKLFLN 76
Query: 322 DCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD 381
++TD + LA L L +L + + +V D
Sbjct: 77 G-NKLTD--IKPLANL-KNLGWLFLDEN-KVKD--------------------------- 104
Query: 382 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 441
++ L +L++L + +SD + L P ++ L L + +
Sbjct: 105 -LSSLK-DLKKLKSLSLEHNGISD--INGL-VHLPQLESLYLGNNKITDITVLS----RL 155
Query: 442 RGLQQLNIQDCQIS 455
L L+++D QIS
Sbjct: 156 TKLDTLSLEDNQIS 169
Score = 33.1 bits (76), Expect = 0.18
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 18/103 (17%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLYLR 73
L+ L L + +I+ +T L L L D S++ ++ +L LYL
Sbjct: 136 LESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLS 186
Query: 74 RCVKLTDI-GIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKL 115
+ ++D+ + L L + + + + + L
Sbjct: 187 KN-HISDLRALAG----LKNLDVLELFSQ-ECLNKPINHQSNL 223
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 50.9 bits (122), Expect = 7e-07
Identities = 75/464 (16%), Positives = 159/464 (34%), Gaps = 75/464 (16%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL--LQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLY 71
LQ L L +I+ + L L+ LDL+D S++ L YL
Sbjct: 52 LQVLILKSS---RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG----PLSSLKYLN 104
Query: 72 LRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKC--DQ 129
L +G+ + + L+ L + + ++ + A L + L L +
Sbjct: 105 LMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRN 162
Query: 130 VSDAGLKVIARRCYKLRYLNARGC--EAVSDDAITVLARSCTRLRALDIGKCDVSDAGLR 187
LK I + +L + + +L + +R L++ +++
Sbjct: 163 YQSQSLKSI----RDIHHLTLHLSESAFLLEIFADIL----SSVRYLELRDTNLARFQFS 214
Query: 188 ALA--ESCPNIKKLSLRQCDLV--TDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKY 243
L E +KKL+ R L + + + Y L ++ DC ++ G +
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE- 273
Query: 244 CKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI 303
+ + ++ L + LS + S ++ + + K+ +
Sbjct: 274 -----SDVVSELGKVETVTIRRLHIPQ--FYLFYDLSTVYSLLEKVKRITVENS-KVFLV 325
Query: 304 GIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGA--TLRYLSVAKCDQVSDAGLKVIA 361
L+ L +S+ + + L A GA +L+ L + S L+ +
Sbjct: 326 PCS-FSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVL------SQNHLRSMQ 377
Query: 362 RRCY------KLRYLNARGCEAVSDDAITVLARSC---TRLRALDIGKCDVSDAGLRALA 412
+ L L+ +S + + SC ++R L++ S G+R +
Sbjct: 378 KTGEILLTLKNLTSLD------ISRNTFHPMPDSCQWPEKMRFLNL-----SSTGIRVVK 426
Query: 413 ESCP-NIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
P ++ L + +L + + + LQ+L I ++
Sbjct: 427 TCIPQTLEVLDVSNNNLDS------FSLFLPRLQELYISRNKLK 464
Score = 34.7 bits (80), Expect = 0.065
Identities = 38/242 (15%), Positives = 86/242 (35%), Gaps = 50/242 (20%)
Query: 14 LLLQFLDLTDCSCIQISCLTASPTQLL----------LQFLDLTDCSNVDDQGLSLIVSN 63
L L ++ DC+ + S + ++ ++ L + LS + S
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ--FYLFYDLSTVYSL 308
Query: 64 CPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGA--TLRY 121
++ + + K+ + L+ L +S+ + + L A GA +L+
Sbjct: 309 LEKVKRITVENS-KVFLVPCS-FSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQT 365
Query: 122 LSVAKCDQVSDAGLKVIARRCY------KLRYLNARGCEAVSDDAITVLARSC---TRLR 172
L + S L+ + + L L+ +S + + SC ++R
Sbjct: 366 LVL------SQNHLRSMQKTGEILLTLKNLTSLD------ISRNTFHPMPDSCQWPEKMR 413
Query: 173 ALDIGKCDVSDAGLRALAESCP-NIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ 231
L++ S G+R + P ++ L + +L + + + LQ+L I +
Sbjct: 414 FLNL-----SSTGIRVVKTCIPQTLEVLDVSNNNLDS------FSLFLPRLQELYISRNK 462
Query: 232 IS 233
+
Sbjct: 463 LK 464
Score = 33.5 bits (77), Expect = 0.15
Identities = 77/466 (16%), Positives = 159/466 (34%), Gaps = 65/466 (13%)
Query: 23 DCSCIQISCLTASPTQLL--LQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLYLRRCVKL 78
D T+ P+ L ++ LDL+ + + L C L L L+ ++
Sbjct: 11 DGRSRS---FTSIPSGLTAAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSS-RI 62
Query: 79 TDIGIKYVPSFCSQLKELSVSDC--TQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLK 136
I L+ L +SD + ++ L+ L+YL++ G+
Sbjct: 63 NTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS----LKYLNLMGN-PYQTLGVT 116
Query: 137 VIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNI 196
+ L+ L E S+ T L L+I + + ++L +S +I
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSL-KSIRDI 174
Query: 197 KKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI-----SVEGYRAVKKYCKRCCIQI 251
L+L + ++ A ++ L ++D + S V K+ +
Sbjct: 175 HHLTLHLSESAFL--LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 252 SCLTASPTQLL---------LQFLDLTDCS----NVDDQGLSLIVSNCPQLIYLYLRRCV 298
S LT L L ++ DC+ + S +VS ++ + +RR +
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR-L 291
Query: 299 KLTDIGIKYVPSF----CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSD 354
+ + Y S ++K ++V + +V L +L +L +++ + +
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLK-SLEFLDLSEN-LMVE 348
Query: 355 AGLK--VIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALA 412
LK L+ L S + + L +LDI S +
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI-----SRNTFHPMP 403
Query: 413 ESC---PNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
+SC ++ L+L + + L+ L++ + +
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRV-----VKTCIPQTLEVLDVSNNNLD 444
Score = 30.5 bits (69), Expect = 1.5
Identities = 47/289 (16%), Positives = 95/289 (32%), Gaps = 48/289 (16%)
Query: 179 CDVSDAGLRALAESCP-NIKKLSLRQCDL--VTDRGVQCIAYYCRGLQQLNIQDCQISVE 235
CD ++ +K L L + + ++ C LQ L ++ +I+
Sbjct: 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSSRINTI 65
Query: 236 GYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLY 293
A L + L+ LDL+D S++ L YL
Sbjct: 66 EGDA-----------FYSLGS------LEHLDLSDNHLSSLSSSWF----GPLSSLKYLN 104
Query: 294 LRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKC--DQ 351
L +G+ + + L+ L + + ++ + A L + L L +
Sbjct: 105 LMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRN 162
Query: 352 VSDAGLKVIARRCYKLRYLNARGC--EAVSDDAITVLARSCTRLRALDIGKCDVSDAGLR 409
LK I + +L + + +L + +R L++ +++
Sbjct: 163 YQSQSLKSI----RDIHHLTLHLSESAFLLEIFADIL----SSVRYLELRDTNLARFQFS 214
Query: 410 ALA--ESCPNIKKLSLRQCDLV--TDRGVQCIAYYCRGLQQLNIQDCQI 454
L E +KKL+ R L + + + Y L ++ DC +
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 50.9 bits (121), Expect = 7e-07
Identities = 43/277 (15%), Positives = 94/277 (33%), Gaps = 50/277 (18%)
Query: 62 SNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF-GLYELAKLGATLR 120
+ I L++ +TD + + + + ++ ++ + G+ L +
Sbjct: 18 DAFAETIKDNLKKK-SVTDAVTQ---NELNSIDQIIANNS-DIKSVQGIQYLPNV----T 68
Query: 121 YLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD 180
L + +++D +K + L +L + + D ++ L +L++L +
Sbjct: 69 KLFLNGN-KLTD--IKPLTN-LKNLGWLFLDENK-IKD--LSSLK-DLKKLKSLSLEHNG 120
Query: 181 VSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAV 240
+SD + L P ++ L L + + ++ L L+++D QIS
Sbjct: 121 ISD--INGL-VHLPQLESLYLGNNKITD---ITVLSR-LTKLDTLSLEDNQIS------- 166
Query: 241 KKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKL 300
I L LQ L L+ D + L + L L L +
Sbjct: 167 ---------DIVPLAGLTK---LQNLYLSKNHISDLRAL----AGLKNLDVLELFSQ-EC 209
Query: 301 TDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKL 337
+ I S + +D + VT + +
Sbjct: 210 LNKPI-NHQSNLVVPNTVKNTDGSLVTPEIISDDGDY 245
Score = 47.8 bits (113), Expect = 5e-06
Identities = 27/173 (15%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 284 SNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF-GLYELAKLGATLR 342
+ I L++ +TD + + + + ++ ++ + G+ L +
Sbjct: 18 DAFAETIKDNLKKK-SVTDAVTQ---NELNSIDQIIANNS-DIKSVQGIQYLPNV----T 68
Query: 343 YLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD 402
L + +++D +K + L +L + + D ++ L +L++L +
Sbjct: 69 KLFLNGN-KLTD--IKPLTN-LKNLGWLFLDENK-IKD--LSSLK-DLKKLKSLSLEHNG 120
Query: 403 VSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
+SD + L P ++ L L + + ++ L L+++D QIS
Sbjct: 121 ISD--INGL-VHLPQLESLYLGNNKITD---ITVLSR-LTKLDTLSLEDNQIS 166
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 48.0 bits (115), Expect = 3e-06
Identities = 48/345 (13%), Positives = 87/345 (25%), Gaps = 102/345 (29%)
Query: 7 LTASPTQL----LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVS 62
L L D ++ + L +
Sbjct: 25 LRPYHDVLSQWQRHYNADRNRWHSAW------RQANSNNPQIETRTGRALKATADLLEDA 78
Query: 63 NCPQLIYLYLRRCVKLTDIGIKYVPSF---CSQLKELSVSDCTQVTDFGLYELAKLGATL 119
P + L LR + P S L+ +++ L +L T+
Sbjct: 79 TQPGRVALELRSV------PLPQFPDQAFRLSHLQHMTIDAA---------GLMELPDTM 123
Query: 120 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARS---CTRLRALDI 176
+ + L L + L S RLR L I
Sbjct: 124 QQFA--------------------GLETLTLARNP------LRALPASIASLNRLRELSI 157
Query: 177 GKC--------DVSDAGLRALAESCPNIKKLSLRQCDLVT---DRGVQCIAYYCRGLQQL 225
C ++ + N++ L L + + + L+ L
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA------NLQNLKSL 211
Query: 226 NIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSN 285
I++ + I L L+ LDL C+ + + I
Sbjct: 212 KIRNSPL------------SALGPAIHHLPK------LEELDLRGCTAL--RNYPPIFGG 251
Query: 286 CPQLIYLYLRRCVKLTDIGIKYVPSF---CSQLKELSVSDCTQVT 327
L L L+ C L + P +QL++L + C ++
Sbjct: 252 RAPLKRLILKDCSNLLTL-----PLDIHRLTQLEKLDLRGCVNLS 291
Score = 36.1 bits (84), Expect = 0.021
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 27/99 (27%)
Query: 16 LQFLDLTDCSCIQ-----ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI---VSNCPQL 67
L+ LDL C+ ++ L+ L L DCSN L + + QL
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAP------LKRLILKDCSN-----LLTLPLDIHRLTQL 279
Query: 68 IYLYLRRCVKLTDIGIKYVP---SFCSQLKELSVSDCTQ 103
L LR CV L+ + P + + V Q
Sbjct: 280 EKLDLRGCVNLSRL-----PSLIAQLPANCIILVPPHLQ 313
Score = 35.3 bits (82), Expect = 0.032
Identities = 45/284 (15%), Positives = 87/284 (30%), Gaps = 63/284 (22%)
Query: 166 RSCTRLRAL--DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIA-----YY 218
+ T LR + + R S + Q + T R ++ A
Sbjct: 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDAT 79
Query: 219 CRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQG 278
G L ++ + + Q L+ LQ + + ++
Sbjct: 80 QPGRVALELRSVPL------------PQFPDQAFRLSH------LQHMTIDAAGLME--- 118
Query: 279 LSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS---FCSQLKELSVSDCTQVT----DFGL 331
L + L L L R L + P+ ++L+ELS+ C ++T
Sbjct: 119 LPDTMQQFAGLETLTLARN-PLRAL-----PASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 332 YELAKLGATLRYLSVAKCDQVSDAGLKVIAR---RCYKLRYLNARGCEAVSDDAITVLAR 388
+ + L L + ++ G++ + L+ L R ++ L
Sbjct: 173 TDASGEHQGLVNL---QSLRLEWTGIRSLPASIANLQNLKSLKIRNSP------LSALGP 223
Query: 389 S---CTRLRALDIGKCDVSDAGLRALAES---CPNIKKLSLRQC 426
+ +L LD+ C LR +K+L L+ C
Sbjct: 224 AIHHLPKLEELDLRGCT----ALRNYPPIFGGRAPLKRLILKDC 263
Score = 32.2 bits (74), Expect = 0.30
Identities = 31/263 (11%), Positives = 65/263 (24%), Gaps = 74/263 (28%)
Query: 216 AYYCRGLQQLNIQDCQI------SVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLT 269
++ G + L Q + ++ + ++
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW----RQANSNNPQIETR 63
Query: 270 DCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF---CSQLKELSVSDCTQV 326
+ L + P + L LR + P S L+ +++
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSV------PLPQFPDQAFRLSHLQHMTIDAA--- 114
Query: 327 TDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVL 386
L +L T++ + L L + L
Sbjct: 115 ------GLMELPDTMQQFA--------------------GLETLTLARNP------LRAL 142
Query: 387 ARS---CTRLRALDIGKC--------DVSDAGLRALAESCPNIKKLSLRQCDLVT---DR 432
S RLR L I C ++ + N++ L L + +
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI 202
Query: 433 GVQCIAYYCRGLQQLNIQDCQIS 455
+ L+ L I++ +S
Sbjct: 203 A------NLQNLKSLKIRNSPLS 219
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 48.7 bits (116), Expect = 3e-06
Identities = 64/317 (20%), Positives = 108/317 (34%), Gaps = 70/317 (22%)
Query: 89 FCSQLKELSVSDCTQVTDFGLYEL-AKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRY 147
+ L+V + GL L L A + L + D L + +LR
Sbjct: 38 LNNGNAVLNVGES------GLTTLPDCLPAHITTLVI------PDNNLTSLPALPPELRT 85
Query: 148 LNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLV 207
L G + +T L L L + L L + KL + L
Sbjct: 86 LEVSGNQ------LTSLPVLPPGLLELS-----IFSNPLTHLPALPSGLCKLWIFGNQLT 134
Query: 208 TDRGVQCIAYYCRGLQQLNIQDCQISV--EGYRAVKK-YCKRCCIQISCLTASPTQLLLQ 264
+ + GLQ+L++ D Q++ + K + Q++ L P+ L Q
Sbjct: 135 S------LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNN--QLTSLPMLPSGL--Q 184
Query: 265 FLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCT 324
L ++D L+ + + +L L+ +LT + P+ S LKEL VS
Sbjct: 185 ELSVSDNQ------LASLPTLPSELYKLWAYNN-RLTSL-----PALPSGLKELIVSGNR 232
Query: 325 QVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAIT 384
L L L + L+ L VS L + L L+ V + +T
Sbjct: 233 ------LTSLPVLPSELKELM------VSGNRLTSLPMLPSGLLSLS------VYRNQLT 274
Query: 385 VLARS---CTRLRALDI 398
L S + +++
Sbjct: 275 RLPESLIHLSSETTVNL 291
Score = 46.4 bits (110), Expect = 2e-05
Identities = 56/276 (20%), Positives = 93/276 (33%), Gaps = 55/276 (19%)
Query: 51 NVDDQGL-SLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGL 109
NV + GL +L + L + LT + P+ +L+ L VS L
Sbjct: 46 NVGESGLTTLPDCLPAHITTLVIPDN-NLTSL-----PALPPELRTLEVSGN------QL 93
Query: 110 YELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCT 169
L L L L + L + L L + + +T L
Sbjct: 94 TSLPVLPPGLLEL------SIFSNPLTHLPALPSGLCKLW------IFGNQLTSLPVLPP 141
Query: 170 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQD 229
L+ L VSD L +L + KL L + GLQ+L++ D
Sbjct: 142 GLQEL-----SVSDNQLASLPALPSELCKLWAYNNQL------TSLPMLPSGLQELSVSD 190
Query: 230 CQISV--EGYRAVKK-YCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNC 286
Q++ + K + +++ L A P+ L+ L ++ L+ +
Sbjct: 191 NQLASLPTLPSELYKLWAYNN--RLTSLPALPSG--LKELIVSGNR------LTSLPVLP 240
Query: 287 PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 322
+L L + +LT + P S L LSV
Sbjct: 241 SELKELMVSGN-RLTSL-----PMLPSGLLSLSVYR 270
Score = 38.3 bits (89), Expect = 0.005
Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 40/177 (22%)
Query: 3 QISCLTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVS 62
Q++ L A P++L L + Q++ L P+ L Q L ++D L+ + +
Sbjct: 152 QLASLPALPSEL--CKLWAYNN---QLTSLPMLPSGL--QELSVSDNQ------LASLPT 198
Query: 63 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYL 122
+L L+ +LT + P+ S LKEL VS L L L + L+ L
Sbjct: 199 LPSELYKLWAYNN-RLTSL-----PALPSGLKELIVSGNR------LTSLPVLPSELKEL 246
Query: 123 SVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARS---CTRLRALDI 176
VS L + L L+ V + +T L S + +++
Sbjct: 247 M------VSGNRLTSLPMLPSGLLSLS------VYRNQLTRLPESLIHLSSETTVNL 291
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 47.3 bits (113), Expect = 7e-06
Identities = 37/341 (10%), Positives = 92/341 (26%), Gaps = 80/341 (23%)
Query: 16 LQFLDLTDCSCIQ-----ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI------VSNC 64
L +++ +C + + L +Q +++ + + L
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPE------MQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 65 PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSV 124
++ +Y+ L ++ +L L Q+ L L L++
Sbjct: 305 EKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-QLEGK-LPAFGSEIK-LASLNL 360
Query: 125 AKC--DQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVL-----ARSCTRLRALDI- 176
A ++ ++ L+ + + + A+S + + A+D
Sbjct: 361 AYNQITEIPAN----FCGFTEQVENLSFAHNK------LKYIPNIFDAKSVSVMSAIDFS 410
Query: 177 -----GKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQ-CIAYYCRGLQQLNIQDC 230
+ L N+ ++L + + L +N+
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI---SKFPKELFSTGSPLSSINLMGN 467
Query: 231 QISVEGYRAVKKYCKRCCIQISCLTASPTQLL----LQFLDLTDC--SNVDDQGLSLIVS 284
++ I + L L +DL + + D +
Sbjct: 468 MLTE--------------IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD---DFRAT 510
Query: 285 NCPQLIYLYLRRCVKLTDIGIKYVPSF---CSQLKELSVSD 322
P L+ + L + P+ S LK + +
Sbjct: 511 TLPYLVGIDLSYN-SFSKF-----PTQPLNSSTLKGFGIRN 545
Score = 42.7 bits (101), Expect = 2e-04
Identities = 47/459 (10%), Positives = 116/459 (25%), Gaps = 106/459 (23%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 75
L+ + + A + + + L N L + + C
Sbjct: 208 LRQFYMGNSP------FVAENICEAWENENSEYAQQY--KTEDLKWDNLKDLTDVEVYNC 259
Query: 76 VKLTDIGIKYVPSF---CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSD 132
LT + P+F +++ ++V+ + +L L
Sbjct: 260 PNLTKL-----PTFLKALPEMQLINVACNRGI---SGEQLKDDWQALADAP--------- 302
Query: 133 AGLKVIARRCYKLRYLNARGCEAVSDDAITVLA-----RSCTRLRALDIGKCDVSDAGLR 187
K++ + + + +L L+ + L
Sbjct: 303 --------VGEKIQIIYIGYNN------LKTFPVETSLQKMKKLGMLECLYNQLEG-KLP 347
Query: 188 ALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV--EGYRAVKKYCK 245
A S + L+L + + ++ L+ ++
Sbjct: 348 AFG-SEIKLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNKLKYIPNI--------- 395
Query: 246 RCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGI 305
++ + + + ++ + L + + L +++
Sbjct: 396 ---FDAKSVS-VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF-P 449
Query: 306 KYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCY 365
K + S S L +++ +T+ L +
Sbjct: 450 KELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTY-------------------- 488
Query: 366 KLRYLNARGCEAVSDDAITVL-----ARSCTRLRALDIGKCDVSDAGLRALAESCPNIKK 420
L ++ + + +T L A + L +D+ S + +K
Sbjct: 489 LLTSID------LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS--KFPTQPLNSSTLKG 540
Query: 421 LSLRQC-DLVTDRGVQCIA---YYCRGLQQLNIQDCQIS 455
+R D +R ++ C L QL I I
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
Score = 34.2 bits (79), Expect = 0.093
Identities = 35/308 (11%), Positives = 82/308 (26%), Gaps = 81/308 (26%)
Query: 7 LTASPTQLL-----LQFLDLTDC------SCIQISCLTASPTQLLLQFLDLTDCSNVDDQ 55
+T P ++ L + ++ + + + ++ +
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS-VMSAIDFSYNEIGSVDGKNFD 423
Query: 56 GLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKL 115
L + + L +++ K + S S L +++ +T+ L
Sbjct: 424 PLDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGN-MLTEIPKNSLKDE 480
Query: 116 GATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVL-----ARSCTR 170
+ L ++ + + +T L A +
Sbjct: 481 NENFKNTY--------------------LLTSID------LRFNKLTKLSDDFRATTLPY 514
Query: 171 LRALDIGKCDVSDAGLRALAESCPNIKKLSLRQC-DLVTDRGVQCIA---YYCRGLQQLN 226
L +D+ S + +K +R D +R ++ C L QL
Sbjct: 515 LVGIDLSYNSFS--KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572
Query: 227 IQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLL--LQFLDLTDCSNVDDQGLSLIVS 284
I I ++ ++ + LD+ D N +S+ +S
Sbjct: 573 IGSNDIR----------------KV------NEKITPNISVLDIKDNPN-----ISIDLS 605
Query: 285 NCPQLIYL 292
I
Sbjct: 606 YVCPYIEA 613
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 46.9 bits (112), Expect = 1e-05
Identities = 65/478 (13%), Positives = 134/478 (28%), Gaps = 91/478 (19%)
Query: 23 DCSCIQIS--C----LTASPTQLL--LQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLYL 72
I+ C L+ P + + +DL+ + S N +L +L L
Sbjct: 8 IEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS----NFSELQWLDL 63
Query: 73 RRCVKLTDIG-------------------IKYVP----SFCSQLKELSVSDC--TQVTDF 107
RC ++ I I+ S + L+ L + + F
Sbjct: 64 SRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122
Query: 108 GLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGC--EAVSDDAITVLA 165
+ +L L+ L+VA + L L +++ + ++ + + L
Sbjct: 123 PIGQLIT----LKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 166 RSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQL 225
+ +LD+ + +A + +L+LR ++ C + L L
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTC----LQNLAGL 231
Query: 226 NIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLL--LQFLDLTDCSNVDDQGLSLIV 283
++ + + + S + L + + + +D ++
Sbjct: 232 HVHRLILGE----------FKDERNLEIFEPSIMEGLCDVTIDEF-RLTYTNDFSDDIVK 280
Query: 284 -SNCPQLIYLYLRRCVKLTDIGIKYVPS--FCSQLKELSVSDC--TQVTDFGLYELAKLG 338
+ + L IKY+ + + LS+ C Q L L L
Sbjct: 281 FHCLANVSAMSLAGV------SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL- 333
Query: 339 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDI 398
L++ K L YL+ + LR LD+
Sbjct: 334 ----TLTMNKGSISFKKVA------LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 399 GKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV 456
+ A ++ L + L L L+I +
Sbjct: 384 SFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKI 438
Score = 40.4 bits (95), Expect = 0.001
Identities = 67/492 (13%), Positives = 132/492 (26%), Gaps = 89/492 (18%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL-----LQFLDLTDC--SNVDDQGLSLIVSNCPQLI 68
L L LT + + L+ L + ++++ + L
Sbjct: 82 LSNLILTGNP------IQSFSPGSFSGLTSLENLVAVETKLASLESFPIG----QLITLK 131
Query: 69 YLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC--TQVTDFGLYELAKLGATLRYLSVAK 126
L + + + S + L + +S +T L L + L ++
Sbjct: 132 KLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 127 CDQVSDAGLKVIARRC---YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 183
+ I + KL L RG S + + ++ L + + D
Sbjct: 191 NP------IDFIQDQAFQGIKLHELTLRGNF-NSSNIMKTCLQNLAGLHVHRLILGEFKD 243
Query: 184 -AGLRALAES-CPNIKKLSLRQCDL--VTDRGVQCIA-YYCRGLQQLNIQDCQISVEGYR 238
L S + +++ + L D + + + +++ I
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303
Query: 239 AVKKYCKRCCIQISCLTASPTQLL------------------------LQFLDLTDCSNV 274
+ I L PT L L +LDL+ +
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363
Query: 275 DDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC--TQVTDFGLY 332
S L +L L + +L+ L +VT+F
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFN-GAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSA- 419
Query: 333 ELAKLGATLRYLSVAKCDQVSDAGLKVIARR----CYKLRYLNARGCEAVSDDAITVLAR 388
L L YL ++ + K+ L L G + V
Sbjct: 420 -FLSL-EKLLYLDISYTN------TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF-A 470
Query: 389 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYY----CRGL 444
+ T L LD+ KC + + ++ L++ +L + L
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNL------LFLDSSHYNQLYSL 523
Query: 445 QQLNIQDCQISV 456
L+ +I
Sbjct: 524 STLDCSFNRIET 535
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 41.1 bits (96), Expect = 6e-04
Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 286 CPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLS 345
PQ+ L + + L + P + L+ L D L L +L A+L++L
Sbjct: 79 PPQITVLEITQN-ALISL-----PELPASLEYLDACDN------RLSTLPELPASLKHL- 125
Query: 346 VAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 405
V + L ++ L Y+N ++ +T+L T L L V +
Sbjct: 126 -----DVDNNQLTMLPELPALLEYIN------ADNNQLTMLPELPTSLEVL-----SVRN 169
Query: 406 AGLRALAESCPNIKKLSLRQCDLVT 430
L L E +++ L + L +
Sbjct: 170 NQLTFLPELPESLEALDVSTNLLES 194
Score = 34.6 bits (79), Expect = 0.083
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 3 QISCLTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVS 62
+ L P L ++LD D ++S L P L + LD+ + L+++
Sbjct: 91 ALISLPELPASL--EYLDACDN---RLSTLPELPASL--KHLDVDNNQ------LTMLPE 137
Query: 63 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYL 122
L Y+ +LT + P + L+ LSV + L L +L +L L
Sbjct: 138 LPALLEYINADNN-QLTML-----PELPTSLEVLSVRNN------QLTFLPELPESLEAL 185
Query: 123 SV 124
V
Sbjct: 186 DV 187
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 39.8 bits (93), Expect = 7e-04
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 158 DDAITVLARSCTRLRALDIGKC-DVSDAGLRALAES-CPN--IKKLSLRQCDLVTDRGVQ 213
+ I L T L+ ++I VS +R+L E+ C + I+K SL + +D +
Sbjct: 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI-SDSEAR 88
Query: 214 CIAYYCR---GLQQLNIQDCQISVEGYRA 239
+ L+ LN++ ++ E
Sbjct: 89 GLIELIETSPSLRVLNVESNFLTPELLAR 117
Score = 39.8 bits (93), Expect = 7e-04
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 380 DDAITVLARSCTRLRALDIGKC-DVSDAGLRALAES-CPN--IKKLSLRQCDLVTDRGVQ 435
+ I L T L+ ++I VS +R+L E+ C + I+K SL + +D +
Sbjct: 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI-SDSEAR 88
Query: 436 CIAYYCR---GLQQLNIQDCQISVEGYRA 461
+ L+ LN++ ++ E
Sbjct: 89 GLIELIETSPSLRVLNVESNFLTPELLAR 117
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/130 (10%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 117 ATLRYLSVAKCDQVSDAGLKVIARRCYK---LRYLNARGCEAVSDDAITV---LARSCTR 170
L+ +++ +VS ++ + + + +A + + S +
Sbjct: 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS- 99
Query: 171 LRALDIGKCDVSDAGLRALAESCP-----NIKKLSLRQCDLVTDRGVQCIAY---YCRGL 222
LR L++ ++ L L S K ++ ++ ++ + L
Sbjct: 100 LRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL 159
Query: 223 QQLNIQDCQI 232
++ I +
Sbjct: 160 LRVGISFASM 169
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/130 (10%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 339 ATLRYLSVAKCDQVSDAGLKVIARRCYK---LRYLNARGCEAVSDDAITV---LARSCTR 392
L+ +++ +VS ++ + + + +A + + S +
Sbjct: 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS- 99
Query: 393 LRALDIGKCDVSDAGLRALAESCP-----NIKKLSLRQCDLVTDRGVQCIAY---YCRGL 444
LR L++ ++ L L S K ++ ++ ++ + L
Sbjct: 100 LRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL 159
Query: 445 QQLNIQDCQI 454
++ I +
Sbjct: 160 LRVGISFASM 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 0.001
Identities = 49/363 (13%), Positives = 94/363 (25%), Gaps = 122/363 (33%)
Query: 162 TVLA----RSCTRLRA-------LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTD- 209
T +A S L++ C+ + L L + I + D ++
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 210 -----------RGVQCIAYYCRGLQQL-NIQD----------CQI-------SVEGYRAV 240
R + Y L L N+Q+ C+I V + +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 241 KKYCKRCCIQISC-LTASPT-QLLLQFLDLTDCSNVDDQGL-SLIVSNCPQLIYLYLRRC 297
S LT LLL++L + Q L +++ P+ + +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYL------DCRPQDLPREVLTTNPRRLSI----- 332
Query: 298 VKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGL 357
I S+ D D ++++ K + ++ L
Sbjct: 333 -----IA-------------ESIRDGLATWDN-----------WKHVNCDKLTTIIESSL 363
Query: 358 KVIA----RRCYKLRYLNARGCEAV-SDDA-ITVLARSCTRLRALDIGKCDVSDAGLRAL 411
V+ R+ + L +V A I L + DV + + +
Sbjct: 364 NVLEPAEYRKMFD--RL------SVFPPSAHIP--------TILLSLIWFDVIKSDVMVV 407
Query: 412 AESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDC-------QISVEGYRAVKK 464
K SL + + + V+ Y K
Sbjct: 408 VNKL---HKYSLVEKQPKEST------ISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 465 YCK 467
+
Sbjct: 459 FDS 461
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 40.7 bits (96), Expect = 0.001
Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 51/182 (28%)
Query: 167 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYY--CRGLQQ 224
SC+ L+ L++ + G + +++ L L + + V C L+
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGWVLSDGCGELKH 182
Query: 225 LNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLS-LI- 282
L I +IS + + +S L+FLD++ + S I
Sbjct: 183 LAISGNKISGD-------------VDVSRCVN------LEFLDVSSNN------FSTGIP 217
Query: 283 -VSNCPQLIYLYL-------------RRCVKLTDIGIKY------VPSF-CSQLKELSVS 321
+ +C L +L + C +L + I +P L+ LS++
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 322 DC 323
+
Sbjct: 278 EN 279
Score = 33.7 bits (78), Expect = 0.15
Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 44/233 (18%)
Query: 16 LQFLDLTDCSC---IQISCLTASPTQLLLQFLDLTDCSNVDDQGLS-------LIVSNCP 65
L+FL+++ + ++S + L+ LDL+ S +S ++ C
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNS---LEVLDLSANS------ISGANVVGWVLSDGCG 178
Query: 66 QLIYLYLRRCVKLT-DIGIKYVPSFCSQLKELSVSDCTQVTDF--GLYELAKLGATLRYL 122
+L +L + K++ D+ + S C L+ L VS +F G+ L + L++L
Sbjct: 179 ELKHLAISGN-KISGDVDV----SRCVNLEFLDVSSN----NFSTGIPFLGDC-SALQHL 228
Query: 123 SVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVS 182
++ ++S + I+ C +L+ LN + V + L+ L + + +
Sbjct: 229 DISGN-KLSGDFSRAIS-TCTELKLLNISSNQFVG----PIPPLPLKSLQYLSLAENKFT 282
Query: 183 DAGLRALAESCPNIKKLSLRQCDLVTDRGV--QCIAYYCRGLQQLNIQDCQIS 233
L+ +C + L L G C L+ L + S
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFY---GAVPPFFG-SCSLLESLALSSNNFS 331
Score = 33.0 bits (76), Expect = 0.23
Identities = 57/321 (17%), Positives = 92/321 (28%), Gaps = 88/321 (27%)
Query: 44 LDLTDCSNVDDQG-LSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSD 100
+DL+ +S + + L L+L + V F + L L +S
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HINGS----VSGFKCSASLTSLDLSR 109
Query: 101 CTQVTDFG-----LYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA 155
L L + L++L+V+ + G + L L+
Sbjct: 110 N----SLSGPVTTLTSLGSC-SGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 156 VSDDAITV-LARSCTRLRALDIGKCDVSDA----GLRALAE----------------SCP 194
+ + L+ C L+ L I +S L C
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCS 223
Query: 195 NIKKLSLRQCDLVTDRGV--QCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQIS 252
++ L + L G + I+ C L+ LNI Q G I
Sbjct: 224 ALQHLDISGNKLS---GDFSRAIST-CTELKLLNISSNQFV--G-------------PI- 263
Query: 253 CLTASPTQLL--LQFLDLTDCSNVDDQGLS-----LIVSNCPQLIYLYLRRCVKLTDIGI 305
P L LQ+L L + + + C L L L
Sbjct: 264 -----PPLPLKSLQYLSLAENK------FTGEIPDFLSGACDTLTGLDLSGN-HFYGA-- 309
Query: 306 KYVPSF---CSQLKELSVSDC 323
VP F CS L+ L++S
Sbjct: 310 --VPPFFGSCSLLESLALSSN 328
Score = 31.8 bits (73), Expect = 0.58
Identities = 57/326 (17%), Positives = 105/326 (32%), Gaps = 71/326 (21%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL----LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLY 71
L+ L L++ + S + L LDL+ S + +C L +L
Sbjct: 79 LESLFLSNSH------INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132
Query: 72 LRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGA--TLRYLSVAKCD- 128
+ L G + L+ L +S ++ + L++L+++
Sbjct: 133 VSSN-TLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKI 190
Query: 129 --QVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGL 186
V + L +L+ + I L C+ L+ LDI +S
Sbjct: 191 SGDVDVSRCV-------NLEFLDVSSNNFSTG--IPFLG-DCSALQHLDISGNKLSGDFS 240
Query: 187 RALAESCPNIKKLSLRQCDLVTDRGVQCI-AYYCRGLQQLNIQDCQISVEGYRAVKKYCK 245
RA++ +C +K L++ V G I + LQ L++ + + + G
Sbjct: 241 RAIS-TCTELKLLNISSNQFV---GP--IPPLPLKSLQYLSLAENKFT--G--------- 283
Query: 246 RCCIQI-SCLTASPTQLLLQFLDLTDCSNVDDQGLS----LIVSNCPQLIYLYLRRCVKL 300
+I L+ + L LDL+ +C L L L
Sbjct: 284 ----EIPDFLSGACDT--LTGLDLSGNH------FYGAVPPFFGSCSLLESLALSSN-NF 330
Query: 301 TDIGIKYVP----SFCSQLKELSVSD 322
+ +P LK L +S
Sbjct: 331 SGE----LPMDTLLKMRGLKVLDLSF 352
Score = 30.3 bits (69), Expect = 1.8
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 389 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYY--CRGLQQ 446
SC+ L+ L++ + G + +++ L L + + V C L+
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGWVLSDGCGELKH 182
Query: 447 LNIQDCQIS 455
L I +IS
Sbjct: 183 LAISGNKIS 191
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 39.7 bits (93), Expect = 0.002
Identities = 79/502 (15%), Positives = 152/502 (30%), Gaps = 90/502 (17%)
Query: 7 LTASPTQL--LLQFLDLTDCSCIQISCLTASPTQLL--LQFLDLTDC--SNVDDQGLSLI 60
P L + LDL+ + L + LQ LDL+ C ++D
Sbjct: 19 FYKIPDNLPFSTKNLDLSFN---PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-- 73
Query: 61 VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLR 120
+ L L L + + S S L++L + + + + L TL+
Sbjct: 74 --SLSHLSTLILTGN-PIQSL-ALGAFSGLSSLQKLVAVET-NLASLENFPIGHL-KTLK 127
Query: 121 YLSVAKCDQVSDAGLKVIARRCYKLRYLNARGC--EAVSDDAITVLARSCTRLRALDIGK 178
L+VA + L L +L+ +++ + VL + +LD+
Sbjct: 128 ELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 179 CDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYR 238
++ A E + KL+LR + + +GL L + +
Sbjct: 187 NPMNFIQPGAFKE--IRLHKLTLRNNFD----SLNVMKTCIQGLAGLEVHRLVLGEF--- 237
Query: 239 AVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIY-LYLRRC 297
R + S L+ L L + + L L
Sbjct: 238 -------RNEGNLEKFDKS----ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 298 VKLTDIGIKYVP--SFCSQLKELSVSDC--TQVTDFGLYELAKLG--------------- 338
L + I+ V S+ + L + +C Q L L +L
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346
Query: 339 ATLRYLSVAKCDQVSDAGLKVIA-RRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALD 397
+L +L +++ +S G + L+YL+ ++ ++ +L LD
Sbjct: 347 PSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLD 402
Query: 398 IGKCDVSD-------AGLRALAE-----------------SCPNIKKLSLRQCDLVTDRG 433
++ LR L +++ L + +
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-QENF 461
Query: 434 VQCIAYYCRGLQQLNIQDCQIS 455
+ I R L L++ CQ+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLE 483
Score = 33.9 bits (78), Expect = 0.13
Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 31/240 (12%)
Query: 2 IQISCLTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIV 61
+ L + + I + Q L+L +C L L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL-- 324
Query: 62 SNCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDFGLYELAKLGAT- 118
L L T S L+ L +S ++ G + G T
Sbjct: 325 ---KSLKRLT------FTSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTS 374
Query: 119 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSC-----TRLRA 173
L+YL ++ ++ + +L +L+ + ++ L
Sbjct: 375 LKYLDLSFNGVIT---MSSNFLGLEQLEHLD------FQHSNLKQMSEFSVFLSLRNLIY 425
Query: 174 LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 233
LDI A +++ L + + + I R L L++ CQ+
Sbjct: 426 LDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLE 483
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 38.1 bits (89), Expect = 0.004
Identities = 35/251 (13%), Positives = 87/251 (34%), Gaps = 51/251 (20%)
Query: 90 CSQLKELSVSDCTQVTDF-GLYELAKLGATLRYLSVAKCDQVSDAGLKVIA--RRCYKLR 146
+ + ++ VTD EL+ + + + ++ ++ +A + L+
Sbjct: 18 LANAVKQNLGK-QSVTDLVSQKELSGV----QNFNG------DNSNIQSLAGMQFFTNLK 66
Query: 147 YLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL 206
L+ + +SD ++ L T+L L + + + + L + + +L L +L
Sbjct: 67 ELHLSHNQ-ISD--LSPLK-DLTKLEELSVNRNRLKN--LNGI--PSACLSRLFLDNNEL 118
Query: 207 VTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFL 266
+ + + L+ L+I++ ++ I L L+ L
Sbjct: 119 RDTDSLI----HLKNLEILSIRNNKLK----------------SIVMLGFLSK---LEVL 155
Query: 267 DLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQV 326
DL + GL + ++ ++ L K + +KY P + D +
Sbjct: 156 DLHGNEITNTGGL----TRLKKVNWIDLTGQ-KCVNEPVKYQPEL-YITNTVKDPDGRWI 209
Query: 327 TDFGLYELAKL 337
+ + +
Sbjct: 210 SPYYISNGGSY 220
Score = 32.7 bits (75), Expect = 0.18
Identities = 21/147 (14%), Positives = 59/147 (40%), Gaps = 26/147 (17%)
Query: 312 CSQLKELSVSDCTQVTDF-GLYELAKLGATLRYLSVAKCDQVSDAGLKVIA--RRCYKLR 368
+ + ++ VTD EL+ + + + ++ ++ +A + L+
Sbjct: 18 LANAVKQNLGK-QSVTDLVSQKELSGV----QNFNG------DNSNIQSLAGMQFFTNLK 66
Query: 369 YLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL 428
L+ + +SD ++ L T+L L + + + + L + + +L L +L
Sbjct: 67 ELHLSHNQ-ISD--LSPLK-DLTKLEELSVNRNRLKN--LNGI--PSACLSRLFLDNNEL 118
Query: 429 VTDRGVQCIAYYCRGLQQLNIQDCQIS 455
+ + + L+ L+I++ ++
Sbjct: 119 RDTDSLI----HLKNLEILSIRNNKLK 141
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 38.7 bits (90), Expect = 0.004
Identities = 38/350 (10%), Positives = 100/350 (28%), Gaps = 59/350 (16%)
Query: 3 QISCLTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDC--SNVDDQGLSLI 60
+ L P+ ++ L + IS ++ S Q + + L + + + D
Sbjct: 91 YVQELLVGPS---IETLHA---ANNNISRVSCSRGQGK-KNIYLANNKITMLRDLDEG-- 141
Query: 61 VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLR 120
++ YL L+ ++ + + + L+ L++ + D + L+
Sbjct: 142 --CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYD--VKGQVVFA-KLK 194
Query: 121 YLSVAKCDQVSDAGLKVIAR---RCYKLRYLNARGCEAVSDDAITVLARS---CTRLRAL 174
L + S L + + +++ + ++ + ++ ++ L
Sbjct: 195 TLDL------SSNKLAFMGPEFQSAAGVTWIS------LRNNKLVLIEKALRFSQNLEHF 242
Query: 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV 234
D+ LR ++ ++ + +T + + C +
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE----ECTVPTLGHYGAYCCED 298
Query: 235 EGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYL 294
+ R L + L + + L N + +
Sbjct: 299 LP----APFADRL-----------IALKRKEHALLSGQGSETERLECERENQARQREIDA 343
Query: 295 RRCVKLTDIGIKYVPSFCSQLKELSVSD--CTQVTDFGLYELAKLGATLR 342
+ + + I V L + G A+L TL+
Sbjct: 344 LKE-QYRTV-IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391
Score = 33.3 bits (76), Expect = 0.19
Identities = 26/243 (10%), Positives = 73/243 (30%), Gaps = 72/243 (29%)
Query: 220 RGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC--SNVDDQ 277
+G + + + + +I++ C + +Q+LDL V+
Sbjct: 120 QGKKNIYLANNKITMLRDLD-----------EGCRSR------VQYLDLKLNEIDTVNFA 162
Query: 278 GLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS--FCSQLKELSVSDCTQVTDFGLYELA 335
L ++ L +L L+ + D+ ++LK L +S +LA
Sbjct: 163 EL---AASSDTLEHLNLQYN-FIYDV-----KGQVVFAKLKTLDLSSN---------KLA 204
Query: 336 KLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARS---CTR 392
+G + + + +++ + ++ + ++ ++
Sbjct: 205 FMGPEFQSAA--------------------GVTWIS------LRNNKLVLIEKALRFSQN 238
Query: 393 LRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDC 452
L D+ LR ++ ++ + +T + + C +
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE----ECTVPTLGHYGAY 294
Query: 453 QIS 455
Sbjct: 295 CCE 297
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 35.0 bits (81), Expect = 0.017
Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 21/140 (15%)
Query: 166 RSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQL 225
R+ + ++ L + ++ L L + ++ LS L + + L++L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKL 69
Query: 226 NIQDCQISVEGYRAVKKYCKRCCI------------QISCLTASPTQLLLQFLDLTDCSN 273
+ D ++S G + + C I L L+ LDL +C
Sbjct: 70 ELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN---LKSLDLFNCEV 125
Query: 274 VDDQG-LSLIVSNCPQLIYL 292
+ + PQL YL
Sbjct: 126 TNLNDYRENVFKLLPQLTYL 145
Score = 33.1 bits (76), Expect = 0.084
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 363 RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLS 422
+L +L+ S I L + +L+ L++ VS GL LAE CPN+ L+
Sbjct: 40 EFEELEFLSTINVGLTS---IANLPK-LNKLKKLELSDNRVSG-GLEVLAEKCPNLTHLN 94
Query: 423 LRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS-VEGYR 460
L + ++ + L+ L++ +C+++ + YR
Sbjct: 95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYR 132
Score = 31.2 bits (71), Expect = 0.36
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 28/157 (17%)
Query: 191 ESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI-SVEGYRAVKKYCKRCCI 249
+ ++K+L L + L+ L+ + + S+
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSIAN------------- 59
Query: 250 QISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVP 309
+ L L+ L+L+D N GL ++ CP L +L L K+ D+
Sbjct: 60 -LPKLNK------LKKLELSD--NRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPL 109
Query: 310 SFCSQLKELSVSD--CTQVTDFGLYELAKLGATLRYL 344
LK L + + T + D+ L L YL
Sbjct: 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLL-PQLTYL 145
Score = 30.0 bits (68), Expect = 0.94
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 388 RSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQL 447
R+ + ++ L + ++ L L + ++ LS L + + L++L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKL 69
Query: 448 NIQDCQIS 455
+ D ++S
Sbjct: 70 ELSDNRVS 77
Score = 28.9 bits (65), Expect = 1.9
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 19 LDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKL 78
L L + + + L+FL + L +L L L ++
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL----PKLNKLKKLELSDN-RV 76
Query: 79 TDIGIKYVPSFCSQLKELSVSDCTQVTDFG-LYELAKLGATLRYLSVAKC 127
+ + + C L L++S ++ D + L KL L+ L + C
Sbjct: 77 SGGL-EVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL-ENLKSLDLFNC 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 33.9 bits (78), Expect = 0.046
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 75
L+FL L + + ++ P L+ L+L++ N GL ++ P L +L L
Sbjct: 51 LEFLSLINV---GLISVSNLPKLPKLKKLELSE--NRIFGGLDMLAEKLPNLTHLNLSGN 105
Query: 76 VKLTDIGIKYVPSFCSQLKELSVSD--CTQVTDFGLYELAKLGATLRYL 122
KL DI LK L + + T + D+ L L YL
Sbjct: 106 -KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-PQLTYL 152
Score = 33.2 bits (76), Expect = 0.083
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 21/140 (15%)
Query: 166 RSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQL 225
R+ +R L + C +D + L N++ LSL L++ + L++L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKL 76
Query: 226 NIQDCQISVEGYRAVKKYCKRCCI------------QISCLTASPTQLLLQFLDLTDCSN 273
+ + +I G + + + L L+ LDL +C
Sbjct: 77 ELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC---LKSLDLFNCEV 132
Query: 274 VDDQGLSLIV-SNCPQLIYL 292
+ V PQL YL
Sbjct: 133 TNLNDYRESVFKLLPQLTYL 152
Score = 32.0 bits (73), Expect = 0.22
Identities = 19/102 (18%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 363 RCYKLRYLNARGCEAVSDDAITVLA--RSCTRLRALDIGKCDVSDAGLRALAESCPNIKK 420
L +L+ + + + ++ +L+ L++ + + GL LAE PN+
Sbjct: 47 EFVNLEFLS------LINVGLISVSNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTH 99
Query: 421 LSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS-VEGYRA 461
L+L L ++ + L+ L++ +C+++ + YR
Sbjct: 100 LNLSGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRE 140
Score = 28.6 bits (64), Expect = 3.3
Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 14/134 (10%)
Query: 18 FLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVK 77
LD + +I LTA L +FL L + + L P+L L L +
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNL--EFLSLINVGLISVSNL----PKLPKLKKLELSEN-R 82
Query: 78 LTDIGIKYVPSFCSQLKELSVSDCTQVTDFG-LYELAKLGATLRYLSVAKCDQVSDAG-- 134
+ L L++S ++ D L L KL L+ L + C+ +
Sbjct: 83 IFGGLDMLAEK-LPNLTHLNLSGN-KLKDISTLEPLKKL-ECLKSLDLFNCEVTNLNDYR 139
Query: 135 LKVIARRCYKLRYL 148
V +L YL
Sbjct: 140 ESVFK-LLPQLTYL 152
Score = 28.2 bits (63), Expect = 4.1
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 388 RSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQL 447
R+ +R L + C +D + L N++ LSL L++ + L++L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKL 76
Query: 448 NIQDCQIS 455
+ + +I
Sbjct: 77 ELSENRIF 84
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 34.6 bits (79), Expect = 0.058
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 17 QFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCV 76
Q LDL L + P + + + + L +I N P+L+ L L
Sbjct: 130 QALDL--------KGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN- 180
Query: 77 KLTDI-GIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT-LRYLSVAK---CDQVS 131
+L + + + LK L++S ++ EL K+ L L + CD
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER--ELDKIKGLKLEELWLDGNSLCDTFR 237
Query: 132 DAG--LKVIARRCYKLRYLN 149
D + I R KL L+
Sbjct: 238 DQSTYISAIRERFPKLLRLD 257
Score = 33.8 bits (77), Expect = 0.094
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 11/131 (8%)
Query: 248 CIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI-GIK 306
+ + L + P + + + + L +I N P+L+ L L +L + +
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMS 189
Query: 307 YVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT-LRYLSVAK---CDQVSDAG--LKVI 360
+ LK L++S ++ EL K+ L L + CD D + I
Sbjct: 190 SIVQKAPNLKILNLSGN-ELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246
Query: 361 ARRCYKLRYLN 371
R KL L+
Sbjct: 247 RERFPKLLRLD 257
Score = 29.6 bits (66), Expect = 2.0
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 22/114 (19%)
Query: 184 AGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKY 243
A LR + E+ P + L+L L + I L+ LN+ ++ E
Sbjct: 160 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER------- 212
Query: 244 CKRCCIQISCLTASPTQLLLQFLDLTD---CSNVDDQG--LSLIVSNCPQLIYL 292
++ + L L+ L L C DQ +S I P+L+ L
Sbjct: 213 ------ELDKI----KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256
Score = 28.0 bits (62), Expect = 5.7
Identities = 14/97 (14%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 382 AITVLARSCTRLRALDIGKCDVSD-AGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYY 440
+ ++ + L +L++ + + ++ + PN+K L+L +L ++R + I
Sbjct: 161 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-- 218
Query: 441 CRGLQQLNIQDCQI-----SVEGYR-AVKKYCKRCII 471
L++L + + Y A+++ + +
Sbjct: 219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLR 255
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 34.1 bits (78), Expect = 0.086
Identities = 37/227 (16%), Positives = 78/227 (34%), Gaps = 15/227 (6%)
Query: 12 TQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLY 71
+L ++ + + LQ L L + L+ + P L L
Sbjct: 71 KRLTVRAARIPSRILFGALRVLGISG---LQELTLENLEVTGTAPPPLLEATGPDLNILN 127
Query: 72 LRRCVKLT-DIGIKYVPSFCSQ-LKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQ 129
LR T D + + + LK LS++ +F ++ L L ++ +
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVF-PALSTLDLSDNPE 185
Query: 130 VSDAGLK--VIARRCYKLRYLNARGCEAVS-DDAITVLARSCTRLRALDIGKCDVSDAGL 186
+ + GL + + L+ L R + + LA + +L+ LD+ + DA
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 187 RALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 233
+ + L+L L + + + L L++ ++
Sbjct: 246 APSCDWPSQLNSLNLSFTGL--KQVPKGLP---AKLSVLDLSYNRLD 287
Score = 32.9 bits (75), Expect = 0.17
Identities = 41/239 (17%), Positives = 83/239 (34%), Gaps = 26/239 (10%)
Query: 222 LQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSL 281
L++L ++ +I + L S LQ L L + L
Sbjct: 70 LKRLTVRAARIPSRILFGA----------LRVLGISG----LQELTLENLEVTGTAPPPL 115
Query: 282 IVSNCPQLIYLYLRRCVKLT-DIGIKYVPSFCSQ-LKELSVSDCTQVTDFGLYELAKLGA 339
+ + P L L LR T D + + + LK LS++ +F ++
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVF-P 173
Query: 340 TLRYLSVAKCDQVSDAGLK--VIARRCYKLRYLNARGCEAVS-DDAITVLARSCTRLRAL 396
L L ++ ++ + GL + + L+ L R + + LA + +L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
Query: 397 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
D+ + DA + + L+L L + + + L L++ ++
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--KQVPKGLP---AKLSVLDLSYNRLD 287
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 31.9 bits (73), Expect = 0.38
Identities = 24/209 (11%), Positives = 70/209 (33%), Gaps = 36/209 (17%)
Query: 3 QISCLTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDC--SNVDDQGLSLI 60
+ L P+ ++ L + IS ++ S Q + + L + + + D
Sbjct: 91 YVQELLVGPS---IETLHAANN---NISRVSCSRGQGK-KNIYLANNKITMLRDLDEG-- 141
Query: 61 VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLR 120
++ YL L+ ++ + + + L+ L++ + D + A L+
Sbjct: 142 --CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYD--VKGQVVF-AKLK 194
Query: 121 YLSVAKCDQVSDAGLKVIAR---RCYKLRYLNARGCEAVSDDAITVLARS---CTRLRAL 174
L +S L + + +++ + ++ + ++ ++ L
Sbjct: 195 TLD------LSSNKLAFMGPEFQSAAGVTWIS------LRNNKLVLIEKALRFSQNLEHF 242
Query: 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQ 203
D+ LR ++ ++ +
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Score = 30.7 bits (70), Expect = 1.1
Identities = 24/216 (11%), Positives = 69/216 (31%), Gaps = 74/216 (34%)
Query: 220 RGLQQLNIQDCQISVEGYRAVKKYCKRCCIQ---ISCLTASPTQLLLQFLDLTDC--SNV 274
+G + + + + +I++ ++ C + +Q+LDL V
Sbjct: 120 QGKKNIYLANNKITM--------------LRDLDEGCRSR------VQYLDLKLNEIDTV 159
Query: 275 DDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS--FCSQLKELSVSDCTQVTDFGLY 332
+ L ++ L +L L+ + D+ ++LK L +S
Sbjct: 160 NFAEL---AASSDTLEHLNLQYN-FIYDV-----KGQVVFAKLKTLDLSSN--------- 201
Query: 333 ELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARS--- 389
+LA +G + + + +++ + ++ + ++ ++
Sbjct: 202 KLAFMGPEFQSAA--------------------GVTWIS------LRNNKLVLIEKALRF 235
Query: 390 CTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQ 425
L D+ LR ++ ++ +
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Score = 27.6 bits (62), Expect = 7.9
Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 42/216 (19%)
Query: 250 QISCLTASPTQLL--LQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGI 305
+ AS Q ++ LDL+ S + L+ +L L L L +
Sbjct: 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLA----PFTKLELLNLSSN-VLYET-- 73
Query: 306 KYVPSFC--SQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVI-AR 362
S L+ L +++ V + + G ++ L ++ + +
Sbjct: 74 ---LDLESLSTLRTLDLNNN-YVQELLV------GPSIETLHA------ANNNISRVSCS 117
Query: 363 RCYKLRYLNARGC--EAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKK 420
R + + + D +R++ LD+ ++ LA S ++
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCR----SRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 421 LSLRQCDLVT-DRGVQCIAYYCRGLQQLNIQDCQIS 455
L+L+ + V L+ L++ +++
Sbjct: 174 LNLQYNFIYDVKGQVV-----FAKLKTLDLSSNKLA 204
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 29.6 bits (67), Expect = 1.3
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 26/119 (21%)
Query: 142 CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD----AGLRAL-------- 189
+ R L+ RG + I L + + A+D ++ LR L
Sbjct: 18 AVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74
Query: 190 ---------AESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS-VEGYR 238
++ P++ +L L LV + +A + L L I ++ + YR
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYR 132
Score = 29.6 bits (67), Expect = 1.3
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 26/119 (21%)
Query: 364 CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD----AGLRAL-------- 411
+ R L+ RG + I L + + A+D ++ LR L
Sbjct: 18 AVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74
Query: 412 ---------AESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS-VEGYR 460
++ P++ +L L LV + +A + L L I ++ + YR
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYR 132
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 28.6 bits (64), Expect = 4.8
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 16 LQFLDLTDCSCIQISCLTA-SPTQLL-LQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLY 71
L L+L D ++ + + + L L+ L L + ++ + P L+ L
Sbjct: 125 LNTLELFDN---WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN----RVPSLMRLD 177
Query: 72 LRRCVKLTDIGIKYVPSF--CSQLKELSVSDC--TQVTDF-GLYELAKL 115
L KL I +F LK L++ C + + L L +L
Sbjct: 178 LGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223
Score = 27.8 bits (62), Expect = 8.5
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 263 LQFLDLTDC--SNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKEL 318
L+ L L + ++ + P L+ L L KL I +F LK L
Sbjct: 149 LRELWLRNNPIESIPSYAFN----RVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYL 201
Query: 319 SVSDC--TQVTDF-GLYELAKL 337
++ C + + L L +L
Sbjct: 202 NLGMCNIKDMPNLTPLVGLEEL 223
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 28.6 bits (65), Expect = 4.9
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 162 TVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLV 207
TVL + +LR LD + S ++ +++ DLV
Sbjct: 195 TVLDINIDKLRQLD----AEFCGRIHTRYSSAYELEGA-VKRADLV 235
Score = 28.6 bits (65), Expect = 4.9
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 384 TVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLV 429
TVL + +LR LD + S ++ +++ DLV
Sbjct: 195 TVLDINIDKLRQLD----AEFCGRIHTRYSSAYELEGA-VKRADLV 235
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 28.6 bits (65), Expect = 5.0
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 162 TVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLV 207
+ + RL L+ + + + L + I+ + + DL+
Sbjct: 194 QIFDINVERLSYLE----TLFGSRVELLYSNSAEIETA-VAEADLL 234
Score = 28.6 bits (65), Expect = 5.0
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 384 TVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLV 429
+ + RL L+ + + + L + I+ + + DL+
Sbjct: 194 QIFDINVERLSYLE----TLFGSRVELLYSNSAEIETA-VAEADLL 234
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 28.6 bits (65), Expect = 5.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 162 TVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLV 207
T+L + RL+ LD DV + L + NIKK ++ DL+
Sbjct: 193 TILDVNHKRLQYLD----DVFGGRVITLTATEANIKKS-VQHADLL 233
Score = 28.6 bits (65), Expect = 5.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 384 TVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLV 429
T+L + RL+ LD DV + L + NIKK ++ DL+
Sbjct: 193 TILDVNHKRLQYLD----DVFGGRVITLTATEANIKKS-VQHADLL 233
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 28.1 bits (63), Expect = 6.9
Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 40/241 (16%)
Query: 7 LTASPTQLL--LQFLDLTDCSCIQISCLTASPTQLL--LQFLDLTDC--SNVDDQGLSLI 60
A P + + LDL +I L L+ L+L + S V+ +
Sbjct: 23 FVAVPEGIPTETRLLDLGKN---RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-- 77
Query: 61 VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC--TQVTDFGLYELAKLGAT 118
N L L LR +L I + V + S L +L +S+ + D+ +L L
Sbjct: 78 --NLFNLRTLGLRSN-RLKLIPLG-VFTGLSNLTKLDISENKIVILLDYMFQDLYNL--- 130
Query: 119 LRYLSVAKCDQVSDAGLKVIARRC----YKLRYLNARGC--EAVSDDAITVLARSCTRLR 172
+ L +V D L I+ R L L C ++ +A++ L L
Sbjct: 131 -KSL------EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL----HGLI 179
Query: 173 ALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 232
L + +++ + + +K L + + + Y L L+I C +
Sbjct: 180 VLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDT--MTPNCLYGLNLTSLSITHCNL 236
Query: 233 S 233
+
Sbjct: 237 T 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.428
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,079,072
Number of extensions: 432061
Number of successful extensions: 2344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1268
Number of HSP's successfully gapped: 214
Length of query: 479
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 382
Effective length of database: 3,993,456
Effective search space: 1525500192
Effective search space used: 1525500192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.4 bits)