RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5339
(479 letters)
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 66.3 bits (160), Expect = 1e-12
Identities = 40/235 (17%), Positives = 78/235 (33%), Gaps = 17/235 (7%)
Query: 146 RYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD 205
+ + A C D S R++ +D+ + + L + C ++ LSL
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 206 LVTDRGVQCIAYYCRGLQQLNIQDCQ-ISVEGYRAVKKYCKRCCI-----------QISC 253
L +D V +A L +LN+ C S + + C R +
Sbjct: 83 L-SDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140
Query: 254 LTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCS 313
+ + + L+L+ + + + + +
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200
Query: 314 QLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLR 368
L+ LS+S C + L EL ++ TL+ L V V D L+++ L+
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI--VPDGTLQLLKEALPHLQ 252
Score = 52.8 bits (125), Expect = 2e-08
Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 9/246 (3%)
Query: 12 TQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLY 71
+ Q SP ++ Q +DL++ ++ L I+S C +L L
Sbjct: 21 LSQGVIAFRCPRSFMDQPLAEHFSPFRV--QHMDLSNS-VIEVSTLHGILSQCSKLQNLS 77
Query: 72 LRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVS 131
L +L+D + + + S L L++S C+ ++F L L + L L+++ C +
Sbjct: 78 LEGL-RLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 135
Query: 132 -DAGLKVIARRCYKLRYLNARGCEAVSDDAITV-LARSCTRLRALDIGKCDVSDAGLRAL 189
+A + LN G + L R C L LD+ +
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195
Query: 190 AESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCI 249
++ LSL +C + + + L+ L + + + +K+ I
Sbjct: 196 FFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI-VPDGTLQLLKEALPHLQI 253
Query: 250 QISCLT 255
S T
Sbjct: 254 NCSHFT 259
Score = 46.6 bits (109), Expect = 3e-06
Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 7/219 (3%)
Query: 7 LTASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQ 66
L + +Q +DL++ + LQ L L + D ++ + +
Sbjct: 39 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTL-AKNSN 96
Query: 67 LIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVT-DFGLYELAKLGATLRYLSVA 125
L+ L L C ++ ++ + S CS+L EL++S C T +A + T+ L+++
Sbjct: 97 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 156
Query: 126 KCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKC-DVSDA 184
+ R + + L+ L + +C D+
Sbjct: 157 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 216
Query: 185 GLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQ 223
L L E P +K L + V D +Q + LQ
Sbjct: 217 TLLELGE-IPTLKTLQVFGI--VPDGTLQLLKEALPHLQ 252
Score = 41.2 bits (95), Expect = 1e-04
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 368 RYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD 427
+ + A C D S R++ +D+ + + L + C ++ LSL
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 428 LVTDRGVQCIAYYCRGLQQLNIQDCQ-ISVEGYRAVKKYCKRCIIEHTN 475
L +D V +A L +LN+ C S + + C R + +
Sbjct: 83 L-SDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 129
Score = 33.2 bits (74), Expect = 0.059
Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 75
LQ L L+ C I L L+ L + V D L L+ P L C
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI----NC 255
Query: 76 VKLTDIGI 83
T I
Sbjct: 256 SHFTTIAR 263
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 50.7 bits (119), Expect = 2e-07
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 171 LRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAY---YCRGLQQLNI 227
+++LDI ++SDA L + + L C L T+ + I+ L +LN+
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNL 62
Query: 228 QDCQISVEGYRAVKKYCKRCCIQISCL 254
+ ++ G V + + +I L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKL 89
Score = 49.2 bits (115), Expect = 7e-07
Identities = 22/111 (19%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 145 LRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLSL 201
++ L+ + CE +SD L + + + + C +++A + ++ P + +L+L
Sbjct: 4 IQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 202 RQCDLVTDRGVQCIA----YYCRGLQQLNIQDCQISVEGYRAVKKYCKRCC 248
R +L D GV C+ +Q+L++Q+C ++ G + +
Sbjct: 63 RSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 112
Score = 48.4 bits (113), Expect = 1e-06
Identities = 22/110 (20%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 367 LRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLSL 423
++ L+ + CE +SD L + + + + C +++A + ++ P + +L+L
Sbjct: 4 IQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 424 RQCDLVTDRGVQCIA----YYCRGLQQLNIQDCQISVEGYRAVKKYCKRC 469
R +L D GV C+ +Q+L++Q+C ++ G + +
Sbjct: 63 RSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 111
Score = 45.4 bits (105), Expect = 1e-05
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 166 RSCTRLRALDIGKCDVSDAGLRALAES---CPNIKKLSLRQCDLVTDRGVQCIAYYCR-- 220
+ + LR L + CDVSD+ +LA + ++++L L L D G+ + R
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVESVRQP 424
Query: 221 --GLQQLNIQDCQISVEGYRAVKKYCKRC 247
L+QL + D S E ++ K
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
Score = 45.4 bits (105), Expect = 1e-05
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 388 RSCTRLRALDIGKCDVSDAGLRALAES---CPNIKKLSLRQCDLVTDRGVQCIAYYCR-- 442
+ + LR L + CDVSD+ +LA + ++++L L L D G+ + R
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVESVRQP 424
Query: 443 --GLQQLNIQDCQISVEGYRAVKKYCKRC 469
L+QL + D S E ++ K
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
Score = 38.8 bits (88), Expect = 0.001
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 25/109 (22%)
Query: 222 LQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSL 281
+Q L+IQ ++S + + ++C Q + L DC + +
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQC----------------QVVRLDDC-GLTEARCKD 46
Query: 282 IVS---NCPQLIYLYLRRCVKLTDIGIKYVPSF----CSQLKELSVSDC 323
I S P L L LR +L D+G+ V ++++LS+ +C
Sbjct: 47 ISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 36.9 bits (83), Expect = 0.005
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLL-----LQFLDLTDCSNVDDQGLSLIVS---NCPQL 67
+Q LD+ C ++S A +LL Q + L DC + + I S P L
Sbjct: 4 IQSLDI---QCEELS--DARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPAL 57
Query: 68 IYLYLRRCVKLTDIGIKYVPSF----CSQLKELSVSDC 101
L LR +L D+G+ V ++++LS+ +C
Sbjct: 58 AELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 36.9 bits (83), Expect = 0.005
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 18/111 (16%)
Query: 187 RALAESCPNIKKLSLRQCDLVTDRGVQCIAY---YCRGLQQLNIQDCQISVEGYRAVKKY 243
+ L + ++ L L CD+ +D +A L++L++ + + G + +
Sbjct: 362 QGLGQPGSVLRVLWLADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 244 CKRCCIQISCLTASPTQLLLQFLDLTDC--SNVDDQGLSLIVSNCPQLIYL 292
++ LL+ L L D S + L + + P L +
Sbjct: 421 VRQPG------------CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 35.3 bits (79), Expect = 0.015
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 41 LQFLDLTDCSNVDDQGLSLI---VSNCPQLIYLYLRRCVKLTDIGIKY----VPSFCSQL 93
L+ L L DC +V D S + + L L L L D GI V L
Sbjct: 371 LRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLL 428
Query: 94 KELSVSDC--TQVTDFGLYELAKLGATLRYLS 123
++L + D ++ + L L K +LR +S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
Score = 35.3 bits (79), Expect = 0.017
Identities = 51/416 (12%), Positives = 126/416 (30%), Gaps = 25/416 (6%)
Query: 74 RCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGA---TLRYLSVAKCDQV 130
+C +L+D + Q + + + DC +T+ +++ L L++ ++
Sbjct: 10 QCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-EL 67
Query: 131 SDAGLKVIAR----RCYKLRYLNARGCEAVSDD--AITVLARSCTRLRALDIGKCDVSDA 184
D G+ + + K++ L+ + C ++ R+ L+ L + + DA
Sbjct: 68 GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127
Query: 185 GLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV------EGYR 238
GL+ L E + + + L+ G R
Sbjct: 128 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 187
Query: 239 AVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCV 298
+ + K Q+ L + L + +L + +
Sbjct: 188 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 247
Query: 299 KLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLK 358
+ + ++ C + + + +L +
Sbjct: 248 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 307
Query: 359 VIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESC--- 415
+ + ++ + A + + L L I + DAG+R L +
Sbjct: 308 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 367
Query: 416 -PNIKKLSLRQCDLVTDRGVQCIAY---YCRGLQQLNIQDCQISVEGYRAVKKYCK 467
++ L L CD+ +D +A L++L++ + + G + + +
Sbjct: 368 GSVLRVLWLADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422
Score = 29.6 bits (64), Expect = 0.90
Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 19/133 (14%)
Query: 192 SCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQI 251
++ + R D Q + L+ L + DC +S ++
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL----------A 390
Query: 252 SCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVS----NCPQLIYLYLRRCVKLTDIGIKY 307
+ L A+ + L+ LDL++ + D G+ +V L L L ++
Sbjct: 391 ATLLANHS---LRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDR 445
Query: 308 VPSFCSQLKELSV 320
+ + L V
Sbjct: 446 LQALEKDKPSLRV 458
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 43.7 bits (101), Expect = 3e-05
Identities = 26/309 (8%), Positives = 69/309 (22%), Gaps = 29/309 (9%)
Query: 144 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLS 200
KL + ++V ++ + + + R L+E S +++
Sbjct: 11 KLDAITTEDEKSVFAVL-----LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65
Query: 201 LRQCDLV-----TDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLT 255
++ + +L+ + G A +
Sbjct: 66 FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125
Query: 256 ASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQL 315
L + + + + + +L + +K
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185
Query: 316 KELSVSDC----------TQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCY 365
+ L + GL +L + S + + +
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245
Query: 366 KLRYL--NARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAES----CPNIK 419
+ L + L+ L + ++ +R L P++
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305
Query: 420 KLSLRQCDL 428
L L
Sbjct: 306 FLELNGNRF 314
Score = 32.2 bits (71), Expect = 0.15
Identities = 8/96 (8%), Positives = 25/96 (26%), Gaps = 13/96 (13%)
Query: 366 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLS 422
KL + ++V ++ + + + R L+E S +++
Sbjct: 11 KLDAITTEDEKSVFAVL-----LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65
Query: 423 LRQCDLV-----TDRGVQCIAYYCRGLQQLNIQDCQ 453
++ + +L+
Sbjct: 66 FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101
Score = 29.1 bits (63), Expect = 1.2
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSL---IVSNCPQLIYLYL 72
L L+ + + + LQ L L D +L I P L++L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309
Query: 73 RRCVKLTDIGIKYVPSFCSQLKEL 96
+ ++ +++E+
Sbjct: 310 NGN-RFSEED-----DVVDEIREV 327
Score = 27.5 bits (59), Expect = 3.9
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 417 NIKKLSLRQCDLVTDRGVQCIAY---YCRGLQQLNIQDCQISVEGYRAVKKYCKRC 469
+I+ SL+ + T + + ++++ + I E R + +
Sbjct: 4 SIEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 58
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 39.6 bits (91), Expect = 6e-04
Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 20/181 (11%)
Query: 168 CTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNI 227
T L L + + D G A S N+ L L + + L +L +
Sbjct: 218 LTNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAPLSG----LTKLTELKL 270
Query: 228 QDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCP 287
QIS A + + L L+ L + +S + S+
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV-SSLT 329
Query: 288 QLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLS 345
+L L+ K++D+ S + + LS Q++ L LA L + L
Sbjct: 330 KLQRLFFANN-KVSDV-----SSLANLTNINWLSAGHN-QIS--DLTPLANLTR-ITQLG 379
Query: 346 V 346
+
Sbjct: 380 L 380
Score = 31.1 bits (69), Expect = 0.33
Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 29/140 (20%)
Query: 3 QISCLTASPTQLLLQFLDLTDCSCIQISCLTASPTQLL----------------LQFLDL 46
QIS L L L L IS L L+ L
Sbjct: 252 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311
Query: 47 TDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSVSDCTQV 104
+ +S + S+ +L L+ K++D+ S + + LS Q+
Sbjct: 312 LTLYFNNISDISPV-SSLTKLQRLFFANN-KVSDV-----SSLANLTNINWLSAGHN-QI 363
Query: 105 TDFGLYELAKLGATLRYLSV 124
+ L LA L + L +
Sbjct: 364 S--DLTPLANLTR-ITQLGL 380
Score = 28.4 bits (62), Expect = 2.3
Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 23/171 (13%)
Query: 285 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYL 344
L L L +L DIG + + L +L +++ L L KL L
Sbjct: 217 ILTNLDELSLNGN-QLKDIG---TLASLTNLTDLDLANNQISNLAPLSGLTKL----TEL 268
Query: 345 SVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVS 404
+ + + L + N + + L L + ++S
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISN--------LKNLTYLTLYFNNIS 320
Query: 405 DAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
+ + S +++L + V +A + L+ QIS
Sbjct: 321 --DISPV-SSLTKLQRLFFANNKV---SDVSSLAN-LTNINWLSAGHNQIS 364
Score = 27.7 bits (60), Expect = 3.3
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLR 73
LQ L + +S L + +L D L+ N ++ L L
Sbjct: 331 LQRLFFANNKVSDVSSLANLTN---INWLSAGHNQISDLTPLA----NLTRITQLGLN 381
Score = 26.5 bits (57), Expect = 8.5
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 173 ALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 232
+GK +V+D + + L + + + GV+ Y L Q+N + Q+
Sbjct: 26 KTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVE----YLNNLTQINFSNNQL 78
Query: 233 S 233
+
Sbjct: 79 T 79
Score = 26.5 bits (57), Expect = 8.5
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 395 ALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 454
+GK +V+D + + L + + + GV+ Y L Q+N + Q+
Sbjct: 26 KTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVE----YLNNLTQINFSNNQL 78
Query: 455 S 455
+
Sbjct: 79 T 79
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 166
Score = 36.6 bits (83), Expect = 0.002
Identities = 19/139 (13%), Positives = 48/139 (34%), Gaps = 12/139 (8%)
Query: 180 DVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRG---LQQLNIQDCQISVEG 236
DV + L+ + + P++++++L + ++ A + +++ +I + +
Sbjct: 4 DVEET-LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV 62
Query: 237 YRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLI------ 290
A+ + K S S L L + + + L + N Q +
Sbjct: 63 AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 122
Query: 291 --YLYLRRCVKLTDIGIKY 307
L + L G +
Sbjct: 123 EIANMLEKNTTLLKFGYHF 141
Score = 33.9 bits (76), Expect = 0.018
Identities = 9/75 (12%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 402 DVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRG---LQQLNIQDCQISVEG 458
DV + L+ + + P++++++L + ++ A + +++ +I + +
Sbjct: 4 DVEET-LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV 62
Query: 459 YRAVKKYCKRCIIEH 473
A+ + K
Sbjct: 63 AFALAEMLKVNNTLK 77
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 34.8 bits (79), Expect = 0.009
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 184 AGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKY 243
A LR + E+ P + L+L L + I L+ LN+ ++ R + K
Sbjct: 55 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK--SERELDKI 112
Query: 244 CKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYL 292
+L L L+D +S I P+L+ L
Sbjct: 113 KGLKL----------EELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151
Score = 34.0 bits (77), Expect = 0.017
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 3/126 (2%)
Query: 29 ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 88
+ L + P + + + + L +I N P+L+ L L + +
Sbjct: 29 LKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 88
Query: 89 FCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLS---VAKCDQVSDAGLKVIARRCYKL 145
LK L++S ++ L ++ L +L ++ + + I R KL
Sbjct: 89 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKL 148
Query: 146 RYLNAR 151
L+
Sbjct: 149 LRLDGH 154
Score = 34.0 bits (77), Expect = 0.017
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 3/126 (2%)
Query: 251 ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 310
+ L + P + + + + L +I N P+L+ L L + +
Sbjct: 29 LKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 88
Query: 311 FCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLS---VAKCDQVSDAGLKVIARRCYKL 367
LK L++S ++ L ++ L +L ++ + + I R KL
Sbjct: 89 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKL 148
Query: 368 RYLNAR 373
L+
Sbjct: 149 LRLDGH 154
Score = 29.4 bits (65), Expect = 0.54
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 406 AGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
A LR + E+ P + L+L L + I L+ LN+ ++
Sbjct: 55 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 104
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 32.9 bits (73), Expect = 0.076
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 41 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 100
L+ L++++ L + + P+L L L ++ P LK+L V
Sbjct: 286 LEELNVSNNK------LIELPALPPRLERLIASFN-HLAEV-----PELPQNLKQLHVEY 333
Query: 101 C 101
Sbjct: 334 N 334
Score = 32.9 bits (73), Expect = 0.076
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 263 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 322
L+ L++++ L + + P+L L L ++ P LK+L V
Sbjct: 286 LEELNVSNNK------LIELPALPPRLERLIASFN-HLAEV-----PELPQNLKQLHVEY 333
Query: 323 C 323
Sbjct: 334 N 334
Score = 30.9 bits (68), Expect = 0.30
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 168 CTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNI 227
L L++ L L P +++L L + + L+QL++
Sbjct: 283 PPSLEELNVSNN-----KLIELPALPPRLERLIASFNHLAE------VPELPQNLKQLHV 331
Query: 228 QDCQIS 233
+ +
Sbjct: 332 EYNPLR 337
Score = 30.9 bits (68), Expect = 0.30
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 390 CTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNI 449
L L++ L L P +++L L + + L+QL++
Sbjct: 283 PPSLEELNVSNN-----KLIELPALPPRLERLIASFNHLAE------VPELPQNLKQLHV 331
Query: 450 QDCQIS 455
+ +
Sbjct: 332 EYNPLR 337
Score = 26.3 bits (56), Expect = 8.8
Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 33/109 (30%)
Query: 213 QCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCS 272
+ + L++LN+ + ++ L A P + L+ L +
Sbjct: 277 RSLCDLPPSLEELNVSNN-------------------KLIELPALPPR--LERLIASFNH 315
Query: 273 NVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVS 321
L+ + L L++ L + P +++L ++
Sbjct: 316 ------LAEVPELPQNLKQLHVEYN-PLREF-----PDIPESVEDLRMN 352
Score = 26.3 bits (56), Expect = 9.9
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 180 DVSDAGLRALAESCPNIKKLSLRQCDL 206
++++ GL +L E P+++ L L
Sbjct: 44 ELNNLGLSSLPELPPHLESLVASCNSL 70
Score = 26.3 bits (56), Expect = 9.9
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 402 DVSDAGLRALAESCPNIKKLSLRQCDL 428
++++ GL +L E P+++ L L
Sbjct: 44 ELNNLGLSSLPELPPHLESLVASCNSL 70
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 29.2 bits (64), Expect = 0.95
Identities = 19/181 (10%), Positives = 56/181 (30%), Gaps = 22/181 (12%)
Query: 144 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQ 203
+ + A + S I + + L + ++D + L
Sbjct: 47 SIDQIIANNSDIKSVQGI----QYLPNVTKLFLNGNKLTD---------IKPLANLKNLG 93
Query: 204 CDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLL 263
+ + V+ ++ + ++ + + + + + + +L
Sbjct: 94 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLS 153
Query: 264 QFLDLTDCSNVDDQGLSLI-VSNCPQLIYLYLRRCVKLTDIGIKYVPSF--CSQLKELSV 320
+ L S D+Q ++ ++ +L LYL + ++D+ + L L +
Sbjct: 154 RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDL-----RALAGLKNLDVLEL 207
Query: 321 S 321
Sbjct: 208 F 208
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 27.7 bits (60), Expect = 2.6
Identities = 22/193 (11%), Positives = 60/193 (31%), Gaps = 22/193 (11%)
Query: 144 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQ 203
+ L+A G + + + + L L++ ++D ++
Sbjct: 42 GITTLSAFGTGVTTIEGV----QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97
Query: 204 CDLVTDRGVQCIAYYCRG-------------LQQLNIQDCQISVEGYRAVKKYCKRCCIQ 250
++ G+Q I + + + +
Sbjct: 98 KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157
Query: 251 ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI-VSNCPQLIYLYLRRCVKLTDIGIKYVP 309
I S L LT D++ + +++ P LI ++L+ +++D+
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVS---PL 213
Query: 310 SFCSQLKELSVSD 322
+ S L +++++
Sbjct: 214 ANTSNLFIVTLTN 226
Score = 26.5 bits (57), Expect = 6.0
Identities = 10/56 (17%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 46 LTDCSNVDDQGLSLI-VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 100
LT D++ + +++ P LI ++L+ +++D+ + S L +++++
Sbjct: 175 LTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVS---PLANTSNLFIVTLTN 226
>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 27.5 bits (61), Expect = 3.8
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 235 EGYRAV---KKYCKRCCIQISCLTASPT-QLLLQFLDLTDCSNVDDQGLSLIVS-NCPQL 289
E R + K I ISCLT P + + + C +V+ ++ +L
Sbjct: 48 EHLRLLLRTKCRTYHDVIPISCLTEFPNVVQMAKLV----CEDVNVDRFYPVLYPKASRL 103
Query: 290 IYLYLRRCVKLT-DIGIKYV 308
I + + G+ Y
Sbjct: 104 IVTFDEHVISNNFKFGVIYQ 123
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 26.5 bits (57), Expect = 6.7
Identities = 16/133 (12%), Positives = 41/133 (30%), Gaps = 4/133 (3%)
Query: 166 RSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQL 225
++ L L + +S A A +++L L + L + + + L+
Sbjct: 52 KNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLKELP--EKMPKTLQELRVH 108
Query: 226 NIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFL-DLTDCSNVDDQGLSLIVS 284
+ ++ + + + ++ Q + L+ D ++
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168
Query: 285 NCPQLIYLYLRRC 297
P L L+L
Sbjct: 169 LPPSLTELHLDGN 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.139 0.428
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,726,540
Number of extensions: 81656
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 52
Length of query: 479
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 390
Effective length of database: 1,185,626
Effective search space: 462394140
Effective search space used: 462394140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.7 bits)