BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy534
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AXT|H Chain H, Immune Versus Natural Selection: Antibody Aldolases With
The Rates Of Natural Enzymes
pdb|3FO9|H Chain H, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
pdb|3FO9|B Chain B, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
Length = 218
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 32 DSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRS 83
D+Y TH AE KG+ ISR D +S L + +R D G Y CK+ F + S
Sbjct: 56 DNYATHYAESVKGKFTISRDDSKSRL---YLQMNSLRTEDTGIYYCKIYFYSFS 106
>pdb|2J12|B Chain B, Ad37 Fibre Head In Complex With Car D1
pdb|2J1K|A Chain A, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|B Chain B, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|G Chain G, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|J Chain J, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|K Chain K, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|O Chain O, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|P Chain P, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|T Chain T, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|V Chain V, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|X Chain X, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Y Chain Y, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Z Chain Z, Cav-2 Fibre Head In Complex With Car D1
Length = 128
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
I+ D YP + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 67 IYDDYYP-----DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 110
>pdb|2WBW|B Chain B, Ad37 Fibre Head In Complex With Car D1 And Sialic Acid
Length = 128
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
I+ D YP + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 67 IYDDYYP-----DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 110
>pdb|2W9L|A Chain A, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|B Chain B, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|G Chain G, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|J Chain J, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|K Chain K, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|O Chain O, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|P Chain P, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|T Chain T, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|V Chain V, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|X Chain X, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Y Chain Y, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Z Chain Z, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
Length = 124
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
I+ D YP + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 64 IYDDYYP-----DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 107
>pdb|1F5W|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1F5W|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1EAJ|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
pdb|1EAJ|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
Length = 126
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
I+ D YP + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 65 IYDDYYP-----DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 108
>pdb|1JEW|R Chain R, Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its
Cellular Receptor, Coxsackievirus And Adenovirus
Receptor (Car)
Length = 120
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
I+ D YP + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 59 IYDDYYP-----DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 102
>pdb|1KAC|B Chain B, Knob Domain From Adenovirus Serotype 12 In Complex With
Domain 1 Of Its Cellular Receptor Car
pdb|1P69|B Chain B, Structural Basis For Variation In Adenovirus Affinity For
The Cellular Receptor Car (P417s Mutant)
pdb|1P6A|B Chain B, Structural Basis For Variation In Asdenovirus Affinity For
The Cellular Receptor Car (S489y Mutant)
Length = 124
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
I+ D YP + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 59 IYDDYYP-----DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 102
>pdb|1RSF|A Chain A, Nmr Structure Of Monomeric Car D1 Domain
Length = 126
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
I+ D YP + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 61 IYDDYYP-----DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 104
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
P W+ + + GRI ++ ES + +L + + ESDQG YEC
Sbjct: 138 PEITWFKDFLPVDTSNNNGRIKQLRSES---IGALQIEQSEESDQGKYEC 184
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 69 DQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTE---LRISNIRSQDIGDYTCLAT 125
D GWY K+ N S G + N G++ LRIS++R +D G Y C A
Sbjct: 33 DTGWYRTKLGSTNEQSISI-GGRYVE-----TVNKGSKSFSLRISDLRVEDSGTYKCQAF 86
Query: 126 HVLYPD 131
+V + +
Sbjct: 87 YVFFAE 92
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 36 THEAEEYKGR-ISRVDKES-----PFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKN 89
H +GR + VD+ S PF M + I E +C+ ++ N
Sbjct: 329 CHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPN 388
Query: 90 GTWF-HLDVH---GVFNDGTELRISNIRSQDIGDYTCLATHV 127
GT H H V NDGT L S++ D G YTC+ T+V
Sbjct: 389 GTVLSHASRHPRISVLNDGT-LNFSHVLLSDTGVYTCMVTNV 429
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 31 YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
YD+Y + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 61 YDNY----YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKV 103
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 31 YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
YD+Y + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 63 YDNY----YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKV 105
>pdb|3EIX|A Chain A, Crystal Structure Of Selenomethionine Labelled
Staphylococcus Aureus Lipoprotein, Htsa
Length = 296
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 95 LDVH--GVFNDGTELRISNIRSQDIGDYTCLATH---------VLYPDLLVVLGSFH 140
LDV G+ +DG + RI + IGDYT + T L PDL++ S H
Sbjct: 40 LDVKPVGIADDGKKKRIIKPVREKIGDYTSVGTRKQPNLEEISKLKPDLIIADSSRH 96
>pdb|3EIW|A Chain A, Crystal Structure Of Staphylococcus Aureus Lipoprotein,
Htsa
pdb|3LHS|A Chain A, Open Conformation Of Htsa Complexed With Staphyloferrin A
pdb|3LI2|A Chain A, Closed Conformation Of Htsa Complexed With Staphyloferrin
A
pdb|3LI2|B Chain B, Closed Conformation Of Htsa Complexed With Staphyloferrin
A
Length = 296
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 95 LDVH--GVFNDGTELRISNIRSQDIGDYTCLATH---------VLYPDLLVVLGSFH 140
LDV G+ +DG + RI + IGDYT + T L PDL++ S H
Sbjct: 40 LDVKPVGIADDGKKKRIIKPVREKIGDYTSVGTRKQPNLEEISKLKPDLIIADSSRH 96
>pdb|1IGC|H Chain H, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
Length = 222
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)
Query: 27 VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNS 86
YI S H A+ KGR + + +++P L +T +R D G Y C
Sbjct: 49 AYISSGSSTLHYADTVKGRFT-ISRDNPKNTLFLQMTSLRSEDTGMYYCA---------R 98
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSF 139
N ++ +D G GT + +S+ ++ Y + +V LG
Sbjct: 99 WGNYPYYAMDYWG---QGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCL 148
>pdb|1SM3|H Chain H, Crystal Structure Of The Tumor Specific Antibody Sm3
Complex With Its Peptide Epitope
Length = 218
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 32 DSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
++Y TH AE KGR ISR D +S L + +R D G Y C V
Sbjct: 56 NNYATHYAESVKGRFTISRDDSKS---SVYLQMNNLRAEDTGIYYCTGV 101
>pdb|1PY9|A Chain A, The Crystal Structure Of An Autoantigen In Multiple
Sclerosis
Length = 116
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 36 THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
+A EY+GR + + G +L + +R SD+G Y C
Sbjct: 58 AEQAPEYRGRTELLKETISEGKVTLRIQNVRFSDEGGYTC 97
>pdb|1PKQ|E Chain E, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|J Chain J, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 139
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 36 THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
+A EY+GR + + G +L + +R SD+G Y C
Sbjct: 63 AEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTC 102
>pdb|1PKO|A Chain A, Myelin Oligodendrocyte Glycoprotein (Mog)
Length = 139
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 36 THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
+A EY+GR + + G +L + +R SD+G Y C
Sbjct: 63 AEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTC 102
>pdb|1PZ5|B Chain B, Structural Basis Of Peptide-Carbohydrate Mimicry In An
Antibody Combining Site
Length = 220
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 32 DSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
++Y TH AE KGR ISR D +S L + +R D G Y C
Sbjct: 56 NNYATHYAESVKGRFTISRDDSKSSV---YLQMNNLRAEDTGIYYC 98
>pdb|3CSP|A Chain A, Crystal Structure Of The Dm2 Mutant Of Myelin
Oligodendrocyte Glycoprotein
Length = 139
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 36 THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
+A EY+GR + + G +L + +R SD+G Y C
Sbjct: 63 AEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTC 102
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYPDLLVV 135
LRI N+R D G YTC Y + V
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDAEYQEEAAV 115
>pdb|4ALA|L Chain L, Structure Of Dengue Virus Diii In Complex With Fab 2h12
pdb|4AM0|B Chain B, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|D Chain D, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|F Chain F, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|L Chain L, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
Length = 212
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
L ISN++S+D+ DY CL H YP
Sbjct: 73 LTISNVQSEDLADYFCLQ-HWTYP 95
>pdb|4AL8|L Chain L, Structure Of Dengue Virus Diii In Complex With Fab 2h12
Length = 213
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
L ISN++S+D+ DY CL H YP
Sbjct: 73 LTISNVQSEDLADYFCLQ-HWTYP 95
>pdb|1M71|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide
pdb|1M7D|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Trisaccharide
pdb|1M7I|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Pentasaccharide
Length = 220
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 32 DSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
++Y TH AE KGR ISR D +S L + +R D G Y C
Sbjct: 56 NNYATHYAESVKGRFTISRDDSKS---SVYLQMNNLRAEDTGIYYC 98
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 96 DVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
D + L+I N+R D G YTC+AT
Sbjct: 53 DPRATIQEQGTLQIKNLRISDTGTYTCVATS 83
>pdb|4GOS|A Chain A, Crystal Structure Of Human B7-H4 Igv-Like Domain
Length = 125
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 36 THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSH 87
+ + E ++GR + + G ASL L ++ +D G Y+C ++ N++
Sbjct: 62 SEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNAN 113
>pdb|4HF5|H Chain H, Crystal Structure Of Fab 8f8 In Complex A H2n2 Influenza
Virus Hemagglutinin
Length = 233
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
IWYD T+ A+ +GR++ V +++ L + ++R D Y C
Sbjct: 51 IWYDGSKTYFADSMRGRLT-VSRDNSKNALYLQMNRLRAEDTAVYYC 96
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 99 GVFNDGTELRISNIRSQDIGDYTCLATH 126
V +DGT L +N+ QD G YTC+ T+
Sbjct: 363 SVLHDGT-LNFTNVTVQDTGQYTCMVTN 389
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 54 PFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWF-HLDVH---GVFNDGTELRI 109
PF M + I E +C+ ++ NGT H H V NDGT L
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT-LNF 66
Query: 110 SNIRSQDIGDYTCLATHV 127
S++ D G YTC+ T+V
Sbjct: 67 SHVLLSDTGVYTCMVTNV 84
>pdb|3C5Z|A Chain A, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|E Chain E, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
Length = 202
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPF----------GMASLNLTK--IRESDQGWY 73
P WY YP E ++ R SR DKE G S +L K ++ESD Y
Sbjct: 30 PALFWYVQYP-GEGPQFLFRASR-DKEKGSSRGFEATYDKGTTSFHLRKASVQESDSAVY 87
Query: 74 ECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRI-SNIRSQDIGDY 120
C +V N + VF GT L++ NI++ D Y
Sbjct: 88 YCALVISNTN--------------KVVFGTGTRLQVLPNIQNPDPAVY 121
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 58 ASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTE---LRISNIRS 114
ASL L D GWY K+ N S G + N G++ LRIS++R
Sbjct: 27 ASLEL-----KDTGWYRTKLGSTNEQSISI-GGRYVE-----TVNKGSKSFSLRISDLRV 75
Query: 115 QDIGDYTCLATHVL 128
+D G Y C A + L
Sbjct: 76 EDSGTYKCQAFYSL 89
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 28.9 bits (63), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVL 128
+K G D N LRI+N+ +D G+Y CLA++ +
Sbjct: 257 YKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKM 298
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 69 DQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTE---LRISNIRSQDIGDYTCLAT 125
D GWY K+ N S G + N G++ LRIS++R +D G Y C A
Sbjct: 33 DTGWYRTKLGSTNEQSISI-GGRYVE-----TVNKGSKSFSLRISDLRVEDSGTYKCQAF 86
Query: 126 HVL 128
+ L
Sbjct: 87 YSL 89
>pdb|3NZH|H Chain H, Crystal Structure Of Anti-Emmprin Antibody 5f6 Fab
Length = 226
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 34 YPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
Y TH AE KGR ISR D +S L + +R D G Y C
Sbjct: 59 YATHYAESVKGRFTISRDDSKS---SVYLQMNNLRAEDTGIYYC 99
>pdb|3IY5|B Chain B, Variable Domains Of The Mouse Fab (1aif) Fitted Into The
Cryoem Reconstruction Of The Virus-Fab 16 Complex
Length = 122
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 32 DSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
D++ TH AE KG+ ISR D +S L + +R D G Y C
Sbjct: 56 DNFATHYAESVKGKFIISRDDSKSRL---YLQMNSLRAEDTGIYYC 98
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 69 DQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTE---LRISNIRSQDIGDYTCLAT 125
D GWY K+ N S G + N G++ LRIS++R +D G Y C A
Sbjct: 33 DTGWYRTKLGSTNEQSISI-GGRYVE-----TVNKGSKSFSLRISDLRVEDSGTYKCQAF 86
Query: 126 HVL 128
+ L
Sbjct: 87 YSL 89
>pdb|1IAI|I Chain I, Idiotype-Anti-Idiotype Fab Complex
pdb|1AIF|H Chain H, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|B Chain B, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
Length = 218
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 32 DSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKN 89
D++ TH AE KG+ ISR D +S L + +R D G Y C + L
Sbjct: 56 DNFATHYAESVKGKFIISRDDSKSRL---YLQMNSLRAEDTGIYYCVLRPL--------- 103
Query: 90 GTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSF 139
++ +D G GT + +S+ ++ Y + +V LG
Sbjct: 104 -FYYAVDYWG---QGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCL 149
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
IW D H A+ KGR ISR D ++ L + +R D G Y C
Sbjct: 51 IWDDGSDQHYADSVKGRFTISRNDSKNTL---FLQMDSLRPEDTGVYFC 96
>pdb|1MJ8|L Chain L, High Resolution Crystal Structure Of The Fab Fragment Of
The Esterolytic Antibody Ms6-126
Length = 219
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
LRIS + ++D+G Y CL H+ YP
Sbjct: 78 LRISRVEAEDVGVYYCLQ-HLEYP 100
>pdb|1MH5|A Chain A, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
pdb|1MH5|L Chain L, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
Length = 219
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
LRIS + ++D+G Y CL H+ YP
Sbjct: 78 LRISRVEAEDVGVYYCLQ-HLEYP 100
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 99 GVFNDGTELRISNIRSQDIGDYTCLATH 126
V +DGT L +N+ QD G YTC+ ++
Sbjct: 392 AVLSDGT-LNFTNVTVQDTGMYTCMVSN 418
>pdb|1MJJ|A Chain A, High Resolution Crystal Structure Of The Complex Of The
Fab Fragment Of Esterolytic Antibody Ms6-12 And A
Transition- State Analog
pdb|1MJJ|L Chain L, High Resolution Crystal Structure Of The Complex Of The
Fab Fragment Of Esterolytic Antibody Ms6-12 And A
Transition- State Analog
pdb|1MJU|L Chain L, 1.22 Angstrom Resolution Crystal Structure Of The Fab
Fragment Of Esterolytic Antibody Ms6-12
Length = 219
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
LRIS + ++D+G Y CL H+ YP
Sbjct: 78 LRISRVEAEDVGVYYCLQ-HLEYP 100
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 103 DGTELRISNIRSQDIGDYTCLATHVL 128
DG L ISN+ D G+Y C+A +++
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLV 193
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 103 DGTELRISNIRSQDIGDYTCLATHVL 128
DG L ISN+ D G+Y C+A +++
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLV 193
>pdb|3V6O|E Chain E, Leptin Receptor-Antibody Complex
pdb|3V6O|F Chain F, Leptin Receptor-Antibody Complex
pdb|3VG0|L Chain L, Antibody Fab Fragment
Length = 215
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
L I+N++S+D+ DY CL H YP
Sbjct: 74 LTINNVKSEDLADYFCLQ-HWNYP 96
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 99 GVFNDGTELRISNIRSQDIGDYTCLATHVL 128
V G+ LRI N++ +D G Y C+A + L
Sbjct: 148 AVLESGS-LRIHNVQKEDAGQYRCVAKNSL 176
>pdb|3QUM|L Chain L, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|M Chain M, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 219
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
LRIS + ++D+G Y C+ H+ YP
Sbjct: 78 LRISRVEAEDVGVYYCMQ-HLEYP 100
>pdb|1ZVY|A Chain A, Crystal Structure Of The Vhh D3-l11 In Complex With Hen
Egg White Lysozyme
Length = 136
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 86 SHKNGTWFHLDVHGVFNDGTE-------LRISNIRSQDIGDYTCLATHVLYP 130
+H T++ V G F + LR+ +++S+D YTC AT P
Sbjct: 53 THTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATRKYVP 104
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 104 GTELRISNIRSQDIGDYTCLATH 126
G+ L ISN+ D G YTC+ T+
Sbjct: 274 GSNLLISNVTDDDSGTYTCVVTY 296
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 91 TWFHLDVHGVFNDGT-ELRISNIRSQDIGDYTCLA 124
+WF V+G F T EL I NI + G YTC A
Sbjct: 236 SWF---VNGTFQQSTQELFIPNITVNNSGSYTCQA 267
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 20 ADDEDIPVYIW---YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
A+ E IP W D + E + K R++ + G +SL++ ++ SD G Y+C+
Sbjct: 24 AEGEPIPEITWKRAVDGFTFTEGD--KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 81
Query: 77 VV 78
Sbjct: 82 AA 83
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 13 MLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRI-SRVDKESPFGM--ASLNLTKIRESD 69
M S G ++E + + YDS + GR +RVD S+ L ++ESD
Sbjct: 156 MFSSGSHTEEETV---LSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESD 212
Query: 70 QGWYECKV 77
QG Y C +
Sbjct: 213 QGIYTCSI 220
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 20 ADDEDIPVYIW---YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
A+ E IP W D + E + K R++ + G +SL++ ++ SD G Y+C+
Sbjct: 118 AEGEPIPEITWKRAVDGFTFTEGD--KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 175
Query: 77 VV 78
Sbjct: 176 AA 177
>pdb|3V4P|L Chain L, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|N Chain N, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|L Chain L, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|N Chain N, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 217
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 16/59 (27%)
Query: 87 HKNGTWFHLDVHGVFN-------------DGTE--LRISNIRSQDIGDYTCL-ATHVLY 129
HK G L ++G+ N GT+ L+IS I+ +D+G Y CL TH Y
Sbjct: 43 HKPGQSPQLLIYGISNRFSGVPDRFSGSGSGTDFTLKISTIKPEDLGMYYCLQGTHQPY 101
>pdb|3VI3|L Chain L, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|E Chain E, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|L Chain L, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|E Chain E, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 219
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
LRIS + + D+G Y CL H+ YP
Sbjct: 78 LRISRVEAADVGIYFCLQ-HLEYP 100
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 28 YIWYDS-YPTHEAEEYKGRISRVDKE 52
+I++D YPT ++EE K ++R++KE
Sbjct: 377 WIYFDGEYPTIDSEEVKRELARIEKE 402
>pdb|1I8I|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The Peptide
Antigen Of The Mutant Epidermal Growth Factor Receptor,
Egfrviii, At Room Temperature
pdb|1I8K|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The Peptide
Antigen Of The Mutant Epidermal Growth Factor Receptor,
Egfrviii, At Liquid Nitrogen Temperature
Length = 107
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 67 ESDQGWYECKV----VFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
+ D WY+ K FL N+ + G G D I N S+D+GDY C
Sbjct: 30 DDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFV-FTIENTLSEDVGDYYC 88
Query: 123 LAT 125
L +
Sbjct: 89 LQS 91
>pdb|2RCJ|A Chain A, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|B Chain B, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|E Chain E, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|F Chain F, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|I Chain I, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|J Chain J, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|M Chain M, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|N Chain N, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|Q Chain Q, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|R Chain R, Solution Structure Of Human Immunoglobulin M
Length = 218
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 29 IWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNS 86
IW D H A+ KGR ISR D ++ L + +R D G Y C + +P+
Sbjct: 51 IWDDGSDQHYADSVKGRFTISRNDSKNTL---FLQMDSLRPEDTGVYFCARDGGSSAPDY 107
Query: 87 HKNGT 91
GT
Sbjct: 108 WGQGT 112
>pdb|1AE6|L Chain L, Igg-Fab Fragment Of Mouse Monoclonal Antibody Ctm01
Length = 219
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
LR+S + ++D+G Y C+ H+ YP
Sbjct: 78 LRVSRVEAEDVGVYYCMQ-HLEYP 100
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 56 GMASLNLTKIRESDQGWYECKV 77
G ASL L ++R +D+G Y C V
Sbjct: 70 GNASLRLQRVRVTDEGSYTCFV 91
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79
Y+ R + + G A+L +T ++ D G Y C + +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY 101
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79
Y+ R + + G A+L +T ++ D G Y C + +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY 101
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79
Y+ R + + G A+L +T ++ D G Y C + +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY 101
>pdb|1J6P|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Of
CytosinedemaniaseCHLOROHYDROLASE FAMILY (TM0936) FROM
THERMOTOGA Maritima At 1.9 A Resolution
Length = 418
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 28 YIWYDS-YPTHEAEEYKGRISRVDKE 52
+I++D YPT ++EE K ++R++KE
Sbjct: 389 WIYFDGEYPTIDSEEVKRELARIEKE 414
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular
Fragment D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular
Fragment D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular
Fragment D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular
Fragment D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular
Fragment D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular
Fragment D1-D2
Length = 218
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 27 VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ + + Y H + Y+GR+ + S+ L ++D+G YEC+V
Sbjct: 48 LALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRV 98
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 20 ADDEDIPVYIW---YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
A+ E IP W D + E + K R++ + G +SL++ ++ SD G Y+C+
Sbjct: 24 AEGEPIPEITWKRAVDGFTFTEGD--KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 81
Query: 77 VV 78
Sbjct: 82 AA 83
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 105 TELRISNIRSQDIGDYTCLATHVLYPDLLV 134
T + I N+ S DIG+Y C A++ + D V
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGSDTCV 469
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 107 LRISNIRSQDIGDYTCLATHVL 128
LR++N+ +D G+Y C AT+ +
Sbjct: 184 LRLANVSERDGGEYLCRATNFI 205
>pdb|4GJT|B Chain B, Complex Structure Of Nectin-4 Bound To Mv-H
pdb|4GJT|C Chain C, Complex Structure Of Nectin-4 Bound To Mv-H
Length = 123
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ + Y H + Y+GR+ + S+ L ++D+G YEC+V
Sbjct: 51 LLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRV 99
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 26.2 bits (56), Expect = 6.4, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 57 MASLNLTKIRESDQGWYECKV 77
+ SL L + +D+GWY C V
Sbjct: 508 LVSLTLNLVTRADEGWYWCGV 528
>pdb|2FB4|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 229
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
IW D H A+ KGR ISR D ++ L + +R D G Y C
Sbjct: 51 IWDDGSDQHYADSVKGRFTISRNDSKNTL---FLQMDSLRPEDTGVYFC 96
>pdb|2V7N|B Chain B, Unusual Twinning In Crystals Of The Cits Binding Antibody
Fab Fragment F3p4
pdb|2V7N|D Chain D, Unusual Twinning In Crystals Of The Cits Binding Antibody
Fab Fragment F3p4
pdb|2V7N|F Chain F, Unusual Twinning In Crystals Of The Cits Binding Antibody
Fab Fragment F3p4
pdb|2V7N|H Chain H, Unusual Twinning In Crystals Of The Cits Binding Antibody
Fab Fragment F3p4
Length = 229
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHK 88
IWY T+ A+ KGR + + +++ L + +R D Y C +
Sbjct: 51 IWYSGSNTYYADSVKGRFT-ISRDNSKNTLYLQMNSLRAEDTAVYYC----------ARF 99
Query: 89 NGTWFHLDVHGVFNDGTELRISNIRSQ 115
G W DV G GT + +S+ ++
Sbjct: 100 AGGWGAYDVWG---QGTLVTVSSASTK 123
>pdb|4DTG|L Chain L, Hemostatic Effect Of A Monoclonal Antibody Mab 2021
Blocking The Interaction Between Fxa And Tfpi In A
Rabbit Hemophilia Model
Length = 219
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 107 LRISNIRSQDIGDYTCL-ATH 126
L+IS + ++D+G Y CL ATH
Sbjct: 78 LKISRVEAEDVGVYYCLQATH 98
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 107 LRISNIRSQDIGDYTCLA 124
L I N+ +D G+YTCLA
Sbjct: 181 LYIRNVTFEDAGEYTCLA 198
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 107 LRISNIRSQDIGDYTCLA 124
L I N+ +D G+YTCLA
Sbjct: 181 LYIRNVTFEDAGEYTCLA 198
>pdb|3BGF|L Chain L, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
pdb|3BGF|C Chain C, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
Length = 212
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
L IS++ S+D DY CL +V YP
Sbjct: 73 LTISSLESEDFADYYCLQ-YVSYP 95
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 107 LRISNIRSQDIGDYTCLA 124
L I N+ +D G+YTCLA
Sbjct: 180 LYIRNVTFEDAGEYTCLA 197
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 107 LRISNIRSQDIGDYTCLA 124
L I N+ +D G+YTCLA
Sbjct: 181 LYIRNVTFEDAGEYTCLA 198
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 107 LRISNIRSQDIGDYTCLA 124
L I N+ +D G+YTCLA
Sbjct: 179 LYIRNVTFEDAGEYTCLA 196
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 107 LRISNIRSQDIGDYTCLA 124
L I N+ +D G+YTCLA
Sbjct: 181 LYIRNVTFEDAGEYTCLA 198
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 107 LRISNIRSQDIGDYTCLATHVL 128
L I+ + D+G+YTC+ T+ +
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTV 179
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 107 LRISNIRSQDIGDYTCLATHVL 128
L I+ + D+G+YTC+ T+ +
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTV 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,676,856
Number of Sequences: 62578
Number of extensions: 190363
Number of successful extensions: 1205
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 170
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)