Query psy534
Match_columns 145
No_of_seqs 124 out of 1174
Neff 9.5
Searched_HMMs 46136
Date Sat Aug 17 00:04:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.7 1.4E-16 3E-21 130.8 13.7 125 8-140 343-519 (1051)
2 KOG3513|consensus 99.6 1.4E-14 3E-19 119.3 13.3 120 8-137 253-423 (1051)
3 PHA02826 IL-1 receptor-like pr 99.5 8.8E-13 1.9E-17 94.1 11.1 127 8-134 34-218 (227)
4 PHA02785 IL-beta-binding prote 99.4 9.6E-12 2.1E-16 93.3 11.1 112 12-134 137-321 (326)
5 KOG4221|consensus 99.4 1.7E-11 3.8E-16 101.8 12.8 119 11-138 155-329 (1381)
6 PHA02785 IL-beta-binding prote 99.4 1.3E-11 2.8E-16 92.6 11.2 109 10-129 40-201 (326)
7 KOG4194|consensus 99.3 2.1E-11 4.6E-16 95.8 10.4 115 10-129 626-785 (873)
8 cd05892 Ig_Myotilin_C C-termin 99.3 1.7E-11 3.7E-16 73.0 6.8 62 15-80 2-63 (75)
9 cd05763 Ig_1 Subgroup of the i 99.3 3.1E-11 6.8E-16 71.6 7.2 61 15-80 2-62 (75)
10 cd05852 Ig5_Contactin-1 Fifth 99.3 2E-11 4.2E-16 72.3 6.2 60 12-80 2-61 (73)
11 cd05867 Ig4_L1-CAM_like Fourth 99.3 2.3E-11 4.9E-16 72.5 6.3 61 12-79 2-62 (76)
12 KOG4221|consensus 99.2 2E-11 4.3E-16 101.5 7.5 124 6-137 247-418 (1381)
13 cd05894 Ig_C5_MyBP-C C5 immuno 99.2 2.8E-11 6E-16 73.9 6.0 69 7-80 6-74 (86)
14 cd05745 Ig3_Peroxidasin Third 99.2 3.4E-11 7.5E-16 71.3 5.7 61 11-80 2-62 (74)
15 cd05893 Ig_Palladin_C C-termin 99.2 3.5E-11 7.5E-16 71.6 5.7 63 14-80 1-63 (75)
16 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 4.8E-11 1E-15 70.7 6.3 59 15-80 2-60 (74)
17 cd05734 Ig7_DSCAM Seventh immu 99.2 1E-10 2.2E-15 70.1 6.7 60 15-80 2-66 (79)
18 cd05855 Ig_TrkB_d5 Fifth domai 99.2 1.2E-10 2.6E-15 69.9 6.8 63 16-80 3-66 (79)
19 cd05876 Ig3_L1-CAM Third immun 99.2 6E-11 1.3E-15 69.8 5.3 58 14-80 1-58 (71)
20 cd05746 Ig4_Peroxidasin Fourth 99.2 6.5E-11 1.4E-15 69.2 5.4 58 14-80 1-58 (69)
21 cd05857 Ig2_FGFR Second immuno 99.2 1.9E-10 4.1E-15 69.7 7.7 67 9-80 7-73 (85)
22 cd05744 Ig_Myotilin_C_like Imm 99.2 1.6E-10 3.5E-15 68.7 7.2 62 15-80 2-63 (75)
23 cd05743 Ig_Perlecan_D2_like Im 99.2 1.6E-10 3.4E-15 69.2 7.0 63 12-80 2-64 (78)
24 cd07702 Ig2_VEGFR-1 Second imm 99.2 4.2E-11 9.1E-16 70.7 4.4 57 15-80 2-58 (72)
25 cd05851 Ig3_Contactin-1 Third 99.2 1.5E-10 3.3E-15 70.9 7.0 63 8-80 13-75 (88)
26 cd04969 Ig5_Contactin_like Fif 99.2 9.9E-11 2.1E-15 69.1 6.0 60 12-80 2-61 (73)
27 cd05863 Ig2_VEGFR-3 Second imm 99.2 4.8E-11 1E-15 69.5 4.4 52 15-80 2-53 (67)
28 cd05760 Ig2_PTK7 Second immuno 99.2 1.6E-10 3.6E-15 69.0 6.7 59 15-80 2-60 (77)
29 cd05723 Ig4_Neogenin Fourth im 99.1 1.4E-10 3.1E-15 68.2 6.0 58 14-80 2-59 (71)
30 cd05748 Ig_Titin_like Immunogl 99.1 2.5E-10 5.3E-15 67.5 7.1 61 14-80 2-62 (74)
31 cd05868 Ig4_NrCAM Fourth immun 99.1 1.5E-10 3.3E-15 69.0 6.0 62 12-80 2-63 (76)
32 cd05750 Ig_Pro_neuregulin Immu 99.1 6E-10 1.3E-14 65.8 8.1 63 14-80 1-65 (75)
33 cd04976 Ig2_VEGFR Second immun 99.1 1.2E-10 2.5E-15 68.6 5.0 55 15-79 2-56 (71)
34 cd05725 Ig3_Robo Third immunog 99.1 2.6E-10 5.5E-15 66.6 6.4 56 15-80 2-57 (69)
35 cd05870 Ig5_NCAM-2 Fifth immun 99.1 3E-10 6.5E-15 70.9 7.0 71 7-80 12-86 (98)
36 cd05726 Ig4_Robo Fhird immunog 99.1 3.8E-10 8.3E-15 69.3 7.3 63 12-80 2-69 (90)
37 cd05848 Ig1_Contactin-5 First 99.1 3.2E-10 6.8E-15 70.3 6.7 64 9-80 17-81 (94)
38 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 4.7E-10 1E-14 67.7 7.2 64 16-80 3-68 (81)
39 cd05765 Ig_3 Subgroup of the i 99.1 4.4E-10 9.5E-15 67.4 7.1 63 12-80 2-69 (81)
40 cd05864 Ig2_VEGFR-2 Second imm 99.1 1.4E-10 3E-15 68.1 4.7 55 15-80 2-56 (70)
41 KOG4222|consensus 99.1 6.1E-10 1.3E-14 92.4 9.9 114 9-129 44-211 (1281)
42 cd04978 Ig4_L1-NrCAM_like Four 99.1 2.9E-10 6.2E-15 67.4 6.0 62 12-80 2-63 (76)
43 cd05740 Ig_CEACAM_D4 Fourth im 99.1 3.4E-10 7.4E-15 69.8 6.5 64 7-80 14-77 (91)
44 cd04975 Ig4_SCFR_like Fourth i 99.1 1.5E-10 3.2E-15 72.8 4.7 75 3-80 10-87 (101)
45 cd05713 Ig_MOG_like Immunoglob 99.1 6.9E-10 1.5E-14 69.3 7.7 66 14-79 18-86 (100)
46 cd05732 Ig5_NCAM-1_like Fifth 99.1 7.6E-10 1.6E-14 68.5 7.5 70 8-80 13-84 (96)
47 cd05869 Ig5_NCAM-1 Fifth immun 99.1 8.6E-10 1.9E-14 68.7 7.8 68 10-80 16-85 (97)
48 cd04972 Ig_TrkABC_d4 Fourth do 99.1 6E-10 1.3E-14 68.4 6.6 67 8-80 12-78 (90)
49 cd05733 Ig6_L1-CAM_like Sixth 99.1 1E-09 2.2E-14 65.5 7.2 60 15-80 2-65 (77)
50 cd04974 Ig3_FGFR Third immunog 99.1 1.2E-09 2.5E-14 67.2 7.5 69 12-80 2-77 (90)
51 cd05737 Ig_Myomesin_like_C C-t 99.0 8E-10 1.7E-14 68.2 6.5 69 7-80 12-80 (92)
52 cd05902 Ig_Neurocan Immunoglob 99.0 6.2E-10 1.4E-14 70.9 6.2 66 14-79 23-93 (110)
53 cd05849 Ig1_Contactin-1 First 99.0 5.7E-10 1.2E-14 69.1 5.7 63 9-80 17-80 (93)
54 cd05736 Ig2_Follistatin_like S 99.0 1.1E-09 2.4E-14 65.0 6.6 60 15-80 2-61 (76)
55 cd05850 Ig1_Contactin-2 First 99.0 9.6E-10 2.1E-14 68.1 6.5 62 11-80 19-81 (94)
56 cd05856 Ig2_FGFRL1-like Second 99.0 5.1E-10 1.1E-14 67.1 5.1 65 8-80 6-70 (82)
57 cd05866 Ig1_NCAM-2 First immun 99.0 1E-09 2.2E-14 67.8 6.5 67 8-80 12-78 (92)
58 cd05865 Ig1_NCAM-1 First immun 99.0 2.3E-09 5E-14 66.8 8.0 69 8-80 12-82 (96)
59 cd05730 Ig3_NCAM-1_like Third 99.0 6.3E-10 1.4E-14 68.9 5.5 67 7-80 14-80 (95)
60 KOG4194|consensus 99.0 3.7E-09 8E-14 83.5 10.7 128 10-137 517-706 (873)
61 cd05874 Ig6_NrCAM Sixth immuno 99.0 1.8E-09 4E-14 64.5 7.2 60 15-80 2-65 (77)
62 cd05764 Ig_2 Subgroup of the i 99.0 1.4E-09 2.9E-14 64.3 6.4 61 12-80 2-62 (74)
63 cd05731 Ig3_L1-CAM_like Third 99.0 7.9E-10 1.7E-14 64.6 5.3 57 15-80 2-58 (71)
64 cd05762 Ig8_MLCK Eighth immuno 99.0 1.4E-09 3E-14 68.0 6.7 66 9-80 13-78 (98)
65 cd05859 Ig4_PDGFR-alpha Fourth 99.0 3.5E-10 7.6E-15 71.1 3.9 71 8-80 15-87 (101)
66 cd05728 Ig4_Contactin-2-like F 99.0 7.4E-10 1.6E-14 67.3 5.0 63 7-79 10-72 (85)
67 cd05854 Ig6_Contactin-2 Sixth 99.0 2.3E-09 5E-14 65.2 7.2 66 13-80 2-69 (85)
68 cd05901 Ig_Versican Immunoglob 99.0 2E-09 4.4E-14 69.0 7.1 66 14-79 27-100 (117)
69 cd05747 Ig5_Titin_like M5, fif 99.0 1.6E-09 3.6E-14 66.7 6.6 68 7-80 14-81 (92)
70 cd05875 Ig6_hNeurofascin_like 99.0 2.8E-09 6.1E-14 63.6 7.4 60 15-80 2-65 (77)
71 cd05878 Ig_Aggrecan_like Immun 99.0 2.1E-09 4.6E-14 68.5 7.0 66 14-79 26-93 (110)
72 cd04968 Ig3_Contactin_like Thi 99.0 2.2E-09 4.7E-14 65.5 6.8 63 8-80 13-75 (88)
73 KOG4222|consensus 99.0 1.2E-09 2.6E-14 90.6 7.2 110 22-138 158-316 (1281)
74 cd05724 Ig2_Robo Second immuno 99.0 2.7E-09 5.9E-14 64.6 7.1 65 8-80 8-73 (86)
75 cd05858 Ig3_FGFR-2 Third immun 99.0 3.1E-09 6.7E-14 65.2 7.1 69 12-80 2-77 (90)
76 cd05735 Ig8_DSCAM Eight immuno 99.0 6.2E-09 1.4E-13 63.7 8.2 67 12-80 2-69 (88)
77 cd05886 Ig1_Nectin-1_like Firs 99.0 3.6E-09 7.8E-14 66.2 7.1 66 12-79 16-84 (99)
78 cd07690 Ig1_CD4 First immunogl 99.0 2.2E-09 4.8E-14 66.5 6.1 73 8-80 4-87 (94)
79 cd05895 Ig_Pro_neuregulin-1 Im 99.0 7E-09 1.5E-13 61.5 7.9 64 14-80 1-66 (76)
80 cd05722 Ig1_Neogenin First imm 98.9 4.2E-09 9.1E-14 65.2 6.9 65 9-80 12-81 (95)
81 cd05756 Ig1_IL1R_like First im 98.9 1.9E-09 4.2E-14 66.8 5.0 65 8-79 11-81 (94)
82 cd05727 Ig2_Contactin-2-like S 98.9 4.5E-09 9.8E-14 65.3 6.4 67 9-81 16-83 (96)
83 cd05773 Ig8_hNephrin_like Eigh 98.9 8.5E-09 1.8E-13 65.6 7.8 70 9-80 21-92 (109)
84 cd04970 Ig6_Contactin_like Six 98.9 5.3E-09 1.1E-13 63.4 6.5 65 13-79 2-68 (85)
85 cd05900 Ig_Aggrecan Immunoglob 98.9 5.3E-09 1.2E-13 66.9 6.6 41 38-78 54-94 (112)
86 cd04967 Ig1_Contactin First Ig 98.9 5.2E-09 1.1E-13 64.3 6.2 63 10-80 18-81 (91)
87 cd05891 Ig_M-protein_C C-termi 98.9 4.6E-09 1E-13 64.8 5.9 70 5-79 10-79 (92)
88 cd05882 Ig1_Necl-1 First (N-te 98.9 7.8E-09 1.7E-13 64.2 7.0 71 7-79 8-83 (95)
89 cd05729 Ig2_FGFR_like Second i 98.9 6.6E-09 1.4E-13 62.5 6.3 70 6-80 4-73 (85)
90 cd05739 Ig3_RPTP_IIa_LAR_like 98.9 8E-09 1.7E-13 60.4 6.3 57 12-80 2-58 (69)
91 PF07679 I-set: Immunoglobulin 98.9 1.1E-08 2.5E-13 62.2 7.0 67 8-80 12-78 (90)
92 cd05775 Ig_SLAM-CD84_like_N N- 98.9 7.6E-09 1.6E-13 64.5 6.0 63 12-79 17-82 (97)
93 cd05888 Ig1_Nectin-4_like Frst 98.9 2.4E-08 5.2E-13 62.5 8.3 64 14-79 17-85 (100)
94 cd04973 Ig1_FGFR First immunog 98.9 1.9E-08 4.2E-13 60.2 7.2 61 8-79 6-66 (79)
95 cd04977 Ig1_NCAM-1_like First 98.8 2.6E-08 5.7E-13 61.4 7.8 68 8-80 12-79 (92)
96 cd05879 Ig_P0 Immunoglobulin ( 98.8 2.7E-08 5.9E-13 64.0 8.1 40 39-79 62-101 (116)
97 cd07701 Ig1_Necl-3 First (N-te 98.8 1.9E-08 4E-13 62.5 7.0 71 7-79 8-83 (95)
98 cd05853 Ig6_Contactin-4 Sixth 98.8 1.3E-08 2.9E-13 61.9 6.1 65 13-80 2-69 (85)
99 cd05889 Ig1_DNAM-1_like First 98.8 3.5E-08 7.6E-13 61.4 7.8 64 13-78 14-80 (96)
100 cd05741 Ig_CEACAM_D1_like Firs 98.8 2.2E-08 4.8E-13 61.4 6.9 35 39-79 44-78 (92)
101 cd05845 Ig2_L1-CAM_like Second 98.8 1.6E-08 3.5E-13 62.7 6.0 66 8-81 15-82 (95)
102 cd05887 Ig1_Nectin-3_like Firs 98.8 3.2E-08 7E-13 61.5 7.2 65 13-79 14-81 (96)
103 PF00047 ig: Immunoglobulin do 98.8 2E-08 4.3E-13 57.4 5.8 62 12-77 2-64 (64)
104 cd05873 Ig_Sema4D_like Immunog 98.8 2E-08 4.3E-13 61.3 5.8 61 9-79 9-69 (87)
105 cd05758 Ig5_KIRREL3-like Fifth 98.8 5.9E-08 1.3E-12 60.4 7.8 72 8-80 13-87 (98)
106 cd07693 Ig1_Robo First immunog 98.8 3.5E-08 7.5E-13 61.0 6.2 68 7-80 12-86 (100)
107 cd05718 Ig1_PVR_like First imm 98.7 8.8E-08 1.9E-12 59.4 8.0 65 13-79 16-83 (98)
108 cd05880 Ig_EVA1 Immunoglobulin 98.7 4.9E-08 1.1E-12 62.7 6.5 42 38-80 60-101 (115)
109 cd05742 Ig1_VEGFR_like First i 98.7 5.8E-08 1.3E-12 58.7 6.5 67 12-80 2-71 (84)
110 smart00408 IGc2 Immunoglobulin 98.7 7E-08 1.5E-12 54.0 6.4 59 11-79 2-60 (63)
111 cd05846 Ig1_MRC-OX-2_like Firs 98.7 8.7E-08 1.9E-12 59.6 7.0 64 14-79 16-82 (97)
112 cd05861 Ig1_PDGFR-alphabeta Fr 98.7 1.5E-07 3.3E-12 57.0 7.8 65 12-80 2-68 (84)
113 cd05774 Ig_CEACAM_D1 First imm 98.7 1.2E-07 2.6E-12 59.9 7.4 36 39-80 57-92 (105)
114 cd05757 Ig2_IL1R_like Second i 98.7 2E-08 4.4E-13 62.0 3.8 62 8-79 7-73 (92)
115 cd04979 Ig_Semaphorin_C Immuno 98.7 1.2E-07 2.5E-12 58.0 6.5 63 9-79 9-72 (89)
116 cd05715 Ig_P0-like Immunoglobu 98.6 1.8E-07 3.9E-12 60.0 7.3 41 39-80 62-102 (116)
117 cd05717 Ig1_Necl-1-3_like Firs 98.6 2.5E-07 5.5E-12 57.2 7.5 71 7-79 8-83 (95)
118 cd05712 Ig_Siglec_N Immunoglob 98.6 2E-07 4.2E-12 60.2 7.2 39 40-79 63-101 (119)
119 cd04983 IgV_TCR_alpha_like Imm 98.6 1.6E-07 3.4E-12 59.4 6.6 73 6-79 8-91 (109)
120 PHA02826 IL-1 receptor-like pr 98.6 1.3E-07 2.8E-12 67.7 6.6 63 9-79 142-209 (227)
121 cd05745 Ig3_Peroxidasin Third 98.6 1.2E-07 2.5E-12 56.0 5.2 26 104-129 39-64 (74)
122 cd05749 Ig2_Tyro3_like Second 98.6 2.1E-07 4.6E-12 56.1 6.2 59 8-80 10-69 (81)
123 cd05852 Ig5_Contactin-1 Fifth 98.6 1.6E-07 3.4E-12 55.5 5.5 25 105-129 39-63 (73)
124 cd05714 Ig_CSPGs_LP Immunoglob 98.6 2.4E-07 5.2E-12 58.4 6.8 38 40-79 52-89 (106)
125 cd00099 IgV Immunoglobulin var 98.6 2.8E-07 6.1E-12 57.7 6.3 70 9-79 4-88 (105)
126 cd05885 Ig2_Necl-4 Second immu 98.6 3.8E-07 8.2E-12 54.8 6.4 60 14-81 2-66 (80)
127 cd05871 Ig_Semaphorin_classIII 98.5 3.8E-07 8.3E-12 56.1 6.4 63 9-79 9-74 (91)
128 cd05851 Ig3_Contactin-1 Third 98.5 3.6E-07 7.7E-12 55.8 5.8 26 104-129 52-77 (88)
129 cd04969 Ig5_Contactin_like Fif 98.5 3E-07 6.4E-12 54.0 5.2 25 105-129 39-63 (73)
130 cd05754 Ig3_Perlecan_like Thir 98.5 4.2E-07 9.1E-12 55.0 6.0 61 8-80 13-74 (85)
131 cd05726 Ig4_Robo Fhird immunog 98.5 4.2E-07 9.1E-12 55.6 5.9 36 105-140 47-87 (90)
132 cd05867 Ig4_L1-CAM_like Fourth 98.5 4.2E-07 9.1E-12 53.9 5.6 25 105-129 41-65 (76)
133 cd05881 Ig1_Necl-2 First (N-te 98.5 9E-07 1.9E-11 54.9 7.3 70 7-78 8-82 (95)
134 cd05753 Ig2_FcgammaR_like Seco 98.5 4.9E-07 1.1E-11 54.6 5.8 60 7-80 10-70 (83)
135 cd05752 Ig1_FcgammaR_like Frst 98.5 3.4E-07 7.4E-12 54.7 4.7 55 8-79 12-67 (78)
136 cd05730 Ig3_NCAM-1_like Third 98.5 7.5E-07 1.6E-11 55.0 6.2 27 103-129 56-82 (95)
137 cd04978 Ig4_L1-NrCAM_like Four 98.4 6.4E-07 1.4E-11 52.8 5.5 26 104-129 40-65 (76)
138 cd04968 Ig3_Contactin_like Thi 98.4 9.3E-07 2E-11 53.8 5.9 26 104-129 52-77 (88)
139 cd05762 Ig8_MLCK Eighth immuno 98.4 9.6E-07 2.1E-11 55.1 5.9 26 104-129 55-80 (98)
140 cd05759 Ig2_KIRREL3-like Secon 98.4 1.1E-06 2.4E-11 52.7 5.9 67 13-81 1-69 (82)
141 cd05897 Ig2_IL1R2_like Second 98.4 6.3E-07 1.4E-11 55.6 4.8 64 10-80 9-77 (95)
142 cd05740 Ig_CEACAM_D4 Fourth im 98.4 1.1E-06 2.3E-11 54.1 5.7 27 103-129 53-79 (91)
143 cd05764 Ig_2 Subgroup of the i 98.4 1.2E-06 2.6E-11 51.4 5.4 25 105-129 40-64 (74)
144 cd05894 Ig_C5_MyBP-C C5 immuno 98.4 1.1E-06 2.4E-11 53.4 5.3 25 105-129 52-76 (86)
145 cd05877 Ig_LP_like Immunoglobu 98.4 2.1E-06 4.6E-11 54.0 6.7 38 40-79 52-89 (106)
146 PHA02987 Ig domain OX-2-like p 98.4 1.4E-06 3E-11 59.9 6.0 70 8-79 27-106 (189)
147 cd05876 Ig3_L1-CAM Third immun 98.4 1.1E-06 2.5E-11 51.3 4.9 27 103-129 34-60 (71)
148 smart00406 IGv Immunoglobulin 98.3 2.1E-06 4.5E-11 50.9 6.1 36 41-77 46-81 (81)
149 cd04982 IgV_TCR_gamma Immunogl 98.3 1.3E-06 2.9E-11 55.8 5.4 73 6-79 8-98 (116)
150 cd05743 Ig_Perlecan_D2_like Im 98.3 1.1E-06 2.3E-11 52.4 4.6 25 105-129 42-66 (78)
151 cd05853 Ig6_Contactin-4 Sixth 98.3 4.2E-07 9.2E-12 55.3 2.8 33 104-136 46-83 (85)
152 cd04984 IgV_L_lambda Immunoglo 98.3 3.7E-06 8.1E-11 52.2 7.1 68 8-78 3-83 (98)
153 cd05716 Ig_pIgR Immunoglobulin 98.3 1.6E-06 3.5E-11 53.8 5.4 70 8-78 4-84 (98)
154 cd05868 Ig4_NrCAM Fourth immun 98.3 1.7E-06 3.6E-11 51.3 5.2 27 103-129 39-65 (76)
155 cd05899 IgV_TCR_beta Immunoglo 98.3 2.2E-06 4.8E-11 54.4 6.0 71 6-79 8-93 (110)
156 cd05723 Ig4_Neogenin Fourth im 98.3 1.5E-06 3.2E-11 50.8 4.6 24 106-129 38-61 (71)
157 PF07686 V-set: Immunoglobulin 98.3 2E-06 4.4E-11 54.0 5.5 70 9-79 14-100 (114)
158 cd05760 Ig2_PTK7 Second immuno 98.3 3.1E-06 6.8E-11 50.2 5.9 26 104-129 37-62 (77)
159 cd05746 Ig4_Peroxidasin Fourth 98.3 1.6E-06 3.5E-11 50.4 4.5 26 104-129 35-60 (69)
160 cd05765 Ig_3 Subgroup of the i 98.3 2.4E-06 5.3E-11 50.9 5.4 25 105-129 47-71 (81)
161 cd05728 Ig4_Contactin-2-like F 98.3 1.6E-06 3.4E-11 52.5 4.6 25 105-129 51-75 (85)
162 cd07706 IgV_TCR_delta Immunogl 98.3 2.3E-06 5E-11 54.8 5.5 72 7-79 10-93 (116)
163 cd05724 Ig2_Robo Second immuno 98.3 2.7E-06 6E-11 51.2 5.5 26 105-130 51-76 (86)
164 cd05862 Ig1_VEGFR First immuno 98.3 6E-06 1.3E-10 50.2 6.9 66 12-79 2-71 (86)
165 PF13927 Ig_3: Immunoglobulin 98.3 2.8E-06 6.2E-11 49.3 5.3 57 14-79 18-75 (75)
166 cd05863 Ig2_VEGFR-3 Second imm 98.2 1.3E-06 2.7E-11 50.8 3.4 27 103-129 29-55 (67)
167 cd04980 IgV_L_kappa Immunoglob 98.2 3.6E-06 7.8E-11 53.0 5.6 71 5-78 9-91 (106)
168 cd05735 Ig8_DSCAM Eight immuno 98.2 1.6E-06 3.5E-11 52.9 3.8 25 105-129 47-71 (88)
169 cd05731 Ig3_L1-CAM_like Third 98.2 2.2E-06 4.8E-11 49.7 4.2 26 104-129 35-60 (71)
170 cd05737 Ig_Myomesin_like_C C-t 98.2 3.5E-06 7.6E-11 51.7 5.2 25 105-129 58-82 (92)
171 cd05856 Ig2_FGFRL1-like Second 98.2 2.8E-06 6E-11 50.6 4.6 25 105-129 48-72 (82)
172 cd05896 Ig1_IL1RAPL-1_like Fir 98.2 5.9E-06 1.3E-10 51.8 6.1 47 26-79 41-91 (104)
173 cd05892 Ig_Myotilin_C C-termin 98.2 1.2E-06 2.5E-11 52.0 2.8 24 106-129 42-65 (75)
174 cd04973 Ig1_FGFR First immunog 98.2 3.5E-06 7.7E-11 50.3 4.8 26 104-129 44-69 (79)
175 cd05763 Ig_1 Subgroup of the i 98.2 2.3E-06 4.9E-11 50.5 3.9 27 103-129 38-64 (75)
176 cd05725 Ig3_Robo Third immunog 98.2 1.4E-06 3.1E-11 50.5 3.0 26 104-129 34-59 (69)
177 cd05854 Ig6_Contactin-2 Sixth 98.2 1.9E-06 4.1E-11 52.3 3.6 25 105-129 47-71 (85)
178 PHA03376 BARF1; Provisional 98.2 6.8E-06 1.5E-10 56.6 6.6 64 13-79 42-108 (221)
179 cd05857 Ig2_FGFR Second immuno 98.2 7E-06 1.5E-10 49.4 6.0 25 105-129 51-75 (85)
180 smart00409 IG Immunoglobulin. 98.2 1.1E-05 2.5E-10 47.3 6.8 65 8-78 6-71 (86)
181 smart00410 IG_like Immunoglobu 98.2 1.1E-05 2.5E-10 47.3 6.8 65 8-78 6-71 (86)
182 cd05866 Ig1_NCAM-2 First immun 98.2 4.2E-06 9.1E-11 51.6 4.9 25 105-129 56-80 (92)
183 cd04971 Ig_TrKABC_d5 Fifth dom 98.2 2.8E-06 6.1E-11 51.1 3.9 24 106-129 47-70 (81)
184 cd04972 Ig_TrkABC_d4 Fourth do 98.2 4.9E-06 1.1E-10 50.8 4.9 25 105-129 56-80 (90)
185 cd04974 Ig3_FGFR Third immunog 98.1 2.4E-06 5.2E-11 52.3 3.3 25 105-129 55-79 (90)
186 cd05771 IgC_Tapasin_R Tapasin- 98.1 9.1E-06 2E-10 53.7 6.4 22 58-79 1-22 (139)
187 cd05891 Ig_M-protein_C C-termi 98.1 1.4E-05 3E-10 49.1 6.7 24 106-129 59-82 (92)
188 cd05893 Ig_Palladin_C C-termin 98.1 1.8E-06 4E-11 51.2 2.5 24 106-129 42-65 (75)
189 cd05864 Ig2_VEGFR-2 Second imm 98.1 1.8E-06 3.8E-11 50.6 2.4 27 103-129 32-58 (70)
190 cd04970 Ig6_Contactin_like Six 98.1 2.5E-06 5.4E-11 51.5 3.1 26 104-129 46-71 (85)
191 cd05898 Ig5_KIRREL3 Fifth immu 98.1 2.2E-05 4.7E-10 49.0 7.4 73 7-80 12-87 (98)
192 cd05858 Ig3_FGFR-2 Third immun 98.1 1.6E-06 3.6E-11 53.0 2.3 25 105-129 55-79 (90)
193 cd05855 Ig_TrkB_d5 Fifth domai 98.1 4.8E-06 1E-10 49.9 4.2 24 106-129 45-68 (79)
194 PF07679 I-set: Immunoglobulin 98.1 6.3E-06 1.4E-10 49.9 4.7 26 104-129 55-80 (90)
195 cd05751 Ig1_LILRB1_like First 98.1 1.2E-05 2.5E-10 49.4 5.9 64 7-80 12-75 (91)
196 cd05748 Ig_Titin_like Immunogl 98.1 3.3E-06 7.1E-11 49.6 3.3 26 104-129 39-64 (74)
197 cd05747 Ig5_Titin_like M5, fif 98.1 9.8E-06 2.1E-10 49.7 5.5 25 105-129 59-83 (92)
198 cd04976 Ig2_VEGFR Second immun 98.1 3.9E-06 8.5E-11 49.1 3.3 27 103-129 33-59 (71)
199 cd05753 Ig2_FcgammaR_like Seco 98.1 7E-06 1.5E-10 49.6 4.3 26 104-129 47-72 (83)
200 cd05848 Ig1_Contactin-5 First 98.1 1.4E-05 3.1E-10 49.3 5.8 25 105-129 58-83 (94)
201 cd05744 Ig_Myotilin_C_like Imm 98.1 4.1E-06 8.8E-11 49.5 3.1 24 106-129 42-65 (75)
202 cd04975 Ig4_SCFR_like Fourth i 98.1 3.7E-06 8.1E-11 52.7 3.0 25 105-129 65-89 (101)
203 cd05752 Ig1_FcgammaR_like Frst 98.1 1E-05 2.2E-10 48.3 4.7 25 103-128 45-69 (78)
204 cd05865 Ig1_NCAM-1 First immun 98.0 5.3E-06 1.1E-10 51.5 3.5 25 105-129 60-84 (96)
205 cd05738 Ig2_RPTP_IIa_LAR_like 98.0 8.4E-06 1.8E-10 48.0 3.9 26 105-130 38-63 (74)
206 cd04977 Ig1_NCAM-1_like First 98.0 5.8E-06 1.2E-10 50.9 3.1 25 105-129 57-81 (92)
207 cd05736 Ig2_Follistatin_like S 98.0 1.3E-05 2.8E-10 47.3 4.5 27 103-129 37-63 (76)
208 cd00096 Ig Immunoglobulin doma 98.0 3.5E-05 7.6E-10 43.0 6.1 63 15-79 2-64 (74)
209 smart00408 IGc2 Immunoglobulin 98.0 3.4E-05 7.3E-10 42.7 5.9 27 103-129 37-63 (63)
210 cd05742 Ig1_VEGFR_like First i 98.0 7.3E-06 1.6E-10 49.4 3.1 25 105-129 49-73 (84)
211 cd05870 Ig5_NCAM-2 Fifth immun 98.0 7.1E-06 1.5E-10 50.9 3.1 25 105-129 64-88 (98)
212 cd05754 Ig3_Perlecan_like Thir 98.0 1.2E-05 2.7E-10 48.4 4.1 26 104-129 51-76 (85)
213 cd05850 Ig1_Contactin-2 First 98.0 3.1E-05 6.8E-10 47.7 5.9 26 105-130 58-84 (94)
214 cd05732 Ig5_NCAM-1_like Fifth 98.0 8E-06 1.7E-10 50.3 3.2 26 105-130 62-87 (96)
215 cd05895 Ig_Pro_neuregulin-1 Im 97.9 1.7E-05 3.8E-10 46.7 4.3 27 105-131 44-70 (76)
216 cd05859 Ig4_PDGFR-alpha Fourth 97.9 7.9E-06 1.7E-10 51.2 2.8 25 105-129 65-89 (101)
217 cd05869 Ig5_NCAM-1 Fifth immun 97.9 9.8E-06 2.1E-10 50.2 3.2 26 105-130 63-88 (97)
218 cd05734 Ig7_DSCAM Seventh immu 97.9 1.2E-05 2.7E-10 47.8 3.5 25 105-129 44-68 (79)
219 cd05750 Ig_Pro_neuregulin Immu 97.9 1.3E-05 2.8E-10 46.9 3.2 26 105-130 43-68 (75)
220 cd05773 Ig8_hNephrin_like Eigh 97.9 3.4E-05 7.4E-10 48.9 5.4 25 105-129 69-94 (109)
221 cd05757 Ig2_IL1R_like Second i 97.9 3.5E-05 7.7E-10 47.5 5.3 28 103-130 50-77 (92)
222 cd07700 IgV_CD8_beta Immunoglo 97.9 4.6E-05 1E-09 48.1 5.9 70 8-78 3-92 (107)
223 cd05739 Ig3_RPTP_IIa_LAR_like 97.9 4.6E-05 1E-09 44.3 5.5 22 106-129 39-60 (69)
224 cd05727 Ig2_Contactin-2-like S 97.9 1.9E-05 4.2E-10 49.0 4.0 25 105-129 60-84 (96)
225 cd05862 Ig1_VEGFR First immuno 97.9 1.6E-05 3.4E-10 48.4 3.5 25 105-129 50-74 (86)
226 cd05720 Ig_CD8_alpha Immunoglo 97.9 7.3E-05 1.6E-09 47.0 6.7 23 56-78 67-89 (104)
227 PF13895 Ig_2: Immunoglobulin 97.9 2.1E-05 4.6E-10 46.2 4.0 55 9-79 12-66 (80)
228 cd05849 Ig1_Contactin-1 First 97.9 3.4E-05 7.4E-10 47.5 4.9 25 105-129 57-82 (93)
229 cd05872 Ig_Sema4B_like Immunog 97.9 3.8E-05 8.3E-10 46.6 4.9 59 9-78 9-67 (85)
230 cd04967 Ig1_Contactin First Ig 97.9 6.7E-05 1.5E-09 45.8 6.0 26 105-130 58-84 (91)
231 PF00047 ig: Immunoglobulin do 97.9 4.5E-05 9.7E-10 43.2 4.8 18 107-124 47-64 (64)
232 cd05722 Ig1_Neogenin First imm 97.8 6.1E-05 1.3E-09 46.3 5.5 24 106-129 55-84 (95)
233 cd05756 Ig1_IL1R_like First im 97.8 2.3E-05 4.9E-10 48.5 3.2 26 104-129 59-84 (94)
234 cd05871 Ig_Semaphorin_classIII 97.8 7E-05 1.5E-09 46.0 5.0 25 105-129 53-78 (91)
235 cd07702 Ig2_VEGFR-1 Second imm 97.8 1.9E-05 4.2E-10 46.4 2.3 26 104-129 35-60 (72)
236 cd05861 Ig1_PDGFR-alphabeta Fr 97.7 4.6E-05 9.9E-10 46.0 3.7 25 105-129 46-70 (84)
237 cd00098 IgC Immunoglobulin Con 97.7 6.2E-05 1.3E-09 46.1 4.3 70 10-80 12-84 (95)
238 cd05874 Ig6_NrCAM Sixth immuno 97.7 0.00015 3.4E-09 43.0 5.7 26 104-129 38-67 (77)
239 cd04979 Ig_Semaphorin_C Immuno 97.7 0.00011 2.5E-09 44.6 4.9 24 106-129 52-75 (89)
240 cd05873 Ig_Sema4D_like Immunog 97.7 7.7E-05 1.7E-09 45.5 4.1 24 105-128 48-71 (87)
241 cd04981 IgV_H Immunoglobulin ( 97.7 0.00019 4.2E-09 46.1 6.0 36 42-78 61-96 (117)
242 cd05774 Ig_CEACAM_D1 First imm 97.7 0.00017 3.6E-09 45.6 5.5 27 102-129 68-94 (105)
243 cd07693 Ig1_Robo First immunog 97.7 0.00019 4.2E-09 44.0 5.8 18 112-129 71-88 (100)
244 cd05733 Ig6_L1-CAM_like Sixth 97.6 9.4E-05 2E-09 43.8 4.1 25 105-129 39-67 (77)
245 cd05897 Ig2_IL1R2_like Second 97.6 0.00017 3.6E-09 44.7 5.1 26 104-129 54-79 (95)
246 cd05711 Ig_FcalphaRI Immunoglo 97.6 0.0003 6.6E-09 43.4 5.9 66 7-79 11-76 (94)
247 cd05882 Ig1_Necl-1 First (N-te 97.6 0.00016 3.4E-09 44.8 4.4 24 105-128 62-85 (95)
248 cd05883 Ig2_Necl-2 Second immu 97.5 0.00042 9.2E-09 41.7 6.0 65 14-81 2-67 (82)
249 cd05741 Ig_CEACAM_D1_like Firs 97.5 0.00029 6.3E-09 42.8 4.9 25 105-129 57-81 (92)
250 cd05886 Ig1_Nectin-1_like Firs 97.5 0.00019 4.2E-09 44.8 4.0 26 104-129 62-88 (99)
251 cd05729 Ig2_FGFR_like Second i 97.5 0.00032 7E-09 41.7 4.8 24 106-129 52-75 (85)
252 cd05758 Ig5_KIRREL3-like Fifth 97.5 0.00023 4.9E-09 44.1 4.1 24 106-129 65-89 (98)
253 cd05845 Ig2_L1-CAM_like Second 97.4 0.00023 4.9E-09 44.1 4.0 25 105-129 58-83 (95)
254 cd05898 Ig5_KIRREL3 Fifth immu 97.4 0.00051 1.1E-08 42.8 5.4 66 64-129 12-89 (98)
255 cd07690 Ig1_CD4 First immunogl 97.4 8.9E-05 1.9E-09 45.9 1.8 25 105-129 65-89 (94)
256 cd05888 Ig1_Nectin-4_like Frst 97.4 0.00021 4.6E-09 44.5 3.5 26 104-129 63-89 (100)
257 cd05860 Ig4_SCFR Fourth immuno 97.4 0.00065 1.4E-08 42.5 5.6 74 6-80 13-87 (101)
258 cd05713 Ig_MOG_like Immunoglob 97.4 0.00019 4E-09 44.5 3.3 25 105-129 65-89 (100)
259 cd05761 Ig2_Necl-1-4_like Seco 97.4 0.00093 2E-08 40.0 6.2 65 14-81 2-68 (82)
260 cd05714 Ig_CSPGs_LP Immunoglob 97.4 0.00021 4.5E-09 44.9 3.4 26 104-129 67-92 (106)
261 cd05875 Ig6_hNeurofascin_like 97.4 0.00028 6E-09 41.8 3.7 26 104-129 38-67 (77)
262 cd05751 Ig1_LILRB1_like First 97.3 0.00036 7.8E-09 42.7 4.0 22 106-127 54-75 (91)
263 cd05877 Ig_LP_like Immunoglobu 97.3 0.00026 5.6E-09 44.4 3.3 26 104-129 67-92 (106)
264 cd05749 Ig2_Tyro3_like Second 97.3 0.00057 1.2E-08 41.0 4.5 24 104-129 48-71 (81)
265 cd05884 Ig2_Necl-3 Second immu 97.3 0.002 4.2E-08 38.8 6.8 66 14-81 2-69 (83)
266 PF13895 Ig_2: Immunoglobulin 97.2 0.00079 1.7E-08 39.3 4.4 24 106-129 46-69 (80)
267 cd05900 Ig_Aggrecan Immunoglob 97.2 0.00064 1.4E-08 43.4 3.9 27 103-129 72-98 (112)
268 cd07701 Ig1_Necl-3 First (N-te 97.1 0.00046 9.9E-09 42.6 3.0 25 105-129 62-86 (95)
269 PF13927 Ig_3: Immunoglobulin 97.1 0.00037 8.1E-09 40.1 2.2 23 104-126 53-75 (75)
270 cd05846 Ig1_MRC-OX-2_like Firs 97.1 0.0012 2.5E-08 40.8 4.5 24 104-127 60-83 (97)
271 smart00407 IGc1 Immunoglobulin 97.1 0.003 6.5E-08 37.1 6.0 67 13-80 1-70 (75)
272 cd05717 Ig1_Necl-1-3_like Firs 97.1 0.00063 1.4E-08 41.8 3.2 25 105-129 62-86 (95)
273 cd07705 Ig2_Necl-1 Second immu 97.1 0.0041 8.9E-08 37.4 6.6 64 14-81 2-69 (83)
274 cd05879 Ig_P0 Immunoglobulin ( 97.0 0.00068 1.5E-08 43.6 3.0 26 104-129 79-104 (116)
275 PF11465 Receptor_2B4: Natural 97.0 0.002 4.3E-08 40.5 4.8 65 10-79 23-92 (108)
276 cd05718 Ig1_PVR_like First imm 97.0 0.00093 2E-08 41.1 3.4 26 104-129 61-87 (98)
277 cd05878 Ig_Aggrecan_like Immun 97.0 0.0011 2.4E-08 42.1 3.6 25 105-129 72-96 (110)
278 cd05901 Ig_Versican Immunoglob 96.9 0.0016 3.4E-08 41.9 3.8 26 104-129 78-103 (117)
279 cd05880 Ig_EVA1 Immunoglobulin 96.9 0.00094 2E-08 42.7 2.8 26 104-129 78-103 (115)
280 cd05902 Ig_Neurocan Immunoglob 96.9 0.0011 2.3E-08 42.3 2.8 26 104-129 71-96 (110)
281 cd05775 Ig_SLAM-CD84_like_N N- 96.8 0.0012 2.7E-08 40.8 3.0 25 105-129 61-85 (97)
282 cd05721 IgV_CTLA-4 Immunoglobu 96.8 0.0087 1.9E-07 38.3 6.7 39 42-81 59-97 (115)
283 cd05715 Ig_P0-like Immunoglobu 96.8 0.0015 3.4E-08 41.6 3.0 25 105-129 80-104 (116)
284 KOG3515|consensus 96.7 0.0061 1.3E-07 50.4 6.8 109 9-128 20-186 (741)
285 cd05887 Ig1_Nectin-3_like Firs 96.7 0.0021 4.5E-08 39.9 3.1 26 104-129 59-85 (96)
286 cd05889 Ig1_DNAM-1_like First 96.7 0.0023 5E-08 39.7 3.2 26 104-129 59-85 (96)
287 cd05896 Ig1_IL1RAPL-1_like Fir 96.6 0.0025 5.5E-08 40.0 3.1 28 102-129 67-94 (104)
288 smart00409 IG Immunoglobulin. 96.6 0.0035 7.5E-08 36.4 3.7 25 105-129 51-75 (86)
289 smart00410 IG_like Immunoglobu 96.6 0.0035 7.5E-08 36.4 3.7 25 105-129 51-75 (86)
290 cd00099 IgV Immunoglobulin var 96.6 0.0015 3.2E-08 40.6 2.1 26 104-129 66-91 (105)
291 cd04983 IgV_TCR_alpha_like Imm 96.5 0.005 1.1E-07 38.5 4.2 26 104-129 69-94 (109)
292 cd05755 Ig2_ICAM-1_like Second 96.5 0.016 3.4E-07 36.3 6.2 68 9-81 14-85 (100)
293 cd05766 IgC_MHC_II_beta Class 96.5 0.014 3.1E-07 35.9 6.0 67 8-80 11-82 (94)
294 PHA02633 hypothetical protein; 96.5 0.0053 1.1E-07 34.7 3.6 36 103-138 16-56 (63)
295 cd05770 IgC_beta2m Class I maj 96.5 0.012 2.6E-07 36.2 5.4 65 9-80 13-82 (93)
296 cd05771 IgC_Tapasin_R Tapasin- 96.4 0.029 6.3E-07 36.8 7.6 70 10-80 52-130 (139)
297 cd07703 Ig2_Nectin-2_like Seco 96.4 0.016 3.5E-07 35.9 5.6 60 13-80 17-81 (95)
298 cd05881 Ig1_Necl-2 First (N-te 96.4 0.004 8.7E-08 38.5 2.9 23 106-128 63-85 (95)
299 PHA02633 hypothetical protein; 96.4 0.0037 8E-08 35.3 2.5 24 56-79 16-39 (63)
300 cd05872 Ig_Sema4B_like Immunog 96.3 0.012 2.6E-07 35.6 4.8 23 106-129 48-70 (85)
301 cd07698 IgC_MHC_I_alpha3 Class 96.3 0.012 2.6E-07 36.0 4.9 64 11-80 14-82 (93)
302 cd07694 Ig2_CD4 Second immunog 96.2 0.024 5.2E-07 34.5 5.7 25 103-127 49-73 (88)
303 cd07694 Ig2_CD4 Second immunog 96.2 0.031 6.7E-07 34.0 6.1 56 11-78 14-71 (88)
304 cd05899 IgV_TCR_beta Immunoglo 96.2 0.0073 1.6E-07 38.0 3.6 25 104-128 71-95 (110)
305 cd05712 Ig_Siglec_N Immunoglob 96.2 0.0082 1.8E-07 38.5 3.9 33 105-137 80-112 (119)
306 cd05767 IgC_MHC_II_alpha Class 96.2 0.02 4.3E-07 35.3 5.4 66 9-80 13-83 (94)
307 PF07686 V-set: Immunoglobulin 96.1 0.0046 1E-07 38.4 2.1 23 105-127 79-101 (114)
308 cd07704 Ig2_Nectin-3-4_like Se 96.0 0.023 4.9E-07 35.3 5.1 66 7-80 12-83 (97)
309 cd05860 Ig4_SCFR Fourth immuno 95.9 0.012 2.5E-07 36.9 3.4 25 105-129 65-89 (101)
310 PF07354 Sp38: Zona-pellucida- 95.9 0.013 2.8E-07 42.6 4.0 50 23-80 10-59 (271)
311 cd05719 Ig2_PVR_like Second im 95.9 0.039 8.5E-07 34.1 5.7 61 12-80 16-81 (95)
312 cd04984 IgV_L_lambda Immunoglo 95.8 0.0084 1.8E-07 36.9 2.6 23 105-127 63-85 (98)
313 smart00406 IGv Immunoglobulin 95.8 0.0043 9.3E-08 36.3 1.1 20 105-124 62-81 (81)
314 cd04980 IgV_L_kappa Immunoglob 95.7 0.0066 1.4E-07 38.0 1.8 23 105-127 71-93 (106)
315 cd05711 Ig_FcalphaRI Immunoglo 95.7 0.026 5.6E-07 34.6 4.2 20 106-125 56-75 (94)
316 cd05716 Ig_pIgR Immunoglobulin 95.6 0.0071 1.5E-07 37.2 1.6 24 105-128 64-87 (98)
317 cd05885 Ig2_Necl-4 Second immu 95.4 0.015 3.4E-07 34.8 2.5 24 106-129 44-67 (80)
318 PF08205 C2-set_2: CD80-like C 95.4 0.077 1.7E-06 31.8 5.6 68 11-80 14-83 (89)
319 cd04982 IgV_TCR_gamma Immunogl 95.2 0.014 3.1E-07 37.0 2.1 23 105-127 77-99 (116)
320 PHA03376 BARF1; Provisional 95.1 0.03 6.5E-07 39.0 3.5 25 105-129 87-111 (221)
321 cd07699 IgC_L Immunoglobulin C 95.1 0.071 1.5E-06 33.1 5.0 69 11-80 17-88 (100)
322 cd05720 Ig_CD8_alpha Immunoglo 94.9 0.016 3.5E-07 36.2 1.7 22 105-126 69-90 (104)
323 cd07706 IgV_TCR_delta Immunogl 94.8 0.018 3.9E-07 36.6 1.7 22 105-126 72-93 (116)
324 cd00096 Ig Immunoglobulin doma 94.8 0.037 8E-07 30.1 2.8 24 105-128 43-66 (74)
325 cd07700 IgV_CD8_beta Immunoglo 94.7 0.022 4.7E-07 35.7 1.8 21 106-126 73-93 (107)
326 cd05847 IgC_CH2_IgE CH2 domain 94.7 0.12 2.7E-06 31.7 5.2 68 12-80 15-85 (94)
327 cd05772 IgC_SIRP Signal-regula 94.1 0.34 7.3E-06 30.8 6.4 67 10-80 20-91 (111)
328 PF07654 C1-set: Immunoglobuli 93.7 0.17 3.7E-06 30.0 4.3 69 8-80 5-76 (83)
329 cd07692 Ig_CD3_epsilon Immunog 93.7 0.13 2.9E-06 29.4 3.6 38 89-127 6-56 (65)
330 cd07697 IgC_TCR_gamma T cell r 93.6 0.26 5.6E-06 30.5 5.0 26 11-36 16-43 (96)
331 cd05759 Ig2_KIRREL3-like Secon 93.4 0.085 1.8E-06 31.2 2.5 24 106-129 47-70 (82)
332 PHA02987 Ig domain OX-2-like p 93.3 0.078 1.7E-06 36.8 2.5 24 103-126 83-106 (189)
333 cd07692 Ig_CD3_epsilon Immunog 93.1 0.34 7.4E-06 27.7 4.6 48 11-78 7-54 (65)
334 cd05768 IgC_CH4 CH4 domain (fo 93.1 0.49 1.1E-05 29.5 5.7 27 10-36 15-43 (102)
335 cd04981 IgV_H Immunoglobulin ( 92.7 0.077 1.7E-06 33.9 1.7 21 106-126 77-97 (117)
336 KOG3515|consensus 92.7 0.57 1.2E-05 39.2 7.0 38 106-143 459-496 (741)
337 cd05769 IgC_TCR_beta T cell re 91.6 0.7 1.5E-05 29.6 5.2 69 12-81 19-92 (115)
338 PF08204 V-set_CD47: CD47 immu 91.5 0.28 6.1E-06 32.1 3.3 33 45-80 75-107 (130)
339 cd07696 IgC_CH3 CH3 domain (th 91.0 1.6 3.5E-05 26.9 6.3 65 9-80 12-85 (96)
340 cd07691 Ig_CD3_gamma_delta Imm 90.9 0.36 7.8E-06 27.9 2.9 47 13-79 8-54 (69)
341 cd00098 IgC Immunoglobulin Con 90.6 0.29 6.3E-06 29.5 2.7 24 106-129 63-86 (95)
342 cd07689 Ig2_VCAM-1 Second immu 90.3 1.4 3E-05 27.5 5.5 71 6-79 10-84 (99)
343 cd04985 IgC_CH1 CH1 domain (fi 89.5 1.3 2.7E-05 27.3 4.8 26 11-36 16-43 (95)
344 PHA02982 hypothetical protein; 88.3 1.9 4.1E-05 30.7 5.5 67 10-79 38-121 (251)
345 PHA02982 hypothetical protein; 87.1 1.9 4.2E-05 30.7 5.0 27 103-129 98-124 (251)
346 KOG1480|consensus 87.1 0.22 4.7E-06 41.6 0.3 58 14-80 147-205 (909)
347 cd05755 Ig2_ICAM-1_like Second 84.5 2.8 6E-05 26.1 4.4 23 106-129 63-86 (100)
348 PHA02865 MHC-like TNF binding 82.6 4.1 8.9E-05 31.1 5.3 20 14-33 217-238 (338)
349 PF07354 Sp38: Zona-pellucida- 81.8 1.5 3.2E-05 32.2 2.6 25 103-128 36-60 (271)
350 cd05721 IgV_CTLA-4 Immunoglobu 75.3 2.6 5.5E-05 27.1 2.0 32 96-127 64-96 (115)
351 cd05883 Ig2_Necl-2 Second immu 74.0 3.6 7.9E-05 24.6 2.4 23 106-129 45-68 (82)
352 PHA03282 envelope glycoprotein 73.7 4.5 9.7E-05 32.2 3.3 21 57-77 123-143 (540)
353 PF11465 Receptor_2B4: Natural 72.9 5.8 0.00012 25.1 3.1 25 105-129 71-95 (108)
354 KOG4597|consensus 71.8 5.3 0.00011 31.9 3.3 59 17-79 217-278 (560)
355 PF05790 C2-set: Immunoglobuli 68.3 22 0.00049 21.0 6.5 22 104-125 42-63 (80)
356 PHA03189 UL14 tegument protein 66.0 21 0.00046 26.9 5.3 19 111-129 139-157 (348)
357 PHA02914 Immunoglobulin-like d 64.6 6 0.00013 31.0 2.3 24 105-128 346-369 (500)
358 PF01688 Herpes_gI: Alphaherpe 63.8 9.2 0.0002 26.0 2.9 24 57-80 123-146 (161)
359 cd04986 IgC_CH2 CH2 domain (se 59.8 39 0.00085 20.9 5.2 26 11-36 19-47 (99)
360 PHA03286 envelope glycoprotein 58.3 14 0.00031 29.3 3.4 24 56-79 305-328 (492)
361 PHA02914 Immunoglobulin-like d 54.8 20 0.00042 28.3 3.6 21 57-77 80-100 (500)
362 PHA03282 envelope glycoprotein 49.2 23 0.0005 28.4 3.3 23 57-79 332-354 (540)
363 PHA03290 envelope glycoprotein 45.9 29 0.00064 26.5 3.3 23 57-79 128-150 (357)
364 KOG1480|consensus 45.6 11 0.00023 32.1 1.1 25 105-129 183-207 (909)
365 COG5475 Uncharacterized small 42.8 54 0.0012 18.2 3.2 26 102-129 15-40 (60)
366 PHA03289 envelope glycoprotein 41.0 39 0.00085 25.7 3.3 24 57-80 121-144 (352)
367 KOG4597|consensus 40.7 27 0.00059 28.1 2.5 24 106-129 258-281 (560)
368 PHA03052 Hypothetical protein; 40.3 57 0.0012 18.9 3.2 29 8-36 9-40 (69)
369 PHA03292 envelope glycoprotein 39.9 40 0.00086 26.3 3.2 23 57-79 127-149 (413)
370 PHA03042 CD47-like protein; Pr 39.1 17 0.00037 27.0 1.2 22 106-128 72-93 (286)
371 PF02480 Herpes_gE: Alphaherpe 38.2 28 0.00061 27.7 2.3 24 56-79 267-290 (439)
372 PHA03283 envelope glycoprotein 34.3 54 0.0012 26.7 3.3 24 56-79 313-336 (542)
373 PF06214 SLAM: Signaling lymph 31.9 59 0.0013 20.8 2.6 30 43-77 93-122 (126)
374 PF09969 DUF2203: Uncharacteri 30.2 56 0.0012 21.0 2.4 28 13-46 90-117 (120)
375 PHA03291 envelope glycoprotein 28.8 77 0.0017 24.6 3.2 23 57-79 128-150 (401)
376 PHA03286 envelope glycoprotein 27.5 62 0.0013 25.9 2.6 22 106-127 308-329 (492)
377 PHA03240 envelope glycoprotein 27.2 28 0.0006 25.0 0.6 20 56-75 103-122 (258)
378 PHA03281 envelope glycoprotein 25.7 78 0.0017 26.1 2.9 24 56-79 473-496 (642)
379 PF02480 Herpes_gE: Alphaherpe 23.3 60 0.0013 25.9 1.9 25 103-127 267-291 (439)
380 PHA03283 envelope glycoprotein 20.9 1.1E+02 0.0024 25.0 2.9 25 103-127 313-337 (542)
No 1
>KOG3513|consensus
Probab=99.72 E-value=1.4e-16 Score=130.78 Aligned_cols=125 Identities=26% Similarity=0.356 Sum_probs=95.1
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------ 81 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------ 81 (145)
.+.+.++...|-+-|.|.|.+.|+||+.+....+..-|..+ .++.|.|++|+.+|+|.|+|.|.|.-
T Consensus 343 ~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-------~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~an 415 (1051)
T KOG3513|consen 343 ADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-------DDGTLIISNVQESDSGVYQCIAENKYGTIYAN 415 (1051)
T ss_pred ecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-------eCCEEEEEecccccCeEEEeeeecccceEeee
Confidence 46677889999999999999999999865332222222333 38999999999999999999996532
Q ss_pred ----C---CC----CC------CCCCcEEEEEEeE------------------------EecCCcEEEEcccCCCCCeee
Q psy534 82 ----R---SP----NS------HKNGTWFHLDVHG------------------------VFNDGTELRISNIRSQDIGDY 120 (145)
Q Consensus 82 ----~---~~----~~------~~~g~~~~l~c~~------------------------~~~~~~~L~i~~v~~~d~G~Y 120 (145)
+ .| ++ +..|..+.+.|.. ...+| +|.|.+++++|+|.|
T Consensus 416 A~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG-tL~I~n~t~~DaG~Y 494 (1051)
T KOG3513|consen 416 AELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG-TLEISNVTRSDAGKY 494 (1051)
T ss_pred eEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC-cEEecccCcccCcEE
Confidence 1 11 11 3359999999980 11344 999999999999999
Q ss_pred EEEEecCCC-----CcEEEEeCeeE
Q psy534 121 TCLATHVLY-----PDLLVVLGSFH 140 (145)
Q Consensus 121 ~C~a~n~~g-----~~~~v~~~~~~ 140 (145)
+|.|+|.+| .+|.|.....+
T Consensus 495 tC~A~N~~G~a~~~~~L~Vkd~tri 519 (1051)
T KOG3513|consen 495 TCVAENKLGKAESTGNLIVKDATRI 519 (1051)
T ss_pred EEEEEcccCccceEEEEEEecCceE
Confidence 999999999 67777776655
No 2
>KOG3513|consensus
Probab=99.61 E-value=1.4e-14 Score=119.26 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=92.7
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----- 82 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----- 82 (145)
+.-+..+.+-|.+.|+|.|.+.|.|.++. ...+|.... .....|.|.+++.+|+|.|+|.+.|...
T Consensus 253 a~~G~~v~LECfA~G~P~P~i~W~k~~g~----~~~~r~~~~-----~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~ 323 (1051)
T KOG3513|consen 253 ALKGQSVKLECFALGNPTPQIKWRKVDGK----PPPRRATYS-----NYGKVLKIPNVQYEDAGEYECIAENSRGSATHS 323 (1051)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEeCCCC----CCCcceeee-----ccccEEEecccCcCCCeEEEEEEecccccceee
Confidence 34466788889999999999999999864 244555542 3488999999999999999999976531
Q ss_pred -------CCC--------CCCCCcEEEEEEeE--------------------------EecCCcEEEEcccCCCCCeeeE
Q psy534 83 -------SPN--------SHKNGTWFHLDVHG--------------------------VFNDGTELRISNIRSQDIGDYT 121 (145)
Q Consensus 83 -------~~~--------~~~~g~~~~l~c~~--------------------------~~~~~~~L~i~~v~~~d~G~Y~ 121 (145)
+|. ....|+++.+.|.. .... +.|.|.+|+.+|+|.|.
T Consensus 324 ~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~-g~L~is~v~~~dsg~YQ 402 (1051)
T KOG3513|consen 324 GHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD-GTLIISNVQESDSGVYQ 402 (1051)
T ss_pred EEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeC-CEEEEEecccccCeEEE
Confidence 221 13459999999981 1123 48999999999999999
Q ss_pred EEEecCCC-----CcEEEEeC
Q psy534 122 CLATHVLY-----PDLLVVLG 137 (145)
Q Consensus 122 C~a~n~~g-----~~~~v~~~ 137 (145)
|.|+|..| +.+.|+..
T Consensus 403 C~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 403 CIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred eeeecccceEeeeeEEEEEcc
Confidence 99999999 66666554
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.47 E-value=8.8e-13 Score=94.14 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=80.3
Q ss_pred hhhccceeeEEeecCCC-----------ccEEEEecCCCCcccccccce---EEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534 8 KSIFQMLSVGDFADDED-----------IPVYIWYDSYPTHEAEEYKGR---ISRVDKESPFGMASLNLTKIRESDQGWY 73 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p-----------~p~~~w~k~~~~~~~~~~~~R---~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 73 (145)
+.++.|+.+.|-..+.| .+.+.|+|++....-.....| ..+..++....+.+|.|.+++.+|+|.|
T Consensus 34 v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y 113 (227)
T PHA02826 34 AKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIY 113 (227)
T ss_pred ecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEE
Confidence 35677888888766543 347889988642100000011 0000111112367899999999999999
Q ss_pred EEEEEEecC------------CCC--CCCCCcEEEEEEeE--------------------Ee---------cCCcEEEEc
Q psy534 74 ECKVVFLNR------------SPN--SHKNGTWFHLDVHG--------------------VF---------NDGTELRIS 110 (145)
Q Consensus 74 ~C~~~~~~~------------~~~--~~~~g~~~~l~c~~--------------------~~---------~~~~~L~i~ 110 (145)
.|.+.+... ++. ....|+.+.|.|.. .. ..+..|.|.
T Consensus 114 ~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~ 193 (227)
T PHA02826 114 ICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIK 193 (227)
T ss_pred EEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEEC
Confidence 999976431 111 12358889999961 00 123479999
Q ss_pred ccCCCCCeeeEEEEecCC-CCcEEE
Q psy534 111 NIRSQDIGDYTCLATHVL-YPDLLV 134 (145)
Q Consensus 111 ~v~~~d~G~Y~C~a~n~~-g~~~~v 134 (145)
+++.+|+|.|+|.|+... |.++.+
T Consensus 194 ~V~~~DsG~YtC~a~~~~~g~~y~~ 218 (227)
T PHA02826 194 SATHDDSGIYTCNLRFNKNSNNYNI 218 (227)
T ss_pred cCCHHhCEEEEEEEEEeECCEEEEE
Confidence 999999999999999975 444443
No 4
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.36 E-value=9.6e-12 Score=93.35 Aligned_cols=112 Identities=16% Similarity=0.312 Sum_probs=76.8
Q ss_pred cceeeEE-----eecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-----
Q psy534 12 QMLSVGD-----FADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN----- 81 (145)
Q Consensus 12 ~~~~~~~-----w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----- 81 (145)
....+.| |..+.|.|.+.|+++.. + ...|+.. ..++.|.|.+++.+|+|.|+|.+.+..
T Consensus 137 ~~~~i~C~~~~~~~~~~~~~~i~W~k~~~--~---~~~r~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~ 205 (326)
T PHA02785 137 STGEMVCPNINAFIASNVNADIIWSGHRR--L---RNKRLKQ------RTPGIITIEDVRKNDAGYYTCVLKYIYGDKTY 205 (326)
T ss_pred CcEEEECCChhhcccCCCCceEEEccCCc--c---CCcceEe------cCCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence 3344556 34567889999988642 1 1234443 235789999999999999999996521
Q ss_pred ---------C-----CC-----C--CCCCCcEEEEEEeEE------------ecC-------------------------
Q psy534 82 ---------R-----SP-----N--SHKNGTWFHLDVHGV------------FND------------------------- 103 (145)
Q Consensus 82 ---------~-----~~-----~--~~~~g~~~~l~c~~~------------~~~------------------------- 103 (145)
+ +| . ....|+.+.|.|... ..+
T Consensus 206 ~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~ 285 (326)
T PHA02785 206 NVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTD 285 (326)
T ss_pred eEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccc
Confidence 0 11 0 013488999999810 000
Q ss_pred -----CcEEEEcccCCCCCeeeEEEEecCCCCcEEE
Q psy534 104 -----GTELRISNIRSQDIGDYTCLATHVLYPDLLV 134 (145)
Q Consensus 104 -----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~v 134 (145)
...|.|.+|+.+|+|.|+|.|.|..|.+..+
T Consensus 286 ~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~~ 321 (326)
T PHA02785 286 KRRVITSRLNINPVKEEDATTFTCMAFTIPSISKTV 321 (326)
T ss_pred cceeeeEEEEECCcchhcCeeeEEEEEeccCceEee
Confidence 1268999999999999999999999855543
No 5
>KOG4221|consensus
Probab=99.35 E-value=1.7e-11 Score=101.78 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=88.1
Q ss_pred ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC--------
Q psy534 11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-------- 82 (145)
Q Consensus 11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-------- 82 (145)
+.+..+-|-..+.|.|++.|.|+..+ ...++|+-. ..++.|.|.+++..|.|.|+|.+....+
T Consensus 155 g~ta~f~c~vn~e~~p~i~w~kn~~p---l~~~~r~i~------lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ 225 (1381)
T KOG4221|consen 155 GQTALFSCEVNAEPVPTIMWLKNDQP---LPLDSRVIV------LPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAE 225 (1381)
T ss_pred CCcEEEEEEEcCccCceeEEeccccc---ccCCCcEEE------cCCCcEEecccccCCCceEEEEEecCCcCCccceeE
Confidence 45566678777889999999999864 234557765 3499999999999999999999954321
Q ss_pred -----------------CCC--CCCCCcEEEEEEeE---------E---------------ecCCcEEEEcccCCCCCee
Q psy534 83 -----------------SPN--SHKNGTWFHLDVHG---------V---------------FNDGTELRISNIRSQDIGD 119 (145)
Q Consensus 83 -----------------~~~--~~~~g~~~~l~c~~---------~---------------~~~~~~L~i~~v~~~d~G~ 119 (145)
.|. ....|+.+.|.|.. + ...+.+|.|.+++..|+|.
T Consensus 226 ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~ 305 (1381)
T KOG4221|consen 226 LTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGK 305 (1381)
T ss_pred EEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCce
Confidence 111 13459999999981 0 1123578999999999999
Q ss_pred eEEEEecC--CC---CcEEEEeCe
Q psy534 120 YTCLATHV--LY---PDLLVVLGS 138 (145)
Q Consensus 120 Y~C~a~n~--~g---~~~~v~~~~ 138 (145)
|+|+|.|. .+ ++|.|....
T Consensus 306 YtC~Atn~~D~idasaev~V~a~P 329 (1381)
T KOG4221|consen 306 YTCRATNTNDSIDASAEVTVLAPP 329 (1381)
T ss_pred EEEEecCCCcccccceEEEEEcCC
Confidence 99999993 33 677776654
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.35 E-value=1.3e-11 Score=92.62 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=76.4
Q ss_pred hccceeeEEee-----cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC--
Q psy534 10 IFQMLSVGDFA-----DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-- 82 (145)
Q Consensus 10 ~~~~~~~~~w~-----~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-- 82 (145)
.+.|+.+.|-. .|.|.+.++|+|++.. . .|..... ....|.|.+++.+|+|.|+|.+.+...
T Consensus 40 ~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~-~-----~~~~~~~-----~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~ 108 (326)
T PHA02785 40 ENEPVILPCPQINTLSSGYNILDILWEKRGAD-N-----DRIIPID-----NGSNMLILNPTQSDSGIYICITKNETYCD 108 (326)
T ss_pred cCCCEEEECCCccccccCCCCceEEEEECCCc-c-----ceEEEcc-----CCceEEEcccCcccCeEEEEEEECCCcce
Confidence 36788888875 5889999999999742 1 1222211 134588999999999999999965321
Q ss_pred -----------CC---------CCCCCCcEEEEEEeE-----------E---------------ecCCcEEEEcccCCCC
Q psy534 83 -----------SP---------NSHKNGTWFHLDVHG-----------V---------------FNDGTELRISNIRSQD 116 (145)
Q Consensus 83 -----------~~---------~~~~~g~~~~l~c~~-----------~---------------~~~~~~L~i~~v~~~d 116 (145)
.+ .....|....+.|.. . ...++.|.|.+++.+|
T Consensus 109 ~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d 188 (326)
T PHA02785 109 MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKND 188 (326)
T ss_pred EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhh
Confidence 11 112347778888950 0 0112479999999999
Q ss_pred CeeeEEEEecCCC
Q psy534 117 IGDYTCLATHVLY 129 (145)
Q Consensus 117 ~G~Y~C~a~n~~g 129 (145)
+|.|+|.|.|..|
T Consensus 189 ~G~Y~C~~~n~~g 201 (326)
T PHA02785 189 AGYYTCVLKYIYG 201 (326)
T ss_pred CeEEEEEEEeccC
Confidence 9999999999887
No 7
>KOG4194|consensus
Probab=99.31 E-value=2.1e-11 Score=95.80 Aligned_cols=115 Identities=22% Similarity=0.262 Sum_probs=87.0
Q ss_pred hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-------
Q psy534 10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------- 82 (145)
Q Consensus 10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------- 82 (145)
-++...+.|-+.|.|.|.|.|.|.++.........|.+...+ +..+-|.||+.+|+|.|.|.|.+...
T Consensus 626 tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpe-----dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAt 700 (873)
T KOG4194|consen 626 TGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPE-----DDVFFITNVKIEDQGIYTCTAQNVAGQISANAT 700 (873)
T ss_pred cccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCC-----CCEEEEecccccccceeEEeeeccccceeeceE
Confidence 345566789899999999999998876444445668887654 78899999999999999999976531
Q ss_pred -----CCC--------CCCCCcEEEEEEeE------------------------EecC-CcEEEEcccCCCCCeeeEEEE
Q psy534 83 -----SPN--------SHKNGTWFHLDVHG------------------------VFND-GTELRISNIRSQDIGDYTCLA 124 (145)
Q Consensus 83 -----~~~--------~~~~g~~~~l~c~~------------------------~~~~-~~~L~i~~v~~~d~G~Y~C~a 124 (145)
.|. ....|+.+.|.|.. .+.+ +-.|.+.+...+|+|.|+|..
T Consensus 701 L~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem 780 (873)
T KOG4194|consen 701 LTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEM 780 (873)
T ss_pred EEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEE
Confidence 111 12349999999981 1122 235777888899999999999
Q ss_pred ecCCC
Q psy534 125 THVLY 129 (145)
Q Consensus 125 ~n~~g 129 (145)
.|..|
T Consensus 781 ~~~~~ 785 (873)
T KOG4194|consen 781 SNTLG 785 (873)
T ss_pred Eeecc
Confidence 99988
No 8
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.28 E-value=1.7e-11 Score=72.97 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=46.4
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+-|.+.|.|.|.+.|+|++... ... .+|+.+..+ ..+..+|.|.+++.+|+|.|.|.+.|.
T Consensus 2 ~l~C~v~G~P~P~i~W~k~~~~i-~~~-~~r~~~~~~--~~g~~~L~I~~~~~~D~G~Y~C~A~N~ 63 (75)
T cd05892 2 KLECQISAIPPPKIFWKRNNEMV-QYN-TDRISLYQD--NSGRVTLLIKNVNKKDAGWYTVSAVNE 63 (75)
T ss_pred EEEEEEEecCCCeEEEEECCEEC-cCC-CCeEEEEEc--CCCcEEEEECCCChhhCEEEEEEEEcC
Confidence 56788899999999999997542 211 246665432 123458999999999999999999864
No 9
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.26 E-value=3.1e-11 Score=71.61 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=44.9
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|-+.|.|.|.+.|+|++..........|++... ....|.|.+++.+|+|.|.|.|.+.
T Consensus 2 ~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~A~N~ 62 (75)
T cd05763 2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP-----EDDVFFIVDVKIEDTGVYSCTAQNT 62 (75)
T ss_pred EeEeecccccCCEEEEEeCCCccCCcccccceEEec-----CCCEEEEeeCCcccCEEEEEEEEcC
Confidence 457888899999999999875322222234444422 2568999999999999999999753
No 10
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.26 E-value=2e-11 Score=72.35 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=47.6
Q ss_pred cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+-|-+.|.|.|.+.|+|++.... -..|+.+. .+++|.|.+++.+|+|.|.|.|.+.
T Consensus 2 ~~~~l~C~~~g~P~p~v~W~k~~~~l~---~~~r~~~~------~~g~L~I~~v~~~D~G~Y~C~A~N~ 61 (73)
T cd05852 2 GRVIIECKPKAAPKPKFSWSKGTELLV---NNSRISIW------DDGSLEILNITKLDEGSYTCFAENN 61 (73)
T ss_pred CeEEEEEecceeCCCEEEEEeCCEecc---cCCCEEEc------CCCEEEECcCChhHCEEEEEEEECC
Confidence 456788988999999999999875422 12466552 3678999999999999999999864
No 11
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.26 E-value=2.3e-11 Score=72.47 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=46.3
Q ss_pred cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..+.+.|-+.|.|.|.+.|+|++..........|... .+++|.|.+++.+|+|.|.|.+.+
T Consensus 2 ~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N 62 (76)
T cd05867 2 ETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-------SSGALILTDVQPSDTAVYQCEARN 62 (76)
T ss_pred CeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-------eCCEEEECCCChhhCEEEEEEEEC
Confidence 4567889999999999999998854222122223332 267899999999999999999975
No 12
>KOG4221|consensus
Probab=99.25 E-value=2e-11 Score=101.47 Aligned_cols=124 Identities=23% Similarity=0.256 Sum_probs=93.2
Q ss_pred HHhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC---
Q psy534 6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR--- 82 (145)
Q Consensus 6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~--- 82 (145)
++...+.++.+-|-+.|.|.|.+.|.+++.. ++.+- .|+.+ .+.++|.|++++..|+|.|+|+|.+...
T Consensus 247 ~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~-i~~ds-~rivl------~g~~slliS~a~~~dSg~YtC~Atn~~D~id 318 (1381)
T KOG4221|consen 247 AVVVEGDDVVLECVVSGVPKPSVKWLRNGEK-ISVDS-YRIVL------VGGSSLLISNATDDDSGKYTCRATNTNDSID 318 (1381)
T ss_pred cccccCCcEEEEEEecCCCCCceEEeeCCee-eeecc-eEEEE------ecccceEEeccccccCceEEEEecCCCcccc
Confidence 4566788999999999999999999998754 22221 45655 3488999999999999999999976321
Q ss_pred ---------CC------CC--CCCCcEEEEEEeE-----------------------EecCCcEEEEcccCCCCCeeeEE
Q psy534 83 ---------SP------NS--HKNGTWFHLDVHG-----------------------VFNDGTELRISNIRSQDIGDYTC 122 (145)
Q Consensus 83 ---------~~------~~--~~~g~~~~l~c~~-----------------------~~~~~~~L~i~~v~~~d~G~Y~C 122 (145)
+| .. +..+.++.+.|.. ....+..|+|.-+-..|+|.|.|
T Consensus 319 asaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQc 398 (1381)
T KOG4221|consen 319 ASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQC 398 (1381)
T ss_pred cceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhh
Confidence 11 11 2347788888971 11223358999899999999999
Q ss_pred EEecCCC-----CcEEEEeC
Q psy534 123 LATHVLY-----PDLLVVLG 137 (145)
Q Consensus 123 ~a~n~~g-----~~~~v~~~ 137 (145)
.++|.+| +++.|+.+
T Consensus 399 vaen~~G~a~a~a~l~vv~~ 418 (1381)
T KOG4221|consen 399 VAENDAGSAQAAAQLEVVPQ 418 (1381)
T ss_pred hhccCcccccchhhheeccC
Confidence 9999999 77777666
No 13
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.23 E-value=2.8e-11 Score=73.91 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=52.6
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
....+.++.+.|.+.|.|.|.+.|++++...... .+|+.+... ...++|.|.++..+|+|.|.|.+.|.
T Consensus 6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~--~~r~~~~~~---~~~~~L~I~~~~~~D~G~Y~c~a~N~ 74 (86)
T cd05894 6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET--EGRVRVESY---KDLSSFVIEGAEREDEGVYTITVTNP 74 (86)
T ss_pred EEEcCCEEEEEeeEeecCCCeEEEEECCEECccC--CCeEEEEEc---CCeEEEEECCCccCcCEEEEEEEEeC
Confidence 3456778999999999999999999998543221 235554321 23678999999999999999999864
No 14
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.22 E-value=3.4e-11 Score=71.31 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=47.3
Q ss_pred ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+..+.+.|-+.|.|.|.+.|+|++.. +.. ..+... ..+++|.|.+++.+|+|.|.|.|.+.
T Consensus 2 G~~v~l~C~~~g~P~p~i~W~k~g~~-~~~--~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~A~N~ 62 (74)
T cd05745 2 GQTVDFLCEAQGYPQPVIAWTKGGSQ-LSV--DRRHLV------LSSGTLRISRVALHDQGQYECQAVNI 62 (74)
T ss_pred CCeEEEEeECCEecCCEEEEEECCEE-CCC--CCCeEE------ccCCeEEEeeCCHHhCEEEEEEEEeC
Confidence 46778899999999999999998753 221 223333 23679999999999999999999864
No 15
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.22 E-value=3.5e-11 Score=71.65 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=46.1
Q ss_pred eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+.+-|.+.|.|.|.+.|+|++..... -..|+.+..+ ..+..+|.|.+++.+|+|.|.|.|.|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~--~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 63 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTH--NTDRVSMHQD--NCGYICLLIQGATKEDAGWYTVSAKNE 63 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCC--CCCeEEEEEc--CCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence 35679999999999999999854321 1245555322 112347999999999999999999863
No 16
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.22 E-value=4.8e-11 Score=70.74 Aligned_cols=59 Identities=25% Similarity=0.419 Sum_probs=45.4
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|.+.|.|.|.+.|+|++.. +......|+.. ..+++|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~l~C~~~G~P~p~v~W~k~~~~-~~~~~~~~~~~------~~~g~L~i~~~~~~D~G~Y~C~a~N~ 60 (74)
T cd05738 2 TMLCAASGNPDPEITWFKDFLP-VDTTSNGRIKQ------LRSGALQIENSEESDQGKYECVATNS 60 (74)
T ss_pred EEEEEEeEecCCEEEEEECCEE-CccCCCCCEEE------cCCcEEEECCCChhhCEEEEEEEECC
Confidence 4678889999999999998753 22223345554 23678999999999999999999853
No 17
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.19 E-value=1e-10 Score=70.13 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=44.9
Q ss_pred eeEEeecCCCccEEEEecCCCCcccc-----cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAE-----EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~-----~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|.+.|.|.|.+.|++++...... ...+|+... .+++|.|.+++.+|+|.|.|.|.+.
T Consensus 2 ~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 2 TLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL------SNGSLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred EeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe------cCCeEEECcCCcccCEEEEEEEEeC
Confidence 46798999999999999975321100 133555542 3689999999999999999999864
No 18
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.18 E-value=1.2e-10 Score=69.92 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=43.4
Q ss_pred eEEeecCCCccEEEEecCCCCcccccc-cceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 16 VGDFADDEDIPVYIWYDSYPTHEAEEY-KGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 16 ~~~w~~g~p~p~~~w~k~~~~~~~~~~-~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+-|-+.|+|.|.+.|||++.......+ ..+..... .....++|.|.+++.+|+|.|.|.|.|.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~YtC~A~N~ 66 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVIN--NTEYHGCLQLDNPTHLNNGIYTLVAKNE 66 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeec--ccceEEEEEECCCCcccCEEEEEEEEcC
Confidence 445667999999999999865322221 11111111 1233678999999999999999999864
No 19
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.18 E-value=6e-11 Score=69.77 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=44.4
Q ss_pred eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+.+.|.+.|.|.|.+.|++++..... .+.... ....+|.|.+++.+|+|.|.|.|.+.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~----~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~ 58 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSP----NRTKKL-----NNNKTLQLDNVLESDDGEYVCTAENS 58 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCC----CceeEE-----cCCCEEEEcccCHHhCEEEEEEEEcC
Confidence 35679999999999999999754321 122221 23789999999999999999999853
No 20
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.18 E-value=6.5e-11 Score=69.19 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=44.6
Q ss_pred eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+.+.|.+.|.|.|.+.|+|++.. +. ...|..+ ..++.|.|.+++.+|+|.|.|.+.+.
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~-~~--~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~a~N~ 58 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQ-VT--ESGKFHI------SPEGYLAIRDVGVADQGRYECVARNT 58 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEE-CC--CCCCEEE------CCCCEEEECcCChhhCEEEEEEEECC
Confidence 35779889999999999998743 22 1234444 22678999999999999999999753
No 21
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.18 E-value=1.9e-10 Score=69.71 Aligned_cols=67 Identities=19% Similarity=0.174 Sum_probs=49.4
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.++.+.|.+.|.|.|.+.|+|++..........+... .....+|.|.+++.+|+|.|.|.+.+.
T Consensus 7 ~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~-----~~~~~~l~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05857 7 PAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKV-----RNQHWSLIMESVVPSDKGNYTCVVENE 73 (85)
T ss_pred CCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEE-----eCCceEEEEccCCcccCEEEEEEEEeC
Confidence 4577889999999999999999999754222111112222 123678999999999999999999863
No 22
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.18 E-value=1.6e-10 Score=68.68 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=45.7
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|.+.|.|.|.+.|+|++.. +... ..|+.+..+ ..+..+|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~L~C~v~G~P~P~v~W~k~~~~-i~~~-~~r~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 63 (75)
T cd05744 2 RLECRVSAIPPPQIFWKKNNEM-LTYN-TDRISLYQD--NCGRICLLIQNANKEDAGWYTVSAVNE 63 (75)
T ss_pred EEEEEEeecCCCeEEEEECCEE-CCCC-CCcEEEEEc--CCCeEEEEECCCCcccCEEEEEEEEcC
Confidence 5678899999999999999854 2211 235554321 123457999999999999999999864
No 23
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.17 E-value=1.6e-10 Score=69.18 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=47.5
Q ss_pred cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|-+.|.|.|.+.|++++..... ..|+.+.. ..+.+.|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~~v~l~C~~~g~P~p~v~W~~~~~~~~~---~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 64 (78)
T cd05743 2 ETVEFTCVATGVPTPIINWRLNWGHVPD---SARVSITS---EGGYGTLTIRDVKESDQGAYTCEAINT 64 (78)
T ss_pred CEEEEEEEEEEecCCEEEEEECCeECCC---CCCEEEEE---CCCEEEEEECCCChHHCEEEEEEEEec
Confidence 4678889999999999999998753221 22443322 134678999999999999999999764
No 24
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.17 E-value=4.2e-11 Score=70.68 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=43.2
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|.+.|.|.|.+.|+|++.+. ... ..+... ...+|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l-~~~-~~~~~~-------~~~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPA-AEK-CSRYHV-------DGYSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEEC-CCC-CcEEEe-------CCCEEEECcCCHHHCEEEEEEEEcc
Confidence 46788899999999999998542 211 123332 1458999999999999999999864
No 25
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.17 E-value=1.5e-10 Score=70.90 Aligned_cols=63 Identities=25% Similarity=0.344 Sum_probs=49.0
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+..+.+.|.+.|.|.|.+.|+|++... ... .++.. .+..|.|.+++.+|+|.|.|.|.|.
T Consensus 13 ~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~-~~~--~~~~~-------~~~~L~I~~v~~~D~G~Y~C~A~N~ 75 (88)
T cd05851 13 ALKGQNVTLECFALGNPVPVIRWRKILEPM-PAT--AEISM-------SGAVLKIFNIQPEDEGTYECEAENI 75 (88)
T ss_pred EeCCCcEEEEEEecccCCCEEEEEECCcCC-CCC--CEEec-------CCCEEEECcCChhhCEEEEEEEEcC
Confidence 346788999999999999999999987542 111 22221 2568999999999999999999864
No 26
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.17 E-value=9.9e-11 Score=69.12 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=47.0
Q ss_pred cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|.+.|.|.|.+.|+|++... . ...|+.+. .+++|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~~v~L~C~~~g~P~p~v~W~k~~~~~-~--~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~ 61 (73)
T cd04969 2 GDVIIECKPKAAPKPTISWSKGTELL-T--NSSRICIW------PDGSLEILNVTKSDEGKYTCFAENF 61 (73)
T ss_pred CeEEEEEeeeEcCCCEEEEEECCEEc-c--cCCCEEEC------CCCeEEEccCChhHCEEEEEEEECC
Confidence 35678899999999999999997542 1 23455552 3578999999999999999999864
No 27
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.16 E-value=4.8e-11 Score=69.49 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=42.0
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|.+.|.|.|.+.|||++.. +. .+ .....|.|.++..+|+|.|.|.+.|.
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~-l~----~~---------~~~~~L~i~~v~~~D~G~YtC~a~N~ 53 (67)
T cd05863 2 KLPVKVAAYPPPEFQWYKDGKL-IS----GK---------HSQHSLQIKDVTEASAGTYTLVLWNS 53 (67)
T ss_pred EEEEEEEEeCCCEEEEEECCEE-Cc----cc---------CCcCEEEECCCCHHHCEEEEEEEEEC
Confidence 4678889999999999999854 21 11 23678999999999999999999853
No 28
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.16 E-value=1.6e-10 Score=68.96 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=44.3
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|.+.|.|.|.+.|+|++.. +... ..+..+. ....+|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~L~C~~~g~P~p~v~W~k~g~~-l~~~-~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~ 60 (77)
T cd05760 2 TLRCHIDGHPRPTYQWFRDGTP-LSDG-QGNYSVS-----SKERTLTLRSAGPDDSGLYYCCAHNA 60 (77)
T ss_pred EEEEEeeecCCCcEEEEECCEE-CCCC-CccEEEe-----CCCCEEEEeeCCcccCEEEEEEEEeC
Confidence 5678888999999999998754 2211 1233332 22568999999999999999999863
No 29
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.15 E-value=1.4e-10 Score=68.15 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=44.5
Q ss_pred eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+.+.|-+.|.|.|.+.|+|++..... ..++.+. .++.|.|.+++.+|+|.|.|.|.|.
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~~~~~---~~~~~~~------~~~~l~i~~v~~~D~G~Y~C~A~N~ 59 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGDMVIP---SDYFKIV------KEHNLQVLGLVKSDEGFYQCIAEND 59 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCeECCC---CCCEEEE------ecCCEEEEcCCcccCEEEEEEEEcC
Confidence 56789899999999999999854321 1234432 2567899999999999999999863
No 30
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.15 E-value=2.5e-10 Score=67.51 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=46.3
Q ss_pred eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+.+-|.+.|.|.|.+.|++++... . ...|+.+.. ......|.|.+++.+|+|.|.|.+.|.
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l-~--~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 62 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPL-K--LSGRVQIET---TASSTSLVIKNAERSDSGKYTLTLKNP 62 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEc-C--CCCeEEEEE---CCCeEEEEECCCCcCcCEEEEEEEECC
Confidence 567788999999999999997542 1 223444422 134788999999999999999999853
No 31
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.14 E-value=1.5e-10 Score=68.96 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=45.3
Q ss_pred cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.++.+.|.+.|.|.|.++|++++... ......+... .....|.|.+++.+|+|.|+|.|.+.
T Consensus 2 ~~~~l~C~a~G~P~P~i~W~k~g~~i-~~~~~~~~~~------~~~~~l~i~~v~~~D~G~Y~C~A~N~ 63 (76)
T cd05868 2 EDGTLICRANGNPKPSISWLTNGVPI-EIAPTDPSRK------VDGDTIIFSKVQERSSAVYQCNASNE 63 (76)
T ss_pred CCEEEEEEeeEeCCCeEEEEECCEEc-cccCCCceEE------ecCCEEEECCCCHhhCEEEEEEEEcC
Confidence 56788999999999999999987542 2111111111 11458999999999999999999763
No 32
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.13 E-value=6e-10 Score=65.80 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=44.6
Q ss_pred eeeEEeecC-CCccEEEEecCCCCcccccccce-EEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGR-ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R-~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+.+.|.+.| .|.|.+.|+|++... ......+ ..+.. .....+|.|.+++.+|+|.|.|.+.+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l-~~~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 65 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKEL-NRKNKPRNIKIRN---KKKNSELQINKAKLADSGEYTCVVENI 65 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeec-cccCCcceEEEEe---cCceEEEEEccCCcccCeEEEEEEEEc
Confidence 357899998 999999999987542 2111111 11211 123678999999999999999999864
No 33
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.13 E-value=1.2e-10 Score=68.57 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=42.9
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.+.|.+.|.|.|.+.|+|++.. +... .+.. ....+|.|.+++.+|+|.|.|.+.+
T Consensus 2 ~l~c~v~g~P~p~v~W~k~g~~-l~~~--~~~~-------~~~~~L~I~~v~~~D~G~YtC~a~N 56 (71)
T cd04976 2 RLPVKVKAYPPPEIQWYKNGKL-ISEK--NRTK-------KSGHSLTIKDVTEEDAGNYTVVLTN 56 (71)
T ss_pred EEEeEEEEeCCCEEEEEECCEE-CCCC--CEEE-------cCCCEEEECcCCHHHCEEEEEEEEc
Confidence 4678889999999999998754 2222 2222 2367899999999999999999985
No 34
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.13 E-value=2.6e-10 Score=66.56 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=43.9
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|-+.|.|.|.+.|+|++... ..+|.... ...+|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~l~C~~~g~P~p~v~W~k~~~~~----~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~ 57 (69)
T cd05725 2 EFQCEVGGDPVPTVLWRKEDGEL----PKGRAEIL------DDKSLKIRNVTAGDEGSYTCEAENM 57 (69)
T ss_pred EEEEECccCCCCEEEEEECCccC----CCCcEEEe------eCCEEEECcCChhHCEEEEEEEEcC
Confidence 46788889999999999986532 22344442 2668999999999999999999763
No 35
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.12 E-value=3e-10 Score=70.87 Aligned_cols=71 Identities=23% Similarity=0.337 Sum_probs=52.1
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCC-Cccc---ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP-THEA---EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~~~~---~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+...+..+.+.|-+.|.|.|.+.|++... ..+. ....+|+.+.. ..+..+|.|.+++.+|+|.|.|.|.+.
T Consensus 12 ~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 86 (98)
T cd05870 12 TTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG---QHGESSLHIKDVKLSDSGRYDCEAASR 86 (98)
T ss_pred EEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee---cCCeeEEEEeeCCcCCCEEEEEEEecc
Confidence 34567889999999999999999998632 1111 12345666532 134678999999999999999999853
No 36
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.12 E-value=3.8e-10 Score=69.29 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=46.9
Q ss_pred cceeeEEeecCCCccEEEEecCCCCccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|-+.|.|.|.+.|+|++...+. .....|+.+. .+++|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~------~~~~L~I~~v~~~D~G~Y~C~a~N~ 69 (90)
T cd05726 2 RTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS------QTGDLTITNVQRSDVGYYICQTLNV 69 (90)
T ss_pred CEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC------CCCeEEEeeCChhhCEEEEEEEEcC
Confidence 4567889888999999999998643210 1123455542 2568999999999999999999863
No 37
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.11 E-value=3.2e-10 Score=70.34 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=48.0
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVFL 80 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~ 80 (145)
+.+.++.+.|-+.|.|.|.++|+|++.. +...-..|..+ .+++|.|.++. .+|+|.|+|.|.|.
T Consensus 17 ~~g~~v~l~C~~~G~P~P~i~W~k~g~~-l~~~~~~~~~~-------~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 17 SDEKKVILNCEARGNPVPTYRWLRNGTE-IDTESDYRYSL-------IDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CCCCEEEEEEEeeecCCCEEEEEECCeE-CccCCCceEEe-------eCCeEEEccCCccCcCEEEEEEEEcC
Confidence 4467889999999999999999998754 22221223332 25789999985 69999999999864
No 38
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.11 E-value=4.7e-10 Score=67.71 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=43.3
Q ss_pred eEEeecCCCccEEEEecCCCCcccccccceEEEecC--CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 16 VGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDK--ESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 16 ~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~--~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+-|-++|.|.|.++|||++....... ..+...... ......+.|.|.+++.+|+|.|+|.|.|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~ 68 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESD-YIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNE 68 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCC-ceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeC
Confidence 45667899999999999985432222 111111110 01233678999999999999999999864
No 39
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.11 E-value=4.4e-10 Score=67.38 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=45.3
Q ss_pred cceeeEEeecCCCccEEEEecCCCC----cccc-cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPT----HEAE-EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~----~~~~-~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|.+.|.|.|.+.|||+... .+.+ .+..++.. ...++|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~a~N~ 69 (81)
T cd05765 2 ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV------TNIGQLVIYNAQPQDAGLYTCTARNS 69 (81)
T ss_pred CcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE------ccccEEEEccCCcccCEEEEEEEecC
Confidence 4678899999999999999997421 1111 11122222 23578999999999999999999864
No 40
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.11 E-value=1.4e-10 Score=68.14 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=42.3
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+-|.+.|.|.|.+.|||++... ... .++. ....|.|.++..+|+|.|.|.+.|.
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l-~~~--~~~~--------~~~~L~I~~v~~~D~G~YtC~a~N~ 56 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLI-VLN--HTFK--------RGVHLTIYEVTEKDAGNYTVVLTNP 56 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEEC-CCC--CEEc--------cCCEEEECcCCHHHCEEEEEEEEEC
Confidence 35688899999999999998542 221 1221 2567999999999999999999864
No 41
>KOG4222|consensus
Probab=99.11 E-value=6.1e-10 Score=92.38 Aligned_cols=114 Identities=26% Similarity=0.306 Sum_probs=79.4
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCccccc-ccceEEEecCCCCCCeeeEEEccc----C-CCCCEEEEEEEEEecC
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEE-YKGRISRVDKESPFGMASLNLTKI----R-ESDQGWYECKVVFLNR 82 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v----~-~~D~G~Y~C~~~~~~~ 82 (145)
+-..|...=|-+.|.|.|.|.|||++......+ -.-|+. ..+++|.+..+ + ..|.|.|+|.+.+...
T Consensus 44 s~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~-------lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g 116 (1281)
T KOG4222|consen 44 SKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFL-------LPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLG 116 (1281)
T ss_pred cCCCCceeecCCCCCCCCceecccCCcccCCCCCCCccee-------cCCccEEEEecccCCcccCCCceeEeeecCccc
Confidence 445566667888899999999999985322222 222433 23677666433 1 3399999999954320
Q ss_pred --------------------CC--CCCCCCcEEEEEEe--------------------------EEecCCcEEEEcccCC
Q psy534 83 --------------------SP--NSHKNGTWFHLDVH--------------------------GVFNDGTELRISNIRS 114 (145)
Q Consensus 83 --------------------~~--~~~~~g~~~~l~c~--------------------------~~~~~~~~L~i~~v~~ 114 (145)
.+ .....|+.+.|.|. ....+++.|.|.+++.
T Consensus 117 ~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrk 196 (1281)
T KOG4222|consen 117 EAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRK 196 (1281)
T ss_pred eeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEecccc
Confidence 11 23456999999997 0123455899999999
Q ss_pred CCCeeeEEEEecCCC
Q psy534 115 QDIGDYTCLATHVLY 129 (145)
Q Consensus 115 ~d~G~Y~C~a~n~~g 129 (145)
+|+|.|.|+|.|.+|
T Consensus 197 sD~GtY~CVatNmvG 211 (1281)
T KOG4222|consen 197 SDEGTYACVATNMVG 211 (1281)
T ss_pred CCCceeeeeeccccc
Confidence 999999999999999
No 42
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.10 E-value=2.9e-10 Score=67.40 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=45.7
Q ss_pred cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|-+.|.|.|.+.|++++..... ....+... .....|.|.+++.+|+|.|+|.|.+.
T Consensus 2 ~~~~l~C~~~g~P~p~i~W~~~g~~~~~-~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~A~N~ 63 (76)
T cd04978 2 ETGRLDCEAEGIPQPTITWRLNGVPIEE-LPPDPRRR------VDGGTLILSNVQPNDTAVYQCNASNV 63 (76)
T ss_pred CeEEEEEEceeeCCCEEEEEECCEECCC-CCCcceEE------ccCCEEEECCCChhhCEEEEEEEEcc
Confidence 4577889999999999999998754221 11111111 23688999999999999999999753
No 43
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.10 E-value=3.4e-10 Score=69.80 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=51.1
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+...+.++.+.|-+.|. .|.+.|+|++... ..+|+.+. ....+|.|.+++++|+|.|+|.|.+.
T Consensus 14 ~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l----~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~ 77 (91)
T cd05740 14 PPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLL----VPPRLQLS-----NDNRTLTFNNVTRSDTGHYQCEASNE 77 (91)
T ss_pred ccccCCcEEEEEEeCCC-CCEEEEEECCEEC----CCCCEEEe-----CCCCEEEECcCChhhCEEEEEEEEcC
Confidence 56778899999999999 9999999997542 22445442 23578999999999999999999853
No 44
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.10 E-value=1.5e-10 Score=72.81 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=53.2
Q ss_pred chHHHhhhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCC--CCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 3 NSFAVKSIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKE--SPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 3 ~~~~~~~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~--~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+.......+.++.+.|-+.| .|+|.+.|+|++.+. .... +......+ ......+|.|.+++++|+|.|+|.|.|
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i-~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N 86 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTL-TNKL--TEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN 86 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeC-CCCc--ceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence 44556677888999999999 899999999998543 2221 11111110 011257899999999999999999985
Q ss_pred e
Q psy534 80 L 80 (145)
Q Consensus 80 ~ 80 (145)
.
T Consensus 87 ~ 87 (101)
T cd04975 87 S 87 (101)
T ss_pred C
Confidence 3
No 45
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.09 E-value=6.9e-10 Score=69.33 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=51.0
Q ss_pred eeeEEeecCCCccEEEEecCCCCc---ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 14 LSVGDFADDEDIPVYIWYDSYPTH---EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 14 ~~~~~w~~g~p~p~~~w~k~~~~~---~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
...+.|.+..+.+.+.||+++... ...+|++|+.+..+....++.+|.|.+++.+|+|.|+|.+.+
T Consensus 18 ~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~ 86 (100)
T cd05713 18 HMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQS 86 (100)
T ss_pred eeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEEEEEec
Confidence 345779998777788888765432 335688999886554556789999999999999999999974
No 46
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.08 E-value=7.6e-10 Score=68.54 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=51.8
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccc--cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAE--EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~--~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+.++.+.|.+.|.|.|.+.|++++...... ...+|+.... ......|.|.+++.+|+|.|.|.+.+.
T Consensus 13 ~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 84 (96)
T cd05732 13 AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRG---HARVSSLTLKDVQLTDAGRYDCEASNR 84 (96)
T ss_pred EecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeC---CccEEEEEECcCCcCcCEEeEEEEEeC
Confidence 345678899999999999999999987432211 1234554422 133678999999999999999999864
No 47
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.08 E-value=8.6e-10 Score=68.66 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=49.9
Q ss_pred hccceeeEEeecCCCccEEEEecCCCCcccc--cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAE--EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~--~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+..+.+.|.+.|.|.|.+.|++++...... ...+|+.+... ...+.|.|.+++.+|+|.|.|.|.+.
T Consensus 16 ~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~ 85 (97)
T cd05869 16 LEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH---ARVSSLTLKYIQYTDAGEYLCTASNT 85 (97)
T ss_pred cCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcC---ccEEEEEEecCccCcCEEEEEEEecC
Confidence 4577889999999999999999986432211 12345443221 23478999999999999999999764
No 48
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.07 E-value=6e-10 Score=68.39 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=49.6
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+.++.+.|.+.|.|.|.+.|++++...... .+... . ......+|.|.+++.+|.|.|.|.|.+.
T Consensus 12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~---~~~~~-~--~~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT---RTDTL-E--TTVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC---ccEEE-E--ecCCEEEEEEecCCcccCEEEEEEEECC
Confidence 456889999999999999999999998532111 11111 0 0123678999999999999999999853
No 49
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.06 E-value=1e-09 Score=65.53 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=43.6
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC----CCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE----SDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~----~D~G~Y~C~~~~~ 80 (145)
.+.|-+.|.|.|.+.|+|++.. +......++... ..+++|.|.+++. +|+|.|.|.|.|.
T Consensus 2 ~l~C~~~G~P~P~v~W~k~g~~-l~~~~~~~~~~~-----~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05733 2 VIKCEAKGNPPPTFSWTRNGTH-FDPEKDPRVTMK-----PDSGTLVIDNMNGGRAEDYEGEYQCYASNE 65 (77)
T ss_pred EEEeeCcccCCCeEEEEECCeE-CCCCCCCCEEEe-----CCCCEEEEeccCCCCCcCCCEEEEEEEEcC
Confidence 4678888999999999998753 222223344432 2378899998854 7999999999864
No 50
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.06 E-value=1.2e-09 Score=67.17 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=44.6
Q ss_pred cceeeEEeecCCCccEEEEecCCC---CcccccccceEEEecC----CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYP---THEAEEYKGRISRVDK----ESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~---~~~~~~~~~R~~~~~~----~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|.+.|.|.|.+.|+|++. ..+...-..+...+.. ........|.|.+++.+|+|.|.|.|.+.
T Consensus 2 ~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd04974 2 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS 77 (90)
T ss_pred CcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence 456788999999999999999641 1111110111111110 01123468999999999999999999864
No 51
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.05 E-value=8e-10 Score=68.15 Aligned_cols=69 Identities=16% Similarity=0.056 Sum_probs=50.7
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+...+..+.+.|-+.|.|.|.+.|+|++.. +. ...++.+... .....+|.|.+++.+|+|.|.|.+.+.
T Consensus 12 ~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~-l~--~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (92)
T cd05737 12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQA-LA--LSDHYNVKVE--QGKYASLTIKGVSSEDSGKYGIVVKNK 80 (92)
T ss_pred EEeCCCcEEEEEEEEecCCCeEEEEECCEE-Cc--cCCCEEEEEc--CCCEEEEEEccCChhhCEEEEEEEEEC
Confidence 345677889999999999999999999754 22 2233333211 012468999999999999999999863
No 52
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=99.05 E-value=6.2e-10 Score=70.94 Aligned_cols=66 Identities=24% Similarity=0.249 Sum_probs=52.4
Q ss_pred eeeEEeecCC-----CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 14 LSVGDFADDE-----DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 14 ~~~~~w~~g~-----p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
...+.|.+.. ....+.++.++.....++|++|+++..++...++.+|+|++++.+|+|.|+|.+..
T Consensus 23 ~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~ 93 (110)
T cd05902 23 GPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVL 93 (110)
T ss_pred CCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEE
Confidence 3677898843 23445677776555678999999998766677899999999999999999999974
No 53
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.04 E-value=5.7e-10 Score=69.08 Aligned_cols=63 Identities=24% Similarity=0.247 Sum_probs=47.1
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVFL 80 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~ 80 (145)
....++.+-|.+.|.|.|.++|+|++... .. ...|..+ .+++|.|.++. .+|+|.|.|.|.|.
T Consensus 17 ~~~~~v~l~C~a~G~P~P~i~W~k~~~~i-~~-~~~~~~~-------~~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 17 STEGKVSVNCRARANPFPIYKWRKNNLDI-DL-TNDRYSM-------VGGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred ccCCeEEEeCcCccCCCCEEEEEECCEEc-cC-CCCeEEE-------ECCEEEECcCCcCCCCEEEEEEEEeC
Confidence 33456888899999999999999997542 11 1234433 26789999985 69999999999864
No 54
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.04 E-value=1.1e-09 Score=65.02 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=45.7
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|-+.|.|.|.+.|+|++.. +......++.... ....|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~-l~~~~~~~~~~~~-----~~~~l~I~~~~~~D~G~Y~C~a~N~ 61 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMD-ITPKLSKQLTLIA-----NGSELHISNVRYEDTGAYTCIAKNE 61 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEE-CCCCCCccEEEeC-----CCCEEEECcCCcccCEEEEEEEEcC
Confidence 4678888999999999999754 3334445555432 2457999999999999999999853
No 55
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.03 E-value=9.6e-10 Score=68.14 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=46.1
Q ss_pred ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534 11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVFL 80 (145)
Q Consensus 11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~ 80 (145)
+..+.+.|.+.|+|.|.++|++++... ......+..+ .+++|.|.++. .+|+|.|+|.|.|.
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l-~~~~~~~~~~-------~~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEI-KFAPESRYTL-------VAGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEEC-ccCCCceEEE-------ECCeEEEccCCccCcCEEEEEEEEcC
Confidence 457889999999999999999987542 2112233333 15789998865 69999999999864
No 56
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.03 E-value=5.1e-10 Score=67.09 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=48.8
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+.++.+.|.+.|.|.|.+.|++++....... .... .....+|.|.+++.+|+|.|.|.+.+.
T Consensus 6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~---~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 70 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE---IGES-----RKKKWTLSLKNLKPEDSGKYTCHVSNR 70 (82)
T ss_pred ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc---ccee-----cCceEEEEEccCChhhCEEEEEEEEcC
Confidence 4567789999999999999999999875422111 1111 123678999999999999999999753
No 57
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.03 E-value=1e-09 Score=67.81 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=49.5
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+..+.+-|.+.|.|. .+.||+.++..+.. ..|+.+..+ ....+|.|.+++.+|+|.|+|.|.+.
T Consensus 12 v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~--~~r~~~~~~---g~~~~L~I~~v~~~D~G~Y~C~A~N~ 78 (92)
T cd05866 12 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS--SQRVVVQKE---GVRSRLTIYNANIEDAGIYRCQATDA 78 (92)
T ss_pred EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC--CCCEEEEeC---CCeeEEEEecCChHHCEEEEEEEEcC
Confidence 456788999999999998 89999864432322 245554321 12458999999999999999999864
No 58
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.03 E-value=2.3e-09 Score=66.76 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=48.9
Q ss_pred hhhccceeeEEeecCCCc-cEEEEec-CCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDI-PVYIWYD-SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~-p~~~w~k-~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+.++.+.|-+.|.|. |.+.|++ ++.. +... ..|+....+ ....++|.|.+++.+|+|.|+|.|.|.
T Consensus 12 v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~-l~~~-~~r~~v~~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 12 ISVGESKFFLCQVAGEAKDKDISWFSPNGEK-LTPN-QQRISVVRN--DDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred ECCCCeEEEEEEEeCCCCCCEEEEECCCCcC-cccc-CCeEEEEeC--CCCceEEEEeccChhhCEEEEEEEEcC
Confidence 456778899999999985 7999998 4532 2211 224443221 112478999999999999999999864
No 59
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.03 E-value=6.3e-10 Score=68.88 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=50.5
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+...+..+.+.|.+.|.|.|.+.|++++.. +... ..+..+.. ....|.|.+++.+|+|.|.|.+.+.
T Consensus 14 ~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~-~~~~-~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 14 TANLGQSVTLACDADGFPEPTMTWTKDGEP-IESG-EEKYSFNE-----DGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred EEeCCCCEEEEEeccEeCCCEEEEEECCEE-CcCC-CCEEEEeC-----CCCEEEECCCChhhCEEEEEEEEcC
Confidence 345678899999999999999999998754 2211 23443321 2457999999999999999999853
No 60
>KOG4194|consensus
Probab=99.02 E-value=3.7e-09 Score=83.50 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=82.7
Q ss_pred hccceeeEEeecC--CCccEEEEecCCCCcccccccceEEEecC-------CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 10 IFQMLSVGDFADD--EDIPVYIWYDSYPTHEAEEYKGRISRVDK-------ESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 10 ~~~~~~~~~w~~g--~p~p~~~w~k~~~~~~~~~~~~R~~~~~~-------~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
++..+...|-+-+ ..+-++.|-+++....+....+-+++... +.....+.|.+.||+..|.|.|+|.+.+-
T Consensus 517 ~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~ 596 (873)
T KOG4194|consen 517 IGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNH 596 (873)
T ss_pred hccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecc
Confidence 3455666777765 34557889888753222222222222111 11122567999999999999999999653
Q ss_pred cC--------------------CCC-CCCCCcEEEEEEeE---------------------------EecCCcEEEEccc
Q psy534 81 NR--------------------SPN-SHKNGTWFHLDVHG---------------------------VFNDGTELRISNI 112 (145)
Q Consensus 81 ~~--------------------~~~-~~~~g~~~~l~c~~---------------------------~~~~~~~L~i~~v 112 (145)
-. |.+ +...|+...|.|.. ...++..+.|.+|
T Consensus 597 FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnv 676 (873)
T KOG4194|consen 597 FGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNV 676 (873)
T ss_pred cCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecc
Confidence 10 111 12358888889971 1234457899999
Q ss_pred CCCCCeeeEEEEecCCC-----CcEEEEeC
Q psy534 113 RSQDIGDYTCLATHVLY-----PDLLVVLG 137 (145)
Q Consensus 113 ~~~d~G~Y~C~a~n~~g-----~~~~v~~~ 137 (145)
+.+|+|.|+|.|+|.+| ..++|..-
T Consensus 677 k~eD~GiYtC~A~n~AG~isanAtL~V~e~ 706 (873)
T KOG4194|consen 677 KIEDQGIYTCTAQNVAGQISANATLTVLET 706 (873)
T ss_pred cccccceeEEeeeccccceeeceEEEEecC
Confidence 99999999999999998 55555544
No 61
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.02 E-value=1.8e-09 Score=64.45 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=42.6
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC----CCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE----SDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~----~D~G~Y~C~~~~~ 80 (145)
.+.|-+.|.|.|.+.|+|++.. +......+..+. ..+++|.|..++. .|.|.|+|.|.+.
T Consensus 2 ~l~C~a~G~P~P~i~W~k~g~~-l~~~~~~~~~~~-----~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05874 2 VIQCEAKGKPPPSFSWTRNGTH-FDIDKDPKVTMK-----PNTGTLVINIMNGEKAEAYEGVYQCTARNE 65 (77)
T ss_pred EEEeeCcccCCCeEEEEECCeE-CCCcCCCCEEEe-----CCCceEEEeccccCCCCCCCEEEEEEEEcC
Confidence 4678888999999999998753 222222333332 2368899988764 4889999999863
No 62
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.02 E-value=1.4e-09 Score=64.26 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=45.2
Q ss_pred cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|.+.|.|.|.+.|++.+...+... .|... ..+++|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~--~~~~~------~~~~~L~i~~~~~~D~G~Y~C~a~N~ 62 (74)
T cd05764 2 QRATLRCKARGDPEPAIHWISPDGKLISNS--SRTLV------YDNGTLDILITTVKDTGSFTCIASNA 62 (74)
T ss_pred CeEEEEEEccCcCCCEEEEEeCCCEEecCC--CeEEE------ecCCEEEEEECChhhCEEEEEEEECC
Confidence 457788999999999999997543322211 23333 23678999999999999999999853
No 63
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.02 E-value=7.9e-10 Score=64.58 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=43.2
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.|-+.|.|.|.+.|++++.... .++.... .....|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~l~C~~~g~P~p~v~W~k~~~~~~----~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~ 58 (71)
T cd05731 2 LLECIAEGLPTPEISWIKIGGELP----ADRTKFE-----NFNKTLKIDNVSEEDDGEYRCTASNS 58 (71)
T ss_pred EEEEEeeEecCCeEEEEECCeECC----CCceeEe-----cCCCEEEECCCCHHHCEEEEEEEEeC
Confidence 567888899999999999875321 1222221 23678999999999999999999864
No 64
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.02 E-value=1.4e-09 Score=67.98 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=50.4
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.++.+.|-+.|.|.|.+.|+|++... .. ..|+++... .....|.|.++.++|+|.|.|.+.|.
T Consensus 13 ~~G~~v~l~C~~~G~p~p~v~W~kdg~~l-~~--~~~~~~~~~---~~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 13 RAGESVELFCKVTGTQPITCTWMKFRKQI-QE--GEGIKIENT---ENSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred ECCCEEEEEEEEcccCCCceEEEECCEEe-cC--CCcEEEEec---CCeeEEEECCCChhhCEEEEEEEEcC
Confidence 45678889999999999999999998543 21 124443321 23678999999999999999999753
No 65
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.01 E-value=3.5e-10 Score=71.09 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=48.7
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCC--CCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKES--PFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~--~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
......+.+.|-+.|.|.|.+.|+|++.+..... .+......+. .....+|.|.+++.+|+|.|+|.|.|.
T Consensus 15 ~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~--~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd05859 15 ANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL--TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE 87 (101)
T ss_pred EecCCcEEEEEEEEEeCCCceEEEECCEECcCCc--ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence 4455667888889999999999999986532211 1111101100 122478999999999999999999864
No 66
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.00 E-value=7.4e-10 Score=67.33 Aligned_cols=63 Identities=27% Similarity=0.322 Sum_probs=49.9
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
....+.++.+.|-+.|.|.|.+.|++++.. +. ...|+.. .+..|.|.+++.+|+|.|.|.+.+
T Consensus 10 ~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~-~~--~~~~~~~-------~~~~L~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05728 10 EADIGSSLRWECKASGNPRPAYRWLKNGQP-LA--SENRIEV-------EAGDLRITKLSLSDSGMYQCVAEN 72 (85)
T ss_pred EEcCCCcEEEEEEeeEeCCCEEEEEECCEE-CC--CCCeEEE-------eCCEEEEeeCCHHHCEEEEEEEEC
Confidence 356678889999999999999999999854 22 1234443 256899999999999999999975
No 67
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.00 E-value=2.3e-09 Score=65.22 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=44.6
Q ss_pred ceeeEEeecCCCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 13 MLSVGDFADDEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 13 ~~~~~~w~~g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.+.|-+.|.|.| .+.|++++..........+...... ....++|.|.+++.+|+|.|+|.|.+.
T Consensus 2 ~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~YtC~A~n~ 69 (85)
T cd05854 2 NLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV--KETIGDLVIVNAQLSHAGTYTCTAQTV 69 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe--cceEeEEEEccCChhhCeEEEEEEecC
Confidence 46788988899877 5899998754211111222221110 123579999999999999999999753
No 68
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=99.00 E-value=2e-09 Score=69.04 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=52.9
Q ss_pred eeeEEeecC------C--CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 14 LSVGDFADD------E--DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 14 ~~~~~w~~g------~--p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
-..|.|.+- . ....+.++.++.....++|++|+++..++...++.+|+|.+++.+|+|.|+|++..
T Consensus 27 ~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~ 100 (117)
T cd05901 27 FLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMH 100 (117)
T ss_pred CcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEE
Confidence 456778762 1 23566677777555678899999998777778899999999999999999999975
No 69
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.00 E-value=1.6e-09 Score=66.70 Aligned_cols=68 Identities=18% Similarity=0.110 Sum_probs=50.5
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
....+..+.+.|-+.|.|.|.+.|++++.. +. ...|+.+... ...++|.|.+++.+|+|.|.|.+.+.
T Consensus 14 ~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~-l~--~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 14 TVSEGESARFSCDVDGEPAPTVTWMREGQI-IV--SSQRHQITST---EYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred EEeCCCcEEEEEEEeecCCCEEEEEECCEE-CC--CCCcEEEEEc---CCeeEEEECCCCcccCEeEEEEEEcC
Confidence 345567788899999999999999998743 22 1234444221 23679999999999999999999763
No 70
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.00 E-value=2.8e-09 Score=63.63 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=42.6
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC----CCCEEEEEEEEEe
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE----SDQGWYECKVVFL 80 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~----~D~G~Y~C~~~~~ 80 (145)
.+.|-+.|.|.|.++|+|++.. +......|+.+. ..+++|.|.++.. +|+|.|.|.|.|.
T Consensus 2 ~l~C~~~G~P~P~v~W~k~g~~-~~~~~~~~~~~~-----~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05875 2 IIECEAKGNPVPTFQWTRNGKF-FNVAKDPRVSMR-----RRSGTLVIDFSGGGRPEDYEGEYQCFARNN 65 (77)
T ss_pred EEEEeccccCCCEEEEEECCEE-ccCcCCCcEEEe-----CCCceEEEeccCCCCCCCCCEEEEEEEEec
Confidence 4678888999999999998753 211223344432 2378899998752 4799999999864
No 71
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.99 E-value=2.1e-09 Score=68.53 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=47.3
Q ss_pred eeeEEeecC--CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 14 LSVGDFADD--EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 14 ~~~~~w~~g--~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
...+.|.+. ...+.+.++.++.....++|++|+++..+....++.+|+|++++.+|+|.|+|.+..
T Consensus 26 ~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~ 93 (110)
T cd05878 26 SPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMH 93 (110)
T ss_pred CCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEe
Confidence 355678772 222344444444334567899999986554556789999999999999999999975
No 72
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.99 E-value=2.2e-09 Score=65.54 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=48.5
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+..+.+.|-+.|.|.|.+.|++++..... . .+.. ..+++|.|.+++.+|+|.|.|.+.+.
T Consensus 13 ~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~-~--~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 13 ALKGQNVTLECFALGNPVPQIKWRKVDGSMPS-S--AEIS-------MSGAVLKIPNIQFEDEGTYECEAENI 75 (88)
T ss_pred EeCCCcEEEEEEeeEeCCCEEEEEECCCcCCC-c--cEEE-------EeCCEEEECCCCcccCEEEEEEEEEC
Confidence 34677889999999999999999998754221 1 1111 23689999999999999999999763
No 73
>KOG4222|consensus
Probab=98.99 E-value=1.2e-09 Score=90.64 Aligned_cols=110 Identities=22% Similarity=0.350 Sum_probs=76.1
Q ss_pred CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-------------CC----
Q psy534 22 DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-------------SP---- 84 (145)
Q Consensus 22 g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-------------~~---- 84 (145)
|.|.|.++|.|++.+.... -..+.+++ ..+.|.|.|+.++|+|.|.|++.+... .|
T Consensus 158 ghpeptvSw~Kdg~pl~~~-~~~~~~li------sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~ 230 (1281)
T KOG4222|consen 158 GHPEPTVSWVKDGKPLDHY-DVPIIALI------SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWK 230 (1281)
T ss_pred CCCCCcceeecCCCccccc-cceeEEEe------cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccc
Confidence 7889999999998653311 12234443 389999999999999999999977542 00
Q ss_pred ---CC-CCCCcEEEEEEe-----------------------EEecCCcEEEEcccCCCCCeeeEEEEecCCC-----CcE
Q psy534 85 ---NS-HKNGTWFHLDVH-----------------------GVFNDGTELRISNIRSQDIGDYTCLATHVLY-----PDL 132 (145)
Q Consensus 85 ---~~-~~~g~~~~l~c~-----------------------~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~ 132 (145)
+. ...|..+.+.|. ....+..+|+|.+++..|+|.|.|.|.|.+| ..+
T Consensus 231 rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~l 310 (1281)
T KOG4222|consen 231 RPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATL 310 (1281)
T ss_pred ccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccce
Confidence 11 112444555555 1112325899999999999999999999998 566
Q ss_pred EEEeCe
Q psy534 133 LVVLGS 138 (145)
Q Consensus 133 ~v~~~~ 138 (145)
+|-...
T Consensus 311 tV~apP 316 (1281)
T KOG4222|consen 311 TVQAPP 316 (1281)
T ss_pred EEecCc
Confidence 665443
No 74
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.99 E-value=2.7e-09 Score=64.59 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=49.7
Q ss_pred hhhccceeeEEee-cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+.++.+.|-+ .|.|.|.+.|+|++... ... ..|..+. .+++|.|.+++.+|+|.|+|.+.+.
T Consensus 8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~-~~~-~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPL-NLD-NERVRIV------DDGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred EeCCCCEEEEEECCCCCCCCEEEEEECCEEC-CCC-CCCEEEc------cCCEEEEeECCcccCEEEEEEEEec
Confidence 4467788899987 69999999999987532 211 2344442 2678999999999999999999864
No 75
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.98 E-value=3.1e-09 Score=65.24 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=44.2
Q ss_pred cceeeEEeecCCCccEEEEecCC---CCcccccccceEEEecCC----CCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSY---PTHEAEEYKGRISRVDKE----SPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~---~~~~~~~~~~R~~~~~~~----~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|.+.|.|.|.+.|++.. +..+..+-..+..+.... ......+|.|.+++.+|+|.|+|.|.+.
T Consensus 2 ~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd05858 2 STVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS 77 (90)
T ss_pred CeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence 45778899999999999999853 111111111111111100 0112368999999999999999999864
No 76
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.97 E-value=6.2e-09 Score=63.70 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=47.8
Q ss_pred cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecC-CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDK-ESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|-+.|.|.+.+.|++++.. +... ..|..+... .......+|.|.++..+|+|.|.|.|.|.
T Consensus 2 ~~~~l~C~~~g~p~~~i~W~k~~~~-i~~~-~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~ 69 (88)
T cd05735 2 QKKEMSCTAHGEKPIIVRWEKEDRI-INPE-MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINS 69 (88)
T ss_pred CeEEEEEEEECCCCCEEEEeeCCEE-CCCC-CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcC
Confidence 4577889999999999999998853 3222 234443221 01122478999999999999999999763
No 77
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.97 E-value=3.6e-09 Score=66.23 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=47.3
Q ss_pred cceeeEEeec---CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 12 QMLSVGDFAD---DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 12 ~~~~~~~w~~---g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..+..+.|.+ +.....+.+...........|++|+++.. ...++++|.|++++.+|.|.|.|++.+
T Consensus 16 ~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~--~~~~daSi~i~nl~~~D~G~Y~C~v~t 84 (99)
T cd05886 16 VKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN--PSFEDGTISLSRLELEDEGVYICEFAT 84 (99)
T ss_pred CCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC--CCCCcceEEEcCCccccCEEEEEEEEe
Confidence 3456788877 23334444443333445567999999864 235799999999999999999999975
No 78
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.96 E-value=2.2e-09 Score=66.53 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=51.0
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcc-----------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHE-----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~-----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 76 (145)
+..+..+.+-|.+.+.+.+.+.||++++..+ ...+..|+.........++.+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~ 83 (94)
T cd07690 4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICE 83 (94)
T ss_pred eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEE
Confidence 4567788899999999999999996653210 11233444433221234577899999999999999999
Q ss_pred EEEe
Q psy534 77 VVFL 80 (145)
Q Consensus 77 ~~~~ 80 (145)
+.+.
T Consensus 84 v~~~ 87 (94)
T cd07690 84 VEDK 87 (94)
T ss_pred ECCc
Confidence 8643
No 79
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.96 E-value=7e-09 Score=61.54 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=43.8
Q ss_pred eeeEEeec-CCCccEEEEecCCCCccc-ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 14 LSVGDFAD-DEDIPVYIWYDSYPTHEA-EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 14 ~~~~~w~~-g~p~p~~~w~k~~~~~~~-~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+.+.|.+. +.|.+.+.||+++..... .....|..... .....+|.|.+++.+|+|.|.|.+.+.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~DsG~Y~C~a~N~ 66 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK---KKKSSELQISKASLADNGEYKCMVSSK 66 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe---CCcEEEEEECcCCcccCEEEEEEEEeC
Confidence 35778876 468889999998754221 11223333211 123678999999999999999999763
No 80
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.95 E-value=4.2e-09 Score=65.22 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=48.5
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEccc-----CCCCCEEEEEEEEEe
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKI-----RESDQGWYECKVVFL 80 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-----~~~D~G~Y~C~~~~~ 80 (145)
..+.++.+.|.+.|.|.|.+.|+|++.. +......+..+ ..+++|.|.++ +++|+|.|+|.+.+.
T Consensus 12 ~~g~~v~l~C~v~g~P~p~i~W~k~g~~-l~~~~~~~~~~------~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 12 VRGGPVVLNCSAEGEPPPKIEWKKDGVL-LNLVSDERRQQ------LPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cCCCCEEEeeecccCCCCEEEEEECCeE-CccccCcceEE------ccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 4567899999999999999999998754 33222233333 23567888877 689999999999864
No 81
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.93 E-value=1.9e-09 Score=66.82 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=48.4
Q ss_pred hhhccceeeEEeecC-----CCccEEEEecCCCCccccc-ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 8 KSIFQMLSVGDFADD-----EDIPVYIWYDSYPTHEAEE-YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g-----~p~p~~~w~k~~~~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
...+.++.+.|-+.| .|.|.+.|||++.....+. ...|+.. .++.|.|.+++.+|+|.|.|.+.+
T Consensus 11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEEcC
Confidence 346778899998888 6899999999985421111 1234332 257899999999999999999975
No 82
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.92 E-value=4.5e-09 Score=65.27 Aligned_cols=67 Identities=18% Similarity=0.033 Sum_probs=49.4
Q ss_pred hhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534 9 SIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN 81 (145)
Q Consensus 9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 81 (145)
..+.++.+-|--. |.|.|.+.|++++....-. -..|..+. ..++.|.|++|+++|+|.|.|.|.+..
T Consensus 16 ~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~-~d~r~~~~-----~~~G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 16 KEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP-EDGRRFVS-----QTNGNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred eeCCcEEEeeCCCCCCCCCEEEEEECCcccccc-cCCCeEEe-----CCCCcEEEeecCHhhCceeEEEEEecc
Confidence 3467777888665 8899999999997532111 13344332 348999999999999999999998754
No 83
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.92 E-value=8.5e-09 Score=65.62 Aligned_cols=70 Identities=9% Similarity=0.008 Sum_probs=49.3
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEec-CCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVD-KESPFGMASLNLTKIR-ESDQGWYECKVVFL 80 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~-~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~ 80 (145)
.++..+.+.|-+.|.|.|.++|++++.. +.. ...|..... .......++|.|.+++ .+|.|.|.|.|.|.
T Consensus 21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~-l~~-~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~ 92 (109)
T cd05773 21 DGSSDANLVCQAQGVPRVQFRWAKNGVP-LDL-GNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNS 92 (109)
T ss_pred CCCCEEEEEEECcccCCCEEEEEECCEE-CCC-CCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeC
Confidence 4567889999999999999999998754 221 122332211 1112235789999997 69999999999864
No 84
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.92 E-value=5.3e-09 Score=63.44 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=43.9
Q ss_pred ceeeEEeecCCCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 13 MLSVGDFADDEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 13 ~~~~~~w~~g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.+.+.|-+.|.|.| .+.|++++..........+..... .....++|.|.+++.+|+|.|.|.+.+
T Consensus 2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n 68 (85)
T cd04970 2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG--GKDSNGDLMIRNAQLKHAGKYTCTAQT 68 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe--cccccceEEEccCCHHhCeeeEEEEec
Confidence 46788999999877 679999875421111111111110 012478899999999999999999975
No 85
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.91 E-value=5.3e-09 Score=66.88 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=34.8
Q ss_pred ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534 38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
...+|++|+++...+...++.+|.|++++.+|+|.|+|.+.
T Consensus 54 ~~~~f~~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~ 94 (112)
T cd05900 54 VNTEYLDRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVM 94 (112)
T ss_pred ECccccCeEEecccCCCCCCcEEEEeecccccCEEEEEEEe
Confidence 45678899998654445679999999999999999999997
No 86
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.91 E-value=5.2e-09 Score=64.31 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=45.8
Q ss_pred hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC-CCCEEEEEEEEEe
Q psy534 10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE-SDQGWYECKVVFL 80 (145)
Q Consensus 10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~ 80 (145)
....+.+.|-+.|.|.|.+.|++++.. +...-..+... .+++|.|.++.. +|+|.|+|.+.+.
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~-l~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTE-IDDEPDSRYSL-------VGGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEE-CCCCCCCCEEE-------ECCEEEEecCCccCCCEEEEEEEEcC
Confidence 335688889999999999999998753 21111223332 257899998874 9999999999753
No 87
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.90 E-value=4.6e-09 Score=64.79 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=50.6
Q ss_pred HHHhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 5 FAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 5 ~~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+.+...+..+.+.|-+.|.|.|.+.||+++... . ...++..... .....+|.|.+++.+|+|.|.|.+.+
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~-~--~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N 79 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDI-E--LSEHYSVKLE--QGKYASLTIKGVTSEDSGKYSINVKN 79 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEEC-C--CCCCEEEEEc--CCCEEEEEECCCChhhCEEEEEEEEe
Confidence 345567888899999889999999999987532 2 2233332111 01235799999999999999999975
No 88
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.90 E-value=7.8e-09 Score=64.23 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=51.0
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCccc--cc---ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA--EE---YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~--~~---~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+...+..+.+-|-+.|.|.|.+.|++.+...+. .. ...|+.+... .....+|.|.+|+.+|+|.|.|.+..
T Consensus 8 tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 8 TVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKS--TPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred EEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeC--CCceEEEEECCCCcccCEEEEEEEEe
Confidence 345677788899999999999999998753211 00 1245544321 12468999999999999999999974
No 89
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.90 E-value=6.6e-09 Score=62.48 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=50.1
Q ss_pred HHhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.....+..+.+.|++.+.|.+.+.|++++...... .+..... .......|.|.+++.+|+|.|.|.+.+.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~---~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 73 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE---HRIGGYK--VRKKKWTLILESVVPSDSGKYTCIVENK 73 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECccc---CceeEEE--ccCcEEEEEEeECCcccCEEEEEEEEEC
Confidence 44567888999999999999999999987432211 1111110 1123568999999999999999999753
No 90
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.89 E-value=8e-09 Score=60.38 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=42.2
Q ss_pred cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|.+.|.|.|.+.|+|++.. +.. ..+.. .+...|.|.++ .|+|.|.|.|.+.
T Consensus 2 ~~v~L~C~a~G~P~P~v~W~k~g~~-l~~--~~~~~-------~~~~~L~i~~~--~d~G~Y~C~A~N~ 58 (69)
T cd05739 2 GSVNLTCVAVGAPMPYVKWMKGGEE-LTK--EDEMP-------VGRNVLELTNI--YESANYTCVAISS 58 (69)
T ss_pred CeEEEEEEeeecCCCEEEEEECCEE-CCC--cccee-------cCccEEEEecc--ccCeeEEEEEEeC
Confidence 4578899999999999999999754 221 11222 23557999997 4899999999864
No 91
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.88 E-value=1.1e-08 Score=62.25 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=51.1
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+.++.+.|-+.|.|.|.+.|++++.. +.. ..|..+... ....+|.|.+++.+|+|.|.|.+.+.
T Consensus 12 v~~G~~~~l~c~~~~~p~~~v~W~~~~~~-l~~--~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 12 VKEGESVTLECEVSGNPPPTVTWYKNGRP-LTS--SQRYQIESD---GGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EETTSEEEEEEEEEESSSSEEEEEETTEE-EES--SSSEEEEEE---TTEEEEEESSESGGGSEEEEEEEEET
T ss_pred EeCCCEEEEEEEEEeCCCCcccccccccc-eee--eeeeeeecc---cceeEEccCCCChhhCEEEEEEEEEC
Confidence 34577888999999999999999999743 332 233333221 25899999999999999999999753
No 92
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.87 E-value=7.6e-09 Score=64.48 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=45.7
Q ss_pred cceeeEEeecCCCccEEEEec---CCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 12 QMLSVGDFADDEDIPVYIWYD---SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k---~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.....+.|.++.+...+.+.+ ......++.|++|+.+. ..+++|.|++++.+|+|.|.|++..
T Consensus 17 ~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~-----~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 17 TEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFS-----QNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEec-----CCceeEEECCCchHHCEEEEEEEEc
Confidence 456678888876555555543 22223456788899873 3379999999999999999999974
No 93
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.86 E-value=2.4e-08 Score=62.54 Aligned_cols=64 Identities=19% Similarity=0.340 Sum_probs=44.4
Q ss_pred eeeEEeec---C-CCccEEEE-ecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 14 LSVGDFAD---D-EDIPVYIW-YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 14 ~~~~~w~~---g-~p~p~~~w-~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
...+.|.+ | .+..+... ++.+. ...++|++|+++..+ ....+.+|.|++++.+|+|.|.|.+..
T Consensus 17 ~~~v~W~k~~~~~~~~~i~~~~~~~~~-~~~~~~~~Rv~f~~~-~~~~~~sL~I~nv~~sD~GtY~C~v~~ 85 (100)
T cd05888 17 VVQVLWIRENAGGVEEEIALLHFKYGQ-TEFHAYEGRVRFETP-NPIADGALILRNAVQADEGKYKCRVIT 85 (100)
T ss_pred EEEEEEEEccCCCCcEEEEEEeccCCc-ccCCCccCcEEEeCC-CCCCceEEEEecCccccceEEEEEEEe
Confidence 55788888 2 23344433 33333 234578899998543 234688999999999999999999974
No 94
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.85 E-value=1.9e-08 Score=60.22 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=46.6
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
...+..+.+.|.+.|. .+.+.|+|++.. +.. ..|+.+. ..+|.|.+++.+|+|.|.|.+.+
T Consensus 6 ~~~G~~v~l~C~~~~~-~~~v~W~k~g~~-l~~--~~~~~~~-------~~~L~I~~~~~~DsG~Y~C~a~n 66 (79)
T cd04973 6 AHPGDLLQLRCRLRDD-VQSINWTKDGVQ-LGE--NNRTRIT-------GEEVQIKDAVPRDSGLYACVTSS 66 (79)
T ss_pred ecCCCCEEEEEEecCC-CceEEEeeCCcC-CCC--CceEEEe-------CCEEEECCCChhhCEEEEEEEeC
Confidence 4567788999999886 568999999854 322 2344431 45899999999999999999974
No 95
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.84 E-value=2.6e-08 Score=61.41 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=47.5
Q ss_pred hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+..+.+.|-+.|.|. .+.|++.+...+.. .+|.....+ .....+|.|.+++.+|+|.|.|.+.+.
T Consensus 12 v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~--~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 12 ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVT--QQQISVVQN--DDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred ECCCCeEEEEEEeEeeCC-eEEEECCCCCEecc--CCCEEEEeC--CCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 456778899999999874 89999854332222 123332211 123578999999999999999999864
No 96
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.84 E-value=2.7e-08 Score=64.00 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=34.5
Q ss_pred cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..+|++|+.+..+ ...++.+|.|++++.+|+|.|.|.+.+
T Consensus 62 ~~~f~~Rv~f~g~-~~~~daSI~I~nv~~sD~G~Y~C~v~n 101 (116)
T cd05879 62 VGPFKERIEWVGN-PSRKDGSIVIHNLDYTDNGTFTCDVKN 101 (116)
T ss_pred ccCccCceEEeCC-CCcCeeEEEEccCCcccCEEEEEEEEc
Confidence 3678999998765 356799999999999999999999975
No 97
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.84 E-value=1.9e-08 Score=62.50 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=49.9
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+...+..+.+.|-+.+.|.|.+.|++.+...+. ....+|+..... .....+|.|.+++.+|+|.|.|.+..
T Consensus 8 ~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 8 TVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA--SWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred EEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC--CCCcEEEEECcCCcccCEEEEEEeEe
Confidence 345678888999999999999999864321110 012345544221 13468999999999999999999974
No 98
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.83 E-value=1.3e-08 Score=61.88 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=44.3
Q ss_pred ceeeEEeecC--CCccEEEEecCCCCccccc-ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 13 MLSVGDFADD--EDIPVYIWYDSYPTHEAEE-YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 13 ~~~~~~w~~g--~p~p~~~w~k~~~~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
++.+.|-+.+ .+.+.+.|++++.. +... -..|+.... .....++|.|.+++.+|+|.|+|.|.+.
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~dg~~-i~~~~~~~~~~~~~--~~~~~~~L~I~nv~~~dsG~YtC~a~n~ 69 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSFNGHL-IDFQKDGDHFERVG--GQDSAGDLMIRSIQLKHAGKYVCMVQTS 69 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEECCEE-CcccCCCccEEEec--cCCCCCcEEEecCCHHHCEEEEEEEEcc
Confidence 3566787764 56888999999864 3221 112433321 1123678999999999999999999754
No 99
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.82 E-value=3.5e-08 Score=61.36 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=47.5
Q ss_pred ceeeEEeecC---CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534 13 MLSVGDFADD---EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 13 ~~~~~~w~~g---~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
.+.++.|.+- ....+..+....+..+...|++|+.+... ...+.+|.|.||+.+|+|.|+|.+.
T Consensus 14 ~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~--~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 14 VLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNS--TREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred cEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecC--CCCccEEEEcCCCcccCEEEEEEEE
Confidence 4677788872 23445555554445567789999998653 2368999999999999999999995
No 100
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.82 E-value=2.2e-08 Score=61.36 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=29.9
Q ss_pred cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.+.+++|+.+. .+++|.|.+++.+|+|.|+|++..
T Consensus 44 ~~~~~~R~~~~------~~~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 44 GPAYSGRETIY------PNGSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred CCCcCCeEEEc------CCceEEEccCCchhcEEEEEEEEc
Confidence 45688999873 369999999999999999999964
No 101
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.81 E-value=1.6e-08 Score=62.69 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=51.8
Q ss_pred hhhccceeeEEe-ecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEEec
Q psy534 8 KSIFQMLSVGDF-ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVFLN 81 (145)
Q Consensus 8 ~~~~~~~~~~~w-~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~ 81 (145)
...+.++.+-|- .+|.|.|.+.|+++....+. ..+|+.. ..++.|.|++|+.+|+| .|.|.|.+..
T Consensus 15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~--~~~Ri~~------~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT--QDERVSM------GQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred EecCCCEEEEecCCCCCCCCEEEEECCCCcccc--ccccEEE------CCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 346788888997 57999999999977643332 2567765 34799999999999999 8999998653
No 102
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.80 E-value=3.2e-08 Score=61.51 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=46.1
Q ss_pred ceeeEEeec--C-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 13 MLSVGDFAD--D-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 13 ~~~~~~w~~--g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.+.++.|.+ + ....+..+.+..+..+.+.|++|+.+.. ....+.+|.|++++.+|+|.|+|++..
T Consensus 14 ~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~--~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 14 TITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN--YSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred cEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC--CCCCccEEEEeCCCccccEEEEEEEEe
Confidence 556788876 2 1233334433334455678999999853 345699999999999999999999853
No 103
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.80 E-value=2e-08 Score=57.38 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=41.2
Q ss_pred cceeeEEee-cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534 12 QMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77 (145)
Q Consensus 12 ~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~ 77 (145)
..+.+.|.. .+.+.+.+.|++++..........+... . ......|.|.+++.+|+|.|.|.|
T Consensus 2 ~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~---~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 2 SSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTN-S---VSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp SEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEET-T---TEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecc-c---ceeeeEEEEccCCHHHCEEEEEEC
Confidence 356788999 6888999999999865322221111110 0 000113999999999999999986
No 104
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.79 E-value=2e-08 Score=61.34 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=45.4
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..+.++.+.|-..+ +.+.+.|++++.. +... ..|+.+. ++.|.|.+++.+|+|.|+|.+..
T Consensus 9 ~~G~~v~L~C~~~~-~~~~i~W~~ng~~-i~~~-~~r~~~~-------~~~L~I~nv~~~DsG~Y~C~a~e 69 (87)
T cd05873 9 KLGNNAELKCSPKS-NLARVVWKFDGKV-LTPE-SAKYLLY-------RDGLLIFNASEADAGRYQCLSVE 69 (87)
T ss_pred ECCCCEEEEEECCC-CCCeEEEEECCEE-CCCC-CceEEEE-------CCcEEEeCCCHHHCEEEEEEEEe
Confidence 45677888898764 6788999999854 2222 1344432 56799999999999999999964
No 105
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.78 E-value=5.9e-08 Score=60.43 Aligned_cols=72 Identities=19% Similarity=0.152 Sum_probs=50.5
Q ss_pred hhhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCC-CCCeeeEEEcccCCCC-CEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKES-PFGMASLNLTKIRESD-QGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~-~~~~~sL~I~~v~~~D-~G~Y~C~~~~~ 80 (145)
+..+..+.+.|-+.|.|.| .+.|++++.. +...-.+|..+..... .....+|.|.+++.+| .|.|.|.|.|.
T Consensus 13 ~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~-i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 13 AILGDKGRVECFIFSTPPPDRIVWTWKENE-LESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred EeCCCcEEEEEEEcccCCCCEeEEEECCEE-ccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 4567889999999999999 6999998753 2222224555433211 1123689999999955 99999999864
No 106
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.75 E-value=3.5e-08 Score=61.05 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=44.3
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCccccc--ccceEEEecCCCCCCeeeE---EE--cccCCCCCEEEEEEEEE
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEE--YKGRISRVDKESPFGMASL---NL--TKIRESDQGWYECKVVF 79 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~--~~~R~~~~~~~~~~~~~sL---~I--~~v~~~D~G~Y~C~~~~ 79 (145)
....+.++.+.|.+.|.|.|.+.|+|++....... ...+..... ++++ .| ..++.+|+|.|+|.+.+
T Consensus 12 ~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~D~G~Y~C~a~N 85 (100)
T cd07693 12 IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLP------SGSLFFLRVVHGRKGRSDEGVYVCVAHN 85 (100)
T ss_pred EEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEec------CCcEEEEEeeccCCCcCcCEEEEEEEEc
Confidence 34567889999999999999999999875422111 111222211 2222 22 23479999999999986
Q ss_pred e
Q psy534 80 L 80 (145)
Q Consensus 80 ~ 80 (145)
.
T Consensus 86 ~ 86 (100)
T cd07693 86 S 86 (100)
T ss_pred c
Confidence 4
No 107
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.75 E-value=8.8e-08 Score=59.38 Aligned_cols=65 Identities=17% Similarity=0.366 Sum_probs=41.8
Q ss_pred ceeeEEeecCC---CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 13 MLSVGDFADDE---DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 13 ~~~~~~w~~g~---p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+...+.|.+.. +..+..+.........+.+++|+.+... ...+.+|.|.+++.+|+|.|.|.+..
T Consensus 16 ~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~sL~I~~v~~~D~G~Y~C~v~~ 83 (98)
T cd05718 16 QITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS--SLEDATISISNLRLEDEGNYICEFAT 83 (98)
T ss_pred eEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC--CCCceEEEEccCCcccCEEEEEEEEe
Confidence 34456777722 2222233222222334567889887543 12688999999999999999999863
No 108
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.73 E-value=4.9e-08 Score=62.71 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=33.7
Q ss_pred ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
....|++|+.+.. +...++.+|.|++++.+|+|.|+|.+.+.
T Consensus 60 ~~~~f~~R~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~ 101 (115)
T cd05880 60 PDGRFKGRVVWDG-NIMRRDASILIWQLQPTDNGTYTCQVKNP 101 (115)
T ss_pred CcccccCeEEEec-CCcCCceEEEEeeCChhhCEEEEEEEEeC
Confidence 3456888987654 34566899999999999999999999753
No 109
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.72 E-value=5.8e-08 Score=58.68 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=43.9
Q ss_pred cceeeEEeecCC--CccEEEEecCCCCcccccccc-eEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDE--DIPVYIWYDSYPTHEAEEYKG-RISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~--p~p~~~w~k~~~~~~~~~~~~-R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.|-+.|. |.|.+.|++.+.......... +... .. .....++|.|.+++.+|+|.|.|.+.+.
T Consensus 2 e~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~L~I~~v~~~DsG~Y~C~a~n~ 71 (84)
T cd05742 2 ETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSL-SE-ATELSSTLTIPNATLKDSGTYTCAASSG 71 (84)
T ss_pred CeEEEEEEEEeCCCccEEEEEecCCcccCCceEeeccccc-cc-ceEEEEEEEECCCChhhCEEEEEEEccC
Confidence 467888999988 889999987654311110000 1110 00 1123678999999999999999999753
No 110
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.72 E-value=7e-08 Score=53.96 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=44.2
Q ss_pred ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+..+.+.|...+.|.+.+.|++++... . .+.... .....|.|.+++.+|+|.|+|.+.+
T Consensus 2 g~~~~l~C~~~~~~~~~v~W~~~~~~~-~----~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 2 GQSVTLTCPAEGDPVPNITWLKDGKPL-P----ESNRLS-----ASGSTLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred CceEEEEeeCccCCCCeEEEEECCEEC-C----CCCEEe-----cCCcEEEEeeCCcccCEEEEEEEec
Confidence 456778898888888999999987432 2 122221 2367899999999999999999864
No 111
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.71 E-value=8.7e-08 Score=59.60 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=44.5
Q ss_pred eeeEEeec---CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 14 LSVGDFAD---DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 14 ~~~~~w~~---g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+..+.|.+ +.|..++..+.........+|++|+.+.. ....+.+|.|++++.+|+|.|+|.+..
T Consensus 16 ~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~sL~I~nv~~~D~G~Y~C~~~~ 82 (97)
T cd05846 16 VLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS--LGLNSTSITIWNVTLEDEGCYKCIFNT 82 (97)
T ss_pred eEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC--CCCCccEEEEeCCceeeeEEEEEEEEe
Confidence 45677876 22334444444333445567888887753 345689999999999999999999863
No 112
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.70 E-value=1.5e-07 Score=57.02 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=44.4
Q ss_pred cceeeEEeecCCCccEEEEecCCCCccccccc--ceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYK--GRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~--~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.++.+.|-+.|.|.+.+.|++.+... ..... .+..+.. .....+|.|.+++.+|+|.|.|.+.+.
T Consensus 2 e~~~l~C~~~~~~~~~~~W~~~~~~~-~~~~~~~~~~~~~~---~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 68 (84)
T cd05861 2 ETITVNCIVQGNEVVDFSWTYPGKDI-GKGIPEVEEVKVPA---TTLRSTLTFPHATVEDSGTYECAAHES 68 (84)
T ss_pred CcEEEEEEEECCCccEEEEEECCccC-CCCceEEEEEecCC---cEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence 46788999999999999998765321 11111 1222110 112678999999999999999999753
No 113
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.69 E-value=1.2e-07 Score=59.95 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=30.8
Q ss_pred cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.+++|..+. .+++|.|.+++++|+|.|.|++.+.
T Consensus 57 gp~~~gR~~~~------~ngSL~I~~v~~~D~G~Y~~~v~~~ 92 (105)
T cd05774 57 GPAYSGRETIY------PNGSLLIQNVTQKDTGFYTLQTITT 92 (105)
T ss_pred CcccCCcEEEe------CCCcEEEecCCcccCEEEEEEEEeC
Confidence 35688999884 4889999999999999999999753
No 114
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.69 E-value=2e-08 Score=61.97 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=44.6
Q ss_pred hhhccceeeEEeecC-----CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 8 KSIFQMLSVGDFADD-----EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g-----~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..++.+..+.|+..+ +|.|.+.|||++.+. ... .+ ... .++.|.|.+++.+|+|.|.|.+.+
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i-~~~--~~-~~~------~~~~L~I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLL-EGD--RK-RFV------KGSKLLIQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeECCEEC-CCC--cc-EEe------cCCEEEEeeCChhhCEEEEEEEEe
Confidence 345667778887652 367899999998542 211 11 111 378999999999999999999975
No 115
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.66 E-value=1.2e-07 Score=57.96 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=45.3
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCccccc-ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEE-YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..+.++.+-|-..+ |.+.+.|++++....... ...|+.. ....|.|.+++.+|+|.|+|.+.+
T Consensus 9 ~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~~ 72 (89)
T cd04979 9 VEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-------TEDGLLIRSVSPADAGVYTCQSVE 72 (89)
T ss_pred ECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-------cCCCEEEccCCHHHCEEEEEEEec
Confidence 45678888898877 788999999975421111 1234433 145699999999999999999964
No 116
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.64 E-value=1.8e-07 Score=60.04 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=32.9
Q ss_pred cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...|++|+.+..+ ...++.+|.|++++.+|+|.|.|.+.+.
T Consensus 62 ~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 62 DGRFKDRVEWVGN-PSRKDASIVIHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred CccccCcEEEecC-CcCCeeEEEEeeCCcccCEEEEEEEEeC
Confidence 4567888887532 3455799999999999999999999854
No 117
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.63 E-value=2.5e-07 Score=57.16 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=49.3
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+...+..+.+-|.+.+.+.+.+.|++.....+. ....+|+..... .....+|.|.+++.+|+|.|+|.+..
T Consensus 8 ~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 8 TVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNF--SANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred EEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcC--CCCeeEEEEccCCcccCEEEEEEEec
Confidence 356788899999998888899999864321110 011245554321 13467899999999999999999863
No 118
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.63 E-value=2e-07 Score=60.19 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=31.7
Q ss_pred ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+++++|+.+..+ ...++++|.|++++.+|+|.|.|++..
T Consensus 63 ~~f~gR~~~~~~-~~~~~~sL~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 63 ESTRGRFRLLGD-LGKKNCSLLISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred ccccccEEEecC-CCCCEEEEEEccCChhhCeEEEEEEEc
Confidence 467889887533 456689999999999999999998853
No 119
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.63 E-value=1.6e-07 Score=59.40 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=53.1
Q ss_pred HHhhhccceeeEEeecCCCccEEEEecCCCC---c--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534 6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYPT---H--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE 74 (145)
Q Consensus 6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~---~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 74 (145)
..+..+.++.+-|-+.+.+.+.+.||+.... . ....+.+|+.+... ......+|.|++++.+|+|.|+
T Consensus 8 v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~ 86 (109)
T cd04983 8 LSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD-KSRKSSSLHISAAQLSDSAVYF 86 (109)
T ss_pred eEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc-ccCCEEEEEECCCCHHHCEEEE
Confidence 3566788888999888777788899876421 0 01135677776432 2346889999999999999999
Q ss_pred EEEEE
Q psy534 75 CKVVF 79 (145)
Q Consensus 75 C~~~~ 79 (145)
|.+.+
T Consensus 87 C~~~~ 91 (109)
T cd04983 87 CALSE 91 (109)
T ss_pred EEEec
Confidence 99874
No 120
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.61 E-value=1.3e-07 Score=67.67 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=46.7
Q ss_pred hhccceeeEEeec-----CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 9 SIFQMLSVGDFAD-----DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 9 ~~~~~~~~~~w~~-----g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..+..+.+.|-+. |.|.|.+.|||++.... ...|+.+.. .+.+|.|.+++++|+|.|+|.+..
T Consensus 142 ~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~---~~~r~~~~~-----~~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 142 NSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL---YTDRIQLRN-----NNSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred ecCCCEEEEeeCCCCccccCCCceEEEEECCEECC---CCCCEEEeC-----CCCEEEECcCCHHhCEEEEEEEEE
Confidence 3466778889876 34679999999986432 223555432 356899999999999999999974
No 121
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.61 E-value=1.2e-07 Score=56.01 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=24.3
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
...|.|.+++.+|+|.|+|.|.|.+|
T Consensus 39 ~~~L~I~~v~~~D~G~Y~C~A~N~~G 64 (74)
T cd05745 39 SGTLRISRVALHDQGQYECQAVNIVG 64 (74)
T ss_pred CCeEEEeeCCHHhCEEEEEEEEeCCC
Confidence 34899999999999999999999999
No 122
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.60 E-value=2.1e-07 Score=56.06 Aligned_cols=59 Identities=10% Similarity=0.150 Sum_probs=44.4
Q ss_pred hhhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+.++.+-|-+.|.|.| .+.|+|++.. +.. +. ....+.|.|.++ .|+|.|.|.|.|.
T Consensus 10 v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~-l~~----~~-------~~~~s~L~i~~~--~d~g~Y~C~A~N~ 69 (81)
T cd05749 10 VTANTPFNLTCQAVGPPEPVEILWWQGGSP-LGD----PP-------APSPSVLNVPGL--NETSKFSCEAHNA 69 (81)
T ss_pred EcCCCCEEEEEEeeeecCCeEEEEEECCEE-CCC----CC-------CCCCCEEEEccc--cCCeEEEEEEEec
Confidence 3457788899999999999 6999999854 221 11 122568999987 5889999999864
No 123
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.59 E-value=1.6e-07 Score=55.45 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=24.0
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+|.|.+++.+|+|.|+|.|+|.+|
T Consensus 39 g~L~I~~v~~~D~G~Y~C~A~N~~G 63 (73)
T cd05852 39 GSLEILNITKLDEGSYTCFAENNRG 63 (73)
T ss_pred CEEEECcCChhHCEEEEEEEECCCC
Confidence 4899999999999999999999999
No 124
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.59 E-value=2.4e-07 Score=58.40 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=30.2
Q ss_pred ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..+++|+.+.. ...++.+|.|++++.+|+|.|+|.+.+
T Consensus 52 ~~~~~r~~~~~--~~~~~~sL~I~~v~~sD~G~Y~C~v~~ 89 (106)
T cd05714 52 GSGRVRVPLYP--ADPGDASLVITDLRLEDSGRYRCEVID 89 (106)
T ss_pred CCCceEEEeeC--CCCCcceEEECCCCHHHCEEEEEEEEc
Confidence 45667776532 345799999999999999999999974
No 125
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.56 E-value=2.8e-07 Score=57.69 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=46.6
Q ss_pred hhccceeeEEeecCC-CccEEEEecCCC---C-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534 9 SIFQMLSVGDFADDE-DIPVYIWYDSYP---T-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY 73 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~-p~p~~~w~k~~~---~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 73 (145)
..+..+.+-|.+.+. +...+.||+... . ...+.+.+|+.+..+ ......+|.|.+++.+|+|.|
T Consensus 4 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~~~D~G~Y 82 (105)
T cd00099 4 SEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD-SSKSSFTLTISSLQPEDSAVY 82 (105)
T ss_pred cCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe-ccCCEEEEEECCCCHHHCEEE
Confidence 455566666666654 555666666432 0 012456778876543 123578999999999999999
Q ss_pred EEEEEE
Q psy534 74 ECKVVF 79 (145)
Q Consensus 74 ~C~~~~ 79 (145)
.|.+..
T Consensus 83 ~C~v~~ 88 (105)
T cd00099 83 YCAVSL 88 (105)
T ss_pred EEEEec
Confidence 999974
No 126
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.56 E-value=3.8e-07 Score=54.77 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=43.1
Q ss_pred eeeEEeec-CCCccEEEEecCCCCccccc---ccc-eEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534 14 LSVGDFAD-DEDIPVYIWYDSYPTHEAEE---YKG-RISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN 81 (145)
Q Consensus 14 ~~~~~w~~-g~p~p~~~w~k~~~~~~~~~---~~~-R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 81 (145)
+.+.|... |+|++.|.||+++.+..... ..+ ++. ..++|.|......|.+.|.|+|.+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t--------~~s~L~~~~~~~Ddg~~~~C~A~n~a 66 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVS--------VSNTIRFPVDRKDDGAILSCEASHPA 66 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEE--------EEEEEEEEeeeccCCcEEEEEEEChh
Confidence 35779888 78999999999986432111 111 111 15679999999999999999998654
No 127
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.54 E-value=3.8e-07 Score=56.13 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=43.4
Q ss_pred hhccceeeEEeecCCCccEEEEecCCC--Cccc-ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYP--THEA-EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~--~~~~-~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
-.+..+.+-|-. +.|.|.+.||+... .... ....+|... ..++|.|.+++++|+|.|.|.+.+
T Consensus 9 ~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 9 VENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-------TERGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred ecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-------ecCeEEEeeCChhHCEEEEEEEEc
Confidence 346677888875 57889999998532 1100 011234433 256799999999999999999973
No 128
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.52 E-value=3.6e-07 Score=55.83 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=24.5
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 52 ~~~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 52 GAVLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred CCEEEECcCChhhCEEEEEEEEcCCC
Confidence 45899999999999999999999999
No 129
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.51 E-value=3e-07 Score=54.04 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 39 ~~L~i~~v~~~D~G~Y~C~a~N~~G 63 (73)
T cd04969 39 GSLEILNVTKSDEGKYTCFAENFFG 63 (73)
T ss_pred CeEEEccCChhHCEEEEEEEECCCC
Confidence 4899999999999999999999999
No 130
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.51 E-value=4.2e-07 Score=54.96 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=45.9
Q ss_pred hhhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+..+.+.|-+.+ .|.+.+.|++++... ..+.. ..++.|.|.+++.+|+|.|.|.+.+.
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~-----~~~~~-------~~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGL-----PSRAM-------DFNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred EcCCCCEEEEEEcCCCCCCcEEEEEECCCcC-----CCccc-------ccCCEEEECCCCHHHCEEEEEEEecc
Confidence 356778888998874 788999999987431 11111 22678999999999999999999753
No 131
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.50 E-value=4.2e-07 Score=55.62 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=29.5
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEeCeeE
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY-----PDLLVVLGSFH 140 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~~~ 140 (145)
..|.|.+++.+|+|.|+|.|.|.+| ..|.|....++
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 87 (90)
T cd05726 47 GDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVIAD 87 (90)
T ss_pred CeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeecccC
Confidence 3899999999999999999999999 55555554443
No 132
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.50 E-value=4.2e-07 Score=53.86 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|..|
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~a~N~~G 65 (76)
T cd05867 41 GALILTDVQPSDTAVYQCEARNRHG 65 (76)
T ss_pred CEEEECCCChhhCEEEEEEEECCCC
Confidence 4899999999999999999999999
No 133
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.50 E-value=9e-07 Score=54.92 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=48.3
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCcc-----cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHE-----AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~-----~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
++.++..+.+-|-..+.....+.|++-+...+ .+....|+..... .....+|.|++++.+|+|.|+|.+.
T Consensus 8 tv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~--~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 8 TVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF--SSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred EEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC--CCCEEEEEECcCCcccCEEEEEEEE
Confidence 45678888888888876556677775553211 1113456665431 2347789999999999999999986
No 134
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.49 E-value=4.9e-07 Score=54.65 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=46.2
Q ss_pred HhhhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 7 VKSIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+...+.++.+.|... +.+.+.+.|||++... .+ ......|.|.+++.+|+|.|+|.+.+.
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~---~~-----------~~~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAK---KY-----------SHSNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEc---cc-----------cCCCceEEECccCHHHCEEEEEEEEeC
Confidence 345688999999986 5677889999987421 11 122678999999999999999999764
No 135
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.47 E-value=3.4e-07 Score=54.74 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=43.2
Q ss_pred hhhccceeeEEeecCCCc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 8 KSIFQMLSVGDFADDEDI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
...+.++.+.|-..+.|. +.+.|||++... . ....+|.|.++ .+|+|.|+|++.+
T Consensus 12 v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l-~---------------~~~~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 12 IFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL-E---------------TTTNSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred eeCCCCEEEEEeCCCCCCCccEEEEECCEEe-e---------------ccCCeEEEeec-ccCCEEeEEECCC
Confidence 456778899999888775 469999998431 0 12678999999 9999999999964
No 136
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.46 E-value=7.5e-07 Score=54.95 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=24.9
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 56 DGSEMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred CCCEEEECCCChhhCEEEEEEEEcCCC
Confidence 445799999999999999999999999
No 137
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.45 E-value=6.4e-07 Score=52.78 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=24.4
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.+++.+|+|.|+|.|.|..|
T Consensus 40 ~~~L~i~~v~~~D~G~Y~C~A~N~~G 65 (76)
T cd04978 40 GGTLILSNVQPNDTAVYQCNASNVHG 65 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEEccCC
Confidence 45899999999999999999999999
No 138
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.42 E-value=9.3e-07 Score=53.77 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=24.5
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.+++.+|+|.|+|.|.|..|
T Consensus 52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 52 GAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CCEEEECCCCcccCEEEEEEEEECCC
Confidence 34899999999999999999999999
No 139
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.41 E-value=9.6e-07 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=24.4
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
...|.|.++.++|+|.|+|.|+|.+|
T Consensus 55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 55 SSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred eeEEEECCCChhhCEEEEEEEEcCCC
Confidence 35799999999999999999999999
No 140
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.41 E-value=1.1e-06 Score=52.73 Aligned_cols=67 Identities=9% Similarity=0.079 Sum_probs=42.8
Q ss_pred ceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCC-CCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534 13 MLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKES-PFGMASLNLTKIRESDQGWYECKVVFLN 81 (145)
Q Consensus 13 ~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 81 (145)
|+.+.|++.| .|.+.++|++++... ...... .....+.. ......|.|......|.|.|+|++.+..
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l-~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVL-DGATYS-KELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEc-cCceee-eeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence 5678999986 698999999987542 211111 11111100 0113568888888889999999997643
No 141
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.40 E-value=6.3e-07 Score=55.60 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=42.4
Q ss_pred hccceeeEEee----c-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 10 IFQMLSVGDFA----D-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 10 ~~~~~~~~~w~----~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+....++|-- . ..+.|.+.|||+..+ +.. ...+...+ .+...|.|.+|..+|+|.|+|++.+.
T Consensus 9 ~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~-l~~-~~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 9 TSTSGKLVCPDLSDFTINRTDVELQWYKDSVL-LDK-DNEKFYSL-----KGSTYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred cccCcEEECCCHHHcccCCCCCcEEEccCCEE-CcC-CCcceEec-----CCCCEEEEEEcChhhCEEEEEEEEEe
Confidence 44556667742 1 346789999999854 221 11222221 12567999999999999999999763
No 142
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.39 E-value=1.1e-06 Score=54.09 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=25.0
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+..|.|.+++++|+|.|+|.|.|.+|
T Consensus 53 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G 79 (91)
T cd05740 53 DNRTLTFNNVTRSDTGHYQCEASNEVS 79 (91)
T ss_pred CCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 445899999999999999999999999
No 143
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.37 E-value=1.2e-06 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=23.8
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|..|
T Consensus 40 ~~L~i~~~~~~D~G~Y~C~a~N~~G 64 (74)
T cd05764 40 GTLDILITTVKDTGSFTCIASNAAG 64 (74)
T ss_pred CEEEEEECChhhCEEEEEEEECCCC
Confidence 4899999999999999999999998
No 144
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.37 E-value=1.1e-06 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=24.0
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.++.++|+|.|+|.|.|.+|
T Consensus 52 ~~L~I~~~~~~D~G~Y~c~a~N~~G 76 (86)
T cd05894 52 SSFVIEGAEREDEGVYTITVTNPVG 76 (86)
T ss_pred EEEEECCCccCcCEEEEEEEEeCCC
Confidence 4799999999999999999999999
No 145
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.36 E-value=2.1e-06 Score=54.01 Aligned_cols=38 Identities=34% Similarity=0.443 Sum_probs=30.4
Q ss_pred ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..|.+|+.+... ..++.+|.|.+++.+|+|.|+|.+.+
T Consensus 52 ~~~~~R~~~~~~--~~~~~sL~I~~v~~~DsG~Y~C~v~~ 89 (106)
T cd05877 52 GSYQGRVFLRRA--HDLDASLVITDLRLEDYGRYRCEVID 89 (106)
T ss_pred cCccCcEEecCC--CCCcEEEEEccCChHHCEEEEEEEEe
Confidence 457788887431 24578999999999999999999964
No 146
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.35 E-value=1.4e-06 Score=59.87 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=51.0
Q ss_pred hhhccceeeEEeec-CCCccEEEEecCCC---------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534 8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYP---------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77 (145)
Q Consensus 8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~---------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~ 77 (145)
.+++.++.+.|-.. +...+.+.|+|... ..+.++|++|+.+.. ....+.+|.|.+|+++|+|.|.|.+
T Consensus 27 V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS--~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 27 VSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLS--KSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEec--cCCCcceEEEEeCChhhCeEEEEEE
Confidence 45667777778775 55667788877632 234566778888533 1245789999999999999999999
Q ss_pred EE
Q psy534 78 VF 79 (145)
Q Consensus 78 ~~ 79 (145)
..
T Consensus 105 ~t 106 (189)
T PHA02987 105 NT 106 (189)
T ss_pred Ee
Confidence 64
No 147
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.35 E-value=1.1e-06 Score=51.31 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=25.0
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G 60 (71)
T cd05876 34 NNKTLQLDNVLESDDGEYVCTAENSEG 60 (71)
T ss_pred CCCEEEEcccCHHhCEEEEEEEEcCCC
Confidence 345899999999999999999999999
No 148
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.35 E-value=2.1e-06 Score=50.87 Aligned_cols=36 Identities=33% Similarity=0.610 Sum_probs=28.7
Q ss_pred cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534 41 EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77 (145)
Q Consensus 41 ~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~ 77 (145)
.+.+|+.+... ...+..+|.|.+++.+|+|.|.|.+
T Consensus 46 ~~~~R~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 46 SYKGRVTISKD-TSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred ccCCcEEEEec-CcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 56788876543 2356899999999999999999964
No 149
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.34 E-value=1.3e-06 Score=55.83 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=48.8
Q ss_pred HHhhhccceeeEEeecC--CCccEEEEecCCC---Cc--c-----------cccccceEEEecCCCCCCeeeEEEcccCC
Q psy534 6 AVKSIFQMLSVGDFADD--EDIPVYIWYDSYP---TH--E-----------AEEYKGRISRVDKESPFGMASLNLTKIRE 67 (145)
Q Consensus 6 ~~~~~~~~~~~~~w~~g--~p~p~~~w~k~~~---~~--~-----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~ 67 (145)
..+..+..+.+-|-..+ .+.+.+.||+... +. + ...+.+|+.+..+ ......+|.|.+++.
T Consensus 8 ~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~~~~ 86 (116)
T cd04982 8 ITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKD-VGKSTSTLTIQNLEK 86 (116)
T ss_pred EEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEE-CCCCEEEEEEEECCH
Confidence 44566777888887766 5677788887531 10 0 1224567665322 112468899999999
Q ss_pred CCCEEEEEEEEE
Q psy534 68 SDQGWYECKVVF 79 (145)
Q Consensus 68 ~D~G~Y~C~~~~ 79 (145)
+|+|.|+|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999863
No 150
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.34 E-value=1.1e-06 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=23.8
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|..|
T Consensus 42 ~~L~I~~v~~~D~G~Y~C~a~N~~G 66 (78)
T cd05743 42 GTLTIRDVKESDQGAYTCEAINTRG 66 (78)
T ss_pred EEEEECCCChHHCEEEEEEEEecCC
Confidence 4799999999999999999999999
No 151
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.33 E-value=4.2e-07 Score=55.25 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=28.2
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEe
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY-----PDLLVVL 136 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~ 136 (145)
.+.|.|.+++.+|+|+|+|.|+|.++ .++.|..
T Consensus 46 ~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~ 83 (85)
T cd05853 46 AGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRG 83 (85)
T ss_pred CCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEec
Confidence 34899999999999999999999998 6666553
No 152
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.33 E-value=3.7e-06 Score=52.19 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=42.1
Q ss_pred hhhccceeeEEeecCC--CccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534 8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE 74 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 74 (145)
...+.++.+-|-..+. ....+.||+... +. ....+..|+.... .....+|.|.+++.+|+|.|.
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~---~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK---SGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc---cCCEEEEEECCCChhhCEEEE
Confidence 3456666777766543 344566766542 10 0012334555422 135778999999999999999
Q ss_pred EEEE
Q psy534 75 CKVV 78 (145)
Q Consensus 75 C~~~ 78 (145)
|.+.
T Consensus 80 C~~~ 83 (98)
T cd04984 80 CQVW 83 (98)
T ss_pred EEEc
Confidence 9885
No 153
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.32 E-value=1.6e-06 Score=53.77 Aligned_cols=70 Identities=21% Similarity=0.364 Sum_probs=45.2
Q ss_pred hhhccceeeEEeecC-CCccEEEEecCCCC----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534 8 KSIFQMLSVGDFADD-EDIPVYIWYDSYPT----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g-~p~p~~~w~k~~~~----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 76 (145)
+..+.++.+-|-+.. .....+.||+.... .....+.+|+.+..+ ...+..+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDD-PDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEec-CCCCEEEEEEcCCCHHHCEEEEEE
Confidence 344556666665543 23445566665421 112356788876432 345678999999999999999998
Q ss_pred EE
Q psy534 77 VV 78 (145)
Q Consensus 77 ~~ 78 (145)
+.
T Consensus 83 ~~ 84 (98)
T cd05716 83 VG 84 (98)
T ss_pred cc
Confidence 85
No 154
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.32 E-value=1.7e-06 Score=51.34 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
++..|.|.+++.+|+|.|+|.|.|..|
T Consensus 39 ~~~~l~i~~v~~~D~G~Y~C~A~N~~G 65 (76)
T cd05868 39 DGDTIIFSKVQERSSAVYQCNASNEYG 65 (76)
T ss_pred cCCEEEECCCCHhhCEEEEEEEEcCCC
Confidence 345899999999999999999999999
No 155
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.31 E-value=2.2e-06 Score=54.37 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=46.9
Q ss_pred HHhhhccceeeEEeecCCCccEEEEecCCC---Cc-c----------c-ccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534 6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH-E----------A-EEYKGRISRVDKESPFGMASLNLTKIRESDQ 70 (145)
Q Consensus 6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~-~----------~-~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~ 70 (145)
..+..+.++.+-|-..+ +.+.+.|||... +. + . ....+|+..... .....+|.|.+++.+|+
T Consensus 8 ~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 8 LIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP--SLTRSSLTIKSAEPEDS 84 (110)
T ss_pred eEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc--CCCccEEEECCCChhhC
Confidence 34567778888887777 667888988642 10 0 0 011345443221 12467899999999999
Q ss_pred EEEEEEEEE
Q psy534 71 GWYECKVVF 79 (145)
Q Consensus 71 G~Y~C~~~~ 79 (145)
|.|+|.+..
T Consensus 85 g~Y~Ca~~~ 93 (110)
T cd05899 85 AVYLCASSL 93 (110)
T ss_pred EEEEEEeeC
Confidence 999999863
No 156
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.30 E-value=1.5e-06 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=23.0
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|.+++.+|+|.|+|.|.|.+|
T Consensus 38 ~l~i~~v~~~D~G~Y~C~A~N~~G 61 (71)
T cd05723 38 NLQVLGLVKSDEGFYQCIAENDVG 61 (71)
T ss_pred CEEEEcCCcccCEEEEEEEEcCCC
Confidence 688999999999999999999999
No 157
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.29 E-value=2e-06 Score=54.02 Aligned_cols=70 Identities=20% Similarity=0.325 Sum_probs=45.8
Q ss_pred hhccceeeEEeec-CCCccEEEEecCCC----------------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534 9 SIFQMLSVGDFAD-DEDIPVYIWYDSYP----------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG 71 (145)
Q Consensus 9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~----------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G 71 (145)
..+.++.+-|... ......+.|++... ......+.+|+.+..+ ....+.+|.|.+++.+|+|
T Consensus 14 ~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~i~~l~~~DsG 92 (114)
T PF07686_consen 14 QEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN-GSQNNFSLTIKNLQPSDSG 92 (114)
T ss_dssp ETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE-TTTTEEEEEESSESGGGEE
T ss_pred ecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec-ccCCeEEEEECCCCcCcCE
Confidence 3455566666666 44555666665322 1123446677776443 2355789999999999999
Q ss_pred EEEEEEEE
Q psy534 72 WYECKVVF 79 (145)
Q Consensus 72 ~Y~C~~~~ 79 (145)
.|.|.+..
T Consensus 93 ~Y~C~v~~ 100 (114)
T PF07686_consen 93 TYFCQVST 100 (114)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999964
No 158
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.29 E-value=3.1e-06 Score=50.25 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=24.2
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.+++.+|+|.|.|.|.|.+|
T Consensus 37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G 62 (77)
T cd05760 37 ERTLTLRSAGPDDSGLYYCCAHNAFG 62 (77)
T ss_pred CCEEEEeeCCcccCEEEEEEEEeCCC
Confidence 34899999999999999999999998
No 159
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.29 E-value=1.6e-06 Score=50.37 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=24.5
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
...|.|.+++.+|+|.|+|.|.|.+|
T Consensus 35 ~~~L~I~~~~~~D~G~Y~C~a~N~~G 60 (69)
T cd05746 35 EGYLAIRDVGVADQGRYECVARNTIG 60 (69)
T ss_pred CCEEEECcCChhhCEEEEEEEECCCC
Confidence 44899999999999999999999999
No 160
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.28 E-value=2.4e-06 Score=50.86 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G 71 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGG 71 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCc
Confidence 4899999999999999999999999
No 161
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.28 E-value=1.6e-06 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|..|
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 51 GDLRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred CEEEEeeCCHHHCEEEEEEEECCCC
Confidence 4899999999999999999999999
No 162
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.28 E-value=2.3e-06 Score=54.79 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=47.5
Q ss_pred HhhhccceeeEEeecCC-CccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534 7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE 74 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 74 (145)
.+..+..+.+-|...+. ....+.||+...- .....+++|+.+..+ ....+.+|.|.+++.+|+|.|+
T Consensus 10 ~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~~~~~Dsg~Y~ 88 (116)
T cd07706 10 SVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ-KAQKSISLTISALQLEDSAKYF 88 (116)
T ss_pred EEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe-ccCCEEEEEECCCCHHHCEEEE
Confidence 35566777777776643 3455777765310 012245678876421 2345789999999999999999
Q ss_pred EEEEE
Q psy534 75 CKVVF 79 (145)
Q Consensus 75 C~~~~ 79 (145)
|.+..
T Consensus 89 C~~~~ 93 (116)
T cd07706 89 CALST 93 (116)
T ss_pred EEEEC
Confidence 99874
No 163
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.28 E-value=2.7e-06 Score=51.21 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=24.3
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLYP 130 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~ 130 (145)
..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 51 GNLLIAEARKSDEGTYKCVATNMVGE 76 (86)
T ss_pred CEEEEeECCcccCEEEEEEEEeccCc
Confidence 48999999999999999999999983
No 164
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.27 E-value=6e-06 Score=50.20 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=40.4
Q ss_pred cceeeEEeecCCC--ccEEEEecCCCCcccccccc--eEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 12 QMLSVGDFADDED--IPVYIWYDSYPTHEAEEYKG--RISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 12 ~~~~~~~w~~g~p--~p~~~w~k~~~~~~~~~~~~--R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.++.+.|-+.+.+ ...+.|...+.......... |..... .....+.|.|.+++.+|+|.|.|.+.+
T Consensus 2 e~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n 71 (86)
T cd05862 2 EKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQE--HTELSSTLTIENVTLSDLGRYTCTASS 71 (86)
T ss_pred CcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccc--cceeeeEEEEecCCcccCEEEEEEEee
Confidence 4677889887654 55778966543211100001 111100 112367899999999999999999975
No 165
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.26 E-value=2.8e-06 Score=49.27 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=39.6
Q ss_pred eeeEEeecCCC-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 14 LSVGDFADDED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 14 ~~~~~w~~g~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+.+.|.+.+.+ .+.+.|+... .. ....+... .....+|.|.++..+|.|.|.|.|.+
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~-~~---~~~~~~~~-----~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSN-PS---FNSNSRGS-----SSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEE-EE---EEEEEEEE-----EEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecC-Cc---eeeeeeec-----cceeeEEEEccCCHHhCcEEEEEEEC
Confidence 78889999776 8899999111 10 01111111 12388899999999999999999864
No 166
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.25 E-value=1.3e-06 Score=50.75 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=24.9
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+..|.|.++..+|+|.|+|.|+|..|
T Consensus 29 ~~~~L~i~~v~~~D~G~YtC~a~N~~g 55 (67)
T cd05863 29 SQHSLQIKDVTEASAGTYTLVLWNSAA 55 (67)
T ss_pred CcCEEEECCCCHHHCEEEEEEEEECCc
Confidence 345899999999999999999999998
No 167
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.23 E-value=3.6e-06 Score=53.01 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=45.7
Q ss_pred HHHhhhccceeeEEeecCCC-ccEEEEecCCC---C--cc------cccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534 5 FAVKSIFQMLSVGDFADDED-IPVYIWYDSYP---T--HE------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGW 72 (145)
Q Consensus 5 ~~~~~~~~~~~~~~w~~g~p-~p~~~w~k~~~---~--~~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~ 72 (145)
+.+++.+..+.+-|-+.+.. ...+.||+... . .+ ......|+.... .....+|.|.+++.+|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG---SGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec---cCCEEEEEECCCChHHCEE
Confidence 34556778888888776554 56688887541 0 00 011123444321 2346789999999999999
Q ss_pred EEEEEE
Q psy534 73 YECKVV 78 (145)
Q Consensus 73 Y~C~~~ 78 (145)
|+|.+.
T Consensus 86 Y~Ca~~ 91 (106)
T cd04980 86 YYCQQY 91 (106)
T ss_pred EEEEEe
Confidence 999885
No 168
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.23 E-value=1.6e-06 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=23.7
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.++..+|+|.|+|.|.|.+|
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G 71 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYG 71 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCC
Confidence 3799999999999999999999999
No 169
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.22 E-value=2.2e-06 Score=49.74 Aligned_cols=26 Identities=35% Similarity=0.671 Sum_probs=24.4
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.+++.+|+|.|+|.|.|..|
T Consensus 35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G 60 (71)
T cd05731 35 NKTLKIDNVSEEDDGEYRCTASNSLG 60 (71)
T ss_pred CCEEEECCCCHHHCEEEEEEEEeCCc
Confidence 34899999999999999999999999
No 170
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.22 E-value=3.5e-06 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=23.7
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 58 ~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 58 ASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred EEEEEccCChhhCEEEEEEEEECCC
Confidence 3799999999999999999999999
No 171
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.22 E-value=2.8e-06 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=23.7
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|..|
T Consensus 48 ~~L~i~~v~~~D~G~Y~C~a~N~~G 72 (82)
T cd05856 48 WTLSLKNLKPEDSGKYTCHVSNRAG 72 (82)
T ss_pred EEEEEccCChhhCEEEEEEEEcCCc
Confidence 4799999999999999999999999
No 172
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.21 E-value=5.9e-06 Score=51.84 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=33.6
Q ss_pred cEEEEecCCCCccccc---cc-ceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 26 PVYIWYDSYPTHEAEE---YK-GRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 26 p~~~w~k~~~~~~~~~---~~-~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..+.|||++.....+. +. .|++. ....|.|.++..+|+|.|.|++.+
T Consensus 41 ~~v~WyK~~~~~~~~~~~~~~~~Ri~~-------~~~~Lwf~Pa~~eDSG~Y~C~~rN 91 (104)
T cd05896 41 LSLMWYKSSGDGEEPIEIIFDGVRMSK-------EEDSIWFRPAELQDSGLYTCVLRN 91 (104)
T ss_pred ceEEEEECCCCCCCCCcccccceeEEE-------eCCEEEEEeCChhhCeEEEEEECC
Confidence 4789999963211111 21 35553 378899999999999999999975
No 173
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.21 E-value=1.2e-06 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=23.4
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+|.|.+++.+|+|.|+|.|.|.+|
T Consensus 42 ~L~I~~~~~~D~G~Y~C~A~N~~G 65 (75)
T cd05892 42 TLLIKNVNKKDAGWYTVSAVNEAG 65 (75)
T ss_pred EEEECCCChhhCEEEEEEEEcCcC
Confidence 799999999999999999999999
No 174
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.20 E-value=3.5e-06 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=24.0
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.+++.+|+|.|+|.|.|..|
T Consensus 44 ~~~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 44 GEEVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred CCEEEECCCChhhCEEEEEEEeCCCC
Confidence 34899999999999999999999988
No 175
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.20 E-value=2.3e-06 Score=50.47 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=24.7
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+..|.|.+++.+|+|.|+|.|.|..|
T Consensus 38 ~~~~L~I~~~~~~D~G~Y~C~A~N~~G 64 (75)
T cd05763 38 EDDVFFIVDVKIEDTGVYSCTAQNTAG 64 (75)
T ss_pred CCCEEEEeeCCcccCEEEEEEEEcCCC
Confidence 344899999999999999999999998
No 176
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.20 E-value=1.4e-06 Score=50.50 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=24.3
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 34 ~~~L~I~~v~~~D~G~Y~C~a~N~~G 59 (69)
T cd05725 34 DKSLKIRNVTAGDEGSYTCEAENMVG 59 (69)
T ss_pred CCEEEECcCChhHCEEEEEEEEcCCC
Confidence 34899999999999999999999999
No 177
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.20 E-value=1.9e-06 Score=52.29 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+.|.|.+++.+|+|.|+|.|.|.+|
T Consensus 47 ~~L~I~~v~~~D~G~YtC~A~n~~g 71 (85)
T cd05854 47 GDLVIVNAQLSHAGTYTCTAQTVVD 71 (85)
T ss_pred eEEEEccCChhhCeEEEEEEecCCC
Confidence 4899999999999999999999999
No 178
>PHA03376 BARF1; Provisional
Probab=98.20 E-value=6.8e-06 Score=56.60 Aligned_cols=64 Identities=11% Similarity=-0.028 Sum_probs=43.7
Q ss_pred ceeeEEeecCCC-cc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 13 MLSVGDFADDED-IP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 13 ~~~~~~w~~g~p-~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+-+.+.|+|..| .+ .+.+...+.....-++++|..++.+ .++.+|.|.+++.+|.|.|+|.+..
T Consensus 42 ~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~---~gnvsLvI~~l~lSDdGtY~C~fQk 108 (221)
T PHA03376 42 PEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS---ANTFFLVVTAANISHDGNYLCRMKL 108 (221)
T ss_pred CceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEec---CCeEEEEEEeeeecCCceEEEEEEc
Confidence 456677888444 22 2333333222233468889888764 3799999999999999999999954
No 179
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.19 E-value=7e-06 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=23.5
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 51 ~~l~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05857 51 WSLIMESVVPSDKGNYTCVVENEYG 75 (85)
T ss_pred eEEEEccCCcccCEEEEEEEEeCCC
Confidence 3799999999999999999999999
No 180
>smart00409 IG Immunoglobulin.
Probab=98.18 E-value=1.1e-05 Score=47.31 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=48.2
Q ss_pred hhhccceeeEEeecCCCccEEEEecC-CCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDS-YPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~-~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
...+.++.+.|-+.+.+.+.+.|+++ ... +. ...+..+... ....+|.|.+++.+|+|.|.|.+.
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~-v~--~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~v~ 71 (86)
T smart00409 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKL-LA--ESGRFSVSRS---GSNSTLTISNVTPEDSGTYTCAAT 71 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEE-cC--CCCcEEEEEc---CCeeEEEEEeeccccCeEEEEEEE
Confidence 34577888999998888889999988 432 21 3345554332 125789999999999999999997
No 181
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.18 E-value=1.1e-05 Score=47.31 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=48.2
Q ss_pred hhhccceeeEEeecCCCccEEEEecC-CCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534 8 KSIFQMLSVGDFADDEDIPVYIWYDS-YPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~p~p~~~w~k~-~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
...+.++.+.|-+.+.+.+.+.|+++ ... +. ...+..+... ....+|.|.+++.+|+|.|.|.+.
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~-v~--~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~v~ 71 (86)
T smart00410 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKL-LA--ESGRFSVSRS---GSNSTLTISNVTPEDSGTYTCAAT 71 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEE-cC--CCCcEEEEEc---CCeeEEEEEeeccccCeEEEEEEE
Confidence 34577888999998888889999988 432 21 3345554332 125789999999999999999997
No 182
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.18 E-value=4.2e-06 Score=51.61 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=23.8
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.++..+|+|.|+|.|.|..|
T Consensus 56 ~~L~I~~v~~~D~G~Y~C~A~N~~G 80 (92)
T cd05866 56 SRLTIYNANIEDAGIYRCQATDAKG 80 (92)
T ss_pred eEEEEecCChHHCEEEEEEEEcCCC
Confidence 3799999999999999999999998
No 183
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.17 E-value=2.8e-06 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=23.4
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|.+++.+|+|.|+|.|+|.+|
T Consensus 47 ~L~I~~~~~~D~G~YtC~A~N~~G 70 (81)
T cd04971 47 CLQFDNPTHVNNGNYTLVASNEYG 70 (81)
T ss_pred EEEECCCCcccCeEEEEEEEeCCC
Confidence 799999999999999999999999
No 184
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.16 E-value=4.9e-06 Score=50.81 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=23.8
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|.|.|+|.|.|.+|
T Consensus 56 ~~L~I~~v~~~D~g~Y~C~A~N~~G 80 (90)
T cd04972 56 YNLQLSNITSETQTTVTCTAENPVG 80 (90)
T ss_pred EEEEEecCCcccCEEEEEEEECCCC
Confidence 4799999999999999999999999
No 185
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.15 E-value=2.4e-06 Score=52.31 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=23.8
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccC
Confidence 4799999999999999999999999
No 186
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.15 E-value=9.1e-06 Score=53.67 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.8
Q ss_pred eeEEEcccCCCCCEEEEEEEEE
Q psy534 58 ASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 58 ~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.+|.|.+++.+|+|.|.|.+.+
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~ 22 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVST 22 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEc
Confidence 4799999999999999999854
No 187
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.14 E-value=1.4e-05 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=23.3
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|.+++.+|+|.|+|.|.|.+|
T Consensus 59 ~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 59 SLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred EEEECCCChhhCEEEEEEEEeCCC
Confidence 799999999999999999999999
No 188
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.13 E-value=1.8e-06 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.201 Sum_probs=23.2
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|.+++.+|+|.|+|.|.|.+|
T Consensus 42 ~L~I~~v~~~D~G~Y~C~A~N~~G 65 (75)
T cd05893 42 CLLIQGATKEDAGWYTVSAKNEAG 65 (75)
T ss_pred EEEECCCCHHHCEEEEEEEEcCCC
Confidence 599999999999999999999999
No 189
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.13 E-value=1.8e-06 Score=50.57 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=24.8
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+..|.|.++..+|+|.|+|.|.|.+|
T Consensus 32 ~~~~L~I~~v~~~D~G~YtC~a~N~~G 58 (70)
T cd05864 32 RGVHLTIYEVTEKDAGNYTVVLTNPIT 58 (70)
T ss_pred cCCEEEECcCCHHHCEEEEEEEEECCC
Confidence 345899999999999999999999998
No 190
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.13 E-value=2.5e-06 Score=51.54 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=24.2
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+.|.|.+++.+|+|.|+|.|.|.+|
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g 71 (85)
T cd04970 46 NGDLMIRNAQLKHAGKYTCTAQTVVD 71 (85)
T ss_pred cceEEEccCCHHhCeeeEEEEecCCC
Confidence 34899999999999999999999998
No 191
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.13 E-value=2.2e-05 Score=48.98 Aligned_cols=73 Identities=16% Similarity=0.092 Sum_probs=50.6
Q ss_pred HhhhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCC-CCeeeEEEcccCCCC-CEEEEEEEEEe
Q psy534 7 VKSIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESD-QGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~-~~~~sL~I~~v~~~D-~G~Y~C~~~~~ 80 (145)
.+..+..+.+.|-+.+.|.| .+.|..++. .++....+|+.+.+.... .....|.|.++..+| .|.|.|.|.|.
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~-~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPDRIAWAWKEN-VLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCcEEEEEEccc-cccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 34567788899999888776 457766553 233334467766543222 236779999998878 79999999863
No 192
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.12 E-value=1.6e-06 Score=52.98 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCC
Confidence 4799999999999999999999999
No 193
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.12 E-value=4.8e-06 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=23.4
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|.++..+|+|.|+|+|+|.+|
T Consensus 45 ~L~i~~~~~~D~G~YtC~A~N~~G 68 (79)
T cd05855 45 CLQLDNPTHLNNGIYTLVAKNEYG 68 (79)
T ss_pred EEEECCCCcccCEEEEEEEEcCCc
Confidence 799999999999999999999999
No 194
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.11 E-value=6.3e-06 Score=49.94 Aligned_cols=26 Identities=35% Similarity=0.645 Sum_probs=24.1
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
...|.|.+++.+|+|.|+|.|+|..|
T Consensus 55 ~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 55 SSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSESGGGSEEEEEEEEETTE
T ss_pred eeEEccCCCChhhCEEEEEEEEECCC
Confidence 35799999999999999999999987
No 195
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.11 E-value=1.2e-05 Score=49.38 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=45.6
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+...+..+.+.|... .+...+.|+|++.... . .+.. .....+.+.|.+|+.+|+|.|+|+..+.
T Consensus 12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~---~-~~~~-----~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFA---V-KKPP-----EPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ccCCCCcEEEEEecC-CCCCEEEEEECCCCcc---c-cccC-----CCceeEEEEccCCChhHCEEEEEEEECC
Confidence 345778899999776 5677899999875311 1 1111 1133778999999999999999999753
No 196
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.11 E-value=3.3e-06 Score=49.60 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=24.3
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
...|.|.+++.+|+|.|+|.|.|.+|
T Consensus 39 ~~~L~I~~~~~~D~G~Y~C~a~N~~G 64 (74)
T cd05748 39 STSLVIKNAERSDSGKYTLTLKNPAG 64 (74)
T ss_pred eEEEEECCCCcCcCEEEEEEEECCCc
Confidence 34799999999999999999999999
No 197
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.10 E-value=9.8e-06 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 59 ~~L~i~~~~~~D~G~Y~C~a~N~~G 83 (92)
T cd05747 59 STFEISKVQMSDEGNYTVVVENSEG 83 (92)
T ss_pred eEEEECCCCcccCEeEEEEEEcCCC
Confidence 4899999999999999999999999
No 198
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.09 E-value=3.9e-06 Score=49.09 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=24.7
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+..|.|.+++.+|+|.|+|.|.|..|
T Consensus 33 ~~~~L~I~~v~~~D~G~YtC~a~N~~g 59 (71)
T cd04976 33 SGHSLTIKDVTEEDAGNYTVVLTNKQA 59 (71)
T ss_pred CCCEEEECcCCHHHCEEEEEEEEcCCc
Confidence 345899999999999999999999998
No 199
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.07 E-value=7e-06 Score=49.56 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.8
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.+++.+|+|.|+|.|.+..|
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred CceEEECccCHHHCEEEEEEEEeCCc
Confidence 34799999999999999999999987
No 200
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.07 E-value=1.4e-05 Score=49.30 Aligned_cols=25 Identities=44% Similarity=0.607 Sum_probs=22.4
Q ss_pred cEEEEcccC-CCCCeeeEEEEecCCC
Q psy534 105 TELRISNIR-SQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g 129 (145)
..|.|.++. .+|+|.|+|.|.|.+|
T Consensus 58 g~L~i~~~~~~~D~G~Y~C~A~N~~G 83 (94)
T cd05848 58 GNLIISNPSEVKDSGRYQCLATNSIG 83 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCCC
Confidence 389998885 6999999999999999
No 201
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.06 E-value=4.1e-06 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=23.3
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+|.|.+++.+|+|.|+|.|.|.+|
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G 65 (75)
T cd05744 42 CLLIQNANKEDAGWYTVSAVNEAG 65 (75)
T ss_pred EEEECCCCcccCEEEEEEEEcCCC
Confidence 699999999999999999999999
No 202
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.06 E-value=3.7e-06 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=24.0
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|+|..|
T Consensus 65 ~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 65 SELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred EEEEEeecCHhhCeeEEEEEECCCc
Confidence 5799999999999999999999999
No 203
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.05 E-value=1e-05 Score=48.34 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
.+..|.|.++ .+|+|.|+|.|.|..
T Consensus 45 ~~~~l~i~~~-~~dsG~Y~C~a~~~~ 69 (78)
T cd05752 45 TTNSYRIRAA-NNDSGEYRCQTQGSS 69 (78)
T ss_pred cCCeEEEeec-ccCCEEeEEECCCCc
Confidence 4458999999 999999999999864
No 204
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.05 E-value=5.3e-06 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=23.3
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 60 ~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 60 STLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred eEEEEeccChhhCEEEEEEEEcCCC
Confidence 4899999999999999999999984
No 205
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.02 E-value=8.4e-06 Score=47.97 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=24.2
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLYP 130 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~ 130 (145)
..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 38 g~L~i~~~~~~D~G~Y~C~a~N~~G~ 63 (74)
T cd05738 38 GALQIENSEESDQGKYECVATNSAGT 63 (74)
T ss_pred cEEEECCCChhhCEEEEEEEECCCCc
Confidence 37999999999999999999999994
No 206
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.01 E-value=5.8e-06 Score=50.85 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=23.4
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+|.|.+++.+|+|.|+|.|.|..|
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 57 STLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEEEEecCCcccCEEEEEEEEcCCC
Confidence 4799999999999999999999976
No 207
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.01 E-value=1.3e-05 Score=47.26 Aligned_cols=27 Identities=48% Similarity=0.835 Sum_probs=24.7
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+..|.|.+++.+|+|.|+|.|.|..|
T Consensus 37 ~~~~l~I~~~~~~D~G~Y~C~a~N~~G 63 (76)
T cd05736 37 NGSELHISNVRYEDTGAYTCIAKNEAG 63 (76)
T ss_pred CCCEEEECcCCcccCEEEEEEEEcCCC
Confidence 445799999999999999999999999
No 208
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.00 E-value=3.5e-05 Score=43.02 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=41.9
Q ss_pred eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.+.|.+.+.+.+.+.|++++......... ..............|.|.+++.+|.|.|.|.+..
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 64 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASN 64 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEec
Confidence 46788888778889999887432111110 0111111234478899999999999999999864
No 209
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.99 E-value=3.4e-05 Score=42.70 Aligned_cols=27 Identities=33% Similarity=0.653 Sum_probs=23.8
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
....|.|.+++.+|+|.|+|.+.|..|
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 344899999999999999999999875
No 210
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.98 E-value=7.3e-06 Score=49.35 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=23.6
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|..|
T Consensus 49 s~L~I~~v~~~DsG~Y~C~a~n~~~ 73 (84)
T cd05742 49 STLTIPNATLKDSGTYTCAASSGTM 73 (84)
T ss_pred EEEEECCCChhhCEEEEEEEccCCC
Confidence 3799999999999999999999998
No 211
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.98 E-value=7.1e-06 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|.+|
T Consensus 64 ~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 64 SSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred eEEEEeeCCcCCCEEEEEEEeccCC
Confidence 4799999999999999999999999
No 212
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.97 E-value=1.2e-05 Score=48.41 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=24.3
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.+++.+|+|.|+|.|.|..|
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g 76 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLD 76 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCC
Confidence 34899999999999999999999998
No 213
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.97 E-value=3.1e-05 Score=47.74 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=22.5
Q ss_pred cEEEEcccC-CCCCeeeEEEEecCCCC
Q psy534 105 TELRISNIR-SQDIGDYTCLATHVLYP 130 (145)
Q Consensus 105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g~ 130 (145)
+.|.|.++. .+|+|.|+|.|.|.+|.
T Consensus 58 g~L~I~~~~~~~D~G~Y~C~A~N~~G~ 84 (94)
T cd05850 58 GNLVINNPQKARDAGSYQCLAINRCGT 84 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCcCc
Confidence 379998865 69999999999999993
No 214
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=97.96 E-value=8e-06 Score=50.26 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=24.2
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLYP 130 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~ 130 (145)
..|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~ 87 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGG 87 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCC
Confidence 37999999999999999999999993
No 215
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.94 E-value=1.7e-05 Score=46.72 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=24.5
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCCCc
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLYPD 131 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 131 (145)
..|.|.+++.+|+|.|+|.|.|..|..
T Consensus 44 ~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 44 SELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred EEEEECcCCcccCEEEEEEEEeCCCce
Confidence 479999999999999999999999843
No 216
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.94 E-value=7.9e-06 Score=51.22 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|..|
T Consensus 65 s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 65 SKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred cEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 4899999999999999999999998
No 217
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=97.93 E-value=9.8e-06 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=24.1
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLYP 130 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~ 130 (145)
..|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~ 88 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQ 88 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCC
Confidence 37999999999999999999999993
No 218
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.93 E-value=1.2e-05 Score=47.76 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=23.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+|.|.++..+|+|.|.|.|.|.+|
T Consensus 44 ~~L~I~~v~~~D~G~Y~C~a~N~~G 68 (79)
T cd05734 44 GSLLIKHVLEEDSGYYLCKVSNDVG 68 (79)
T ss_pred CeEEECcCCcccCEEEEEEEEeCCC
Confidence 4899999999999999999999999
No 219
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.90 E-value=1.3e-05 Score=46.91 Aligned_cols=26 Identities=35% Similarity=0.707 Sum_probs=24.2
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLYP 130 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~ 130 (145)
..|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 43 ~~L~I~~~~~~D~G~Y~C~a~N~~G~ 68 (75)
T cd05750 43 SELQINKAKLADSGEYTCVVENILGN 68 (75)
T ss_pred EEEEEccCCcccCeEEEEEEEEcCCc
Confidence 47999999999999999999999994
No 220
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=97.90 E-value=3.4e-05 Score=48.94 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=23.1
Q ss_pred cEEEEcccC-CCCCeeeEEEEecCCC
Q psy534 105 TELRISNIR-SQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++ .+|.|.|+|.|.|.+|
T Consensus 69 s~L~I~~v~~~~D~G~Y~C~A~N~~G 94 (109)
T cd05773 69 SILTIINVSAALDYALFTCTAHNSLG 94 (109)
T ss_pred eEEEECcCCccCCCEEEEEEEEeCCc
Confidence 479999997 5999999999999999
No 221
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.90 E-value=3.5e-05 Score=47.45 Aligned_cols=28 Identities=36% Similarity=0.633 Sum_probs=25.1
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLYP 130 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 130 (145)
.+..|.|.+++.+|+|.|+|.|.|..+.
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 4458999999999999999999999873
No 222
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.90 E-value=4.6e-05 Score=48.10 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=42.4
Q ss_pred hhhccceeeEEeecCC-CccEEEEecCCCC--ccc----------------ccc-cceEEEecCCCCCCeeeEEEcccCC
Q psy534 8 KSIFQMLSVGDFADDE-DIPVYIWYDSYPT--HEA----------------EEY-KGRISRVDKESPFGMASLNLTKIRE 67 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~--~~~----------------~~~-~~R~~~~~~~~~~~~~sL~I~~v~~ 67 (145)
++++.++.+.|-..+. ....+.||+...- ... .++ ..|++... ........|.|.+++.
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~-~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV-TSDSSRYRLHINRVKP 81 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE-ECCCCEEEEEECCCCH
Confidence 4567778888877653 3456788876421 000 011 23443311 1122356799999999
Q ss_pred CCCEEEEEEEE
Q psy534 68 SDQGWYECKVV 78 (145)
Q Consensus 68 ~D~G~Y~C~~~ 78 (145)
+|+|.|+|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999874
No 223
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.90 E-value=4.6e-05 Score=44.28 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|.++. |+|.|+|.|.|.+|
T Consensus 39 ~L~i~~~~--d~G~Y~C~A~N~~G 60 (69)
T cd05739 39 VLELTNIY--ESANYTCVAISSLG 60 (69)
T ss_pred EEEEeccc--cCeeEEEEEEeCCC
Confidence 68888874 79999999999999
No 224
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.90 E-value=1.9e-05 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=23.4
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+.|.+.+|+.+|+|.|+|.|+|.+.
T Consensus 60 G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 60 GNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CcEEEeecCHhhCceeEEEEEeccc
Confidence 4899999999999999999999876
No 225
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.89 E-value=1.6e-05 Score=48.36 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=23.4
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|+|..|
T Consensus 50 s~L~I~~~~~~DsG~Y~C~a~n~~~ 74 (86)
T cd05862 50 STLTIENVTLSDLGRYTCTASSGQM 74 (86)
T ss_pred eEEEEecCCcccCEEEEEEEeecce
Confidence 3799999999999999999999887
No 226
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.89 E-value=7.3e-05 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=20.9
Q ss_pred CeeeEEEcccCCCCCEEEEEEEE
Q psy534 56 GMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 56 ~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
...+|.|.+++.+|+|.|.|.+.
T Consensus 67 ~~~~L~I~~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 67 NSFVLTLKNFQKENEGYYFCSVA 89 (104)
T ss_pred CEEEEEECCCCHHHCEEEEEEEc
Confidence 46789999999999999999875
No 227
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.89 E-value=2.1e-05 Score=46.18 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=42.3
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..+.++.+.|...+.|.+.+.|++++.. +. - ....|.|.++..+|+|.|.|.+.+
T Consensus 12 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~-~~--------~-------~~~~~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 12 EEGDSVTLTCSVSGNPPPQVQWYKNGSP-IN--------S-------SQNGLFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp ETTSEEEEEEEEESSSSSEEEEEETTEE-EE--------E-------ESSEEEESSEEGGGTEEEEEEEEE
T ss_pred eCCCcEEEEEEEEcccceeeeeeeeeee-ee--------e-------eeeeeeeeeeccccCEEEEEEEEe
Confidence 4577889999999998899999997632 11 0 011277889999999999999975
No 228
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.88 E-value=3.4e-05 Score=47.54 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.7
Q ss_pred cEEEEcccC-CCCCeeeEEEEecCCC
Q psy534 105 TELRISNIR-SQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g 129 (145)
+.|.|.++. .+|+|.|+|.|+|.+|
T Consensus 57 g~L~I~~~~~~~D~G~Y~C~A~N~~G 82 (93)
T cd05849 57 GNLVINNPDKYKDAGRYVCIVSNIYG 82 (93)
T ss_pred CEEEECcCCcCCCCEEEEEEEEeCcc
Confidence 489999885 6899999999999999
No 229
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.87 E-value=3.8e-05 Score=46.61 Aligned_cols=59 Identities=8% Similarity=-0.018 Sum_probs=42.3
Q ss_pred hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534 9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
..+..+.+-|-.++. ...+.|++++.. +. ...|+... ...|.|.+++.+|+|.|.|.+.
T Consensus 9 ~~g~~v~L~C~~~s~-~A~v~W~~ng~~-l~--~~~r~~~~-------~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 9 APGADVVLPCQLRSN-LASPVWLFNGTP-LN--AQFSYRVG-------TDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred ecCCCEEEECCCCCC-CccEEEEECCcc-cC--CCcceEEe-------CCCCEEEECCHhhCEEEEEEEe
Confidence 456677777777766 458999999864 22 22455432 4457899999999999999985
No 230
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.86 E-value=6.7e-05 Score=45.82 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=22.7
Q ss_pred cEEEEcccC-CCCCeeeEEEEecCCCC
Q psy534 105 TELRISNIR-SQDIGDYTCLATHVLYP 130 (145)
Q Consensus 105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g~ 130 (145)
..|.|.++. .+|+|.|+|.|+|.+|.
T Consensus 58 ~~L~i~~~~~~~d~G~Y~C~a~N~~G~ 84 (91)
T cd04967 58 GNLVISNPSKAKDAGRYQCLASNIVGT 84 (91)
T ss_pred CEEEEecCCccCCCEEEEEEEEcCCCE
Confidence 378998887 48999999999999993
No 231
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.85 E-value=4.5e-05 Score=43.19 Aligned_cols=18 Identities=50% Similarity=0.962 Sum_probs=17.4
Q ss_pred EEEcccCCCCCeeeEEEE
Q psy534 107 LRISNIRSQDIGDYTCLA 124 (145)
Q Consensus 107 L~i~~v~~~d~G~Y~C~a 124 (145)
|.|.+++.+|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999986
No 232
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.83 E-value=6.1e-05 Score=46.35 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEccc-----CCCCCeeeEEEEecC-CC
Q psy534 106 ELRISNI-----RSQDIGDYTCLATHV-LY 129 (145)
Q Consensus 106 ~L~i~~v-----~~~d~G~Y~C~a~n~-~g 129 (145)
.|.|.++ +++|+|.|+|.|.|. .|
T Consensus 55 ~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G 84 (95)
T cd05722 55 SLLITSVVHSKHNKPDEGFYQCVAQNDSLG 84 (95)
T ss_pred eEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence 6777776 589999999999999 88
No 233
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.80 E-value=2.3e-05 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=24.3
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.++..+|+|.|+|.+.|..|
T Consensus 59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 59 KDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred CCeEEEccCCcccCeEEEEEEcCCCc
Confidence 45899999999999999999999998
No 234
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.77 E-value=7e-05 Score=45.98 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.0
Q ss_pred cEEEEcccCCCCCeeeEEEEec-CCC
Q psy534 105 TELRISNIRSQDIGDYTCLATH-VLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n-~~g 129 (145)
..|.|.+++.+|+|.|+|.|.+ ..+
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccCCe
Confidence 4799999999999999999984 555
No 235
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.76 E-value=1.9e-05 Score=46.39 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=23.6
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+.+|.|.+++.+|+|.|+|.|+|...
T Consensus 35 ~~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 35 GYSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred CCEEEECcCCHHHCEEEEEEEEcccc
Confidence 45899999999999999999999865
No 236
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.73 E-value=4.6e-05 Score=46.02 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.9
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.|.|..+
T Consensus 46 s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 46 STLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred EEEEECCCCcCCCEEEEEEEEECcc
Confidence 4799999999999999999999765
No 237
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.72 E-value=6.2e-05 Score=46.10 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=42.1
Q ss_pred hccceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 10 IFQMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 10 ~~~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+.++.+.|++.|. |. ..++|++++.............. ..+... -...|.|......|.+.|.|++.+.
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~-~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~ 84 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVP-NSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHE 84 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceecccccc-CCCCCEEEEEEEEECHHHhCCCCCEEEEEEeC
Confidence 57899999999987 64 57999998754222111011111 110000 1334556655566999999999764
No 238
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.71 E-value=0.00015 Score=42.95 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.5
Q ss_pred CcEEEEcccCC----CCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRS----QDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~----~d~G~Y~C~a~n~~g 129 (145)
+++|.|..+.. .|+|.|+|.|.|.+|
T Consensus 38 ~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05874 38 TGTLVINIMNGEKAEAYEGVYQCTARNERG 67 (77)
T ss_pred CceEEEeccccCCCCCCCEEEEEEEEcCCC
Confidence 34888887764 378999999999999
No 239
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.67 E-value=0.00011 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.9
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|.+++.+|+|.|+|.|.+..+
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 52 GLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred CEEEccCCHHHCEEEEEEEecCcc
Confidence 699999999999999999998754
No 240
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.67 E-value=7.7e-05 Score=45.48 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=22.0
Q ss_pred cEEEEcccCCCCCeeeEEEEecCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
..|.|.+++.+|+|.|+|.|.+..
T Consensus 48 ~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 48 DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcEEEeCCCHHHCEEEEEEEEecc
Confidence 379999999999999999999874
No 241
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.66 E-value=0.00019 Score=46.07 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=25.0
Q ss_pred ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534 42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 42 ~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
+.+|+....+ .......|.|.+++.+|+|.|+|.+.
T Consensus 61 ~~~rf~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~ 96 (117)
T cd04981 61 VKGRFTITRD-TSKSTVYLQLNSLTPEDTAVYYCARG 96 (117)
T ss_pred cCCcEEEEEE-ccCCEEEEEECCCCHHHCEEEEEEEE
Confidence 4456654211 11224579999999999999999875
No 242
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.65 E-value=0.00017 Score=45.58 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.7
Q ss_pred cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 102 NDGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.++ +|.|.+++.+|+|.|+|.+.+...
T Consensus 68 ~ng-SL~I~~v~~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 68 PNG-SLLIQNVTQKDTGFYTLQTITTNF 94 (105)
T ss_pred CCC-cEEEecCCcccCEEEEEEEEeCCc
Confidence 344 999999999999999999998763
No 243
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.65 E-value=0.00019 Score=43.96 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=16.6
Q ss_pred cCCCCCeeeEEEEecCCC
Q psy534 112 IRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 112 v~~~d~G~Y~C~a~n~~g 129 (145)
++.+|+|.|+|.|+|.+|
T Consensus 71 ~~~~D~G~Y~C~a~N~~G 88 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLG 88 (100)
T ss_pred CCcCcCEEEEEEEEcccc
Confidence 368999999999999999
No 244
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.64 E-value=9.4e-05 Score=43.80 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.8
Q ss_pred cEEEEcccCC----CCCeeeEEEEecCCC
Q psy534 105 TELRISNIRS----QDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~----~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++. +|+|.|+|.|.|.+|
T Consensus 39 g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05733 39 GTLVIDNMNGGRAEDYEGEYQCYASNELG 67 (77)
T ss_pred CEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence 4888988754 789999999999999
No 245
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.62 E-value=0.00017 Score=44.74 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.9
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|.++..+|+|.|+|+|.+..|
T Consensus 54 ~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 54 STYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred CCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 34799999999999999999999986
No 246
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.58 E-value=0.0003 Score=43.37 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=43.5
Q ss_pred HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+...+.++.+.|+... +.-.+.|||++... ...+..... .......+.|.+++.+|+|.|+|....
T Consensus 11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~-~~~~~~~~~-----~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSK-PVLHLYEKH-----HGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred ccCCCCeEEEEEecCC-CCCEEEEEECCCCC-Cceeccccc-----CCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 4557788999997764 34578999987531 111100000 012266789999999999999999753
No 247
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.57 E-value=0.00016 Score=44.84 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.6
Q ss_pred cEEEEcccCCCCCeeeEEEEecCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
..|.|.+++.+|+|.|+|.+....
T Consensus 62 ~~L~I~nV~~~D~G~YtC~~~t~~ 85 (95)
T cd05882 62 LIISISNVQLSDEGEYTCSIFTMP 85 (95)
T ss_pred EEEEECCCCcccCEEEEEEEEeec
Confidence 489999999999999999998743
No 248
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.55 E-value=0.00042 Score=41.73 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=39.5
Q ss_pred eeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534 14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN 81 (145)
Q Consensus 14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 81 (145)
+.+.|++.| .|.+.|.||+++...... ... ... .........+|.|..-...|...|.|++.+..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~-~~~-~~~-~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGK-STV-EET-WSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCc-ccc-eec-cCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 457899985 699999999998542211 000 000 00001125667786666666779999998654
No 249
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.49 E-value=0.00029 Score=42.80 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=23.0
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+|.|.+++.+|+|.|+|.+....|
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~ 81 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNG 81 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCC
Confidence 5899999999999999999998765
No 250
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.48 E-value=0.00019 Score=44.77 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.2
Q ss_pred CcEEEEcccCCCCCeeeEEEEec-CCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATH-VLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g 129 (145)
+.+|.|.+++.+|+|.|.|.+.+ +.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g 88 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTG 88 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCC
Confidence 34899999999999999999999 555
No 251
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.47 E-value=0.00032 Score=41.67 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=22.8
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|.+++.+|+|.|+|.|.|..|
T Consensus 52 ~l~i~~~~~~d~g~Y~C~~~n~~g 75 (85)
T cd05729 52 TLILESVVPSDSGKYTCIVENKYG 75 (85)
T ss_pred EEEEeECCcccCEEEEEEEEECCc
Confidence 689999999999999999999998
No 252
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.45 E-value=0.00023 Score=44.10 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=22.2
Q ss_pred EEEEcccCCCC-CeeeEEEEecCCC
Q psy534 106 ELRISNIRSQD-IGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d-~G~Y~C~a~n~~g 129 (145)
.|.|.++..+| .|.|+|.|.|..|
T Consensus 65 ~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 65 TLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred EEEECCccccccceeEEEEEEcCCC
Confidence 79999999855 8999999999999
No 253
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.45 E-value=0.00023 Score=44.13 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.9
Q ss_pred cEEEEcccCCCCCe-eeEEEEecCCC
Q psy534 105 TELRISNIRSQDIG-DYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G-~Y~C~a~n~~g 129 (145)
+.|.|.+++.+|+| .|.|.|+|...
T Consensus 58 GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 58 GNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceEEEEEEehhhCCCCeEEEEEcccc
Confidence 49999999999999 79999999864
No 254
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.43 E-value=0.00051 Score=42.80 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=39.0
Q ss_pred ccCCCCCEEEEEEEEEecCCC--------CCCCCC--cEEEEEEe-EEecCCcEEEEcccCCCC-CeeeEEEEecCCC
Q psy534 64 KIRESDQGWYECKVVFLNRSP--------NSHKNG--TWFHLDVH-GVFNDGTELRISNIRSQD-IGDYTCLATHVLY 129 (145)
Q Consensus 64 ~v~~~D~G~Y~C~~~~~~~~~--------~~~~~g--~~~~l~c~-~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~~g 129 (145)
.+.+.|.+.-.|.+...-.+. .....+ ..+.+.-. ......+.|.|.++.++| .|.|.|.|.|.+|
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G 89 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG 89 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence 456889999999983211000 011111 12222211 011123479999998877 7999999999999
No 255
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.41 E-value=8.9e-05 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.8
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.+.|..+
T Consensus 65 ~~L~I~~l~~sDsgtY~C~v~~~~~ 89 (94)
T cd07690 65 FPLIIKNLKIEDSDTYICEVEDKKE 89 (94)
T ss_pred EEEEECCCCHHHCEEEEEEECCccc
Confidence 3699999999999999999999865
No 256
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.40 E-value=0.00021 Score=44.54 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.7
Q ss_pred CcEEEEcccCCCCCeeeEEEEec-CCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATH-VLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g 129 (145)
+.+|.|.+++.+|+|.|+|.+.+ +.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g 89 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAG 89 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCC
Confidence 34899999999999999999987 445
No 257
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.40 E-value=0.00065 Score=42.50 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=47.0
Q ss_pred HHhhhccceeeEEeecCCCccE-EEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 6 AVKSIFQMLSVGDFADDEDIPV-YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 6 ~~~~~~~~~~~~~w~~g~p~p~-~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.....+-.+.+.+-....|.|. +.|.+.+....+ ............-....+.|.+.+++.+|+|.|+|.+.+.
T Consensus 13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~-~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~ 87 (101)
T cd05860 13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTN-TSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNS 87 (101)
T ss_pred EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCc-cccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECC
Confidence 3445566667777777899997 999887643211 1111111110000113588999999999999999999754
No 258
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.40 E-value=0.00019 Score=44.53 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=22.8
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+|.|.+++.+|+|.|+|.+.+..+
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~ 89 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGF 89 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCc
Confidence 4799999999999999999998765
No 259
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.40 E-value=0.00093 Score=40.03 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=36.5
Q ss_pred eeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEEec
Q psy534 14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVFLN 81 (145)
Q Consensus 14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~ 81 (145)
+.+.|++.| .|.+.+.||+++....... ......+.... -...|.+......|.+.|.|++.+..
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~ 68 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK---LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPA 68 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce---eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChh
Confidence 467899984 5999999999975422111 11111110000 02334554444555679999998654
No 260
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.39 E-value=0.00021 Score=44.86 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.6
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..+|.|.+++.+|+|.|.|.+.+..+
T Consensus 67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~ 92 (106)
T cd05714 67 DASLVITDLRLEDSGRYRCEVIDGIE 92 (106)
T ss_pred cceEEECCCCHHHCEEEEEEEEcCCC
Confidence 35899999999999999999999866
No 261
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.37 E-value=0.00028 Score=41.84 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.3
Q ss_pred CcEEEEcccC----CCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIR----SQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~----~~d~G~Y~C~a~n~~g 129 (145)
+.+|.|..+. .+|+|.|+|.|+|.+|
T Consensus 38 ~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05875 38 SGTLVIDFSGGGRPEDYEGEYQCFARNNLG 67 (77)
T ss_pred CceEEEeccCCCCCCCCCEEEEEEEEeccc
Confidence 3489998764 2469999999999999
No 262
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.35 E-value=0.00036 Score=42.68 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEcccCCCCCeeeEEEEecC
Q psy534 106 ELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
.+.|.+++.+|+|.|+|...+.
T Consensus 54 ~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 54 KFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEccCCChhHCEEEEEEEECC
Confidence 5899999999999999999986
No 263
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.32 E-value=0.00026 Score=44.40 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=23.7
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..+|.|.+++.+|+|.|.|.+.++.+
T Consensus 67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~ 92 (106)
T cd05877 67 DASLVITDLRLEDYGRYRCEVIDGLE 92 (106)
T ss_pred cEEEEEccCChHHCEEEEEEEEeccc
Confidence 34799999999999999999999887
No 264
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.31 E-value=0.00057 Score=41.00 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=20.7
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+..|.|..+ .|+|.|.|.|+|.+|
T Consensus 48 ~s~L~i~~~--~d~g~Y~C~A~N~~G 71 (81)
T cd05749 48 PSVLNVPGL--NETSKFSCEAHNAKG 71 (81)
T ss_pred CCEEEEccc--cCCeEEEEEEEeccC
Confidence 457899887 478999999999999
No 265
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.29 E-value=0.002 Score=38.85 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=37.9
Q ss_pred eeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCC-CCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534 14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESDQGWYECKVVFLN 81 (145)
Q Consensus 14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 81 (145)
+.++|++.| .|...++|+|++....+... .......+.. ..-.+|.|..-...|...|.|++.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~--~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKY--LKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCcee--eEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 568999995 68889999999864222111 0111011000 013445555444566779999997653
No 266
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.22 E-value=0.00079 Score=39.29 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+.+.+++.+|+|.|+|.|.+..+
T Consensus 46 ~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 46 GLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp EEEESSEEGGGTEEEEEEEEETTE
T ss_pred eeeeeeeccccCEEEEEEEEeCCC
Confidence 377889999999999999999765
No 267
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.17 E-value=0.00064 Score=43.41 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=24.1
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
...+|.|.+++.+|+|.|+|.+.+++.
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~ 98 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIE 98 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCC
Confidence 345899999999999999999998876
No 268
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.14 E-value=0.00046 Score=42.64 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.1
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+|.|.+++.+|+|.|+|.+.+..+
T Consensus 62 ~sL~I~~v~~~DsG~Y~C~~~t~~~ 86 (95)
T cd07701 62 LSISISDVSLSDEGQYTCSLFTMPV 86 (95)
T ss_pred EEEEECcCCcccCEEEEEEeEeecC
Confidence 4799999999999999999998543
No 269
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.10 E-value=0.00037 Score=40.08 Aligned_cols=23 Identities=43% Similarity=0.821 Sum_probs=20.9
Q ss_pred CcEEEEcccCCCCCeeeEEEEec
Q psy534 104 GTELRISNIRSQDIGDYTCLATH 126 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n 126 (145)
...|.|.++..+|.|.|+|.|+|
T Consensus 53 ~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 53 NSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEccCCHHhCcEEEEEEEC
Confidence 34899999999999999999987
No 270
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.10 E-value=0.0012 Score=40.82 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.2
Q ss_pred CcEEEEcccCCCCCeeeEEEEecC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
..+|.|.+++.+|+|.|.|.....
T Consensus 60 ~~sL~I~nv~~~D~G~Y~C~~~~~ 83 (97)
T cd05846 60 STSITIWNVTLEDEGCYKCIFNTF 83 (97)
T ss_pred ccEEEEeCCceeeeEEEEEEEEeC
Confidence 458999999999999999998754
No 271
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.09 E-value=0.003 Score=37.09 Aligned_cols=67 Identities=7% Similarity=0.033 Sum_probs=38.0
Q ss_pred ceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534 13 MLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 13 ~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
++.+.|.+.|. |. ..+.|+|++... ......-..+...+.... -..|.|......+...|.|++.+.
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~-~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEV-TSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEEC-CCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 46789999975 65 579999987532 222211111111111111 344555554556778999999754
No 272
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.08 E-value=0.00063 Score=41.76 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.2
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.+.+...
T Consensus 62 ~~L~I~~v~~~DsG~Y~C~~~~~~~ 86 (95)
T cd05717 62 LSISISNVSLSDEGRYTCSLYTMPV 86 (95)
T ss_pred eEEEEccCCcccCEEEEEEEecCCC
Confidence 4799999999999999999998654
No 273
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.07 E-value=0.0041 Score=37.38 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=37.9
Q ss_pred eeeEEeecC-CCccEEEEecCCCCcccccccceEEEecC-CC-CC-CeeeEEEcccCCCCCEEEEEEEEEec
Q psy534 14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDK-ES-PF-GMASLNLTKIRESDQGWYECKVVFLN 81 (145)
Q Consensus 14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~-~~-~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~ 81 (145)
..+.|.+.| .|.+.++|++++... ..... ....+ +. .. -...|.|......|...|.|++.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l-~~~~~---~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQEL-EGAPT---SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEEC-CCcce---eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 357899985 598999999998542 21111 11111 00 00 02445555555667789999998643
No 274
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.03 E-value=0.00068 Score=43.55 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.3
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+.+|.|.+++.+|.|.|+|.+.|+-+
T Consensus 79 daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 79 DGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred eeEEEEccCCcccCEEEEEEEEcCCC
Confidence 34899999999999999999999865
No 275
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.01 E-value=0.002 Score=40.46 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=40.9
Q ss_pred hccceeeEEeec---CCCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 10 IFQMLSVGDFAD---DEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 10 ~~~~~~~~~w~~---g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+-+-+.-+.|.. ..+.. +++|..+........+..|+.+. .++.+|.|..++++|+|.|.-++.+
T Consensus 23 ~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~-----~enlaLlIkaAq~qDSG~Y~LEvT~ 92 (108)
T PF11465_consen 23 IQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFT-----SENLALLIKAAQPQDSGLYCLEVTN 92 (108)
T ss_dssp ---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEE-----TTTTEEEESS-SGGG-EEEEEEEEE
T ss_pred ccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeee-----ccCceEEEeecCcccCceEEEEEEc
Confidence 334455678876 44444 35564443222223367888875 4599999999999999999999874
No 276
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.00 E-value=0.00093 Score=41.05 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.3
Q ss_pred CcEEEEcccCCCCCeeeEEEEec-CCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATH-VLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g 129 (145)
..+|.|.+++.+|+|.|.|.+.. +.|
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g 87 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQG 87 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCC
Confidence 34899999999999999999875 455
No 277
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.96 E-value=0.0011 Score=42.05 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.3
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+|.|.+++.+|+|.|.|.+.....
T Consensus 72 asL~I~~l~~sD~G~Y~C~v~~~~~ 96 (110)
T cd05878 72 ASLEISRLRSSDSGVYRCEVMHGIE 96 (110)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCC
Confidence 4799999999999999999988654
No 278
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=96.90 E-value=0.0016 Score=41.94 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.7
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+.+|.|.+++.+|+|.|.|.+.++..
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~ 103 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIE 103 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCc
Confidence 35899999999999999999998876
No 279
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.89 E-value=0.00094 Score=42.72 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.9
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..+|.|.+++.+|+|.|+|.+.|.-.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 34799999999999999999998654
No 280
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=96.86 E-value=0.0011 Score=42.26 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.1
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..+|.|.+++.+|+|.|.|.+..+..
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~ 96 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGIN 96 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCc
Confidence 34899999999999999999998764
No 281
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=96.85 E-value=0.0012 Score=40.82 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=23.1
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+|.|.+++.+|+|.|.|.+.+..|
T Consensus 61 ~sL~I~~~~~~DsG~Y~c~v~~~~~ 85 (97)
T cd05775 61 YSLQISNLKMEDAGSYRAEINTKNG 85 (97)
T ss_pred eeEEECCCchHHCEEEEEEEEcCCC
Confidence 4899999999999999999998876
No 282
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.81 E-value=0.0087 Score=38.28 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=28.6
Q ss_pred ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534 42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN 81 (145)
Q Consensus 42 ~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 81 (145)
.++|+.. ..+......+|.|.+++.+|++.|.|......
T Consensus 59 ~~~r~tc-s~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e~my 97 (115)
T cd05721 59 SLDGFNC-DGTLGNEQVNFTLQNLRANQTDIYFCKIELMY 97 (115)
T ss_pred cCCCeEE-eEeCCCCEEEEEEcCCCHHHCeEEEEEeeecc
Confidence 4566643 22344557889999999999999999875443
No 283
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=96.76 E-value=0.0015 Score=41.64 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.3
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.+|.|.+++.+|+|.|.|.+.|.-.
T Consensus 80 ~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 80 ASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eEEEEeeCCcccCEEEEEEEEeCCC
Confidence 4799999999999999999998643
No 284
>KOG3515|consensus
Probab=96.72 E-value=0.0061 Score=50.35 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=74.4
Q ss_pred hhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534 9 SIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----- 82 (145)
Q Consensus 9 ~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----- 82 (145)
..+..|.+-|.+++ .|.+.+.||+.+.... +|-.. ..+..|...++.+..-+.|.|++.+...
T Consensus 20 ~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~ 88 (741)
T KOG3515|consen 20 RLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-----GRYAT------IADPTLVTTGDVRDTVAELNCRAFNSVGMPSRC 88 (741)
T ss_pred ccCCcceeeeecCCCCCCcceEEEecCcccc-----ccccc------ccCCceeeecchhhhhhhhhhhhcccccCceec
Confidence 45778899999995 4677899999875421 33322 2377788888888889999999965421
Q ss_pred --------CC--------CCCCCCcEEEEEEe------------------------------------EEecCCcEEEEc
Q psy534 83 --------SP--------NSHKNGTWFHLDVH------------------------------------GVFNDGTELRIS 110 (145)
Q Consensus 83 --------~~--------~~~~~g~~~~l~c~------------------------------------~~~~~~~~L~i~ 110 (145)
++ .....+..+.+.|. +.......+.+.
T Consensus 89 ~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~ 168 (741)
T KOG3515|consen 89 PMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQT 168 (741)
T ss_pred ceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeE
Confidence 00 01233667777774 000223457788
Q ss_pred ccCCCCCeeeEEEEecCC
Q psy534 111 NIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 111 ~v~~~d~G~Y~C~a~n~~ 128 (145)
..+.++.|.|+|.|.|..
T Consensus 169 v~Rka~~g~~tC~A~nr~ 186 (741)
T KOG3515|consen 169 VSRKADNGNYTCPANNRN 186 (741)
T ss_pred EEEecCCceeEccccccc
Confidence 888999999999999963
No 285
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=96.69 E-value=0.0021 Score=39.91 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.3
Q ss_pred CcEEEEcccCCCCCeeeEEEEec-CCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATH-VLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g 129 (145)
+.+|.|.+++.+|+|.|+|.+.+ +.|
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G 85 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLG 85 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCC
Confidence 45999999999999999999755 456
No 286
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.65 E-value=0.0023 Score=39.69 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.4
Q ss_pred CcEEEEcccCCCCCeeeEEEEecC-CC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHV-LY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~-~g 129 (145)
+.+|.|.+|+.+|+|.|+|.+... .|
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g 85 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQG 85 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCC
Confidence 348999999999999999998764 55
No 287
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=96.61 E-value=0.0025 Score=40.03 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=24.6
Q ss_pred cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 102 NDGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..+..|.|.++..+|+|.|+|++.|.-.
T Consensus 67 ~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~ 94 (104)
T cd05896 67 KEEDSIWFRPAELQDSGLYTCVLRNSTY 94 (104)
T ss_pred EeCCEEEEEeCChhhCeEEEEEECCCCc
Confidence 3455899999999999999999999865
No 288
>smart00409 IG Immunoglobulin.
Probab=96.61 E-value=0.0035 Score=36.36 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=23.0
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.+.+..+
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00409 51 STLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEcCCC
Confidence 4799999999999999999998876
No 289
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.61 E-value=0.0035 Score=36.36 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=23.0
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|.+++.+|+|.|+|.+.+..+
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00410 51 STLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEcCCC
Confidence 4799999999999999999998876
No 290
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.60 E-value=0.0015 Score=40.55 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.0
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..+|.|.+++.+|+|.|.|.+.+..+
T Consensus 66 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 66 SFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEEEECCCCHHHCEEEEEEEecCCC
Confidence 34799999999999999999998765
No 291
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.53 E-value=0.005 Score=38.48 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.5
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
...|.|.+++.+|+|.|.|.+.+..+
T Consensus 69 ~~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 69 SSSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred EEEEEECCCCHHHCEEEEEEEecCCC
Confidence 34799999999999999999997643
No 292
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.51 E-value=0.016 Score=36.26 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=41.1
Q ss_pred hhccceeeEEeec-CCCccE--EEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEEec
Q psy534 9 SIFQMLSVGDFAD-DEDIPV--YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVFLN 81 (145)
Q Consensus 9 ~~~~~~~~~~w~~-g~p~p~--~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~ 81 (145)
..+..+.+.|.+. +.|.+. +.||+++.......+.+ ..........+|.+. +.++|-| .|.|+|.+..
T Consensus 14 ~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~----~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l 85 (100)
T cd05755 14 PVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD----NTKSPVNAPATITIT-VDREDHGANFSCETELDL 85 (100)
T ss_pred cCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc----ccCCCceeEEEEEEe-cchhhCCcEEEEEEEecc
Confidence 4567889999998 468776 69999985432211111 000011224556665 4455555 9999997543
No 293
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.50 E-value=0.014 Score=35.93 Aligned_cols=67 Identities=10% Similarity=0.015 Sum_probs=38.6
Q ss_pred hhhccceeeEEeecCC-Ccc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEc---ccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDE-DIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLT---KIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~-p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~---~v~~~D~G~Y~C~~~~~ 80 (145)
..++.+..++|.+.|. |.. .++|++++........... ... .++++..+. .+..++...|.|++.+.
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~--~~~----~~dgTy~~~s~L~~~~~~~~~ysC~V~H~ 82 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTE--LIP----NGDWTYQILVMLETTPSRGDTYTCVVEHS 82 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecc--eEE----CCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence 3456788999999984 655 7899999854222101111 111 223332221 33455677999999764
No 294
>PHA02633 hypothetical protein; Provisional
Probab=96.50 E-value=0.0053 Score=34.71 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=27.8
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEeCe
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY-----PDLLVVLGS 138 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~ 138 (145)
++..|-|-+...+|+|.|.|...|.-- .++.|..+.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 455789999999999999999998743 555555544
No 295
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.45 E-value=0.012 Score=36.23 Aligned_cols=65 Identities=6% Similarity=-0.154 Sum_probs=39.9
Q ss_pred hhccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEc---ccCCCCCEEEEEEEEEe
Q psy534 9 SIFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLT---KIRESDQGWYECKVVFL 80 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~---~v~~~D~G~Y~C~~~~~ 80 (145)
+.+.+..++|.+.|- | ...+.|.+++.... +..... .+. .++++.++. .+..++...|.|++.+.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~--~~~~~~-~~p----~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP--KVEQSD-LSF----SKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC--CcEECc-EEE----CCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 445566899999984 5 44689999985422 221111 111 234454442 34677888999999763
No 296
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.44 E-value=0.029 Score=36.81 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=38.3
Q ss_pred hccceeeEEeecCC-Cc-cEEEEecCCCCccc-----cccc-ceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534 10 IFQMLSVGDFADDE-DI-PVYIWYDSYPTHEA-----EEYK-GRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 10 ~~~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~-----~~~~-~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.+..+.+.|.+.|. |. +.+.|++++..... .... ..... ..+.... ...|.|..-...+.+.|.|++.+.
T Consensus 52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~-~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQ-HQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEe-CCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 35667899999985 65 48999998742111 0100 00110 1111111 345566544445567999999754
No 297
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.36 E-value=0.016 Score=35.86 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=36.7
Q ss_pred ceeeEEeec-CCCccEEEEecCCCCcc----cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 13 MLSVGDFAD-DEDIPVYIWYDSYPTHE----AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 13 ~~~~~~w~~-g~p~p~~~w~k~~~~~~----~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
-....|++. |.|.+.|+|+++..... .....+++.. ...|.+..-...|...|.|++.+.
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv--------~S~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTV--------TSEYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEE--------EEEEEEecCHHHCCCEEEEEEeCc
Confidence 345678887 78999999998832100 0111122222 445666655566666899999854
No 298
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.36 E-value=0.004 Score=38.55 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.7
Q ss_pred EEEEcccCCCCCeeeEEEEecCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
+|.|.+++.+|+|.|+|.+....
T Consensus 63 tL~I~~vq~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 63 RVSLSNVSLSDEGRYFCQLYTDP 85 (95)
T ss_pred EEEECcCCcccCEEEEEEEEccc
Confidence 69999999999999999998654
No 299
>PHA02633 hypothetical protein; Provisional
Probab=96.36 E-value=0.0037 Score=35.32 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.3
Q ss_pred CeeeEEEcccCCCCCEEEEEEEEE
Q psy534 56 GMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 56 ~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
....|.|.++..+|+|.|.|.+.+
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn 39 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKN 39 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcC
Confidence 367799999999999999999963
No 300
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=96.32 E-value=0.012 Score=35.63 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|..++.+|+|.|.|.+. +.|
T Consensus 48 GLlI~~~~~~dsG~Y~C~s~-E~g 70 (85)
T cd05872 48 GLLILVTSPEHSGTYRCYSE-EEG 70 (85)
T ss_pred CCEEEECCHhhCEEEEEEEe-cCC
Confidence 47899999999999999987 556
No 301
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.32 E-value=0.012 Score=36.00 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=37.4
Q ss_pred ccceeeEEeecCC-Ccc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEE---EcccCCCCCEEEEEEEEEe
Q psy534 11 FQMLSVGDFADDE-DIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLN---LTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 11 ~~~~~~~~w~~g~-p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~---I~~v~~~D~G~Y~C~~~~~ 80 (145)
...+.++|.+.|. |.. .+.|++++.............. .++++.. ...+..+|.+.|.|++.+.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~------~~d~ty~~~s~l~v~~~~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILP------NGDGTYQLWVTLEVPPEDKARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEE------CCCCeEEEEEEEEECCCCCCEEEEEEEeC
Confidence 4567999999985 654 7899999742111111112211 1222222 2244556889999999764
No 302
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.22 E-value=0.024 Score=34.46 Aligned_cols=25 Identities=20% Similarity=0.516 Sum_probs=21.7
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
.+.+|.+.++...|+|.++|.+...
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEEC
Confidence 4568999999999999999999654
No 303
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.20 E-value=0.031 Score=34.00 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=39.4
Q ss_pred ccceeeEEeecCC--CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534 11 FQMLSVGDFADDE--DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 11 ~~~~~~~~w~~g~--p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
+..+.+.|-.... |.+.+.|+.-+.... .. ...+..+|.+..+...|+|.+.|.+.
T Consensus 14 G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~--------~~----~~~~~ktL~~~qv~~qdSG~WtC~V~ 71 (88)
T cd07694 14 GTNLTLTLHGSSNSLPAFKVEWRGPGNKSK--------QI----LNQDKKTLNLVQLGPNDSGTWDCIVS 71 (88)
T ss_pred CCcEEEEEecCCCCCCCccEEEeCCCCccc--------ee----ccCCccEEEeceeCcccCCEEEEEEE
Confidence 4566777877643 455899976654311 11 11358889999999999999999996
No 304
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.20 E-value=0.0073 Score=38.02 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.1
Q ss_pred CcEEEEcccCCCCCeeeEEEEecCC
Q psy534 104 GTELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
...|.|.+++.+|+|.|+|.+.+..
T Consensus 71 ~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 71 RSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred ccEEEECCCChhhCEEEEEEeeCCC
Confidence 3479999999999999999998764
No 305
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.20 E-value=0.0082 Score=38.47 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=25.1
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCCCcEEEEeC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLYPDLLVVLG 137 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~v~~~ 137 (145)
.+|.|.+++.+|+|.|.|.+...-+..+....|
T Consensus 80 ~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~f~~g 112 (119)
T cd05712 80 CSLLISDAQPEDSGKYFFRVELGDSNKYNFLKN 112 (119)
T ss_pred EEEEEccCChhhCeEEEEEEEcCCccEEEecCC
Confidence 479999999999999999987654444444433
No 306
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.20 E-value=0.02 Score=35.31 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=36.8
Q ss_pred hhccceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEc---ccCCCCCEEEEEEEEEe
Q psy534 9 SIFQMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLT---KIRESDQGWYECKVVFL 80 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~---~v~~~D~G~Y~C~~~~~ 80 (145)
+...+..++|++.|- |. ..+.|.+++...........+ .. .++++.++. .+..++...|.|++.+.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~--~~----~~Dgty~~~s~L~v~~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRY--YP----RQDLSFQKFSYLNFTPEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeee--Ee----CCCCcEEEEEEEEEECCCCCeEEEEEEeC
Confidence 344557899999984 54 568999988542211111111 11 223332221 33455677999999753
No 307
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=96.05 E-value=0.0046 Score=38.42 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.3
Q ss_pred cEEEEcccCCCCCeeeEEEEecC
Q psy534 105 TELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
.+|.|.+++.+|+|.|.|.+...
T Consensus 79 ~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 79 FSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp EEEEESSESGGGEEEEEEEEEES
T ss_pred EEEEECCCCcCcCEEEEEEEEEC
Confidence 47999999999999999999876
No 308
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.03 E-value=0.023 Score=35.32 Aligned_cols=66 Identities=11% Similarity=0.014 Sum_probs=41.8
Q ss_pred Hhhhccceee-EEeec-CCCccEEEEecCCCCcc----cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 7 VKSIFQMLSV-GDFAD-DEDIPVYIWYDSYPTHE----AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 7 ~~~~~~~~~~-~~w~~-g~p~p~~~w~k~~~~~~----~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+.+.++.+ .|++. |.|++.|.|+.+..-.. .....+.+.. ...+.+..-+..|.-.+.|++.+.
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV--------~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV--------TSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE--------EEEEEEEeCHHHCCcEEEEEEeCc
Confidence 3455666677 89887 88999999998732111 1111223332 455666666666777999999754
No 309
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=95.91 E-value=0.012 Score=36.88 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=23.2
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.|..++.+|+|.|+|.|+|+..
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCC
Confidence 3799999999999999999999976
No 310
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.90 E-value=0.013 Score=42.56 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=36.6
Q ss_pred CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 23 EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 23 ~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
-..|.+.|...++..+.. .+++.+ -..++|.+.+.+.+++|.|+|.....
T Consensus 10 ~iDP~y~W~GP~g~~l~g--n~~~nI------T~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSG--NSYVNI------TETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred cCCCceEEECCCCcccCC--CCeEEE------ccCceEEeeccccccCCceEEEEEEE
Confidence 357899998776543332 235555 23788999999999999999998543
No 311
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.88 E-value=0.039 Score=34.06 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=35.8
Q ss_pred cceeeEEeec-CCCccEEEEecCCCCccc----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFAD-DEDIPVYIWYDSYPTHEA----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~-g~p~p~~~w~k~~~~~~~----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.-....|.+. |.|.+.|+|+++...... ....+.+.. ...|.+..-...|.-.|.|++.+.
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv--------~S~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTV--------TSEYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEE--------EEEEEEecCHHHCCCEEEEEEeCc
Confidence 3445668886 889999999997211000 001111211 345666555555666899999754
No 312
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.83 E-value=0.0084 Score=36.91 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred cEEEEcccCCCCCeeeEEEEecC
Q psy534 105 TELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 63 ~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 63 ASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred EEEEECCCChhhCEEEEEEEccC
Confidence 46999999999999999998754
No 313
>smart00406 IGv Immunoglobulin V-Type.
Probab=95.79 E-value=0.0043 Score=36.26 Aligned_cols=20 Identities=45% Similarity=0.820 Sum_probs=17.9
Q ss_pred cEEEEcccCCCCCeeeEEEE
Q psy534 105 TELRISNIRSQDIGDYTCLA 124 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a 124 (145)
.+|.|.+++.+|+|.|.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEcCCCHHHCEEEEEcC
Confidence 47999999999999999963
No 314
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.73 E-value=0.0066 Score=37.96 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.4
Q ss_pred cEEEEcccCCCCCeeeEEEEecC
Q psy534 105 TELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 71 ~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 71 FTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred EEEEECCCChHHCEEEEEEEeCC
Confidence 36999999999999999998764
No 315
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.65 E-value=0.026 Score=34.64 Aligned_cols=20 Identities=15% Similarity=0.567 Sum_probs=17.8
Q ss_pred EEEEcccCCCCCeeeEEEEe
Q psy534 106 ELRISNIRSQDIGDYTCLAT 125 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~ 125 (145)
.+.|..++.+|+|.|.|...
T Consensus 56 ~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 56 SFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEecCCCcccCEEEEEEEE
Confidence 46899999999999999964
No 316
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=95.60 E-value=0.0071 Score=37.17 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.3
Q ss_pred cEEEEcccCCCCCeeeEEEEecCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
..|.|.+++.+|+|.|.|.+....
T Consensus 64 ~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 64 FTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEEEEcCCCHHHCEEEEEEcccCC
Confidence 379999999999999999988754
No 317
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=95.40 E-value=0.015 Score=34.75 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=22.0
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+|.+......|.+.|+|+|.|+++
T Consensus 44 ~L~~~~~~~Ddg~~~~C~A~n~a~ 67 (80)
T cd05885 44 TIRFPVDRKDDGAILSCEASHPAL 67 (80)
T ss_pred EEEEEeeeccCCcEEEEEEEChhh
Confidence 689988889999999999999987
No 318
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=95.38 E-value=0.077 Score=31.81 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=38.2
Q ss_pred ccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 11 FQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 11 ~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+..+.+.|-+. |.|.|.++|+.++....... ........+... -...|.+..-...+...+.|++.+.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~ 83 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN--TTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHP 83 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE--EEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEET
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeee--eeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECC
Confidence 45778889766 78999999999986431111 111111111111 1345666544455667889999764
No 319
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.22 E-value=0.014 Score=36.97 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.5
Q ss_pred cEEEEcccCCCCCeeeEEEEecC
Q psy534 105 TELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
..|+|.+++.+|+|.|.|.+...
T Consensus 77 ~~L~I~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 77 STLTIQNLEKEDSATYYCAYWES 99 (116)
T ss_pred EEEEEEECCHHHCEEEEEEEecC
Confidence 47999999999999999998753
No 320
>PHA03376 BARF1; Provisional
Probab=95.12 E-value=0.03 Score=38.99 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=22.2
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
-+|.|.+++.+|.|.|+|..+-...
T Consensus 87 vsLvI~~l~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 87 FFLVVTAANISHDGNYLCRMKLGET 111 (221)
T ss_pred EEEEEEeeeecCCceEEEEEEcCCC
Confidence 4789999999999999999998764
No 321
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.11 E-value=0.071 Score=33.13 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=36.8
Q ss_pred ccceeeEEeecC-CC-ccEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534 11 FQMLSVGDFADD-ED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 11 ~~~~~~~~w~~g-~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..++.++|++.| .| ...+.|++++.... .+..........+.... ...|.+..-.-.+...|.|++.+.
T Consensus 17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~-~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 17 SGKATLVCLINDFYPGFATVQWKVDGATVS-SGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCCcEEEEEEEeEECCCCEEEEEECCEECc-ccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 567899999997 45 55789999885421 11111011111111111 233334333333467999999764
No 322
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=94.91 E-value=0.016 Score=36.20 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred cEEEEcccCCCCCeeeEEEEec
Q psy534 105 TELRISNIRSQDIGDYTCLATH 126 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n 126 (145)
..|.|.+++.+|+|.|.|.+.+
T Consensus 69 ~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 69 FVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEEECCCCHHHCEEEEEEEcc
Confidence 3799999999999999998764
No 323
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.83 E-value=0.018 Score=36.57 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred cEEEEcccCCCCCeeeEEEEec
Q psy534 105 TELRISNIRSQDIGDYTCLATH 126 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n 126 (145)
.+|+|.+++.+|+|.|.|.+..
T Consensus 72 ~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 72 ISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred EEEEECCCCHHHCEEEEEEEEC
Confidence 4799999999999999999985
No 324
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.77 E-value=0.037 Score=30.13 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=21.4
Q ss_pred cEEEEcccCCCCCeeeEEEEecCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
..|.|.+++.+|.|.|.|.+.+..
T Consensus 43 ~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 43 STLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEECccCcccCcEEEEEEecCc
Confidence 378999999999999999998875
No 325
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=94.68 E-value=0.022 Score=35.74 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=19.1
Q ss_pred EEEEcccCCCCCeeeEEEEec
Q psy534 106 ELRISNIRSQDIGDYTCLATH 126 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n 126 (145)
.|+|.+++.+|+|.|.|...+
T Consensus 73 ~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 73 RLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred EEEECCCCHHHCEEEEEeEcC
Confidence 699999999999999999763
No 326
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=94.68 E-value=0.12 Score=31.74 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred cceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534 12 QMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 12 ~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.++.+.|.+.|- |. ..+.|++++............ ...++.... ...|.+..-.-.+...|.|++.+.
T Consensus 15 ~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~-~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 15 ETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAP-QKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCEEEEEEEEeEECCCCEEEEEECCEECcCceeeccc-EECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 457899999984 54 568999987542111111111 111111111 233434422223567999999753
No 327
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=94.14 E-value=0.34 Score=30.79 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=36.6
Q ss_pred hccceeeEEeecC-CCc-cEEEEecCCCCcccccccceEEEecCCC-CCC-eeeEEEcccCCCCCE-EEEEEEEEe
Q psy534 10 IFQMLSVGDFADD-EDI-PVYIWYDSYPTHEAEEYKGRISRVDKES-PFG-MASLNLTKIRESDQG-WYECKVVFL 80 (145)
Q Consensus 10 ~~~~~~~~~w~~g-~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~-~~~-~~sL~I~~v~~~D~G-~Y~C~~~~~ 80 (145)
.+.+..++|++.| .|. ..+.|++|+.... ... ... ....+. ... ...|.+. ....|.| .|.|++.+.
T Consensus 20 ~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~-~~~-~~~-~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 20 PGQSVNFTCSAHGFSPRDITVKWLKNGNELS-AEQ-PNI-TPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHR 91 (111)
T ss_pred CCCCEEEEEEEeeEeCCCCEEEEEECCEECc-ccc-cce-eeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeC
Confidence 4556789999997 464 6899999985422 111 111 111110 011 2334444 3455554 499999764
No 328
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=93.73 E-value=0.17 Score=30.04 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=38.2
Q ss_pred hhhccceeeEEeecCC-Ccc-EEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534 8 KSIFQMLSVGDFADDE-DIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 8 ~~~~~~~~~~~w~~g~-p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..+...+.+.|.+.|. |.. .+.|++++........... .....+.... ...|.+. ..+...|.|++.+.
T Consensus 5 ~~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~-~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 5 EELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTP-PPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHE 76 (83)
T ss_dssp HHSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEE-EEEETTSEEEEEEEEEEE---TTTTGGEEEEEEET
T ss_pred ccCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecc-cccccccceeeeEEEEec---CCCCCEEEEEEEEC
Confidence 4457888999999974 655 5899998753221111111 1111101111 3334444 55566899999764
No 329
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=93.72 E-value=0.13 Score=29.40 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=25.9
Q ss_pred CCcEEEEEEeE------Ee-------cCCcEEEEcccCCCCCeeeEEEEecC
Q psy534 89 NGTWFHLDVHG------VF-------NDGTELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 89 ~g~~~~l~c~~------~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
.|..|+|+|+. +. ..+..+.+.+-. ++.|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~~~i~W~~n~~~~~g~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGDDIKWKKNDQVSQGSDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCCCceEEeCCccCCCCCceEEeeccC-CCCceEEEEeCCC
Confidence 57889999971 11 122345556666 8899999999754
No 330
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=93.59 E-value=0.26 Score=30.50 Aligned_cols=26 Identities=4% Similarity=-0.101 Sum_probs=19.5
Q ss_pred ccceeeEEeecCC-C-ccEEEEecCCCC
Q psy534 11 FQMLSVGDFADDE-D-IPVYIWYDSYPT 36 (145)
Q Consensus 11 ~~~~~~~~w~~g~-p-~p~~~w~k~~~~ 36 (145)
..+..++|.+.|- | ...+.|.+++..
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~ 43 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSP 43 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEE
Confidence 3467999999984 5 445899999854
No 331
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=93.37 E-value=0.085 Score=31.16 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.4
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.+.....+|.|.|+|.|.|...
T Consensus 47 ~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 47 TLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred EEEEeCceecCCCEEEEEEcCccC
Confidence 577777777788999999999764
No 332
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=93.26 E-value=0.078 Score=36.78 Aligned_cols=24 Identities=29% Similarity=0.575 Sum_probs=20.6
Q ss_pred CCcEEEEcccCCCCCeeeEEEEec
Q psy534 103 DGTELRISNIRSQDIGDYTCLATH 126 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n 126 (145)
....|+|.+++++|+|.|+|...-
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~t 106 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNT 106 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEe
Confidence 345899999999999999998653
No 333
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=93.12 E-value=0.34 Score=27.74 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=27.9
Q ss_pred ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534 11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78 (145)
Q Consensus 11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 78 (145)
++-|.+.|-..... +.|++++.... . ....+.+.+-. +++|.|.|.+.
T Consensus 7 GTtVtlTCP~~~~~---i~W~~n~~~~~--g--------------~~~~~~~~~~~-e~~G~Y~C~~~ 54 (65)
T cd07692 7 GTTVTVTCPLSGDD---IKWKKNDQVSQ--G--------------SDEKYLSLNHF-SSSGYYHCTAD 54 (65)
T ss_pred ccEEEEECCCCCCC---ceEEeCCccCC--C--------------CCceEEeeccC-CCCceEEEEeC
Confidence 45566667544222 88999974311 1 02223333444 89999999874
No 334
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.08 E-value=0.49 Score=29.50 Aligned_cols=27 Identities=4% Similarity=0.046 Sum_probs=20.7
Q ss_pred hccceeeEEeecCC-Ccc-EEEEecCCCC
Q psy534 10 IFQMLSVGDFADDE-DIP-VYIWYDSYPT 36 (145)
Q Consensus 10 ~~~~~~~~~w~~g~-p~p-~~~w~k~~~~ 36 (145)
.+..+.++|++.|. |.. .+.|++++..
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~ 43 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQP 43 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEE
Confidence 35678999999984 544 5799999754
No 335
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=92.67 E-value=0.077 Score=33.90 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEcccCCCCCeeeEEEEec
Q psy534 106 ELRISNIRSQDIGDYTCLATH 126 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n 126 (145)
.|.|.++..+|+|.|.|.+..
T Consensus 77 ~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEECCCCHHHCEEEEEEEEc
Confidence 699999999999999998865
No 336
>KOG3515|consensus
Probab=92.66 E-value=0.57 Score=39.22 Aligned_cols=38 Identities=21% Similarity=0.048 Sum_probs=26.4
Q ss_pred EEEEcccCCCCCeeeEEEEecCCCCcEEEEeCeeEEec
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIHT 143 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~v~~~~~~~~~ 143 (145)
.+.+.++.+.|.|.|.|.|.|..|.......+.++.+|
T Consensus 459 ~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp 496 (741)
T KOG3515|consen 459 LGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSP 496 (741)
T ss_pred ccccceeeeccCCcceeeeccCCCceeeEEeeccccCC
Confidence 44466789999999999999999833333334444433
No 337
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=91.60 E-value=0.7 Score=29.58 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=35.9
Q ss_pred cceeeEEeecCC-Cc-cEEEEecCCCCccccccc-ceEEEecCCCCCC-eeeEEEcccCCCC-CEEEEEEEEEec
Q psy534 12 QMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYK-GRISRVDKESPFG-MASLNLTKIRESD-QGWYECKVVFLN 81 (145)
Q Consensus 12 ~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~-~R~~~~~~~~~~~-~~sL~I~~v~~~D-~G~Y~C~~~~~~ 81 (145)
..+.++|.+.|. |. ..+.|++++..... ... .......++.... ...|.|..-.-.| ...|.|++.+..
T Consensus 19 ~~~tL~Cla~gFyP~~I~V~W~kng~~l~~-g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 19 RKATLVCLATGFYPDHVSLSWKVNGKEVTD-GVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred CCcEEEEEEEeEeCCCcEEEEEECCEECCC-CcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 457889999984 65 47899998754221 211 1111111100011 3334444333223 568999997643
No 338
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=91.51 E-value=0.28 Score=32.11 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=21.3
Q ss_pred eEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 45 RISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 45 R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+..+ .+...++.+|.+...+.- .|.|+|++...
T Consensus 75 sa~i--~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~ 107 (130)
T PF08204_consen 75 SAKI--SELLKGNASLKMDKSDAV-EGNYTCEVTEL 107 (130)
T ss_dssp T-BE--GGGGGTB--EEEEHHHHH--EEEEEEEEET
T ss_pred ccch--hHhhCCCEEEEEcchhcc-ccceEEEEEec
Confidence 4444 345677999999986666 99999999743
No 339
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=91.04 E-value=1.6 Score=26.86 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=36.2
Q ss_pred hhccceeeEEeecCC--Cc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEc---ccCCC---CCEEEEEEEEE
Q psy534 9 SIFQMLSVGDFADDE--DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLT---KIRES---DQGWYECKVVF 79 (145)
Q Consensus 9 ~~~~~~~~~~w~~g~--p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~---~v~~~---D~G~Y~C~~~~ 79 (145)
.++.+..++|.+.|- |. ..++|.++++........ .. ....+++.++. .+..+ +.-.|.|.+.+
T Consensus 12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~--~~-----~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ--PP-----ESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred ccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec--cc-----ccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 346788999999977 43 357999986432111110 01 11234444443 22333 34589999975
Q ss_pred e
Q psy534 80 L 80 (145)
Q Consensus 80 ~ 80 (145)
.
T Consensus 85 ~ 85 (96)
T cd07696 85 P 85 (96)
T ss_pred C
Confidence 4
No 340
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=90.86 E-value=0.36 Score=27.94 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=31.7
Q ss_pred ceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 13 MLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 13 ~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.|.+.|-. ...|.|+|+... .. ..+.+|.+..+.+.-.|.|.|.+..
T Consensus 8 ~V~L~C~~----~tsi~W~kG~~~-~~---------------~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 8 KVFLKCNG----ATNITWKKGKEI-LE---------------VSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred eEEEEecC----CCcEEEecCccc-cc---------------ccccEEeccCcccCCCcceEecCcc
Confidence 35566622 356999995422 10 1166778888889999999998853
No 341
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=90.60 E-value=0.29 Score=29.45 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=18.2
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.+......+.|.|+|.|.+...
T Consensus 63 ~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 63 QLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EEEECHHHhCCCCCEEEEEEeCCC
Confidence 455655555689999999999754
No 342
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=90.34 E-value=1.4 Score=27.45 Aligned_cols=71 Identities=8% Similarity=-0.006 Sum_probs=40.5
Q ss_pred HHhhhccceeeEEeecC-CCc--cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEE
Q psy534 6 AVKSIFQMLSVGDFADD-EDI--PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVF 79 (145)
Q Consensus 6 ~~~~~~~~~~~~~w~~g-~p~--p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~ 79 (145)
.+-..+.++.+.|-+.+ .|. ..+.|+++........+.+....-. .......+.|.- +++|.| .|.|+|..
T Consensus 10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks--~~~~~~~vtftp-treD~g~~fsC~A~L 84 (99)
T cd07689 10 GPLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKS--LETKSLEVTFTP-TIEDIGKVLVCRAKL 84 (99)
T ss_pred CcccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCC--CCCcceeEEEec-chhhCCcEEEEEEEE
Confidence 34467889999999884 455 6788998875422222222110000 001123444544 477777 99999953
No 343
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=89.50 E-value=1.3 Score=27.27 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=19.5
Q ss_pred ccceeeEEeecCC-C-ccEEEEecCCCC
Q psy534 11 FQMLSVGDFADDE-D-IPVYIWYDSYPT 36 (145)
Q Consensus 11 ~~~~~~~~w~~g~-p-~p~~~w~k~~~~ 36 (145)
...+.+.|.+.|. | ...++|++++..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 3457899999984 5 446899999854
No 344
>PHA02982 hypothetical protein; Provisional
Probab=88.26 E-value=1.9 Score=30.69 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=44.0
Q ss_pred hccceeeEEeec-CCCccEEEEecCCCCcccc----------------cccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534 10 IFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAE----------------EYKGRISRVDKESPFGMASLNLTKIRESDQGW 72 (145)
Q Consensus 10 ~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~----------------~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~ 72 (145)
-..++.+-|-++ +.......|++....-+.. ++++...+. .....++|.|.++..+..|-
T Consensus 38 vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~s---v~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 38 VDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALS---VSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred CCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEE---EeccceeEEeccCCcccCCc
Confidence 357788888877 4556678898865421110 122222221 12347889999999999999
Q ss_pred EEEEEEE
Q psy534 73 YECKVVF 79 (145)
Q Consensus 73 Y~C~~~~ 79 (145)
|.|++..
T Consensus 115 Ytc~~ks 121 (251)
T PHA02982 115 FTCEAKD 121 (251)
T ss_pred eEEEEec
Confidence 9999953
No 345
>PHA02982 hypothetical protein; Provisional
Probab=87.09 E-value=1.9 Score=30.65 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=23.8
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+.++|+|+.+..+..|=|+|+|....+
T Consensus 98 ~~STLTIkk~~i~N~GCYtc~~ks~~~ 124 (251)
T PHA02982 98 NSSTFTMKKPDPQNLGCFTCEAKDAEG 124 (251)
T ss_pred cceeEEeccCCcccCCceEEEEecCCC
Confidence 345899999999999999999998775
No 346
>KOG1480|consensus
Probab=87.05 E-value=0.22 Score=41.58 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=40.6
Q ss_pred eeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534 14 LSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 14 ~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
+...|... +.|+.-..|+|++.. +++ ...+ ....+..|+|..+.+.|+|.|+|++.+.
T Consensus 147 ~~l~cr~pe~~paae~~w~k~e~~-~~p--d~n~------~~~~d~~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 147 LQLPCRPPEGDPKAEVEWLKNEVV-IDP--DANV------IRASDHNLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred ccccccCcccchhhhhhccccCCC-CCc--cccc------hhhhcCCccccchhhhhcccceeeeehh
Confidence 34445443 777888899999853 333 1111 1234889999999999999999999654
No 347
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=84.52 E-value=2.8 Score=26.14 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=16.5
Q ss_pred EEEEcccCCCCCe-eeEEEEecCCC
Q psy534 106 ELRISNIRSQDIG-DYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G-~Y~C~a~n~~g 129 (145)
+|.+. +.++|.| .|+|+|.+.++
T Consensus 63 tlt~~-~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 63 TITIT-VDREDHGANFSCETELDLR 86 (100)
T ss_pred EEEEe-cchhhCCcEEEEEEEeccC
Confidence 34543 4567766 69999999876
No 348
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=82.57 E-value=4.1 Score=31.09 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.7
Q ss_pred eeeEEeecCC-Cc-cEEEEecC
Q psy534 14 LSVGDFADDE-DI-PVYIWYDS 33 (145)
Q Consensus 14 ~~~~~w~~g~-p~-p~~~w~k~ 33 (145)
+.+.||+.|- |. ..+.|.|+
T Consensus 217 ~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 217 TTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred ceEEEEEEeEeCCccEEEEEec
Confidence 5789999985 54 45789999
No 349
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=81.76 E-value=1.5 Score=32.22 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecCC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
.| .|.+.+...+++|.|+|..+...
T Consensus 36 TG-~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 36 TG-KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred Cc-eEEeeccccccCCceEEEEEEEe
Confidence 44 79999999999999999998875
No 350
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=75.34 E-value=2.6 Score=27.05 Aligned_cols=32 Identities=16% Similarity=0.444 Sum_probs=23.2
Q ss_pred EEeEEec-CCcEEEEcccCCCCCeeeEEEEecC
Q psy534 96 DVHGVFN-DGTELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 96 ~c~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
.|.+... +.-.|.|.+++.+|.+.|.|..+.-
T Consensus 64 tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e~m 96 (115)
T cd05721 64 NCDGTLGNEQVNFTLQNLRANQTDIYFCKIELM 96 (115)
T ss_pred EEeEeCCCCEEEEEEcCCCHHHCeEEEEEeeec
Confidence 4554433 3346899999999999999976543
No 351
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=74.01 E-value=3.6 Score=24.61 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=15.8
Q ss_pred EEEEcccCCCCCe-eeEEEEecCCC
Q psy534 106 ELRISNIRSQDIG-DYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G-~Y~C~a~n~~g 129 (145)
+|.+. ++++|.| .|+|+|.|+.-
T Consensus 45 ~L~~~-p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 45 QLMLK-VTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEE-CchhhCCCEEEEEEcCccc
Confidence 56664 4455555 59999999863
No 352
>PHA03282 envelope glycoprotein E; Provisional
Probab=73.73 E-value=4.5 Score=32.23 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.8
Q ss_pred eeeEEEcccCCCCCEEEEEEE
Q psy534 57 MASLNLTKIRESDQGWYECKV 77 (145)
Q Consensus 57 ~~sL~I~~v~~~D~G~Y~C~~ 77 (145)
|.+|.|.+++.+|+|.|.-.+
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~ 143 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSV 143 (540)
T ss_pred cceEEEeeccccCCceEEEEe
Confidence 888999999999999999877
No 353
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=72.93 E-value=5.8 Score=25.09 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=21.2
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
-.|.|+.++..|+|.|.-++.+.-|
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~sG 95 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNESG 95 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETTS
T ss_pred ceEEEeecCcccCceEEEEEEcCCC
Confidence 3899999999999999999999887
No 354
>KOG4597|consensus
Probab=71.75 E-value=5.3 Score=31.91 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=36.6
Q ss_pred EEeecCCCccEEEEecCCC---CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534 17 GDFADDEDIPVYIWYDSYP---THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 17 ~~w~~g~p~p~~~w~k~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.|-..|.+.+.++|-+... ..+.+ +-+..++-....-+-|.|.+....|+|.|.|.+..
T Consensus 217 tCg~~G~q~r~V~c~qv~anr~~vv~~----~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 217 TCGVQGRQYRVVTCEQVFANRENVVMR----PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred cccccCCcCceeeeehhhccccceeec----CccccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence 3434477888999965431 11111 12222222223467799999999999999999854
No 355
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=68.30 E-value=22 Score=21.05 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=18.0
Q ss_pred CcEEEEcccCCCCCeeeEEEEe
Q psy534 104 GTELRISNIRSQDIGDYTCLAT 125 (145)
Q Consensus 104 ~~~L~i~~v~~~d~G~Y~C~a~ 125 (145)
...+.......+|+|.+.|.|+
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEEEc
Confidence 3356777888899999999994
No 356
>PHA03189 UL14 tegument protein; Provisional
Probab=66.03 E-value=21 Score=26.94 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=15.8
Q ss_pred ccCCCCCeeeEEEEecCCC
Q psy534 111 NIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 111 ~v~~~d~G~Y~C~a~n~~g 129 (145)
++..+-+|.|.|+..|...
T Consensus 139 ~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEecccceEEEEeccccc
Confidence 5667789999999999863
No 357
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=64.55 E-value=6 Score=30.99 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.4
Q ss_pred cEEEEcccCCCCCeeeEEEEecCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
++|+|+.+..+.+|=|+|+|..+.
T Consensus 346 STLTIkka~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 346 STLTIKKAHINNAGCYEAQAFMGK 369 (500)
T ss_pred ceEEeeeEEEEcCCceEEEEecCc
Confidence 589999999999999999998764
No 358
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=63.80 E-value=9.2 Score=26.05 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.4
Q ss_pred eeeEEEcccCCCCCEEEEEEEEEe
Q psy534 57 MASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 57 ~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
..-|+|.+.+.+|+|.|.-++...
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEEC
Confidence 445899999999999999998643
No 359
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=59.77 E-value=39 Score=20.91 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=18.8
Q ss_pred ccceeeEEeecC-C-C-ccEEEEecCCCC
Q psy534 11 FQMLSVGDFADD-E-D-IPVYIWYDSYPT 36 (145)
Q Consensus 11 ~~~~~~~~w~~g-~-p-~p~~~w~k~~~~ 36 (145)
...+.++|...| . | ...+.|.+++..
T Consensus 19 ~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 19 GSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 456789999987 3 4 346889888753
No 360
>PHA03286 envelope glycoprotein E; Provisional
Probab=58.25 E-value=14 Score=29.32 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=20.5
Q ss_pred CeeeEEEcccCCCCCEEEEEEEEE
Q psy534 56 GMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 56 ~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+..+|++.|+..+|+|.|.|.+..
T Consensus 305 ~i~nL~f~nA~~s~SGLYVfVl~y 328 (492)
T PHA03286 305 DIPSFRLANAQPTDAGLYVVVALY 328 (492)
T ss_pred CCCceeecCCCcccCceEEEEEEE
Confidence 344699999999999999999954
No 361
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=54.76 E-value=20 Score=28.27 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred eeeEEEcccCCCCCEEEEEEE
Q psy534 57 MASLNLTKIRESDQGWYECKV 77 (145)
Q Consensus 57 ~~sL~I~~v~~~D~G~Y~C~~ 77 (145)
..++.+.|++++|.|.|+|.+
T Consensus 80 eYsf~~~Nvs~sdEGrYrCIF 100 (500)
T PHA02914 80 EYSFIEENIGEHEDGDFKCIF 100 (500)
T ss_pred eeEEEecCcccccCCcEEEEE
Confidence 567888999999999999988
No 362
>PHA03282 envelope glycoprotein E; Provisional
Probab=49.19 E-value=23 Score=28.39 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.4
Q ss_pred eeeEEEcccCCCCCEEEEEEEEE
Q psy534 57 MASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 57 ~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+..|+|.|...+++|.|.|++..
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ccceEecCCCcccCceEEEEEEE
Confidence 55799999999999999999953
No 363
>PHA03290 envelope glycoprotein I; Provisional
Probab=45.87 E-value=29 Score=26.50 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.1
Q ss_pred eeeEEEcccCCCCCEEEEEEEEE
Q psy534 57 MASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 57 ~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..-|.|.+.+.+|+|.|.-++..
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~L 150 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQL 150 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEe
Confidence 45689999999999999999954
No 364
>KOG1480|consensus
Probab=45.62 E-value=11 Score=32.12 Aligned_cols=25 Identities=44% Similarity=0.675 Sum_probs=22.5
Q ss_pred cEEEEcccCCCCCeeeEEEEecCCC
Q psy534 105 TELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 105 ~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
..|.+..+...|.|+|+|+|.|-++
T Consensus 183 ~~li~~~arlsd~~nytc~a~ni~~ 207 (909)
T KOG1480|consen 183 HNLIISQARLSDSGNYTCEATNIVA 207 (909)
T ss_pred CCccccchhhhhcccceeeeehhhc
Confidence 3688899999999999999999887
No 365
>COG5475 Uncharacterized small protein [Function unknown]
Probab=42.79 E-value=54 Score=18.16 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=19.8
Q ss_pred cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534 102 NDGTELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
+.|+...+...+. .|.|.|...++.|
T Consensus 15 sGGP~Mtvs~~ss--~Gmy~C~Wf~g~g 40 (60)
T COG5475 15 SGGPRMTVSGYSS--DGMYECRWFDGYG 40 (60)
T ss_pred cCCceEEEecccc--CCeEEEEEecCCC
Confidence 3455677776654 4999999999998
No 366
>PHA03289 envelope glycoprotein I; Provisional
Probab=41.02 E-value=39 Score=25.73 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.4
Q ss_pred eeeEEEcccCCCCCEEEEEEEEEe
Q psy534 57 MASLNLTKIRESDQGWYECKVVFL 80 (145)
Q Consensus 57 ~~sL~I~~v~~~D~G~Y~C~~~~~ 80 (145)
.--|.|.+.+.+|+|.|.-++...
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ld 144 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLA 144 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeC
Confidence 446889999999999999999643
No 367
>KOG4597|consensus
Probab=40.75 E-value=27 Score=28.10 Aligned_cols=24 Identities=38% Similarity=0.345 Sum_probs=22.3
Q ss_pred EEEEcccCCCCCeeeEEEEecCCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVLY 129 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~g 129 (145)
.|.|-+-...|+|-|+|.|.+..|
T Consensus 258 ql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 258 QLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred eEEEcchhhcCCCceeeccccccc
Confidence 588888999999999999999999
No 368
>PHA03052 Hypothetical protein; Provisional
Probab=40.33 E-value=57 Score=18.86 Aligned_cols=29 Identities=10% Similarity=-0.011 Sum_probs=21.4
Q ss_pred hhhccceeeEEeec---CCCccEEEEecCCCC
Q psy534 8 KSIFQMLSVGDFAD---DEDIPVYIWYDSYPT 36 (145)
Q Consensus 8 ~~~~~~~~~~~w~~---g~p~p~~~w~k~~~~ 36 (145)
++++.++.+-|-+. |...+.+.|.-|+..
T Consensus 9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~ 40 (69)
T PHA03052 9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMY 40 (69)
T ss_pred EEccCCceEeEEEEecCCCcceEEEEEeCCcE
Confidence 56888889999876 444667888877754
No 369
>PHA03292 envelope glycoprotein I; Provisional
Probab=39.94 E-value=40 Score=26.31 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.2
Q ss_pred eeeEEEcccCCCCCEEEEEEEEE
Q psy534 57 MASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 57 ~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
..-|.|.+.+.+|+|.|.-++..
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~L 149 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKL 149 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEe
Confidence 46689999999999999999954
No 370
>PHA03042 CD47-like protein; Provisional
Probab=39.11 E-value=17 Score=26.98 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=14.1
Q ss_pred EEEEcccCCCCCeeeEEEEecCC
Q psy534 106 ELRISNIRSQDIGDYTCLATHVL 128 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~~ 128 (145)
+|.+.. ...-.|+|||.|.+..
T Consensus 72 SL~~~f-~~~l~GNYTCEv~~l~ 93 (286)
T PHA03042 72 SLKFNF-SKNLSGNYTCEAINKF 93 (286)
T ss_pred EEEEec-cccCCCceeEEEeecc
Confidence 354432 2334899999998754
No 371
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=38.16 E-value=28 Score=27.71 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=18.1
Q ss_pred CeeeEEEcccCCCCCEEEEEEEEE
Q psy534 56 GMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 56 ~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+.-.|++.|+..+++|.|.|.+..
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEE
T ss_pred CCcceEecCCCcccCceEEEEEEE
Confidence 467799999999999999999943
No 372
>PHA03283 envelope glycoprotein E; Provisional
Probab=34.30 E-value=54 Score=26.74 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=20.9
Q ss_pred CeeeEEEcccCCCCCEEEEEEEEE
Q psy534 56 GMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 56 ~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+.-.|++.|+..+++|.|.|.+..
T Consensus 313 ~~v~L~f~nap~~~SGLYVfVv~y 336 (542)
T PHA03283 313 NRVDLLFKNAPASASGLYVFVLLY 336 (542)
T ss_pred CCcceEeccCCcccCceEEEEEEE
Confidence 357799999999999999999943
No 373
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=31.93 E-value=59 Score=20.80 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=20.1
Q ss_pred cceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534 43 KGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77 (145)
Q Consensus 43 ~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~ 77 (145)
.++..+. ..+-+|.|..-+++|.|-|.-..
T Consensus 93 edgY~Fh-----lEnLsL~Il~SrkE~EGWYfmtl 122 (126)
T PF06214_consen 93 EDGYKFH-----LENLSLEILESRKEDEGWYFMTL 122 (126)
T ss_dssp SSSEEEE-----TTTTEEEETT--GGG-EEEEEEE
T ss_pred ccccEEe-----cccceeehhccccccCceEEEEe
Confidence 4455553 45899999999999999997543
No 374
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=30.25 E-value=56 Score=21.03 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=17.5
Q ss_pred ceeeEEeecCCCccEEEEecCCCCcccccccceE
Q psy534 13 MLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRI 46 (145)
Q Consensus 13 ~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~ 46 (145)
-...+||-.|.+ .+.||+.. +..|.+|-
T Consensus 90 ~~v~LCWk~GE~--~I~~wH~~----d~GFaGRk 117 (120)
T PF09969_consen 90 REVYLCWKEGEP--EIAYWHGL----DEGFAGRK 117 (120)
T ss_pred CEEEEEeCCCCc--ceeeeccC----CcccccCc
Confidence 346689998884 45566653 23566664
No 375
>PHA03291 envelope glycoprotein I; Provisional
Probab=28.83 E-value=77 Score=24.59 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.0
Q ss_pred eeeEEEcccCCCCCEEEEEEEEE
Q psy534 57 MASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 57 ~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
.--|.|.+.+.+|+|.|.-++..
T Consensus 128 ~vLL~i~~P~~~DsGiYvLRV~v 150 (401)
T PHA03291 128 QPLLRARGAARAVVGLYVLRVWV 150 (401)
T ss_pred ceEEEecCCCcccceeEEEEEEe
Confidence 45688999999999999999964
No 376
>PHA03286 envelope glycoprotein E; Provisional
Probab=27.46 E-value=62 Score=25.95 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEcccCCCCCeeeEEEEecC
Q psy534 106 ELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 106 ~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
.|.+.+...+++|-|.|++.-.
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yN 329 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYN 329 (492)
T ss_pred ceeecCCCcccCceEEEEEEEC
Confidence 6889999999999999998754
No 377
>PHA03240 envelope glycoprotein M; Provisional
Probab=27.21 E-value=28 Score=24.98 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=17.5
Q ss_pred CeeeEEEcccCCCCCEEEEE
Q psy534 56 GMASLNLTKIRESDQGWYEC 75 (145)
Q Consensus 56 ~~~sL~I~~v~~~D~G~Y~C 75 (145)
.+.+|.|-+|..+|.|.|--
T Consensus 103 ~NstL~i~~vn~sd~~nYcr 122 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCR 122 (258)
T ss_pred ccceEEEEEEeecCcchhhh
Confidence 38999999999999999843
No 378
>PHA03281 envelope glycoprotein E; Provisional
Probab=25.65 E-value=78 Score=26.08 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=20.7
Q ss_pred CeeeEEEcccCCCCCEEEEEEEEE
Q psy534 56 GMASLNLTKIRESDQGWYECKVVF 79 (145)
Q Consensus 56 ~~~sL~I~~v~~~D~G~Y~C~~~~ 79 (145)
+...|++.+...+++|.|.|.+..
T Consensus 473 n~vdL~F~nApasaSGLYVfVl~y 496 (642)
T PHA03281 473 GGSALKFVDAAESLSGLYVFIIHF 496 (642)
T ss_pred CCcceEeccCCcccCceEEEEEEE
Confidence 356699999999999999999943
No 379
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=23.30 E-value=60 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=18.6
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
++..|++.+...+++|-|.|++.-.
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEET
T ss_pred CCcceEecCCCcccCceEEEEEEEC
Confidence 4457999999999999999998764
No 380
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.86 E-value=1.1e+02 Score=25.01 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.4
Q ss_pred CCcEEEEcccCCCCCeeeEEEEecC
Q psy534 103 DGTELRISNIRSQDIGDYTCLATHV 127 (145)
Q Consensus 103 ~~~~L~i~~v~~~d~G~Y~C~a~n~ 127 (145)
++..|.+.+...+++|-|.|++.-.
T Consensus 313 ~~v~L~f~nap~~~SGLYVfVv~yN 337 (542)
T PHA03283 313 NRVDLLFKNAPASASGLYVFVLLYN 337 (542)
T ss_pred CCcceEeccCCcccCceEEEEEEEC
Confidence 3457999999999999999998764
Done!