RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy534
(145 letters)
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 60.7 bits (147), Expect = 7e-13
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 19 FADDEDIPVYIWYD--SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
+ V+++ + +A EY+GR + + G +L + +R SD+G Y C
Sbjct: 44 YRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCF 103
Query: 77 VVFLNRSPNSHKNGTWFHLDVHGVF 101
R + + L V F
Sbjct: 104 F----RDHSYQEEAAV-ELKVEDPF 123
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 60.5 bits (146), Expect = 3e-12
Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 46/152 (30%)
Query: 23 EDIPVYIWYDSYPTHEA-EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV---- 77
D + ++ + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 48 VDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAP 107
Query: 78 ------VFLN-----RSPNSHKNGT-----------------------WFHLD------- 96
L +G+ W L
Sbjct: 108 GVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT 167
Query: 97 VHGVFNDGTELRISNIRSQDIGDYTCLATHVL 128
+ + N S+ G Y+C + +
Sbjct: 168 PWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 199
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 58.1 bits (140), Expect = 3e-11
Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
+D++I ++ + + Y+ R + + G A+L +T ++ D G Y C + +
Sbjct: 43 EDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG 102
Query: 81 NRSPNS-----HKNGTWFHLDVHGVFNDGTELRIS 110
+ + + V +E ++
Sbjct: 103 GADYKRITVKVNAPYNKINQRILVVDPVTSEHELT 137
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 56.7 bits (136), Expect = 2e-10
Identities = 22/146 (15%), Positives = 37/146 (25%), Gaps = 41/146 (28%)
Query: 20 ADDEDIPVYIWY-----------DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRES 68
A + + W S+ T + R G L + ++
Sbjct: 18 ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE 77
Query: 69 DQGWYECKV-----------VFLNRSPNSH-KNG-----------------TWFHLDVHG 99
D Y C+V L + ++H G
Sbjct: 78 DSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN 137
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
+ T L +S + QD G +TC
Sbjct: 138 IQGGKT-LSVSQLELQDSGTWTCTVL 162
Score = 28.2 bits (62), Expect = 0.98
Identities = 7/126 (5%), Positives = 25/126 (19%), Gaps = 26/126 (20%)
Query: 23 EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
+ + + + + ++ K +L + + G +
Sbjct: 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLP--LHLTLPQALPQYAGSGNLTLALEAKTG 281
Query: 83 SPNSHKN------------------------GTWFHLDVHGVFNDGTELRISNIRSQDIG 118
+ N + + + + + G
Sbjct: 282 KLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAG 341
Query: 119 DYTCLA 124
+ CL
Sbjct: 342 MWQCLL 347
Score = 25.1 bits (54), Expect = 9.4
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 107 LRISNIRSQDIGDYTCLAT 125
L + + G+ T
Sbjct: 259 LPQALPQYAGSGNLTLALE 277
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 56.6 bits (136), Expect = 2e-10
Identities = 24/183 (13%), Positives = 42/183 (22%), Gaps = 65/183 (35%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
E + +++ + +E + + ASL + +R D+G Y C V
Sbjct: 42 HGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTF 101
Query: 81 NRSPNSHK---------------------------------NG------TWF-------- 93
+ S G TW
Sbjct: 102 PQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN 161
Query: 94 ----HLDVHGVFNDGTELRISNIRSQDIGDYTCLATH--------------VLYPDLLVV 135
+ G + + D + TC H V YP + +
Sbjct: 162 TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSI 221
Query: 136 LGS 138
G
Sbjct: 222 SGY 224
Score = 35.1 bits (80), Expect = 0.005
Identities = 6/38 (15%), Positives = 8/38 (21%), Gaps = 3/38 (7%)
Query: 91 TWFHLDV---HGVFNDGTELRISNIRSQDIGDYTCLAT 125
W G +L I + C T
Sbjct: 251 NWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVT 288
Score = 25.8 bits (56), Expect = 5.6
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 59 SLNLTKIRESDQGWYECKV 77
L + + + C V
Sbjct: 269 QLLIRPVDKPINTTLICNV 287
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 52.6 bits (126), Expect = 8e-10
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 17 GDFADDEDIPVYIWYDSYPTHE--AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE 74
+ + V I Y ++ + KGR+ + G AS+N+T ++ SD G Y+
Sbjct: 46 SPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQ 105
Query: 75 CKV 77
CKV
Sbjct: 106 CKV 108
Score = 28.7 bits (64), Expect = 0.39
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYPD 131
+ ++N++ DIG Y C V
Sbjct: 91 INVTNLQLSDIGTYQC---KVKKAP 112
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 53.6 bits (128), Expect = 1e-09
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 14 LSVGDFADDEDIPVYIWYD--SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG 71
+ + + V ++ D ++ Y+GR S + G A+L + + SD G
Sbjct: 37 MELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSG 96
Query: 72 WYECKV 77
Y C
Sbjct: 97 KYLCYF 102
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 52.3 bits (125), Expect = 2e-09
Identities = 22/146 (15%), Positives = 37/146 (25%), Gaps = 41/146 (28%)
Query: 20 ADDEDIPVYIWYD-----------SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRES 68
A + + W + S+ T + R G L + ++
Sbjct: 19 ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE 78
Query: 69 DQGWYECKV-----------VFLNRSPNSH-KNG-----------------TWFHLDVHG 99
D Y C+V L + ++H G
Sbjct: 79 DSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPR-GK 137
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
G L +S + QD G +TC
Sbjct: 138 NIQGGKTLSVSQLELQDSGTWTCTVL 163
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 51.1 bits (122), Expect = 8e-09
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
+ + S + EYK R + S+ + +R SD+G YEC V+ +
Sbjct: 37 KMVLTMMSGDMNIWPEYKNRTIFDITNN----LSIVILALRPSDEGTYECVVLKYEKDAF 92
Query: 86 SHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
++ L V F + I + +I C +
Sbjct: 93 KREHLAEVTLSVKADFPT-PSISDFEIPTSNIRRIICSTS 131
Score = 30.3 bits (68), Expect = 0.13
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 107 LRISNIRSQDIGDYTCLATH 126
+ I +R D G Y C+
Sbjct: 67 IVILALRPSDEGTYECVVLK 86
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 51.2 bits (122), Expect = 8e-09
Identities = 17/151 (11%), Positives = 45/151 (29%), Gaps = 49/151 (32%)
Query: 24 DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------ 77
++ ++ R + ++++ P G A ++ ++ D G Y C V
Sbjct: 33 ELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAW 92
Query: 78 ----VFLN----------RSPNSHKNG----------------TWFHL----------DV 97
+ + R G +W ++
Sbjct: 93 DYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTP 152
Query: 98 HGVFNDGTELRISNIRSQDIGDYTCLATHVL 128
G++ + LR ++ Q +++C+ +
Sbjct: 153 EGLYQVTSVLR---LKPQPSRNFSCMFWNAH 180
Score = 32.3 bits (73), Expect = 0.029
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 2/60 (3%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPD 131
+ + + + + I +++ +D G Y CL D
Sbjct: 36 GIRASLQKVENDTSLQSERATLLEE--QLPLGKALFHIPSVQVRDSGQYRCLVICGAAWD 93
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 46.9 bits (111), Expect = 8e-08
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79
+ + +++ + + +Y+GR+ V + P G SL + ++ D+ Y C+V +
Sbjct: 43 GSDSVTIFLRDSTGDHIQQAKYRGRLK-VSHKVP-GDVSLQINTLQMDDRNHYTCEVTW 99
Score = 29.5 bits (66), Expect = 0.20
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 107 LRISNIRSQDIGDYTCLATH 126
L+I+ ++ D YTC T
Sbjct: 80 LQINTLQMDDRNHYTCEVTW 99
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 48.5 bits (115), Expect = 9e-08
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 19 FADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
E + +++ + +E + + ASL + +R D+G Y C V
Sbjct: 39 ARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFV 98
Query: 79 FLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
L V + E++ + + + C++T
Sbjct: 99 T----FPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVST 141
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 47.8 bits (113), Expect = 2e-07
Identities = 18/166 (10%), Positives = 41/166 (24%), Gaps = 57/166 (34%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV--- 77
+ V I+ S Y+ R+ + G ++ L+++ D+G Y C+
Sbjct: 57 NGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDG--TIRLSRLELEDEGVYICEFATF 114
Query: 78 ----------VFLNRSPNSHKNG-------------------------------TWF--- 93
+ + P + G +W
Sbjct: 115 PTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL 174
Query: 94 --------HLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPD 131
+ +G + R+ R C+ + +
Sbjct: 175 KGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF 220
Score = 32.8 bits (74), Expect = 0.031
Identities = 24/147 (16%), Positives = 33/147 (22%), Gaps = 49/147 (33%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
V W E +E + V S L RE+ Q C V
Sbjct: 166 SVVSWETRLKGEAEYQEIRNPNGTVTVIS-----RYRLVPSREAHQQSLACIVNYHMDRF 220
Query: 78 ---VFLN-----------RSPNSHKNG------------------TWFHLD----VHGVF 101
+ LN N + W L+
Sbjct: 221 KESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA 280
Query: 102 NDGTELRISNIRSQDIGDYTCLATHVL 128
+ T I G Y C AT+ +
Sbjct: 281 QNRTLFFKGPINYSLAGTYICEATNPI 307
Score = 29.7 bits (66), Expect = 0.30
Identities = 8/57 (14%), Positives = 17/57 (29%)
Query: 69 DQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
G + ++ S ++ +R+S + +D G Y C
Sbjct: 56 TNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFA 112
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 47.1 bits (111), Expect = 4e-07
Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 48/148 (32%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKES----PFGMASLNLTKIRESDQGWYECKVV--- 78
+ YP+ + + K + +S +++L + + SDQG Y C
Sbjct: 254 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 313
Query: 79 ---------------FLNRSPNSHKNG----------------------TWFH----LDV 97
F+ W+ L+
Sbjct: 314 MTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES 373
Query: 98 HGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ G L I + +D G+YT + T
Sbjct: 374 NHTIKAGHVLTIMEVSERDTGNYTVILT 401
Score = 38.6 bits (89), Expect = 3e-04
Identities = 13/133 (9%), Positives = 28/133 (21%), Gaps = 50/133 (37%)
Query: 43 KGRISRVDKESPFGMASLNLTKIRESDQGWYECKV----------VFLNR---------- 82
+ R+ + +L + K+ +D G Y+C V++
Sbjct: 71 EQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVS 130
Query: 83 -----------------------SPNSH-------KNGTWFHLDVHGVFNDGTELRISNI 112
N + + ++ I +
Sbjct: 131 DQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY 190
Query: 113 RSQDIGDYTCLAT 125
G C A
Sbjct: 191 MISYAGMVFCEAK 203
Score = 36.3 bits (83), Expect = 0.002
Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 49/156 (31%)
Query: 19 FADDEDIPVYIWYDSYPTHEAEEYKGRI-SRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ +P+++ P + + ++ + + S + + L DQG Y C
Sbjct: 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA 644
Query: 78 -----------------------VFLNRSPNSH------------------------KNG 90
N K+
Sbjct: 645 QDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDN 704
Query: 91 TWFHLDVHGVFNDGT-ELRISNIRSQDIGDYTCLAT 125
D V DG L I +R +D G YTC A
Sbjct: 705 ETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 740
Score = 29.3 bits (65), Expect = 0.40
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 107 LRISNIRSQDIGDYTCLATH 126
L I + D G Y C
Sbjct: 88 LTIPKVIGNDTGAYKCFYRE 107
Score = 28.6 bits (63), Expect = 0.88
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 7/58 (12%)
Query: 20 ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
++ V + YP RIS K+ + S G C+
Sbjct: 152 GSISNLNVSLCA-RYPEKRFVPDGNRISWDSKKG------FTIPSYMISYAGMVFCEA 202
Score = 28.6 bits (63), Expect = 0.94
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 56 GMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTW-FHLDVHG 99
G +L + ++R+ D+G Y C+ + + G
Sbjct: 718 GNRNLTIRRVRKEDEGLYTCQAC------SVLGCAKVEAFFIIEG 756
Score = 28.2 bits (62), Expect = 1.0
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVH 98
L + ++ E D G Y + N ++ L V+
Sbjct: 382 VLTIMEVSERDTGNYTVILT--NPISKEKQSHV-VSLVVY 418
Score = 27.0 bits (59), Expect = 2.7
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 103 DGTELRISNIRSQDIGDYTCLAT 125
+ T + + Y C A
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAV 533
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 45.4 bits (107), Expect = 9e-07
Identities = 26/167 (15%), Positives = 40/167 (23%), Gaps = 67/167 (40%)
Query: 20 ADDEDIPVYIWY----------------DSYPTHEAEEYKGRISRVDKESPFGMASLNLT 63
+ + WY +S + Y GR E + SL
Sbjct: 23 NLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR------EIIYSNGSLLFQ 76
Query: 64 KIRESDQGWYECKV-------------------------------------VFLNRSPNS 86
I D G Y + V L N
Sbjct: 77 MITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND 136
Query: 87 HK-NGTWFH-------LDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
N W + + + + LRI I+ +D G+Y C +
Sbjct: 137 IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS 183
Score = 33.1 bits (75), Expect = 0.019
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 72 WYECKVVFLNRSPNSHKNGT------WFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
WY+ +++ + + ++++G+ L I +D+G YT T
Sbjct: 33 WYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGS-LLFQMITMKDMGVYTLDMT 91
Query: 126 H 126
Sbjct: 92 D 92
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 44.9 bits (106), Expect = 1e-06
Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 41/150 (27%)
Query: 14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRV---DKESPFGMASLNLTKIRESDQ 70
L + F +DI W + + +++ D F +L + ++ DQ
Sbjct: 19 LDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ 78
Query: 71 GWYECKVVFLNRSPNSHKNGTWFHLDVHGV-----------------------------F 101
Y+ + + + F L + +
Sbjct: 79 DIYKVSIY--DTKGKNVLEKI-FDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLY 135
Query: 102 NDGTELR------ISNIRSQDIGDYTCLAT 125
DG L+ + + C A
Sbjct: 136 QDGKHLKLSQRVITHKWTTSLSAKFKCTAG 165
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 45.3 bits (106), Expect = 1e-06
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY 73
+ G++ + ++ DSY ++ GR S + +P +L LT + D G Y
Sbjct: 51 VFKGNYNWQGEGLGFVESDSYKES-FGDFLGRASVANLAAP----TLRLTHVHPQDGGRY 105
Query: 74 ECKVVFLNRSPNSHKNGTWFHLDVHGV 100
C+V + + L V G
Sbjct: 106 WCQVAQWSIRTEFGLDAKSVVLKVTGH 132
Score = 33.7 bits (76), Expect = 0.014
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 83 SPNSHKNGTWFHLDVHG--VFNDGTELRISNIRSQDIGDYTCLAT 125
+ + TWF ++ G F+ L I + D G C
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELA 233
Score = 33.3 bits (75), Expect = 0.017
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 73 YECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
++ + + S + ++ F LR++++ QD G Y C
Sbjct: 58 WQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVA 110
Score = 32.2 bits (72), Expect = 0.046
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 41 EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
E GR S G +L + + +D G C++
Sbjct: 202 EIAGRASFS------GARNLVIRAAKITDAGRVWCEL 232
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 44.5 bits (104), Expect = 2e-06
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
D+ ++Y S + ++ R V SL L ++++D+G Y C++
Sbjct: 48 KDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFH-NDGSLLLQDVQKADEGIYTCEIRLK 106
Query: 81 NRSPNSHKN 89
N S K
Sbjct: 107 NESMVMKKP 115
Score = 34.5 bits (78), Expect = 0.007
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 81 NRSPNSHKNGTWFHLDVHGVF----NDGTELRISNIRSQDIGDYTCLATH 126
N ++ F V NDG+ +++ ++ D G YTC
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTGDISRNDGS-IKLQTVKESDQGIYTCSIYV 222
Score = 32.5 bits (73), Expect = 0.032
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 93 FHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
HL NDG+ L + +++ D G YTC
Sbjct: 73 SHLVGDTFHNDGS-LLLQDVQKADEGIYTCEIR 104
Score = 32.5 bits (73), Expect = 0.032
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 35 PTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
++ R+ S S+ L ++ESDQG Y C +
Sbjct: 179 KFQSLGRFRNRVDLTGDISR-NDGSIKLQTVKESDQGIYTCSI 220
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 43.0 bits (101), Expect = 3e-06
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
D+ + + H + +K R++ P L L + +D G Y C
Sbjct: 42 QDQLLAIC--NADLGWHISPSFKDRVA------PGPGLGLTLQSLTVNDTGEYFCIY 90
Score = 31.0 bits (70), Expect = 0.057
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 101 FNDGTELRISNIRSQDIGDYTCL 123
G L + ++ D G+Y C+
Sbjct: 67 PGPGLGLTLQSLTVNDTGEYFCI 89
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 44.6 bits (105), Expect = 3e-06
Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 50/145 (34%)
Query: 20 ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV-- 77
+ +D W ++ + + +L L + +D Y+C+
Sbjct: 135 PETQDATYLWWVNNQSLPVSPRLQLSNGN---------RTLTLFNVTRNDTASYKCETQN 185
Query: 78 ---------VFLN-----------RSPNSHKNG-----------------TWFHLDVHGV 100
V LN S+++G +WF
Sbjct: 186 PVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGT--F 243
Query: 101 FNDGTELRISNIRSQDIGDYTCLAT 125
EL I NI + G YTC A
Sbjct: 244 QQSTQELFIPNITVNNSGSYTCQAH 268
Score = 41.5 bits (97), Expect = 3e-05
Identities = 23/162 (14%), Positives = 38/162 (23%), Gaps = 56/162 (34%)
Query: 23 EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGM----------ASLNLTKIRESDQGW 72
+ + Y WY + G + + +P ASL + I ++D G+
Sbjct: 26 QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGF 85
Query: 73 YECKV---------------------VFLNRSPNSH------------------------ 87
Y V S NS
Sbjct: 86 YTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWW 145
Query: 88 KNGTWFHLDVHGVF-NDGTELRISNIRSQDIGDYTCLATHVL 128
N + N L + N+ D Y C + +
Sbjct: 146 VNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV 187
Score = 40.7 bits (95), Expect = 6e-05
Identities = 18/147 (12%), Positives = 34/147 (23%), Gaps = 54/147 (36%)
Query: 20 ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79
+ ++ W + + + G +L L + +D Y C +
Sbjct: 491 PEAQNTTYLWWVNGQSLPVSPRLQ---------LSNGNRTLTLFNVTRNDARAYVCGI-- 539
Query: 80 LNRSPNSHKNGTWFHLDVH----------------------------------------G 99
++ S LDV G
Sbjct: 540 --QNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING 597
Query: 100 VF-NDGTELRISNIRSQDIGDYTCLAT 125
+ L I+ I + G Y C +
Sbjct: 598 IPQQHTQVLFIAKITPNNNGTYACFVS 624
Score = 35.3 bits (81), Expect = 0.004
Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 43/108 (39%)
Query: 58 ASLNLTKIRESDQGWYECKV-----------VFLNR---------SPNSHK--------- 88
+L L + +D G YEC + V LN SP+
Sbjct: 342 RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSL 401
Query: 89 ----NG------TWFHLDVHGVF-NDGTELRISNIRSQDIGDYTCLAT 125
+W G EL ISNI ++ G YTC A
Sbjct: 402 SCHAASNPPAQYSWLI---DGNIQQHTQELFISNITEKNSGLYTCQAN 446
Score = 35.3 bits (81), Expect = 0.004
Identities = 16/114 (14%), Positives = 26/114 (22%), Gaps = 47/114 (41%)
Query: 59 SLNLTKIRESDQGWYECKV---------------------------------------VF 79
L + I ++ G Y C+ V
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVA 308
Query: 80 LNRSPNSH-------KNGTWFHLDVHG-VFNDGTELRISNIRSQDIGDYTCLAT 125
L P N + + ND L + ++ D+G Y C
Sbjct: 309 LTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 42.1 bits (99), Expect = 5e-06
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 19 FADDEDIPVYIWYDSYPTHEA--EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
+ D E++ + Y ++ +Y GR S D +S +L L ++ D+G Y+C
Sbjct: 33 WQDQENLVLNEVYLGKEKFDSVHSKYMGRTS-FDSDS----WTLRLHNLQIKDKGLYQCI 87
Query: 77 VVFLNRSPNSHKNGTWFHLDV 97
+ + + L V
Sbjct: 88 IHHKKPTGMIRIHQMNSELSV 108
Score = 28.7 bits (64), Expect = 0.32
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 107 LRISNIRSQDIGDYTCL 123
LR+ N++ +D G Y C+
Sbjct: 71 LRLHNLQIKDKGLYQCI 87
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 42.6 bits (100), Expect = 9e-06
Identities = 22/153 (14%), Positives = 37/153 (24%), Gaps = 60/153 (39%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSP 84
Y W + +P + R +L + + SD+G Y C V + +
Sbjct: 40 LSYRWLLNEFPVFITMD--KRRFVSQTNG-----NLYIANVEASDKGNYSCFVSSPSITK 92
Query: 85 NSHKNG-----------------------------------------------TWFHLDV 97
+ W +
Sbjct: 93 SVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLE 152
Query: 98 -----HGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ G L+I NI+ +D G Y C A
Sbjct: 153 PMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Score = 35.6 bits (82), Expect = 0.002
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 88 KNGTWFHLD----VHGVFNDGTELRISNIRSQDIGDYTCLATHV 127
N + +G L I+N+ + D G+Y+C +
Sbjct: 46 LNEFPVFITMDKRRFVSQTNGN-LYIANVEASDKGNYSCFVSSP 88
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 42.4 bits (100), Expect = 1e-05
Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 61/153 (39%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
P W+ D + +IS D G A L + + +++ G Y K
Sbjct: 35 PEVSWFRDGQVISTSTLPGVQISFSD-----GRAKLTIPAVTKANSGRYSLKATNGSGQA 89
Query: 78 ---------------VFLNRSPNS------------------------HKNGTW------ 92
F+ R + +++G
Sbjct: 90 TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLD 149
Query: 93 FHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
F + G D L I+ +D G Y+ AT
Sbjct: 150 FQISQEG---DLYSLLIAEAYPEDSGTYSVNAT 179
Score = 28.1 bits (63), Expect = 0.78
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 15/75 (20%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSP 84
PV +Y D + ++ +IS+ + SL + + D G Y
Sbjct: 133 PVVKFYRDGAEIQSSLDF--QISQEG-----DLYSLLIAEAYPEDSGTYSVNAT------ 179
Query: 85 NSHKNGTW-FHLDVH 98
NS T L V
Sbjct: 180 NSVGRATSTAELLVQ 194
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 41.8 bits (98), Expect = 2e-05
Identities = 30/145 (20%), Positives = 46/145 (31%), Gaps = 48/145 (33%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
P W D + Y ++ + + ++ LN+T + +D G Y+C
Sbjct: 459 PEISWELDGKKIANNDRY--QVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516
Query: 78 ---VFLN-------RSPNSHK-------------NG------TWFH----LDV---HGVF 101
LN R G W L + VF
Sbjct: 517 EHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF 576
Query: 102 NDGTELRISNI-RSQDIGDYTCLAT 125
+GT L I N+ R+ D YTC+A
Sbjct: 577 PNGT-LIIENVERNSDQATYTCVAK 600
Score = 40.3 bits (94), Expect = 7e-05
Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 48/140 (34%)
Query: 26 PVYIWY---DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV----- 77
PV+ WY + +A R+ +V +L + D G Y C V
Sbjct: 278 PVFRWYKFIEGTTRKQAVVLNDRVKQVSG-------TLIIKDAVVEDSGKYLCVVNNSVG 330
Query: 78 -----VFLN--------RSPNSHK-------------NG------TWFHLDVHGVFNDGT 105
L P + G +W ++
Sbjct: 331 GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV 390
Query: 106 ELRISNIRSQDIGDYTCLAT 125
LRI +++ +D G Y C
Sbjct: 391 -LRIESVKKEDKGMYQCFVR 409
Score = 37.2 bits (86), Expect = 9e-04
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 89 NGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPD-----LLVVLGSFHIH 142
+ +GT L + NI+ + G Y C A + + ++ V H H
Sbjct: 758 EYKDLKKSDNIRVEEGT-LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHH 815
Score = 34.1 bits (78), Expect = 0.010
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 88 KNGTWFHLDVHG----VFNDGTELRISNIRSQDIGDYTCLAT 125
+G D+ V G+ L I + + G++TC A
Sbjct: 656 LDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHAR 697
Score = 32.2 bits (73), Expect = 0.045
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 107 LRISNIRSQDIGDYTCLAT 125
+ + N R + + + +A
Sbjct: 1 MNMPNERLKWLMLFAAVAL 19
Score = 31.4 bits (71), Expect = 0.082
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 100 VFNDGTELRISNIRSQD-IGDYTCLATHVL 128
V G L I + +D Y C H L
Sbjct: 195 VLPSGE-LHIREVGPEDGYKSYQCRTKHRL 223
Score = 29.9 bits (67), Expect = 0.31
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 16/50 (32%)
Query: 91 TWFHLD---------VHGVFNDGTELRISNIRSQDI------GDYTCLAT 125
W D + + +DG L R++D Y CLA
Sbjct: 72 IWIRSDGTAVGDVPGLRQISSDGK-LVFPPFRAEDYRQEVHAQVYACLAR 120
Score = 28.7 bits (64), Expect = 0.66
Identities = 5/19 (26%), Positives = 15/19 (78%)
Query: 59 SLNLTKIRESDQGWYECKV 77
+L++ I+++++G+Y C+
Sbjct: 774 TLHVDNIQKTNEGYYLCEA 792
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 40.3 bits (94), Expect = 3e-05
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 28 YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSH 87
+ E +K RI V + + S+ + + SD G + C V P+
Sbjct: 52 HYAKGQPYIDEVGTFKERIQWV-GDPSWKDGSIVIHNLDYSDNGTFTCDV---KNPPDIV 107
Query: 88 KNGTWFHLDV 97
+ L V
Sbjct: 108 GKTSQVTLYV 117
Score = 29.6 bits (66), Expect = 0.20
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 102 NDGTELRISNIRSQDIGDYTC 122
DG+ + I N+ D G +TC
Sbjct: 79 KDGS-IVIHNLDYSDNGTFTC 98
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 41.4 bits (96), Expect = 3e-05
Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 58/155 (37%)
Query: 26 PVYIWYDSYPTHEAEE---YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV----- 77
IWY + + EE ++ +R+ KE L +D G Y C +
Sbjct: 48 LTLIWYWTRQDRDLEEPINFRLPENRISKEK----DVLWFRPTLLNDTGNYTCMLRNTTY 103
Query: 78 ---------VFLNRSPNSHKNG--------------------------------TWFH-- 94
V S + TW+
Sbjct: 104 CSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC 163
Query: 95 ---LDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
+ + V +G L + G+YTC+ T+
Sbjct: 164 YKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTY 198
Score = 27.9 bits (61), Expect = 1.1
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 11/98 (11%)
Query: 18 DFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ P WY + + + + + +L+ S+ G Y C V
Sbjct: 147 GYFPSSVKPTITWY-----MGCYKIQNFNNVIPEGM-----NLSFLIALISNNGNYTCVV 196
Query: 78 VFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQ 115
+ H T + V G + I +
Sbjct: 197 TYPENGRTFHLTRT-LTVKVVGSPKNAVPPVIHSPNDH 233
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 39.7 bits (93), Expect = 3e-05
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 87 HKNGTWFHLD--VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
K+G +G L+I + D G YTC+A+
Sbjct: 43 RKDGVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIAS 82
Score = 27.0 bits (60), Expect = 1.3
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 59 SLNLTKIRESDQGWYEC 75
L + + D G Y C
Sbjct: 63 VLQIRYAKLGDTGRYTC 79
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 40.6 bits (95), Expect = 4e-05
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 74 ECKVVFLNRSPNSHKNGTWFH----LDVHGVFNDGTELRISNIRSQDIGDYTCLATHV 127
+C + S ++ W L E RI+ R++D G+Y C+ V
Sbjct: 24 QCNL---TSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV 78
Score = 31.0 bits (70), Expect = 0.10
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 102 NDGTELRISNIRS-QDIGDYTCLAT 125
+ TEL I N++ +D G+Y C AT
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNAT 174
Score = 27.5 bits (61), Expect = 1.4
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYEC 75
P ++W E R + LN+ ++ D G YEC
Sbjct: 122 PEWMWRKKENGVFEEISN--SSGRFFIINKENYTELNIVNLQITEDPGEYEC 171
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 40.5 bits (95), Expect = 4e-05
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 88 KNGTWFHL-DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+NG + + + TEL + NI + D G Y C AT
Sbjct: 134 RNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 172
Score = 35.1 bits (81), Expect = 0.003
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
+ + L+I NI D G Y C
Sbjct: 53 MLANNN-LQILNINKSDEGIYRCEGR 77
Score = 27.1 bits (60), Expect = 1.7
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 59 SLNLTKIRESDQGWYECK 76
L + I SD G Y C+
Sbjct: 153 ELTVRNIINSDGGPYVCR 170
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 40.6 bits (95), Expect = 5e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 91 TWFHLDV-------HGVFNDGTELRISNIRSQDIGDYTCLAT 125
+WF + + TEL + NI + D G Y C AT
Sbjct: 37 SWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 78
Score = 37.1 bits (86), Expect = 7e-04
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 25 IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
IP W E K R++ + G +SL++ ++ SD G Y+C
Sbjct: 123 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 174
Score = 34.0 bits (78), Expect = 0.009
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 94 HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
++V G + L I +++ D G Y C A
Sbjct: 147 RIEVKGQHGSSS-LHIKDVKLSDSGRYDCEAA 177
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 38.9 bits (91), Expect = 5e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 91 TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
W V L + I QD G Y+C+ATH
Sbjct: 43 HWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATH 78
Score = 27.0 bits (60), Expect = 0.98
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 59 SLNLTKIRESDQGWYEC 75
L L +I DQG Y C
Sbjct: 58 VLILPEIGPQDQGTYSC 74
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 39.0 bits (91), Expect = 6e-05
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 91 TWFHLD-----VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
W L + +G L I N++ D G Y C +
Sbjct: 44 VWTRLHNGKLPSRAMDFNGI-LTIRNVQPSDAGTYVCTGS 82
Score = 25.9 bits (57), Expect = 3.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 59 SLNLTKIRESDQGWYEC 75
L + ++ SD G Y C
Sbjct: 63 ILTIRNVQPSDAGTYVC 79
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 40.6 bits (95), Expect = 6e-05
Identities = 23/147 (15%), Positives = 37/147 (25%), Gaps = 51/147 (34%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV-------- 77
W+ + + RIS V + +L + D G Y+C V
Sbjct: 33 KDISWFSP-NGEKLSPNQQRISVVWNDDDSS--TLTIYNANIDDAGIYKCVVTAEDGTQS 89
Query: 78 ---VFLN--------RSPNSHK-------------NG------TWFHLDV---------H 98
V + +P + W H
Sbjct: 90 EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF 149
Query: 99 GVFNDGTELRISNIRSQDIGDYTCLAT 125
V ++ L+I I+ D G Y C
Sbjct: 150 IVLSNNY-LQIRGIKKTDEGTYRCEGR 175
Score = 37.2 bits (86), Expect = 0.001
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 98 HGVFNDGTELRISNIRSQDIGDYTCLAT 125
H +D +EL I N+ D +Y C+A
Sbjct: 247 HIFSDDSSELTIRNVDKNDEAEYVCIAE 274
Score = 30.6 bits (69), Expect = 0.13
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
P W D P EE + D S L + + ++D+ Y C
Sbjct: 226 PTMSWTKDGEPIENEEEDDEKHIFSDDSS-----ELTIRNVDKNDEAEYVC 271
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 38.9 bits (91), Expect = 6e-05
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
+ GT L+I N+R D G YTC+AT
Sbjct: 58 IQEQGT-LQIKNLRISDTGTYTCVAT 82
Score = 27.0 bits (60), Expect = 1.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 59 SLNLTKIRESDQGWYEC 75
+L + +R SD G Y C
Sbjct: 63 TLQIKNLRISDTGTYTC 79
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 39.7 bits (93), Expect = 7e-05
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 98 HGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ + +G L I ++ D G Y C A
Sbjct: 55 YSIRENGQLLTILSVEDSDDGIYCCTAN 82
Score = 38.6 bits (90), Expect = 2e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 91 TWFHLDV-------HGVFNDGTELRISNIRSQDIGDYTCLAT 125
+W D V G+ LRI N++ +D G Y C+A
Sbjct: 133 SWIKGDSALRENSRIAVLESGS-LRIHNVQKEDAGQYRCVAK 173
Score = 26.2 bits (58), Expect = 3.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 59 SLNLTKIRESDQGWYEC 75
SL + +++ D G Y C
Sbjct: 154 SLRIHNVQKEDAGQYRC 170
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 40.2 bits (93), Expect = 8e-05
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
+KN +D G L I N +D G Y C +
Sbjct: 164 YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHY 203
Score = 26.3 bits (57), Expect = 4.1
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSH 87
+L + D G Y+C V + + +
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDVRIKND 211
Score = 25.2 bits (54), Expect = 9.7
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 81 NRSPNSHKNGTWFHLD-----VHGVFNDGTELRISNIRSQDIG-DYTCLAT 125
+R + W + ++ +G L I+N S D Y C T
Sbjct: 61 HRYNDKDNVVNWEKIGKTRRPLNRRVKNGD-LWIANYTSNDSHRRYLCTVT 110
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 39.6 bits (92), Expect = 8e-05
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 14 LSVGDFADDEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW 72
L++ +F +DI W S E + + L + + D G
Sbjct: 16 LNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT 75
Query: 73 YECKV 77
Y V
Sbjct: 76 YNVTV 80
Score = 34.6 bits (79), Expect = 0.005
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 88 KNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
K + + +G L+I N+ D G Y
Sbjct: 45 KMKPFLKSGAFEILANGD-LKIKNLTRDDSGTYNVTVY 81
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 40.1 bits (93), Expect = 8e-05
Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 43/142 (30%)
Query: 26 PVYIW-YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV------ 78
W ++ E ++ ++ ++ + +D G+Y C
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRI-LFAFVSSVARNDTGYYTCSSSKHPSQS 316
Query: 79 ---------FLNRSPNSH----KNG-----------------TWFHLDV-----HGVFND 103
F+N + +S TW ++
Sbjct: 317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN 376
Query: 104 GTELRISNIRSQDIGDYTCLAT 125
G + G+Y A
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAE 398
Score = 39.7 bits (92), Expect = 1e-04
Identities = 17/147 (11%), Positives = 29/147 (19%), Gaps = 48/147 (32%)
Query: 20 ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV-- 77
D +W + G+ S+ + K+ E+ G Y +
Sbjct: 72 VDAPGNISCLWVF-------KHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQS 124
Query: 78 -----------------VFLNRSPNSHKNG-----------------TWFHLDVHGVFND 103
++ R P K W D G
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK 184
Query: 104 GTELRIS-----NIRSQDIGDYTCLAT 125
+ + D C A
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCAR 211
Score = 33.9 bits (77), Expect = 0.014
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 13/64 (20%)
Query: 74 ECKVVFLNRSPNSH--KNGTW----------FHLDVHGVFNDGTELRISNIRSQDIGDYT 121
CK V +N + + +S++ D G YT
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF-AFVSSVARNDTGYYT 306
Query: 122 CLAT 125
C ++
Sbjct: 307 CSSS 310
Score = 28.5 bits (63), Expect = 0.89
Identities = 5/54 (9%), Positives = 13/54 (24%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
W +C N + + + + ++ + C A
Sbjct: 441 WKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Score = 27.7 bits (61), Expect = 1.6
Identities = 8/73 (10%), Positives = 18/73 (24%), Gaps = 15/73 (20%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
W + + +++ S++ + G Y N
Sbjct: 356 IRCTWT----------FSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE--NDDAQ 403
Query: 86 SHKNGTWFHLDVH 98
K F L++
Sbjct: 404 FTKM---FTLNIR 413
Score = 26.6 bits (58), Expect = 3.3
Identities = 16/80 (20%), Positives = 21/80 (26%), Gaps = 12/80 (15%)
Query: 26 PVYIWY---DSYPTHEAEEYKGRISRVDKESPFGMA--SLNLTKIRESDQGWYECKVVFL 80
P + W D P E +G +R FG S L +C
Sbjct: 437 PSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY-- 494
Query: 81 NRSPNSHKNGTW-FHLDVHG 99
NS L+ G
Sbjct: 495 ----NSLGTSCETILLNSPG 510
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 39.9 bits (93), Expect = 9e-05
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 88 KNGTWFHL--DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
K+G ++ + D L ++ D G Y C A
Sbjct: 43 KDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE 82
Score = 34.5 bits (79), Expect = 0.007
Identities = 19/122 (15%), Positives = 28/122 (22%), Gaps = 45/122 (36%)
Query: 48 RVDKESPFGMASLNLTKIRESDQGWYEC-----------KVVFLN--------RSPNSHK 88
R+ + + L D+G Y C + L + P
Sbjct: 260 RITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVI 319
Query: 89 NG--------------------TWFHLDV-----HGVFNDGTELRISNIRSQDIGDYTCL 123
W H D L I +++ D G Y C
Sbjct: 320 VVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG-LVIKGVKNGDKGYYGCR 378
Query: 124 AT 125
AT
Sbjct: 379 AT 380
Score = 30.3 bits (68), Expect = 0.22
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 57/124 (45%)
Query: 59 SLNLTKIRESDQGWYEC-----------KVVFLNRS------------------------ 83
SL + + SD+G Y+C +V+ ++
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122
Query: 84 --PNSH--------KNGTWFHLDVHG--------VFNDGTELRISNIR---SQDIGDYTC 122
PN++ K + + DG L + + DI Y C
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGN-LYFTIVTKEDVSDIYKYVC 181
Query: 123 LATH 126
A +
Sbjct: 182 TAKN 185
Score = 27.2 bits (60), Expect = 2.5
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTW-FHLDVH 98
L + ++ D+G+Y C+ N H + + + V+
Sbjct: 361 GLVIKGVKNGDKGYYGCRAT------NEHGDKYFETLVQVN 395
Score = 25.6 bits (56), Expect = 6.2
Identities = 11/67 (16%), Positives = 16/67 (23%), Gaps = 3/67 (4%)
Query: 25 IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFLNR 82
P+ W + R+ P G + +TK SD Y C
Sbjct: 130 KPLITWKKRLSGADPNADVTDFDRRI-TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV 188
Query: 83 SPNSHKN 89
Sbjct: 189 DEEVVLV 195
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 39.9 bits (93), Expect = 9e-05
Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 48/140 (34%)
Query: 26 PVYIWY---DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV----- 77
P + WY + +A R+ +V +L + D G Y C V
Sbjct: 242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSG-------TLIIKDAVVEDSGKYLCVVNNSVG 294
Query: 78 -----VFLN--------RSPNSHK-------------NG------TWFHLDVHGVFNDGT 105
L P + G +W ++
Sbjct: 295 GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV 354
Query: 106 ELRISNIRSQDIGDYTCLAT 125
LRI +++ +D G Y C
Sbjct: 355 -LRIESVKKEDKGMYQCFVR 373
Score = 31.8 bits (72), Expect = 0.053
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 100 VFNDGTELRISNIRSQD-IGDYTCLATHVL 128
V G L I + +D Y C H L
Sbjct: 160 VLPSGE-LHIREVGPEDGYKSYQCRTKHRL 188
Score = 30.7 bits (69), Expect = 0.16
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 16/50 (32%)
Query: 91 TWFHLD---------VHGVFNDGTELRISNIRSQDI------GDYTCLAT 125
W D + + +DG L R++D Y CLA
Sbjct: 37 IWIRSDGTAVGDVPGLRQISSDGK-LVFPPFRAEDYRQEVHAQVYACLAR 85
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 39.9 bits (93), Expect = 1e-04
Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 4/92 (4%)
Query: 37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN---SHKNGTWF 93
A + D + + + +T + E + C + + + G
Sbjct: 74 PMAGSTTIHLYVKDPAHSWNLLAQEVT-VVEGQEAVLPCLITDPALKDSVSLMREGGRQV 132
Query: 94 HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
F+ I + D Y C
Sbjct: 133 LRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTM 164
Score = 33.4 bits (76), Expect = 0.015
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
+ L ++ + QD G Y+C+A+
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVAS 265
Score = 32.6 bits (74), Expect = 0.027
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+ G+ L N ++ G Y C
Sbjct: 48 SPGSTLTTRNATFKNTGTYRCTEL 71
Score = 31.5 bits (71), Expect = 0.064
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 7/60 (11%)
Query: 20 ADDEDIPVYIWY--DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
A + ++ + + + K +L+L + D G Y C
Sbjct: 210 ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVR-----ALSLNAVDFQDAGIYSCVA 264
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction
immunology, IGSF, cell SU receptor signalling,
glycosylation, membrane protein; HET: NAG; 2.90A {Homo
sapiens}
Length = 118
Score = 38.3 bits (89), Expect = 1e-04
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
E + +++ + +E + + ASL + +R D+G Y C V
Sbjct: 42 HGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFV 99
Score = 32.1 bits (73), Expect = 0.021
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYPD-------LLVVLG 137
LR+ +R +D G+YTCL +P L VL
Sbjct: 81 LRMFGLRVEDEGNYTCLFV--TFPQGSRSVDIWLRVLA 116
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 38.3 bits (89), Expect = 1e-04
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHK 88
+ + P + ++GR + + +L L ++ D G Y + + +
Sbjct: 51 VIHSGDPKLVDKRFRGRAELMGNMDH-KVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDV 109
Query: 89 NGTWFH 94
GT
Sbjct: 110 KGTTVT 115
Score = 28.3 bits (63), Expect = 0.49
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 70 QGWYECKVVFLNRSPNSHKNGTW--FHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
+ +VV + P L + L + +++ +D G Y
Sbjct: 43 DYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCN-LLLKDLKPEDSGTYNF 96
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 39.4 bits (91), Expect = 1e-04
Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 4/79 (5%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
P + + R L L + + D+ Y C V
Sbjct: 40 RSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRA- 98
Query: 81 NRSPNSHKNGTWFHLDVHG 99
+ + + L+V
Sbjct: 99 -GAAGTAEATA--RLNVFA 114
Score = 30.9 bits (69), Expect = 0.12
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 101 FNDGTELRISNIRSQDIGDYTCLATH 126
+ L ++ + D DY C+
Sbjct: 73 LDSQGRLVLAEAQVGDERDYVCVVRA 98
Score = 25.2 bits (54), Expect = 8.9
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 99 GVFNDGTELRISNIRSQDIGDYTCLATHVL 128
G+ + + L + + + C A + L
Sbjct: 183 GLLSLTSTLYLRLRKDDRDASFHCAAHYSL 212
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 39.4 bits (92), Expect = 2e-04
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 88 KNGTWFHL-DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+NG + + + TEL + NI + D G Y C AT
Sbjct: 230 RNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 268
Score = 35.9 bits (83), Expect = 0.002
Identities = 15/118 (12%), Positives = 27/118 (22%), Gaps = 50/118 (42%)
Query: 56 GMASLNLTKIRESDQGWYECKV--------------------VFLNRSPNSHK------- 88
+ L + D G Y C+ F + +
Sbjct: 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV-VSPQEFKQGEDA 116
Query: 89 ------NG------TWFHLDV---------HGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ +W + + + + L+I NI D G Y C
Sbjct: 117 EVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-LQILNINKSDEGIYRCEGR 173
Score = 32.9 bits (75), Expect = 0.023
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+ L I N +D G Y C AT
Sbjct: 57 GVRSRLTIYNANIEDAGIYRCQAT 80
Score = 28.2 bits (63), Expect = 1.0
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 59 SLNLTKIRESDQGWYEC 75
L + I SD G Y C
Sbjct: 249 ELTVRNIINSDGGPYVC 265
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 91 TWFHLDV-------HGVFNDGTELRISNIRSQDIGDYTCLAT 125
WF + + + L I +R +D G YTC A
Sbjct: 43 MWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Score = 27.7 bits (62), Expect = 0.70
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 56 GMASLNLTKIRESDQGWYECK 76
G +L + ++R+ D+G Y C+
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQ 82
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 38.7 bits (90), Expect = 2e-04
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 91 TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
WF ++ + +EL + + +D G Y C
Sbjct: 51 QWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVN 85
Score = 36.0 bits (83), Expect = 0.002
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 91 TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
WF ++ + + + G Y C
Sbjct: 151 QWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVY 185
Score = 26.8 bits (59), Expect = 2.8
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 59 SLNLTKIRESDQGWYECKV 77
+ + QG Y C V
Sbjct: 166 LYMVPYVDLEHQGTYWCHV 184
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 39.3 bits (91), Expect = 2e-04
Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 43/142 (30%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV------ 78
W ++ E ++ + + ++ + +D G+Y C
Sbjct: 258 FGLTWELENKALEEGNYFEMSTY-STNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Query: 79 ---------FLNRSPNSH----KNGTWFHLDVHG----------------------VFND 103
F+N + +S F V ++
Sbjct: 317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN 376
Query: 104 GTELRISNIRSQDIGDYTCLAT 125
G + G+Y A
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAE 398
Score = 36.2 bits (83), Expect = 0.002
Identities = 16/142 (11%), Positives = 29/142 (20%), Gaps = 50/142 (35%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
+W + + + V S+ + K+ E+ G Y +
Sbjct: 78 ISCLWVFKHSSLNCQPHFDLQNRGV--------VSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 78 ------------VFLNRSPNSHKNG-----------------TWFHLDVHGVFNDGTELR 108
++ R P K W D G
Sbjct: 130 TILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA 189
Query: 109 I-----SNIRSQDIGDYTCLAT 125
+ + D C A
Sbjct: 190 VVKKEEKVLHELFGTDIRCCAR 211
Score = 27.3 bits (60), Expect = 2.0
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTW-FHLDVHG 99
S++ + G Y N T F L++
Sbjct: 379 SISKFCNHKHQPGEYIFHAE------NDDAQFTKMFTLNIRS 414
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 38.3 bits (89), Expect = 2e-04
Identities = 17/144 (11%), Positives = 40/144 (27%), Gaps = 44/144 (30%)
Query: 26 PVYIWY-DSYP--THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
P W D ++ + + + +++ ++ L +T ++ SD G Y+C V ++
Sbjct: 33 PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92
Query: 83 SPNSHK--------------------------------NG-------TWFH--LDVHGVF 101
+ S G W + +
Sbjct: 93 TFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
G + + ++C A
Sbjct: 153 GHGPQRSLHVPGLNKTSSFSCEAH 176
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 38.7 bits (90), Expect = 3e-04
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 88 KNGTWFHL--DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
NGT + D G + + ++++D G Y C+AT
Sbjct: 43 MNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT 82
Score = 36.4 bits (84), Expect = 0.001
Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 48/126 (38%)
Query: 47 SRVDKESPFGM----ASLNLTKIRESDQGWYECKV----------VFLN--------RSP 84
++D L++ + D+G YEC+ +
Sbjct: 242 RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVI 301
Query: 85 NSH-------------------------KNGTWFHLDVHGVFNDGTELRISNIRSQDIGD 119
++G + G LR S + +D G
Sbjct: 302 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE-LRFSKLVLEDSGM 360
Query: 120 YTCLAT 125
Y C+A
Sbjct: 361 YQCVAE 366
Score = 35.6 bits (82), Expect = 0.003
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 91 TWFHLDVH---GVFNDGTELRISNIRSQDIGDYTCLAT 125
W LD + L I N+ +D G Y C A
Sbjct: 240 KWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 277
Score = 35.2 bits (81), Expect = 0.004
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLATHVL 128
G L I+ + D+G+Y+C AT +
Sbjct: 154 SQTTGN-LYIAKTEASDLGNYSCFATSHI 181
Score = 30.6 bits (69), Expect = 0.15
Identities = 14/92 (15%), Positives = 20/92 (21%), Gaps = 6/92 (6%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
Y W + + R G +L + K SD G Y C
Sbjct: 132 LSYRWLLNEFPNFIPADGRRFV----SQTTG--NLYIAKTEASDLGNYSCFATSHIDFIT 185
Query: 86 SHKNGTWFHLDVHGVFNDGTELRISNIRSQDI 117
+ L + I D
Sbjct: 186 KSVFSKFSQLSLAAEDARQYAPSIKAKFPADT 217
Score = 26.4 bits (58), Expect = 3.9
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 7/42 (16%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWF-HLDVHG 99
L +K+ D G Y+C N H L V
Sbjct: 347 ELRFSKLVLEDSGMYQCVAE------NKHGTVYASAELTVQA 382
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 38.6 bits (90), Expect = 3e-04
Identities = 24/150 (16%), Positives = 41/150 (27%), Gaps = 49/150 (32%)
Query: 25 IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC-------- 75
IP W E K R++ + G +SL++ ++ SD G Y+C
Sbjct: 29 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 88
Query: 76 --KVVFLN--------RSPNSH-------------------------KNGTWFHLDVHG- 99
K ++L+ + + ++
Sbjct: 89 HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTN 148
Query: 100 ----VFNDGTELRISNIRSQDIGDYTCLAT 125
L I+ D G Y C AT
Sbjct: 149 LKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 38.6 bits (90), Expect = 3e-04
Identities = 24/150 (16%), Positives = 38/150 (25%), Gaps = 57/150 (38%)
Query: 25 IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------ 77
W D+ YK + +L + K+ + D G Y C
Sbjct: 226 PIKITWAKDNREIRPGGNYKMTLVENTA-------TLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 78 -------------VFLNRSPNSHK-------------NG------TWFH----------L 95
F+ + S G W+
Sbjct: 279 DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 338
Query: 96 DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ V + L + N+ +D GDYTC A
Sbjct: 339 RMSFVESVAV-LEMYNLSVEDSGDYTCEAH 367
Score = 37.9 bits (88), Expect = 5e-04
Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 54/148 (36%)
Query: 25 IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------ 77
+WY D E+ ++ R+S V+ +A L + + D G Y C+
Sbjct: 320 EIKVLWYKDETEIQESSKF--RMSFVE-----SVAVLEMYNLSVEDSGDYTCEAHNAAGS 372
Query: 78 -------------VFLNRSPNS------------------------HKNGTWFHLDVH-G 99
VF + HK+
Sbjct: 373 ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 432
Query: 100 VFNDGTE--LRISNIRSQDIGDYTCLAT 125
+ ++ + I N+ S DIG+Y C A+
Sbjct: 433 IMSENFLTSIHILNVDSADIGEYQCKAS 460
Score = 37.9 bits (88), Expect = 6e-04
Identities = 21/150 (14%), Positives = 35/150 (23%), Gaps = 57/150 (38%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
WY D + + +A+L + + +S G Y C
Sbjct: 131 LQVSWYKDGELLKDDANLQTSFI-------HNVATLQILQTDQSHVGQYNCSASNPLGTA 183
Query: 78 ---VFLNRSPNSHK------------------------NG------TWFHLDVH------ 98
L S + G TW +
Sbjct: 184 SSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN 243
Query: 99 ---GVFNDGTELRISNIRSQDIGDYTCLAT 125
+ + L + + D G YTC A+
Sbjct: 244 YKMTLVENTATLTVLKVTKGDAGQYTCYAS 273
Score = 35.5 bits (82), Expect = 0.003
Identities = 26/150 (17%), Positives = 38/150 (25%), Gaps = 57/150 (38%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
WY + A YK + +ASL + K+ SD G Y CK
Sbjct: 35 IRIAWYKEHTKLRSAPAYKMQF-------KNNVASLVINKVDHSDVGEYTCKAENSVGAV 87
Query: 78 -------------------------------VFLNRSPNSH--------KNGTWFHLDVH 98
V N K+G D +
Sbjct: 88 ASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDAN 147
Query: 99 ---GVFNDGTELRISNIRSQDIGDYTCLAT 125
++ L+I +G Y C A+
Sbjct: 148 LQTSFIHNVATLQILQTDQSHVGQYNCSAS 177
Score = 34.8 bits (80), Expect = 0.007
Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 47/126 (37%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKV-------------------VFLNRSPN-- 85
+ S + S+++ + +D G Y+CK F+ + +
Sbjct: 429 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIS 488
Query: 86 -------------SHKNG---TWFHLDVHGVFN----------DGTELRISNIRSQDIGD 119
WF V + L+ S + G
Sbjct: 489 TVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGK 548
Query: 120 YTCLAT 125
YTC
Sbjct: 549 YTCQIK 554
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 38.8 bits (89), Expect = 3e-04
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
Y GRI + + + S+ + ++R SD G Y C+
Sbjct: 165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA 204
Score = 38.4 bits (88), Expect = 4e-04
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
I S + + +Y GR + + G +N+ ++ + D G Y+C +
Sbjct: 44 GGCITLISSEGYVSSKYAGRANLTNFPE-NGTFVVNIAQLSQDDSGRYKCGL 94
Score = 35.7 bits (81), Expect = 0.003
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 69 DQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
G Y V+ + N + G LD+ G + I+ +R D G Y C A
Sbjct: 150 QIGLYPVLVIDSSGYVNPNYTGR-IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAG 205
Score = 35.4 bits (80), Expect = 0.004
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
+ A ++GRI ++ G S+ +T +R+ D G Y C S
Sbjct: 261 CDVVVN--TLGKRAPAFEGRILLNPQDKD-GSFSVVITGLRKEDAGRYLCGA----HSDG 313
Query: 86 SHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGD 119
+ G+ V + T R + G
Sbjct: 314 QLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGS 347
Score = 32.7 bits (73), Expect = 0.032
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+Y+GR+S +++ G ++ L ++ D G+Y C
Sbjct: 386 WVKAQYEGRLSLLEEPG-NGTFTVILNQLTSRDAGFYWCLT 425
Score = 32.7 bits (73), Expect = 0.032
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 30 WYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESDQGWYECKV 77
W ++ + +G + SL L + +D+GWY C V
Sbjct: 480 WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGV 528
Score = 32.7 bits (73), Expect = 0.036
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 71 GWYECK-VVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
C VV G L+ + + I+ +R +D G Y C A
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGR-ILLNPQDKDGSFS-VVITGLRKEDAGRYLCGAH 310
Score = 28.4 bits (62), Expect = 1.0
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 107 LRISNIRSQDIGDYTCLAT 125
L ++ + D G Y C
Sbjct: 511 LTLNLVTRADEGWYWCGVK 529
Score = 28.0 bits (61), Expect = 1.4
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 66 RESDQGWYECK-VVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLA 124
C +V + G L+ G N + ++ + S+D G Y CL
Sbjct: 368 LWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG--NGTFTVILNQLTSRDAGFYWCLT 425
Query: 125 TH 126
Sbjct: 426 NG 427
Score = 27.7 bits (60), Expect = 1.7
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 69 DQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
C + + S K +L + I+ + D G Y C
Sbjct: 40 QGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFV-VNIAQLSQDDSGRYKCGLG 95
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 38.6 bits (89), Expect = 3e-04
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 83 SPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ S + + G LR++ + G+YT LA
Sbjct: 288 NETSFIFTEFLEPAANETVRHGC-LRLNQPTHVNNGNYTLLAA 329
Score = 29.7 bits (66), Expect = 0.27
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 99 GVFNDGTELRISNIRSQDIGDYTCLAT 125
G + + + TC A
Sbjct: 207 GGLPSLGLTLANVTSDLNRKNVTCWAE 233
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 36.9 bits (86), Expect = 3e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 88 KNGTWFHLDVHGVFN-----DGTELRISNIRSQDIGDYTCLAT 125
G H G F+ D T L I +++ QD G YT
Sbjct: 41 CGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83
Score = 31.1 bits (71), Expect = 0.038
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
P W H E+ + I D + +L + +++ D G Y +
Sbjct: 35 PEVTWSCGGRKIHSQEQGRFHIENTD-----DLTTLIIMDVQKQDGGLYTLSL 82
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 38.4 bits (89), Expect = 3e-04
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 74 ECKVVFLNRSPNSH--KNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
C + K+GT V L++ N +D G Y+C
Sbjct: 29 SCPPPGGGPMGPTVWVKDGTGLVPSER-VLVGPQRLQVLNASHEDSGAYSCRQR 81
Score = 33.4 bits (76), Expect = 0.015
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 88 KNGTWFHLDVHG----VFNDGTELRISNIRSQDIGDYTCLAT 125
KNG F + + + L + ++ D G+YTC+
Sbjct: 159 KNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVE 200
Score = 33.1 bits (75), Expect = 0.021
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 96 DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ + L + N+ +D G+YTCLA
Sbjct: 282 GANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
Score = 30.0 bits (67), Expect = 0.26
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 53 SPFGMASLNLTKIRESDQGWYEC 75
+ + L+L + D G Y C
Sbjct: 286 TDKELEVLSLHNVTFEDAGEYTC 308
Score = 27.7 bits (61), Expect = 1.3
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
P W E++G + SL + + SD+G Y C V
Sbjct: 153 PSISWL-----KNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199
Score = 26.9 bits (59), Expect = 2.7
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 58 ASLNLTKIRESDQGWYECKV 77
L + D G Y C+
Sbjct: 61 QRLQVLNASHEDSGAYSCRQ 80
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 38.2 bits (88), Expect = 4e-04
Identities = 26/159 (16%), Positives = 41/159 (25%), Gaps = 61/159 (38%)
Query: 22 DEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC----- 75
+E WY D T + E RI + + L + D G Y C
Sbjct: 32 NEHKGTITWYKDDSKTPVSTEQASRIHQHKE-------KLWFVPAKVEDSGHYYCVVRNS 84
Query: 76 --------KVVFLNRSPNSHKNG----------------------------------TWF 93
F+ PN N W+
Sbjct: 85 SYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWY 144
Query: 94 H----LDVHGVF--NDGTELRISNIRSQDIGDYTCLATH 126
L + + L + N+ + G+YTC A++
Sbjct: 145 KDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASY 183
Score = 27.8 bits (61), Expect = 1.3
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 107 LRISNIRSQDI-GDYTCLAT 125
L IS I S+ +TC A
Sbjct: 279 LNISEIESRFYKHPFTCFAK 298
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 38.0 bits (88), Expect = 5e-04
Identities = 15/103 (14%), Positives = 23/103 (22%), Gaps = 36/103 (34%)
Query: 59 SLNLTKIRESDQGWYECKV-----------------VFLNRSPNSHKNG----------- 90
S +T +D G Y C+ + L S G
Sbjct: 49 SYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWK 108
Query: 91 -------TWFHLDVH-GVFNDGTELRISNIRSQDIGDYTCLAT 125
++ F+ + L I G Y C
Sbjct: 109 DKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGM 151
Score = 35.3 bits (81), Expect = 0.003
Identities = 20/112 (17%), Positives = 30/112 (26%), Gaps = 45/112 (40%)
Query: 59 SLNLTKIRESDQGWYEC---------------KVVFLNRSP------------------- 84
+L + K S G Y C V L +P
Sbjct: 132 NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLS 191
Query: 85 -----NSHKNGTW----FHLDVHGV--FNDGTELRISNIRSQDIGDYTCLAT 125
+ G F++ + N +E +I R +D G Y C A
Sbjct: 192 CETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAA 243
Score = 32.6 bits (74), Expect = 0.031
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 74 ECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
C+V + T + L+ RI++ D G+Y C
Sbjct: 22 HCEV-----LHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGL 69
Score = 29.9 bits (67), Expect = 0.25
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHG 99
+ R D G Y C+ N K L V G
Sbjct: 224 EYQILTARREDSGLYWCEAA--TEDGNVLKRSPELELQVLG 262
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 38.1 bits (88), Expect = 5e-04
Identities = 22/163 (13%), Positives = 42/163 (25%), Gaps = 59/163 (36%)
Query: 20 ADDEDIPVYIW--YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
D VY ++ T E+Y + A+L ++ R +D G + C
Sbjct: 235 IKDVSSSVYSTWKRENSQTKLQEKY--NSWHHGDFNYERQATLTISSARVNDSGVFMCYA 292
Query: 78 V------------------FLNRSPNSHKNG-----------------------TWFH-- 94
F+N P + W +
Sbjct: 293 NNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352
Query: 95 ------------LDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ +EL ++ ++ + G YT L +
Sbjct: 353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVS 395
Score = 32.7 bits (74), Expect = 0.034
Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 1/55 (1%)
Query: 72 WYECKVVFLNRSPNSHKNGTW-FHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
WY C S + + + I + + G C A
Sbjct: 440 WYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAY 494
Score = 32.3 bits (73), Expect = 0.044
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 91 TWFH-LDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
W + N E + + G YTC H
Sbjct: 65 KWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKH 101
Score = 30.8 bits (69), Expect = 0.13
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 8/40 (20%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVH 98
K ++ G Y C N H ++ V
Sbjct: 81 EWITEKAEATNTGKYTCT--------NKHGLSNSIYVFVR 112
Score = 25.4 bits (55), Expect = 8.7
Identities = 13/81 (16%), Positives = 19/81 (23%), Gaps = 13/81 (16%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGM------ASLNLTKIRESDQGWYECKVVF 79
P WY T + V + G ++ G ECK
Sbjct: 436 PTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAY- 494
Query: 80 LNRSPNSHKNGTW-FHLDVHG 99
N + F+ G
Sbjct: 495 -----NDVGKTSAYFNFAFKG 510
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 37.5 bits (87), Expect = 5e-04
Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 55/150 (36%)
Query: 25 IPVYIWY--DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC------- 75
W+ + ++ RIS V + +L + D G Y+C
Sbjct: 32 DKDISWFSPNGEKLSPNQQ---RISVVWNDDDSS--TLTIYNANIDDAGIYKCVVTAEDG 86
Query: 76 ----KVVFLN--------RSPNSHK-------------NG------TWFHLDV------- 97
V + +P + W H
Sbjct: 87 TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146
Query: 98 --HGVFNDGTELRISNIRSQDIGDYTCLAT 125
V ++ L+I I+ D G Y C
Sbjct: 147 VRFIVLSNNY-LQIRGIKKTDEGTYRCEGR 175
Score = 36.7 bits (85), Expect = 0.001
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 74 ECKVVFLNRSPN---SHKNGTWF-----HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
C+V + + NG + V +D + L I N D G Y C+ T
Sbjct: 23 LCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 37.8 bits (88), Expect = 5e-04
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 98 HGVFNDGTELRISNIRSQDIGDYTCLAT----HVLYPDLLVVLGSFH 140
V +DGT L +N+ QD G YTC+ + + L V G+ H
Sbjct: 391 IAVLSDGT-LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436
Score = 25.5 bits (56), Expect = 7.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 59 SLNLTKIRESDQGWYEC 75
+LN T + D G Y C
Sbjct: 398 TLNFTNVTVQDTGMYTC 414
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 37.8 bits (88), Expect = 6e-04
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 89 NGTWFHLDVHG---VFNDGTELRISNIRSQDIGDYTCLAT 125
+G VF DGT L + + QD G Y C+A
Sbjct: 423 RKHLVSAKSNGRLTVFPDGT-LEVRYAQVQDNGTYLCIAA 461
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 37.7 bits (87), Expect = 6e-04
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 32 DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSH---- 87
D + + E R + K+ P + L+ + +CKV N +H
Sbjct: 201 DVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE-VTGECNVLLKCKVA--NIKKETHIVWY 257
Query: 88 KNGTWFHLDVHGVFNDGT-ELRISNIRSQDIGDYTCLAT 125
K+ +D F DG L I+ +D G Y +
Sbjct: 258 KDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 296
Score = 34.2 bits (78), Expect = 0.010
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 46 ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFH----------L 95
+S K + S +I E Q + + L+ + +
Sbjct: 100 LSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAK----VNYIFNEKEIFEGPKY 155
Query: 96 DVHGVFNDGT-ELRISNIRSQDIGDYTCLAT 125
+H N G E+ + ++ +D G YT
Sbjct: 156 KMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 186
Score = 30.7 bits (69), Expect = 0.12
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+ T++ ++ D+G Y+C T
Sbjct: 55 GNKTKMTFKDLGMDDLGIYSCDVT 78
Score = 26.9 bits (59), Expect = 2.9
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKV 77
R++ ES + + D G Y C V
Sbjct: 47 PRLEVESKGNKTKMTFKDLGMDDLGIYSCDV 77
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 36.5 bits (84), Expect = 6e-04
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 26 PVYIWYDSYPTHEAEEYKGRIS---RVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
P W+ A + + ++ S + + K +++ G Y C+V
Sbjct: 40 PTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT---- 95
Query: 83 SPNSHKNGTW-FHLDVHG 99
K + F L+VH
Sbjct: 96 --YKDKFDSCSFDLEVHE 111
Score = 33.0 bits (75), Expect = 0.013
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGT-ELRISNIRSQDIGDYTCLAT 125
W++ K + L H T E++I + G+Y C T
Sbjct: 44 WFKGKWMDLASKAGKHLQ---LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT 95
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 37.1 bits (86), Expect = 7e-04
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 74 ECKVVFLNRSPNSH--KNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
EC+ + P K+G+ + G +L I+ R D G Y C+ T
Sbjct: 132 ECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGT 185
Score = 32.1 bits (73), Expect = 0.035
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 12/49 (24%)
Query: 88 KNGTWFHLDVHG------VFNDGTELRISNIRS-----QDIGDYTCLAT 125
K G D + G+ L I D G Y C+A
Sbjct: 45 KGGERVETDKDDPRSHRMLLPSGS-LFFLRIVHGRKSRPDEGVYVCVAR 92
Score = 29.0 bits (65), Expect = 0.51
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 59 SLNLTKIRESDQGWYEC 75
L +T R+SD G Y C
Sbjct: 166 KLMITYTRKSDAGKYVC 182
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 37.4 bits (87), Expect = 7e-04
Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 54/147 (36%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
+WY D E+ ++ R+S V+ +A L + + D G Y C+
Sbjct: 129 IKVLWYKDETEIQESSKF--RMSFVE-----SVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 78 ------------VFLNRSPNSH-KNG-----------------TWFHLDV-------HGV 100
VF + G +W + +
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI 241
Query: 101 FNDG--TELRISNIRSQDIGDYTCLAT 125
++ T + I N+ S DIG+Y C A+
Sbjct: 242 MSENFLTSIHILNVDSADIGEYQCKAS 268
Score = 37.0 bits (86), Expect = 8e-04
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 49/118 (41%)
Query: 56 GMASLNLTKIRESDQGWYECKV-------------------VFLNRSPNS---------- 86
A+L + K+ + D G Y C F+ + S
Sbjct: 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 118
Query: 87 ---------------HKNGTWFHLD----VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+K+ T + V + L + N+ +D GDYTC A
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV-LEMYNLSVEDSGDYTCEAH 175
Score = 33.6 bits (77), Expect = 0.014
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+ L + + D G YTC A+
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYAS 81
Score = 31.2 bits (71), Expect = 0.080
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 56 GMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTW-FHLDVHG 99
+ S+++ + +D G Y+CK N + T + +
Sbjct: 246 FLTSIHILNVDSADIGEYQCKAS------NDVGSYTCVGSITLKA 284
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 37.4 bits (87), Expect = 7e-04
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
V NDGT L S++ D G YTC+ T
Sbjct: 403 VLNDGT-LNFSHVLLSDTGVYTCMVT 427
Score = 28.6 bits (64), Expect = 0.80
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVF 101
+LN + + SD G Y C V N + NS+ + +L+V
Sbjct: 408 TLNFSHVLLSDTGVYTCMVT--NVAGNSNAS---AYLNVSTAG 445
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 36.8 bits (85), Expect = 7e-04
Identities = 15/139 (10%), Positives = 40/139 (28%), Gaps = 47/139 (33%)
Query: 22 DEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
+ + ++ + T +K R+ +DK + +L + + + D+G Y +++
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRV-DLDKTN----GALRIYNVSKEDRGDYYMRMLHE 91
Query: 81 NRSPNSHKNGTWFHLDVHGV-----------------------------FNDGTELR--- 108
++V+ + + LR
Sbjct: 92 TEDQWK------ITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR 145
Query: 109 ---ISNIRSQDIGDYTCLA 124
+S + + C A
Sbjct: 146 QKTMSYQWTNLRAPFKCKA 164
Score = 31.0 bits (70), Expect = 0.077
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 76 KVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
K++ + + F V +G LRI N+ +D GDY
Sbjct: 41 KILEYFPNGKKTVFESVFKDRVDLDKTNGA-LRIYNVSKEDRGDYYMRML 89
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 37.1 bits (86), Expect = 0.001
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 88 KNGTWFHL-DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
KNG D + LRI + D G Y C+A
Sbjct: 348 KNGDVVIPSDYFQIVGGSN-LRILGVVKSDEGFYQCVAE 385
Score = 36.0 bits (83), Expect = 0.003
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 91 TWFHLD--------VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
TW + + + L ISN+ D G YTC+ T
Sbjct: 254 TWLRGEEVIQLRSKKYSLLGGSN-LLISNVTDDDSGTYTCVVT 295
Score = 35.6 bits (82), Expect = 0.003
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
V G L+IS ++ D G Y C A
Sbjct: 173 VLPSGA-LQISRLQPGDSGVYRCSAR 197
Score = 31.3 bits (71), Expect = 0.080
Identities = 11/48 (22%), Positives = 13/48 (27%), Gaps = 13/48 (27%)
Query: 91 TWFH--------LDVHGVFNDGTELRISNI-----RSQDIGDYTCLAT 125
W +D L I NI D G Y C A+
Sbjct: 55 KWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEAS 102
Score = 26.3 bits (58), Expect = 4.2
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 59 SLNLTKIRESDQGWYECKVV 78
+L + + +SD+G+Y+C
Sbjct: 366 NLRILGVVKSDEGFYQCVAE 385
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 36.9 bits (85), Expect = 0.001
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 98 HGVFNDGTELRISNIRSQDIGDYTCLAT 125
V T + ++ +D G YTC+ +
Sbjct: 61 DRVTFLPTGITFKSVTREDTGTYTCMVS 88
Score = 36.5 bits (84), Expect = 0.001
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 84 PNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
P + K+ F + + EL + + D G+Y+C A
Sbjct: 150 PTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Score = 31.9 bits (72), Expect = 0.042
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
Y W+ D + S L + SD G Y C
Sbjct: 138 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 36.9 bits (85), Expect = 0.001
Identities = 11/79 (13%), Positives = 20/79 (25%), Gaps = 4/79 (5%)
Query: 50 DKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN---SHKNGTWFHLDVHGVFNDGTE 106
D P+ + + + + E C + G + F+
Sbjct: 87 DPARPWNVLAQEVV-VFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 107 LRISNIRSQDIGDYTCLAT 125
I + DY C A
Sbjct: 146 FTIHRAKFIQSQDYQCSAL 164
Score = 33.0 bits (75), Expect = 0.023
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 87 HKNGTWFHLDVHGVFNDGTE-----LRISNIRSQDIGDYTCLAT 125
N T + F++ L + + Q G+Y+C+A+
Sbjct: 222 QHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVAS 265
Score = 32.2 bits (73), Expect = 0.041
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 94 HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
H ++ + L +N Q+ G Y C
Sbjct: 41 HWTLYSDGSSSI-LSTNNATFQNTGTYRCTEP 71
Score = 31.5 bits (71), Expect = 0.084
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 20 ADDEDIPVYIWY--DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
A D+ ++ ++ ++ +R K +LNL ++ G Y C
Sbjct: 210 ASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVL-----TLNLDQVDFQHAGNYSCVA 264
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 35.5 bits (82), Expect = 0.001
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 88 KNGTWFHLD----VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
KNG F + + V N L + ++ D G+YTC+
Sbjct: 44 KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 85
Score = 29.7 bits (67), Expect = 0.11
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 25 IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+P W + + G R SL + + SD+G Y C V
Sbjct: 37 MPTMRWLKNGKEFKQEHRIGGYKVRNQH------WSLIMESVVPSDKGNYTCVV 84
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 36.3 bits (84), Expect = 0.001
Identities = 14/103 (13%), Positives = 18/103 (17%), Gaps = 36/103 (34%)
Query: 59 SLNLTKIRESDQGWYECKV--------VFLN---------------------------RS 83
K +D G Y C+ V L
Sbjct: 52 PSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWK 111
Query: 84 PNSHKNGTWFHLDVH-GVFNDGTELRISNIRSQDIGDYTCLAT 125
T+F + I GDY C
Sbjct: 112 DKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGN 154
Score = 30.6 bits (69), Expect = 0.100
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 91 TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH----------VLYPDLLVVLGSFH 140
WFH + + + + D G+YTC VL+ L++
Sbjct: 38 QWFH-NGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLE 96
Query: 141 IHTG 144
G
Sbjct: 97 FQEG 100
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 36.8 bits (85), Expect = 0.001
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 74 ECKVVFLNRSPNSH--KNGTWFHLDVHGVFNDGT-ELRISNIRSQDIGDYTCLAT 125
+CKV + + + K+ +D F DG L I+ +D G Y +
Sbjct: 27 KCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 81
Score = 33.0 bits (75), Expect = 0.022
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 87 HKNGTWF----HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
KN H ++ I+ + + D G Y +
Sbjct: 257 LKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 299
Score = 32.2 bits (73), Expect = 0.047
Identities = 10/86 (11%), Positives = 21/86 (24%), Gaps = 13/86 (15%)
Query: 49 VDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFH--------LDVHGV 100
++ +++ +L ++ V + W H V
Sbjct: 103 MEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLK----VNWSHNGSAIRYSDRVKTG 158
Query: 101 FNDGT-ELRISNIRSQDIGDYTCLAT 125
L+I+ D G Y
Sbjct: 159 VTGEQIWLQINEPTPNDKGKYVMELF 184
Score = 29.5 bits (66), Expect = 0.40
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 51 KESPFGMASLNLTKIRESDQGWYECKVV 78
K A + + +D G Y V
Sbjct: 272 KFEAGRTAYFTINGVSTADSGKYGLVVK 299
Score = 27.6 bits (61), Expect = 1.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 56 GMASLNLTKIRESDQGWYECKV 77
G+ +L +T+ + D G YE +
Sbjct: 59 GICTLLITEFSKKDAGIYEVIL 80
Score = 26.4 bits (58), Expect = 3.3
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKV 77
RV L + + +D+G Y ++
Sbjct: 153 DRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 36.7 bits (85), Expect = 0.001
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 88 KNGTWFHL--DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
NGT + D DG+ L + ++QD G Y C+AT
Sbjct: 44 LNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIAT 83
Score = 35.6 bits (82), Expect = 0.003
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLATHVL 128
G L I+ + D+G+YTC+ T+ +
Sbjct: 153 SQETGN-LYIAKVEKSDVGNYTCVVTNTV 180
Score = 35.2 bits (81), Expect = 0.004
Identities = 21/125 (16%), Positives = 29/125 (23%), Gaps = 44/125 (35%)
Query: 44 GRISRVDKESPFGMASLNLTKIRESDQGWYECKV----------VFLN--------RSPN 85
G+ L + ++ D G YEC L + N
Sbjct: 244 GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIN 303
Query: 86 SH-------------------------KNGTWFHLDVHGVFNDGTELRISNIRSQDIGDY 120
KNG GT L I+ + D G Y
Sbjct: 304 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT-LNITIVNLSDAGMY 362
Query: 121 TCLAT 125
C+A
Sbjct: 363 QCVAE 367
Score = 35.2 bits (81), Expect = 0.004
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 91 TWFHLD-------VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
W D ++G L I N + +D G Y C+A
Sbjct: 238 LWRRADGKPIARKARRHKSNGI-LEIPNFQQEDAGSYECVAE 278
Score = 25.9 bits (57), Expect = 6.4
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWF-HLDVHG 99
+LN+T + SD G Y+C N H L V
Sbjct: 348 TLNITIVNLSDAGMYQCVAE------NKHGVIFSSAELSVIA 383
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 36.5 bits (84), Expect = 0.001
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 74 ECKVVFLNRSPNSHKNGTWFH--LDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
C + N S W + + G + G+Y+C+
Sbjct: 19 TCSL---NDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFL 69
Score = 30.4 bits (68), Expect = 0.13
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 25 IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKI-RESDQGWYEC 75
+ + WY + + G SR S G + L++ + E+D G Y C
Sbjct: 113 VTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRC 164
Score = 30.0 bits (67), Expect = 0.22
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 103 DGTELRISNI-RSQDIGDYTCLAT 125
+EL I N+ D G Y C T
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGT 167
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 36.3 bits (84), Expect = 0.001
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 91 TWFHLDV-------HGVFNDGTELRISNIRSQDIGDYTCLAT 125
W DG L+I N R +D G Y C+A
Sbjct: 143 YWIKNQTKVDMSNPRYSLKDGF-LQIENSREEDQGKYECVAE 183
Score = 28.6 bits (64), Expect = 0.55
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 98 HGVFNDGTELRISNI----RSQDIGDYTCLAT 125
+ V + I I +D Y C+A
Sbjct: 54 YTVLEQPGGISILRIEPVRAGRDDAPYECVAE 85
Score = 27.8 bits (62), Expect = 1.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 59 SLNLTKIRESDQGWYEC 75
L + RE DQG YEC
Sbjct: 164 FLQIENSREEDQGKYEC 180
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 36.3 bits (84), Expect = 0.001
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 91 TWFHLDV---------HGVFNDGTELRISNIRSQDIGDYTCLAT-----HVLYPDLLVVL 136
+W + + + + L+I NI D G Y C + + D++V++
Sbjct: 129 SWLYHNEEVTTISDNRFAMLANNN-LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
Score = 34.8 bits (80), Expect = 0.005
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+ L I N +D G Y C AT
Sbjct: 55 GVRSRLTIYNANIEDAGIYRCQAT 78
Score = 27.1 bits (60), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 59 SLNLTKIRESDQGWYECK 76
+L + I +SD+G Y C+
Sbjct: 152 NLQILNINKSDEGIYRCE 169
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 36.7 bits (85), Expect = 0.001
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 96 DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ +G L ++ +D G YTC A
Sbjct: 293 NGSVSVRNGD-LFFKKVQVEDGGVYTCYAM 321
Score = 27.5 bits (61), Expect = 1.7
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDG 104
L K++ D G Y C + + N + L V+ G
Sbjct: 302 DLFFKKVQVEDGGVYTCYAM--GETFNETLS---VELKVYNFTLHG 342
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 36.5 bits (84), Expect = 0.001
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
+ + L + ++ D G+YTC+
Sbjct: 67 LRHQQWSLVMESVVPSDRGNYTCVVE 92
Score = 33.4 bits (76), Expect = 0.013
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTE---LRISNIRSQDIGDYTCLAT 125
W K V +N S + + + LR++N+ +D G+Y C AT
Sbjct: 148 WL--KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202
Score = 31.4 bits (71), Expect = 0.078
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 6/57 (10%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
E + D P + S L L + E D G Y C+
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISES------VEADVRLRLANVSERDGGEYLCRA 201
Score = 29.5 bits (66), Expect = 0.29
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 25 IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
P W + G R + SL + + SD+G Y C V
Sbjct: 44 TPSISWLKNGREFRGEHRIGGIKLRHQQ------WSLVMESVVPSDRGNYTCVV 91
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 35.4 bits (81), Expect = 0.001
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 26 PVYIWYDSYPTHEAEEYKGRIS---RVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
PV W+ + + + D+ S + L++T + + G Y C+V
Sbjct: 37 PVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVS---- 92
Query: 83 SPNSHKNGT-WFHLDVH 98
K F+L VH
Sbjct: 93 --TKDKFDCSNFNLTVH 107
Score = 31.1 bits (70), Expect = 0.053
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 106 ELRISNIRSQDIGDYTCLAT 125
EL I++ + G Y C +
Sbjct: 73 ELHITDAQPAFTGSYRCEVS 92
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 36.4 bits (84), Expect = 0.001
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 88 KNGTWFHLD----VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
KNG F + + V N L + ++ D G+YTC+
Sbjct: 55 KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Score = 35.3 bits (81), Expect = 0.003
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLDVHGVFN--DGTELRISNIRSQDIGDYTCLAT 125
W K V N S + + H N + L + N+ D G+Y C +
Sbjct: 152 WI--KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205
Score = 31.8 bits (72), Expect = 0.053
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 26 PVYIWY--DSYPTHEAEEYKGRISRVDKESPF---GMASLNLTKIRESDQGWYECKV 77
P W + +V K S L L + E+D G Y CKV
Sbjct: 148 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 204
Score = 29.9 bits (67), Expect = 0.23
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
P W + + G R SL + + SD+G Y C V
Sbjct: 49 PTMRWLKNGKEFKQEHRIGGYKVRNQH------WSLIMESVVPSDKGNYTCVV 95
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 36.6 bits (84), Expect = 0.002
Identities = 21/154 (13%), Positives = 34/154 (22%), Gaps = 60/154 (38%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
W+ + E + R+ D +L L + D G Y C
Sbjct: 55 INLTWHKNDSARTVPGEEETRMWAQD-------GALWLLPALQEDSGTYVCTTRNASYCD 107
Query: 78 -------VFLNRSPNSHKNG------------------------------TWFHLDV--- 97
VF N W+ +
Sbjct: 108 KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLD 167
Query: 98 -----HGVFNDGTELRISNIRSQDIGDYTCLATH 126
T L + ++ +D G Y C+ T
Sbjct: 168 KDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTF 201
Score = 30.0 bits (67), Expect = 0.24
Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 2/56 (3%)
Query: 72 WYECKVVFLNRSPNSH-KNGTWFHLDVHGVFNDGTELRISNIRSQDIG-DYTCLAT 125
W + P G + L + +D+ D+ C+
Sbjct: 264 WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVH 319
Score = 29.3 bits (65), Expect = 0.44
Identities = 7/67 (10%), Positives = 16/67 (23%), Gaps = 8/67 (11%)
Query: 19 FADDEDIPVYIWY-------DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG 71
+ +W+ +S R + + L + D
Sbjct: 252 LGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLH 311
Query: 72 W-YECKV 77
++C V
Sbjct: 312 MDFKCVV 318
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 36.1 bits (83), Expect = 0.002
Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 17/120 (14%)
Query: 18 DFADDEDIPVYIWY---DSYPTHEAEEYKGRISRVDKESPFGM------ASLNLTKIRES 68
+F E + W S E K V SL L+ ++
Sbjct: 21 EFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKME 80
Query: 69 DQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGT-ELRISNIRSQDIGDYTCLATHV 127
D G Y ++ ++ + + + ++ + Q++ L V
Sbjct: 81 DTGSYRAQI-------STKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSV 133
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 35.0 bits (81), Expect = 0.002
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 91 TWFH----LDVHGVF-----NDGTELRISNIRSQDIGDYTCLAT 125
TW L + IS++++ D G+Y+ +
Sbjct: 47 TWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 90
Score = 25.8 bits (57), Expect = 3.0
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
+R + ++ ++ ++ SD+G Y V
Sbjct: 59 ARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 90
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 35.3 bits (81), Expect = 0.002
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 23 EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
D + W + ++KGR+ R+D +S +L ++K+++ D Y +V+
Sbjct: 43 FDQKIVEWDSRKSKYFESKFKGRV-RLDPQS----GALYISKVQKEDNSTYIMRVLKKTG 97
Query: 83 SPNSHKNGTWFHLDVH 98
+ K L V
Sbjct: 98 NEQEWK----IKLQVL 109
Score = 29.1 bits (65), Expect = 0.30
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 4/46 (8%)
Query: 97 VHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIH 142
V G L IS ++ +D Y VL +
Sbjct: 66 VRLDPQSGA-LYISKVQKEDNSTYIM---RVLKKTGNEQEWKIKLQ 107
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 36.1 bits (83), Expect = 0.002
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 98 HGVFNDGTELRISNIRSQDIGDYTCLAT 125
F+ + S++ +D G+YTC+ +
Sbjct: 59 RVTFSSSG-ITFSSVTRKDNGEYTCMVS 85
Score = 34.9 bits (80), Expect = 0.004
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 83 SPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
K F + +L + + D G+Y C A
Sbjct: 147 LTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
Score = 31.1 bits (70), Expect = 0.077
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGM-ASLNLTKIRESDQGWYEC 75
Y W+ D A+ K R + L + D G Y C
Sbjct: 135 SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYC 186
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 36.0 bits (83), Expect = 0.002
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
+ + G L ISN+ D G+Y C+A
Sbjct: 166 IVDGGN-LLISNVEPIDEGNYKCIAQ 190
Score = 35.2 bits (81), Expect = 0.003
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 88 KNGTWFHLDVHG----VFNDGT---ELRISNIRSQDIGDYTCLAT 125
K+G + F DG + + QD G+Y C+A
Sbjct: 45 KDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAK 89
Score = 29.1 bits (65), Expect = 0.43
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
P IW D P + + S + G +L ++ + D+G Y+C
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG--NLLISNVEPIDEGNYKC 187
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 35.7 bits (82), Expect = 0.002
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 32 DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSH---- 87
D + + E R + K+ P + L+ + +CKV N +H
Sbjct: 96 DVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE-VTGECNVLLKCKVA--NIKKETHIVWY 152
Query: 88 KNGTWFHLDVHGVFNDGT-ELRISNIRSQDIGDYTCLAT 125
K+ +D F DG L I+ +D G Y +
Sbjct: 153 KDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191
Score = 31.4 bits (71), Expect = 0.056
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 15/73 (20%)
Query: 64 KIRESDQGWYECKVVFLNRSPNSHKNGTWFHLD----------VHGVFNDGT-ELRISNI 112
+I E Q + + L+ + + + +H N G E+ + +
Sbjct: 13 EILEKGQVRFWMQAEKLSGNAK----VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 68
Query: 113 RSQDIGDYTCLAT 125
+ +D G YT
Sbjct: 69 QDEDEGTYTFQLQ 81
Score = 30.3 bits (68), Expect = 0.17
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ + E +YK I R G+ + + K+++ D+G Y ++
Sbjct: 33 AKVNYIFNEKEIFEGPKYKMHIDRNT-----GIIEMFMEKLQDEDEGTYTFQL 80
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 34.3 bits (79), Expect = 0.002
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 103 DGTELRISNIRSQDIGDYTCLATHVL 128
G E+ + + D G Y C+ +
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPS 77
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 35.6 bits (82), Expect = 0.003
Identities = 14/103 (13%), Positives = 22/103 (21%), Gaps = 36/103 (34%)
Query: 59 SLNLTKIRESDQGWYECKV--------VFLN---------------------------RS 83
S + D G Y C+ V L
Sbjct: 55 SYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWK 114
Query: 84 PNSHKNGTWFHLDVH-GVFNDGTELRISNIRSQDIGDYTCLAT 125
+ T+ F+ ++ I +D G Y C
Sbjct: 115 NTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGL 157
Score = 34.1 bits (78), Expect = 0.007
Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 10/72 (13%)
Query: 83 SPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH----------VLYPDL 132
+ + T + + + + + I D G+Y C V L
Sbjct: 32 AYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWL 91
Query: 133 LVVLGSFHIHTG 144
L+ +
Sbjct: 92 LLQAPRWVFKEE 103
Score = 26.4 bits (58), Expect = 3.0
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 58 ASLNLTKIRESDQGWYECKVVFLNRSPNS 86
+ + K D G Y C+ + +++ +S
Sbjct: 137 SDFYIPKATLKDSGSYFCRGLVGSKNVSS 165
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 34.2 bits (79), Expect = 0.003
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 88 KNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
NG EL I + +D G YTCLA
Sbjct: 47 LNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAE 84
Score = 27.3 bits (61), Expect = 0.85
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 56 GMASLNLTKIRESDQGWYECK 76
G+A L++ D G Y C
Sbjct: 62 GVAELHIQDALPEDHGTYTCL 82
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 34.6 bits (79), Expect = 0.003
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGM--------ASLNLTKIRESDQGW 72
+ +++ + + R+S V + G A+L L + D+G
Sbjct: 48 NHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGN 107
Query: 73 YECKV 77
Y C+
Sbjct: 108 YTCEF 112
Score = 32.6 bits (74), Expect = 0.017
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 102 NDGTELRISNIRSQDIGDYTCLATHVLYPD 131
D T L + + +D G+YTC +P
Sbjct: 91 QDAT-LALHGLTVEDEGNYTCEFA--TFPK 117
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 34.8 bits (79), Expect = 0.003
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 31 YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
++ GR S + +P +L LT + D G Y C+V
Sbjct: 69 ESDSYKESFGDFLGRASVANLAAP----TLRLTHVHPQDGGRYWCQV 111
Score = 26.7 bits (58), Expect = 2.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYPD 131
LR++++ QD G Y C
Sbjct: 94 LRLTHVHPQDGGRYWCQVAQWSIRT 118
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 35.3 bits (81), Expect = 0.003
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 46/109 (42%)
Query: 58 ASLNLTKIRESDQGWYECKV--------VFLNRSPNS----------------------- 86
+SLN+ + D G Y+C+ V+L +
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGW 110
Query: 87 ----------HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+K+G + + + I+N +D G Y C
Sbjct: 111 RNWDVYKVIYYKDGEALKY-----WYENHNISITNATVEDSGTYYCTGK 154
Score = 31.4 bits (71), Expect = 0.058
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 91 TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
WFH + + L I N + +D G+Y C
Sbjct: 38 KWFH-NGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ 72
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 35.6 bits (82), Expect = 0.003
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 91 TWFHLDV------HGVFNDGTELRISNIRSQDIGDYTCLAT 125
W+ N LRI+N+ +D G+Y CLA+
Sbjct: 255 AWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLAS 295
Score = 32.9 bits (75), Expect = 0.024
Identities = 4/44 (9%), Positives = 10/44 (22%), Gaps = 10/44 (22%)
Query: 91 TWFH---------LDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
W + + T + + + Y C +
Sbjct: 345 QWMVNGEPLQSAPPNPNREVAGDT-IIFRDTQISSRAVYQCNTS 387
Score = 32.1 bits (73), Expect = 0.049
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 100 VFNDGTELRISNIRSQDI-GDYTCLAT 125
++G L SN+ QD+ DY+C A
Sbjct: 167 QGHNGD-LYFSNVMLQDMQTDYSCNAR 192
Score = 31.4 bits (71), Expect = 0.079
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 88 KNGTWFHLD----VHGVFNDGT---ELRISNIRSQDIGDYTCLAT 125
+N +F++ V GT + R + G+Y C A
Sbjct: 53 RNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFAR 97
Score = 27.9 bits (62), Expect = 1.2
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 7/52 (13%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
P W E + ++E ++ + S + Y+C
Sbjct: 342 PTVQWM-----VNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNT 386
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 34.2 bits (78), Expect = 0.003
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
IW + Y + R S G SL + D G Y C V
Sbjct: 48 IWTNGY--TVTHQRNSRYQLKGNIS-EGNVSLTIENTVVGDGGPYCCVV 93
Score = 24.9 bits (54), Expect = 6.7
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 107 LRISNIRSQDIGDYTC 122
L I N D G Y C
Sbjct: 76 LTIENTVVGDGGPYCC 91
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 34.3 bits (79), Expect = 0.004
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
N L I + S+D G YTC+AT
Sbjct: 63 NGVHSLIIEPVTSRDAGIYTCIAT 86
Score = 29.6 bits (67), Expect = 0.13
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
P W D P + +E+ G+ SL + + D G Y C
Sbjct: 39 PDLSWQLDGKPVRPD----SAHKMLVREN--GVHSLIIEPVTSRDAGIYTCI 84
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 33.5 bits (77), Expect = 0.004
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 91 TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
WF ++ + + + G Y C
Sbjct: 36 QWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVY 70
Score = 26.1 bits (58), Expect = 1.8
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 58 ASLNLTKIRESDQGWYECKV 77
+ + QG Y C V
Sbjct: 50 KLYMVPYVDLEHQGTYWCHV 69
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 33.8 bits (78), Expect = 0.004
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 88 KNGTWFHLDVHGVF----NDGTELRISNIRSQDIGDYTCLAT 125
NG D L +R+ D G Y C+A
Sbjct: 41 LNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK 82
Score = 31.5 bits (72), Expect = 0.031
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
P WY + + + ++ S G+ SL +R SD G Y C
Sbjct: 35 PDVSWYLNGRTVQSDDLH--KMI----VSEKGLHSLIFEVVRASDAGAYACV 80
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 34.4 bits (79), Expect = 0.005
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 93 FHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
++ V G L + ++ D G Y C
Sbjct: 49 LYIPVSEQHWIGF-LSLKSVERSDAGRYWCQVE 80
Score = 32.5 bits (74), Expect = 0.025
Identities = 17/141 (12%), Positives = 30/141 (21%), Gaps = 47/141 (33%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
P W D ++ + + L+L + SD G Y C+V
Sbjct: 32 PDIQWVKDGAVVQNLDQL-----YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE 86
Query: 78 -------------VFLNRSPNSHK-------------NG-------TWFHLDVHGVFNDG 104
F P G W+
Sbjct: 87 ISQPVWLTVEGVPFFT-VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP 145
Query: 105 TELRISNIRSQDIGDYTCLAT 125
+ ++ ++C A
Sbjct: 146 SPSVLNVTGVTQSTMFSCEAH 166
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 33.7 bits (77), Expect = 0.005
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 17 GDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
G + + D + + R + G SL + + D G Y C+
Sbjct: 34 GFCPWSQCTNELLRTDER--NVTYQKSSRYQLKGDLNK-GDVSLIIKNVTLDDHGTYCCR 90
Query: 77 V 77
+
Sbjct: 91 I 91
Score = 26.4 bits (58), Expect = 2.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 107 LRISNIRSQDIGDYTC 122
L I N+ D G Y C
Sbjct: 74 LIIKNVTLDDHGTYCC 89
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 34.4 bits (79), Expect = 0.007
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
G L+I + D G Y C+AT
Sbjct: 160 QLRSGA-LQIESSEETDQGKYECVAT 184
Score = 33.3 bits (76), Expect = 0.019
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 91 TWFH----LDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
W L G + +D +YTC+A
Sbjct: 238 KWMQGAEDLTPEDDMPVGR-NVLELTDVKDSANYTCVAM 275
Score = 28.6 bits (64), Expect = 0.68
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 102 NDGTELRISNIRSQ-DIGDYTCLAT 125
+ G LRI +R+ D Y C+A
Sbjct: 60 SAGAVLRIQPLRTPRDENVYECVAQ 84
Score = 28.2 bits (63), Expect = 0.86
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 55 FGMASLNLTKIRESDQGWYECKVV 78
+ L D Y C +
Sbjct: 252 MPVGRNVLELTDVKDSANYTCVAM 275
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 34.0 bits (78), Expect = 0.008
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
L+I D G Y C+AT
Sbjct: 164 ESIGALQIEQSEESDQGKYECVAT 187
Score = 33.3 bits (76), Expect = 0.015
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC 75
P W+ D P + GRI ++ E + +L + + ESDQG YEC
Sbjct: 138 PEITWFKDFLPVDTSNN-NGRIKQLRSE---SIGALQIEQSEESDQGKYEC 184
Score = 31.3 bits (71), Expect = 0.072
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 102 NDGTELRISNIRS-QDIGDYTCLAT 125
G+ LRI +R+ +D Y C+A+
Sbjct: 60 GSGSVLRIQPLRTPRDEAIYECVAS 84
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 32.8 bits (75), Expect = 0.008
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 88 KNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
++G + + + D G Y C+ +
Sbjct: 44 RDGVQLVESNRTRITGEE-VEVRDSIPADSGLYACVTS 80
Score = 25.1 bits (55), Expect = 4.5
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTW-FHLDV 97
+ + +D G Y C + + T F ++V
Sbjct: 61 EVEVRDSIPADSGLYACVTS------SPSGSDTTYFSVNV 94
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 33.4 bits (76), Expect = 0.009
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 97 VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+H N + + + N+ QD G Y CL
Sbjct: 59 LHHSANQLS-ITVPNVTLQDEGVYKCLHY 86
Score = 29.6 bits (66), Expect = 0.19
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 44 GRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGT 91
+ + + S+ + + D+G Y+C S K
Sbjct: 54 SKYQLLHHSA--NQLSITVPNVTLQDEGVYKCLH---YSDSVSTKEVK 96
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 33.7 bits (77), Expect = 0.010
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 88 KNGTWF----HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
KN H ++ I+ + + D G Y +
Sbjct: 153 KNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194
Score = 31.4 bits (71), Expect = 0.068
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+ L+I+ D G Y
Sbjct: 56 GEQIWLQINEPTPNDKGKYVMELF 79
Score = 29.5 bits (66), Expect = 0.29
Identities = 7/54 (12%), Positives = 14/54 (25%), Gaps = 7/54 (12%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
P W + + + + A + + +D G Y V
Sbjct: 147 PEVSWLKNEKALAQTDHCNLK------FEAGRTAYFTINGVSTADSGKYGLVVK 194
Score = 26.0 bits (57), Expect = 4.9
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
RV L + + +D+G Y ++
Sbjct: 48 DRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 32.7 bits (75), Expect = 0.010
Identities = 10/44 (22%), Positives = 12/44 (27%), Gaps = 9/44 (20%)
Query: 91 TWFHLDV-------HGVFNDGTE--LRISNIRSQDIGDYTCLAT 125
W DG E L ++ D G Y C A
Sbjct: 46 VWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 89
Score = 27.7 bits (62), Expect = 0.73
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 8/52 (15%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
PV +W +E L LT +D G Y C+
Sbjct: 43 PVVVWEKGGQQLAASERL--SFPADG-----AEHGLLLTAALPTDAGVYVCR 87
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 33.7 bits (77), Expect = 0.011
Identities = 16/108 (14%), Positives = 26/108 (24%), Gaps = 46/108 (42%)
Query: 59 SLNLTKIRESDQGWYECKV--------VFLN--------RSPNS---------------- 86
S + +D G Y C+ V L ++P
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWK 114
Query: 87 ---------HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+NG F+ ++ I +D G Y C
Sbjct: 115 NTALHKVTYLQNGKDRKY-----FHHNSDFHIPKATLKDSGSYFCRGL 157
Score = 32.5 bits (74), Expect = 0.027
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 10/72 (13%)
Query: 83 SPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH----------VLYPDL 132
+ + N T + + + + + I D G+Y C V L
Sbjct: 32 AYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWL 91
Query: 133 LVVLGSFHIHTG 144
L+ +
Sbjct: 92 LLQAPRWVFKEE 103
Score = 26.0 bits (57), Expect = 4.9
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 58 ASLNLTKIRESDQGWYECKVVFLNRSPNS 86
+ ++ K D G Y C+ + +++ +S
Sbjct: 137 SDFHIPKATLKDSGSYFCRGLVGSKNVSS 165
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 32.6 bits (74), Expect = 0.012
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVH 98
Y RI + +L ++ +R D G Y+ + + K ++L ++
Sbjct: 59 RNYYERIH-ALGPN----YNLVISDLRMEDAGDYKADINTQADPYTTTKR---YNLQIY 109
Score = 29.1 bits (65), Expect = 0.21
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 100 VFNDGTELRISNIRSQDIGDYTC 122
L IS++R +D GDY
Sbjct: 67 ALGPNYNLVISDLRMEDAGDYKA 89
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 33.1 bits (75), Expect = 0.014
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 94 HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
H+ + + + I + +D G Y C A+
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRAS 110
Score = 28.4 bits (63), Expect = 0.60
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 25 IPVYIWY----DSYPTHEAEEYKGRISRVDKESPF---GMASLNLTKIRESDQGWYECK 76
+P W+ R+ RV + + +++++ + E D G YEC+
Sbjct: 50 VPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECR 108
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 33.4 bits (76), Expect = 0.014
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 15/66 (22%)
Query: 61 NLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDY 120
K+ E + + F NR +G+ L I N+ S D +Y
Sbjct: 31 QKDKVAELENSEFRAFSSFKNRVYLDTVSGS---------------LTIYNLTSSDEDEY 75
Query: 121 TCLATH 126
+ +
Sbjct: 76 EMESPN 81
Score = 31.8 bits (72), Expect = 0.044
Identities = 15/144 (10%), Positives = 34/144 (23%), Gaps = 42/144 (29%)
Query: 18 DFADDEDIPVYIW---------YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRES 68
+ + +W ++ +K R+ SL + + S
Sbjct: 16 HVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS-----GSLTIYNLTSS 70
Query: 69 DQGWYECKVVFLNRSPN-------------------------SHKNGTWFHLDVH---GV 100
D+ YE + + + GT L ++
Sbjct: 71 DEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEH 130
Query: 101 FNDGTELRISNIRSQDIGDYTCLA 124
+ +S + + C A
Sbjct: 131 LRSLRQKTMSYQWTNLRAPFKCKA 154
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 33.1 bits (76), Expect = 0.015
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 91 TWFHLDV-------HGVFNDGTE--LRISNIRSQDIGDYTCLAT 125
W+ + + +DG L + +D G YTC+AT
Sbjct: 40 KWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 83
Score = 32.0 bits (73), Expect = 0.036
Identities = 23/151 (15%), Positives = 36/151 (23%), Gaps = 58/151 (38%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV------ 78
P WY ++ +YK +S +L + + D+G Y C
Sbjct: 37 PDIKWYRFGKELIQSRKYK--MSSDG-----RTHTLTVMTEEQEDEGVYTCIATNEVGEV 89
Query: 79 -----------------FLNRSPNSHKNG-----------------TWFH----LDVHGV 100
+ + G TWFH L
Sbjct: 90 ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSEN 149
Query: 101 F-----NDGTELRISNI-RSQDIGDYTCLAT 125
T L + N+ R G Y +
Sbjct: 150 ITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 32.4 bits (74), Expect = 0.015
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 11/46 (23%)
Query: 91 TWFH--------LDVHGVFNDGTE---LRISNIRSQDIGDYTCLAT 125
W D ++ D T L I ++ +D G YT A
Sbjct: 48 FWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV 93
Score = 29.7 bits (67), Expect = 0.14
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 52 ESPFGMASLNLTKIRESDQGWYECK 76
+ G +L + + + D GWY
Sbjct: 67 QDNTGRVTLLIKDVNKKDAGWYTVS 91
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 32.4 bits (74), Expect = 0.015
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 74 ECKVV---------FLNRSP--NSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
V F N + S T H+ H ++ L++ N + GDYT
Sbjct: 22 PFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH--GCLQLDNPTHMNNGDYTL 79
Query: 123 LAT 125
+A
Sbjct: 80 IAK 82
Score = 29.3 bits (66), Expect = 0.21
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
P W+ + +E++ +I + G L L + G Y
Sbjct: 31 PALQWFYNGAILNESKYICTKIHVTNHTEYHG--CLQLDNPTHMNNGDYTLIA 81
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 32.3 bits (74), Expect = 0.015
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 16/62 (25%)
Query: 74 ECKVVFLNRSPNSHKNGTWFHLDV-------HGVFNDGT--ELRISNIRSQDIGDYTCLA 124
+C++ ++ W + + DGT EL+I ++ D G+Y+C+
Sbjct: 29 QCEL---SKVAP----VEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC 81
Query: 125 TH 126
Sbjct: 82 GQ 83
Score = 25.0 bits (55), Expect = 6.6
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 56 GMASLNLTKIRESDQGWYECKV 77
L + + +D G Y C
Sbjct: 60 TRCELQIHDLSVADAGEYSCMC 81
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 32.6 bits (74), Expect = 0.017
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHK 88
+ ++ EE + R + + +L++ R SD G Y ++ N N
Sbjct: 60 VATNNPAWAVQEETRDRF-HLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKY 118
Query: 89 NGTWFH 94
+ +
Sbjct: 119 DQLSVN 124
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 33.3 bits (75), Expect = 0.017
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ ++ E +GR + SL++ R D G Y +V
Sbjct: 54 VATNNPDRRVKPETQGRFRLLGDVQK-KNCSLSIGDARMEDTGSYFFRV 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.018
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 24/112 (21%)
Query: 8 KSIFQMLSVGDFADDEDIP----VYIWYDSYPTHEAEEY------KGRISRVDKESPFGM 57
+ +F LSV F IP IW+D + + + KES +
Sbjct: 372 RKMFDRLSV--FPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 58 ASLNLTKIRESDQ---------GWYECKVVF-LNRSPNSHKNGTWF-HLDVH 98
S+ L + + Y F + + + ++ H+ H
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Score = 27.5 bits (60), Expect = 1.8
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 34/134 (25%)
Query: 16 VGDFADDEDIPVYIW-YDSY------PTHEAEEYKGRISRVDKESPFGMASLNLTKIRES 68
V F ++ Y + P+ Y + R+ ++ A N+++++
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPY 137
Query: 69 DQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVL 128
+ L ++ + + + GV G T +A V
Sbjct: 138 LK---------LRQALLELRPAKN--VLIDGVLGSGK---------------TWVALDVC 171
Query: 129 YPDLLVVLGSFHIH 142
+ F I
Sbjct: 172 LSYKVQCKMDFKIF 185
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 31.9 bits (73), Expect = 0.018
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
G L I + D G YTC
Sbjct: 59 KGGFFLEIHKTDTSDSGLYTCTVK 82
Score = 28.4 bits (64), Expect = 0.32
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 19/79 (24%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSP 84
P IW D + +Y ++S G L + K SD G Y C V
Sbjct: 36 PTAIWTKDGKAITQGGKY--KLSEDK-----GGFFLEIHKTDTSDSGLYTCTVK------ 82
Query: 85 NSHKNGTWF---HLDVHGV 100
NS G+ L + +
Sbjct: 83 NSA--GSVSSSCKLTIKAI 99
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 32.2 bits (73), Expect = 0.020
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 27 VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
IW + + + R + S G SL + ESD G Y C+V
Sbjct: 45 TLIWTNGH--RVTYQKSSRYNLKGHISE-GDVSLTIENSVESDSGLYCCRV 92
Score = 26.0 bits (57), Expect = 2.9
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 107 LRISNIRSQDIGDYTC 122
L I N D G Y C
Sbjct: 75 LTIENSVESDSGLYCC 90
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 31.9 bits (73), Expect = 0.020
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 63 TKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV-------HGVFNDGT--ELRISNIR 113
+ E C++ S + W+ H + DG EL+I +
Sbjct: 29 EEATEGATAVLRCEL-----SKMAP--VEWWKGHETLRDGDRHSLRQDGARCELQIRGLV 81
Query: 114 SQDIGDYTCLA 124
++D G+Y C+
Sbjct: 82 AEDAGEYLCMC 92
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 32.2 bits (73), Expect = 0.020
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 84 PNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ T F LR++ + G+YT LA
Sbjct: 42 NETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
Score = 28.8 bits (64), Expect = 0.41
Identities = 7/53 (13%), Positives = 11/53 (20%), Gaps = 1/53 (1%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
P W + +E L L + + G Y
Sbjct: 30 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA 82
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 32.1 bits (73), Expect = 0.021
Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 19 FADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
++ I + Y+S T E+KGR+ +++ + +L+++ +R+ D+G Y +V+
Sbjct: 40 HTKNQKI-LEYNYNSTKTIFESEFKGRVY-LEENN----GALHISNVRKEDKGTYYMRVL 93
Query: 79 FLNRSPNSHKNGTWFHLDVH 98
+N L+V
Sbjct: 94 ------RETENELKITLEVF 107
Score = 28.3 bits (63), Expect = 0.43
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 107 LRISNIRSQDIGDYTC 122
L ISN+R +D G Y
Sbjct: 75 LHISNVRKEDKGTYYM 90
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 33.1 bits (75), Expect = 0.022
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
D+++ V+ ++ + E ++ G ASL L I+ + G Y C+V
Sbjct: 49 FDKEVKVFEFFGDHQ----EAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEV 101
Score = 29.3 bits (65), Expect = 0.37
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 107 LRISNIRSQDIGDYTCLATHVLY 129
LR+ I+ ++ G+Y C
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPL 106
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 32.7 bits (74), Expect = 0.023
Identities = 14/118 (11%), Positives = 25/118 (21%), Gaps = 52/118 (44%)
Query: 59 SLNLTKIRESDQGWYECKV-------------------VFLNRSPNSH-KNG-------- 90
L +T S G Y C++ S S +
Sbjct: 68 FLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCT 127
Query: 91 ---------TWFHLD------VHG-----VFNDGTELRIS---NIRSQDIGDYTCLAT 125
W + DG+ L ++ ++ TC+
Sbjct: 128 VNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGS-LSVAVDLSLPKPWHLPVTCVGK 184
Score = 31.9 bits (72), Expect = 0.039
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 95 LDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
D+H N L ++ G+Y C
Sbjct: 58 FDIHRSANTFF-LVVTAANISHDGNYLCRMK 87
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 32.8 bits (74), Expect = 0.025
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 98 HGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ + L I + D G YTC A+
Sbjct: 164 SEMKKFLSTLTIDGVTRSDQGLYTCAAS 191
Score = 31.3 bits (70), Expect = 0.077
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 10/85 (11%)
Query: 50 DKESPF------GMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHG---V 100
D SPF + +T ++ C N + + G
Sbjct: 1 DYRSPFIASVSDQHGVVYIT-ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS 59
Query: 101 FNDGTELRISNIRSQDIGDYTCLAT 125
++ I + G C A
Sbjct: 60 WDSKKGFTIPSYMISYAGMVFCEAK 84
Score = 27.1 bits (59), Expect = 2.1
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 26 PVYIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ W H+ ++ R ++ E +++L + + SDQG Y C
Sbjct: 137 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 190
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 31.8 bits (72), Expect = 0.026
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 17 GDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
G + + + D + + + K G SL ++ D G Y C+
Sbjct: 35 GSCPNSKCNAELLRTDGT--RIISRKSTKYTLLGKVQF-GEVSLTISNTNRGDSGVYCCR 91
Query: 77 V 77
+
Sbjct: 92 I 92
Score = 24.5 bits (53), Expect = 9.3
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 107 LRISNIRSQDIGDYTC 122
L ISN D G Y C
Sbjct: 75 LTISNTNRGDSGVYCC 90
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 32.8 bits (75), Expect = 0.027
Identities = 21/153 (13%), Positives = 34/153 (22%), Gaps = 58/153 (37%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV------ 78
P+ WY A+ K RI E G L + + + D Y+ +
Sbjct: 34 PIVKWYRQGKEII-ADGLKYRIQ----EFKGGYHQLIIASVTDDDATVYQVRATNQGGSV 88
Query: 79 ------------------FLNRSPNSH------------------------KNGTWF--- 93
L H K
Sbjct: 89 SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 148
Query: 94 -HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
H V + + + + + +D G Y A
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 31.7 bits (71), Expect = 0.028
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 26 PVYIWYDSYPTHEAEEYKGRIS---RVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
P W+ + R S + S L++ K+ D+G+Y +V
Sbjct: 45 PTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEV----- 99
Query: 83 SPNSHKNGTWFHLDVHG 99
+ F++DV
Sbjct: 100 KAKDTCDSCGFNIDVEA 116
Score = 26.7 bits (58), Expect = 1.7
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 7/45 (15%)
Query: 86 SHKNGTWFHLDVHGVFNDGT-----ELRISNIRSQDIGDYTCLAT 125
K+G N + EL I + D G Y
Sbjct: 58 GSKSGA--RFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVK 100
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 31.6 bits (72), Expect = 0.029
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 63 TKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV-------HGVFNDGT--ELRISNIR 113
++ ++Q ++C+V G W+ V + + G +L I ++R
Sbjct: 18 LTVKAAEQAVFKCEV----SDEKV--TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVR 71
Query: 114 SQDIGDYTCLAT 125
+D GDYT +
Sbjct: 72 PEDEGDYTFVPD 83
Score = 25.0 bits (55), Expect = 6.4
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 22 DEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
DE + WY + ++ IS V + L + +R D+G Y
Sbjct: 34 DEKVTG-KWYKNGVEVRPSKRIT--ISHVGR-----FHKLVIDDVRPEDEGDYTFVP 82
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 32.4 bits (74), Expect = 0.029
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+L I+++ D Y AT
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRAT 82
Score = 30.1 bits (68), Expect = 0.20
Identities = 19/153 (12%), Positives = 31/153 (20%), Gaps = 58/153 (37%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
P+ WY K RI E G L + + + D Y+ +
Sbjct: 34 PIVKWYRQGKEIIADGL-KYRIQ----EFKGGYHQLIIASVTDDDATVYQVRATNQGGSV 88
Query: 78 -----------------VFLNRSPNS------------------------HKNGTWFHLD 96
L K +
Sbjct: 89 SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 148
Query: 97 VH-GVFNDGTE---LRISNIRSQDIGDYTCLAT 125
H V + + + + +D G Y A
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 31.6 bits (72), Expect = 0.030
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
NGT D E + +D G Y C
Sbjct: 38 WLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 31.1 bits (71), Expect = 0.030
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 9/44 (20%)
Query: 91 TWFHLDV-------HGVFNDG--TELRISNIRSQDIGDYTCLAT 125
TW D V T + + + D G+Y
Sbjct: 35 TWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK 78
Score = 26.1 bits (58), Expect = 2.1
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ ++ S+ + +D G Y+ KV
Sbjct: 47 PELLVDAKSSTTSIFFPSAKRADSGNYKLKV 77
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 32.1 bits (72), Expect = 0.031
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 24/112 (21%)
Query: 32 DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGT 91
DS ++ K + + + T + +C+V + +
Sbjct: 18 DSPDLGTDDDDKAMADINLSQDDSQPWTSDET-VVAGGTVVLKCQV-----KDHEDSSLQ 71
Query: 92 WFHLDVHGVFNDGTE------------------LRISNIRSQDIGDYTCLAT 125
W + ++ + ISN+ D G+YTC
Sbjct: 72 WSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIF 123
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 31.5 bits (72), Expect = 0.033
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+G++L I R + G YT L
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVE 83
Score = 28.1 bits (63), Expect = 0.60
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ E+ + L + R+ G Y V
Sbjct: 52 EHMKVENSENGSKLTILAARQEHCGCYTLLV 82
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 31.1 bits (71), Expect = 0.033
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
LRI D G YTC A
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAV 82
Score = 29.9 bits (68), Expect = 0.11
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
PV W + + R +E+ G+ L + D G+Y CK V
Sbjct: 35 PVVSWL-----RNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV 82
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 31.2 bits (71), Expect = 0.034
Identities = 8/71 (11%), Positives = 17/71 (23%), Gaps = 13/71 (18%)
Query: 63 TKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV-------HGVFNDGT--ELRISNIR 113
++ E + +EC + ++ W G L +
Sbjct: 18 MEVLEGESCSFECVLS----HESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAA 73
Query: 114 SQDIGDYTCLA 124
D G+
Sbjct: 74 PSDAGEVVFSV 84
Score = 25.4 bits (56), Expect = 3.8
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 56 GMASLNLTKIRESDQGWYECKV 77
L + + SD G V
Sbjct: 63 RKYILVVREAAPSDAGEVVFSV 84
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.5 bits (71), Expect = 0.036
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV 97
+ R + D G ++ +T +RE D G Y C++ S NS F+L V
Sbjct: 65 RTMAWTSRFTIWDDPD-AGFFTVTMTDLREEDSGHYWCRI--YRPSDNSVSKSVRFYLVV 121
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 32.4 bits (73), Expect = 0.036
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 107 LRISNIRSQDIGDYTCLAT 125
L IS+ R D G + C A
Sbjct: 254 LTISSARVDDSGVFMCYAN 272
Score = 32.0 bits (72), Expect = 0.052
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 7/81 (8%)
Query: 20 ADDEDIPVYI-W-YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
D V W + + K + +L ++ R D G + C
Sbjct: 212 IKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYA 271
Query: 78 VFLNRSPNSHKNGTWFHLDVH 98
+ N T L V
Sbjct: 272 ----NNTFGSANVT-TTLKVV 287
Score = 29.7 bits (66), Expect = 0.30
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 91 TWFHLDVHGVF--NDGTELRISNIRSQDIGDYTCLATH 126
W N E + G YTC ++
Sbjct: 41 RWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN 78
Score = 28.5 bits (63), Expect = 0.64
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNI-RSQDIGDYTCLAT 125
+G D+ V N + I N+ R+ C A
Sbjct: 127 ECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQ 166
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 31.1 bits (71), Expect = 0.037
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 9/44 (20%)
Query: 91 TWFH--------LDVHGVFNDGT-ELRISNIRSQDIGDYTCLAT 125
TW+ + DG L + +I D G Y C
Sbjct: 35 TWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVV 78
Score = 30.4 bits (69), Expect = 0.074
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 29 IWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
WY +E+Y I+ D G+A L + I + D G Y CKVV
Sbjct: 35 TWYFGVRQLENSEKY--EITYED-----GVAILYVKDITKLDDGTYRCKVV 78
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 31.1 bits (71), Expect = 0.039
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 63 TKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV-------HGVFNDGT--ELRISNIR 113
++ E C + + W + + + + +G EL + N+R
Sbjct: 18 LEVLEGGAATLRCVL---SSVA---APVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLR 71
Query: 114 SQDIGDYTCLA 124
QD G Y+C
Sbjct: 72 PQDSGRYSCSF 82
Score = 26.5 bits (59), Expect = 1.8
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 22 DEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
PV W + ++Y + + M L + +R D G Y C
Sbjct: 34 SVAAPV-KWCYGNNVLRPGDKY--SLRQEG-----AMLELVVRNLRPQDSGRYSCSF 82
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 31.2 bits (71), Expect = 0.044
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 15/61 (24%)
Query: 74 ECKVVFLNRSPNSHKNGTWFH--------LDVHGVFNDGTE--LRISNIRSQDIGDYTCL 123
C++ SP +++ WF G L + + +D G
Sbjct: 34 RCRI-----SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE 88
Query: 124 A 124
A
Sbjct: 89 A 89
Score = 28.5 bits (64), Expect = 0.47
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 7/56 (12%)
Query: 23 EDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ W+ D P H E I G L L ++ D G +
Sbjct: 40 ANYEPVHWFLDKTPLHANELN--EIDAQPG----GYHVLTLRQLALKDSGTIYFEA 89
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 30.7 bits (70), Expect = 0.044
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 19/65 (29%)
Query: 74 ECKVVFLNRSPNSHKN--GTWFHLDV-------HGVFNDGT--ELRISNIRSQDIGDYTC 122
E ++ S + G W + DG L + N + G+ +
Sbjct: 26 EIEL--------SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSF 77
Query: 123 LATHV 127
A +
Sbjct: 78 QAANT 82
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 31.1 bits (71), Expect = 0.046
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 91 TWFH--------LDVHGVFNDGT--ELRISNIRSQDIGDYTCLAT 125
W+ ++ + + EL I ++ +D A
Sbjct: 38 EWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI 82
Score = 27.2 bits (61), Expect = 0.82
Identities = 3/27 (11%), Positives = 7/27 (25%)
Query: 52 ESPFGMASLNLTKIRESDQGWYECKVV 78
+ L + + D K +
Sbjct: 56 WPEDNVCELVIRDVTGEDSASIMVKAI 82
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 31.1 bits (71), Expect = 0.047
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 15/64 (23%)
Query: 74 ECKVVFLNRSPNSHKNGTWFHLDV-------HGVFNDGT--ELRISNIRSQDIGDYTCLA 124
C++ +R+ W + V +GT L I +D G+YTC
Sbjct: 29 RCEL---SRAG---TPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEV 82
Query: 125 THVL 128
Sbjct: 83 EASK 86
Score = 25.0 bits (55), Expect = 5.9
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 20 ADDEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
PV W D ++++Y + MA L + D G Y C+V
Sbjct: 32 LSRAGTPV-HWLKDRKAIRKSQKY--DVVCEG-----TMAMLVIRGASLKDAGEYTCEV 82
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 31.2 bits (70), Expect = 0.048
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+ L I + D G YTC A+
Sbjct: 71 KFLSTLTIDGVTRSDQGLYTCAAS 94
Score = 28.2 bits (62), Expect = 0.61
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 26 PVYIWYDSYP----THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ YP H+ + ++ E +++L + + SDQG Y C
Sbjct: 38 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 93
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 30.8 bits (70), Expect = 0.048
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 15/71 (21%)
Query: 63 TKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV-------HGVFNDGT--ELRISNIR 113
++ E + CK P + TW + H +G L IS +
Sbjct: 18 LQVEEKGTAVFTCKT----EHPAA--TVTWRKGLLELRASGKHQPSQEGLTLRLTISALE 71
Query: 114 SQDIGDYTCLA 124
D YTC
Sbjct: 72 KADSDTYTCDI 82
Score = 24.6 bits (54), Expect = 7.6
Identities = 6/53 (11%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
W + ++ + S+ L ++ + ++D Y C +
Sbjct: 37 ATVTWRKGLLELRASGKH--QPSQEG-----LTLRLTISALEKADSDTYTCDI 82
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 31.0 bits (70), Expect = 0.052
Identities = 4/30 (13%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 99 GVFNDGTE--LRISNIRSQDIGDYTCLATH 126
+ + + L ++ ++ G Y C
Sbjct: 77 AMRDTNNKYVLTLNKFSKENEGYYFCSVIS 106
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 31.7 bits (72), Expect = 0.052
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 103 DGTELRISNIRSQDIGDYTCLAT 125
+ L ++ D G+Y C A
Sbjct: 74 SASYLEVTPDSENDFGNYNCTAV 96
Score = 27.9 bits (62), Expect = 1.0
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKV 77
S + + + L +T E+D G Y C
Sbjct: 65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 30.7 bits (70), Expect = 0.054
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 91 TWFH--------LDVHGVFNDGT-ELRISNIRSQDIGDYTCLAT 125
W+H +H G L I + + D G Y + T
Sbjct: 41 KWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT 84
Score = 29.2 bits (66), Expect = 0.20
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 8/54 (14%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
WY + E+ + + G+ +L + D G Y
Sbjct: 38 AEVKWYHNGVELQESSKI--HYTNTS-----GVLTLEILDCHTDDSGTYRAVCT 84
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 31.0 bits (70), Expect = 0.056
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ E E + R+S D + ++ + + ++D Y C +
Sbjct: 50 VKTSGS---EQEVKRDRVSIKDNQK-NRTFTVTMEDLMKTDADTYWCGI 94
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 30.8 bits (70), Expect = 0.057
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 11/46 (23%)
Query: 91 TWFH--------LDVHGVFNDGT---ELRISNIRSQDIGDYTCLAT 125
WF D + + D L + D G+YT +A
Sbjct: 41 YWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA 86
Score = 30.0 bits (68), Expect = 0.11
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
P W+ D ++ + G SL+ T D G Y
Sbjct: 38 PKIYWFKDGKQISPKSDH-----YTIQRDLDGTCSLHTTASTLDDDGNYTIMAA 86
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 31.7 bits (71), Expect = 0.059
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 91 TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+W + V + ++ I + G YT
Sbjct: 133 SWSKGED--VIDTTQDITIQEFTADKNGVYTVKVW 165
Score = 31.0 bits (69), Expect = 0.10
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 91 TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
TW D N+ L +++ S++ G Y
Sbjct: 39 TWTK-DDQPHENNTATLTVADATSENAGSYKVTVQ 72
Score = 28.6 bits (63), Expect = 0.64
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 83 SPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVV 135
SP + L+ + DG L + D + C+A + V
Sbjct: 237 SPTLIGSEVGEALEGFSITPDG-HLFKESATYDDTAKFWCVAKLYQQIEDETV 288
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 30.9 bits (70), Expect = 0.063
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 32 DSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ + GR + + + ++ D G Y+C +
Sbjct: 51 ERPSKNSHPVQVGRIILEDYHDHGLL---RVRMVNLQVEDSGLYQCVI 95
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 31.6 bits (71), Expect = 0.064
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 81 NRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
S + T F LD+ + L I + +D G YTC T
Sbjct: 220 KESGRLVEPVTDFLLDMPYHIR--SILHIPSAELEDSGTYTCNVT 262
Score = 30.1 bits (67), Expect = 0.26
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+ L ++N+ D G+Y C
Sbjct: 48 TFSSVLTLTNLTGLDTGEYFCTHN 71
Score = 29.7 bits (66), Expect = 0.32
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMAS-LNLTKIRESDQGWYECKV 77
+ W YP E+ ++ + P+ + S L++ D G Y C V
Sbjct: 211 VNFEWT--YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNV 261
Score = 29.3 bits (65), Expect = 0.42
Identities = 13/110 (11%), Positives = 17/110 (15%), Gaps = 43/110 (39%)
Query: 59 SLNLTKIRESDQGWYECKV-----------------------VFLNRSPNSH----KNG- 90
L LT + D G Y C FL
Sbjct: 52 VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111
Query: 91 ---------------TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
T + + + Y C T
Sbjct: 112 EITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTT 161
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 30.7 bits (69), Expect = 0.066
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 23/88 (26%)
Query: 30 WYDSYPTH------EAEEYKGRISRVDKE--SPFGMASLNLTKIRESDQGWYECKVVFLN 81
W+ E++GR++ + A L++ +R D Y C+V L
Sbjct: 45 WFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLG 104
Query: 82 RSPNSHKNGTWFHLDVHGVFNDGTELRI 109
+GT L +
Sbjct: 105 LGV---------------GTGNGTRLVV 117
Score = 28.8 bits (64), Expect = 0.38
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 72 WYECKV----VFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
W+ +V N +P + L I ++R D Y C
Sbjct: 45 WFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAE-LHIRDVRGHDASIYVC 98
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 30.6 bits (69), Expect = 0.067
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 29 IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
I S + + +Y GR + + G +N+ ++ + D G Y+C +
Sbjct: 47 ITLISSEGYVSSKYAGRANLTNF-PENGTFVVNIAQLSQDDSGRYKCGL 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.072
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 47/116 (40%)
Query: 1 M-M----NSFAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESP- 54
M M S A + ++ + AD+ H + Y I + +P
Sbjct: 1631 MGMDLYKTSKAAQDVW------NRADN--------------HFKDTYGFSILDIVINNPV 1670
Query: 55 -----FGMASLNLTKIRE---------SDQGWYECKVVF--LNRSPNSHKNGTWFH 94
FG +IRE G + + +F +N S+ T+
Sbjct: 1671 NLTIHFGGEKGK--RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY---TFRS 1721
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 30.5 bits (69), Expect = 0.075
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 29 IWYDSYPTHEAEEYKGRIS-RVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSH 87
+ D+ E K R+S R ++ + ++ + +R SD G Y C + +
Sbjct: 49 VETDAS---EQLVKKNRVSIRDNQRD--FIFTVTMEDLRMSDAGIYWCGI-----TKGGL 98
Query: 88 KNGTWFHLDV 97
+++
Sbjct: 99 DPMFKVTVNI 108
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 30.6 bits (69), Expect = 0.077
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 107 LRISNIRSQDIGDYTCLAT 125
L + + G+YT +A
Sbjct: 67 LLFNKPTHYNNGNYTLIAK 85
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform
CRA_B; HERG, PAS domain, voltage-gated potassium
channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Length = 138
Score = 30.7 bits (70), Expect = 0.077
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGT--WFHLDVHGVFND 103
+I ++ G E KV K+G+ +DV V N+
Sbjct: 82 AAQIAQALLGAEERKVEIAFY----RKDGSCFLCLVDVVPVKNE 121
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 30.4 bits (69), Expect = 0.078
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 100 VFNDGT--ELRISNIRSQDIGDYTCLAT 125
+ +G L I D +Y+ + T
Sbjct: 57 IRVEGKKHILIIEGATKADAAEYSVMTT 84
Score = 25.4 bits (56), Expect = 4.9
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 22 DEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
ED W+ + + + RI K L + ++D Y
Sbjct: 32 SEDDANVKWFKNGEEIIPGPKSRYRIRVEGK-----KHILIIEGATKADAAEYSVMT 83
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 30.4 bits (69), Expect = 0.080
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 10/45 (22%)
Query: 91 TWFH--------LDVHGVFNDGT--ELRISNIRSQDIGDYTCLAT 125
W + + G L IS D Y C+
Sbjct: 48 KWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG 92
Score = 27.3 bits (61), Expect = 0.91
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKV 77
S+ ES +L +++ +D Y+C V
Sbjct: 61 SKYIFESIGAKRTLTISQCSLADDAAYQCVV 91
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 30.4 bits (68), Expect = 0.082
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 83 SPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVL 128
+N + T LR+ N+ G Y C+ ++
Sbjct: 54 QDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHF 99
Score = 28.9 bits (64), Expect = 0.33
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 28 YIWY-DSYPTHEAE-EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
+ W D+ +AE E + E L L + + +G Y+C + S
Sbjct: 44 FAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103
Query: 86 SHKNGTWFHLDVH 98
S L ++
Sbjct: 104 SV----XAXLTIN 112
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 31.1 bits (71), Expect = 0.086
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
I YD E+ G+ + R+ + S ++L + + + D Y C
Sbjct: 51 SISYDGTVRKESGIPSGKFEVDRIPETS---TSTLTIHNVEKQDIATYYC-----ALWEA 102
Query: 86 SHKNGTWFHLDVHGVFNDGTELRIS 110
+ G VF GT+L I+
Sbjct: 103 QQELGKKIK-----VFGPGTKLIIT 122
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 30.6 bits (69), Expect = 0.089
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 107 LRISNIRSQDIGDYTCLAT 125
L IS + D YTC A
Sbjct: 100 LTISEVCGDDDAKYTCKAV 118
Score = 30.6 bits (69), Expect = 0.12
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
P +W+ D P E+ + +I G SL ++++ D Y CK V
Sbjct: 71 PEVMWFKDDNPVKESRHF--QID----YDEEGNCSLTISEVCGDDDAKYTCKAV 118
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 30.0 bits (68), Expect = 0.091
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 16/72 (22%)
Query: 63 TKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV-------HGVFNDGT--ELRISNIR 113
+ + +C++ S N G W + V G +L I+N
Sbjct: 17 QTVNLGKEICLKCEI-----SENIP--GKWTKNGLPVQESDRLKVVQKGRIHKLVIANAL 69
Query: 114 SQDIGDYTCLAT 125
++D GDY
Sbjct: 70 TEDEGDYVFAPD 81
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein,
flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB:
4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Length = 115
Score = 30.2 bits (69), Expect = 0.094
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGT--WFHLDVHGVFNDGTELR 108
+ KIR++ + E V +N K+G W L + V + EL+
Sbjct: 58 VQKIRDAIRDQRETTVQLINY----TKSGKKFWNLLHLQPVRDQKGELQ 102
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 30.4 bits (69), Expect = 0.095
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 91 TWFH----LD---VHGVFNDG-TELRISNIRSQDIGDYTCLAT 125
W LD VH +D T + D G+Y
Sbjct: 57 VWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99
Score = 27.4 bits (61), Expect = 1.0
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 47 SRVDKESPFGMASLNLTKIRESDQGWYECKV 77
SRV + + + SD G YE V
Sbjct: 68 SRVHVRTSDFDTVFFVRQAARSDSGEYELSV 98
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 31.2 bits (70), Expect = 0.098
Identities = 19/138 (13%), Positives = 30/138 (21%), Gaps = 53/138 (38%)
Query: 45 RISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHG----- 99
++ V + A L L E + + C HKN T L V
Sbjct: 129 TLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT-RELRVLYGPRLD 187
Query: 100 --------VFNDGTEL---------------------------RISNIRSQDIGDYTCLA 124
+ + ++ + G Y C A
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRA 247
Query: 125 T------------HVLYP 130
+VL P
Sbjct: 248 RSTQGEVTREVTVNVLSP 265
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.10
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Query: 30 WYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE 74
W EE + R+ +D S ++ ++ W +
Sbjct: 90 W--------REEQRKRLQELDAASKVMEQEWREKAKKDLEE-WNQ 125
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 30.5 bits (68), Expect = 0.11
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 103 DGTELRISNIRSQDIGDYTCLAT 125
D + + +D G YT
Sbjct: 101 DRSIFTVEGAEKEDEGVYTVTVK 123
Score = 26.6 bits (58), Expect = 2.2
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 48 RVDKESPFGMASLNLTKIRESDQGWYECKV 77
RV E+ + + + D+G Y V
Sbjct: 93 RVRVETTKDRSIFTVEGAEKEDEGVYTVTV 122
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 31.0 bits (69), Expect = 0.12
Identities = 19/138 (13%), Positives = 30/138 (21%), Gaps = 53/138 (38%)
Query: 45 RISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHG----- 99
++ V + A L L E + + C HKN T L V
Sbjct: 314 TLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT-RELRVLYGPRLD 372
Query: 100 --------VFNDGTELRIS---------------------------NIRSQDIGDYTCLA 124
+ + ++ + G Y C A
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRA 432
Query: 125 T------------HVLYP 130
+VL P
Sbjct: 433 RSTQGEVTREVTVNVLSP 450
Score = 29.1 bits (64), Expect = 0.58
Identities = 4/45 (8%), Positives = 10/45 (22%)
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPD 131
+ + + R +++C L P
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding,
serine/threonine-protein kinase, light-induced signal
trans phototropin1, nucleotide-binding; HET: FMN; 1.40A
{Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A*
1g28_A*
Length = 146
Score = 30.3 bits (69), Expect = 0.12
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGT--WFHLDVHGVFNDGTELR 108
+ KIR++ E V +N K+G W + + + +++
Sbjct: 63 VRKIRDAIDNQTEVTVQLINY----TKSGKKFWNLFHLQPMRDQKGDVQ 107
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 29.8 bits (67), Expect = 0.13
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV 97
+ GR + + + G+ + + ++E D G Y C V H+ L++
Sbjct: 49 DRRAPAGRRTFLT-DLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHR----VSLNI 103
Score = 29.1 bits (65), Expect = 0.24
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLD--VHGVFNDGTELRISNIRSQDIGDYTCLATHVLY 129
C+ + + G L G+ + + ++ +D G+Y C+
Sbjct: 37 PEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQ----VEMVTLQEEDAGEYGCMVDGARG 92
Query: 130 PDLLV 134
P +L
Sbjct: 93 PQILH 97
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 29.6 bits (67), Expect = 0.13
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 9/43 (20%)
Query: 91 TWFHLDV-------HGVFNDGT--ELRISNIRSQDIGDYTCLA 124
W +G+ +GT L + + D G Y +A
Sbjct: 40 RWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA 82
Score = 25.4 bits (56), Expect = 4.6
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 59 SLNLTKIRESDQGWYECKV 77
+L + ++ +DQG Y
Sbjct: 64 TLTVREVGPADQGSYAVIA 82
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing,
ATP-binding, chromophore, flavoprotein, FMN, kinase,
membrane, nucleotide-binding; HET: FMN; 2.00A
{Arabidopsis thaliana} PDB: 2z6c_A*
Length = 130
Score = 30.2 bits (69), Expect = 0.13
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGT--WFHLDVHGVFNDGTELR 108
+ KIR+ + LN K+GT W L V + +D
Sbjct: 67 VAKIRDCVKNGKSYCGRLLNY----KKDGTPFWNLLTVTPIKDDQGNTI 111
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin,
electron transport; HET: FMN; 1.90A {Chlamydomonas
reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Length = 109
Score = 29.8 bits (68), Expect = 0.14
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGT--WFHLDVHGVFNDGTELR 108
+ KIR++ + C V LN K+GT W L V + +
Sbjct: 54 VQKIRDAIKKGEACSVRLLNY----RKDGTPFWNLLTVTPIKTPDGRVS 98
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 29.8 bits (67), Expect = 0.15
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHG 99
S++++ + SD+G Y C + P +L V G
Sbjct: 72 SISVSDVSLSDEGQYTCSL---FTMPVKTSKA---YLTVLG 106
Score = 28.7 bits (64), Expect = 0.29
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 107 LRISNIRSQDIGDYTC 122
+ +S++ D G YTC
Sbjct: 73 ISVSDVSLSDEGQYTC 88
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 29.2 bits (66), Expect = 0.20
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 100 VFNDGTE--LRISNIRSQDIGDYTCLAT 125
DG L S++ +D G Y +
Sbjct: 60 FKKDGKRHILIFSDVVQEDRGRYQVITN 87
Score = 28.1 bits (63), Expect = 0.43
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+W + + +K R R K+ L + + + D+G Y+
Sbjct: 37 AQVMWMKNGVELTREDSFKARY-RFKKDG--KRHILIFSDVVQEDRGRYQVIT 86
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 30.2 bits (68), Expect = 0.22
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 33 SYPTHEAEEYKGRISRVDKESPFGMASLNL--TKIRESDQGWYECKVVFLNRSPNSHKNG 90
S H +EY R + D+ + T++ E + C+V +S
Sbjct: 460 SLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRV-----IASSPPVV 514
Query: 91 TWFHLDV-------HGVFNDGT--ELRISNIRSQDIGDYTCLAT 125
TW D + +G L I+ ++ D G+YT A
Sbjct: 515 TWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 558
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 29.9 bits (67), Expect = 0.24
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYPD 131
+ ISNI D G Y C+ PD
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPD 100
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 29.9 bits (66), Expect = 0.27
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 87 HKNGTWFHLDVHG--VFNDGTELRISNI-RSQDIGDYTCLAT 125
N D + +D L + + G Y C
Sbjct: 146 QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Score = 27.2 bits (59), Expect = 2.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 58 ASLNLTKIRESDQGWYECKV 77
NL + +G Y+CK
Sbjct: 49 KKWNLGSNAKDPRGMYQCKG 68
Score = 26.8 bits (58), Expect = 2.4
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 91 TWFHLD--VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
TWF + + D + + + G Y C +
Sbjct: 33 TWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGS 69
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium
channel domain, membrane protein; 2.60A {Homo sapiens}
SCOP: d.110.3.6
Length = 110
Score = 29.0 bits (66), Expect = 0.27
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGT--WFHLDVHGVFND 103
+I ++ G E KV K+G+ +DV V N+
Sbjct: 54 AAQIAQALLGAEERKVEIAFY----RKDGSCFLCLVDVVPVKNE 93
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV,
signaling protein; HET: FAD; 1.65A {Neurospora crassa}
PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A*
3hji_A* 3rh8_B*
Length = 149
Score = 29.2 bits (66), Expect = 0.29
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGTWF--HLDVHGVFNDGTELR 108
+ +R++ E +V +N KNG F L + V ++ E R
Sbjct: 97 INTMRKAIDRNAEVQVEVVNF----KKNGQRFVNFLTMIPVRDETGEYR 141
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 29.0 bits (65), Expect = 0.30
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 32 DSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ + GR + + + ++ D G Y+C +
Sbjct: 56 ERPSKNSHPVQVGRIILEDYHDHGLL---RVRMVNLQVEDSGLYQCVI 100
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.7 bits (64), Expect = 0.32
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 105 TELRISNIRSQDIGD-YTCLAT 125
+ L ISNI D Y C A
Sbjct: 76 STLTISNIVRADFQTIYNCTAW 97
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 28.1 bits (63), Expect = 0.42
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 15/60 (25%)
Query: 74 ECKVVFLNRSPNSHKNGTWFHLDV-------HGVFNDGT--ELRISNIRSQDIGDYTCLA 124
C+V + TW+ V G L + + G+Y+C A
Sbjct: 32 SCEV----AQAQT--EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA 85
Score = 25.1 bits (55), Expect = 5.9
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 26 PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
WY D + + R+ V L + + +++ G Y C+
Sbjct: 40 TEVTWYKDGKKLSSSSKV--RVEAVGCTR-----RLVVQQAGQAEAGEYSCEA 85
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 28.6 bits (64), Expect = 0.44
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 12/49 (24%)
Query: 88 KNGTWFHLDVHG------VFNDGTELRISNI-----RSQDIGDYTCLAT 125
K G D + G+ L I D G Y C+A
Sbjct: 45 KGGERVETDKDDPRSHRMLLPSGS-LFFLRIVHGRKSRPDEGVYVCVAR 92
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription
factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter
litoralis}
Length = 258
Score = 29.2 bits (65), Expect = 0.48
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGT--WFHLDVHGVFNDGTELR 108
KIR+ + V LN K+GT + V +++D EL
Sbjct: 124 TDKIRQGVREHKPVLVEILNY----KKDGTPFRNAVLVAPIYDDDDELL 168
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 28.1 bits (63), Expect = 0.53
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 107 LRISNIRSQDIGDYTCLA 124
L I+N + D +Y A
Sbjct: 65 LFINNCQMTDDSEYYVTA 82
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 29.1 bits (65), Expect = 0.57
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
YI T+ + KGR ISR + ++ L +++++ D Y C
Sbjct: 50 YISNGGGSTYYPDTVKGRFTISRDNAKN---TLYLQMSRLKSEDTAMYYC 96
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor,
signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB:
3ulf_A*
Length = 166
Score = 28.4 bits (64), Expect = 0.57
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGTWF--HLDVHGVFNDGTELR 108
+ KIR + + V LN ++GT F V G+ + +
Sbjct: 96 VDKIRNAITKGVDTSVCLLNY----RQDGTTFWNLFFVAGLRDSKGNIV 140
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 28.7 bits (63), Expect = 0.66
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 100 VFNDGTELRISNIRSQDIGDYTC 122
G L + +++ D G+Y+C
Sbjct: 55 WAGMGRRLLLRSVQLHDSGNYSC 77
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 27.7 bits (62), Expect = 0.73
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 102 NDGT--ELRISNIRSQDIGDYTCLA 124
DG L + + QD G++ C
Sbjct: 60 MDGRKHRLILPEAKVQDSGEFECRT 84
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 28.5 bits (64), Expect = 0.75
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 107 LRISNIRSQDIGDYTCLATH 126
L ++ + + Y+C TH
Sbjct: 201 LSLTPEQWKSHRSYSCQVTH 220
Score = 27.0 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 102 NDGTELRISNIRSQDIGDYTCLATH 126
+ L IS +RS+D DY C
Sbjct: 89 TSAS-LAISGLRSEDEADYYCATWD 112
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light
photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A
{Brucella melitensis}
Length = 128
Score = 27.9 bits (63), Expect = 0.78
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 19/62 (30%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVH---------------GVFNDGTE 106
+ I+ + + +N K+G F +H D T
Sbjct: 58 VRAIKSAIAAEKPIDIDIINY----KKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTL 113
Query: 107 LR 108
Sbjct: 114 EL 115
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling
protein; HET: FMN; 2.63A {Pseudomonas putida}
Length = 162
Score = 28.0 bits (63), Expect = 0.81
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 19/62 (30%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVH---------------GVFNDGTE 106
+IR++ C+ V N K+G+ F ++ G+ D +
Sbjct: 86 RARIRKAMAEGRPCREVLRNY----RKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSR 141
Query: 107 LR 108
Sbjct: 142 QV 143
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region,
C region, hinge region, immunoglobulin; HET: NAG FUL
NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 28.3 bits (63), Expect = 0.85
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 27 VYIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
YI S T+ + +K + ++R + A+++L+ + D Y C
Sbjct: 48 GYINPSSVYTNYNQRFKDKATLTRDRSSN---TANIHLSSLTSDDSAVYYC 95
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 27.7 bits (62), Expect = 0.89
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 104 GTE--LRISNIRSQDIGDYTC 122
G+ L I NI+ +D G Y C
Sbjct: 74 GSVYTLTIQNIQYEDNGIYFC 94
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM,
PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus
subtilis} PDB: 2pr6_A*
Length = 132
Score = 27.5 bits (62), Expect = 0.93
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 17/60 (28%)
Query: 62 LTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVH-------------GVFNDGTELR 108
+ IR + Q V N K+GT F +++ G+ ND T+ +
Sbjct: 60 VDNIRTALQNKEPVTVQIQNY----KKDGTMFWNELNIDPMEIEDKTYFVGIQNDITKQK 115
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 27.4 bits (61), Expect = 0.94
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 106 ELRISNIRSQDIGDYTCLA 124
L + ++ +D G+Y C
Sbjct: 69 RLVLPAVQLEDSGEYLCEI 87
Score = 25.1 bits (55), Expect = 7.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 56 GMASLNLTKIRESDQGWYECKV 77
+ L L ++ D G Y C++
Sbjct: 66 TVRRLVLPAVQLEDSGEYLCEI 87
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 27.5 bits (61), Expect = 0.94
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 36 THEAEEYKGRIS-RVDKESPFGMASLNLTKIRESDQGWYECKV 77
A + GR+S R + ++ L + E D G Y C V
Sbjct: 47 KGSAGKRNGRVSIRDSPAN--LSFTVTLENLTEEDAGTYWCGV 87
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 28.4 bits (62), Expect = 0.95
Identities = 5/57 (8%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 27 VYIWYDSYPTHEAEEYKGRISRVDKESPF------GMASLNLTKIRESDQGWYECKV 77
+ +G ++ + G + L +++ +G Y +
Sbjct: 217 LLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATI 273
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.0 bits (62), Expect = 1.1
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 4/48 (8%)
Query: 87 HKNGTWFHLDVHG----VFNDGTELRISNIRSQDIGDYTCLATHVLYP 130
H+ G + IS + G Y C + P
Sbjct: 41 HREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSP 88
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 28.1 bits (61), Expect = 1.3
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 8/108 (7%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK-VVFLNRSP 84
P W + + ++ P + +L+
Sbjct: 465 PYCGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPM 524
Query: 85 NS-HKNGTWFHLDVH------GVFNDGTELRISNIRSQDIGDYTCLAT 125
S H +W H + G + L I N+ +Q G Y C A
Sbjct: 525 ESRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQ 572
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 27.0 bits (59), Expect = 1.4
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 75 CKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYP 130
C ++ + + + + G + L I +R+ D G Y C ++YP
Sbjct: 50 CAATYMMGNELTFLDDSICTGTSSG---NQVNLTIQGLRAMDTGLYIC-KVELMYP 101
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 27.6 bits (61), Expect = 1.4
Identities = 12/126 (9%), Positives = 25/126 (19%), Gaps = 45/126 (35%)
Query: 46 ISRVDKESPFGMASLNLTKIRESDQGWYECK-------------------------VVFL 80
+ R + + G Y C + +
Sbjct: 48 VDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSV 107
Query: 81 NRSPN------------SHKNGTWFHLDVHGVFN--------DGTELRISNIRSQDIGDY 120
+ P + F L G + E + + + G Y
Sbjct: 108 HPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTY 167
Query: 121 TCLATH 126
C ++
Sbjct: 168 RCFGSY 173
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 27.5 bits (61), Expect = 1.5
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
Y + E +KG+ ++ D + A + L+ +R D Y C
Sbjct: 50 YFSPGNDDFKYNERFKGKATLTA-DTSA--STAYVELSSLRSEDTAVYFC 96
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 27.2 bits (61), Expect = 1.6
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 104 GTE--LRISNIRSQDIGDYTCL 123
+ + ISNI D G Y C+
Sbjct: 76 NLDFSISISNITPADAGTYYCV 97
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 27.1 bits (60), Expect = 1.7
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 87 HKNGTWFHLD--VHGVFNDGTELRISNIRSQDIGDYTC 122
++ + + I +I + G Y C
Sbjct: 38 YREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRC 75
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 26.9 bits (59), Expect = 1.9
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 107 LRISNIRSQDIGDYTCLATH 126
L ++ ++ G Y C
Sbjct: 92 LTLNKFSKENEGYYFCSVIS 111
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 27.3 bits (60), Expect = 2.1
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 29 IWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNS 86
+ + + +SR KES L +T +++ +Y C +
Sbjct: 49 YYSQIVNDFQKGDIAEGYSVSREKKES----FPLTVTSAQKNPTAFYLCASSSRSSYEQY 104
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGD-----YTCLATHVLYPDLLVV 135
GT + E+ + +I CLAT YPD + +
Sbjct: 105 FGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATG-FYPDHVEL 157
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 27.0 bits (59), Expect = 2.2
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
+ L ++ + + Y C AT
Sbjct: 51 GTTSTLTMNPVSFGNEHSYLCTAT 74
Score = 25.1 bits (54), Expect = 9.8
Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 52 ESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISN 111
+ ++L + + ++ Y C S K ++++ D
Sbjct: 48 TNEGTTSTLTMNPVSFGNEHSYLC--TATCESRKLEKGIQ---VEIYSFPKDPEIHLSGP 102
Query: 112 IRSQDIGDYTCLATHVLYPDLLVV 135
+ + C V D L +
Sbjct: 103 LEAGKPITVKCSVADVYPFDRLEI 126
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 27.1 bits (60), Expect = 2.5
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
+I + + +++ R + + A + L +R +D Y C V +
Sbjct: 50 WINPYNGNKEFSAKFQDRVTFTADTSAN---TAYMELRSLRSADTAVYYCARVGPYSWDD 106
Query: 86 SHKNGTWFHLDVHGVFNDGTELRIS 110
S ++ + V+ GT + +S
Sbjct: 107 SPQDNYYMD-----VWGKGTTVIVS 126
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 26.6 bits (59), Expect = 2.6
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 102 NDGTELRISNIRSQDIGDYTCLATHVLYP 130
N + L +S +++ D Y C + +
Sbjct: 66 NTAS-LTVSGLQTDDEAVYYCGSLVGNWD 93
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 26.1 bits (57), Expect = 2.6
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 75 CKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYP 130
C F ++ + + + L I +R+ D G Y C ++YP
Sbjct: 48 CATTFTEKNTVGFLDYPFCSGTFNE---SRVNLTIQGLRAVDTGLYLC-KVELMYP 99
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 26.9 bits (60), Expect = 2.7
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
I YD + A+ KGR ISR D L + +R D Y C
Sbjct: 52 VISYDGSNKYYADSVKGRFTISR-DNSK--NTLYLQMNSLRAEDTAVYYC 98
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 26.2 bits (58), Expect = 2.7
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 104 GTE--LRISNIRSQDIGDYTC 122
+ + ISNI D G Y C
Sbjct: 71 NLDFSISISNITPADAGTYYC 91
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 26.3 bits (58), Expect = 2.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYPD 131
LRIS++R +D G Y C A +V + +
Sbjct: 68 LRISDLRVEDSGTYKCQAFYVFFAE 92
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 26.3 bits (58), Expect = 3.2
Identities = 13/126 (10%), Positives = 23/126 (18%), Gaps = 45/126 (35%)
Query: 46 ISRVDKESPFGMASLNLTKIRESDQGWYECK----------------VVFLNRSPN---- 85
+ R + + G Y C VV
Sbjct: 45 VDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSV 104
Query: 86 -----------------SHKNGTWFHLDVHGVFN--------DGTELRISNIRSQDIGDY 120
+ F L G + E + + + G Y
Sbjct: 105 HPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTY 164
Query: 121 TCLATH 126
C ++
Sbjct: 165 RCFGSY 170
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A
3chn_A 1r70_B 3cm9_A
Length = 475
Score = 26.8 bits (59), Expect = 3.3
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
+I + T +++++GR +R + A + L+ +R D Y C
Sbjct: 51 WISAGTGNTKYSQKFRGRVTFTRDTSAT---TAYMGLSSLRPEDTAVYYC 97
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC;
1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H
2mcp_H*
Length = 220
Score = 26.3 bits (59), Expect = 3.4
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
I DS + K + ISR + ++ L ++K+R D Y C
Sbjct: 50 EIHPDSGTINYTPSLKDKFIISRDNAKN---SLYLQMSKVRSEDTALYYC 96
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis,
esterolytic, FAB, immune system; 1.22A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H
1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C
1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B
1cfn_B ...
Length = 227
Score = 26.3 bits (59), Expect = 3.7
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
I+ S TH E++K + ++ D S A + L+ + D Y C
Sbjct: 50 NIYPGSSYTHYNEKFKNKATLTV-DTSS--STAYMQLSSLTSDDSAVYYC 96
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system
complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB:
3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H
3r06_B 3r08_H
Length = 253
Score = 26.3 bits (59), Expect = 4.0
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
I + T+ + KGR ISR + ++ L ++ ++ D Y C
Sbjct: 50 TINSNGASTYYPDTVKGRFTISRDNAKN---TLFLQMSSLKSEDTAMYYC 96
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens}
PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A
3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L
3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Length = 216
Score = 26.1 bits (58), Expect = 4.3
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 102 NDGTELRISNIRSQDIGDYTCLATHVLYP 130
T L I+ +++ D DY C
Sbjct: 70 TSAT-LGITGLQTGDEADYYCGTWDSSLN 97
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 26.3 bits (56), Expect = 4.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 107 LRISNIRSQDIGDYTCLAT 125
L I N+ D G Y CL+
Sbjct: 588 LLIFNLSEGDSGVYQCLSE 606
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 25.7 bits (57), Expect = 5.0
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 102 NDGTELRISNIRSQDIGDYTCLATH 126
+ L I+ +++D Y C
Sbjct: 71 DKAA-LTITGAQTEDEAIYFCALWS 94
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 25.9 bits (57), Expect = 5.1
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 102 NDGTELRISNIRSQDIGDYTC 122
D T L+IS + ++D+G Y C
Sbjct: 111 TDFT-LKISRVEAEDLGIYYC 130
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain;
human monoclonal antibody, FAB, third variable
antibody-antigen interaction; 1.80A {Homo sapiens} PDB:
3mls_H 3mlt_H 3mlu_H 3mlv_H
Length = 226
Score = 25.9 bits (58), Expect = 5.2
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
I+ D H + ++G+ +S DK A L T ++ SD G Y C R
Sbjct: 50 IIYPDDSDAHYSPSFEGQVTMSV-DKSI--STAYLQWTTLQASDTGKYFCT-----RLYL 101
Query: 86 SHKNGTWFHLDV 97
+ D+
Sbjct: 102 FEGAQSSNAFDL 113
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the
antigen combining site superantigen FAB VH3
specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
PDB: 1hez_B 1adq_H
Length = 223
Score = 25.9 bits (58), Expect = 5.3
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
I YD + A+ KGR ISR + ++ L + +R D Y C
Sbjct: 50 LISYDESNKYYADSVKGRFTISRDNSKN---TLYLQMNSLRAEDTAVYYC 96
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 25.0 bits (55), Expect = 5.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYPD 131
L I ++R +D G Y C A +
Sbjct: 68 LTIRDLRVEDSGTYKCKAYRRCAFN 92
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune
system-viral protein complex, envelope protein; HET:
NAG; 2.05A {Mus musculus}
Length = 261
Score = 25.6 bits (57), Expect = 5.9
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
I TH +++K + ++ DK S + L+ + D Y C
Sbjct: 56 RIDPSDNETHYNQDFKDKVTLTV-DKSS--STVYIQLSSLTSEDSAVYYC 102
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28
homodimer, immune system-signaling protein comple; HET:
NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Length = 140
Score = 25.5 bits (55), Expect = 6.3
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSP---NSHKNGTWFHL 95
+ L + + Y CK+ + P N NGT H+
Sbjct: 80 TFYLQNLYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIHV 119
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 25.9 bits (56), Expect = 6.4
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 94 HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ V + N +D G Y C+
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 24.9 bits (55), Expect = 6.8
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 104 GTE--LRISNIRSQDIGDYTC 122
+ +RISN+ +D G Y C
Sbjct: 75 NMDFSIRISNVTPEDAGTYYC 95
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 25.6 bits (56), Expect = 6.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYP 130
L IS + ++D DY C + +
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDN 95
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 25.2 bits (54), Expect = 7.0
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 24 DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRS 83
+ P W T + + S ++++ L+ + +D G Y C F +
Sbjct: 40 NRPHVTWCKLNGTTCVKLEDRQTSWKEEKN-ISFFILHFEPVLPNDNGSYRCSANFQSNL 98
Query: 84 PNSH 87
SH
Sbjct: 99 IESH 102
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 25.6 bits (57), Expect = 7.0
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
I T+ + KGR ISR + ++ L ++ +R +D Y C
Sbjct: 268 TISSGGTYTYYPDSVKGRFTISRDNAKN---TLYLQMSSLRSADTAMYYC 314
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate
antibody, immune system; HET: MAN; 1.75A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M*
1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H*
3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H
2fl5_H*
Length = 225
Score = 25.5 bits (57), Expect = 7.0
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 28 YIWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
I S A+ KGR +SR D E L + K+R D Y C
Sbjct: 50 SISTSSTYRDYADAVKGRFTVSRDDLED---FVYLQMHKMRVEDTAIYYC 96
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 24.9 bits (54), Expect = 7.3
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 26/92 (28%)
Query: 23 EDIPVYIWY----------------DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR 66
+ + Y WY + Y GR E + ASL + I
Sbjct: 27 QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGR------EIIYPNASLLIQNII 80
Query: 67 ESDQGWYECKVVFLNRSPNSHKNGTWFHLDVH 98
++D G+Y V + + + F V+
Sbjct: 81 QNDAGFYTLHV--IKSDLVNEEATGQFR--VY 108
Score = 24.5 bits (53), Expect = 8.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 100 VFNDGTELRISNIRSQDIGDYTCLATHVLYPDLL--VVLGSFHIH 142
++ + + L I NI D G YT HV+ DL+ G F ++
Sbjct: 68 IYPNAS-LLIQNIIQNDAGFYTL---HVIKSDLVNEEATGQFRVY 108
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome
C oxidase, high- resolution structure, immune system;
1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D*
3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A
1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L
1g7l_A 1g7m_A 1a7n_L ...
Length = 120
Score = 24.8 bits (55), Expect = 8.5
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 104 GTE--LRISNIRSQDIGDYTCLATHVLYP 130
GT+ L+I+++ +D G Y C + P
Sbjct: 68 GTQFSLKINSLLPEDFGSYYCQHHYGTPP 96
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 25.4 bits (56), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 102 NDGTELRISNIRSQDIGDYTC 122
D T LRIS + ++D+G Y C
Sbjct: 107 TDFT-LRISRVEAEDLGVYYC 126
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 24.5 bits (54), Expect = 8.7
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 29 IWYDSYPTHEAEEYKGR--ISRVDKESPFGMASLNLTKIRESDQGWYEC 75
+ D + A+ +GR + + + F L ++ +R D Y C
Sbjct: 48 FYGDDSRSEGADFTQGRFSVKHILTQKAF---HLVISPVRTEDSATYYC 93
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 24.6 bits (54), Expect = 8.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 107 LRISNIRSQDIGDYTC 122
LRIS++R +D G Y C
Sbjct: 68 LRISDLRVEDSGTYKC 83
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 25.0 bits (55), Expect = 9.4
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 102 NDGTELRISNIRSQDIGDYTCLATH 126
N T L IS ++ D DY C +
Sbjct: 68 NMAT-LTISKAQAGDEADYYCQSWD 91
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 24.8 bits (53), Expect = 9.5
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 24 DIPVYIWYDSYPTH-EAEEYKGRISRV-DKESPFGMASLNLTKIRESDQGWYECKVVFLN 81
P W T E ++ ++ + L+ I SD G Y C F +
Sbjct: 43 HRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS 102
Query: 82 RSPNSH 87
+ NSH
Sbjct: 103 QVINSH 108
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 24.9 bits (55), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 102 NDGTELRISNIRSQDIGDYTCLATH 126
D T L IS++ D Y C +T+
Sbjct: 69 TDFT-LTISDLECADAATYYCQSTY 92
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex,
immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Length = 115
Score = 24.4 bits (54), Expect = 9.9
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 104 GTE--LRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIHTGT 145
G + L ISNI+ +D Y C + + V G GT
Sbjct: 73 GADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFG-----GGT 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.430
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,303,162
Number of extensions: 125296
Number of successful extensions: 1052
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1031
Number of HSP's successfully gapped: 680
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)