RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy534
(145 letters)
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 38.5 bits (88), Expect = 5e-05
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 25 IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ +Y +A EY+GR + + G +L + +R SD+G Y C
Sbjct: 48 VHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFF 100
Score = 28.5 bits (62), Expect = 0.18
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 55 FGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTE----LRIS 110
+ ++ + ++ N + + + E LRI
Sbjct: 27 SPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQ 86
Query: 111 NIRSQDIGDYTCLATH 126
N+R D G YTC
Sbjct: 87 NVRFSDEGGYTCFFRD 102
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 37.5 bits (86), Expect = 8e-05
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 27 VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNS 86
+Y GR S +L L ++ D+G Y+C + +
Sbjct: 43 EVYLGKEKFDSVHSKYMGRTSFDS-----DSWTLRLHNLQIKDKGLYQCIIHHKKPTGMI 97
Query: 87 HKNGTWFHLDV 97
+ L V
Sbjct: 98 RIHQMNSELSV 108
Score = 29.4 bits (65), Expect = 0.062
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 53 SPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNI 112
+ SL+ + DQ V+L + + + + T LR+ N+
Sbjct: 19 ANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSK-YMGRTSFDSDSWT-LRLHNL 76
Query: 113 RSQDIGDYTCLATH 126
+ +D G Y C+ H
Sbjct: 77 QIKDKGLYQCIIHH 90
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 35.7 bits (81), Expect = 4e-04
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 56 GMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV 97
S+ + +R SD+G YEC V+ + ++ L V
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSV 104
Score = 31.0 bits (69), Expect = 0.019
Identities = 9/51 (17%), Positives = 15/51 (29%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
W + K + L + + + I +R D G Y C
Sbjct: 32 WQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 34.9 bits (79), Expect = 5e-04
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
G L + +++ D G+Y+C
Sbjct: 42 VLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRA 80
Score = 25.6 bits (55), Expect = 1.3
Identities = 8/48 (16%), Positives = 11/48 (22%)
Query: 30 WYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ T K L L ++ D G Y C
Sbjct: 32 EPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR 79
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 33.9 bits (77), Expect = 0.001
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDK-ESPFGMASLNLTKIRESDQGW 72
L++ +F +DI W + K + L + + D G
Sbjct: 15 LNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT 74
Query: 73 YECKVVFLNRSPNSHKNGTWFHLDVH 98
Y V N + +K L +
Sbjct: 75 YNVTVYSTNGTRILNKA---LDLRIL 97
Score = 30.0 bits (67), Expect = 0.032
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 61 NLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDY 120
N + D+ +E + K + + +G L+I N+ D G Y
Sbjct: 19 NFQMTDDIDEVRWERG--STLVAEFKRKMKPFLKSGAFEILANGD-LKIKNLTRDDSGTY 75
Query: 121 TCLATH 126
Sbjct: 76 NVTVYS 81
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 32.6 bits (73), Expect = 0.005
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 25 IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSP 84
+ E +K RI + + S+ + + SD G + C V P
Sbjct: 49 SIFHYAKGQPYIDEVGTFKERIQ-WVGDPSWKDGSIVIHNLDYSDNGTFTCDV---KNPP 104
Query: 85 NSHKNGTWFHLDV 97
+ + L V
Sbjct: 105 DIVGKTSQVTLYV 117
Score = 24.9 bits (53), Expect = 2.7
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 92 WFHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
+ DG+ + I N+ D G +TC
Sbjct: 69 RIQWVGDPSWKDGS-IVIHNLDYSDNGTFTC 98
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 31.9 bits (71), Expect = 0.011
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 27 VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ D + KGR+ + G AS+N+T ++ SD G Y+CKV
Sbjct: 57 ILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 107
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 31.1 bits (69), Expect = 0.013
Identities = 9/63 (14%), Positives = 17/63 (26%)
Query: 63 TKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
+R + C + + + L I N++ D G Y C
Sbjct: 12 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVC 71
Query: 123 LAT 125
+
Sbjct: 72 TGS 74
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 30.8 bits (69), Expect = 0.018
Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 4/49 (8%)
Query: 50 DKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVH 98
+E + SL I D G Y + N VH
Sbjct: 63 GREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQAT----VRFHVH 107
Score = 25.4 bits (55), Expect = 1.5
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 107 LRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIH 142
L I +D+G YT + + + H
Sbjct: 73 LLFQMITMKDMGVYTL---DMTDENYRRTQATVRFH 105
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.5 bits (68), Expect = 0.023
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
Query: 63 TKIRESDQGWYECKV------VFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQD 116
T ++ EC+V V ++ G + L I D
Sbjct: 10 TTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI-LIIEGATKAD 68
Query: 117 IGDYTCLAT 125
+Y+ + T
Sbjct: 69 AAEYSVMTT 77
Score = 27.1 bits (59), Expect = 0.32
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 20 ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
++D V + + + + RI L + ++D Y
Sbjct: 24 VSEDDANVKWFKNGEEIIPGPKSRYRIRVE-----GKKHILIIEGATKADAAEYSVMT 76
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 30.1 bits (67), Expect = 0.031
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 60 LNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGD 119
+ +++ CKV +PN + L + L I +++ D G
Sbjct: 10 EKVIVVKQGQDVTIPCKVTG-LPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGY 68
Query: 120 YTCLAT 125
Y C AT
Sbjct: 69 YGCRAT 74
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 30.1 bits (67), Expect = 0.033
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 27 VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ S+ T + R G L + ++ D Y C+V
Sbjct: 36 ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEV 86
Score = 27.1 bits (59), Expect = 0.48
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGT-ELRISNIRSQDI 117
S+ + + FL + P+ + + G L I N++ +D
Sbjct: 23 SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD---QGNFPLIIKNLKIEDS 79
Query: 118 GDYTC 122
Y C
Sbjct: 80 DTYIC 84
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.9 bits (66), Expect = 0.040
Identities = 9/72 (12%), Positives = 24/72 (33%)
Query: 56 GMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQ 115
G + ++ + ++ + + NS + + L I N+ S
Sbjct: 11 GNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS 70
Query: 116 DIGDYTCLATHV 127
D +Y + ++
Sbjct: 71 DEDEYEMESPNI 82
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 30.0 bits (66), Expect = 0.054
Identities = 5/54 (9%), Positives = 13/54 (24%), Gaps = 3/54 (5%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
++ + ++ D + + +D G YT
Sbjct: 64 DTGDSDEWVFDKKLLCETEGRVRVETTK---DRSIFTVEGAEKEDEGVYTVTVK 114
Score = 27.7 bits (60), Expect = 0.36
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 30 WYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ + RV E+ + + + D+G Y V
Sbjct: 66 GDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTV 113
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 29.1 bits (64), Expect = 0.071
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 84 PNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ H +D +EL I N+ D +Y C+A
Sbjct: 42 DGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 83
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 28.8 bits (63), Expect = 0.14
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 84 PNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
K F + +L + + D G+Y C A
Sbjct: 46 TADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 87
Score = 23.4 bits (49), Expect = 9.3
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 1/66 (1%)
Query: 13 MLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKES-PFGMASLNLTKIRESDQG 71
+L+ + + D A+ K R + L + D G
Sbjct: 21 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 80
Query: 72 WYECKV 77
Y C+
Sbjct: 81 EYYCQA 86
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 28.3 bits (62), Expect = 0.16
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
+K+ LD L + N+ + G+YTC A++
Sbjct: 40 YKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASY 79
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 28.0 bits (61), Expect = 0.19
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 65 IRESDQGWYECKVV-FLNRSPNSHKNGT--WFHLDVHGVFNDGTELRISNIRSQDIGDYT 121
+E + C VV L + G DV + L+I I+ D G Y
Sbjct: 13 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 72
Query: 122 CLAT 125
C
Sbjct: 73 CEGR 76
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 27.7 bits (60), Expect = 0.26
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
E K V + + N V + + S++ +D G+YTC+ +
Sbjct: 32 RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVS 85
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 27.2 bits (59), Expect = 0.30
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 92 WFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ L + ++ D G Y C
Sbjct: 41 DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 74
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 27.3 bits (59), Expect = 0.36
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 94 HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
V+ + L I N+ +D G+YTCLA
Sbjct: 63 AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAG 94
Score = 25.7 bits (55), Expect = 1.5
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 5/59 (8%)
Query: 19 FADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
E D P + + G + + L + + D G Y C
Sbjct: 40 IKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK-----EIEVLYIRNVTFEDAGEYTCLA 93
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 27.3 bits (59), Expect = 0.39
Identities = 7/54 (12%), Positives = 12/54 (22%), Gaps = 1/54 (1%)
Query: 72 WYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ S D L I++ + G Y C +
Sbjct: 40 KWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE-LHITDAQPAFTGGYRCEVS 92
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 27.1 bits (59), Expect = 0.44
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 63 TKIRESDQGWYECKV-------VFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQ 115
K+R + KV + + ++ +G++L I R +
Sbjct: 10 QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS---ENGSKLTILAARQE 66
Query: 116 DIGDYTCLAT 125
G YT L
Sbjct: 67 HCGCYTLLVE 76
Score = 23.3 bits (49), Expect = 8.8
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 59 SLNLTKIRESDQGWYECKV 77
L + R+ G Y V
Sbjct: 57 KLTILAARQEHCGCYTLLV 75
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR
{Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 27.1 bits (59), Expect = 0.47
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
N L + ++ D G+YTC+
Sbjct: 59 NQHWSLIMESVVPSDKGNYTCVVE 82
Score = 26.3 bits (57), Expect = 0.77
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
P W + + E G + SL + + SD+G Y C V
Sbjct: 35 PTMRWLKNGKEFKQEHRIGGYKVRN-----QHWSLIMESVVPSDKGNYTCVV 81
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 26.5 bits (57), Expect = 0.67
Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 63 TKIRESDQGWYECKV-------VFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQ 115
++ ++C L ++ + V + N +
Sbjct: 11 VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR 70
Query: 116 DIGDYTCLAT 125
D G Y C+
Sbjct: 71 DAGKYRCMIR 80
>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding
Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 121
Score = 26.7 bits (58), Expect = 0.71
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 27 VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ ++ EE + R + +L++ R SD G Y ++
Sbjct: 53 APVATNNPAWAVQEETRDRFHLLGDPQT-KNCTLSIRDARMSDAGRYFFRM 102
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 25.9 bits (56), Expect = 0.86
Identities = 12/63 (19%), Positives = 15/63 (23%), Gaps = 2/63 (3%)
Query: 63 TKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
T EC K + L I N+ +D G Y C
Sbjct: 15 TYALTGQMVTLECFAF--GNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYEC 72
Query: 123 LAT 125
A
Sbjct: 73 EAE 75
Score = 23.6 bits (50), Expect = 7.0
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 57 MASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTW-FHLDVH 98
L++ + D+G YEC+ N T+ + +H
Sbjct: 54 EPLLHIQNVDFEDEGTYECEAE------NIKGRDTYQGRIIIH 90
>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 108
Score = 26.0 bits (56), Expect = 1.2
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
+ + S P A + I F ++ +T +RE D G Y C++ S N
Sbjct: 41 CIRLVTSSKPRTMAWTSRFTIWDDPDAGFF---TVTMTDLREEDSGHYWCRIYR--PSDN 95
Query: 86 SHKNGTWFHLDV 97
S F+L V
Sbjct: 96 SVSKSVRFYLVV 107
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 25.6 bits (55), Expect = 1.3
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 74 ECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
C R + + G ELR S + +D G Y C+A
Sbjct: 22 SCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE 73
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 25.4 bits (54), Expect = 1.4
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 65 IRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGV----FNDGTELRISNIRSQDIGDY 120
RE++ EC + ++ + D L ++ D G Y
Sbjct: 14 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHY 73
Query: 121 TCLAT 125
C A
Sbjct: 74 QCFAE 78
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.4 bits (54), Expect = 1.7
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 84 PNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
P + K+ F + + EL + + D G+Y+C A
Sbjct: 45 PTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 86
>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 25.0 bits (53), Expect = 1.8
Identities = 9/62 (14%), Positives = 14/62 (22%), Gaps = 1/62 (1%)
Query: 65 IRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFN-DGTELRISNIRSQDIGDYTCL 123
+ +C + L I N+ D G Y CL
Sbjct: 9 FKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCL 68
Query: 124 AT 125
+
Sbjct: 69 SE 70
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 24.9 bits (53), Expect = 2.4
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 87 HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
+ + + L I+ ++ D G+YT A
Sbjct: 39 DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77
Score = 23.3 bits (49), Expect = 8.6
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 48 RVDKESPFGMASLNLTKIRESDQGWYECKV 77
+ K L + +++ D+G Y +
Sbjct: 47 KYMKRYNGNDYGLTINRVKGDDKGEYTVRA 76
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 118
Score = 25.2 bits (54), Expect = 2.4
Identities = 8/64 (12%), Positives = 20/64 (31%)
Query: 28 YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSH 87
+ S ++ + + + +L L ++ D G Y + + +
Sbjct: 49 QVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLD 108
Query: 88 KNGT 91
GT
Sbjct: 109 VKGT 112
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 24.9 bits (53), Expect = 2.7
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 59 SLNLTKIRESDQGWYECKVVFLNRS---PNSHKNGTWFHLDVHGVFNDGTELRISNIRSQ 115
++ I S G + +L + T F LR++
Sbjct: 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 73
Query: 116 DIGDYTCLAT 125
+ G+YT LA
Sbjct: 74 NNGNYTLLAA 83
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 24.4 bits (52), Expect = 3.0
Identities = 7/67 (10%), Positives = 17/67 (25%), Gaps = 4/67 (5%)
Query: 63 TKIRESDQGWYECKV----VFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIG 118
++ + + ++ + N + + L IS D
Sbjct: 16 YQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDA 75
Query: 119 DYTCLAT 125
Y C+
Sbjct: 76 AYQCVVG 82
>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 24.2 bits (51), Expect = 3.1
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 63 TKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTC 122
+I + + C + T + + + L I N + +D G+Y C
Sbjct: 11 NRIFKGENVTLTCNGN-----NFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKC 65
Query: 123 LATH 126
Sbjct: 66 QHQQ 69
>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 24.4 bits (53), Expect = 3.8
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 17/85 (20%)
Query: 53 SPF---GMASLNLTKIRESDQGWYECKV------VFLNRSPNS--HKNGTWFHLDVHGVF 101
PF + + E + C+V V L + P +G ++
Sbjct: 2 RPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGK------RIIW 55
Query: 102 NDGTELRISNIRSQDIGDYTCLATH 126
+ ISN ++IG TC AT
Sbjct: 56 DSRKGFIISNATYKEIGLLTCEATV 80
>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline
oxidase) {Streptomyces sp. [TaxId: 1931]}
Length = 290
Score = 25.0 bits (54), Expect = 4.6
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 3/25 (12%)
Query: 88 KNGTWFHLDV---HGVFNDGTELRI 109
+ G + LD H N R
Sbjct: 145 RPGEIWFLDAATVHSAVNFSEISRQ 169
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 24.2 bits (51), Expect = 4.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 105 TELRISNIRSQDIGDYTCLAT 125
E++I + G+Y C T
Sbjct: 68 FEMQIIKAKDNFAGNYRCEVT 88
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 91
Score = 23.7 bits (50), Expect = 5.9
Identities = 3/15 (20%), Positives = 10/15 (66%)
Query: 111 NIRSQDIGDYTCLAT 125
++++ D G+Y+ +
Sbjct: 61 SVQASDEGNYSVVVE 75
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 23.8 bits (50), Expect = 6.3
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 65 IRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLA 124
+ E + C R+ + +K + + + + + I+N +D G Y C
Sbjct: 12 VMEGQPLFLRCHG---WRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTG 68
Query: 125 THVLYP 130
Sbjct: 69 KVWQLD 74
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId:
9103]}
Length = 102
Score = 23.7 bits (50), Expect = 6.4
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 111 NIRSQDIGDYTCLAT 125
+ D YTC A
Sbjct: 71 EVCGDDDAKYTCKAV 85
>d1rwha3 b.30.5.2 (A:373-644) Chondroitinase AC {Arthrobacter
aurescens [TaxId: 43663]}
Length = 272
Score = 24.1 bits (52), Expect = 8.4
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 76 KVVFLNRSPNSHKNGTWFHLDVHG--VFNDGTELRISN 111
+ + +G W HL+ G D + L +
Sbjct: 176 TIAGTAGTVEVLGDGRWVHLEGFGGYAMLDDSPLHVLR 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.430
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 572,615
Number of extensions: 24748
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 66
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)