Query psy5340
Match_columns 164
No_of_seqs 119 out of 1476
Neff 9.2
Searched_HMMs 46136
Date Sat Aug 17 00:05:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0044|consensus 99.8 5.8E-20 1.3E-24 132.2 12.5 124 3-161 62-185 (193)
2 PTZ00183 centrin; Provisional 99.7 2.3E-16 4.9E-21 110.8 12.6 142 4-154 16-157 (158)
3 COG5126 FRQ1 Ca2+-binding prot 99.7 2.8E-16 6E-21 109.8 12.3 139 5-153 20-158 (160)
4 KOG0034|consensus 99.7 1.2E-16 2.6E-21 114.9 10.7 117 5-160 66-184 (187)
5 COG5126 FRQ1 Ca2+-binding prot 99.7 1.9E-16 4E-21 110.7 10.4 116 38-163 17-138 (160)
6 KOG0027|consensus 99.7 2.3E-16 5E-21 110.7 10.3 121 38-163 5-131 (151)
7 KOG0027|consensus 99.7 2.4E-15 5.2E-20 105.5 12.8 143 4-151 7-149 (151)
8 PTZ00184 calmodulin; Provision 99.7 3.7E-15 8E-20 103.4 13.0 137 5-150 11-147 (149)
9 KOG0037|consensus 99.7 2.2E-15 4.7E-20 108.7 11.7 124 4-149 93-218 (221)
10 KOG0028|consensus 99.6 5.4E-14 1.2E-18 96.9 10.3 118 38-164 30-153 (172)
11 KOG0031|consensus 99.5 8.2E-14 1.8E-18 95.4 10.0 111 38-161 29-145 (171)
12 KOG0028|consensus 99.5 2.2E-12 4.7E-17 89.0 12.0 138 5-151 33-170 (172)
13 PTZ00183 centrin; Provisional 99.5 1.1E-12 2.4E-17 91.9 10.4 117 38-163 14-136 (158)
14 KOG0037|consensus 99.4 8.4E-13 1.8E-17 95.5 9.6 108 41-163 57-170 (221)
15 PTZ00184 calmodulin; Provision 99.4 1.4E-12 3E-17 90.4 10.4 117 38-163 8-130 (149)
16 KOG0038|consensus 99.4 1.5E-12 3.3E-17 88.6 9.7 115 4-159 70-185 (189)
17 KOG0036|consensus 99.4 4.7E-12 1E-16 99.1 11.7 134 5-153 14-148 (463)
18 KOG0044|consensus 99.4 3.6E-12 7.7E-17 92.0 9.8 102 4-151 25-128 (193)
19 PF13499 EF-hand_7: EF-hand do 99.3 8.2E-12 1.8E-16 75.3 6.8 66 42-149 1-66 (66)
20 PLN02964 phosphatidylserine de 99.2 3.2E-11 6.9E-16 100.9 8.6 101 38-151 140-243 (644)
21 KOG0030|consensus 99.2 2.2E-10 4.9E-15 77.4 9.5 107 38-151 8-116 (152)
22 PF13499 EF-hand_7: EF-hand do 99.1 2.5E-10 5.5E-15 68.7 6.0 61 7-67 2-66 (66)
23 KOG2643|consensus 99.1 3.9E-10 8.3E-15 89.0 8.1 126 15-151 209-346 (489)
24 KOG4223|consensus 99.1 8.8E-10 1.9E-14 84.1 9.2 145 2-151 74-228 (325)
25 cd05022 S-100A13 S-100A13: S-1 99.1 8.9E-10 1.9E-14 70.3 7.2 65 41-151 8-75 (89)
26 KOG4223|consensus 99.0 6.8E-10 1.5E-14 84.7 7.4 142 5-151 113-269 (325)
27 cd00252 SPARC_EC SPARC_EC; ext 99.0 8E-10 1.7E-14 73.9 6.3 64 38-151 45-108 (116)
28 KOG0031|consensus 99.0 7.6E-09 1.6E-13 71.2 10.2 86 20-151 79-165 (171)
29 KOG0034|consensus 99.0 4.7E-09 1E-13 75.7 9.2 101 38-151 30-132 (187)
30 cd05026 S-100Z S-100Z: S-100Z 99.0 4.3E-09 9.4E-14 67.8 7.8 69 41-151 10-81 (93)
31 cd05025 S-100A1 S-100A1: S-100 99.0 4.6E-09 1E-13 67.5 7.8 72 39-152 7-81 (92)
32 cd05031 S-100A10_like S-100A10 98.9 7.8E-09 1.7E-13 66.7 7.8 70 40-151 7-79 (94)
33 cd05027 S-100B S-100B: S-100B 98.9 5E-09 1.1E-13 66.9 6.5 69 41-151 8-79 (88)
34 smart00027 EH Eps15 homology d 98.9 7.7E-09 1.7E-13 67.0 7.3 66 38-151 7-72 (96)
35 cd00052 EH Eps15 homology doma 98.9 5.7E-09 1.2E-13 62.7 6.2 60 44-151 2-61 (67)
36 KOG0036|consensus 98.9 1.4E-08 3.1E-13 79.9 9.7 112 38-163 11-128 (463)
37 cd00213 S-100 S-100: S-100 dom 98.8 2.5E-08 5.4E-13 63.5 7.6 72 39-151 6-79 (88)
38 KOG2643|consensus 98.8 2.4E-08 5.2E-13 79.1 7.4 132 12-151 293-453 (489)
39 cd00051 EFh EF-hand, calcium b 98.7 6.2E-08 1.3E-12 56.4 6.4 61 43-149 2-62 (63)
40 KOG0377|consensus 98.7 1.5E-07 3.3E-12 74.8 10.2 145 4-151 463-615 (631)
41 cd05029 S-100A6 S-100A6: S-100 98.7 1.1E-07 2.4E-12 60.6 7.5 68 41-151 10-79 (88)
42 cd00051 EFh EF-hand, calcium b 98.7 9.5E-08 2E-12 55.6 6.2 61 7-67 2-62 (63)
43 cd00052 EH Eps15 homology doma 98.7 1.4E-07 2.9E-12 56.6 6.6 62 8-71 2-63 (67)
44 PF13833 EF-hand_8: EF-hand do 98.6 9.8E-08 2.1E-12 55.0 5.6 31 120-150 22-52 (54)
45 KOG0030|consensus 98.6 1.5E-06 3.4E-11 59.0 11.6 139 4-150 10-150 (152)
46 cd05023 S-100A11 S-100A11: S-1 98.6 2.2E-07 4.7E-12 59.4 7.3 71 40-151 8-80 (89)
47 PLN02964 phosphatidylserine de 98.6 1.3E-07 2.8E-12 79.6 7.2 64 6-69 180-243 (644)
48 smart00027 EH Eps15 homology d 98.6 5E-07 1.1E-11 58.5 7.6 67 4-72 9-75 (96)
49 cd05022 S-100A13 S-100A13: S-1 98.5 3.7E-07 8.1E-12 58.2 6.6 68 5-72 8-78 (89)
50 KOG0751|consensus 98.5 4.9E-07 1.1E-11 72.9 8.6 134 5-151 73-207 (694)
51 cd00213 S-100 S-100: S-100 dom 98.5 4.7E-07 1E-11 57.6 6.9 69 4-72 7-82 (88)
52 cd05025 S-100A1 S-100A1: S-100 98.5 5.3E-07 1.1E-11 57.9 7.0 69 4-72 8-83 (92)
53 PF13833 EF-hand_8: EF-hand do 98.5 3.5E-07 7.7E-12 52.7 5.5 52 18-69 1-53 (54)
54 PF00036 EF-hand_1: EF hand; 98.5 9.5E-08 2.1E-12 48.0 2.6 27 43-69 2-28 (29)
55 cd05026 S-100Z S-100Z: S-100Z 98.5 5.2E-07 1.1E-11 58.1 6.7 68 5-72 10-84 (93)
56 cd05027 S-100B S-100B: S-100B 98.5 7E-07 1.5E-11 56.9 7.1 69 4-72 7-82 (88)
57 cd05031 S-100A10_like S-100A10 98.5 5.3E-07 1.2E-11 58.1 6.6 69 3-71 6-81 (94)
58 KOG4666|consensus 98.5 3.4E-07 7.4E-12 70.3 6.1 108 5-159 259-367 (412)
59 PF00036 EF-hand_1: EF hand; 98.5 1.9E-07 4.2E-12 46.9 3.2 27 125-151 2-28 (29)
60 cd00252 SPARC_EC SPARC_EC; ext 98.4 8.5E-07 1.8E-11 59.3 6.6 60 5-68 48-107 (116)
61 cd05030 calgranulins Calgranul 98.4 1.4E-06 3E-11 55.5 7.1 70 41-151 8-79 (88)
62 PF14658 EF-hand_9: EF-hand do 98.4 5.6E-07 1.2E-11 53.7 4.4 63 45-111 2-65 (66)
63 KOG0041|consensus 98.4 2.4E-06 5.2E-11 61.5 7.4 69 38-111 96-164 (244)
64 cd05023 S-100A11 S-100A11: S-1 98.3 3.2E-06 7E-11 54.0 6.9 68 5-72 9-83 (89)
65 PF13405 EF-hand_6: EF-hand do 98.3 4.9E-07 1.1E-11 46.1 2.2 27 42-68 1-27 (31)
66 PF10591 SPARC_Ca_bdg: Secrete 98.3 2.5E-07 5.4E-12 61.7 1.2 64 37-148 50-113 (113)
67 KOG4251|consensus 98.2 6.7E-06 1.5E-10 61.1 7.9 141 3-150 99-263 (362)
68 KOG2562|consensus 98.2 6.8E-06 1.5E-10 65.9 8.4 108 4-148 310-421 (493)
69 cd05029 S-100A6 S-100A6: S-100 98.2 6.7E-06 1.5E-10 52.4 6.7 67 6-72 11-82 (88)
70 KOG2562|consensus 98.2 7.3E-06 1.6E-10 65.7 8.1 133 6-151 226-379 (493)
71 PF14658 EF-hand_9: EF-hand do 98.2 4.9E-06 1.1E-10 49.7 5.1 61 9-69 2-64 (66)
72 KOG0040|consensus 98.2 7.8E-06 1.7E-10 73.2 7.9 105 39-151 2251-2361(2399)
73 PF13202 EF-hand_5: EF hand; P 98.1 4.7E-06 1E-10 40.3 3.0 25 125-149 1-25 (25)
74 cd05024 S-100A10 S-100A10: A s 98.1 4.7E-05 1E-09 48.5 8.1 67 42-151 9-76 (91)
75 cd05030 calgranulins Calgranul 98.0 4.1E-05 8.9E-10 48.7 6.9 67 5-71 8-81 (88)
76 PF13202 EF-hand_5: EF hand; P 98.0 7.3E-06 1.6E-10 39.6 2.4 23 44-66 2-24 (25)
77 PF13405 EF-hand_6: EF-hand do 98.0 1.1E-05 2.3E-10 41.0 3.2 26 125-150 2-27 (31)
78 PF12763 EF-hand_4: Cytoskelet 97.9 6.1E-05 1.3E-09 49.4 7.1 65 38-151 7-71 (104)
79 PRK12309 transaldolase/EF-hand 97.9 3.5E-05 7.5E-10 61.8 6.5 55 3-70 332-386 (391)
80 PRK12309 transaldolase/EF-hand 97.9 3.8E-05 8.3E-10 61.6 6.3 55 38-151 331-385 (391)
81 PF14788 EF-hand_10: EF hand; 97.8 7.1E-05 1.5E-09 42.3 5.3 49 22-70 2-50 (51)
82 PF14788 EF-hand_10: EF hand; 97.7 0.00012 2.7E-09 41.3 4.6 31 120-150 18-48 (51)
83 KOG0377|consensus 97.7 0.00012 2.6E-09 58.8 6.1 66 4-69 546-615 (631)
84 KOG4065|consensus 97.6 0.00024 5.1E-09 46.9 6.0 76 39-148 65-142 (144)
85 PF12763 EF-hand_4: Cytoskelet 97.4 0.0011 2.4E-08 43.5 7.4 68 4-74 9-76 (104)
86 KOG0041|consensus 97.4 0.00054 1.2E-08 49.6 5.9 66 4-69 98-163 (244)
87 KOG4578|consensus 97.3 0.00015 3.2E-09 56.1 2.4 68 40-152 332-399 (421)
88 KOG0038|consensus 97.3 0.00032 6.9E-09 48.3 3.6 62 86-151 75-136 (189)
89 KOG4251|consensus 97.1 0.0021 4.5E-08 48.2 6.5 98 5-148 236-342 (362)
90 PF10591 SPARC_Ca_bdg: Secrete 97.0 0.00045 9.7E-09 46.0 2.3 59 5-65 54-112 (113)
91 smart00054 EFh EF-hand, calciu 97.0 0.0011 2.3E-08 31.7 3.2 27 125-151 2-28 (29)
92 smart00054 EFh EF-hand, calciu 97.0 0.0009 1.9E-08 32.0 2.5 27 43-69 2-28 (29)
93 cd05024 S-100A10 S-100A10: A s 96.9 0.0072 1.6E-07 38.6 6.8 66 6-72 9-79 (91)
94 KOG0040|consensus 96.9 0.0067 1.5E-07 55.5 8.8 101 5-109 2253-2360(2399)
95 KOG3555|consensus 96.8 0.0018 3.8E-08 50.6 4.2 64 38-151 247-310 (434)
96 PF09069 EF-hand_3: EF-hand; 96.8 0.014 3.1E-07 37.1 7.7 82 40-162 2-86 (90)
97 KOG0751|consensus 96.7 0.017 3.8E-07 47.4 9.0 103 39-151 31-136 (694)
98 KOG4347|consensus 96.6 0.0031 6.6E-08 53.0 4.2 60 3-63 553-612 (671)
99 KOG0169|consensus 96.2 0.05 1.1E-06 46.8 9.3 95 43-151 138-232 (746)
100 KOG0046|consensus 96.0 0.019 4.1E-07 47.4 6.0 67 40-109 18-84 (627)
101 KOG1955|consensus 95.9 0.02 4.3E-07 47.0 5.6 66 38-151 228-293 (737)
102 KOG4286|consensus 95.7 0.049 1.1E-06 46.8 7.1 115 8-161 473-590 (966)
103 KOG1029|consensus 95.6 0.021 4.6E-07 49.2 4.7 65 38-150 192-256 (1118)
104 PF05042 Caleosin: Caleosin re 95.4 0.25 5.4E-06 35.2 9.0 30 40-69 95-124 (174)
105 KOG4666|consensus 95.3 0.01 2.3E-07 46.2 2.0 85 18-151 240-324 (412)
106 PF05042 Caleosin: Caleosin re 94.9 0.015 3.3E-07 41.3 1.7 33 121-153 94-126 (174)
107 PF09279 EF-hand_like: Phospho 94.2 0.11 2.5E-06 32.2 4.3 64 43-151 2-69 (83)
108 KOG3866|consensus 93.8 0.14 3.1E-06 39.8 4.9 98 24-151 226-324 (442)
109 KOG4578|consensus 93.7 0.071 1.5E-06 41.7 3.1 59 11-69 339-398 (421)
110 PF09279 EF-hand_like: Phospho 93.5 0.18 4E-06 31.2 4.3 63 6-69 1-69 (83)
111 KOG0169|consensus 92.9 0.52 1.1E-05 40.8 7.3 71 86-161 140-213 (746)
112 KOG4065|consensus 92.4 0.36 7.7E-06 32.2 4.5 57 10-66 72-142 (144)
113 KOG0035|consensus 92.1 0.35 7.6E-06 42.7 5.5 101 38-147 744-848 (890)
114 KOG4347|consensus 91.3 0.55 1.2E-05 40.0 5.6 49 22-70 535-584 (671)
115 PLN02952 phosphoinositide phos 91.0 1.9 4.2E-05 36.9 8.5 51 18-69 13-65 (599)
116 KOG1029|consensus 90.4 0.68 1.5E-05 40.4 5.3 64 5-70 195-258 (1118)
117 KOG0039|consensus 90.3 1.4 2.9E-05 38.2 7.2 91 19-154 2-92 (646)
118 KOG1707|consensus 89.0 2.1 4.5E-05 36.4 7.1 31 123-153 315-345 (625)
119 KOG1955|consensus 88.5 0.94 2E-05 37.6 4.7 66 3-70 229-294 (737)
120 KOG3555|consensus 88.2 0.51 1.1E-05 37.3 2.9 61 5-69 250-310 (434)
121 KOG0046|consensus 85.6 4.2 9.2E-05 34.1 6.9 64 6-70 20-86 (627)
122 PF08976 DUF1880: Domain of un 85.5 1.1 2.3E-05 29.9 2.9 31 3-33 5-35 (118)
123 PF09068 EF-hand_2: EF hand; 84.1 5 0.00011 27.2 5.9 102 21-150 14-124 (127)
124 KOG4004|consensus 84.1 0.64 1.4E-05 34.0 1.6 30 122-151 221-250 (259)
125 KOG2243|consensus 82.9 1.6 3.5E-05 40.9 3.7 60 45-110 4061-4120(5019)
126 KOG3866|consensus 82.0 3.2 6.9E-05 32.6 4.6 77 9-110 248-324 (442)
127 PF12174 RST: RCD1-SRO-TAF4 (R 79.3 2.2 4.7E-05 25.8 2.4 48 20-70 7-54 (70)
128 KOG2871|consensus 76.6 1.2 2.7E-05 35.5 1.0 67 38-108 306-372 (449)
129 PF08726 EFhand_Ca_insen: Ca2+ 74.2 5.9 0.00013 23.9 3.3 31 121-152 4-34 (69)
130 PF00404 Dockerin_1: Dockerin 73.3 6.6 0.00014 17.8 2.6 15 51-65 1-15 (21)
131 KOG1265|consensus 71.5 23 0.00049 32.0 7.3 46 98-151 204-249 (1189)
132 PF09068 EF-hand_2: EF hand; 69.5 23 0.0005 24.0 5.8 64 6-69 42-125 (127)
133 PF08414 NADPH_Ox: Respiratory 66.4 33 0.00071 22.3 5.6 60 7-71 32-94 (100)
134 PF12174 RST: RCD1-SRO-TAF4 (R 65.5 16 0.00034 22.1 3.9 46 98-151 8-53 (70)
135 KOG4301|consensus 65.4 39 0.00085 27.0 6.9 59 10-69 115-173 (434)
136 KOG4004|consensus 65.4 3 6.5E-05 30.6 0.8 54 13-68 195-249 (259)
137 PF05517 p25-alpha: p25-alpha 61.9 50 0.0011 23.0 6.5 24 47-70 8-31 (154)
138 KOG0042|consensus 61.5 16 0.00035 31.2 4.5 29 41-69 593-621 (680)
139 KOG1265|consensus 61.1 43 0.00093 30.4 7.0 91 22-151 205-299 (1189)
140 TIGR01848 PHA_reg_PhaR polyhyd 61.0 45 0.00097 21.9 6.3 22 48-69 10-31 (107)
141 KOG0998|consensus 57.8 4 8.6E-05 36.6 0.4 65 38-150 280-344 (847)
142 KOG0998|consensus 56.2 5.1 0.00011 35.9 0.8 63 6-70 284-346 (847)
143 PF14513 DAG_kinase_N: Diacylg 55.5 27 0.00058 24.1 4.1 49 20-70 6-61 (138)
144 PF05517 p25-alpha: p25-alpha 54.6 32 0.0007 24.0 4.5 68 9-76 3-76 (154)
145 PF12631 GTPase_Cys_C: Catalyt 54.3 21 0.00046 21.4 3.2 34 42-75 24-57 (73)
146 PF12486 DUF3702: ImpA domain 50.6 32 0.00068 24.0 3.9 46 41-86 69-114 (148)
147 KOG0042|consensus 50.4 32 0.0007 29.5 4.5 65 6-70 594-658 (680)
148 PLN02228 Phosphoinositide phos 45.7 83 0.0018 27.1 6.3 65 3-69 22-92 (567)
149 KOG1707|consensus 45.6 23 0.0005 30.4 3.0 62 40-109 314-376 (625)
150 KOG2243|consensus 45.1 50 0.0011 31.9 5.1 68 10-78 4062-4129(5019)
151 COG4304 Uncharacterized protei 44.6 47 0.001 23.0 3.9 52 82-133 103-154 (166)
152 COG3877 Uncharacterized protei 44.3 90 0.0019 20.5 4.9 23 58-80 69-91 (122)
153 PF02761 Cbl_N2: CBL proto-onc 43.8 79 0.0017 19.9 4.5 50 20-69 21-70 (85)
154 PF01023 S_100: S-100/ICaBP ty 43.2 39 0.00085 18.2 2.8 28 42-69 7-36 (44)
155 PF09862 DUF2089: Protein of u 41.7 84 0.0018 20.9 4.7 20 58-77 61-80 (113)
156 PF07879 PHB_acc_N: PHB/PHA ac 41.6 14 0.00031 21.8 0.9 23 130-152 10-32 (64)
157 KOG4403|consensus 41.1 53 0.0012 27.2 4.3 54 17-70 40-97 (575)
158 cd07176 terB tellurite resista 40.6 91 0.002 19.6 4.8 83 55-146 16-100 (111)
159 KOG0035|consensus 40.3 80 0.0017 28.7 5.6 68 84-151 749-816 (890)
160 PLN02952 phosphoinositide phos 40.2 77 0.0017 27.5 5.4 30 121-151 36-65 (599)
161 PF08355 EF_assoc_1: EF hand a 37.4 53 0.0011 20.1 3.0 21 15-35 12-32 (76)
162 CHL00185 ycf59 magnesium-proto 35.9 1.2E+02 0.0025 24.3 5.3 39 124-162 80-119 (351)
163 PF04876 Tenui_NCP: Tenuivirus 35.0 1.6E+02 0.0035 20.7 6.8 58 5-70 83-140 (175)
164 PLN02228 Phosphoinositide phos 34.6 1.4E+02 0.0029 25.8 5.9 30 38-69 21-50 (567)
165 KOG2301|consensus 33.9 38 0.00081 32.8 2.8 70 39-110 1415-1484(1592)
166 KOG2419|consensus 33.7 47 0.001 29.1 3.1 65 5-69 437-533 (975)
167 PF09107 SelB-wing_3: Elongati 33.6 76 0.0016 17.7 3.0 27 137-163 8-35 (50)
168 PLN02508 magnesium-protoporphy 33.2 1.7E+02 0.0037 23.4 5.8 40 124-163 80-120 (357)
169 PF03979 Sigma70_r1_1: Sigma-7 32.6 49 0.0011 20.3 2.4 16 54-69 18-33 (82)
170 cd00074 H2A Histone 2A; H2A is 32.0 1.4E+02 0.003 19.9 4.6 40 121-160 55-94 (115)
171 PF11363 DUF3164: Protein of u 31.8 2.1E+02 0.0045 21.0 6.2 43 118-160 114-159 (195)
172 PRK13654 magnesium-protoporphy 31.3 1.5E+02 0.0032 23.8 5.2 39 124-162 84-123 (355)
173 KOG2557|consensus 30.9 3E+02 0.0065 22.5 7.2 52 21-72 74-125 (427)
174 cd01047 ACSF Aerobic Cyclase S 30.2 1.7E+02 0.0037 23.1 5.3 39 124-162 64-103 (323)
175 TIGR02029 AcsF magnesium-proto 29.5 1.5E+02 0.0033 23.5 5.0 35 35-69 29-65 (337)
176 smart00414 H2A Histone 2A. 29.4 1.3E+02 0.0029 19.6 4.1 40 121-160 44-83 (106)
177 KOG2419|consensus 29.1 57 0.0012 28.6 2.9 33 42-74 438-470 (975)
178 KOG1954|consensus 28.5 87 0.0019 25.8 3.6 27 121-147 475-501 (532)
179 PLN02230 phosphoinositide phos 28.1 2.3E+02 0.005 24.7 6.3 66 3-69 27-102 (598)
180 PF11829 DUF3349: Protein of u 27.9 1.1E+02 0.0023 19.8 3.3 49 22-70 20-68 (96)
181 KOG2871|consensus 27.7 59 0.0013 26.4 2.6 31 121-151 307-337 (449)
182 PLN02223 phosphoinositide phos 27.5 1.7E+02 0.0036 25.1 5.3 72 38-110 13-92 (537)
183 cd07177 terB_like tellurium re 27.3 1.5E+02 0.0033 18.1 6.0 18 55-72 13-30 (104)
184 PF09373 PMBR: Pseudomurein-bi 27.2 57 0.0012 16.3 1.7 16 136-151 1-16 (33)
185 cd07313 terB_like_2 tellurium 27.0 1.7E+02 0.0036 18.4 8.0 85 55-148 13-97 (104)
186 PLN02222 phosphoinositide phos 27.0 1.9E+02 0.0041 25.1 5.6 29 39-69 23-51 (581)
187 PLN00153 histone H2A; Provisio 26.2 1.6E+02 0.0035 20.1 4.1 40 121-160 59-98 (129)
188 PF10668 Phage_terminase: Phag 25.9 1.4E+02 0.0029 17.5 3.3 33 126-159 10-42 (60)
189 PLN02230 phosphoinositide phos 25.7 2.7E+02 0.0058 24.3 6.3 31 38-69 26-56 (598)
190 KOG4286|consensus 25.2 1.2E+02 0.0027 27.1 4.2 65 6-70 421-499 (966)
191 PLN02222 phosphoinositide phos 24.8 2.5E+02 0.0054 24.4 5.9 64 4-69 24-90 (581)
192 PTZ00017 histone H2A; Provisio 24.7 1.8E+02 0.0039 20.0 4.2 40 121-160 62-101 (134)
193 PLN00157 histone H2A; Provisio 24.3 1.7E+02 0.0037 20.1 4.0 40 121-160 61-100 (132)
194 PLN00156 histone H2AX; Provisi 23.9 1.9E+02 0.0042 20.0 4.2 40 121-160 64-103 (139)
195 PF00427 PBS_linker_poly: Phyc 23.4 1.1E+02 0.0025 20.8 3.0 23 137-159 42-64 (131)
196 TIGR03573 WbuX N-acetyl sugar 23.3 1.6E+02 0.0035 23.3 4.4 11 55-65 300-310 (343)
197 cd08324 CARD_NOD1_CARD4 Caspas 23.2 2E+02 0.0044 18.0 4.0 31 119-151 42-72 (85)
198 PF06226 DUF1007: Protein of u 23.0 73 0.0016 23.5 2.2 25 127-151 54-78 (212)
199 cd06404 PB1_aPKC PB1 domain is 22.9 1.5E+02 0.0033 18.5 3.3 47 19-69 17-67 (83)
200 PF11020 DUF2610: Domain of un 22.7 1.4E+02 0.003 18.5 3.0 31 121-151 47-77 (82)
201 PF03556 Cullin_binding: Culli 22.7 1.8E+02 0.004 19.2 3.9 23 127-149 94-116 (117)
202 PRK09430 djlA Dna-J like membr 22.5 3.6E+02 0.0078 20.7 6.3 87 54-148 68-154 (267)
203 PF09851 SHOCT: Short C-termin 22.2 1.1E+02 0.0025 14.9 2.2 15 55-69 14-28 (31)
204 PF05819 NolX: NolX protein; 20.8 4.7E+02 0.01 22.4 6.5 121 38-162 365-496 (624)
205 PF14164 YqzH: YqzH-like prote 20.3 2.1E+02 0.0044 17.0 3.6 32 120-151 5-37 (64)
206 PF05099 TerB: Tellurite resis 20.1 2.7E+02 0.0059 18.3 6.0 82 54-144 36-117 (140)
No 1
>KOG0044|consensus
Probab=99.84 E-value=5.8e-20 Score=132.23 Aligned_cols=124 Identities=43% Similarity=0.672 Sum_probs=109.9
Q ss_pred chHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhh
Q psy5340 3 THDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVL 82 (164)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~ 82 (164)
+....+++|+.||.+++|.|+|.||+.+++.+.++..+++++++|+.||.||+|+|++.|+..++.++...+|....+ .
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~-~ 140 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP-E 140 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC-c
Confidence 345788999999999999999999999999999999999999999999999999999999999999987766652222 1
Q ss_pred ccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHhh
Q psy5340 83 EDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQV 161 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~~ 161 (164)
. ....++.+..+|+.+|.|+||.||++||.......|.+..++..
T Consensus 141 ~----------------------------------~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 141 D----------------------------------EETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQ 185 (193)
T ss_pred c----------------------------------cccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhh
Confidence 1 34578899999999999999999999999999999999988854
No 2
>PTZ00183 centrin; Provisional
Probab=99.71 E-value=2.3e-16 Score=110.77 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=117.8
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhc
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~ 83 (164)
...+++.|..+|.+++|.|+..+|..++..+........+..+|..+|.+++|.|++.+|..++.... .. ......
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~---~~-~~~~~~ 91 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL---GE-RDPREE 91 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh---cC-CCcHHH
Confidence 35788899999999999999999999988765445567899999999999999999999998876531 11 122334
Q ss_pred cchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChH
Q psy5340 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDED 154 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~ 154 (164)
+..+...+|.+++|.++.++|...+.... ....+..+..+|..+|.+++|.|++++|..++...|.
T Consensus 92 l~~~F~~~D~~~~G~i~~~e~~~~l~~~~-----~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 92 ILKAFRLFDDDKTGKISLKNLKRVAKELG-----ETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 56788999999999999999999987543 3456788999999999999999999999999988764
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.71 E-value=2.8e-16 Score=109.79 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=86.1
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhcc
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~ 84 (164)
.++.+-|+.+|++++|.|+..++..++..+........+..+|..+|. ++|.|+..+|..++... -...++..++
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~----~~~~~~~Eel 94 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK----LKRGDKEEEL 94 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH----hccCCcHHHH
Confidence 455666666666666666666666666655556666666666666666 66666666666555542 1233344445
Q ss_pred chhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcCh
Q psy5340 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDE 153 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~ 153 (164)
...+..+|.+++|.|+..++...+.... ....++.+..+++.+|.+++|.|++++|.+.+...|
T Consensus 95 ~~aF~~fD~d~dG~Is~~eL~~vl~~lg-----e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 95 REAFKLFDKDHDGYISIGELRRVLKSLG-----ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred HHHHHHhCCCCCceecHHHHHHHHHhhc-----ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 5666666666666666666666665333 445566666666677766667777666666655443
No 4
>KOG0034|consensus
Probab=99.71 E-value=1.2e-16 Score=114.94 Aligned_cols=117 Identities=28% Similarity=0.489 Sum_probs=98.9
Q ss_pred HHHHHHHhhcCcCCCcc-ccHHHHHHHhHHhccc-cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhh
Q psy5340 5 DKWERTLSLLSFAEIFP-IFSQDFIQGLSVLSRG-SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVL 82 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~-i~~~ef~~~l~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~ 82 (164)
.-.+|++..++++++|. |+|.+|+..++++.+. ..+++++.+|+.||.+++|+|+++|+..++..+ +|.+... .
T Consensus 66 p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~---~~~~~~~-~ 141 (187)
T KOG0034|consen 66 PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMM---VGENDDM-S 141 (187)
T ss_pred cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH---HccCCcc-h
Confidence 45689999999998888 9999999999999875 555699999999999999999999999999986 3322211 0
Q ss_pred ccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHh
Q psy5340 83 EDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQ 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~ 160 (164)
.......++..|..+|.|+||.||++||++++...|.+.+.+.
T Consensus 142 -----------------------------------~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~ 184 (187)
T KOG0034|consen 142 -----------------------------------DEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMT 184 (187)
T ss_pred -----------------------------------HHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcC
Confidence 1235778999999999999999999999999999999887653
No 5
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.70 E-value=1.9e-16 Score=110.67 Aligned_cols=116 Identities=22% Similarity=0.394 Sum_probs=100.4
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.+.++++.+|..+|++++|.|++.+|..+++. +|++++.. ....|++..+. +++.|+|++|+.++.....
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~----lg~~~s~~-ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~---- 86 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRS----LGFNPSEA-EINKLFEEIDA-GNETVDFPEFLTVMSVKLK---- 86 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHH----cCCCCcHH-HHHHHHHhccC-CCCccCHHHHHHHHHHHhc----
Confidence 56689999999999999999999999999997 68877443 34588888888 9999999999999987653
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc------ChHHHHHHhhhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN------DEDIKRSIQVFD 163 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~------~~~~~~~~~~~d 163 (164)
....++.+.++|+.||+|++|+|+..++..+++. ..++..++..+|
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d 138 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYD 138 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcC
Confidence 3346889999999999999999999999999987 566888888776
No 6
>KOG0027|consensus
Probab=99.69 E-value=2.3e-16 Score=110.67 Aligned_cols=121 Identities=24% Similarity=0.383 Sum_probs=98.9
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.+...++.+|+.||.+++|+|+..|+..+++. +|..|+. .++..+++..+.+++|.|++++|+.++.........
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~----lg~~~t~-~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRS----LGQNPTE-EELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH----cCCCCCH-HHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 45568899999999999999999999999998 6776533 345689999999999999999999999865533221
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc------ChHHHHHHhhhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN------DEDIKRSIQVFD 163 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~------~~~~~~~~~~~d 163 (164)
.....+.+..+|+.||+|++|+||.+|++.++.. ..++..|++..|
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d 131 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVD 131 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcC
Confidence 1124568999999999999999999999999987 456888887665
No 7
>KOG0027|consensus
Probab=99.67 E-value=2.4e-15 Score=105.51 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=123.4
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhc
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~ 83 (164)
...+.+.|..||.+++|.|+-.++..++..+.....+.++..++..+|.+++|.|+..+|..++...............+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 46789999999999999999999999999998888899999999999999999999999999999742211111012346
Q ss_pred cchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
+......+|.+++|.|+..++...+.... .....+.+..+++..|.|+||.|++.+|.+++..
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 77889999999999999999999998776 5556889999999999999999999999998864
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.66 E-value=3.7e-15 Score=103.38 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=112.6
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhcc
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~ 84 (164)
..+.+.|..+|.+++|.|++.+|..++..+......+.+..+|..+|.+++|.|++++|..++.... .........
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~----~~~~~~~~~ 86 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKM----KDTDSEEEI 86 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc----cCCcHHHHH
Confidence 4677899999999999999999999887766545567899999999999999999999998877531 111222344
Q ss_pred chhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy5340 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCL 150 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~ 150 (164)
..++...|.+++|.++.++|...+.... .....+.+..+|..+|.+++|.|+++||..++.
T Consensus 87 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 87 KEAFKVFDRDGNGFISAAELRHVMTNLG-----EKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHhhCCCCCCeEeHHHHHHHHHHHC-----CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 5788999999999999999998886432 234677899999999999999999999998875
No 9
>KOG0037|consensus
Probab=99.66 E-value=2.2e-15 Score=108.74 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=107.2
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhc
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~ 83 (164)
.+...-|+..||.+.+|.|++.||..+|..+. .++.+|+.||.|++|.|+..||++++.. +|...++...
T Consensus 93 ~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~------~Wr~vF~~~D~D~SG~I~~sEL~~Al~~----~Gy~Lspq~~ 162 (221)
T KOG0037|consen 93 IETCRLMISMFDRDNSGTIGFKEFKALWKYIN------QWRNVFRTYDRDRSGTIDSSELRQALTQ----LGYRLSPQFY 162 (221)
T ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH------HHHHHHHhcccCCCCcccHHHHHHHHHH----cCcCCCHHHH
Confidence 35677899999999999999999999999775 8999999999999999999999999999 6777655443
Q ss_pred cchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcc--cHHHHHHHH
Q psy5340 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVV--TLDEFLECC 149 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~I--s~~E~~~~l 149 (164)
..++...++-+++.+.|++|++++. ....+.++|+.+|.+..|.| ++++|..+.
T Consensus 163 -~~lv~kyd~~~~g~i~FD~FI~ccv-----------~L~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 163 -NLLVRKYDRFGGGRIDFDDFIQCCV-----------VLQRLTEAFRRRDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred -HHHHHHhccccCCceeHHHHHHHHH-----------HHHHHHHHHHHhccccceeEEEeHHHHHHHh
Confidence 3566777777799999999999997 56678899999999999987 688888764
No 10
>KOG0028|consensus
Probab=99.56 E-value=5.4e-14 Score=96.91 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=100.7
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.+.++++.+|..||++++|+|+.+||+.++++ +|..+... ++..++...++.+.|.++|++|+..+..+...
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmra----lGFE~~k~-ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e--- 101 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRA----LGFEPKKE-EILKLLADVDKEGSGKITFEDFRRVMTVKLGE--- 101 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHH----cCCCcchH-HHHHHHHhhhhccCceechHHHHHHHHHHHhc---
Confidence 45689999999999999999999999999998 67776432 33489999999999999999999999876532
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc-Ch-----HHHHHHhhhcC
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN-DE-----DIKRSIQVFDT 164 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~-~~-----~~~~~~~~~d~ 164 (164)
..+.+.+..+|+.+|-|++|.||+.+|+.+... .| ++..||.-+|+
T Consensus 102 -~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~ 153 (172)
T KOG0028|consen 102 -RDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADR 153 (172)
T ss_pred -cCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcc
Confidence 237889999999999999999999999999887 44 79999887764
No 11
>KOG0031|consensus
Probab=99.54 E-value=8.2e-14 Score=95.40 Aligned_cols=111 Identities=20% Similarity=0.325 Sum_probs=87.1
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.+.++++++|.+.|+|++|.|.+++++..+.+ +|+. .++.++..|+++.....+..+ |+-++++.+.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aS----lGk~-~~d~elDaM~~Ea~gPINft~----FLTmfGekL~---- 95 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLAS----LGKI-ASDEELDAMMKEAPGPINFTV----FLTMFGEKLN---- 95 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHH----cCCC-CCHHHHHHHHHhCCCCeeHHH----HHHHHHHHhc----
Confidence 68889999999999999999999999999998 6776 344455577777665555555 5555554331
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc------ChHHHHHHhh
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN------DEDIKRSIQV 161 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~------~~~~~~~~~~ 161 (164)
...+++.+..+|+.||.+++|+|..+.++++|.+ ..++..|++.
T Consensus 96 gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~ 145 (171)
T KOG0031|consen 96 GTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYRE 145 (171)
T ss_pred CCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 4457889999999999999999999999999988 4557766653
No 12
>KOG0028|consensus
Probab=99.46 E-value=2.2e-12 Score=89.03 Aligned_cols=138 Identities=15% Similarity=0.170 Sum_probs=121.0
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhcc
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~ 84 (164)
.+++.-|..|+++++|.|++.|+..++..+-.....+++..+-.-+|+++.|.|+.++|+..+... +|... +.+++
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k---~~e~d-t~eEi 108 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK---LGERD-TKEEI 108 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH---HhccC-cHHHH
Confidence 467788999999999999999997777777766778888999999999999999999999998874 56655 67777
Q ss_pred chhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
..++...|-+.+|.|++-.|...+-.+. +...++.+..+...+|.+++|.|..+||..+++.
T Consensus 109 ~~afrl~D~D~~Gkis~~~lkrvakeLg-----enltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 109 KKAFRLFDDDKTGKISQRNLKRVAKELG-----ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHcccccCCCCcCHHHHHHHHHHhC-----ccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 8999999999999999999999987666 5566889999999999999999999999998864
No 13
>PTZ00183 centrin; Provisional
Probab=99.45 E-value=1.1e-12 Score=91.90 Aligned_cols=117 Identities=19% Similarity=0.297 Sum_probs=94.7
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.+..++..+|..+|.+++|.|+..||..++.. +|..+.. ..+..++..++.+++|.+++++|+..+.....
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~----~g~~~~~-~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~---- 84 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRS----LGFEPKK-EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG---- 84 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----hCCCCCH-HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc----
Confidence 45567899999999999999999999999987 4554332 34568889999999999999999998764321
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc------ChHHHHHHhhhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN------DEDIKRSIQVFD 163 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~------~~~~~~~~~~~d 163 (164)
.......++.+|+.+|.+++|.|+..||..++.. ..++..++..+|
T Consensus 85 ~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d 136 (158)
T PTZ00183 85 ERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEAD 136 (158)
T ss_pred CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 1234567899999999999999999999999875 445777887776
No 14
>KOG0037|consensus
Probab=99.45 E-value=8.4e-13 Score=95.45 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=95.1
Q ss_pred HHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccc
Q psy5340 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGS 120 (164)
Q Consensus 41 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 120 (164)
..+..+|...|.++.|.|+-+|++++|.. .+-.+.....++.|+..+|++.+|.+.+.||.+.|.
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn----~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~----------- 121 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSN----GTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK----------- 121 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhc----CCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH-----------
Confidence 46788999999999999999999999886 344566777899999999999999999999999998
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhc-----ChHHHHH-Hhhhc
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLN-----DEDIKRS-IQVFD 163 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~-----~~~~~~~-~~~~d 163 (164)
.-+.++.+|+.||+|++|.|+..|+.+.+.. +|++.++ +++||
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd 170 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYD 170 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhc
Confidence 6778999999999999999999999999987 7775554 67776
No 15
>PTZ00184 calmodulin; Provisional
Probab=99.44 E-value=1.4e-12 Score=90.37 Aligned_cols=117 Identities=23% Similarity=0.371 Sum_probs=93.8
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.....+...|..+|.+++|.|+.+||..++.. +|..+. ...+..++..++.+.+|.+++++|+..+......
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~----~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~--- 79 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRS----LGQNPT-EAELQDMINEVDADGNGTIDFPEFLTLMARKMKD--- 79 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH----hCCCCC-HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC---
Confidence 34567889999999999999999999999876 565543 3355688999999999999999999998754321
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc------ChHHHHHHhhhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN------DEDIKRSIQVFD 163 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~------~~~~~~~~~~~d 163 (164)
....+.+..+|+.+|.+++|.|+.+|+..++.. ...+..++..+|
T Consensus 80 -~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
T PTZ00184 80 -TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
T ss_pred -CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcC
Confidence 224567899999999999999999999998854 344666776665
No 16
>KOG0038|consensus
Probab=99.44 E-value=1.5e-12 Score=88.59 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=95.3
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhcc-ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhh
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSR-GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVL 82 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~ 82 (164)
....+||...|..+|.|.++|+.|+..+++++. +..+-++..+|++||-|++++|...++...++.+.+ -+. +.
T Consensus 70 npfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr-~eL--s~-- 144 (189)
T KOG0038|consen 70 NPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR-DEL--SD-- 144 (189)
T ss_pred ChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh-ccC--CH--
Confidence 456688999999999999999999999999986 455568899999999999999999999999998643 010 11
Q ss_pred ccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHH
Q psy5340 83 EDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSI 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~ 159 (164)
......++++.+..|.||||++++.||..++...|++...|
T Consensus 145 ------------------------------------eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTF 185 (189)
T KOG0038|consen 145 ------------------------------------EEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTF 185 (189)
T ss_pred ------------------------------------HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhh
Confidence 11345677888999999999999999999999999877654
No 17
>KOG0036|consensus
Probab=99.40 E-value=4.7e-12 Score=99.08 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=118.5
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccc-cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhc
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRG-SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~ 83 (164)
-.+..+|..||.+++|.++..+....+..+... ...+..+.+|+..|.|++|.++.+||++.+.. .+..
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~----------~E~~ 83 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN----------KELE 83 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH----------hHHH
Confidence 367899999999999999999999888887754 56678889999999999999999999999986 4455
Q ss_pred cchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcCh
Q psy5340 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDE 153 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~ 153 (164)
+..++..+|.++||.++..|....+.+.. ....++.+..+|+..|+++++.|+++||...+...|
T Consensus 84 l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g-----i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 84 LYRIFQSIDLEHDGKIDPNEIWRYLKDLG-----IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HHHHHhhhccccCCccCHHHHHHHHHHhC-----CccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 66889999999999999999999987665 456788999999999999999999999999988755
No 18
>KOG0044|consensus
Probab=99.39 E-value=3.6e-12 Score=92.02 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=87.8
Q ss_pred hHHHHHHHhhcCcC-CCccccHHHHHHHhHHhcc-ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhh
Q psy5340 4 HDKWERTLSLLSFA-EIFPIFSQDFIQGLSVLSR-GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETV 81 (164)
Q Consensus 4 ~~~~~~~~~~~d~~-~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~ 81 (164)
..+++++++.|-.+ ++|.++..+|..+++.+.+ +.+......+|+.||.|++|.|+..||..++..+.
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~---------- 94 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS---------- 94 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc----------
Confidence 45788888888866 4899999999999988886 78888999999999999999999999877777642
Q ss_pred hccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 82 LEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.+..++.+..+|+.||.|++|+|+++|+..++..
T Consensus 95 ------------------------------------rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 95 ------------------------------------RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred ------------------------------------CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 3457788889999999999999999999999876
No 19
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.32 E-value=8.2e-12 Score=75.33 Aligned_cols=66 Identities=27% Similarity=0.573 Sum_probs=54.3
Q ss_pred HHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccch
Q psy5340 42 KLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSV 121 (164)
Q Consensus 42 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 121 (164)
+++.+|+.+|.+++|+|+.+||..++..++ ..... ...
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~----~~~~~--------------------------------------~~~ 38 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLG----RDMSD--------------------------------------EES 38 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTT----SHSTH--------------------------------------HHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhc----ccccH--------------------------------------HHH
Confidence 468899999999999999999999999842 21111 125
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy5340 122 TNRVDSVFKKMDKNQDGVVTLDEFLECC 149 (164)
Q Consensus 122 ~~~~~~~f~~~D~d~~g~Is~~E~~~~l 149 (164)
++.+..+|+.+|.+++|.|+++||..++
T Consensus 39 ~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 39 DEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5688899999999999999999999874
No 20
>PLN02964 phosphatidylserine decarboxylase
Probab=99.24 E-value=3.2e-11 Score=100.91 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=84.3
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhc-ccchhhh--ccchhhhhhhhccchhhhHHHHHHHHHHhhhh
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMG-KFAETVL--EDGSVTNRVDSVFKMTNIVTAIYELMGKFAET 114 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 114 (164)
.+.++++.+|..+|+|++|.| +..+++. +| ..|+... .+..+++.+|.+++|.+++++|++.+....
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrs----lG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg-- 209 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVS----CSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG-- 209 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHH----hCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc--
Confidence 466789999999999999997 6666665 67 3554443 256889999999999999999999998543
Q ss_pred hhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 115 VLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 115 ~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
....++.+..+|+.+|+|++|.|+.+||..++..
T Consensus 210 ---~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 ---NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred ---cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 2346778999999999999999999999999887
No 21
>KOG0030|consensus
Probab=99.20 E-value=2.2e-10 Score=77.39 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=85.7
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhc--cchhhhHHHHHHHHHHhhhhh
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSV--FKMTNIVTAIYELMGKFAETV 115 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~ 115 (164)
++..+++.+|..||..++|+|+......++++ +|.+|+.... .+.+....++ ....++|+.|+.+.....+..
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa----lG~nPT~aeV-~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRA----LGQNPTNAEV-LKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHH----hcCCCcHHHH-HHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 56689999999999999999999999999998 7999976543 3444444444 567999999999988766552
Q ss_pred hcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 116 LEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 116 ~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
. .. .-+..-+-++.||++++|.|...|+++++.+
T Consensus 83 ~-q~-t~edfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 83 D-QG-TYEDFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred c-cC-cHHHHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 2 22 3344557889999999999999999999987
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.11 E-value=2.5e-10 Score=68.73 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=53.6
Q ss_pred HHHHHhhcCcCCCccccHHHHHHHhHHhcc----ccHHHHHHHhhhhcccCCCCcccHHHHHHHH
Q psy5340 7 WERTLSLLSFAEIFPIFSQDFIQGLSVLSR----GSVEEKLRWTFTLYDINGDGRITREEMTNIV 67 (164)
Q Consensus 7 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~----~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 67 (164)
+.++|..+|++++|.|+.+||..++..+.. ......+..+|+.+|+|++|.|+.+||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 678999999999999999999999988763 3455677888999999999999999998764
No 23
>KOG2643|consensus
Probab=99.10 E-value=3.9e-10 Score=89.04 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=98.4
Q ss_pred CcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHh--cc--cc--------hhhh
Q psy5340 15 SFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM--GK--FA--------ETVL 82 (164)
Q Consensus 15 d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~--g~--~~--------~~~~ 82 (164)
+.+.+|-|||.||+-++++++ .++..+.-+|++||.||||-|+.+||..+...+.... |- .. ....
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS--~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLS--IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHc--cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 445689999999999999987 5677889999999999999999999998876542211 11 00 1111
Q ss_pred ccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 83 EDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
+..-...-+++++++.++.++|...+- .+.++.++--|..+|+..+|.|+..+|..++-.
T Consensus 287 nsaL~~yFFG~rg~~kLs~deF~~F~e---------~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~ 346 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSIDEFLKFQE---------NLQEEILELEFERFDKGDSGAISEVDFAELLLA 346 (489)
T ss_pred hhhHHHHhhccCCCccccHHHHHHHHH---------HHHHHHHHHHHHHhCcccccccCHHHHHHHHHH
Confidence 111223348899999999999999984 667889999999999999999999999988765
No 24
>KOG4223|consensus
Probab=99.08 E-value=8.8e-10 Score=84.13 Aligned_cols=145 Identities=15% Similarity=0.111 Sum_probs=111.4
Q ss_pred CchHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHh---cccc
Q psy5340 2 NTHDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM---GKFA 78 (164)
Q Consensus 2 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~---g~~~ 78 (164)
++.....+++..+|.+++|.|+..|...++....+....+.....+..+|.|.+|.|+++|.....-..-- . ....
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~-~~~~~~d~ 152 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD-LPDEFPDE 152 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc-Cccccccc
Confidence 45678889999999999999999999998887766677778889999999999999999999877664100 0 0000
Q ss_pred hhhh-------ccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 79 ETVL-------EDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 79 ~~~~-------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.... ......+..|.+++|.++++||.+.+..-- -..+.+-.+.......|+|+||+|+++||..-+..
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe----~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEE----HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhh----cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 0000 122568889999999999999999875321 12234557888999999999999999999987765
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.06 E-value=8.9e-10 Score=70.34 Aligned_cols=65 Identities=25% Similarity=0.402 Sum_probs=51.3
Q ss_pred HHHHHhhhhccc-CCCCcccHHHHHHHHHH-HHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcc
Q psy5340 41 EKLRWTFTLYDI-NGDGRITREEMTNIVTA-IYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLED 118 (164)
Q Consensus 41 ~~~~~~F~~~D~-~~~G~I~~~e~~~~l~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 118 (164)
..+..+|+.||. +++|+|+..||+.+++. ++..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l-------------------------------------------- 43 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL-------------------------------------------- 43 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc--------------------------------------------
Confidence 467899999999 99999999999999997 54311
Q ss_pred cchH-HHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 119 GSVT-NRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 119 ~~~~-~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.. +.++.+++.+|.|+||.|+++||..++..
T Consensus 44 --s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 44 --KDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred --cCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 22 56777777888888888888888777765
No 26
>KOG4223|consensus
Probab=99.05 E-value=6.8e-10 Score=84.73 Aligned_cols=142 Identities=17% Similarity=0.104 Sum_probs=105.6
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhc------c--c------cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLS------R--G------SVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~------~--~------~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
....+-|..+|.+++|.|++.++.....-.. . . .....-+.-|+..|.|++|.+|.+||.+++.=
T Consensus 113 ~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHP- 191 (325)
T KOG4223|consen 113 EEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHP- 191 (325)
T ss_pred HHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccCh-
Confidence 4567778889999999999999988765321 1 0 12234457899999999999999999987652
Q ss_pred HHHhcccc-hhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy5340 71 YELMGKFA-ETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC 149 (164)
Q Consensus 71 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l 149 (164)
--+| -....+..-+...|++++|.|+++||+.-+........+..+......+.+..+|+|+||+++.+|+..++
T Consensus 192 ----Ee~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI 267 (325)
T KOG4223|consen 192 ----EEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWI 267 (325)
T ss_pred ----hhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhccc
Confidence 0011 11223334577899999999999999999986554333444555566689999999999999999999887
Q ss_pred hc
Q psy5340 150 LN 151 (164)
Q Consensus 150 ~~ 151 (164)
.-
T Consensus 268 ~P 269 (325)
T KOG4223|consen 268 LP 269 (325)
T ss_pred CC
Confidence 65
No 27
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.03 E-value=8e-10 Score=73.91 Aligned_cols=64 Identities=25% Similarity=0.565 Sum_probs=55.1
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
....++.+.|..+|.|++|.|+.+|+..+. +
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l----------------------------------------------- 75 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L----------------------------------------------- 75 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-----------------------------------------------
Confidence 456789999999999999999999999765 1
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
...+..+..+|..+|.|+||.||++||..++..
T Consensus 76 -~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 76 -DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred -cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 014667889999999999999999999999944
No 28
>KOG0031|consensus
Probab=99.00 E-value=7.6e-09 Score=71.22 Aligned_cols=86 Identities=19% Similarity=0.287 Sum_probs=60.8
Q ss_pred ccccHHHHHHHhHHh-ccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchh
Q psy5340 20 FPIFSQDFIQGLSVL-SRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMT 98 (164)
Q Consensus 20 g~i~~~ef~~~l~~~-~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
|+|+|.-|+.++..- ....+++.+..+|+.||+++.|.|..+.++.+|...+
T Consensus 79 gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g--------------------------- 131 (171)
T KOG0031|consen 79 GPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG--------------------------- 131 (171)
T ss_pred CCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc---------------------------
Confidence 444555555544322 2235666667777777777777777777776666532
Q ss_pred hhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 99 NIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 99 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
+...++.|+.+|+.+-.+..|.|++..|..+++.
T Consensus 132 -------------------Dr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 132 -------------------DRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred -------------------ccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 4457889999999999999999999999999874
No 29
>KOG0034|consensus
Probab=98.98 E-value=4.7e-09 Score=75.74 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=83.3
Q ss_pred cHHHHHHHhhhhcccC-CCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchh-hhHHHHHHHHHHhhhhh
Q psy5340 38 SVEEKLRWTFTLYDIN-GDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMT-NIVTAIYELMGKFAETV 115 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~-~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~ 115 (164)
+....+...|..+|.+ ++|.|+.+||..+.. +..+|-. .+++..++.++++. |+|++|+..+.....
T Consensus 30 ~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-----~~~Np~~----~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~-- 98 (187)
T KOG0034|consen 30 NEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-----LALNPLA----DRIIDRFDTDGNGDPVDFEEFVRLLSVFSP-- 98 (187)
T ss_pred HHHHHHHHHHHHhccccccCccCHHHHHHHHH-----HhcCcHH----HHHHHHHhccCCCCccCHHHHHHHHhhhcC--
Confidence 4556788899999999 999999999999984 3444422 28899999999998 999999999987651
Q ss_pred hcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 116 LEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 116 ~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
....++.++-+|+.||.+++|+|+.+|+.+++..
T Consensus 99 --~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 99 --KASKREKLRFAFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred --CccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 2234469999999999999999999999999875
No 30
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.97 E-value=4.3e-09 Score=67.84 Aligned_cols=69 Identities=20% Similarity=0.410 Sum_probs=53.5
Q ss_pred HHHHHhhhhcc-cCCCC-cccHHHHHHHHHHH-HHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 41 EKLRWTFTLYD-INGDG-RITREEMTNIVTAI-YELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 41 ~~~~~~F~~~D-~~~~G-~I~~~e~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
..+..+|+.|| .+++| +|+.+||+.++... +..++
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~------------------------------------------ 47 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS------------------------------------------ 47 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc------------------------------------------
Confidence 46778899998 78998 59999999999762 22111
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
....+..+..+++.+|.|++|.|+++||..++..
T Consensus 48 ~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 48 SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 1114567888999999999999999999988876
No 31
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.96 E-value=4.6e-09 Score=67.53 Aligned_cols=72 Identities=22% Similarity=0.419 Sum_probs=56.8
Q ss_pred HHHHHHHhhhhcc-cCCCC-cccHHHHHHHHHH-HHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhh
Q psy5340 39 VEEKLRWTFTLYD-INGDG-RITREEMTNIVTA-IYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETV 115 (164)
Q Consensus 39 ~~~~~~~~F~~~D-~~~~G-~I~~~e~~~~l~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 115 (164)
..+.+..+|+.|| .+++| .|+..|++.+++. ++..++..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~-------------------------------------- 48 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQ-------------------------------------- 48 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCC--------------------------------------
Confidence 3457899999997 99999 5999999999985 44322211
Q ss_pred hcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcC
Q psy5340 116 LEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLND 152 (164)
Q Consensus 116 ~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~ 152 (164)
..++.++.+|+.+|.+++|.|+++||..++...
T Consensus 49 ----~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 49 ----KDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred ----CCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 145578889999999999999999999888763
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.92 E-value=7.8e-09 Score=66.74 Aligned_cols=70 Identities=27% Similarity=0.503 Sum_probs=55.1
Q ss_pred HHHHHHhhhhccc-CC-CCcccHHHHHHHHHH-HHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhh
Q psy5340 40 EEKLRWTFTLYDI-NG-DGRITREEMTNIVTA-IYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVL 116 (164)
Q Consensus 40 ~~~~~~~F~~~D~-~~-~G~I~~~e~~~~l~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 116 (164)
...+..+|..||. ++ +|.|+.+|++.+++. ++..+|.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~---------------------------------------- 46 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN---------------------------------------- 46 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc----------------------------------------
Confidence 4578899999997 87 699999999999986 3332332
Q ss_pred cccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 117 EDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 117 ~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
...++.+..+++.+|.+++|.|+++||..++..
T Consensus 47 --~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 47 --QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred --cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 124557888899999999999999999988875
No 33
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.91 E-value=5e-09 Score=66.85 Aligned_cols=69 Identities=20% Similarity=0.398 Sum_probs=52.9
Q ss_pred HHHHHhhhhcc-cCCCC-cccHHHHHHHHHH-HHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 41 EKLRWTFTLYD-INGDG-RITREEMTNIVTA-IYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 41 ~~~~~~F~~~D-~~~~G-~I~~~e~~~~l~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
..+..+|+.|| .+++| .|+.+||+.+|+. +...+|.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~----------------------------------------- 46 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE----------------------------------------- 46 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-----------------------------------------
Confidence 47889999998 79999 5999999999986 1111222
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
...+..+..+++.+|.|++|.|+++||..++..
T Consensus 47 -~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 47 -IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred -CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 224556888888888888888888888887764
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.91 E-value=7.7e-09 Score=67.01 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=55.2
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.+...++.+|..+|.+++|.|+.++++.+++.. |
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~------------------------------------------ 40 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----G------------------------------------------ 40 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----C------------------------------------------
Confidence 456789999999999999999999999998862 2
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
..++.+..+|..+|.+++|.|+++||..++..
T Consensus 41 --~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 41 --LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred --CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 24556788888899999999999999888765
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.90 E-value=5.7e-09 Score=62.70 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=50.2
Q ss_pred HHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHH
Q psy5340 44 RWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTN 123 (164)
Q Consensus 44 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 123 (164)
+.+|..+|++++|.|+.+|++.++..+ | ...+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g--------------------------------------------~~~~ 33 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----G--------------------------------------------LPRS 33 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----C--------------------------------------------CCHH
Confidence 568999999999999999999999873 2 1445
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 124 RVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 124 ~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.+..+|..+|.+++|.|+++||..++..
T Consensus 34 ~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 34 VLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 6788889999999999999999888764
No 36
>KOG0036|consensus
Probab=98.90 E-value=1.4e-08 Score=79.87 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=90.6
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
..+.++..+|+.+|.+++|.++..++...+..+ .....+......++...+.+.++.+++++|..++.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l----~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-------- 78 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL----DHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD-------- 78 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhc----CCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH--------
Confidence 345688899999999999999999999888873 33323333445789999999999999999999996
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc------ChHHHHHHhhhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN------DEDIKRSIQVFD 163 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~------~~~~~~~~~~~d 163 (164)
..+..+.++|...|.+.||.|+.+|+...++. ..+..+++...|
T Consensus 79 --~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d 128 (463)
T KOG0036|consen 79 --NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMD 128 (463)
T ss_pred --HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhc
Confidence 35678999999999999999999999999887 444555555444
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.83 E-value=2.5e-08 Score=63.48 Aligned_cols=72 Identities=22% Similarity=0.371 Sum_probs=54.8
Q ss_pred HHHHHHHhhhhccc--CCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhh
Q psy5340 39 VEEKLRWTFTLYDI--NGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVL 116 (164)
Q Consensus 39 ~~~~~~~~F~~~D~--~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 116 (164)
+...++.+|..||. +++|.|+.++|..+++.. +|..++.
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~---~g~~~~~------------------------------------ 46 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETE---LPNFLKN------------------------------------ 46 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHH---hhhhccC------------------------------------
Confidence 44578899999999 899999999999999862 1211110
Q ss_pred cccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 117 EDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 117 ~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
....+.+..++..+|.+++|.|++++|..++..
T Consensus 47 --~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 47 --QKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred --CCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 113556888888889888899999999888765
No 38
>KOG2643|consensus
Probab=98.78 E-value=2.4e-08 Score=79.08 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=94.3
Q ss_pred hhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccc-hhhhccchhhhh
Q psy5340 12 SLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFA-ETVLEDGSVTNR 90 (164)
Q Consensus 12 ~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~-~~~~~~~~~~~~ 90 (164)
..|-.+++++|++++|+.++.. .+++.++.-|..+|+..+|.|+..+|..+|-.. .+.+. .....+.++.+.
T Consensus 293 yFFG~rg~~kLs~deF~~F~e~----Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~---a~~n~~~k~~~lkrvk~k 365 (489)
T KOG2643|consen 293 YFFGKRGNGKLSIDEFLKFQEN----LQEEILELEFERFDKGDSGAISEVDFAELLLAY---AGVNSKKKHKYLKRVKEK 365 (489)
T ss_pred HhhccCCCccccHHHHHHHHHH----HHHHHHHHHHHHhCcccccccCHHHHHHHHHHH---cccchHhHHHHHHHHHHh
Confidence 3467889999999999998765 477788888999999999999999999988774 22222 222233344444
Q ss_pred hhhccchhhhHHHHHHHHHH----------------------------hhhhhhcccchHHHHHHHHHhcCCCCCCcccH
Q psy5340 91 VDSVFKMTNIVTAIYELMGK----------------------------FAETVLEDGSVTNRVDSVFKKMDKNQDGVVTL 142 (164)
Q Consensus 91 ~~~~~~~~~~~~~f~~~~~~----------------------------~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~ 142 (164)
...+ +..|+++||.+...= ....++...+.+..++-+|..||.|+||.+|.
T Consensus 366 f~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~ 444 (489)
T KOG2643|consen 366 FKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSH 444 (489)
T ss_pred ccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccH
Confidence 4444 667777777665321 11122223344457778999999999999999
Q ss_pred HHHHHHHhc
Q psy5340 143 DEFLECCLN 151 (164)
Q Consensus 143 ~E~~~~l~~ 151 (164)
+||..++++
T Consensus 445 ~EFl~Vmk~ 453 (489)
T KOG2643|consen 445 KEFLAVMKR 453 (489)
T ss_pred HHHHHHHHH
Confidence 999999986
No 39
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.72 E-value=6.2e-08 Score=56.38 Aligned_cols=61 Identities=34% Similarity=0.736 Sum_probs=51.4
Q ss_pred HHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchH
Q psy5340 43 LRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVT 122 (164)
Q Consensus 43 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 122 (164)
+..+|..+|.+++|.|+.+++..++..+ | .....
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~----~------------------------------------------~~~~~ 35 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL----G------------------------------------------EGLSE 35 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh----C------------------------------------------CCCCH
Confidence 4678999999999999999999999874 2 12255
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy5340 123 NRVDSVFKKMDKNQDGVVTLDEFLECC 149 (164)
Q Consensus 123 ~~~~~~f~~~D~d~~g~Is~~E~~~~l 149 (164)
+.+..+|..+|.+++|.|++++|..++
T Consensus 36 ~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 36 EEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 678889999999999999999998765
No 40
>KOG0377|consensus
Probab=98.72 E-value=1.5e-07 Score=74.84 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=91.3
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhcc-ccHHHHHHHhhhhcccCCCCcccHHHHHHHHH------HHHHHhcc
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSR-GSVEEKLRWTFTLYDINGDGRITREEMTNIVT------AIYELMGK 76 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~------~~~~~~g~ 76 (164)
+++.++-|+..|..++|.|+...|+.++..+.. +.+=..+ .-+....+.+|.+.+..-.+.+. +.+..+-.
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L--~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLL--RPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHh--hhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 467888899999999999999999887765432 1111111 11112223344444332222111 10000000
Q ss_pred c-chhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 77 F-AETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
. --....+..+++.+|+|++|.|+++||...+.-+..+.. ....+.++.++.+.+|.|+||.|++.||.+.++.
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~-~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMN-GAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcC-CCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 0 012233447788888888888888888888776554433 4567788999999999999999999999998764
No 41
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.70 E-value=1.1e-07 Score=60.60 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=51.5
Q ss_pred HHHHHhhhhccc-CC-CCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcc
Q psy5340 41 EKLRWTFTLYDI-NG-DGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLED 118 (164)
Q Consensus 41 ~~~~~~F~~~D~-~~-~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 118 (164)
..+-.+|+.||. ++ +|+|+.+||+.+++.... +|.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~-lg~------------------------------------------ 46 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELT-IGS------------------------------------------ 46 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHh-cCC------------------------------------------
Confidence 356689999997 67 899999999999974211 332
Q ss_pred cchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 119 GSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 119 ~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
...++.+..+++.+|.|++|.|+++||..++..
T Consensus 47 k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 47 KLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred CCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 235567888888888888888888888877764
No 42
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.68 E-value=9.5e-08 Score=55.58 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=55.1
Q ss_pred HHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHH
Q psy5340 7 WERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIV 67 (164)
Q Consensus 7 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 67 (164)
+.++|..+|.+++|.|++.+|..++..+........+..+|..+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999888777778889999999999999999999998764
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.65 E-value=1.4e-07 Score=56.58 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=54.0
Q ss_pred HHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHH
Q psy5340 8 ERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIY 71 (164)
Q Consensus 8 ~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 71 (164)
+++|..+|++++|.|+.+|+..++... +...+.+..+|..+|.+++|.|+.+||..++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~--g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS--GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 578999999999999999999988765 34667789999999999999999999999888653
No 44
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.65 E-value=9.8e-08 Score=55.05 Aligned_cols=31 Identities=29% Similarity=0.624 Sum_probs=27.6
Q ss_pred chHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy5340 120 SVTNRVDSVFKKMDKNQDGVVTLDEFLECCL 150 (164)
Q Consensus 120 ~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~ 150 (164)
..++.+..+|..+|.+++|.|+++||..++.
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 3566799999999999999999999999875
No 45
>KOG0030|consensus
Probab=98.63 E-value=1.5e-06 Score=58.99 Aligned_cols=139 Identities=10% Similarity=0.086 Sum_probs=110.3
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccC--CCCcccHHHHHHHHHHHHHHhcccchhh
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDIN--GDGRITREEMTNIVTAIYELMGKFAETV 81 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~--~~G~I~~~e~~~~l~~~~~~~g~~~~~~ 81 (164)
..++.++|..||..+||.|++.+--.++..+-.++.+.+...+-..++++ +--.|+.++|--++.++++. +.....
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn--k~q~t~ 87 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN--KDQGTY 87 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc--cccCcH
Confidence 46889999999999999999999999988888888888899998888877 55789999999998886542 222222
Q ss_pred hccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy5340 82 LEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCL 150 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~ 150 (164)
++--.-+..+|+.++|.|.-.+..+.+.... +...++.+..+..-.. |++|.|.++.|.+-+.
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlG-----ekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLG-----EKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHH-----hhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 2222347789999999999999999987665 5567777877777654 6789999999987654
No 46
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.63 E-value=2.2e-07 Score=59.40 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=54.6
Q ss_pred HHHHHHhhhh-cccCCCC-cccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 40 EEKLRWTFTL-YDINGDG-RITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 40 ~~~~~~~F~~-~D~~~~G-~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
...+..+|+. +|.+|+| .|+.+||+.++.........
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~----------------------------------------- 46 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK----------------------------------------- 46 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc-----------------------------------------
Confidence 3467889999 6788876 99999999999873211100
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
....+..+..+++.+|.|+||.|+++||..++..
T Consensus 47 ~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 47 NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 1224567889999999999999999999988865
No 47
>PLN02964 phosphatidylserine decarboxylase
Probab=98.60 E-value=1.3e-07 Score=79.62 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=59.1
Q ss_pred HHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 6 KWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 6 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
.++++|+.+|.+++|.|++.||+.++..+.....++++..+|+.||+|++|+|+.+||..++..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3899999999999999999999999987766677889999999999999999999999999887
No 48
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.55 E-value=5e-07 Score=58.45 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=58.6
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
...+.+.|..+|.+++|.|+..++..++... +...+.+..+|..+|.+++|.|+.+||..++..+..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 3578899999999999999999999988764 345678899999999999999999999999988655
No 49
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.54 E-value=3.7e-07 Score=58.25 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCc-CCCccccHHHHHHHhHH-hccccHH-HHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 5 DKWERTLSLLSF-AEIFPIFSQDFIQGLSV-LSRGSVE-EKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 5 ~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~-~~~~~~~-~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
..+-..|..||. +++|.|+..|+..++.. +...... ..+..+++.+|.|++|.|+++||..++..+..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 456788999999 99999999999999987 5432223 78999999999999999999999998887644
No 50
>KOG0751|consensus
Probab=98.54 E-value=4.9e-07 Score=72.91 Aligned_cols=134 Identities=17% Similarity=0.217 Sum_probs=100.9
Q ss_pred HHHHHHHhhc-CcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhc
Q psy5340 5 DKWERTLSLL-SFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83 (164)
Q Consensus 5 ~~~~~~~~~~-d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~ 83 (164)
++.-++.+.. |..+||-|+|+||+.+=..++ .+...+..+|..||..++|.+|.+++..+..+... ....| -.-+
T Consensus 73 ~~~v~Lla~iaD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l-~~~~~-f~~d 148 (694)
T KOG0751|consen 73 DKIVRLLASIADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL-HHHIP-FNWD 148 (694)
T ss_pred hHHHHHHHhhhhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhcccc-ccCCC-ccCC
Confidence 4555666644 567899999999999877776 56778889999999999999999999999887422 11111 1111
Q ss_pred cchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.+-+--++.......+.+.+|-+.+. ....+...++|...|+.++|.||.-+|..++.+
T Consensus 149 ~efI~~~Fg~~~~r~~ny~~f~Q~lh---------~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 149 SEFIKLHFGDIRKRHLNYAEFTQFLH---------EFQLEHAEQAFREKDKAKNGFISVLDFQDIMVT 207 (694)
T ss_pred cchHHHHhhhHHHHhccHHHHHHHHH---------HHHHHHHHHHHHHhcccCCCeeeeechHhhhhh
Confidence 12333356666777888899888885 345667999999999999999999999888776
No 51
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.53 E-value=4.7e-07 Score=57.56 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=57.1
Q ss_pred hHHHHHHHhhcCc--CCCccccHHHHHHHhHHhcc-----ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 4 HDKWERTLSLLSF--AEIFPIFSQDFIQGLSVLSR-----GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 4 ~~~~~~~~~~~d~--~~~g~i~~~ef~~~l~~~~~-----~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
...+.+.|..+|+ +++|.|+..++..++..... ......+..++..+|.+++|.|+.++|..++.....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 4567888999999 89999999999998865221 123678999999999999999999999998887543
No 52
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.52 E-value=5.3e-07 Score=57.88 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=57.6
Q ss_pred hHHHHHHHhhcC-cCCCc-cccHHHHHHHhHH-hc----cccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 4 HDKWERTLSLLS-FAEIF-PIFSQDFIQGLSV-LS----RGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 4 ~~~~~~~~~~~d-~~~~g-~i~~~ef~~~l~~-~~----~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
.+.+.+.|..|| .+++| .|+..|+..++.. +. .....+.+..+|+.+|++++|.|+.++|..++..++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 467889999997 99999 5999999999864 21 1235678999999999999999999999999887644
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.52 E-value=3.5e-07 Score=52.67 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=45.1
Q ss_pred CCccccHHHHHHHhHHhccc-cHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 18 EIFPIFSQDFIQGLSVLSRG-SVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 18 ~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
++|.|+.++|..++..+... .....+..+|..+|.+++|.|+++||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36899999999999766545 56677999999999999999999999998864
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.51 E-value=9.5e-08 Score=48.02 Aligned_cols=27 Identities=33% Similarity=0.641 Sum_probs=19.5
Q ss_pred HHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 43 LRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 43 ~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
++.+|+.||+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777777777777777777664
No 55
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.51 E-value=5.2e-07 Score=58.10 Aligned_cols=68 Identities=16% Similarity=0.029 Sum_probs=55.9
Q ss_pred HHHHHHHhhcC-cCCCc-cccHHHHHHHhHHh-----ccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 5 DKWERTLSLLS-FAEIF-PIFSQDFIQGLSVL-----SRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 5 ~~~~~~~~~~d-~~~~g-~i~~~ef~~~l~~~-----~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
..+.++|..|| .+++| .|+..|+..++... ........+..+++.+|.|++|.|+.+||..++..++.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 45677799999 68998 59999999988652 22235568999999999999999999999999987643
No 56
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.51 E-value=7e-07 Score=56.91 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=58.5
Q ss_pred hHHHHHHHhhcC-cCCCc-cccHHHHHHHhHH-----hccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 4 HDKWERTLSLLS-FAEIF-PIFSQDFIQGLSV-----LSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 4 ~~~~~~~~~~~d-~~~~g-~i~~~ef~~~l~~-----~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
-..+.+.|..|| .+++| .|+..++..++.. +.....+..+..+++.+|+|++|.|+.+||..++..++.
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 356788999998 79999 5999999999987 444456677999999999999999999999988887543
No 57
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.50 E-value=5.3e-07 Score=58.12 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=56.9
Q ss_pred chHHHHHHHhhcCc-CC-CccccHHHHHHHhHH-h----ccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHH
Q psy5340 3 THDKWERTLSLLSF-AE-IFPIFSQDFIQGLSV-L----SRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIY 71 (164)
Q Consensus 3 ~~~~~~~~~~~~d~-~~-~g~i~~~ef~~~l~~-~----~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 71 (164)
+...+.+.|..+|. ++ +|.|+..|+..++.. + .....++.+..+++.+|.+++|.|+.++|..++..++
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34678889999997 87 699999999998864 2 2234567899999999999999999999999888753
No 58
>KOG4666|consensus
Probab=98.48 E-value=3.4e-07 Score=70.26 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=90.7
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhcc-ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhc
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSR-GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~ 83 (164)
+....+|..||.+++|.++|.|....+++++. ......++.+|++|+...+|.+...+|..+++.. +|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~---lg-------- 327 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV---LG-------- 327 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh---cC--------
Confidence 45678999999999999999999999999985 5667889999999999999999999999888863 22
Q ss_pred cchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHH
Q psy5340 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSI 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~ 159 (164)
+.+-.+-.+|...+...+|+|+.++|++.+...|.+..++
T Consensus 328 ------------------------------------v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~~ 367 (412)
T KOG4666|consen 328 ------------------------------------VEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEPNLALSE 367 (412)
T ss_pred ------------------------------------cceeeccccchhhhcccCcceeHHHHHHHHHhCchhhhhh
Confidence 2233466788888888999999999999999888876553
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.48 E-value=1.9e-07 Score=46.89 Aligned_cols=27 Identities=30% Similarity=0.625 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 125 VDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 125 ~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
++.+|+.+|+|+||+|+++||+.++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 678999999999999999999999864
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.44 E-value=8.5e-07 Score=59.35 Aligned_cols=60 Identities=15% Similarity=0.054 Sum_probs=51.3
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHH
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVT 68 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 68 (164)
..+.-.|..+|.+++|.|+..|+..+. ....+..+...|..+|.|++|.||.+||..++.
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 456778999999999999999998765 224566778899999999999999999999883
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.43 E-value=1.4e-06 Score=55.53 Aligned_cols=70 Identities=23% Similarity=0.487 Sum_probs=53.6
Q ss_pred HHHHHhhhhcccC--CCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcc
Q psy5340 41 EKLRWTFTLYDIN--GDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLED 118 (164)
Q Consensus 41 ~~~~~~F~~~D~~--~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 118 (164)
..+-.+|+.|+.. ++|.|+.+||+.++... +|..+. .
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~---~g~~~t--------------------------------------~ 46 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKE---LPNFLK--------------------------------------K 46 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHH---hhHhhc--------------------------------------c
Confidence 4667889999865 58999999999999742 221110 0
Q ss_pred cchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 119 GSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 119 ~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
...+..+..+|..+|.+++|.|+++||..++..
T Consensus 47 ~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 47 EKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 123678999999999999999999999998875
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.40 E-value=5.6e-07 Score=53.70 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=54.4
Q ss_pred HhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccc-hhhhHHHHHHHHHHh
Q psy5340 45 WTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFK-MTNIVTAIYELMGKF 111 (164)
Q Consensus 45 ~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~ 111 (164)
.+|..||+++.|.|....+..+|++ +|.....+.++..+.+++|+++. +.++|+.|...|..|
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra----~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRA----VTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHH----HcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4799999999999999999999998 56644455577799999999988 999999999999644
No 63
>KOG0041|consensus
Probab=98.35 E-value=2.4e-06 Score=61.55 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=50.9
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHh
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKF 111 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 111 (164)
.+...+..+|+.||.+.+|+|+..|++.+|..++. |-+.+.+.+|+.+++.|.+|.++|-+|+-.+...
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-----pQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGA-----PQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCC-----chhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 46678899999999999999999999999998532 2233445566777777777777766666665543
No 64
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.33 E-value=3.2e-06 Score=53.96 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=54.7
Q ss_pred HHHHHHHhh-cCcCCCc-cccHHHHHHHhHHhcc-----ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 5 DKWERTLSL-LSFAEIF-PIFSQDFIQGLSVLSR-----GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 5 ~~~~~~~~~-~d~~~~g-~i~~~ef~~~l~~~~~-----~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
..+..+|.. ++.+++| .|+..||..++....+ ......+..+++.+|.|++|.|+.+||..++..++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 456677777 6677766 9999999999877532 234568899999999999999999999999887643
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.30 E-value=4.9e-07 Score=46.11 Aligned_cols=27 Identities=41% Similarity=0.717 Sum_probs=23.7
Q ss_pred HHHHhhhhcccCCCCcccHHHHHHHHH
Q psy5340 42 KLRWTFTLYDINGDGRITREEMTNIVT 68 (164)
Q Consensus 42 ~~~~~F~~~D~~~~G~I~~~e~~~~l~ 68 (164)
+++.+|+.||.+++|+|+.+||+.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999998
No 66
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.29 E-value=2.5e-07 Score=61.68 Aligned_cols=64 Identities=27% Similarity=0.552 Sum_probs=47.7
Q ss_pred ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhh
Q psy5340 37 GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVL 116 (164)
Q Consensus 37 ~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 116 (164)
......+.+.|..+|.|+||.++..|+..+...+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---------------------------------------------- 83 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---------------------------------------------- 83 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT----------------------------------------------
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH----------------------------------------------
Confidence 4566788999999999999999999998665532
Q ss_pred cccchHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy5340 117 EDGSVTNRVDSVFKKMDKNQDGVVTLDEFLEC 148 (164)
Q Consensus 117 ~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~ 148 (164)
.-.+.+++..|..+|.|+||.||..||..+
T Consensus 84 --~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 84 --MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp --STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred --hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 114568899999999999999999999864
No 67
>KOG4251|consensus
Probab=98.24 E-value=6.7e-06 Score=61.14 Aligned_cols=141 Identities=14% Similarity=0.132 Sum_probs=91.9
Q ss_pred chHHHHHHHhhcCcCCCccccHHHHHHHhHHhcc---ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccch
Q psy5340 3 THDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSR---GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAE 79 (164)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~---~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~ 79 (164)
++..+..||+..|.+.+|.|+-.|..+.+-.-.- +...+.-+--|+..|+|++|.|+++|++--..+. -|..-.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas---kghsek 175 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS---KGHSEK 175 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh---cCcchH
Confidence 4567889999999999999999998886543221 1233455567999999999999999998654432 222111
Q ss_pred h---------hh---ccchhhhhhhhccchhhhH---------HHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCC
Q psy5340 80 T---------VL---EDGSVTNRVDSVFKMTNIV---------TAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDG 138 (164)
Q Consensus 80 ~---------~~---~~~~~~~~~~~~~~~~~~~---------~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g 138 (164)
. +. +..+++.+-..+..+..+- ++|...+.. ....+.....+..+...+|.|||.
T Consensus 176 evadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHP----EhSrgmLrfmVkeivrdlDqdgDk 251 (362)
T KOG4251|consen 176 EVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHP----EHSRGMLRFMVKEIVRDLDQDGDK 251 (362)
T ss_pred HHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcCh----HhhhhhHHHHHHHHHHHhccCCCe
Confidence 0 00 1113344444444444432 666655431 111233456788999999999999
Q ss_pred cccHHHHHHHHh
Q psy5340 139 VVTLDEFLECCL 150 (164)
Q Consensus 139 ~Is~~E~~~~l~ 150 (164)
.+|..||.....
T Consensus 252 qlSvpeFislpv 263 (362)
T KOG4251|consen 252 QLSVPEFISLPV 263 (362)
T ss_pred eecchhhhcCCC
Confidence 999999987643
No 68
>KOG2562|consensus
Probab=98.24 E-value=6.8e-06 Score=65.89 Aligned_cols=108 Identities=14% Similarity=0.180 Sum_probs=80.4
Q ss_pred hHHHHHHHh----hcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccch
Q psy5340 4 HDKWERTLS----LLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAE 79 (164)
Q Consensus 4 ~~~~~~~~~----~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~ 79 (164)
.-.++|||+ .+-...+|.++|++|+-++..+........++..|+.+|.+++|.|+..|++-+.+.....|-....
T Consensus 310 ~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~ 389 (493)
T KOG2562|consen 310 ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQ 389 (493)
T ss_pred hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCC
Confidence 346789998 4444578899999999988777666666789999999999999999999999988875443311111
Q ss_pred hhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy5340 80 TVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLEC 148 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~ 148 (164)
. ....+..+.+++...-+...++||+++|+..
T Consensus 390 e-------------------------------------~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 390 E-------------------------------------ALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred C-------------------------------------cccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 1 1224566777777777777888999988873
No 69
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.23 E-value=6.7e-06 Score=52.36 Aligned_cols=67 Identities=9% Similarity=0.011 Sum_probs=54.7
Q ss_pred HHHHHHhhcCc-CC-CccccHHHHHHHhHH---hccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 6 KWERTLSLLSF-AE-IFPIFSQDFIQGLSV---LSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 6 ~~~~~~~~~d~-~~-~g~i~~~ef~~~l~~---~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
.+-.+|..++. ++ +|.|+.+||..++.. +......+.+..+++.+|.|++|.|+++||...+..++.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 45567888886 66 889999999999963 233356678999999999999999999999988887543
No 70
>KOG2562|consensus
Probab=98.21 E-value=7.3e-06 Score=65.71 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=94.2
Q ss_pred HHHHHHhhcCcCCCccccHHHHHH-----HhHHhcccc------------HHHHHHHhhhhcccCCCCcccHHHHHHHHH
Q psy5340 6 KWERTLSLLSFAEIFPIFSQDFIQ-----GLSVLSRGS------------VEEKLRWTFTLYDINGDGRITREEMTNIVT 68 (164)
Q Consensus 6 ~~~~~~~~~d~~~~g~i~~~ef~~-----~l~~~~~~~------------~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 68 (164)
-+.|||-.+++.+.|.|+.++... .+..+.... +-..+..-|-.+|.+++|.|+++++...-.
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 468999999999999999999643 333322211 111223347778999999999999987554
Q ss_pred HHHHHhcccchhhhccchhhhhhhhc----cchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHH
Q psy5340 69 AIYELMGKFAETVLEDGSVTNRVDSV----FKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144 (164)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E 144 (164)
..+ +..-+.+++.++.+. .+|.+++.+|+-.+.+.. ....+..++..|+.+|.+++|.|+..|
T Consensus 306 ~tl--------t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-----~k~t~~SleYwFrclDld~~G~Lt~~e 372 (493)
T KOG2562|consen 306 HTL--------TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-----DKDTPASLEYWFRCLDLDGDGILTLNE 372 (493)
T ss_pred cch--------hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-----cCCCccchhhheeeeeccCCCcccHHH
Confidence 321 111122444422222 778899999999998765 555677899999999999999999999
Q ss_pred HHHHHhc
Q psy5340 145 FLECCLN 151 (164)
Q Consensus 145 ~~~~l~~ 151 (164)
+.-.+..
T Consensus 373 l~~fyee 379 (493)
T KOG2562|consen 373 LRYFYEE 379 (493)
T ss_pred HHHHHHH
Confidence 9877765
No 71
>PF14658 EF-hand_9: EF-hand domain
Probab=98.19 E-value=4.9e-06 Score=49.67 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=55.9
Q ss_pred HHHhhcCcCCCccccHHHHHHHhHHhcc-ccHHHHHHHhhhhcccCCC-CcccHHHHHHHHHH
Q psy5340 9 RTLSLLSFAEIFPIFSQDFIQGLSVLSR-GSVEEKLRWTFTLYDINGD-GRITREEMTNIVTA 69 (164)
Q Consensus 9 ~~~~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~F~~~D~~~~-G~I~~~e~~~~l~~ 69 (164)
..|..+|+++.|.|....++.++..... ...+.+++.+.+.+|+++. |.|+.+.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4689999999999999999999988776 7788899999999999998 99999999999875
No 72
>KOG0040|consensus
Probab=98.16 E-value=7.8e-06 Score=73.22 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=85.3
Q ss_pred HHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccc------hhhhccchhhhhhhhccchhhhHHHHHHHHHHhh
Q psy5340 39 VEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFA------ETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFA 112 (164)
Q Consensus 39 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 112 (164)
+--++..+|..||++.+|.++..+|+-||+.+ |+.. .++.+...++..+||+.+|.|++.+|++.|.+
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl----gY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~-- 2324 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSL----GYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS-- 2324 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhc----CCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh--
Confidence 33578899999999999999999999999994 5543 22335568899999999999999999999984
Q ss_pred hhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 113 ETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 113 ~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
+.++.....+.++.+|+.+|. +..+|+..+..+.+..
T Consensus 2325 -~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~ltr 2361 (2399)
T KOG0040|consen 2325 -KETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLTR 2361 (2399)
T ss_pred -cccccccchHHHHHHHHHhhc-CCccccHHHHHhcCCH
Confidence 334444556699999999999 8889999988766654
No 73
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.09 E-value=4.7e-06 Score=40.29 Aligned_cols=25 Identities=24% Similarity=0.631 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHH
Q psy5340 125 VDSVFKKMDKNQDGVVTLDEFLECC 149 (164)
Q Consensus 125 ~~~~f~~~D~d~~g~Is~~E~~~~l 149 (164)
++.+|+.+|.|+||.||.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999999864
No 74
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.07 E-value=4.7e-05 Score=48.52 Aligned_cols=67 Identities=19% Similarity=0.396 Sum_probs=49.1
Q ss_pred HHHHhhhhcccCCCCcccHHHHHHHHHHH-HHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccc
Q psy5340 42 KLRWTFTLYDINGDGRITREEMTNIVTAI-YELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGS 120 (164)
Q Consensus 42 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 120 (164)
.+-.+|+.|. .+.|.+++.||+..+..= ...++ ...
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~------------------------------------------~~~ 45 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLK------------------------------------------NQN 45 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHc------------------------------------------CCC
Confidence 4567888888 456799999999999852 11111 122
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.+..++.+++..|.|+||.|++.||..++..
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4667888888888888888888888888765
No 75
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.99 E-value=4.1e-05 Score=48.71 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCcC--CCccccHHHHHHHhHHhc-cccH----HHHHHHhhhhcccCCCCcccHHHHHHHHHHHH
Q psy5340 5 DKWERTLSLLSFA--EIFPIFSQDFIQGLSVLS-RGSV----EEKLRWTFTLYDINGDGRITREEMTNIVTAIY 71 (164)
Q Consensus 5 ~~~~~~~~~~d~~--~~g~i~~~ef~~~l~~~~-~~~~----~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 71 (164)
..+-++|..++.. .+|.|+.+|+..++.... .... ...+..+|+.+|.+++|.|+.+||..++..++
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3456777878754 478999999999986322 2122 67899999999999999999999999888754
No 76
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.97 E-value=7.3e-06 Score=39.61 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=16.6
Q ss_pred HHhhhhcccCCCCcccHHHHHHH
Q psy5340 44 RWTFTLYDINGDGRITREEMTNI 66 (164)
Q Consensus 44 ~~~F~~~D~~~~G~I~~~e~~~~ 66 (164)
+.+|+.+|.|++|.|+.+|++++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777764
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.97 E-value=1.1e-05 Score=41.02 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHh
Q psy5340 125 VDSVFKKMDKNQDGVVTLDEFLECCL 150 (164)
Q Consensus 125 ~~~~f~~~D~d~~g~Is~~E~~~~l~ 150 (164)
++.+|+.+|.|++|+|+.+||..+++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 67899999999999999999999987
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.94 E-value=6.1e-05 Score=49.42 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=51.1
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.....+..+|...|+ ++|.|+.++.+.++..
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~------------------------------------------------ 37 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMK------------------------------------------------ 37 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH------------------------------------------------
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH------------------------------------------------
Confidence 455678888998885 6799999988887775
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
-.+..+.+..+|...|.+++|.++.+||.-++.-
T Consensus 38 S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 38 SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 2346678889999999999999999999877654
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.90 E-value=3.5e-05 Score=61.83 Aligned_cols=55 Identities=24% Similarity=0.240 Sum_probs=48.8
Q ss_pred chHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 3 THDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
.+..+..+|+.+|.+++|.|+..||.. ...+|..+|.|++|.|+.+||..++...
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 356788999999999999999999953 4678999999999999999999998874
No 80
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.87 E-value=3.8e-05 Score=61.61 Aligned_cols=55 Identities=38% Similarity=0.559 Sum_probs=42.1
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
..+..+..+|+.+|.+++|.|+.+||..
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------------------------------------- 358 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG---------------------------------------------------- 358 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH----------------------------------------------------
Confidence 4456777788888888888888887731
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
+..+|..+|.|++|.|+++||.+.+..
T Consensus 359 -------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 359 -------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred -------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 235688999999999999999888764
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.84 E-value=7.1e-05 Score=42.26 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=40.3
Q ss_pred ccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 22 i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
++|+|...++..+.-...+..+..+|+.+|.+++|.+..+||..+.+.+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6899999999988877888899999999999999999999999988764
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.68 E-value=0.00012 Score=41.30 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy5340 120 SVTNRVDSVFKKMDKNQDGVVTLDEFLECCL 150 (164)
Q Consensus 120 ~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~ 150 (164)
..+..+..+|+.+|++++|.+..+||.+.++
T Consensus 18 ~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 18 MDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp --HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 3678899999999999999999999998875
No 83
>KOG0377|consensus
Probab=97.67 E-value=0.00012 Score=58.76 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=57.8
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhcc----ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSR----GSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~----~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
+...+-||+..|.+.+|.|+.+||..+|..+.. ....+.+..+-+..|.|++|+|+..||..+.+.
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 356788999999999999999999999988764 345678889999999999999999999988775
No 84
>KOG4065|consensus
Probab=97.62 E-value=0.00024 Score=46.95 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHh--cccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhh
Q psy5340 39 VEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM--GKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVL 116 (164)
Q Consensus 39 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 116 (164)
+++.--..|++.|.|+||.|+.-|+..+++..-... |..|.+-..
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~s--------------------------------- 111 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSS--------------------------------- 111 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCC---------------------------------
Confidence 344444689999999999999999999999764422 222222110
Q ss_pred cccchHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy5340 117 EDGSVTNRVDSVFKKMDKNQDGVVTLDEFLEC 148 (164)
Q Consensus 117 ~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~ 148 (164)
+...+..+..+.+.-|.|+||+|++.||.+.
T Consensus 112 -E~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 112 -EAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred -HHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 2235677888899999999999999999874
No 85
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.44 E-value=0.0011 Score=43.46 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=54.9
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHh
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~ 74 (164)
...+.++|..+++ ++|.|+-.+-..++.. .+.+.+.+..+|.+.|.+++|+++.+||..++..+...+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~--S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~ 76 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMK--SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKL 76 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHH--TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHH--cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHh
Confidence 3578899999885 5799999998776543 356778999999999999999999999999999765433
No 86
>KOG0041|consensus
Probab=97.39 E-value=0.00054 Score=49.63 Aligned_cols=66 Identities=14% Similarity=-0.007 Sum_probs=58.0
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
..+++.+|..+|.+.||.|++.|+...+..+--....--++.+-...|.|++|+||..||--+.+.
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 467889999999999999999999999888865555667889999999999999999999887775
No 87
>KOG4578|consensus
Probab=97.32 E-value=0.00015 Score=56.12 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=56.0
Q ss_pred HHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhccc
Q psy5340 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDG 119 (164)
Q Consensus 40 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 119 (164)
+..+.+.|..+|.|+++.|.+.|++.+=..+.+ ..
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k---------------------------------------------~s 366 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLK---------------------------------------------KS 366 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHh---------------------------------------------hc
Confidence 447889999999999999999998765554322 12
Q ss_pred chHHHHHHHHHhcCCCCCCcccHHHHHHHHhcC
Q psy5340 120 SVTNRVDSVFKKMDKNQDGVVTLDEFLECCLND 152 (164)
Q Consensus 120 ~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~ 152 (164)
-..+..+.+|+-+|.|+|.+||++||+.++...
T Consensus 367 ~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 367 KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 356789999999999999999999999999763
No 88
>KOG0038|consensus
Probab=97.30 E-value=0.00032 Score=48.34 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=53.4
Q ss_pred hhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 86 SVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.+.+.+..++.|.++|++|+.++..+..+ +-.+-.+..+|+.||-|+|+.|...++.+.++.
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~----APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEM----APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhh----ChHHhhhhheeEEeecCCCCcccHHHHHHHHHH
Confidence 77888999999999999999999876622 234567889999999999999999999998876
No 89
>KOG4251|consensus
Probab=97.10 E-value=0.0021 Score=48.15 Aligned_cols=98 Identities=22% Similarity=0.187 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccc---------cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhc
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRG---------SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMG 75 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~---------~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g 75 (164)
..++.|...+|.+++..+|..+|+.+..-.... -.+++.+..=..+|.|++|.+|.+|+...+.-....+
T Consensus 236 fmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~- 314 (362)
T KOG4251|consen 236 FMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRL- 314 (362)
T ss_pred HHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhh-
Confidence 467888889999999999999998743221110 1123344444567888888888888887754322211
Q ss_pred ccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy5340 76 KFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLEC 148 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~ 148 (164)
....+..+...-|.+++..++.+|+.+.
T Consensus 315 ---------------------------------------------alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 315 ---------------------------------------------ALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred ---------------------------------------------hHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 2345666777778888888888887654
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.04 E-value=0.00045 Score=46.03 Aligned_cols=59 Identities=20% Similarity=0.102 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHH
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTN 65 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~ 65 (164)
..+.-.|..+|.+++|.|+-.|+..+...+. ..+.=+...|+.+|.|++|.||..|...
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~--~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPLM--PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTTS--TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHHh--hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3456679999999999999999888766553 3333467788999999999999999865
No 91
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.03 E-value=0.0011 Score=31.67 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 125 VDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 125 ~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
++.+|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998864
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.95 E-value=0.0009 Score=31.96 Aligned_cols=27 Identities=41% Similarity=0.781 Sum_probs=19.3
Q ss_pred HHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 43 LRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 43 ~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777777777777777777776653
No 93
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.89 E-value=0.0072 Score=38.57 Aligned_cols=66 Identities=11% Similarity=0.034 Sum_probs=50.5
Q ss_pred HHHHHHhhcCcCCCccccHHHHHHHhHHhcc-----ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 6 KWERTLSLLSFAEIFPIFSQDFIQGLSVLSR-----GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 6 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~-----~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
.+-.+|..+. ...++++-.||..++..-.+ ......+..+++..|.|++|.|+.+||...+..++.
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3445666666 33568999999998855332 234568889999999999999999999999887643
No 94
>KOG0040|consensus
Probab=96.88 E-value=0.0067 Score=55.45 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=73.4
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhcc-------ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhccc
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSR-------GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKF 77 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~-------~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~ 77 (164)
.++.-+|..||.+.+|.+++++|..++..+.. +.++..++.+....||+.+|+|+..+.-.+|-.- =.-+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~---ETeN 2329 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK---ETEN 2329 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc---cccc
Confidence 46788999999999999999999998876543 3556699999999999999999999988776541 1111
Q ss_pred chhhhccchhhhhhhhccchhhhHHHHHHHHH
Q psy5340 78 AETVLEDGSVTNRVDSVFKMTNIVTAIYELMG 109 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 109 (164)
.-...+++..+..++. +...|..++.++.+.
T Consensus 2330 I~s~~eIE~AfraL~a-~~~yvtke~~~~~lt 2360 (2399)
T KOG0040|consen 2330 ILSSEEIEDAFRALDA-GKPYVTKEELYQNLT 2360 (2399)
T ss_pred ccchHHHHHHHHHhhc-CCccccHHHHHhcCC
Confidence 1111233455666666 566677777666663
No 95
>KOG3555|consensus
Probab=96.82 E-value=0.0018 Score=50.61 Aligned_cols=64 Identities=22% Similarity=0.403 Sum_probs=55.3
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.....+.+.|..+|.|.+|.++..|++.+-..
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld------------------------------------------------ 278 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELD------------------------------------------------ 278 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhcc------------------------------------------------
Confidence 45678889999999999999999998865442
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
..+..++.+|..+|...||.||-.||..++..
T Consensus 279 --knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 279 --KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred --CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 36889999999999999999999999999876
No 96
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.82 E-value=0.014 Score=37.15 Aligned_cols=82 Identities=17% Similarity=0.368 Sum_probs=52.7
Q ss_pred HHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH---HhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhh
Q psy5340 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYE---LMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVL 116 (164)
Q Consensus 40 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 116 (164)
.++++.+|+.+ .|++|.++..-|...|..+.. .+|..+.-
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aF------------------------------------ 44 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAF------------------------------------ 44 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGG------------------------------------
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccc------------------------------------
Confidence 46889999999 488999999999999987532 22322211
Q ss_pred cccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHhhh
Q psy5340 117 EDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQVF 162 (164)
Q Consensus 117 ~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~~~ 162 (164)
+..+..++..|..- ..+..|+.++|..++...|.+..++..+
T Consensus 45 --g~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~lVWLP~l 86 (90)
T PF09069_consen 45 --GYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQSLVWLPTL 86 (90)
T ss_dssp --T--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TTTTHHHHH
T ss_pred --cCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCeeeHHHHH
Confidence 22566788888876 2456799999999999999887777653
No 97
>KOG0751|consensus
Probab=96.68 E-value=0.017 Score=47.37 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=75.2
Q ss_pred HHHHHHHhhh---hcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhh
Q psy5340 39 VEEKLRWTFT---LYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETV 115 (164)
Q Consensus 39 ~~~~~~~~F~---~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 115 (164)
+..+++.+|- ..+.++.-+.+.++|....-.+ .+.+..++..++.+....|..-||-++++||.+.-.-.+
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL---~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC--- 104 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGL---YNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC--- 104 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhh---cccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---
Confidence 3345555554 4467888899999998655443 344444444444455557777899999999998876444
Q ss_pred hcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 116 LEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 116 ~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.++..-..+|..||+.++|.+|.+++..++..
T Consensus 105 ----~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 105 ----APDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred ----CchHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 35667788999999999999999999999875
No 98
>KOG4347|consensus
Probab=96.56 E-value=0.0031 Score=52.97 Aligned_cols=60 Identities=32% Similarity=0.392 Sum_probs=55.7
Q ss_pred chHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHH
Q psy5340 3 THDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEM 63 (164)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~ 63 (164)
+.....++|.++|.+.+|.|+|.+++..+..+..+...++++.+|+++|++++ ..+.++.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44578999999999999999999999999999999999999999999999999 8888877
No 99
>KOG0169|consensus
Probab=96.18 E-value=0.05 Score=46.76 Aligned_cols=95 Identities=11% Similarity=0.146 Sum_probs=45.2
Q ss_pred HHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchH
Q psy5340 43 LRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVT 122 (164)
Q Consensus 43 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 122 (164)
+..+|+..|++++|.++..+...++..+.-.++.. ....+..+.+..+++.+...+|........ ..+
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~-----~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~-------~rp 205 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSES-----KARRLFKESDNSQTGKLEEEEFVKFRKELT-------KRP 205 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHhhhHH-----HHHHHHHHHHhhccceehHHHHHHHHHhhc-------cCc
Confidence 34445555555555555555555555443322211 111333334444555555554444433111 122
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 123 NRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 123 ~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.+..+|..+-.+ .+.++.+++...+..
T Consensus 206 -ev~~~f~~~s~~-~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 206 -EVYFLFVQYSHG-KEYLSTDDLLRFLEE 232 (746)
T ss_pred -hHHHHHHHHhCC-CCccCHHHHHHHHHH
Confidence 556666666544 566666666666654
No 100
>KOG0046|consensus
Probab=96.05 E-value=0.019 Score=47.40 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=47.0
Q ss_pred HHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHH
Q psy5340 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMG 109 (164)
Q Consensus 40 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 109 (164)
...++..|...| +++|+|+..++..++.......|... ..+.+.++...+.+.+|.++|++|+..+.
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~--~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFV--REEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchh--HHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 346788999999 99999999999999988544333322 22333666666677777777777777554
No 101
>KOG1955|consensus
Probab=95.92 E-value=0.02 Score=47.00 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=55.7
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
++.+++...|+.+-+|-+|+|+..--+++.+.
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtK------------------------------------------------ 259 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTK------------------------------------------------ 259 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhh------------------------------------------------
Confidence 67788889999999999999998877777765
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
-.+.-..+..||++.|.+.||-+++.||+..+..
T Consensus 260 Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 260 SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 1235567889999999999999999999988754
No 102
>KOG4286|consensus
Probab=95.67 E-value=0.049 Score=46.80 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=81.1
Q ss_pred HHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHH---HHhcccchhhhcc
Q psy5340 8 ERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIY---ELMGKFAETVLED 84 (164)
Q Consensus 8 ~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~---~~~g~~~~~~~~~ 84 (164)
+=+++.||+..+|.|...+|...+..+++...++++..+|......++-++ ...|...|..+. ..+|...
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~a------ 545 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVA------ 545 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHH------
Confidence 457899999999999999999999999999999999999999986666665 555555544321 1122110
Q ss_pred chhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHhh
Q psy5340 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQV 161 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~~ 161 (164)
++. ..-.+-.++.-|. -.++.-.|+...|..++...|....++.+
T Consensus 546 -------------------------AfG-----gsNvepsvrsCF~--~v~~~pei~~~~f~dw~~~epqsmVwL~v 590 (966)
T KOG4286|consen 546 -------------------------AFG-----GSNIEPSVRSCFQ--FVNNKPEIEAALFLDWMRLEPQSMVWLPV 590 (966)
T ss_pred -------------------------hhc-----CCCCChHHHHHHH--hcCCCCcchHHHHHHHhccCcchhhHHHH
Confidence 000 0012345666676 34566779999999999998887766554
No 103
>KOG1029|consensus
Probab=95.58 E-value=0.021 Score=49.15 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=54.9
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
...-++..+|+..|+..+|++|...-+.+|.+
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q------------------------------------------------ 223 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQ------------------------------------------------ 223 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHh------------------------------------------------
Confidence 45568889999999999999999988888776
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCL 150 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~ 150 (164)
..+...++..++.+-|.|+||+++.+||.-.+.
T Consensus 224 S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 224 SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred cCCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 234677888999999999999999999986553
No 104
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.43 E-value=0.25 Score=35.22 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=27.0
Q ss_pred HHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 40 EEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 40 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
.+++..+|..++..+.+.+|..|+..+++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 468999999999989999999999988885
No 105
>KOG4666|consensus
Probab=95.33 E-value=0.01 Score=46.16 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccch
Q psy5340 18 EIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKM 97 (164)
Q Consensus 18 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
+.+.|.-.||...+.+ ...+.+...|.+||.+++|.++..|....+.-+ + +
T Consensus 240 kg~~igi~efa~~l~v----pvsd~l~~~f~LFde~~tg~~D~re~v~~lavl----c-~-------------------- 290 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLRV----PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVL----C-G-------------------- 290 (412)
T ss_pred cCCCcceeEeeeeeec----chhhhhhhhhheecCCCCCcccHHHHhhhheee----e-C--------------------
Confidence 3455666666554444 233677888999999999999877665554432 1 1
Q ss_pred hhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 98 TNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 98 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
....+..++.+|+.|+..-||.+.-.++-.+++.
T Consensus 291 --------------------p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 291 --------------------PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred --------------------CCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 2336778999999999999999999988888775
No 106
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.94 E-value=0.015 Score=41.32 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhcCh
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDE 153 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~ 153 (164)
.++..+++|..+++.+.+.+|..|+.++++.+.
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 478999999999999899999999999998743
No 107
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.19 E-value=0.11 Score=32.16 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=44.1
Q ss_pred HHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchH
Q psy5340 43 LRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVT 122 (164)
Q Consensus 43 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 122 (164)
+..+|..+.. +.+.||.++|...|..- -| . .....
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~e---Q~-~----------------------------------------~~~~~ 36 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREE---QG-E----------------------------------------PRLTD 36 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHT---SS------------------------------------------TTSSH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHH---hc-c----------------------------------------ccCcH
Confidence 5678888855 78899999999988751 01 0 12245
Q ss_pred HHHHHHHHhcCCC----CCCcccHHHHHHHHhc
Q psy5340 123 NRVDSVFKKMDKN----QDGVVTLDEFLECCLN 151 (164)
Q Consensus 123 ~~~~~~f~~~D~d----~~g~Is~~E~~~~l~~ 151 (164)
..+..++..|..+ ..+.+|++.|..+|..
T Consensus 37 ~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 37 EQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5666667666544 3688899999888865
No 108
>KOG3866|consensus
Probab=93.83 E-value=0.14 Score=39.80 Aligned_cols=98 Identities=23% Similarity=0.251 Sum_probs=53.8
Q ss_pred HHHHHHHhHHhccccH-HHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHH
Q psy5340 24 SQDFIQGLSVLSRGSV-EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVT 102 (164)
Q Consensus 24 ~~ef~~~l~~~~~~~~-~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (164)
-+++..+|.....-.+ .-.=+-.|.+.|.|++|+++-.|+....+.-...+ +.+.++.+
T Consensus 226 kdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKv-YdpkNeeD------------------- 285 (442)
T KOG3866|consen 226 KDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKV-YDPKNEED------------------- 285 (442)
T ss_pred HHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHh-cCCCCcch-------------------
Confidence 3445555554432111 11224678889999999999999998877543322 23322221
Q ss_pred HHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 103 AIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 103 ~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
+++.+. ...-+.-...++..|.|.|+-||.+||.....+
T Consensus 286 DM~Eme----------EErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 286 DMKEME----------EERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred HHHHHH----------HHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 111111 011123344667777777777777777766544
No 109
>KOG4578|consensus
Probab=93.67 E-value=0.071 Score=41.69 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=48.5
Q ss_pred HhhcCcCCCccccHHHHHHHhHHhcc-ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 11 LSLLSFAEIFPIFSQDFIQGLSVLSR-GSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 11 ~~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
|..+|.|+++.|.-.|+..+-.++.. ..+..=.+..|+..|.|++..|+..|+..+|..
T Consensus 339 F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 339 FNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 66889999999999997776655554 345566678899999999999999999999886
No 110
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.49 E-value=0.18 Score=31.22 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=48.8
Q ss_pred HHHHHHhhcCcCCCccccHHHHHHHhHHhccc--cHHHHHHHhhhhcccC----CCCcccHHHHHHHHHH
Q psy5340 6 KWERTLSLLSFAEIFPIFSQDFIQGLSVLSRG--SVEEKLRWTFTLYDIN----GDGRITREEMTNIVTA 69 (164)
Q Consensus 6 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~~F~~~D~~----~~G~I~~~e~~~~l~~ 69 (164)
++..+|..+.. +.+.|+.++|..++..-... .....+..++..|.++ ..+.+|.+.|...|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46788998865 67899999999998765543 2467788888888655 4799999999988864
No 111
>KOG0169|consensus
Probab=92.88 E-value=0.52 Score=40.82 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=55.1
Q ss_pred hhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc---ChHHHHHHhh
Q psy5340 86 SVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN---DEDIKRSIQV 161 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~---~~~~~~~~~~ 161 (164)
.++...|++.+|.+++.+-......+. ....+..+..+|+..+..+++.+..+++...... .|++...|..
T Consensus 140 ~~~~~ad~~~~~~~~~~~~~~~~~~~n-----~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~ 213 (746)
T KOG0169|consen 140 SIFQEADKNKNGHMSFDEVLDLLKQLN-----VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQ 213 (746)
T ss_pred HHHHHHccccccccchhhHHHHHHHHH-----HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHH
Confidence 567788899999999888777766554 3446778999999999999999999888877654 6666665544
No 112
>KOG4065|consensus
Probab=92.36 E-value=0.36 Score=32.17 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=43.6
Q ss_pred HHhhcCcCCCccccHHHHHHHhHHhccc--------------cHHHHHHHhhhhcccCCCCcccHHHHHHH
Q psy5340 10 TLSLLSFAEIFPIFSQDFIQGLSVLSRG--------------SVEEKLRWTFTLYDINGDGRITREEMTNI 66 (164)
Q Consensus 10 ~~~~~d~~~~g~i~~~ef~~~l~~~~~~--------------~~~~~~~~~F~~~D~~~~G~I~~~e~~~~ 66 (164)
-|+..|-++++.|+--|.+.+++.+..+ ..+..+..+.+--|.|++|+|++.||.+.
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3667788899999999999988776431 23345566777789999999999998753
No 113
>KOG0035|consensus
Probab=92.14 E-value=0.35 Score=42.72 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=78.3
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchh----hhccchhhhhhhhccchhhhHHHHHHHHHHhhh
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAET----VLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAE 113 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 113 (164)
....++...|..++....|..+.+++..++.. +|.+... ..+-..+++..++++.|.+.+.+|..-+..-.
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lms----lg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~- 818 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMS----LGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY- 818 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHh----cCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh-
Confidence 34578999999999999999999999999998 5555433 23444678888888989999999998886322
Q ss_pred hhhcccchHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy5340 114 TVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147 (164)
Q Consensus 114 ~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~ 147 (164)
+.......+-..|+.+-++.. +|..+|+..
T Consensus 819 ---e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 819 ---EDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred ---hhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 233356677788888887765 788888887
No 114
>KOG4347|consensus
Probab=91.32 E-value=0.55 Score=40.00 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=33.2
Q ss_pred ccHHHHHHHhHHhcc-ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 22 IFSQDFIQGLSVLSR-GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 22 i~~~ef~~~l~~~~~-~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
+++..|..++..+.+ .....-+..+|..+|.+++|.|+..++...|..+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 444445544444433 2233466789999999999999988888877764
No 115
>PLN02952 phosphoinositide phospholipase C
Probab=90.96 E-value=1.9 Score=36.88 Aligned_cols=51 Identities=8% Similarity=0.124 Sum_probs=41.2
Q ss_pred CCccccHHHHHHHhHHhcc--ccHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 18 EIFPIFSQDFIQGLSVLSR--GSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 18 ~~g~i~~~ef~~~l~~~~~--~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
+.|.++|.+|..+...+.. ..+..++..+|..+-. +.+.++.++|..+|..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHH
Confidence 3589999999988777643 2367799999999964 4478999999999987
No 116
>KOG1029|consensus
Probab=90.36 E-value=0.68 Score=40.42 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
-.+-++|+.+|+..+|.|+-..-..+|.. .+.++..+..++.+-|.|+||.++.+||.-++..+
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~q--S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQ--SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHh--cCCchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 45678999999999999988876655443 34677788899999999999999999999887754
No 117
>KOG0039|consensus
Probab=90.25 E-value=1.4 Score=38.21 Aligned_cols=91 Identities=20% Similarity=0.299 Sum_probs=68.8
Q ss_pred CccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchh
Q psy5340 19 IFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMT 98 (164)
Q Consensus 19 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
++ ++++||. +..++.+.+++-.|.++|. .+|.++.+++..++........ ....
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------ 55 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-LSLI------------------ 55 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-hhhh------------------
Confidence 46 8899988 5567899999999999997 9999999999999887644221 1100
Q ss_pred hhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChH
Q psy5340 99 NIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDED 154 (164)
Q Consensus 99 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~ 154 (164)
.....+....++...|.+..|.+...++..++...|.
T Consensus 56 -------------------~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~~ 92 (646)
T KOG0039|consen 56 -------------------KKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIPT 92 (646)
T ss_pred -------------------hhhhhHHHHHhhhhccccccceeeecchhHHHHhchH
Confidence 1224566777888888888888888888888776554
No 118
>KOG1707|consensus
Probab=89.03 E-value=2.1 Score=36.36 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhcCh
Q psy5340 123 NRVDSVFKKMDKNQDGVVTLDEFLECCLNDE 153 (164)
Q Consensus 123 ~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~ 153 (164)
+.+..+|..||.|+||.++..|+..+...-|
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 4788899999999999999999999988744
No 119
>KOG1955|consensus
Probab=88.52 E-value=0.94 Score=37.62 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=53.3
Q ss_pred chHHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 3 THDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
.++++..-|+.+-.+-.|.|+-.--..++..- .....++..++.+.|.+++|-++..||..++..+
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 35677788888888888988877655555432 3577899999999999999999999999988864
No 120
>KOG3555|consensus
Probab=88.21 E-value=0.51 Score=37.33 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
+.+-=||+.+|.+.|+.|+..|+.. +.....+.=++-.|...|.-.+|.|+..|.-.+...
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~----I~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRA----IELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhh----hhccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 4566699999999999999999655 333455667889999999999999999998876653
No 121
>KOG0046|consensus
Probab=85.56 E-value=4.2 Score=34.13 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=51.4
Q ss_pred HHHHHHhhcCcCCCccccHHHHHHHhHHhccc---cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 6 KWERTLSLLSFAEIFPIFSQDFIQGLSVLSRG---SVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 6 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~---~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
+...-|..+| +++|.|+..+...++...... -..++++.+-...++|.+|.|+.++|..+.-.+
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4556677788 889999999998887665432 346788999999999999999999999866553
No 122
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=85.51 E-value=1.1 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=23.4
Q ss_pred chHHHHHHHhhcCcCCCccccHHHHHHHhHH
Q psy5340 3 THDKWERTLSLLSFAEIFPIFSQDFIQGLSV 33 (164)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 33 (164)
|++.|+++|+.+-.+..|.|.|.+|+.-+..
T Consensus 5 tDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 5 TDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp -HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 6889999999999999999999999986654
No 123
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=84.14 E-value=5 Score=27.20 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=55.9
Q ss_pred cccHHHHHHHhHHhcc-------ccHHHHHHHhhhhcccCC--CCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhh
Q psy5340 21 PIFSQDFIQGLSVLSR-------GSVEEKLRWTFTLYDING--DGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRV 91 (164)
Q Consensus 21 ~i~~~ef~~~l~~~~~-------~~~~~~~~~~F~~~D~~~--~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 91 (164)
.|-|.-|..++..-.- --.-..+..+|+....+. +..|+..++..++..+...+....+....
T Consensus 14 ~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~-------- 85 (127)
T PF09068_consen 14 NIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQ-------- 85 (127)
T ss_dssp T-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS----------
T ss_pred hHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--------
Confidence 4666777665543221 122345567777776553 46799999999999876434322111000
Q ss_pred hhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy5340 92 DSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCL 150 (164)
Q Consensus 92 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~ 150 (164)
++-.. .+...+-.+..++..||++++|.|+.-+++..+.
T Consensus 86 -------i~~~~-------------v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 86 -------IPSRP-------------VDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp -------HH------------------HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred -------CCchh-------------HHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 00000 0122455788899999999999999999987664
No 124
>KOG4004|consensus
Probab=84.12 E-value=0.64 Score=33.98 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 122 TNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 122 ~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
+..+...|+.+|.|+||.|+++||..++.-
T Consensus 221 e~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 221 EHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred HhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 568899999999999999999999998864
No 125
>KOG2243|consensus
Probab=82.94 E-value=1.6 Score=40.91 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=46.0
Q ss_pred HhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHH
Q psy5340 45 WTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGK 110 (164)
Q Consensus 45 ~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 110 (164)
.-|+.||++|.|.|+..+|..+++. ..--+..+..-++.-...+.+...++++|+..+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~------~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG------HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc------cccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 4688999999999999999999884 22222223335667778888899999999998865
No 126
>KOG3866|consensus
Probab=82.02 E-value=3.2 Score=32.59 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=44.2
Q ss_pred HHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhh
Q psy5340 9 RTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVT 88 (164)
Q Consensus 9 ~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~ 88 (164)
-+|...|.++||.++-+|+-.+++. ++..+ ||+.+. -++++..-....+ |. ..+.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtk--------ELEKv---YdpkNe----eDDM~EmeEErlR-MR---------EHVM 302 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTK--------ELEKV---YDPKNE----EDDMKEMEEERLR-MR---------EHVM 302 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHH--------HHHHh---cCCCCc----chHHHHHHHHHHH-HH---------HHHH
Confidence 4677888999999999998877664 23333 343221 1112211111110 00 1456
Q ss_pred hhhhhccchhhhHHHHHHHHHH
Q psy5340 89 NRVDSVFKMTNIVTAIYELMGK 110 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~f~~~~~~ 110 (164)
+.+|.+.+.-|++++|+..-.+
T Consensus 303 k~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 303 KQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred HhcccchhhhhhHHHHHhhhhh
Confidence 6777778888888888777653
No 127
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=79.30 E-value=2.2 Score=25.82 Aligned_cols=48 Identities=19% Similarity=0.100 Sum_probs=31.7
Q ss_pred ccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 20 FPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 20 g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
-.++|.-....+.. ..+......+...|+.=+.+.|+++||.+.++.+
T Consensus 7 p~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34565554444443 3444555566666655578999999999999975
No 128
>KOG2871|consensus
Probab=76.56 E-value=1.2 Score=35.55 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=46.8
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHH
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELM 108 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 108 (164)
.+.+.++.+|+.+|+.++|+|+-+-++.++.++. +..+....+-.+-..+++..-+.+-+++|+..+
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N----~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN----RLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc----ccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 5677899999999999999999999999999843 222333333344445666666666666655554
No 129
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=74.19 E-value=5.9 Score=23.86 Aligned_cols=31 Identities=13% Similarity=0.272 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhcC
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLND 152 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~ 152 (164)
+.+++..+|+.+ .++.++||..|+.+.+...
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe 34 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE 34 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCcH
Confidence 567899999999 6788999999999998763
No 130
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=73.32 E-value=6.6 Score=17.81 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=9.0
Q ss_pred ccCCCCcccHHHHHH
Q psy5340 51 DINGDGRITREEMTN 65 (164)
Q Consensus 51 D~~~~G~I~~~e~~~ 65 (164)
|.|++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 456777777666553
No 131
>KOG1265|consensus
Probab=71.50 E-value=23 Score=32.01 Aligned_cols=46 Identities=13% Similarity=0.362 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 98 TNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 98 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
...++.|.....+++ ....++.+|..+..++.-++|.+++..++..
T Consensus 204 ~f~~e~f~~~l~klc--------pR~eie~iF~ki~~~~kpylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 204 DFTLEKFYRLLNKLC--------PRPEIEEIFRKISGKKKPYLTKEQLVDFLNK 249 (1189)
T ss_pred hccHHHHHHHHHhcC--------CchhHHHHHHHhccCCCccccHHHHHHHHhh
Confidence 345777777777655 5567999999999998899999999999976
No 132
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.47 E-value=23 Score=23.96 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=40.6
Q ss_pred HHHHHHhhcCcC--CCccccHHHHHHHhHHhc-------cccH-----------HHHHHHhhhhcccCCCCcccHHHHHH
Q psy5340 6 KWERTLSLLSFA--EIFPIFSQDFIQGLSVLS-------RGSV-----------EEKLRWTFTLYDINGDGRITREEMTN 65 (164)
Q Consensus 6 ~~~~~~~~~d~~--~~g~i~~~ef~~~l~~~~-------~~~~-----------~~~~~~~F~~~D~~~~G~I~~~e~~~ 65 (164)
.+.+.|.....+ .+..|+..+...+++.+. +... .--+.++...||+.++|.|+.-.++.
T Consensus 42 ~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kv 121 (127)
T PF09068_consen 42 NVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKV 121 (127)
T ss_dssp HHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHH
T ss_pred HHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHH
Confidence 345566655533 256799999888776654 1111 12467899999999999999999998
Q ss_pred HHHH
Q psy5340 66 IVTA 69 (164)
Q Consensus 66 ~l~~ 69 (164)
++..
T Consensus 122 aL~~ 125 (127)
T PF09068_consen 122 ALIT 125 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 133
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=66.42 E-value=33 Score=22.26 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=38.8
Q ss_pred HHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccC---CCCcccHHHHHHHHHHHH
Q psy5340 7 WERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDIN---GDGRITREEMTNIVTAIY 71 (164)
Q Consensus 7 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~---~~G~I~~~e~~~~l~~~~ 71 (164)
+++=|..+- .+|.|....|..++.+- ...+-+.++|..+-.. ..+.|+.+|++.++.++.
T Consensus 32 VE~RFd~La--~dG~L~rs~Fg~CIGM~---dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 32 VEKRFDKLA--KDGLLPRSDFGECIGMK---DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHH---BTTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHhC--cCCcccHHHHHHhcCCc---ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 344444443 37999999999988864 3455666777766422 357899999999998863
No 134
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=65.49 E-value=16 Score=22.06 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 98 TNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 98 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
-++|....+.+.+.. ....+..+...|+.=..++|+.+||.+.++.
T Consensus 8 ~~~F~~L~~~l~~~l--------~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 8 WMPFPMLFSALSKHL--------PPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred cccHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345555555554333 4555666666666656789999999999886
No 135
>KOG4301|consensus
Probab=65.39 E-value=39 Score=27.04 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=37.5
Q ss_pred HHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 10 TLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 10 ~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
+++.+|..+.|.++.---...++.++.+...++++.+|.... +.+|.+..-.+-+++..
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 455667666676665555556666666666777777777765 34566665555555554
No 136
>KOG4004|consensus
Probab=65.38 E-value=3 Score=30.60 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=38.3
Q ss_pred hcCcC-CCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHH
Q psy5340 13 LLSFA-EIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVT 68 (164)
Q Consensus 13 ~~d~~-~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 68 (164)
.+|+. -||.+|-.|++-+-+.+. ..+.=....|...|.|++|+|+..|...++.
T Consensus 195 qld~~p~d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 195 QLDQHPIDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred cccCCCccccccccccccccCCcc--cHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 34543 377888887666444333 3455667889999999999999999886654
No 137
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=61.95 E-value=50 Score=23.04 Aligned_cols=24 Identities=4% Similarity=0.253 Sum_probs=17.5
Q ss_pred hhhcccCCCCcccHHHHHHHHHHH
Q psy5340 47 FTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 47 F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
|..|-..+...++...|..+++..
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~ 31 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDC 31 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHT
T ss_pred HHHhcCCccccccHHHHHHHHHHc
Confidence 444445667788999999999874
No 138
>KOG0042|consensus
Probab=61.51 E-value=16 Score=31.18 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=23.1
Q ss_pred HHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 41 EKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 41 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
..++.-|..+|.++.|+++.+++..+++.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~ 621 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKS 621 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888776
No 139
>KOG1265|consensus
Probab=61.08 E-value=43 Score=30.40 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=58.4
Q ss_pred ccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhH
Q psy5340 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIV 101 (164)
Q Consensus 22 i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (164)
.++..|..++..++ +..++..+|..+-.+..-++|.++|..+|..- ...| .+
T Consensus 205 f~~e~f~~~l~klc---pR~eie~iF~ki~~~~kpylT~~ql~dfln~~----QrDp--RL------------------- 256 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLC---PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKK----QRDP--RL------------------- 256 (1189)
T ss_pred ccHHHHHHHHHhcC---CchhHHHHHHHhccCCCccccHHHHHHHHhhh----ccCc--ch-------------------
Confidence 45555666666665 44567788888877777889998888888751 0000 00
Q ss_pred HHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCC----CCcccHHHHHHHHhc
Q psy5340 102 TAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQ----DGVVTLDEFLECCLN 151 (164)
Q Consensus 102 ~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~----~g~Is~~E~~~~l~~ 151 (164)
....-....++.+..+.+.|..++ +|.++.+-|...+..
T Consensus 257 -----------Neilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 257 -----------NEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred -----------hhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 001113345677888888887764 577888888887765
No 140
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=60.99 E-value=45 Score=21.92 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=16.3
Q ss_pred hhcccCCCCcccHHHHHHHHHH
Q psy5340 48 TLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 48 ~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
++||...+-+||.++++..+..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 3567777788888888777764
No 141
>KOG0998|consensus
Probab=57.84 E-value=4 Score=36.56 Aligned_cols=65 Identities=28% Similarity=0.352 Sum_probs=51.4
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhc
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLE 117 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 117 (164)
.....+..+|...|.+.+|.|+..+.+..+..
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~------------------------------------------------ 311 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLP------------------------------------------------ 311 (847)
T ss_pred HHHHHHHHHHHhccccCCCccccccccccccc------------------------------------------------
Confidence 34567778999999999999998888877665
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCL 150 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~ 150 (164)
-++....+..++...|.++.|.+++.++.-.+.
T Consensus 312 ~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 312 FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred CCCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 133566788899999999999999988776554
No 142
>KOG0998|consensus
Probab=56.18 E-value=5.1 Score=35.91 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=54.5
Q ss_pred HHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 6 KWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 6 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
.+.++|...|.+.+|.|+..++...+.. .+.....+..++...|..+.|.+++.++.-.+..+
T Consensus 284 ~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 284 KYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 4567899999999999999998886544 57888899999999999999999999888777764
No 143
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=55.46 E-value=27 Score=24.08 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=23.8
Q ss_pred ccccHHHHHHHhHHhccccHHHHHHHhhhhcc-------cCCCCcccHHHHHHHHHHH
Q psy5340 20 FPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYD-------INGDGRITREEMTNIVTAI 70 (164)
Q Consensus 20 g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D-------~~~~G~I~~~e~~~~l~~~ 70 (164)
+.|+-.||.++=..... + ..+++.+...|. -+..+.|+.+-|+..|+..
T Consensus 6 ~~lsp~eF~qLq~y~ey-s-~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY-S-TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHHH-H-HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH
Confidence 46677777663222211 1 124444444442 2345689999999988874
No 144
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=54.60 E-value=32 Score=24.00 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=44.2
Q ss_pred HHHhhc---CcCCCccccHHHHHHHhHH---hccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcc
Q psy5340 9 RTLSLL---SFAEIFPIFSQDFIQGLSV---LSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGK 76 (164)
Q Consensus 9 ~~~~~~---d~~~~g~i~~~ef~~~l~~---~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~ 76 (164)
++|..| -..+...++-..|..++.- +...-....+-.+|..+-..+...|++++|..+|..++...+.
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~ 76 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGK 76 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhc
Confidence 444444 3333456777777776643 3334556678889999866677789999999999998776654
No 145
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=54.34 E-value=21 Score=21.43 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=18.9
Q ss_pred HHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhc
Q psy5340 42 KLRWTFTLYDINGDGRITREEMTNIVTAIYELMG 75 (164)
Q Consensus 42 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g 75 (164)
.+..+....+.+.+--+-..+++.++..++..+|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG 57 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITG 57 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444333334556777777777777665
No 146
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=50.62 E-value=32 Score=24.05 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=32.9
Q ss_pred HHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccch
Q psy5340 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGS 86 (164)
Q Consensus 41 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~ 86 (164)
+.+..--...|.++.|++|.+|++.++-.+...++..+.-++-++.
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee~Lrq 114 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEEQLRQ 114 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3555566677888999999999999999887767555444433333
No 147
>KOG0042|consensus
Probab=50.41 E-value=32 Score=29.52 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=54.7
Q ss_pred HHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 6 KWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 6 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
.+...|..+|.++.|.++....+..+.....+-.++.+.++-+..|.+-+|.+...|+.+.+..+
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 34567888999888999999888888777656677888899999999999999999999888864
No 148
>PLN02228 Phosphoinositide phospholipase C
Probab=45.70 E-value=83 Score=27.09 Aligned_cols=65 Identities=8% Similarity=-0.021 Sum_probs=47.2
Q ss_pred chHHHHHHHhhcCcCCCccccHHHHHHHhHHhccc--cHHHHHHHhhhhcccC----CCCcccHHHHHHHHHH
Q psy5340 3 THDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRG--SVEEKLRWTFTLYDIN----GDGRITREEMTNIVTA 69 (164)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~~F~~~D~~----~~G~I~~~e~~~~l~~ 69 (164)
.+.++.++|..+-. ++.++.++|..++...... ...+.+..+|..|.+. ..|.++.+.|...|..
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 45788999998853 3579999999988765432 2345677778877543 3478999999888764
No 149
>KOG1707|consensus
Probab=45.56 E-value=23 Score=30.36 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=42.3
Q ss_pred HHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHH-hcccchhhhccchhhhhhhhccchhhhHHHHHHHHH
Q psy5340 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYEL-MGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMG 109 (164)
Q Consensus 40 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 109 (164)
.+.+..+|..||.++||.++.+|+..+....... .|+.+..+.. .....|.+++.-|++.|.
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t--------~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST--------VKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc--------eecccceeehhhHHHHHH
Confidence 4678899999999999999999999888763110 1111222111 122677888888888775
No 150
>KOG2243|consensus
Probab=45.14 E-value=50 Score=31.94 Aligned_cols=68 Identities=9% Similarity=0.051 Sum_probs=50.4
Q ss_pred HHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccc
Q psy5340 10 TLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFA 78 (164)
Q Consensus 10 ~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~ 78 (164)
.|..+|+++.|.|+-.+|..++..-- .-.+.++..+......+.+...++++|..-...-.+..|.+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfhepakdigfnv 4129 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKDIGFNV 4129 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhcCchhhcCcch
Confidence 36778999999999999999875432 234456667777777788899999999887665555556554
No 151
>COG4304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.55 E-value=47 Score=23.05 Aligned_cols=52 Identities=8% Similarity=0.100 Sum_probs=34.3
Q ss_pred hccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcC
Q psy5340 82 LEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMD 133 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D 133 (164)
.+...+++.+..|.+.....+.|++.|...-.-.......++-..++|+.++
T Consensus 103 ~EpL~~VE~iYaDFdYPe~iEsFvAYMP~kdgy~p~aHS~eeN~~Rl~~Nw~ 154 (166)
T COG4304 103 EEPLGEVEKIYADFDYPEEIESFVAYMPPKDGYIPSAHSYEENIARLYSNWE 154 (166)
T ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHH
Confidence 3444778899999999999999999996432111112234556666666554
No 152
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.28 E-value=90 Score=20.54 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=14.1
Q ss_pred ccHHHHHHHHHHHHHHhcccchh
Q psy5340 58 ITREEMTNIVTAIYELMGKFAET 80 (164)
Q Consensus 58 I~~~e~~~~l~~~~~~~g~~~~~ 80 (164)
|++--++.-+..+..+||++|..
T Consensus 69 ~sYptvR~kld~vlramgy~p~~ 91 (122)
T COG3877 69 ISYPTVRTKLDEVLRAMGYNPDS 91 (122)
T ss_pred CccHHHHHHHHHHHHHcCCCCCC
Confidence 34444555566666668888754
No 153
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=43.83 E-value=79 Score=19.89 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=38.0
Q ss_pred ccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 20 FPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 20 g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
-.|...+|...+....+.+...+...+=..+|.-.||+||.=||-...+.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 36999999999988876555555566666889999999999999887775
No 154
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=43.21 E-value=39 Score=18.21 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=21.3
Q ss_pred HHHHhhhhcc-c-CCCCcccHHHHHHHHHH
Q psy5340 42 KLRWTFTLYD-I-NGDGRITREEMTNIVTA 69 (164)
Q Consensus 42 ~~~~~F~~~D-~-~~~G~I~~~e~~~~l~~ 69 (164)
.+-.+|+.|. . .....+++.||+..+..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4567888885 2 34668999999999885
No 155
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=41.72 E-value=84 Score=20.89 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=14.5
Q ss_pred ccHHHHHHHHHHHHHHhccc
Q psy5340 58 ITREEMTNIVTAIYELMGKF 77 (164)
Q Consensus 58 I~~~e~~~~l~~~~~~~g~~ 77 (164)
||+--+++-|..+...+|..
T Consensus 61 iSYPTvR~rLd~ii~~lg~~ 80 (113)
T PF09862_consen 61 ISYPTVRNRLDKIIEKLGYE 80 (113)
T ss_pred CCcHHHHHHHHHHHHHhCCC
Confidence 66777777777777777773
No 156
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=41.64 E-value=14 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.2
Q ss_pred HhcCCCCCCcccHHHHHHHHhcC
Q psy5340 130 KKMDKNQDGVVTLDEFLECCLND 152 (164)
Q Consensus 130 ~~~D~d~~g~Is~~E~~~~l~~~ 152 (164)
++||...+.+||++++.++++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g 32 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREG 32 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCC
Confidence 36899999999999999999873
No 157
>KOG4403|consensus
Probab=41.08 E-value=53 Score=27.19 Aligned_cols=54 Identities=17% Similarity=0.059 Sum_probs=39.9
Q ss_pred CCCccccHHHHHHHhHHhcccc----HHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 17 AEIFPIFSQDFIQGLSVLSRGS----VEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 17 ~~~g~i~~~ef~~~l~~~~~~~----~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
.|+...+-.||+......+... --+.++.+-+..|-|++|.|+.+|--.+++.=
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHH
Confidence 4555677788877665555422 22567778888999999999999999888863
No 158
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=40.61 E-value=91 Score=19.64 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=38.4
Q ss_pred CCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccch--hhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhc
Q psy5340 55 DGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKM--TNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKM 132 (164)
Q Consensus 55 ~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 132 (164)
||.++.+|...+...+....+..+... ..+...+...... ...+.++...+..... .......+..++...
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~ia 88 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDR---ERLIALLDKLLALLRPEGLAALLKAAAKLLP----PELRETAFAVAVDIA 88 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhCC----HHHHHHHHHHHHHHH
Confidence 577777777777666432222222111 1233333333333 4445555555543221 112333444455555
Q ss_pred CCCCCCcccHHHHH
Q psy5340 133 DKNQDGVVTLDEFL 146 (164)
Q Consensus 133 D~d~~g~Is~~E~~ 146 (164)
.- ||.++..|-.
T Consensus 89 ~a--DG~~~~~E~~ 100 (111)
T cd07176 89 AA--DGEVDPEERA 100 (111)
T ss_pred Hc--cCCCCHHHHH
Confidence 43 4677766543
No 159
>KOG0035|consensus
Probab=40.31 E-value=80 Score=28.66 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=52.9
Q ss_pred cchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
++.+.++.++...+....++|..++.........+......+..+...-|.+.-|.+++.++...+..
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 34667778888899999999999998876555543444556666777778787899999999999876
No 160
>PLN02952 phosphoinositide phospholipase C
Probab=40.24 E-value=77 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
....+..+|..+-.++ +.++.++|...+..
T Consensus 36 ~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~ 65 (599)
T PLN02952 36 PPDDVKDVFCKFSVGG-GHMGADQLRRFLVL 65 (599)
T ss_pred ChHHHHHHHHHHhCCC-CccCHHHHHHHHHH
Confidence 3456667777775433 56777777777755
No 161
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=37.37 E-value=53 Score=20.13 Aligned_cols=21 Identities=24% Similarity=0.040 Sum_probs=17.5
Q ss_pred CcCCCccccHHHHHHHhHHhc
Q psy5340 15 SFAEIFPIFSQDFIQGLSVLS 35 (164)
Q Consensus 15 d~~~~g~i~~~ef~~~l~~~~ 35 (164)
-.+..|.|+++.|+..|++..
T Consensus 12 ~~n~~G~iTl~gfLa~W~l~T 32 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQWSLTT 32 (76)
T ss_pred EEcCCCcCcHHHHHHHHHHHH
Confidence 357789999999999988754
No 162
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=35.91 E-value=1.2e+02 Score=24.28 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhc-ChHHHHHHhhh
Q psy5340 124 RVDSVFKKMDKNQDGVVTLDEFLECCLN-DEDIKRSIQVF 162 (164)
Q Consensus 124 ~~~~~f~~~D~d~~g~Is~~E~~~~l~~-~~~~~~~~~~~ 162 (164)
.++-+-+.|..+=+|++=+.|+..-+++ +|.+.++|.++
T Consensus 80 FidFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lM 119 (351)
T CHL00185 80 FVEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLM 119 (351)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHH
Confidence 3333444444455677777777777754 67777776654
No 163
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=34.98 E-value=1.6e+02 Score=20.68 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
...+.++..-|.+..|.|++..|...++- ++-.+-...=..++..++.+++...+..+
T Consensus 83 s~Lehllg~~~~~~n~~i~~~~ff~~lQ~--------~lGdWIT~~~Lkh~n~MSk~Qik~L~~~I 140 (175)
T PF04876_consen 83 SFLEHLLGGEDDSTNGLIDIGKFFDILQP--------KLGDWITKNFLKHPNRMSKDQIKTLCEQI 140 (175)
T ss_pred HHHHHHhcCCcCCcccceeHHHHHHHHHH--------HhhhHHHHHHHhccchhhHHHHHHHHHHH
Confidence 34455555433334566777777776553 22222222222456677777777777654
No 164
>PLN02228 Phosphoinositide phospholipase C
Probab=34.65 E-value=1.4e+02 Score=25.83 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=24.2
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
.+..++..+|..+-. ++.++.++|..+|..
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~ 50 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSE 50 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHH
Confidence 466788899988863 368999999988886
No 165
>KOG2301|consensus
Probab=33.86 E-value=38 Score=32.80 Aligned_cols=70 Identities=10% Similarity=-0.000 Sum_probs=51.6
Q ss_pred HHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHH
Q psy5340 39 VEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGK 110 (164)
Q Consensus 39 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 110 (164)
.-+.+..++..||++..|.|...++...++.+-..++.....+. +.+...+....++.+++.+-+-++..
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 44688999999999999999999999999987555555443322 23444455557778888877777664
No 166
>KOG2419|consensus
Probab=33.68 E-value=47 Score=29.06 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=48.4
Q ss_pred HHHHHHHhhcCcCCCccccHHHHHHHhHHhccc---------cHHHHHHHhhhhcccCCC--------------------
Q psy5340 5 DKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRG---------SVEEKLRWTFTLYDINGD-------------------- 55 (164)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~---------~~~~~~~~~F~~~D~~~~-------------------- 55 (164)
-...+++..+|-+.++.++|.+|......+-.- .........|...|.+++
T Consensus 437 c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~ 516 (975)
T KOG2419|consen 437 CFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLK 516 (975)
T ss_pred hhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccc
Confidence 356778888998999999999987654444321 112235667888899998
Q ss_pred ---CcccHHHHHHHHHH
Q psy5340 56 ---GRITREEMTNIVTA 69 (164)
Q Consensus 56 ---G~I~~~e~~~~l~~ 69 (164)
|.++.+|...+++.
T Consensus 517 ~s~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 517 KSFGVVTVDELVALLAL 533 (975)
T ss_pred cccCeeEHHHHHHHHHH
Confidence 99999999998884
No 167
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=33.59 E-value=76 Score=17.66 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=19.6
Q ss_pred CCcccHHHHHHHHhcChH-HHHHHhhhc
Q psy5340 137 DGVVTLDEFLECCLNDED-IKRSIQVFD 163 (164)
Q Consensus 137 ~g~Is~~E~~~~l~~~~~-~~~~~~~~d 163 (164)
.|.|+..+|+..+..+-. ...++..||
T Consensus 8 ~~~itv~~~rd~lg~sRK~ai~lLE~lD 35 (50)
T PF09107_consen 8 NGEITVAEFRDLLGLSRKYAIPLLEYLD 35 (50)
T ss_dssp TSSBEHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHCccHHHHHHHHHHHh
Confidence 688999999999987444 445555555
No 168
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=33.19 E-value=1.7e+02 Score=23.42 Aligned_cols=40 Identities=5% Similarity=0.063 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhc-ChHHHHHHhhhc
Q psy5340 124 RVDSVFKKMDKNQDGVVTLDEFLECCLN-DEDIKRSIQVFD 163 (164)
Q Consensus 124 ~~~~~f~~~D~d~~g~Is~~E~~~~l~~-~~~~~~~~~~~d 163 (164)
.++-+-+.|..+=+|++=+.|+..-+++ +|.+.++|.++-
T Consensus 80 FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMa 120 (357)
T PLN02508 80 FIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMS 120 (357)
T ss_pred HHHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhC
Confidence 4444444555566777777887777754 777777776553
No 169
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=32.63 E-value=49 Score=20.30 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=8.5
Q ss_pred CCCcccHHHHHHHHHH
Q psy5340 54 GDGRITREEMTNIVTA 69 (164)
Q Consensus 54 ~~G~I~~~e~~~~l~~ 69 (164)
..|+||++++..++..
T Consensus 18 ~~G~lT~~eI~~~L~~ 33 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE 33 (82)
T ss_dssp HHSS-BHHHHHHH-S-
T ss_pred hcCcCCHHHHHHHcCc
Confidence 3567777777666653
No 170
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=32.04 E-value=1.4e+02 Score=19.89 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHh
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQ 160 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~ 160 (164)
..+.++.+.+..-..+...|+...+...+.+++++..+|+
T Consensus 55 ~aEIlelA~n~ak~~k~krItp~hi~lAi~nD~EL~~L~~ 94 (115)
T cd00074 55 TAEVLELAGNAARDNKKKRITPRHLQLAVRNDEELNKLLK 94 (115)
T ss_pred HHHHHHHHHHHHHHcCCCeEcHHHHHHHHhccHHHHHHHc
Confidence 4556666666666667788999999999999999988875
No 171
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.76 E-value=2.1e+02 Score=20.96 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=29.8
Q ss_pred ccchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc---ChHHHHHHh
Q psy5340 118 DGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN---DEDIKRSIQ 160 (164)
Q Consensus 118 ~~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~---~~~~~~~~~ 160 (164)
.+..++...-+...|..|+.|.|+......+.+. +|...+.+.
T Consensus 114 ~g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl~i~D~~w~~am~ 159 (195)
T PF11363_consen 114 KGADPELRALVNRAFQVDKEGNLNTSRILGLRRLEIDDERWQEAMD 159 (195)
T ss_pred cCCChHHHHHHHHHHhcCCCCCcCHHHHHHHHhccCCCHHHHHHHH
Confidence 3445556666677788899999999988888765 555444433
No 172
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=31.26 E-value=1.5e+02 Score=23.80 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHh-cChHHHHHHhhh
Q psy5340 124 RVDSVFKKMDKNQDGVVTLDEFLECCL-NDEDIKRSIQVF 162 (164)
Q Consensus 124 ~~~~~f~~~D~d~~g~Is~~E~~~~l~-~~~~~~~~~~~~ 162 (164)
.++-+-+.|..+=+|++=+.|+..-++ .+|.+.++|.++
T Consensus 84 FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lM 123 (355)
T PRK13654 84 FIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLM 123 (355)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHH
Confidence 344444444555567777777777776 367777777654
No 173
>KOG2557|consensus
Probab=30.89 E-value=3e+02 Score=22.53 Aligned_cols=52 Identities=12% Similarity=0.387 Sum_probs=42.2
Q ss_pred cccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHH
Q psy5340 21 PIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72 (164)
Q Consensus 21 ~i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 72 (164)
.+++.+++........+...+..+.++...|.+++|..+...+.+.+....+
T Consensus 74 ~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlk 125 (427)
T KOG2557|consen 74 KMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLK 125 (427)
T ss_pred cchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhh
Confidence 5777877776666666777778889999999999999999999998887533
No 174
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=30.23 E-value=1.7e+02 Score=23.11 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhc-ChHHHHHHhhh
Q psy5340 124 RVDSVFKKMDKNQDGVVTLDEFLECCLN-DEDIKRSIQVF 162 (164)
Q Consensus 124 ~~~~~f~~~D~d~~g~Is~~E~~~~l~~-~~~~~~~~~~~ 162 (164)
.++-+-+.|..+=+|++=+.|+..-+++ +|.+.++|.++
T Consensus 64 FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lM 103 (323)
T cd01047 64 FLEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLM 103 (323)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 3333344444455677777777766654 66666666654
No 175
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=29.52 E-value=1.5e+02 Score=23.49 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=20.7
Q ss_pred ccccHHHHHHHhhhhc--ccCCCCcccHHHHHHHHHH
Q psy5340 35 SRGSVEEKLRWTFTLY--DINGDGRITREEMTNIVTA 69 (164)
Q Consensus 35 ~~~~~~~~~~~~F~~~--D~~~~G~I~~~e~~~~l~~ 69 (164)
.-...++++..+...+ |.|+.-.+--+||.+....
T Consensus 29 d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~ 65 (337)
T TIGR02029 29 DVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEH 65 (337)
T ss_pred CCchhHHHHHHHHHHHHhCccccccccChhhhcchhh
Confidence 3334555666666555 6666667777777664443
No 176
>smart00414 H2A Histone 2A.
Probab=29.44 E-value=1.3e+02 Score=19.64 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHh
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQ 160 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~ 160 (164)
..+.++.+.+..-.++...|+...+...+.+++++..+++
T Consensus 44 taEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~L~~ 83 (106)
T smart00414 44 TAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNKLLK 83 (106)
T ss_pred HHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHHHHc
Confidence 4455555555555556778999999999999999887775
No 177
>KOG2419|consensus
Probab=29.11 E-value=57 Score=28.57 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=26.0
Q ss_pred HHHHhhhhcccCCCCcccHHHHHHHHHHHHHHh
Q psy5340 42 KLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74 (164)
Q Consensus 42 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~ 74 (164)
-.+.++..+|.+-++..+..++.....+++..+
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vv 470 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVV 470 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHHHH
Confidence 446778889999999999999988877765433
No 178
>KOG1954|consensus
Probab=28.51 E-value=87 Score=25.77 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLE 147 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~ 147 (164)
....+-.+++..|.|.||-++-+||.-
T Consensus 475 pnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 475 PNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 556788899999999999999999864
No 179
>PLN02230 phosphoinositide phospholipase C 4
Probab=28.12 E-value=2.3e+02 Score=24.69 Aligned_cols=66 Identities=5% Similarity=-0.037 Sum_probs=43.8
Q ss_pred chHHHHHHHhhcCcCCCccccHHHHHHHhHHhcccc---HHHHHHHhhhhc-------ccCCCCcccHHHHHHHHHH
Q psy5340 3 THDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGS---VEEKLRWTFTLY-------DINGDGRITREEMTNIVTA 69 (164)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~---~~~~~~~~F~~~-------D~~~~G~I~~~e~~~~l~~ 69 (164)
.+.++..+|..+..++ +.++.++|..+|....... ..+.+..++..+ ..-+.+.++.+.|...|..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4578999999996444 7899999999987755322 233444444432 1223456898888887754
No 180
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=27.90 E-value=1.1e+02 Score=19.80 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=34.6
Q ss_pred ccHHHHHHHhHHhccccHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 22 i~~~ef~~~l~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
+--.+|..+++.+.+...++++..+-..+-..+...++..++...+..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~v 68 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRV 68 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 5556788888888877777788887777766666666888888777764
No 181
>KOG2871|consensus
Probab=27.75 E-value=59 Score=26.42 Aligned_cols=31 Identities=6% Similarity=0.161 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
..++++++|..+|+.++|+|+..-+..++..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~ 337 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTA 337 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHH
Confidence 4679999999999999999998877777654
No 182
>PLN02223 phosphoinositide phospholipase C
Probab=27.45 E-value=1.7e+02 Score=25.11 Aligned_cols=72 Identities=6% Similarity=-0.078 Sum_probs=45.8
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhc--------cchhhhHHHHHHHHH
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSV--------FKMTNIVTAIYELMG 109 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~f~~~~~ 109 (164)
.+.+.++.+|..|- .++|.++.+.+...+.-+...-|.......+...+++.+-.. ....++++.|...+.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 45567888888885 677889999999888655444454443333334554443222 124578888888876
Q ss_pred H
Q psy5340 110 K 110 (164)
Q Consensus 110 ~ 110 (164)
+
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 4
No 183
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=27.26 E-value=1.5e+02 Score=18.07 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=12.3
Q ss_pred CCcccHHHHHHHHHHHHH
Q psy5340 55 DGRITREEMTNIVTAIYE 72 (164)
Q Consensus 55 ~G~I~~~e~~~~l~~~~~ 72 (164)
||.|+.+|...+...+..
T Consensus 13 DG~i~~~E~~~i~~~~~~ 30 (104)
T cd07177 13 DGRVDEEEIAAIEALLRR 30 (104)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 677887777776665443
No 184
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=27.23 E-value=57 Score=16.28 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=13.2
Q ss_pred CCCcccHHHHHHHHhc
Q psy5340 136 QDGVVTLDEFLECCLN 151 (164)
Q Consensus 136 ~~g~Is~~E~~~~l~~ 151 (164)
+.|.|+.+|+..++..
T Consensus 1 ~~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 1 SSGTISKEEYLDMASR 16 (33)
T ss_pred CCceecHHHHHHHHHH
Confidence 3688999999988876
No 185
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=27.03 E-value=1.7e+02 Score=18.36 Aligned_cols=85 Identities=16% Similarity=0.122 Sum_probs=46.6
Q ss_pred CCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcCC
Q psy5340 55 DGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDK 134 (164)
Q Consensus 55 ~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~ 134 (164)
||.++..|...+-..+...+|..+... ..+++.+........++.+|...+.... ........+..++...--
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~~~l~~L~~vA~A 85 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEA---AELLAEAEALEEEAPDLYEFTSLIKEHF----DYEERLELVEALWEVAYA 85 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHh
Confidence 677888887777666555445433222 2444444444445566777777665322 012234456666665544
Q ss_pred CCCCcccHHHHHHH
Q psy5340 135 NQDGVVTLDEFLEC 148 (164)
Q Consensus 135 d~~g~Is~~E~~~~ 148 (164)
||.++..|-.-+
T Consensus 86 --DG~~~~~E~~~l 97 (104)
T cd07313 86 --DGELDEYEEHLI 97 (104)
T ss_pred --cCCCCHHHHHHH
Confidence 467777765443
No 186
>PLN02222 phosphoinositide phospholipase C 2
Probab=26.98 E-value=1.9e+02 Score=25.08 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=23.2
Q ss_pred HHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 39 VEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 39 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
+..++..+|..+-. ++.++.++|..+|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~ 51 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLID 51 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHH
Confidence 44588888888863 479999999988886
No 187
>PLN00153 histone H2A; Provisional
Probab=26.17 E-value=1.6e+02 Score=20.08 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHh
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQ 160 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~ 160 (164)
..+.++.+-+..-.++...|+...+...+.+++++..+|+
T Consensus 59 taEVLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~ 98 (129)
T PLN00153 59 TAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLG 98 (129)
T ss_pred HHHHHHHHHHHHHhcCCCccChHHHHhhccCcHHHHHHHC
Confidence 4556666666666667788999999999999999887775
No 188
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=25.94 E-value=1.4e+02 Score=17.46 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=22.2
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHH
Q psy5340 126 DSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSI 159 (164)
Q Consensus 126 ~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~ 159 (164)
+.+|+.| .+..|.|+..++...+...+.-..-+
T Consensus 10 dkA~e~y-~~~~g~i~lkdIA~~Lgvs~~tIr~W 42 (60)
T PF10668_consen 10 DKAFEIY-KESNGKIKLKDIAEKLGVSESTIRKW 42 (60)
T ss_pred HHHHHHH-HHhCCCccHHHHHHHHCCCHHHHHHH
Confidence 3445544 34678999999999998766544433
No 189
>PLN02230 phosphoinositide phospholipase C 4
Probab=25.74 E-value=2.7e+02 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=26.1
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHH
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 69 (164)
.+..++..+|..|-.++ +.++.++|..+|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~ 56 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAE 56 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHH
Confidence 45678999999996444 89999999999987
No 190
>KOG4286|consensus
Probab=25.24 E-value=1.2e+02 Score=27.09 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=41.6
Q ss_pred HHHHHHhhcCcC-CCccccHHHHHHHhHHhccc-------------cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHH
Q psy5340 6 KWERTLSLLSFA-EIFPIFSQDFIQGLSVLSRG-------------SVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70 (164)
Q Consensus 6 ~~~~~~~~~d~~-~~g~i~~~ef~~~l~~~~~~-------------~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 70 (164)
.+..+|...+-. ++..++..+.+.++...... -..--+.+..+.||+.++|.|..-+|+..+-.+
T Consensus 421 l~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~l 499 (966)
T KOG4286|consen 421 LALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISL 499 (966)
T ss_pred HHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHH
Confidence 355677777654 34445666555544432211 112245788899999999999999999877764
No 191
>PLN02222 phosphoinositide phospholipase C 2
Probab=24.77 E-value=2.5e+02 Score=24.39 Aligned_cols=64 Identities=5% Similarity=-0.091 Sum_probs=45.0
Q ss_pred hHHHHHHHhhcCcCCCccccHHHHHHHhHHhccc--cHHHHHHHhhhhccc-CCCCcccHHHHHHHHHH
Q psy5340 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRG--SVEEKLRWTFTLYDI-NGDGRITREEMTNIVTA 69 (164)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~~F~~~D~-~~~G~I~~~e~~~~l~~ 69 (164)
..++.++|..+.. .+.++.++|..+|...... ...+.+..++..+.. .+.+.++.+.|...|..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 4688999998853 4689999999988765542 234456666766532 34677998888887764
No 192
>PTZ00017 histone H2A; Provisional
Probab=24.69 E-value=1.8e+02 Score=19.99 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHh
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQ 160 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~ 160 (164)
..+.++.+.+..-.++...|+...+...+.+++++..+|.
T Consensus 62 taEILELAgNaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~ 101 (134)
T PTZ00017 62 TAEVLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLA 101 (134)
T ss_pred HHHHHHHHHHHHHhcCCCeecHHHHHhhccCcHHHHHHHc
Confidence 4556666666666667778999999999999999888774
No 193
>PLN00157 histone H2A; Provisional
Probab=24.28 E-value=1.7e+02 Score=20.05 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHh
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQ 160 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~ 160 (164)
..+.++.+-+..-.++...|+...+...+.+++++..+|+
T Consensus 61 taEVLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~ 100 (132)
T PLN00157 61 AAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLG 100 (132)
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHhhcccCcHHHHHHHc
Confidence 4556666666666667778999999999999999887775
No 194
>PLN00156 histone H2AX; Provisional
Probab=23.90 E-value=1.9e+02 Score=19.97 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhcChHHHHHHh
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQ 160 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~~~~~~~~~~ 160 (164)
..+.++.+-+..-.++...|+...+...+++++++..+|+
T Consensus 64 taEVLELAgNaa~d~kk~RItPrHi~lAIrnDeEL~~Ll~ 103 (139)
T PLN00156 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG 103 (139)
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHhhccCcHHHHHHHC
Confidence 4556666666666667778999999999999999887764
No 195
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=23.44 E-value=1.1e+02 Score=20.84 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=17.7
Q ss_pred CCcccHHHHHHHHhcChHHHHHH
Q psy5340 137 DGVVTLDEFLECCLNDEDIKRSI 159 (164)
Q Consensus 137 ~g~Is~~E~~~~l~~~~~~~~~~ 159 (164)
+|.||..||...+..++.+.+.+
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f 64 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRF 64 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHH
Confidence 68899999999999877665543
No 196
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=23.28 E-value=1.6e+02 Score=23.34 Aligned_cols=11 Identities=64% Similarity=0.903 Sum_probs=4.6
Q ss_pred CCcccHHHHHH
Q psy5340 55 DGRITREEMTN 65 (164)
Q Consensus 55 ~G~I~~~e~~~ 65 (164)
+|.||++|=..
T Consensus 300 ~G~itReeal~ 310 (343)
T TIGR03573 300 SGRITREEAIE 310 (343)
T ss_pred cCCCCHHHHHH
Confidence 34444444333
No 197
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=23.18 E-value=2e+02 Score=18.04 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=17.3
Q ss_pred cchHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 119 GSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 119 ~~~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
..+.+.++.++...- ..|..-.+-|.+++..
T Consensus 42 ~T~qdkmRkLld~v~--akG~~~k~~F~~iL~e 72 (85)
T cd08324 42 PTQPDKVRKILDLVQ--SKGEEVSEYFLYLLQQ 72 (85)
T ss_pred CCCHHHHHHHHHHHH--hcCchHHHHHHHHHHH
Confidence 345666667666633 3444555556665554
No 198
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=23.01 E-value=73 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.0
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 127 SVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 127 ~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
.+...+|.|++|.++.+|+..+...
T Consensus 54 ~ll~~~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 54 YLLEGLDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred HHHHhhhhcccCCCCHHHHHHHHHH
Confidence 3456899999999999999988764
No 199
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=22.88 E-value=1.5e+02 Score=18.50 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=25.2
Q ss_pred CccccHHHHHHHhHHhccccHHHHHHHhhhh--cccCCCCc-c-cHHHHHHHHHH
Q psy5340 19 IFPIFSQDFIQGLSVLSRGSVEEKLRWTFTL--YDINGDGR-I-TREEMTNIVTA 69 (164)
Q Consensus 19 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~F~~--~D~~~~G~-I-~~~e~~~~l~~ 69 (164)
+..++|+++..-+..+++-... ..|.+ .|.+|+-+ | |..|+.-+++.
T Consensus 17 d~~~s~e~L~~~v~~~c~~~~~----q~ft~kw~DEEGDp~tiSS~~EL~EA~rl 67 (83)
T cd06404 17 DPSISLEELCNEVRDMCRFHND----QPFTLKWIDEEGDPCTISSQMELEEAFRL 67 (83)
T ss_pred CCCcCHHHHHHHHHHHhCCCCC----CcEEEEEECCCCCceeecCHHHHHHHHHH
Confidence 3478899988877766542211 12332 24444443 2 35566655554
No 200
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=22.75 E-value=1.4e+02 Score=18.54 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy5340 121 VTNRVDSVFKKMDKNQDGVVTLDEFLECCLN 151 (164)
Q Consensus 121 ~~~~~~~~f~~~D~d~~g~Is~~E~~~~l~~ 151 (164)
..+..+.+-++++.-...-|+++|++.+...
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444444444444444456999999887643
No 201
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=22.71 E-value=1.8e+02 Score=19.23 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHhcCCCCCCcccHHHHHHHH
Q psy5340 127 SVFKKMDKNQDGVVTLDEFLECC 149 (164)
Q Consensus 127 ~~f~~~D~d~~g~Is~~E~~~~l 149 (164)
.-+..+|.++.=.+-++||+..+
T Consensus 94 ~dls~Yde~~AWP~liDeFVe~~ 116 (117)
T PF03556_consen 94 EDLSNYDEEGAWPSLIDEFVEWL 116 (117)
T ss_dssp CCHCC--TTSSS-HHHHHHHHHH
T ss_pred ccccCCCCCCCCcHHHHHHHHHh
Confidence 34555555555455566665544
No 202
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.45 E-value=3.6e+02 Score=20.65 Aligned_cols=87 Identities=10% Similarity=0.052 Sum_probs=46.4
Q ss_pred CCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcC
Q psy5340 54 GDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMD 133 (164)
Q Consensus 54 ~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D 133 (164)
-||.|+..|+. .++.+...++..+........+++... ....++.+|...+...+... ....+..+..+|...=
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k---~~~~~l~~~~~~~~~~~~~r--~~l~~~lL~~l~~vA~ 141 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGK---EPDFPLREKLRQFRSVCGGR--FDLLRMFLEIQIQAAF 141 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHH
Confidence 47999999999 667766666665443333333444332 22356677776665333100 0111222345555544
Q ss_pred CCCCCcccHHHHHHH
Q psy5340 134 KNQDGVVTLDEFLEC 148 (164)
Q Consensus 134 ~d~~g~Is~~E~~~~ 148 (164)
-||.++..|-.-+
T Consensus 142 --ADG~l~~~E~~~L 154 (267)
T PRK09430 142 --ADGSLHPNERQVL 154 (267)
T ss_pred --hcCCCCHHHHHHH
Confidence 3577887774433
No 203
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.21 E-value=1.1e+02 Score=14.94 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=11.0
Q ss_pred CCcccHHHHHHHHHH
Q psy5340 55 DGRITREEMTNIVTA 69 (164)
Q Consensus 55 ~G~I~~~e~~~~l~~ 69 (164)
.|.||.+||...-..
T Consensus 14 ~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 14 KGEISEEEYEQKKAR 28 (31)
T ss_pred cCCCCHHHHHHHHHH
Confidence 588888888776554
No 204
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=20.83 E-value=4.7e+02 Score=22.42 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred cHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhcccchhhhccchh-------hhhhhhccchhhhHHHHHHHHHH
Q psy5340 38 SVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSV-------TNRVDSVFKMTNIVTAIYELMGK 110 (164)
Q Consensus 38 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~~~~ 110 (164)
...+.++++|+.=| .-...++.++|++++.--.. +|+.|..-+..-+. -..+....++.|..++|.....+
T Consensus 365 T~nDA~RELYrYSd-yLPK~L~~~~f~~IVdG~s~-tgKcPPQViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~ass 442 (624)
T PF05819_consen 365 TENDAMRELYRYSD-YLPKNLSLEDFKQIVDGDSK-TGKCPPQVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVASS 442 (624)
T ss_pred chhHHHHHHHHhhh-ccccccCHHHHHhHhcCccc-cCCCCHHHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHHHh
Q ss_pred hhhhhhcccchHHHHHHHHHhcCCCCCC-cccHHHHHHHHhc---ChHHHHHHhhh
Q psy5340 111 FAETVLEDGSVTNRVDSVFKKMDKNQDG-VVTLDEFLECCLN---DEDIKRSIQVF 162 (164)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~f~~~D~d~~g-~Is~~E~~~~l~~---~~~~~~~~~~~ 162 (164)
.++--..+....+.+..--..|= |+| .|+.+-+..+... +|.+++.-.++
T Consensus 443 ~m~LT~~ElkTL~Tin~nqd~FF--g~G~~ltrdKLa~ma~D~~~~p~Vr~AA~qL 496 (624)
T PF05819_consen 443 SMHLTAPELKTLDTINSNQDAFF--GDGKELTRDKLASMADDKSLDPEVREAAKQL 496 (624)
T ss_pred hcccChHHHHHHHHhhhchhhhh--CCccccCHHHHHHhhcCcccCHHHHHHHHHH
No 205
>PF14164 YqzH: YqzH-like protein
Probab=20.31 E-value=2.1e+02 Score=16.99 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCCC-CCCcccHHHHHHHHhc
Q psy5340 120 SVTNRVDSVFKKMDKN-QDGVVTLDEFLECCLN 151 (164)
Q Consensus 120 ~~~~~~~~~f~~~D~d-~~g~Is~~E~~~~l~~ 151 (164)
+.++.+...|+.|..| ..-.+|..||..+...
T Consensus 5 ~I~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~ 37 (64)
T PF14164_consen 5 LIEKMIINCLRQYGYDVECMPLSDEEWEELCKH 37 (64)
T ss_pred HHHHHHHHHHHHhCCcccCCCCCHHHHHHHHHH
Confidence 4677789999999887 6778899999887765
No 206
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=20.07 E-value=2.7e+02 Score=18.33 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=45.1
Q ss_pred CCCcccHHHHHHHHHHHHHHhcccchhhhccchhhhhhhhccchhhhHHHHHHHHHHhhhhhhcccchHHHHHHHHHhcC
Q psy5340 54 GDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMD 133 (164)
Q Consensus 54 ~~G~I~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~D 133 (164)
-||.|+.+|...+...+....+..+... ..+...+........++.++...+..... .......+..++...-
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~r~~ll~~l~~ia~ 108 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEA---EELIELADELKQEPIDLEELLRELRDSLS----PEEREDLLRMLIAIAY 108 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHH---HHHHHHHCHHHHHCCHHHHHHHHHCTS------HHHHHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHH---HHHHHHHHHHHhccccHHHHHHHHHHhhc----hHHHHHHHHHHHHHHh
Confidence 4799999999988887544344333222 24444555555556777777766642110 1224456777777777
Q ss_pred CCCCCcccHHH
Q psy5340 134 KNQDGVVTLDE 144 (164)
Q Consensus 134 ~d~~g~Is~~E 144 (164)
-| |.++..|
T Consensus 109 AD--G~~~~~E 117 (140)
T PF05099_consen 109 AD--GEISPEE 117 (140)
T ss_dssp CT--TC-SCCH
T ss_pred cC--CCCCHHH
Confidence 65 5565444
Done!