RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5340
(164 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 47.3 bits (113), Expect = 3e-07
Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 47/132 (35%)
Query: 25 QDFIQGLSV-LSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83
+F+ +SV L RG EE+LR F L+D + DG I+ E+ ++ ++ E
Sbjct: 75 PEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE----------- 123
Query: 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLD 143
++++ V+ + K+ D++ DG + +
Sbjct: 124 ------------RLSD-----------------------EEVEKLLKEYDEDGDGEIDYE 148
Query: 144 EFLECCLNDEDI 155
EF + + I
Sbjct: 149 EFKKLIKDSPTI 160
Score = 38.8 bits (91), Expect = 3e-04
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAI-YELMGKFAETVLEDGSVTNRVDSV-FKMT 98
++L+ F L+D + DG I R E+ I+ ++ + + E+ N ++V F
Sbjct: 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGN--ETVDFP-- 75
Query: 99 NIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC------LND 152
+M L+ G + FK DK+ DG +++ E L+D
Sbjct: 76 ----EFLTVMSVK----LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSD 127
Query: 153 EDIKRSIQVFDT 164
E++++ ++ +D
Sbjct: 128 EEVEKLLKEYDE 139
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 40.6 bits (96), Expect = 1e-05
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 46/106 (43%)
Query: 42 KLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIV 101
+LR F L+D +GDG I+ +E+ + ++ E + +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSE------------------------- 35
Query: 102 TAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
+D + +++DK+ DG + +EFLE
Sbjct: 36 ---------------------EEIDEMIREVDKDGDGKIDFEEFLE 60
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVT 68
+ L L G EE++ D +GDG+I EE ++
Sbjct: 20 DELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
Score = 32.5 bits (75), Expect = 0.013
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 128 VFKKMDKNQDGVVTLDEFLECC------LNDEDIKRSIQVFDT 164
F+ DK+ DG ++ DE L++E+I I+ D
Sbjct: 5 AFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDK 47
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 33.1 bits (76), Expect = 0.008
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 42/101 (41%)
Query: 49 LYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELM 108
L D +GDG I EE+ ++ A+ +
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKL---------------------------------- 27
Query: 109 GKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC 149
D V +++ F ++DK+ DG ++ +EFLE
Sbjct: 28 --------TDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 26.9 bits (60), Expect = 1.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 34 LSRGSVEEKLRWTFTLYDINGDGRITREEMTNIV 67
L+ VEE + F D +GDGRI+ EE +
Sbjct: 27 LTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 31.2 bits (72), Expect = 0.016
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 42 KLRWTFTLYDINGDGRITREEMTNIVTAI 70
+L+ F L+D +GDG+I EE +++ A+
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 29.3 bits (67), Expect = 0.096
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLEC 148
+ F+ DK+ DG + +EF +
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKDL 25
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 31.3 bits (72), Expect = 0.019
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 124 RVDSVFKKMDKNQDGVVTLDEFLECC 149
+ FK+ DK+ DG ++ +EF E
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELL 26
Score = 29.7 bits (68), Expect = 0.059
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 42 KLRWTFTLYDINGDGRITREEMTNIVTAI 70
+L+ F +D +GDG+I+ EE ++ +
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 29.6 bits (68), Expect = 0.063
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 46 TFTLYDINGDGRITREEMTNIV 67
F +D NGDG+I++EE+ ++
Sbjct: 4 LFRQFDTNGDGKISKEELKRLL 25
Score = 28.4 bits (65), Expect = 0.16
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 125 VDSVFKKMDKNQDGVVTLDEF 145
+ +F++ D N DG ++ +E
Sbjct: 1 LKDLFRQFDTNGDGKISKEEL 21
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 32.0 bits (73), Expect = 0.11
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 47 FTLYDINGDGRITREE 62
F LYD++GDG ITREE
Sbjct: 340 FRLYDLDGDGFITREE 355
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 29.1 bits (66), Expect = 0.11
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 47 FTLYDINGDGRITREEMTNIVTAI 70
F L+D +GDG I+ EE+ + ++
Sbjct: 6 FKLFDKDGDGYISAEELRKALRSL 29
Score = 28.3 bits (64), Expect = 0.18
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 124 RVDSVFKKMDKNQDGVVTLDEFLECC 149
+ FK DK+ DG ++ +E +
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKAL 26
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLEC 148
VD + K +D N+DG V EFL
Sbjct: 53 VDKIMKDLDVNKDGKVDFQEFLVL 76
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 29.0 bits (66), Expect = 0.17
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLEC 148
VD +F++ D + DG ++ +EF
Sbjct: 26 VDILFREFDTDGDGKISFEEFCVL 49
Score = 25.9 bits (58), Expect = 2.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
++ + L++L EE++ F +D +GDG+I+ EE
Sbjct: 8 EELKRALALLGISLSEEEVDILFREFDTDGDGKISFEE 45
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 31.0 bits (70), Expect = 0.32
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 123 NRVDSVFKKMDKNQDGVVTLDE 144
N+ + +FK D N DGVVT+DE
Sbjct: 215 NKKEELFKAADLNGDGVVTIDE 236
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 28.6 bits (64), Expect = 1.1
Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 26 DFIQGLSVLSR----GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72
DF + L++++R EE+++ F ++D +G+G I+ E+ +++T + E
Sbjct: 65 DFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE 115
>gnl|CDD|227731 COG5444, COG5444, Uncharacterized conserved protein [Function
unknown].
Length = 565
Score = 29.0 bits (65), Expect = 1.1
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 116 LEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL-----ECCLNDEDIKRSIQVF 162
L+ + VDS K + + LD+ +++K I+
Sbjct: 139 LDTEDFKDEVDSARKHAKDTLEKLYKLDQEGMTLMAAVESKMQELKAIIRQL 190
>gnl|CDD|225512 COG2964, COG2964, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 220
Score = 28.8 bits (65), Expect = 1.2
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 65 NIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNR 124
N+ ++ + F +T + RV SV +++ + +L+ + V D ++N
Sbjct: 113 NMDLSLLVPVSAFLQTFMPTDETPKRVSSVNFASSVEDLVAQLLEWTIQEVNADRLLSN- 171
Query: 125 VDSVFKKMDKNQDGVVTLDE 144
KN++ V L E
Sbjct: 172 -------NAKNREIVKALYE 184
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 28.5 bits (64), Expect = 1.8
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 5 DKWERTLSLLSFAEIFPIFS------QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRI 58
+KW L F +F S ++F+Q L ++ + TF DGR
Sbjct: 288 EKWTEDL----FESLFGGKSPDEVTLKEFMQALGRFEALIPKDPSQRTFGGLKRGPDGRF 343
Query: 59 TREEMTNIVTAIYE 72
E++ I+ E
Sbjct: 344 RDEDLVRILKDSIE 357
>gnl|CDD|240157 cd05031, S-100A10_like, S-100A10_like: S-100A10 domain found in
proteins similar to S100A10. S100A10 is a member of the
S100 family of EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1_like group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins are expressed exclusively in vertebrates,
and are implicated in intracellular and extracellular
regulatory activities. A unique feature of S100A10 is
that it contains mutation in both of the calcium binding
sites, making it calcium insensitive. S100A10 has been
detected in brain, heart, gastrointestinal tract,
kidney, liver, lung, spleen, testes, epidermis, aorta,
and thymus. Structural data supports the homo- and
hetero-dimeric as well as hetero-tetrameric nature of
the protein. S100A10 has multiple binding partners in
its calcium free state and is therefore involved in many
diverse biological functions.
Length = 94
Score = 26.6 bits (59), Expect = 2.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFL 146
VD + K +D+N+DG V +EF+
Sbjct: 53 VDKIMKDLDQNRDGKVNFEEFV 74
>gnl|CDD|240156 cd05030, calgranulins, Calgranulins: S-100 domain found in proteins
belonging to the Calgranulin subgroup of the S100 family
of EF-hand calcium-modulated proteins, including S100A8,
S100A9, and S100A12 . Note that the S-100 hierarchy, to
which this Calgranulin group belongs, contains only
S-100 EF-hand domains, other EF-hands have been modeled
separately. These proteins are expressed mainly in
granulocytes, and are involved in inflammation, allergy,
and neuritogenesis, as well as in host-parasite
response. Calgranulins are modulated not only by
calcium, but also by other metals such as zinc and
copper. Structural data suggested that calgranulins may
exist in multiple structural forms, homodimers, as well
as hetero-oligomers. For example, the S100A8/S100A9
complex called calprotectin plays important roles in the
regulation of inflammatory processes, wound repair, and
regulating zinc-dependent enzymes as well as microbial
growth.
Length = 88
Score = 26.5 bits (59), Expect = 2.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLE 147
+D +F+ +D NQDG ++ +EFL
Sbjct: 53 IDKIFEDLDTNQDGQLSFEEFLV 75
>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone
oxidoreductase. PIG3 p53-inducible quinone
oxidoreductase, a medium chain dehydrogenase/reductase
family member, acts in the apoptotic pathway. PIG3
reduces ortho-quinones, but its apoptotic activity has
been attributed to oxidative stress generation, since
overexpression of PIG3 accumulates reactive oxygen
species. PIG3 resembles the MDR family member quinone
reductases, which catalyze the reduction of quinone to
hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES.
These proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
have 2 tightly bound zinc atoms per subunit, a catalytic
zinc at the active site, and a structural zinc in a lobe
of the catalytic domain. NAD(H) binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 323
Score = 27.8 bits (63), Expect = 2.8
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 72 ELMGKFAETV---LEDGSVTNRVDSVFKMTNIVTAIYELM 108
L F E V G + +D VF + A + M
Sbjct: 274 ALAAAFREHVWPLFASGRIRPVIDKVFPLEEAAEA-HRRM 312
>gnl|CDD|204523 pfam10591, SPARC_Ca_bdg, Secreted protein acidic and rich in
cysteine Ca binding region. The SPARC_Ca_bdg domain of
Secreted Protein Acidic and Rich in Cysteine is
responsible for the anti-spreading activity of human
urothelial cells. It is rich in alpha-helices. This
extracellular calcium-binding domain contains two
EF-hands that each coordinates one Ca2+ ion, forming a
helix-loop-helix structure that not only drives the
conformation of the protein but is also necessary for
biological activity. The anti-spreading activity was
dependent on the coordination of Ca2+ by a Glu residue
at the Z position of EF-hand 2.
Length = 112
Score = 26.5 bits (59), Expect = 3.7
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 129 FKKMDKNQDGVVTLDEFLEC 148
FK D ++DG+++L E+ +C
Sbjct: 93 FKSCDADKDGLISLREWCKC 112
>gnl|CDD|218351 pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase. Members
of this family are thought to be Formiminotransferase-
cyclodeaminase enzymes EC:4.3.1.4. This domain is found
in the C-terminus of the bifunctional animal members of
the family.
Length = 176
Score = 26.4 bits (59), Expect = 7.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 61 EEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKM 97
EEM I+ EL + ED N V + +K+
Sbjct: 52 EEMKEILEKAEELREELLALADEDAEAFNAVMAAYKL 88
>gnl|CDD|182002 PRK09627, oorA, 2-oxoglutarate-acceptor oxidoreductase subunit
OorA; Reviewed.
Length = 375
Score = 26.2 bits (58), Expect = 9.3
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 117 EDGS-VTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDI 155
ED +D +F K++ +QD + +E++ L+D +I
Sbjct: 241 EDAKICGKLIDRLFNKIESHQDEIEEYEEYM---LDDAEI 277
>gnl|CDD|240150 cd05023, S-100A11, S-100A11: S-100A11 domain found in proteins
similar to S100A11. S100A11 is a member of the S-100
domain family within EF-hand Ca2+-binding proteins
superfamily. Note that the S-100 hierarchy, to which
this S-100A11 group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins exhibit unique patterns of tissue- and
cell type-specific expression and have been implicated
in the Ca2+-dependent regulation of diverse
physiological processes, including cell cycle
regulation, differentiation, growth, and metabolic
control . S100 proteins have also been associated with a
variety of pathological events, including neoplastic
transformation and neurodegenerative diseases such as
Alzheimer's, usually via over expression of the protein.
S100A11 is expressed in smooth muscle and other tissues
and involves in calcium-dependent membrane aggregation,
which is important for cell vesiculation . As is the
case for many other S100 proteins, S100A11 is homodimer,
which is able to form a heterodimer with S100B through
subunit exchange. Ca2+ binding to S100A11 results in a
conformational change in the protein, exposing a
hydrophobic surface that interacts with target proteins.
In addition to binding to annexin A1 and A6 S100A11
also interacts with actin and transglutaminase.
Length = 89
Score = 25.1 bits (55), Expect = 9.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 123 NRVDSVFKKMDKNQDGVVTLDEFL 146
+D + KK+D N DG + EFL
Sbjct: 52 GVLDRMMKKLDLNSDGQLDFQEFL 75
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 26.2 bits (58), Expect = 9.6
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 52 INGDGRITREEMTNIVTAIYELMGKFAE 79
ING GRI R N++ A+YE G+ AE
Sbjct: 6 INGFGRIGR----NVLRALYE-SGRRAE 28
>gnl|CDD|237911 PRK15106, PRK15106, nucleoside-specific channel-forming protein
Tsx; Provisional.
Length = 289
Score = 26.3 bits (58), Expect = 9.9
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 2 NTHDK--WERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFT---LYDI--NG 54
N++DK W+ L F EI P FS D + G LS G +E W F +YD+ N
Sbjct: 86 NSNDKGIWDHGSPL--FMEIEPRFSIDKLTGTD-LSFGPFKE---WYFANNYIYDMGRNK 139
Query: 55 DGR 57
D R
Sbjct: 140 DSR 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.385
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,213,206
Number of extensions: 747439
Number of successful extensions: 844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 67
Length of query: 164
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 74
Effective length of database: 6,945,742
Effective search space: 513984908
Effective search space used: 513984908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.6 bits)