RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5340
(164 letters)
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 101 bits (254), Expect = 1e-27
Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 34/143 (23%)
Query: 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETV 81
+ +DFI+GLS+L RG+V+EKL W F LYDIN DG IT+EE
Sbjct: 119 VSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEE------------------- 159
Query: 82 LEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVT 141
M +I+ AIY++MGK VL++ + V++ F+KMDKN+DGVVT
Sbjct: 160 ---------------MLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVT 204
Query: 142 LDEFLECCLNDEDIKRSIQVFDT 164
+DEF+E C DE+I RS+Q+F+
Sbjct: 205 IDEFIESCQKDENIMRSMQLFEN 227
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 100 bits (249), Expect = 6e-27
Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 34/143 (23%)
Query: 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETV 81
+ +DF+ LS+L RG+V EKLRWTF LYDIN DG I +EE
Sbjct: 106 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEE------------------- 146
Query: 82 LEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVT 141
M +IV AIY++MGK+ VL++ + VD F+KMDKN+DG+VT
Sbjct: 147 ---------------MMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVT 191
Query: 142 LDEFLECCLNDEDIKRSIQVFDT 164
LDEFLE C D++I RS+Q+F
Sbjct: 192 LDEFLESCQEDDNIMRSLQLFQN 214
Score = 31.1 bits (70), Expect = 0.13
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVT---AIYELMGKFA 78
I+ VL + + + F D N DG +T +E I + F
Sbjct: 154 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQ 213
Query: 79 ETVLED 84
++E
Sbjct: 214 NVMVEH 219
Score = 25.7 bits (56), Expect = 8.0
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLECCLN------DEDIKRSIQVFD 163
+F D Q G V ++F+ E ++ + ++D
Sbjct: 91 AHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYD 135
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 98.7 bits (246), Expect = 1e-26
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 29/139 (20%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
+++ L+++ RG++E KL+WTF +YD + +G I R+E+ +IV +IY+L + V
Sbjct: 79 LEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEA- 137
Query: 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
E + + VD +F +D+N DG ++L+E
Sbjct: 138 ----------------------------EQQGKLLTPEEVVDRIFLLVDENGDGQLSLNE 169
Query: 145 FLECCLNDEDIKRSIQVFD 163
F+E D+ + + +Q+
Sbjct: 170 FVEGARRDKWVMKMLQMDL 188
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 99.7 bits (248), Expect = 2e-26
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 34/143 (23%)
Query: 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETV 81
I +DF+ GLS+L RG+V EKL+W F LYDIN DG IT+EE
Sbjct: 146 IHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEE------------------- 186
Query: 82 LEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVT 141
M I+ +IY++MG+ +L + + V+ F+KMD+NQDGVVT
Sbjct: 187 ---------------MLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVT 231
Query: 142 LDEFLECCLNDEDIKRSIQVFDT 164
+DEFLE C DE+I S+Q+F+
Sbjct: 232 IDEFLETCQKDENIMNSMQLFEN 254
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 98.0 bits (244), Expect = 2e-26
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 34/140 (24%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
+FIQ LSV SRG+++EKLRW F LYD++ DG ITR E
Sbjct: 83 SEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNE---------------------- 120
Query: 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
M +IV AIY+++G E E+ + RVD +F MDKN DG +TL E
Sbjct: 121 ------------MLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQE 168
Query: 145 FLECCLNDEDIKRSIQVFDT 164
F E D I +++ ++D
Sbjct: 169 FQEGSKADPSIVQALSLYDG 188
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 97.2 bits (242), Expect = 2e-26
Identities = 60/143 (41%), Positives = 80/143 (55%), Gaps = 34/143 (23%)
Query: 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETV 81
+ +DF+ LS+L RG+V EKLRWTF LYDIN DG I +EE
Sbjct: 73 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEE------------------- 113
Query: 82 LEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVT 141
M +IV AIY++MGK+ VL++ + VD F+KMDKN+DG+VT
Sbjct: 114 ---------------MMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVT 158
Query: 142 LDEFLECCLNDEDIKRSIQVFDT 164
LDEFLE D++I RS+Q+F
Sbjct: 159 LDEFLESXQEDDNIMRSLQLFQN 181
Score = 30.9 bits (70), Expect = 0.12
Identities = 16/125 (12%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Query: 26 DFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDG 85
+ ++ L + + E + G + E I + +
Sbjct: 4 EGLEQLEAQTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFF--------PHGDAS 55
Query: 86 SVTNRVDSVFKMTNIVTA-IYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
+ + + + F T + + + + +L G+V ++ F D N+DG + +E
Sbjct: 56 TYAHYLFNAFDTTQTGSVKFEDFVTALS--ILLRGTVHEKLRWTFNLYDINKDGYINKEE 113
Query: 145 FLECC 149
++
Sbjct: 114 MMDIV 118
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 97.6 bits (243), Expect = 4e-26
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 40/136 (29%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
+FI ++++ + +E+KL+W F LYD +G+G I + E+ ++ A+ L G+
Sbjct: 77 LEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQ-------- 128
Query: 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
+ S ++ VF K+D N DG +TL+E
Sbjct: 129 --------------------------------QTLSPEEFINLVFHKIDINNDGELTLEE 156
Query: 145 FLECCLNDEDIKRSIQ 160
F+ D+D+ +
Sbjct: 157 FINGMAKDQDLLEIVY 172
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 95.3 bits (237), Expect = 2e-25
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 34/140 (24%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
++FI LSV SRG + +KL W F LYD++ +G I+ +E
Sbjct: 83 KEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDE---------------------- 120
Query: 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
M IV AIY+++G + ++ + RV+ +F MDKN+DG +TL+E
Sbjct: 121 ------------MLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEE 168
Query: 145 FLECCLNDEDIKRSIQVFDT 164
F E D I ++ ++D
Sbjct: 169 FCEGSKRDPTIVSALSLYDG 188
Score = 34.0 bits (78), Expect = 0.009
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 9/125 (7%)
Query: 23 FSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVL 82
SQD +Q L +R +E +W + G + + E I +
Sbjct: 8 LSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPF--------G 59
Query: 83 EDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTL 142
+ + V +VF + I A +V G + +++ F+ D + +G+++
Sbjct: 60 DPSAFAEYVFNVFD-ADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISY 118
Query: 143 DEFLE 147
DE L
Sbjct: 119 DEMLR 123
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 93.4 bits (232), Expect = 1e-24
Identities = 48/143 (33%), Positives = 68/143 (47%), Gaps = 34/143 (23%)
Query: 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETV 81
I ++FI LS SRG++EEKL W F LYD+N DG IT +E
Sbjct: 80 IHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDE------------------- 120
Query: 82 LEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVT 141
M IV ++Y++MG ++ + RV +FK MDKN+DG +T
Sbjct: 121 ---------------MLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYIT 165
Query: 142 LDEFLECCLNDEDIKRSIQVFDT 164
LDEF E D I ++ ++D
Sbjct: 166 LDEFREGSKVDPSIIGALNLYDG 188
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 92.2 bits (229), Expect = 3e-24
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 34/137 (24%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
++FI LSV SRG +E+KL+W F++YD++G+G I++ E
Sbjct: 83 REFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAE---------------------- 120
Query: 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
M IV AIY+++ + ++ + R + +F++MD N+DG ++L+E
Sbjct: 121 ------------MLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEE 168
Query: 145 FLECCLNDEDIKRSIQV 161
F+ +D I R +Q
Sbjct: 169 FIRGAKSDPSIVRLLQC 185
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 89.8 bits (223), Expect = 3e-23
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 39/138 (28%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
+++ LS++ +G V++KLRW F LYD++G+G I R E+ NI+ AI + E+
Sbjct: 72 MEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEE 131
Query: 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
+ VF K+D N DG ++L+E
Sbjct: 132 ---------------------------------------FTNMVFDKIDINGDGELSLEE 152
Query: 145 FLECCLNDEDIKRSIQVF 162
F+E DE + +
Sbjct: 153 FMEGVQKDEVLLDILTRS 170
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 88.5 bits (219), Expect = 1e-22
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 32/136 (23%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
++++ L + + G +KL W F+LYD++G+G I++ E+ IV AI++++ +L D
Sbjct: 91 KEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPD 150
Query: 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
++ + R + ++K KN D +T E
Sbjct: 151 --------------------------------DENTPEKRAEKIWKYFGKNDDDKLTEKE 178
Query: 145 FLECCLNDEDIKRSIQ 160
F+E L +++I R IQ
Sbjct: 179 FIEGTLANKEILRLIQ 194
Score = 38.4 bits (89), Expect = 4e-04
Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 13/129 (10%)
Query: 23 FSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVL 82
S++ ++ L + ++ S EE W + GRIT+++ +I +
Sbjct: 16 LSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFF----------- 64
Query: 83 EDGSVTNRVDSVFKM--TNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVV 140
D VF+ +N+ + A + G +++ F D + +G +
Sbjct: 65 PDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTI 124
Query: 141 TLDEFLECC 149
+ +E LE
Sbjct: 125 SKNEVLEIV 133
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 87.1 bits (216), Expect = 2e-22
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 38/138 (27%)
Query: 25 QDFIQGLSVLS-RGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83
+DF+ LSV S + + K + F ++D + DG + RE+++ +V
Sbjct: 81 EDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNC-------------- 126
Query: 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLD 143
L G+ +T L + +D++ ++ D ++DG + L
Sbjct: 127 -----------------------LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 163
Query: 144 EFLECCLNDEDIKRSIQV 161
EF D S ++
Sbjct: 164 EFQHVISRSPDFASSFKI 181
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 86.0 bits (213), Expect = 1e-21
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 39/138 (28%)
Query: 25 QDFIQGLSVLS-RGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83
+F++ L V V EK+++ F LYD+ G I REE+ +V A+
Sbjct: 94 GEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALL------------ 141
Query: 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLD 143
+E VL + + VD F + D+ DG + +D
Sbjct: 142 --------------------------HESELVLSEDMIEVMVDKAFVQADRKNDGKIDID 175
Query: 144 EFLECCLNDEDIKRSIQV 161
E+ + + + +++ +
Sbjct: 176 EWKDFVSLNPSLIKNMTL 193
Score = 30.1 bits (68), Expect = 0.20
Identities = 15/71 (21%), Positives = 27/71 (38%)
Query: 14 LSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYEL 73
+ E+ + + VLS +E + F D DG+I +E + V+ L
Sbjct: 128 IEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNPSL 187
Query: 74 MGKFAETVLED 84
+ L+D
Sbjct: 188 IKNMTLPYLKD 198
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 86.4 bits (214), Expect = 1e-21
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 39/138 (28%)
Query: 25 QDFIQGLSVLS-RGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83
++F + LSV +++K+ ++F LYD+ G I R+E+ +V A G
Sbjct: 105 EEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESG-------- 156
Query: 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLD 143
L+D + + +D F++ D DG + +
Sbjct: 157 ------------------------------MNLKDTVIEDIIDKTFEEADTKHDGKIDKE 186
Query: 144 EFLECCLNDEDIKRSIQV 161
E+ L + +++ +
Sbjct: 187 EWRSLVLRHPSLLKNMTL 204
Score = 29.0 bits (65), Expect = 0.50
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 14 LSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
+ E+ + + L +E+ + TF D DG+I +EE
Sbjct: 139 IERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEE 187
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 79.5 bits (196), Expect = 4e-19
Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 38/135 (28%)
Query: 25 QDFIQGLSVLS-RGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83
+DF+ LSV S + + K + F ++D + DG + RE+++ +V
Sbjct: 112 EDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNC-------------- 157
Query: 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLD 143
L G+ +T L + +D++ ++ D ++DG + L
Sbjct: 158 -----------------------LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 194
Query: 144 EFLECCLNDEDIKRS 158
EF D S
Sbjct: 195 EFQHVISRSPDFASS 209
Score = 29.4 bits (66), Expect = 0.37
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 34 LSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKF 77
LS +++ + DI+ DG I E ++++ + F
Sbjct: 167 LSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSF 210
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 62.6 bits (152), Expect = 1e-13
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 30/111 (27%)
Query: 43 LRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVT 102
+ F L+DIN DG + +E+ + T E +
Sbjct: 22 PKTFFILHDINSDGVLDEQELEALFTKELEKV---------------------------- 53
Query: 103 AIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDE 153
Y+ + + + + V K +D NQD +VTL+EFL E
Sbjct: 54 --YDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKE 102
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 62.8 bits (152), Expect = 1e-12
Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 36/128 (28%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
F G+ L + +E+K R+ F + G + + ++ ++
Sbjct: 152 LSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIP---------- 200
Query: 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
+ E ++ V S F+ N +
Sbjct: 201 -----------------RQLGE------VASFGGSNIEPSVRSCFQFA--NNKPEIEAAL 235
Query: 145 FLECCLND 152
FL+ +
Sbjct: 236 FLDWMRLE 243
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 60.2 bits (146), Expect = 6e-12
Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 57/145 (39%)
Query: 25 QDFIQGLSVL----------------SRGSVEEKLRWTFTLYDINGDGRITREEMTNIVT 68
+ F++ L+ S KL + F LYD++ D +I+R+E+ ++
Sbjct: 81 RGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLR 140
Query: 69 AIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSV 128
+ + + D + + D
Sbjct: 141 MMVGVN-----------------------------------------ISDEQLGSIADRT 159
Query: 129 FKKMDKNQDGVVTLDEFLECCLNDE 153
++ D++ D ++ EF++ +
Sbjct: 160 IQEADQDGDSAISFTEFVKVLEKVD 184
Score = 32.1 bits (73), Expect = 0.047
Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 13/129 (10%)
Query: 26 DFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMG-KFAETVLE- 83
+ I+ + S + L FT D +G ++RE+ I EL + ++
Sbjct: 15 EEIKKETGFSHSQITR-LYSRFTSLDKGENGTLSREDFQR----IPELAINPLGDRIINA 69
Query: 84 -----DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDG 138
+ V R + + + K S +N++ F+ D ++D
Sbjct: 70 FFSEGEDQVNFR-GFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDD 128
Query: 139 VVTLDEFLE 147
++ DE L+
Sbjct: 129 KISRDELLQ 137
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 56.7 bits (137), Expect = 7e-11
Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 20/143 (13%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTN 99
E ++ FT +D +G+G I R + + A+ G A + +
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Query: 100 IV--------------TAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEF 145
I T + + + + + D + DG VT+ +
Sbjct: 63 IADRDGDQRITREEFVTGAVKRLRDKPDR--FAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 146 LECC----LNDEDIKRSIQVFDT 164
+ ++ +++ DT
Sbjct: 121 ARALTAFGVPEDLARQAAAALDT 143
Score = 35.9 bits (83), Expect = 0.002
Identities = 17/104 (16%), Positives = 26/104 (25%), Gaps = 19/104 (18%)
Query: 51 DINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKM-----TNIVTA-- 103
D +GD RITREE + + + + VT
Sbjct: 65 DRDGDQRITREEFVTGAVKRLRDKPDRFAEMARP-----FLHAALGVADTDGDGAVTVAD 119
Query: 104 IYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
+ F +D + DG V E +
Sbjct: 120 TARALTAFGVPEDL-------ARQAAAALDTDGDGKVGETEIVP 156
Score = 26.2 bits (58), Expect = 4.1
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 37 GSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69
G E+ R D +GDG++ E+
Sbjct: 128 GVPEDLARQAAAALDTDGDGKVGETEIVPAFAR 160
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 55.1 bits (133), Expect = 3e-10
Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 17/142 (11%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTN 99
++L+ F +D +G+G + R + I E GK A +
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65
Query: 100 IV-------------TAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
+ E + + + V + DKN DG + DEF
Sbjct: 66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFA 125
Query: 147 ECC----LNDEDIKRSIQVFDT 164
++ + + DT
Sbjct: 126 AWLTALGMSKAEAAEAFNQVDT 147
Score = 34.3 bits (79), Expect = 0.008
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 18/104 (17%)
Query: 51 DINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKM-----TNIVTA-- 103
+ DG +T E+ + L+ + E + V + M + A
Sbjct: 68 GVGSDGSLTEEQF---IRVTENLIFEQGEASFNRV-LGPVVKGIVGMCDKNADGQINADE 123
Query: 104 IYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
+ + E F ++D N +G ++LDE L
Sbjct: 124 FAAWLTALGMSKAE-------AAEAFNQVDTNGNGELSLDELLT 160
Score = 25.1 bits (55), Expect = 9.4
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 37 GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIY 71
G + + F D NG+G ++ +E+ V +
Sbjct: 132 GMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFH 166
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 54.5 bits (131), Expect = 5e-10
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 19/144 (13%)
Query: 40 EEKLRWTF-TLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMT 98
++K+++TF D+N DG I + +++T E+ + D +
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLK 66
Query: 99 NI--------------VTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
+ + + NR+ +FK MD + DG+V L+E
Sbjct: 67 GRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEE 126
Query: 145 FLECC----LNDEDIKRSIQVFDT 164
F C L D+ V
Sbjct: 127 FQNYCKNFQLQCADVPAVYNVITD 150
Score = 42.6 bits (100), Expect = 9e-06
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 36 RGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVF 95
+ S+E++ R DIN D ++ EE + + + NR+ +F
Sbjct: 55 QASLEDEWRDLKGRADINKDDVVSWEEY---LAMWEKTIATCKSVADLPAWCQNRIPFLF 111
Query: 96 KMTNI-------VTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
K ++ + F + V +V+ + L+ + E
Sbjct: 112 KGMDVSGDGIVDLEEFQNYCKNFQLQCAD-------VPAVYNVITDGGKVTFDLNRYKE 163
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 54.8 bits (132), Expect = 5e-10
Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 20/141 (14%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNI 100
+L F +D++ DG++ +E+ + + T + + + V F +
Sbjct: 36 SRLYKRFDTFDLDSDGKMEMDEV---LYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGV 92
Query: 101 -----------VTAIYELMG--KFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
V A + E E + +S + +D + DG V +DE
Sbjct: 93 EPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKT 152
Query: 148 CC----LNDEDIKRSIQVFDT 164
+ E + DT
Sbjct: 153 MMKAFDVPQEAAYTFFEKADT 173
Score = 34.4 bits (79), Expect = 0.008
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKM-- 97
+ +R F + + RE+ E + E + +S + +
Sbjct: 80 RDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERR-GEPSLIALLSNSYYDVLD 138
Query: 98 ---TNIVTA--IYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
V + +M F + F+K D ++ G + E +
Sbjct: 139 DDGDGTVDVDELKTMMKAFDVPQEA-------AYTFFEKADTDKSGKLERTELVH 186
Score = 32.1 bits (73), Expect = 0.053
Identities = 8/55 (14%), Positives = 22/55 (40%)
Query: 16 FAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70
+ E +F++ + + + + D +GDG + +E+ ++ A
Sbjct: 103 WVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAF 157
Score = 28.2 bits (63), Expect = 1.0
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 37 GSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIY 71
+E F D + G++ R E+ ++ +
Sbjct: 158 DVPQEAAYTFFEKADTDKSGKLERTELVHLFRKFW 192
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 51.1 bits (122), Expect = 5e-09
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 34/113 (30%)
Query: 35 SRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSV 94
+ S +E F ++D +G+ + E++ +T +++ G ++ +
Sbjct: 62 AEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSE---------- 111
Query: 95 FKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
++ + N +D V + DKN DG + EF +
Sbjct: 112 ----------------------DE--LINIIDGVLRDDDKNNDGYIDYAEFAK 140
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 50.6 bits (121), Expect = 1e-08
Identities = 18/144 (12%), Positives = 39/144 (27%), Gaps = 19/144 (13%)
Query: 40 EEKLRWTF-TLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMT 98
K+ F T YD N DG I ++ + I L + + + +
Sbjct: 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLR 70
Query: 99 NI--------------VTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
+ E + + +T ++ +F D + D ++ E
Sbjct: 71 KYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHE 130
Query: 145 FLECC----LNDEDIKRSIQVFDT 164
+ + D +
Sbjct: 131 YSTVYMSYGIPKSDCDAAFDTLSD 154
Score = 42.5 bits (100), Expect = 1e-05
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 51 DINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKM-----TNIVTAIY 105
D N D ++T+EE + E + + +T ++ +F + NI+ +
Sbjct: 74 DENEDEQVTKEEW---LKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDK-H 129
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
E + + D+ F + +VT + F
Sbjct: 130 EYSTVYMSYGIPKSDC----DAAFDTLSDGGKTMVTREIFAR 167
Score = 26.7 bits (59), Expect = 3.4
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 37 GSVEEKLRWTFTLYDINGDGRITREEMTNIVT 68
G + F G +TRE + T
Sbjct: 139 GIPKSDCDAAFDTLSDGGKTMVTREIFARLWT 170
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 49.7 bits (119), Expect = 3e-08
Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 16/139 (11%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRV-------- 91
K++ D+ GDG I+RE+ I I ++ AE E RV
Sbjct: 13 LRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAP 72
Query: 92 DSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC-- 149
+ + + K E + ++ +D ++DG V+L EF
Sbjct: 73 GVRISVEEAAVNATDSLLKMKGE--EKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQA 130
Query: 150 ----LNDEDIKRSIQVFDT 164
L D+ D
Sbjct: 131 VGPDLTDDKAITCFNTLDF 149
Score = 36.6 bits (85), Expect = 0.001
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 17/116 (14%)
Query: 39 VEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKM- 97
++ + RI+ EE + + K E + ++
Sbjct: 57 TRQEFLRVADQLGLAPGVRISVEEA---AVNATDSLLKMKGE--EKAMAVIQSLIMYDCI 111
Query: 98 ----TNIVTA--IYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
V+ + + +D + + F +D N++G ++ DEFL
Sbjct: 112 DTDKDGYVSLPEFKAFLQAVGPDLTDD-----KAITCFNTLDFNKNGQISRDEFLV 162
Score = 30.1 bits (68), Expect = 0.26
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 1 MNTHDKWERTLSLLSFAEIFPIF---------SQDFIQGLSVLSRGSVEEKLRWTFTLYD 51
+ E+ ++++ ++ +F L + ++K F D
Sbjct: 89 LLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLD 148
Query: 52 INGDGRITREEMTNIVTAIY 71
N +G+I+R+E V
Sbjct: 149 FNKNGQISRDEFLVTVNDFL 168
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 49.0 bits (117), Expect = 6e-08
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 41/113 (36%)
Query: 35 SRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSV 94
S KL + F LYD++ DG+I+R EM ++ ++G
Sbjct: 108 PLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRL---MVGVQ----------------- 147
Query: 95 FKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
+ + + N D ++ D++ DG V+ EF +
Sbjct: 148 ---------------------VTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179
Score = 31.6 bits (72), Expect = 0.067
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 16/131 (12%)
Query: 26 DFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMG-KFAETVLE- 83
D I+ + S+ S+ L F D N G ++R + + I L + ++E
Sbjct: 15 DSIRRETGFSQASLLR-LHHRFRALDRNKKGYLSRMD----LQQIGALAVNPLGDRIIES 69
Query: 84 -----DGSVTNR--VDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQ 136
V V + + E S N++ F+ D ++
Sbjct: 70 FFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPE--PLNSRRNKLHYAFQLYDLDR 127
Query: 137 DGVVTLDEFLE 147
DG ++ E L+
Sbjct: 128 DGKISRHEMLQ 138
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 48.6 bits (116), Expect = 8e-08
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 19/142 (13%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIY-----------ELMGKFAETVLEDGSVTN 89
+ + F D+N +G+I+ +EM + I + E G+
Sbjct: 16 GRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVE-AFFGGAGMK 74
Query: 90 RVDSV-FKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEF--- 145
+ E + D++F +DK+Q+G +TLDE+
Sbjct: 75 YGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAY 134
Query: 146 ---LECCLNDEDIKRSIQVFDT 164
+ ED + + +V D
Sbjct: 135 TKAAGIIQSSEDCEETFRVCDI 156
Score = 30.9 bits (70), Expect = 0.12
Identities = 15/132 (11%), Positives = 33/132 (25%), Gaps = 46/132 (34%)
Query: 16 FAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMG 75
+ E + + D ++ + + F + D + +G IT +E A
Sbjct: 84 YIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGI--- 140
Query: 76 KFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKN 135
+ E+ F+ D +
Sbjct: 141 IQSSEDCEE-------------------------------------------TFRVCDID 157
Query: 136 QDGVVTLDEFLE 147
+ G + +DE
Sbjct: 158 ESGQLDVDEMTR 169
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 49.3 bits (117), Expect = 9e-08
Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 10/145 (6%)
Query: 14 LSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYEL 73
+S AE+ F+Q + ++E ++D N DGR+ ++ I+
Sbjct: 121 ISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENF 180
Query: 74 MGKFAETVLEDGSVTNRVDSVFKM----------TNIVTAIYELMGKFAETVLEDGSVTN 123
+ +F + +F V + M + + G +
Sbjct: 181 LLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDK 240
Query: 124 RVDSVFKKMDKNQDGVVTLDEFLEC 148
+ + D N+DG + E C
Sbjct: 241 FRECLLTHCDMNKDGKIQKSELALC 265
Score = 39.7 bits (92), Expect = 2e-04
Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 18/150 (12%)
Query: 10 TLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69
L + A + ++F+ + + + YD + G I+ E+ N +
Sbjct: 73 RLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKD 132
Query: 70 IYELMGKFAETVLEDGSVTNRVDSVFK--------------MTNIVTAIYELMGKFAETV 115
+ + + + D++ K + I+ + +F
Sbjct: 133 ----LFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDA 188
Query: 116 LEDGSVTNRVDSVFKKMDKNQDGVVTLDEF 145
+ +F D ++ G + E
Sbjct: 189 SSQVERKRDFEKIFAHYDVSRTGALEGPEV 218
Score = 33.5 bits (76), Expect = 0.020
Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 18/128 (14%)
Query: 32 SVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRV 91
S + + +D + +G I +E+ + ++ K ++
Sbjct: 3 SAFANLDAAG-FLQIWQHFDADDNGYIEGKELDD---FFRHMLKKLQPKDKITDERVQQI 58
Query: 92 ------------DSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVD--SVFKKMDKNQD 137
D ++ + I F + + N V+ +++K D +
Sbjct: 59 KKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSS 118
Query: 138 GVVTLDEF 145
G ++ E
Sbjct: 119 GYISAAEL 126
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 44.3 bits (105), Expect = 2e-06
Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 40/148 (27%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAI--------------YELMGKFAETVLEDG 85
+K++ F D + DG ITR + ++ + + + L
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64
Query: 86 SVTNRVD-----SVFKMTNIVTAIYELMGKFAETVLE------DGSVT------------ 122
+ +D + K ++ D +++
Sbjct: 65 AGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG 124
Query: 123 ---NRVDSVFKKMDKNQDGVVTLDEFLE 147
+ F +D N DG+++L+EF+
Sbjct: 125 LDKTMAPASFDAIDTNNDGLLSLEEFVI 152
Score = 26.6 bits (59), Expect = 3.0
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 37 GSVEEKLRWTFTLYDINGDGRITREEMTNIV 67
G + +F D N DG ++ EE
Sbjct: 124 GLDKTMAPASFDAIDTNNDGLLSLEEFVIAG 154
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 45.1 bits (107), Expect = 3e-06
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 28/139 (20%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFK---- 96
++L F D NGDG++ ++E+ Y ++ F + E +V VD++ K
Sbjct: 355 KELTDIFKKLDKNGDGQLDKKEL----IEGYNVLRNFKNELGELKNVEEEVDNILKEVDF 410
Query: 97 -------MTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC 149
+ ++ + F+E L F D ++ G +T +E
Sbjct: 411 DKNGYIEYSEFISVCMDKQILFSEERLR---------RAFNLFDTDKSGKITKEELANLF 461
Query: 150 ----LNDEDIKRSIQVFDT 164
++++ + D
Sbjct: 462 GLTSISEKTWNDVLGEADQ 480
Score = 35.4 bits (82), Expect = 0.005
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 48/108 (44%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTN 99
EE+LR F L+D + G+IT+EE + L G
Sbjct: 434 EERLRRAFNLFDTDKSGKITKEE-------LANLFG------------------------ 462
Query: 100 IVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
+ V + D+N+D ++ DEF+
Sbjct: 463 -----------------LTSISEKTWNDVLGEADQNKDNMIDFDEFVS 493
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 45.1 bits (107), Expect = 3e-06
Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 28/139 (20%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFK---- 96
++L F D NGDG++ R+E+ Y + V + + + VD++
Sbjct: 346 KELTDIFRHIDKNGDGQLDRQEL----IDGYSKLSGEEVAVFDLPQIESEVDAILGAADF 401
Query: 97 -------MTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC 149
+ VT + ++ LE S F+K D++ +G +++DE
Sbjct: 402 DRNGYIDYSEFVTVAMDRKSLLSKDKLE---------SAFQKFDQDGNGKISVDELASVF 452
Query: 150 ----LNDEDIKRSIQVFDT 164
L + K I D+
Sbjct: 453 GLDHLESKTWKEMISGIDS 471
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 43.4 bits (103), Expect = 4e-06
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 42/124 (33%)
Query: 25 QDFIQGLSVLS-RGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83
++FI+G+S S +G E+KLR+ F +YD++ DG I+ E+ +
Sbjct: 58 KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQV----------------- 100
Query: 84 DGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLD 143
+ L+D + VD DK+ DG ++ +
Sbjct: 101 ------------------------LKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFE 136
Query: 144 EFLE 147
EF
Sbjct: 137 EFCA 140
Score = 27.2 bits (61), Expect = 1.6
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 129 FKKMDKNQDGVVTLDEFLE--CCLNDEDIKRSIQVFDT 164
FKK+D + G ++++EF+ + ++R I +FDT
Sbjct: 12 FKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDT 49
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 43.9 bits (104), Expect = 7e-06
Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 28/143 (19%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVT--NRVDSVFK-- 96
++L F D N DG + R+E+ L G + +++++ T +++DS+
Sbjct: 331 KQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLL 390
Query: 97 ---------MTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
+ + + + + +E FK DK+ G ++ E +
Sbjct: 391 DMDGSGSIEYSEFIASAIDRTILLSRERME---------RAFKMFDKDGSGKISTKELFK 441
Query: 148 CC------LNDEDIKRSIQVFDT 164
+ E+++ I+ D
Sbjct: 442 LFSQADSSIQMEELESIIEQVDN 464
Score = 35.0 bits (81), Expect = 0.007
Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 46/122 (37%)
Query: 26 DFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDG 85
+FI + E++ F ++D +G G+I+ +E +++L + ++ +
Sbjct: 402 EFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKE-------LFKLFSQADSSIQME- 453
Query: 86 SVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEF 145
++S+ +++D N+DG V +EF
Sbjct: 454 --------------------------------------ELESIIEQVDNNKDGEVDFNEF 475
Query: 146 LE 147
+E
Sbjct: 476 VE 477
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 43.6 bits (103), Expect = 7e-06
Identities = 14/125 (11%), Positives = 30/125 (24%), Gaps = 47/125 (37%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTN 99
L F D N +G ++R+E +
Sbjct: 187 LAALVADFRKIDTNSNGTLSRKEFREHFVRLGF--------------------------- 219
Query: 100 IVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSI 159
+ D++F+ D+++ V E++ L ++
Sbjct: 220 --------------------DKKSVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILY 259
Query: 160 QVFDT 164
D
Sbjct: 260 AFADF 264
Score = 36.7 bits (85), Expect = 0.002
Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 23/134 (17%)
Query: 38 SVEEK--LRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVF 95
S E+ LR F ++G G+ + +++ + + E L+ V D+
Sbjct: 117 SEEDTNILRQLFLSSAVSGSGKFSFQDLK---QVLAKYADTIPEGPLKKLFVMVENDTKG 173
Query: 96 KMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLN---- 151
+M+ + + + F+K+D N +G ++ EF E +
Sbjct: 174 RMS---------YITLVAVAND----LAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD 220
Query: 152 -DEDIKRSIQVFDT 164
+ D
Sbjct: 221 KKSVQDALFRYADE 234
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 43.5 bits (103), Expect = 9e-06
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 25/139 (17%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFK---- 96
++L F D NGDG++ R E+ + + G+ ++L+ +V + VD V
Sbjct: 335 KELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQ-DASMLDASAVEHEVDQVLDAVDF 393
Query: 97 -------MTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC 149
+ VT + + LE F+ D + G ++ E
Sbjct: 394 DKNGYIEYSEFVTVAMDRKTLLSRERLE---------RAFRMFDSDNSGKISSTELATIF 444
Query: 150 ----LNDEDIKRSIQVFDT 164
++ E K + D
Sbjct: 445 GVSDVDSETWKSVLSEVDK 463
Score = 34.7 bits (80), Expect = 0.009
Identities = 20/122 (16%), Positives = 34/122 (27%), Gaps = 48/122 (39%)
Query: 26 DFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDG 85
+F+ E+L F ++D + G+I+ E + + G
Sbjct: 403 EFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTE-------LATIFG---------- 445
Query: 86 SVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEF 145
+ SV ++DKN DG V DEF
Sbjct: 446 -------------------------------VSDVDSETWKSVLSEVDKNNDGEVDFDEF 474
Query: 146 LE 147
+
Sbjct: 475 QQ 476
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 41.8 bits (99), Expect = 2e-05
Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 46/125 (36%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTN 99
+ F YD + G I + E+ ++ G +++++
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSG----FG-------------------YRLSD 109
Query: 100 IVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSI 159
D + +K D+ G + D+F++ C+ + +
Sbjct: 110 QF-----------------------HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIF 146
Query: 160 QVFDT 164
+ +DT
Sbjct: 147 RRYDT 151
Score = 25.7 bits (57), Expect = 7.3
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 127 SVFKKMDKNQDGVVTLDEFLECCL--------NDEDIKRSIQVFDT 164
+VF+++DK++ GV++ E L+ L N ++ I +FD
Sbjct: 11 NVFQRVDKDRSGVISDTE-LQQALSNGTWTPFNPVTVRSIISMFDR 55
Score = 25.3 bits (56), Expect = 7.9
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNI 66
+ L F D + G I+ E+
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQA 32
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 41.1 bits (97), Expect = 3e-05
Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 46/125 (36%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTN 99
+R F D +GDGR+ E+ + + G ++++
Sbjct: 92 ILSMREGFRKRDSSGDGRLDSNEVRAALLS----SG-------------------YQVSE 128
Query: 100 IVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSI 159
++ +K D+ + G + D+++E + ++
Sbjct: 129 -----------------------QTFQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVF 165
Query: 160 QVFDT 164
+D
Sbjct: 166 AFYDR 170
Score = 26.5 bits (59), Expect = 4.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 132 MDKNQDGVVTLDEFLECCLNDEDIKRSIQVFDT 164
DKN G +T DEF + ++ + D+
Sbjct: 72 YDKNHSGEITFDEFKDLHHFILSMREGFRKRDS 104
Score = 26.1 bits (58), Expect = 4.8
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 128 VFKKMDKNQDGVVTLDEFLECCL-------NDEDIKRSIQVFDT 164
F+ +D + G +++ E L L + ++ + ++D
Sbjct: 32 WFRAVDTDGSGAISVPE-LNAALSSAGVPFSLATTEKLLHMYDK 74
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 40.9 bits (96), Expect = 4e-05
Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 29/147 (19%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIY-----------ELMGKFAETVLEDGSVTN 89
++ + F DING+G+IT +E+ + + + E G
Sbjct: 20 KRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVE-AFFRGCGME 78
Query: 90 RVDS------VFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLD 143
+ + T+ + + T++ + D+VF DK+ G +TLD
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIRE-----WGDAVFDIFDKDGSGTITLD 133
Query: 144 EFLECC------LNDEDIKRSIQVFDT 164
E+ + ED + + + D
Sbjct: 134 EWKAYGKISGISPSQEDCEATFRHCDL 160
Score = 30.5 bits (69), Expect = 0.18
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 16 FAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72
F + + + ++ + + E F ++D +G G IT +E
Sbjct: 88 FLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGI 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 8e-05
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 43/149 (28%)
Query: 4 HDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEM 63
H +E + +I +F F+ V++ + +++EE+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDC---KDVQDMPK-----------SILSKEEI 51
Query: 64 TNIV------TAIYELMG-----------KFAETVLED--GSVTNRVDSVFKMTNIVTAI 104
+I+ + L KF E VL + + + + + +++T +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 105 YELMGKFAETVLEDGSVTNRVDSVFKKMD 133
Y E + VF K +
Sbjct: 112 YI----------EQRDRLYNDNQVFAKYN 130
Score = 26.0 bits (56), Expect = 7.4
Identities = 21/146 (14%), Positives = 41/146 (28%), Gaps = 34/146 (23%)
Query: 31 LSVLSRGSVEEKLRWTFTLYDIN-GDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTN 89
L V V+ K+ F ++ +N + + + +Y++ + D S
Sbjct: 168 LDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNI 223
Query: 90 RVDSVFKMTNIVTAIYELMGKFAET-------VLED------------GS---VTNRVDS 127
++ I + EL VL + +T R
Sbjct: 224 KL-------RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 128 VFKKMDKNQDGVVTLDEFLECCLNDE 153
V + ++LD DE
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDE 302
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 37.9 bits (89), Expect = 9e-05
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 27 FIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70
+S E+ L+ F D +G+G I + E +I
Sbjct: 22 VKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
Score = 36.8 bits (86), Expect = 2e-04
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 125 VDSVFKKMDKNQDGVVTLDEF------LECCLNDEDIKRSIQVFDT 164
+++FK++D N DG V+ +E N++ ++ + D
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDA 47
Score = 28.3 bits (64), Expect = 0.25
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 46/105 (43%)
Query: 43 LRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVT 102
F D+NGDG ++ EE+
Sbjct: 2 AEALFKEIDVNGDGAVSYEEV-------------------------------------KA 24
Query: 103 AIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
+ + E + +FK +D + +G + +EF +
Sbjct: 25 FVSKKRAIKNE---------QLLQLIFKSIDADGNGEIDQNEFAK 60
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 39.7 bits (92), Expect = 1e-04
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70
+ L+ + +LR F + D N DGR+T EE+ I+
Sbjct: 82 DELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALS 127
Score = 27.3 bits (60), Expect = 1.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 116 LEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
L D NR+ + F +DKN DG +T +E E
Sbjct: 91 LTDQGFDNRLRTFFDMVDKNADGRLTAEEVKE 122
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 39.3 bits (92), Expect = 2e-04
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 40/153 (26%)
Query: 34 LSRGSVE-EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE--------D 84
LSRG+ + L F D +G + +E + +L + E +
Sbjct: 29 LSRGASGIQGLARFFRQLDRDGSRSLDADE---FRQGLAKLGLVLDQAEAEGVCRKWDRN 85
Query: 85 GSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE 144
GS T +D + + A+ M + E V+ F K+D++ DGVVT+D+
Sbjct: 86 GSGT--LD----LEEFLRALRPPMSQAREAVIAA---------AFAKLDRSGDGVVTVDD 130
Query: 145 FLECC-------------LNDEDIKRSIQVFDT 164
DE ++R + FD+
Sbjct: 131 LRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDS 163
Score = 31.5 bits (72), Expect = 0.074
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
++F++ L + E + F D +GDG +T +++ + + + E ++
Sbjct: 93 EEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDE 152
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 38.0 bits (89), Expect = 3e-04
Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 31/135 (22%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTA-------IYELMGKFAETVLEDGSVTNRVDS 93
+ + F D N +G ++ E+ ++ + I ++ + + + +
Sbjct: 39 KYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRIL----QALDINDRGN--IT- 91
Query: 94 VFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC---- 149
T + Y T L+ F K+DK++DG ++ + +
Sbjct: 92 ---YTEFMAGCYRWK-NIESTFLKA---------AFNKIDKDEDGYISKSDIVSLVHDKV 138
Query: 150 LNDEDIKRSIQVFDT 164
L++ DI +
Sbjct: 139 LDNNDIDNFFLSVHS 153
Score = 31.5 bits (72), Expect = 0.076
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNI 66
L+ F D + DG I++ ++ ++
Sbjct: 107 STFLKAAFNKIDKDEDGYISKSDIVSL 133
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 36.6 bits (85), Expect = 5e-04
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 128 VFKKMDKNQDGVVTLDEFLECC----LNDEDIKRSIQVFDT 164
VF D N+ G + +EF C + D + Q D
Sbjct: 32 VFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDA 72
Score = 35.4 bits (82), Expect = 0.001
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 48/108 (44%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTN 99
+LR F D N GR+ REE L + +
Sbjct: 26 LARLRSVFAACDANRSGRLEREEFR-------ALCTELRVRPAD---------------- 62
Query: 100 IVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
++VF+++D ++DG +T EF
Sbjct: 63 -------------------------AEAVFQRLDADRDGAITFQEFAR 85
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 36.1 bits (84), Expect = 6e-04
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 40/109 (36%)
Query: 39 VEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMT 98
V+ +L F D NGDG +T E+ + + + V E
Sbjct: 5 VKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEA-------------- 50
Query: 99 NIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
+ K DKN DG ++ +EFL
Sbjct: 51 --------------------------SAKLIKMADKNSDGKISKEEFLN 73
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 37.6 bits (88), Expect = 7e-04
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 39/145 (26%)
Query: 38 SVEEK--LRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE--------DGSV 87
+ + L+ TF + D +G G IT+E++ E G + DGS
Sbjct: 47 NDYDVEKLKSTFLVLDEDGKGYITKEQL----KKGLEKDGLKLPYNFDLLLDQIDSDGSG 102
Query: 88 T------------------NRVDSVFKM-----TNIVTA--IYELMGKFAETVLEDGSVT 122
+ F++ +T + ++ +
Sbjct: 103 KIDYTEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDV 162
Query: 123 NRVDSVFKKMDKNQDGVVTLDEFLE 147
NRV + + +DKN DG + EF E
Sbjct: 163 NRVKRMIRDVDKNNDGKIDFHEFSE 187
Score = 30.3 bits (69), Expect = 0.17
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 128 VFKKMDKNQDGVVTLDEFLEC-----CLNDEDIKRSIQVFDT 164
F +D++ G +T ++ + + + D+
Sbjct: 57 TFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDS 98
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 36.3 bits (84), Expect = 7e-04
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 102 TAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC------LNDEDI 155
TA +++ + + V + + F+ D + ++ +EF C L DE
Sbjct: 6 TADRDILARLHKAVTSHY---HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQF 62
Query: 156 KRSIQVFDT 164
R
Sbjct: 63 DRLWNEMPV 71
Score = 30.1 bits (68), Expect = 0.12
Identities = 13/108 (12%), Positives = 25/108 (23%), Gaps = 46/108 (42%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTN 99
+ F +D I+REE I +++
Sbjct: 23 YHAITQEFENFDTMKTNTISREEFRAICNRRVQILTD----------------------- 59
Query: 100 IVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLE 147
+ D ++ +M N G + +FL
Sbjct: 60 -----------------------EQFDRLWNEMPVNAKGRLKYPDFLS 84
Score = 24.7 bits (54), Expect = 8.9
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
++F + + +E+ + +N GR+ +
Sbjct: 44 EEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPD 81
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 37.6 bits (87), Expect = 8e-04
Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 25/140 (17%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAE--TVLEDGSVTNRVDSVFKMT 98
++ F +D N G++ +E+ + + +L + + + +R
Sbjct: 48 QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLEN 107
Query: 99 NI-------VTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC-- 149
+ L + L +F ++D + + +V +EF
Sbjct: 108 KGSEDFVEFLEFRLMLCYIYDFFELTV---------MFDEIDASGNMLVDEEEFKRAVPK 158
Query: 150 -----LNDEDIKRSIQVFDT 164
ED + D
Sbjct: 159 LEAWGAKVEDPAALFKELDK 178
Score = 36.8 bits (85), Expect = 0.001
Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 45/122 (36%)
Query: 26 DFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDG 85
+F++ +L +L F D +G+ + EE + K +
Sbjct: 115 EFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRA-------VPKLEAWGAKV- 166
Query: 86 SVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEF 145
ED ++FK++DKN G VT DEF
Sbjct: 167 -------------------------------ED------PAALFKELDKNGTGSVTFDEF 189
Query: 146 LE 147
Sbjct: 190 AA 191
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 37.1 bits (86), Expect = 0.001
Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAI-YELMGKFAETVLEDGSVTNRVDSVFKMTN 99
R F +D + G + +E+ +T + + L + ++ + S ++ +
Sbjct: 103 NGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKIT----FDD 158
Query: 100 IVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTL--DEFLECCLN 151
+ +L F++ D Q GVV D+F++C ++
Sbjct: 159 YIACCVKLRALT---------------DSFRRRDTAQQGVVNFPYDDFIQCVMS 197
Score = 30.9 bits (70), Expect = 0.13
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQVFDT 164
V+S+ K+ +G +T D+++ CC+ + S + DT
Sbjct: 141 VNSIAKRYST--NGKITFDDYIACCVKLRALTDSFRRRDT 178
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 37.2 bits (86), Expect = 0.001
Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTN 99
E+ T+ YD + G I EE+ N + + + A ++D + D + K+ +
Sbjct: 102 CEEFMKTWRKYDTDHSGFIETEELKNFLKD----LLEKANKTVDDTKLAEYTDLMLKLFD 157
Query: 100 I----------VTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEF 145
+ + + F + F+ D++ +G + +E
Sbjct: 158 SNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENEL 213
Score = 33.7 bits (77), Expect = 0.018
Identities = 12/63 (19%), Positives = 23/63 (36%)
Query: 14 LSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYEL 73
L E+ + L ++ F LYD +G+G I E+ ++ + E
Sbjct: 164 LELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEK 223
Query: 74 MGK 76
+
Sbjct: 224 NKQ 226
Score = 33.3 bits (76), Expect = 0.026
Identities = 11/111 (9%), Positives = 33/111 (29%), Gaps = 5/111 (4%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAI-YELMGKFAETVLEDGSVTNRVDS----V 94
+ + +D +G G + +E+ N++ + E E + ++
Sbjct: 15 ASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGK 74
Query: 95 FKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEF 145
+ + + + ++K D + G + +E
Sbjct: 75 IGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEEL 125
Score = 32.5 bits (74), Expect = 0.047
Identities = 17/142 (11%), Positives = 41/142 (28%), Gaps = 11/142 (7%)
Query: 14 LSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYEL 73
+ E+ + + + E L+D N DG++ EM ++
Sbjct: 120 IETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENF 179
Query: 74 MGKFAETVLEDGSVTNRVDSVFKM-----TNIVTA--IYELMGKFAETVLEDGSVTNRVD 126
+ KF + + F++ + + L+ E ++ + N
Sbjct: 180 LLKFQGIKMCG----KEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNIST 235
Query: 127 SVFKKMDKNQDGVVTLDEFLEC 148
M + G + +
Sbjct: 236 YKKNIMALSDGGKLYRTDLALI 257
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 36.6 bits (85), Expect = 0.001
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 22/115 (19%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAI-YELMGKFAETVLEDGSVTNRVDSVFKMT 98
+ F D +G G + E+ + + Y L + T+++ S R+
Sbjct: 69 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIF----FD 124
Query: 99 NIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTL--DEFLECCLN 151
+ V +L F+K D Q G D+FL+ +
Sbjct: 125 DYVACCVKLRALTD---------------FFRKRDHLQQGSANFIYDDFLQGTMA 164
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 29/138 (21%), Positives = 44/138 (31%), Gaps = 47/138 (34%)
Query: 28 IQGLS----VLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLE 83
+ S LS GS+E L + TA + F + L+
Sbjct: 1 MDAYSTRPLTLSHGSLE------HVL---------------LVPTASF-----FIASQLQ 34
Query: 84 DG---SVTNRVDSVFKMTNIVTAIYELMGKF---AETVLEDGSVTNRVDSVFKKMDKNQD 137
+ + + F + T EL+GKF +++E V D V
Sbjct: 35 EQFNKILPEPTEG-FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF-DQVLN------- 85
Query: 138 GVVTLDEFLECCLNDEDI 155
+ L EF C L DI
Sbjct: 86 --LCLTEFENCYLEGNDI 101
Score = 35.8 bits (82), Expect = 0.005
Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 45/152 (29%)
Query: 8 ERTLSL-LSFAEIF-PIFS------QDFIQGLSVLSRGSVE---EKLRWTFTLYDINGDG 56
ER L F + P S D I L + +V + ++ +YD DG
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLI--NKDLVKNNVSFNAKDIQ--IPVYDTF-DG 465
Query: 57 RITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVD----SVFKMTNIV-------TAIY 105
R +I I + + + V + FK T+I+ + +
Sbjct: 466 SDLRVLSGSISERIVDCI------------IRLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 106 ELMGKFAE----TVLEDGSV-TNRVDSV-FKK 131
L + + V+ G++ N D FK+
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 35.8 bits (82), Expect = 0.005
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 39/134 (29%)
Query: 13 LLSFAEIFPIFSQDFIQGLSVLSRGSV-------EEKLRWTFTLYDINGDGRI----TRE 61
L S A++ I + ++ + V RG +E R + + IN GR+ ++E
Sbjct: 1770 LASLADVMSI--ESLVE-V-VFYRGMTMQVAVPRDELGRSNYGMIAIN-PGRVAASFSQE 1824
Query: 62 EMTNIVTAIYELMGKFAETV-----------------LEDGSVTNRVDSVFKMTNIVTAI 104
+ +V + + G E V L+ +VTN ++ + K+ I I
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD--TVTNVLNFI-KLQKI--DI 1879
Query: 105 YELMGKFA-ETVLE 117
EL + E V
Sbjct: 1880 IELQKSLSLEEVEG 1893
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 36.1 bits (84), Expect = 0.002
Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 41/130 (31%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNI 100
++L F D NGDG++ R+E+ + + G
Sbjct: 40 KELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKG------------------------- 74
Query: 101 VTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCL------NDED 154
+ + + +E VD + + +D +++G + EF+ C+ + E
Sbjct: 75 -----DTVSDLDSSQIEA-----EVDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRER 124
Query: 155 IKRSIQVFDT 164
+ + Q FD+
Sbjct: 125 LLAAFQQFDS 134
Score = 31.9 bits (73), Expect = 0.058
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 26 DFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNI 66
+F+ E+L F +D +G G+IT EE+ +
Sbjct: 108 EFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRL 148
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 34.9 bits (81), Expect = 0.006
Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 40/147 (27%)
Query: 38 SVEEK--LRWTFTLYDINGDGRITREEMTNIVTA---------IYELMGKFAETVLEDGS 86
E LR F D++ G ++ +E+ + + I++++ + + S
Sbjct: 52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVL----RDIDSNAS 107
Query: 87 VTNRVD-SVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEF 145
+ + F + A + + V FK D + +G ++++E
Sbjct: 108 GQ--IHYTDF-----LAATIDKQTYLKKEVCLI---------PFKFFDIDGNGKISVEEL 151
Query: 146 LECC--------LNDEDIKRSIQVFDT 164
L D+ I +Q D
Sbjct: 152 KRIFGRDDIENPLIDKAIDSLLQEVDL 178
Score = 33.7 bits (78), Expect = 0.012
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 26 DFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
DF+ +E F +DI+G+G+I+ EE+ I ++ + ++
Sbjct: 114 DFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGR-DDIENPLIDKAIDS 171
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 33.3 bits (77), Expect = 0.006
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 47/122 (38%)
Query: 39 VEEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMT 98
+ + + F +D NGDG+I+ E+T + + T ++
Sbjct: 1 MADDMERIFKRFDTNGDGKISLSELT-------DALRTLGSTSADE-------------- 39
Query: 99 NIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRS 158
V + ++D + DG + +EF+ C + + +
Sbjct: 40 --------------------------VQRMMAEIDTDGDGFIDFNEFISFCNANPGLMKD 73
Query: 159 IQ 160
+
Sbjct: 74 VA 75
Score = 26.0 bits (58), Expect = 2.2
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 128 VFKKMDKNQDGVVTLDEFLECC-----LNDEDIKRSIQVFDT 164
+FK+ D N DG ++L E + + ++++R + DT
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDT 49
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 34.0 bits (79), Expect = 0.007
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 27/133 (20%)
Query: 43 LRWTFTLYDINGDGRITREEMTNIVTA---------IYELMGKFAETVLEDGSVTNRVDS 93
F D+NGDG ++ EE+ V+ + + +++ DG+ +D
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIF----KSIDADGNGE--ID- 54
Query: 94 VFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC--LN 151
+ G+ + + ++K MD + DG +T +E
Sbjct: 55 ---QNEFAKFYGSIQGQ------DLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG 105
Query: 152 DEDIKRSIQVFDT 164
E + + D
Sbjct: 106 IEKVAEQVMKADA 118
Score = 31.7 bits (73), Expect = 0.047
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
+ L+ + L D++GDG++T+EE+T+ K + +
Sbjct: 74 KIGLKVLYKLMDVDGDGKLTKEEVTSF-------FKKHGIEKVAE 111
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 34.4 bits (79), Expect = 0.009
Identities = 8/109 (7%), Positives = 21/109 (19%), Gaps = 47/109 (43%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNI 100
E F + G + E+ + +G
Sbjct: 117 ELAYNLFVMNARARSGTLEPHEILPALQQ----LG------------------------- 147
Query: 101 VTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC 149
+ + R + ++ L+ ++ C
Sbjct: 148 ----FYI--------------NQRTSLLLHRLFARGMAFCDLNCWIAIC 178
Score = 30.9 bits (70), Expect = 0.14
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 127 SVFKKMDKNQDGVVTLDEFLEC------CLNDEDIKRSIQVFDT 164
F +D+++ G + ++E + L+ + R +++FDT
Sbjct: 55 QWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDT 98
Score = 26.3 bits (58), Expect = 5.2
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQVFDT 164
+ + D + +G ++ EF+ E +
Sbjct: 89 ALRMMRIFDTDFNGHISFYEFMAMYKFMELAYNLFVMNAR 128
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 32.8 bits (75), Expect = 0.011
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFL 146
+ VF+K DKN+D + EFL
Sbjct: 54 LADVFEKKDKNEDKKIDFSEFL 75
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 32.4 bits (74), Expect = 0.015
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
LM K LE+ VD + K +D+ +DG V F
Sbjct: 32 VLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFF 72
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 33.3 bits (77), Expect = 0.015
Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 42/146 (28%)
Query: 38 SVEEK--LRWTFTLYDINGDGRITREEMTNIVTA---------IYELMGKFAETVLEDGS 86
S EE L+ F + D + G IT +E+ + + I +LM + D S
Sbjct: 5 SEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLM----DAADIDKS 60
Query: 87 VTNRVDSVFKMTNIVTAIYE----LMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTL 142
T +D Y + E+ + S F DK+ G +TL
Sbjct: 61 GT--ID------------YGEFIAATVHLNKLEREE-----NLVSAFSYFDKDGSGYITL 101
Query: 143 DEFLECC----LNDEDIKRSIQVFDT 164
DE + C L+D I I+ D
Sbjct: 102 DEIQQACKDFGLDDIHIDDMIKEIDQ 127
Score = 30.3 bits (69), Expect = 0.18
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEM 63
+FI L++ EE L F+ +D +G G IT +E+
Sbjct: 66 GEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEI 104
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 32.6 bits (74), Expect = 0.016
Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 61 EEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGK-FAETVLEDG 119
+M+ + I ++ F + ++ G FK EL+ K + ++
Sbjct: 2 SKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFK---------ELVRKDLQNFLKKEN 52
Query: 120 SVTNRVDSVFKKMDKNQDGVVTLDEFL 146
++ + + +D N D ++ +EF+
Sbjct: 53 KNEKVIEHIMEDLDTNADKQLSFEEFI 79
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 32.5 bits (74), Expect = 0.017
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
EL+ + + L + + +D N+D V E+
Sbjct: 36 ELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 76
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 32.6 bits (74), Expect = 0.017
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
EL+ + + L + + +D N+D V E+
Sbjct: 48 ELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 88
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 32.5 bits (74), Expect = 0.018
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
E++ K +L D D + + +D N DG ++ DE+
Sbjct: 38 EMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYW 78
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 32.1 bits (73), Expect = 0.019
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 63 MTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGKFAETVLEDGSVT 122
MT + TA+ ++ F+ +GS K LM K L+ G
Sbjct: 1 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELK---------VLMEKELPGFLQSGKDK 51
Query: 123 NRVDSVFKKMDKNQDGVVTLDEFL 146
+ VD + K +D N D V EF+
Sbjct: 52 DAVDKLLKDLDANGDAQVDFSEFI 75
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 32.2 bits (73), Expect = 0.019
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
EL+ + + L + + +D N+D V E+
Sbjct: 39 ELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 79
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 32.1 bits (73), Expect = 0.023
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
+L+ + L+ + VD + K++D+N DG V EF+
Sbjct: 35 DLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFV 75
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 32.7 bits (75), Expect = 0.023
Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 24/116 (20%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMT- 98
R F +D + G + +E+ A+ + + + + R + K+T
Sbjct: 71 LNGWRQHFISFDSDRSGTVDPQELQK---ALTTMGFRLNPQTVNS--IAKRYSTSGKITF 125
Query: 99 -NIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTL--DEFLECCLN 151
+ + +L F++ D Q G+V D+F++C +
Sbjct: 126 DDYIACCVKLRALTD---------------SFRRRDSAQQGMVNFSYDDFIQCVMT 166
Score = 28.9 bits (65), Expect = 0.50
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQVFDT 164
V+S+ K+ G +T D+++ CC+ + S + D+
Sbjct: 110 VNSIAKRYST--SGKITFDDYIACCVKLRALTDSFRRRDS 147
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 31.3 bits (72), Expect = 0.024
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 46/106 (43%)
Query: 43 LRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVT 102
+ F +D N DG+++ +E + F+ ++
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREV-------ALAFSPYFTQE------------------ 37
Query: 103 AIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLEC 148
+ F+++D + +G + DEF C
Sbjct: 38 ---------------------DIVKFFEEIDVDGNGELNADEFTSC 62
Score = 31.3 bits (72), Expect = 0.025
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 128 VFKKMDKNQDGVVTLDEF------LECCLNDEDIKRSIQVFDT 164
VF+K DKN+DG ++LDEF EDI + + D
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDV 48
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 31.5 bits (72), Expect = 0.024
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFL 146
+D +F+++DKN DG V+ +EF
Sbjct: 49 LDDLFQELDKNGDGEVSFEEFQ 70
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 31.3 bits (72), Expect = 0.024
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 35 SRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70
+R +E+ L+ F +D +GDG IT +E+ + +
Sbjct: 1 ARAGLED-LQVAFRAFDQDGDGHITVDELRRAMAGL 35
Score = 24.4 bits (54), Expect = 8.5
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 129 FKKMDKNQDGVVTLDEFLECC------LNDEDIKRSIQVFDT 164
F+ D++ DG +T+DE L E++ I+ D
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADV 53
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 31.7 bits (72), Expect = 0.025
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
EL+ L V+ + +D N+D V +EF+
Sbjct: 36 ELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFV 76
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 31.7 bits (72), Expect = 0.027
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
+L+ K +++ +D +F+ +D NQD V EF+
Sbjct: 38 QLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFI 78
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 31.7 bits (72), Expect = 0.031
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
M ++ +D + KK+D + DG + EFL
Sbjct: 39 IFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFL 79
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 31.5 bits (72), Expect = 0.038
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 22 IFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAI 70
S + + S++ EE++R F + D +G+G I+ E+ +++T +
Sbjct: 10 GSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNL 58
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 32.1 bits (74), Expect = 0.038
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 42/146 (28%)
Query: 38 SVEEK--LRWTFTLYDINGDGRITREEMTNIVTA---------IYELMGKFAETVLEDGS 86
S EE L+ F + D + G+IT EE+ + I +LM + D S
Sbjct: 22 SEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLM----QAADVDNS 77
Query: 87 VTNRVDSVFKMTNIVTAIYE----LMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTL 142
T +D Y+ + ED + + F DK+ G +T
Sbjct: 78 GT--ID------------YKEFIAATLHLNKIERED-----HLFAAFTYFDKDGSGYITP 118
Query: 143 DEFLECC----LNDEDIKRSIQVFDT 164
DE + C + D I+ ++ D
Sbjct: 119 DELQQACEEFGVEDVRIEELMRDVDQ 144
Score = 30.6 bits (70), Expect = 0.13
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 26 DFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEM 63
+FI L++ E+ L FT +D +G G IT +E+
Sbjct: 84 EFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDEL 121
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 30.9 bits (70), Expect = 0.062
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 123 NRVDSVFKKMDKNQDGVVTLDEFL 146
+D K +D NQD + +E+
Sbjct: 62 GSLDEKMKSLDVNQDSELKFNEYW 85
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 30.6 bits (69), Expect = 0.078
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
EL+ K T + +D N+D V E++
Sbjct: 36 ELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYV 76
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 30.5 bits (69), Expect = 0.082
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 106 ELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFL 146
EL+ LE+ VD V + +D N DG EF+
Sbjct: 35 ELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFM 75
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 31.2 bits (71), Expect = 0.083
Identities = 7/45 (15%), Positives = 20/45 (44%)
Query: 120 SVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQVFDT 164
+ + S+ + ++ G + D F+ C + + + R+ + D
Sbjct: 109 HLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDK 153
Score = 30.5 bits (69), Expect = 0.17
Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 27/116 (23%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAI-YELMGKFAETVLE---DGSVTNRVDSVFK 96
+K + + +D++ G I E+ A + L ++ D D+
Sbjct: 77 KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFIS 136
Query: 97 MTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLD--EFLECCL 150
+ A++ FK +DK+ G + ++ E+L+ +
Sbjct: 137 CLVRLDAMFR---------------------AFKSLDKDGTGQIQVNIQEWLQLTM 171
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 31.4 bits (71), Expect = 0.13
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72
EE++R F ++D +G+G I+ E+ +++T + E
Sbjct: 384 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 416
Score = 29.5 bits (66), Expect = 0.48
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 32/159 (20%)
Query: 34 LSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTA-IYELMGKFAETVLEDGSVTNRVD 92
+ ++ E T++ + TR E+ + + + +
Sbjct: 240 FFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIE---LKGIDFKEDGNILGH 296
Query: 93 SVFKMTNIVTA---IYELMGKFAE-TVLEDGSVTNR-----------------VDSVFKK 131
+ T I E F+ DG++T + + + +
Sbjct: 297 KLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 356
Query: 132 MDKNQDGVVTLDEFLECCL-------NDEDIKRSIQVFD 163
+D + +G + EFL ++E+I+ + +VFD
Sbjct: 357 VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFD 395
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 30.6 bits (70), Expect = 0.14
Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 32/139 (23%)
Query: 43 LRWTFTLYDINGDGRITREEMTNIVTA---------IYELMGKFAETVLEDGSVTNRVD- 92
LR F +D + DG I ++ N + + EL + + + VD
Sbjct: 13 LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELS----QQINMNLG--GHVDF 66
Query: 93 SVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDE-------F 145
F ELMG D + F++ D N DG ++ E
Sbjct: 67 DDF---------VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRAL 117
Query: 146 LECCLNDEDIKRSIQVFDT 164
L + DI+ I+ D
Sbjct: 118 LGHQVGHRDIEEIIRDVDL 136
Score = 28.7 bits (65), Expect = 0.65
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTA 69
++LR F +D NGDG I+ E+ + A
Sbjct: 87 VKELRDAFREFDTNGDGEISTSELREAMRA 116
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 38 SVEEK--LRWTFTLYDINGDGRITREEM 63
S EE L+ F + D + G IT +E+
Sbjct: 18 SEEEIGGLKELFKMIDTDNSGTITFDEL 45
Score = 26.3 bits (59), Expect = 1.7
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 128 VFKKMDKNQDGVVTLDEF------LECCLNDEDIKRSIQVFDT 164
+FK +D + G +T DE + L + +IK + D
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADI 70
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 29.5 bits (67), Expect = 0.15
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 40 EEKLRWTFTLYDINGDGRITREE 62
F +D NGDG+I+ E
Sbjct: 10 IADRERIFKRFDTNGDGKISSSE 32
Score = 24.9 bits (55), Expect = 6.3
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 128 VFKKMDKNQDGVVTLDEFLECC-----LNDEDIKRSIQVFDT 164
+FK+ D N DG ++ E + + ++++R + DT
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDT 57
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 29.7 bits (67), Expect = 0.16
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFL 146
+D + K +DKN D + E+
Sbjct: 52 IDDLMKSLDKNSDQEIDFKEYS 73
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 29.3 bits (66), Expect = 0.17
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 13 LLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
+S E+ IF + GL L ++L D G++++++
Sbjct: 26 FVSGLEVREIFLK---TGLP-------STLLAHIWSLCDTKDCGKLSKDQ 65
Score = 28.9 bits (65), Expect = 0.25
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 126 DSVFKKMDKNQDGVVTLDE----FLECCLNDEDIKRSIQVFDT 164
D +F K DK+ DG V+ E FL+ L + + DT
Sbjct: 13 DEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDT 55
Score = 27.0 bits (60), Expect = 1.3
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 38 SVEEKLRWT--FTLYDINGDGRITREEMTNI 66
S EK ++ F D + DG ++ E+ I
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREI 35
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 29.1 bits (66), Expect = 0.19
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAI 70
EE+L+ F ++D + +G I+ E+ +++ +
Sbjct: 8 EEELKEAFKVFDKDQNGYISASELRHVMINL 38
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 29.4 bits (66), Expect = 0.20
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFL 146
+ + +D+N D V E+
Sbjct: 56 LKKLMGSLDENSDQQVDFQEYA 77
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 29.0 bits (65), Expect = 0.25
Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 126 DSVFKKMDKNQDGVVTLDE----FLECCLNDEDIKRSIQVFDT 164
+ +++++ G V + + L D + + + DT
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADT 56
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 29.0 bits (65), Expect = 0.27
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFL 146
D FK++D N DG V EFL
Sbjct: 51 ADVWFKELDINTDGAVNFQEFL 72
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 29.9 bits (66), Expect = 0.29
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLEC 148
F+ D + D + LDE+ C
Sbjct: 192 TTRFFETCDLDNDKYIALDEWAGC 215
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 28.7 bits (65), Expect = 0.30
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAI 70
EE++ F ++D NGDG I +E I+ +
Sbjct: 7 EEEILRAFKVFDANGDGVIDFDEFKFIMQKV 37
Score = 26.0 bits (58), Expect = 2.8
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 129 FKKMDKNQDGVVTLDE-------FLECCLNDEDIKRSIQVFDT 164
FK D N DGV+ DE E L D +++ +++ D
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADE 56
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 28.6 bits (64), Expect = 0.32
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFL 146
+ + + +D+N+D V E++
Sbjct: 53 IARLMEDLDRNKDQEVNFQEYV 74
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 29.0 bits (65), Expect = 0.33
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 13 LLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
+S + F++ S LS +L + + L D + DG +T E
Sbjct: 38 FISGSVAKNFFTK------SKLSI----PELSYIWELSDADCDGALTLPE 77
Score = 27.0 bits (60), Expect = 1.5
Identities = 3/36 (8%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 126 DSVFKKMDKNQDGVVTLDE----FLECCLNDEDIKR 157
+ F+ + + ++ F + L+ ++
Sbjct: 25 VNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSY 60
Score = 25.5 bits (56), Expect = 5.5
Identities = 4/31 (12%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 38 SVEEKLRWT--FTLYDINGDGRITREEMTNI 66
+ E++ + F + I+ N
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNF 47
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 28.4 bits (64), Expect = 0.38
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAI 70
++ + F L+D + D ++T EE+ ++ A+
Sbjct: 14 QEYKEAFQLFDKDNDNKLTAEELGTVMRAL 43
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 28.3 bits (64), Expect = 0.42
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 32 SVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTA 69
+ LS + E + F ++D +G G I+ +E+ ++
Sbjct: 12 AFLSEEMIAE-FKAAFDMFDADGGGDISTKELGTVMRM 48
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 29.1 bits (66), Expect = 0.45
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74
E++ F L+D + G IT +++ + + E +
Sbjct: 100 REEILKAFRLFDDDNSGTITIKDLRRVAKELGENL 134
Score = 26.0 bits (58), Expect = 5.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
+R F L+D +G G I +E+
Sbjct: 30 IREAFDLFDTDGSGTIDAKEL 50
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 29.1 bits (66), Expect = 0.46
Identities = 6/35 (17%), Positives = 19/35 (54%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74
++++ F L+D + G+I+ + + + + E +
Sbjct: 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETL 129
Score = 26.0 bits (58), Expect = 4.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
+ F+L+D+N DG + E+
Sbjct: 25 IYEAFSLFDMNNDGFLDYHEL 45
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 29.1 bits (66), Expect = 0.49
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72
+++LR F LYD G+G I+ + M I+ + E
Sbjct: 90 QQELREAFRLYDKEGNGYISTDVMREILAELDE 122
Score = 25.2 bits (56), Expect = 7.6
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 32/139 (23%)
Query: 43 LRWTFTLYD-INGDGRITREEMTNIVTA---------IYELMGKFAETVLEDGSVTNRVD 92
L F ++ G GR++ +++ I+ I +L+ + G+ +D
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLI----DEFDPFGN--GDID 68
Query: 93 -SVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC-- 149
F + +F + + + F+ DK +G ++ D E
Sbjct: 69 FDSF---------KIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAE 119
Query: 150 ----LNDEDIKRSIQVFDT 164
L+ ED+ I D
Sbjct: 120 LDETLSSEDLDAMIDEIDA 138
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 28.7 bits (65), Expect = 0.52
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72
EE+L F ++D N DG I EE+ I+ A E
Sbjct: 95 EEELANCFRIFDKNADGFIDIEELGEILRATGE 127
Score = 26.8 bits (60), Expect = 2.7
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 43 LRWTFTLYDINGDGRITREEMTNIVTA---------IYELMGKFAETVLEDGSVTNRVD- 92
+ F ++D +G G I+ +E+ ++ + ++ E V EDGS +D
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAII----EEVDEDGS--GTIDF 75
Query: 93 SVFKMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC--- 149
F +M + + + S + F+ DKN DG + ++E E
Sbjct: 76 EEF---------LVMMVRQMKEDAKGKSEEELAN-CFRIFDKNADGFIDIEELGEILRAT 125
Query: 150 ---LNDEDIKRSIQVFDT 164
+ +EDI+ ++ D
Sbjct: 126 GEHVTEEDIEDLMKDSDK 143
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 29.4 bits (65), Expect = 0.56
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 128 VFKKMDKNQDGVVTL--DEFLECCL 150
F+ +DKN G + + E+L+ +
Sbjct: 874 AFRSLDKNGTGQIQVNIQEWLQLTM 898
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 28.6 bits (65), Expect = 0.57
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74
+E++ F L+D + G+I+ + + + + E +
Sbjct: 78 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENL 112
Score = 25.9 bits (58), Expect = 4.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
+R F L+D +G G I +E+
Sbjct: 8 IREAFDLFDADGTGTIDVKEL 28
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 28.6 bits (65), Expect = 0.61
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 40 EEKLRWTFTLYDINGDGRITREE 62
++++ F ++D + DG+++ EE
Sbjct: 4 ADQIQECFQIFDKDNDGKVSIEE 26
Score = 26.0 bits (58), Expect = 5.2
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAI 70
+++ F D G+G I E+ ++ +
Sbjct: 75 SKEMLDAFRALDKEGNGTIQEAELRQLLLNL 105
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 28.2 bits (63), Expect = 0.67
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 38 SVEEKLRWT--FTLYDINGDGRITREEMTNI 66
+L++ F +D G +T + I
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTI 39
Score = 28.2 bits (63), Expect = 0.68
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 13 LLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
L+ + I Q S L + +L + L DI+ DG++T EE
Sbjct: 30 HLTGPQARTILMQ------SSLPQ----AQLASIWNLSDIDQDGKLTAEE 69
Score = 26.7 bits (59), Expect = 2.2
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 126 DSVFKKMDKNQDGVVTLDE----FLECCLNDEDIKR 157
+F DK G +T + ++ L +
Sbjct: 17 RQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLAS 52
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 27.5 bits (62), Expect = 0.73
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 40 EEKLRWTFTLYDINGDGRITREEM 63
+++++ F L+D N G I E+
Sbjct: 6 KQEIKEAFDLFDTNKTGSIDYHEL 29
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 27.9 bits (63), Expect = 0.74
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
+ +++ F + D + G I EE+ ++ +T +
Sbjct: 40 DAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKA 84
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 28.2 bits (64), Expect = 0.75
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74
EE +R F ++D ++ E + +++ + +
Sbjct: 86 EETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF 120
Score = 27.1 bits (61), Expect = 2.2
Identities = 5/21 (23%), Positives = 16/21 (76%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
++ F++ D++ DG +++E++
Sbjct: 20 MKEAFSMIDVDRDGFVSKEDI 40
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 27.8 bits (62), Expect = 0.76
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 126 DSVFKKMDKNQDGVVTLDE----FLECCLNDEDIKRSIQVFDT 164
+ FK + + +G + F + L ++ ++ D
Sbjct: 12 VNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDF 54
Score = 27.4 bits (61), Expect = 0.97
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 13 LLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
+ + F++ S L +L + L D + DG +T +E
Sbjct: 25 FIPGSAAKEFFTK------SKLPI----LELSHIWELSDFDKDGALTLDE 64
Score = 25.5 bits (56), Expect = 4.0
Identities = 4/31 (12%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 38 SVEEKLRWT--FTLYDINGDGRITREEMTNI 66
+ E++ + F + +G I
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEF 34
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth
muscle, myosin subfragment 2, heavy meromyosin,
essential light chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 28.4 bits (64), Expect = 0.78
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
+ F L D + DG I++ ++
Sbjct: 59 FKEAFQLIDQDKDGFISKNDI 79
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 28.3 bits (64), Expect = 0.79
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72
EE+L F ++D N DG I EE+ ++ A E
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELKIMLQATGE 126
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 28.4 bits (63), Expect = 0.81
Identities = 13/117 (11%), Positives = 36/117 (30%), Gaps = 16/117 (13%)
Query: 49 LYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYELM 108
L ++ +GR+ +EE + + F + G + + +L
Sbjct: 54 LMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQTSPGVLLS---------------SDLW 98
Query: 109 GKFAETVLEDG-SVTNRVDSVFKKMDKNQDGVVTLDEFLECCLNDEDIKRSIQVFDT 164
T G ++ + + + G V+ + + E + ++ +
Sbjct: 99 KAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLEAMAKTFRNLSK 155
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 27.6 bits (62), Expect = 0.90
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 40 EEKLRWTFTLYDINGDGRITREE 62
++++ F + D + G I EE
Sbjct: 41 PDQIKKVFGILDQDKSGFIEEEE 63
Score = 27.2 bits (61), Expect = 1.5
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 109 GKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC---------LNDEDIKRSI 159
F TV +++ VF +D+++ G + +E L + K +
Sbjct: 28 KSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFL 87
Query: 160 QVFDT 164
DT
Sbjct: 88 AAGDT 92
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 27.6 bits (62), Expect = 0.95
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 109 GKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEFLECC---------LNDEDIKRSI 159
F V + + F +D+++ G + DE L D + K +
Sbjct: 28 KAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFL 87
Query: 160 QVFDT 164
+ D+
Sbjct: 88 KAGDS 92
Score = 26.4 bits (59), Expect = 2.1
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
+ ++ F + D + G I +E+ + + +
Sbjct: 41 ADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKA 85
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 27.9 bits (63), Expect = 0.99
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 1 MNTHDKWERTLSLLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITR 60
+ E + F P+ +G+ E+ F ++D G+G++
Sbjct: 52 LGNPKSDELKSRRVDFETFLPMLQA----VAKNRGQGTYED-YLEGFRVFDKEGNGKVMG 106
Query: 61 EEMTNIVTAIYELM 74
E+ +++T + E M
Sbjct: 107 AELRHVLTTLGEKM 120
Score = 27.2 bits (61), Expect = 2.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 41 EKLRWTFTLYDINGDGRITREEM 63
E+ + F L+D GDG+I +
Sbjct: 10 EEFKEAFELFDRVGDGKILYSQC 32
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 28.3 bits (64), Expect = 1.0
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74
EE++R F ++D +G+G I+ E+ +++T + E +
Sbjct: 83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL 117
Score = 25.9 bits (58), Expect = 4.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
+ F+L+D +GDG IT +E+
Sbjct: 13 FKEAFSLFDKDGDGTITTKEL 33
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 28.6 bits (63), Expect = 1.1
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 128 VFKKMDKNQDGVVTL--DEFLECCL 150
+FK++D G + L +L +
Sbjct: 675 IFKQLDPENTGTIQLDLISWLSFSV 699
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 27.3 bits (61), Expect = 1.2
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 41 EKLRWTFTLYDINGDGRITREEM 63
E + + +D+NG+G I +
Sbjct: 32 EGFKEKYMEFDLNGNGDIDIMSL 54
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 27.2 bits (61), Expect = 1.3
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 40 EEKLRWTFTLYDINGDGRITREEM 63
+++ F D + G + +E+
Sbjct: 40 ASQVKDIFRFIDNDQSGYLDGDEL 63
Score = 26.9 bits (60), Expect = 1.7
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 128 VFKKMDKNQDGVVTLDE---------FLECCLNDEDIKRSIQVFDT 164
+F+ +D +Q G + DE L + + K + D
Sbjct: 46 IFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADN 91
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 27.4 bits (62), Expect = 1.4
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74
E++L F ++D NGDG I+ E+ +++T+I E +
Sbjct: 83 EQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKL 117
Score = 25.9 bits (58), Expect = 4.3
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
+ F L+D + G I+ E+
Sbjct: 13 FKEAFALFDKDNSGSISASEL 33
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 28.3 bits (62), Expect = 1.4
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 127 SVFKKMDKNQDGVVTLDEFLECC------LNDEDIKRSIQVFDT 164
S +K DKN+D + E + ++D ++ + D
Sbjct: 15 SCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDH 58
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 27.2 bits (61), Expect = 1.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 128 VFKKMDKNQDGVVTLDE---FLECC------LNDEDIKRSIQVFDT 164
+F+ +D +Q G + DE FL+ L + K + D
Sbjct: 46 IFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADH 91
Score = 26.9 bits (60), Expect = 1.8
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 40 EEKLRWTFTLYDINGDGRITREE 62
+L+ F + D + G I +E
Sbjct: 40 SSQLKEIFRILDNDQSGFIEEDE 62
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 26.8 bits (60), Expect = 1.6
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
+ ++ F + D + G I +E+ + + +
Sbjct: 40 LDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKA 84
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 26.8 bits (60), Expect = 1.7
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLED 84
++ F D + G I EE+ ++ + + +
Sbjct: 41 ANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKA 85
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 27.6 bits (62), Expect = 1.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
+ FT+ D N DG I ++++
Sbjct: 27 FKEAFTVIDQNADGIIDKDDL 47
Score = 26.0 bits (58), Expect = 5.0
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVT 68
E+ + F + D +G G I + + ++T
Sbjct: 94 EDVIMGAFKVLDPDGKGSIKKSFLEELLT 122
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule
2, metal-binding protein; 2.15A {Homo sapiens} PDB:
2jjz_B 2vtg_A
Length = 150
Score = 27.1 bits (60), Expect = 1.7
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 40 EEKLRWTFTLYDINGDGRITREEM 63
+ + +D+N +G I +
Sbjct: 49 LTAFKEKYMEFDLNNEGEIDLMSL 72
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 27.2 bits (60), Expect = 1.8
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 41 EKLRWTFTLYDINGDGRITREEMTNIVTAI 70
E + + +D+NG+G I + ++ +
Sbjct: 48 EAFKVKYMEFDLNGNGDIDIMSLKRMLEKL 77
Score = 25.6 bits (56), Expect = 5.8
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 127 SVFKKMDKNQDGVVTLDEFLECC------LNDEDIKRSIQVFDT 164
+ + D N +G + + ++KR I+ +
Sbjct: 52 VKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSS 95
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 27.1 bits (61), Expect = 1.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
+ F + D N DG I +E++
Sbjct: 9 FKEAFNMIDQNRDGFIDKEDL 29
Score = 26.3 bits (59), Expect = 3.5
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVT 68
E+ +R F +D G I + + ++T
Sbjct: 75 EDVIRNAFACFDEEASGFIHEDHLRELLT 103
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand;
NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 27.1 bits (61), Expect = 2.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 40 EEKLRWTFTLYDINGDGRITREE 62
+ + F+L+D +G GRI +
Sbjct: 4 DSPYKQAFSLFDRHGTGRIPKTS 26
Score = 26.7 bits (60), Expect = 2.9
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 130 KKMDKNQDGVVTLDEFLEC---------CLNDEDIKRSIQVFD 163
+++ V +++FL+ + E+ + QVFD
Sbjct: 44 TEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFD 86
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 27.1 bits (61), Expect = 2.0
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74
EE+L F ++D +G+G I+ E+ +++T + E +
Sbjct: 82 EEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL 116
Score = 25.9 bits (58), Expect = 4.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 41 EKLRWTFTLYDINGDGRITREEM 63
+ + F L+D +GDG IT +E+
Sbjct: 10 AEFKEAFALFDKDGDGTITTKEL 32
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 26.8 bits (60), Expect = 2.2
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 23/131 (17%)
Query: 47 FTLYDINGDGRITREEMTNIVTAI------YELMGKFAETVLEDGSVTNRVD-SVFKMTN 99
FTL+D G G I ++ + + + AI + + + + T
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDA--SSLTLDQI--TG 65
Query: 100 IVTAIYELMGKFAETVLEDGSVTNRVDSVFKKMDKNQDGVVTLDEF------LECCLNDE 153
++ + + + ED F+ DK G V++ + L L D
Sbjct: 66 LIEVNEKELDATTKAKTED------FVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDA 119
Query: 154 DIKRSIQVFDT 164
++ ++ +
Sbjct: 120 EVDELLKGVEV 130
Score = 26.8 bits (60), Expect = 2.6
Identities = 9/61 (14%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 14 LSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREEMTNIVTAIYEL 73
L+ +I + + L ++ E+ F ++D G+++ ++ ++T + E
Sbjct: 58 LTLDQITGLIEV-NEKELDATTKAKTED-FVKAFQVFDKESTGKVSVGDLRYMLTGLGEK 115
Query: 74 M 74
+
Sbjct: 116 L 116
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 27.1 bits (61), Expect = 2.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 41 EKLRWTFTLYDINGDGRITREEM 63
+ + F L+D GD +IT ++
Sbjct: 8 DDFKEAFLLFDRTGDAKITASQV 30
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 26.5 bits (59), Expect = 2.3
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 40 EEKLRWTFTLYDINGDGRITREEM 63
+ ++ F + D + G I +E+
Sbjct: 40 ADDVKKVFHILDKDKSGFIEEDEL 63
Score = 26.1 bits (58), Expect = 3.6
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 128 VFKKMDKNQDGVVTLDE---FLECC------LNDEDIKRSIQVFDT 164
VF +DK++ G + DE L+ L+ ++ K + D
Sbjct: 46 VFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDK 91
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 26.7 bits (60), Expect = 2.4
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYE 72
E+ LR F+++D +G G I + + +++ + +
Sbjct: 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGD 116
Score = 26.7 bits (60), Expect = 3.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 43 LRWTFTLYDINGDGRITREEM 63
L+ FT+ D + DG I E++
Sbjct: 18 LKEAFTMIDQDRDGFIGMEDL 38
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 26.7 bits (59), Expect = 2.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 13 LLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
++ + F Q S L + L + L D+N DGR+ + E
Sbjct: 48 FITGDQARNFFFQ------SGLPQ----PVLAQIWALADMNNDGRMDQVE 87
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 26.7 bits (60), Expect = 2.8
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74
E+ LR F +D G G I + + + + + + +
Sbjct: 78 EDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRL 112
Score = 25.1 bits (56), Expect = 7.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 47 FTLYDINGDGRITREEM 63
F L+D G IT+E +
Sbjct: 12 FELFDSERTGFITKEGL 28
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 25.6 bits (57), Expect = 2.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 125 VDSVFKKMDKNQDGVVTLDEFLE 147
+D + +++DKN DG V+ +EFL
Sbjct: 47 LDEMIEEVDKNGDGEVSFEEFLV 69
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 26.4 bits (58), Expect = 3.1
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 13 LLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
++ A + S L L + L D++ DG + EE
Sbjct: 66 KITGANAKKEMVK------SKLPN----TVLGKIWKLADVDKDGLLDDEE 105
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH,
cell WALL, STR genomics, PSI-2, protein structure
initiative; 1.80A {Bacillus anthracis}
Length = 203
Score = 26.6 bits (59), Expect = 3.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 55 DGRITREEMTNIVTAIYELMGKFAETVL 82
+G+I R M +++ Y+L K T
Sbjct: 97 NGKIDRVSMASLLVEAYKLDTKVNGTPA 124
>1x91_A Invertase/pectin methylesterase inhibitor family protein;
four-helix bundle, alpha hairpin, disulfide bridge,
domain- swapping, linker; 1.50A {Arabidopsis thaliana}
SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Length = 153
Score = 26.5 bits (58), Expect = 3.4
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 77 FAETVLEDGSVTNRVDSVFKMTNIVTAIYELMGK 110
D SV N ++ + I I ++ +
Sbjct: 119 VKRLRSVDSSVVNNSKTIKNLCGIALVISNMLPR 152
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 26.1 bits (57), Expect = 4.2
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 125 VDSVFKKMDKNQDGVVTLDE---FLECCLNDEDIKRSIQVFD 163
+ ++ K+MD ++DG + ++E F+ + +D
Sbjct: 17 LQTIHKQMDDDKDGGIEVEESDEFIREDMKYKDATNKHSHLH 58
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural
genomics, PSI, protein structure initiative; NMR {Homo
sapiens} SCOP: a.39.1.7
Length = 118
Score = 25.8 bits (56), Expect = 5.0
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 25 QDFIQGLSVLSRGSVEEKLRWT 46
D S+L G E+KL W+
Sbjct: 97 NDVSCYFSLLEGGRPEDKLEWS 118
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 25.6 bits (57), Expect = 5.6
Identities = 2/17 (11%), Positives = 7/17 (41%)
Query: 47 FTLYDINGDGRITREEM 63
+ + G+I+ +
Sbjct: 21 IYFNEKSSGGKISIDNA 37
Score = 25.3 bits (56), Expect = 7.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAIYELM 74
E+L F +D N G +T+ +M NI+T + +
Sbjct: 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDAL 117
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand,
EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB:
2jxc_A 1f8h_A 1ff1_A
Length = 106
Score = 25.1 bits (55), Expect = 7.2
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 13 LLSFAEIFPIFSQDFIQGLSVLSRGSVEEKLRWTFTLYDINGDGRITREE 62
LS ++ P+ S L + L + L DI+ DG + R+E
Sbjct: 30 FLSGDKVKPVLLN------SKLPV----DILGRVWELSDIDHDGMLDRDE 69
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Length = 620
Score = 26.2 bits (57), Expect = 7.3
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 47 FTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYE 106
F +YD++GDG + E+ + TA GK E N + +T
Sbjct: 185 FMVYDLDGDG---KAEIA-MKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKG 240
Query: 107 LMGKFAETVLED---GSVTNRVDSVFKKMDKNQDGVVTLD 143
G+ TV + G + + D +MD+ G LD
Sbjct: 241 ETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLD 280
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 25.2 bits (56), Expect = 7.7
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 40 EEKLRWTFTLYDINGDGRITREEMTNIVTAI 70
F +D G G I+ E+ +++TA+
Sbjct: 83 FADYMEAFKTFDREGQGFISGAELRHVLTAL 113
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 25.6 bits (57), Expect = 8.4
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 72 ELMGKFAETV---LEDGSVTNRVDSVFKMTNIVTAIYELM 108
+ V LE G+V + VF ++ A + L+
Sbjct: 302 AIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADA-HRLL 340
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM;
1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Length = 591
Score = 25.8 bits (56), Expect = 8.5
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 47 FTLYDINGDGRITREEMTNIVTAIYELMGKFAETVLEDGSVTNRVDSVFKMTNIVTAIYE 106
F +YD++GDG+ E + TA G + N V +T
Sbjct: 181 FMVYDLDGDGKA--EVA--MKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQG 236
Query: 107 LMGKFAETV---LEDGSVTNRVDSVFKKMDKNQDGVVTLD 143
GK T G+V++ DS ++D+ G+ LD
Sbjct: 237 STGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLD 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.385
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,495,029
Number of extensions: 143128
Number of successful extensions: 1107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 953
Number of HSP's successfully gapped: 518
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)