BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5344
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 617 bits (1592), Expect = e-177, Method: Compositional matrix adjust.
Identities = 325/531 (61%), Positives = 393/531 (74%), Gaps = 32/531 (6%)
Query: 57 IEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGP 116
IEAEAVMLGQ IS++LP+VIGY++ GK VTSTD+VLTITKHLRQ+GVVGKFVEFFGP
Sbjct: 243 IEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGP 302
Query: 117 GVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARL 176
GV +LSIADRATI+NMCPEYGAT FFPVD+ S++YL QT + +KV + R A
Sbjct: 303 GVAQLSIADRATIANMCPEYGATATFFPVDEVSIKYLVQTGRDE--SKVKQIRKYLQA-- 358
Query: 177 VG-FKGYGLKSQ------VIE---------------PLNQLGFDVVGFGCMTCIGNS--- 211
VG F+ Y SQ V+E P +++ + +C+G
Sbjct: 359 VGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 418
Query: 212 -GPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVE 270
G P D F + +TL HGSVVIAAITS TNTSNPSVMLGAGLLAKKAV+
Sbjct: 419 KGFQVAP-DHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVD 477
Query: 271 AGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIV 330
AGL+V PY+KTSLSPGSGVVTYYLRES V+ L+QLGFDVVG+G MTCIGNSGPL P+V
Sbjct: 478 AGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVGYGSMTCIGNSGPLPEPVV 537
Query: 331 DAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTN 390
+AI + +LV GVLSGNRNFEGR+HPNTRANYLASP LVIAYA+AGT+ IDFEKEP+GTN
Sbjct: 538 EAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTN 597
Query: 391 KQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDL 450
+G VFLRDIWP+R EI AVE+Q+VIP MF EVY +IE + SW AL AP +LY W+
Sbjct: 598 AKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETVNASWNALAAPSDKLYLWNP 657
Query: 451 SSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLA 510
STYIK PPFF+ + D+ P +++ A VLL LGDSVTTDHISPAG+IAR S AA++L
Sbjct: 658 KSTYIKSPPFFENLTLDLQPPKSIVD-AYVLLNLGDSVTTDHISPAGNIARNSPAARYLT 716
Query: 511 SKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLE 561
++GL+P +FNSYGSRRGND +M RGTFANIR++N+ ++K P+T+H PS E
Sbjct: 717 NRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQAPQTIHLPSGE 767
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/33 (84%), Positives = 30/33 (90%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDF 33
MRDAVK L GDP+KINPICP DLVIDHS+QVDF
Sbjct: 119 MRDAVKKLGGDPEKINPICPVDLVIDHSIQVDF 151
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 616 bits (1589), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 394/536 (73%), Gaps = 40/536 (7%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
GIEAEAVMLGQ IS++LP+VIGY++ GK VTSTD+VLTITKHLRQ+GVVGKFVEFFG
Sbjct: 222 GIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFG 281
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
PGV +LSIADRATI+NMCPEYGAT FFPVD+ S+ YL QT + K + + +
Sbjct: 282 PGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIK----KYLQ 337
Query: 176 LVG-FKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDK-------------L 221
VG F+ + SQ + + D+ + C SGP P DK L
Sbjct: 338 AVGMFRDFNDPSQDPDFTQVVELDLKT--VVPCC--SGPKRPQ-DKVAVSDMKKDFESCL 392
Query: 222 GATGQFE----------------FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLA 265
GA F+ ++ +TL HGSVVIAAITSCTNTSNPSVMLGAGLLA
Sbjct: 393 GAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLA 452
Query: 266 KKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPL 325
KKAV+AGL+V PYIKTSLSPGSGVVTYYL+ES V+ L+QLGFDVVG+GCMTCIGNSGPL
Sbjct: 453 KKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPL 512
Query: 326 DPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKE 385
P+V+AI + +LV GVLSGNRNFEGR+HPNTRANYLASP LVIAYA+AGT+ IDFEKE
Sbjct: 513 PEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKE 572
Query: 386 PIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQL 445
P+G N +G VFL+DIWP+R EI AVE+Q+VIP MF+EVY +IE + SW AL P +L
Sbjct: 573 PLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKL 632
Query: 446 YPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAA 505
+ W+ STYIK PPFF+ + D+ P +++ A VLL LGDSVTTDHISPAG+IAR S A
Sbjct: 633 FFWNSKSTYIKSPPFFENLTLDLQPPKSIVD-AYVLLNLGDSVTTDHISPAGNIARNSPA 691
Query: 506 AKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLE 561
A++L ++GL+P +FNSYGSRRGND VM RGTFANIR++N+ ++K P+T+H PS E
Sbjct: 692 ARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQAPQTIHLPSGE 747
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 31/33 (93%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDF 33
MRDAVK L GDP+KINP+CP+DLVIDHS+QVDF
Sbjct: 99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDF 131
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 193/447 (43%), Gaps = 64/447 (14%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+A VM G L P+VIG K+ G LS + + D++L + L G G VE+ GPG
Sbjct: 184 DAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPG 243
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
V +S ATI NM E GAT FP + +YL +T ++ ++ LV
Sbjct: 244 VDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKD----HLV 299
Query: 178 GFKGYGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGK 232
G QVIE L++L + +GP P P+ ++G+ E EG
Sbjct: 300 PDPGCHY-DQVIEINLSELKPHI-----------NGPFTPDLAHPVAEVGSVA--EKEGW 345
Query: 233 TYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTY 292
++ + I SCTN+S + A +AK+A+ GL + +++PGS +
Sbjct: 346 PLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRA 397
Query: 293 YLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEG 352
+ + L +G V+ C CIG D + EKN +V S NRNF G
Sbjct: 398 TIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRNFTG 450
Query: 353 R--IHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHA 410
R +P T A ++ SP +V A A+AGT+ + E + + T K G L P E+
Sbjct: 451 RNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR 506
Query: 411 VEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTP 470
E P ++ Y S+ R +P Q PF G+D
Sbjct: 507 AE---FDPG--QDTYQHPPKDSSGQRVAVSPTSQRLQL--------LEPFDKWDGKD--- 550
Query: 471 GDRVIEQARVLLLLGDSVTTDHISPAG 497
+E ++L+ + TTDHIS AG
Sbjct: 551 ----LEDLQILIKVKGKCTTDHISAAG 573
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 193/447 (43%), Gaps = 64/447 (14%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+A VM G L P+VIG K+ G LS + + D++L + L G G VE+ GPG
Sbjct: 184 DAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPG 243
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
V +S ATI NM E GAT FP + +YL +T ++ ++ LV
Sbjct: 244 VDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKD----HLV 299
Query: 178 GFKGYGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGK 232
G QVIE L++L + +GP P P+ ++G+ E EG
Sbjct: 300 PDPGCHY-DQVIEINLSELKPHI-----------NGPFTPDLAHPVAEVGSVA--EKEGW 345
Query: 233 TYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTY 292
++ + I SCTN+S + A +AK+A+ GL + +++PGS +
Sbjct: 346 PLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRA 397
Query: 293 YLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEG 352
+ + L +G V+ C CIG D + EKN +V S NRNF G
Sbjct: 398 TIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRNFTG 450
Query: 353 R--IHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHA 410
R +P T A ++ SP +V A A+AGT+ + E + + T K G L P E+
Sbjct: 451 RNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR 506
Query: 411 VEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTP 470
E P ++ Y S+ R +P Q PF G+D
Sbjct: 507 AE---FDPG--QDTYQHPPKDSSGQRVDVSPTSQRLQL--------LEPFDKWDGKD--- 550
Query: 471 GDRVIEQARVLLLLGDSVTTDHISPAG 497
+E ++L+ + TTDHIS AG
Sbjct: 551 ----LEDLQILIKVKGKCTTDHISAAG 573
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 193/447 (43%), Gaps = 64/447 (14%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+A VM G L P+VIG K+ G LS + + D++L + L G G VE+ GPG
Sbjct: 185 DAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPG 244
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
V +S ATI NM E GAT FP + +YL +T ++ ++ LV
Sbjct: 245 VDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKD----HLV 300
Query: 178 GFKGYGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGK 232
G QVIE L++L + +GP P P+ ++G+ E EG
Sbjct: 301 PDPGCHY-DQVIEINLSELKPHI-----------NGPFTPDLAHPVAEVGSVA--EKEGW 346
Query: 233 TYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTY 292
++ + I SCTN+S + A +AK+A+ GL + +++PGS +
Sbjct: 347 PLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRA 398
Query: 293 YLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEG 352
+ + L +G V+ C CIG D + EKN +V S NRNF G
Sbjct: 399 TIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRNFTG 451
Query: 353 R--IHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHA 410
R +P T A ++ SP +V A A+AGT+ + E + + T K G L P E+
Sbjct: 452 RNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR 507
Query: 411 VEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTP 470
E P ++ Y S+ R +P Q PF G+D
Sbjct: 508 AE---FDPG--QDTYQHPPKDSSGQRVDVSPTSQRLQL--------LEPFDKWDGKD--- 551
Query: 471 GDRVIEQARVLLLLGDSVTTDHISPAG 497
+E ++L+ + TTDHIS AG
Sbjct: 552 ----LEDLQILIKVKGKCTTDHISAAG 574
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 193/447 (43%), Gaps = 64/447 (14%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+A VM G L P+VIG K+ G LS + + D++L + L G G VE+ GPG
Sbjct: 184 DAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPG 243
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
V +S ATI NM E GAT FP + +YL +T ++ ++ LV
Sbjct: 244 VDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKD----HLV 299
Query: 178 GFKGYGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGK 232
G QVIE L++L + +GP P P+ ++G+ E EG
Sbjct: 300 PDPGCHY-DQVIEINLSELKPHI-----------NGPFTPDLAHPVAEVGSVA--EKEGW 345
Query: 233 TYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTY 292
++ + I SCTN+S + A +AK+A+ GL + +++PGS +
Sbjct: 346 PLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRA 397
Query: 293 YLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEG 352
+ + L +G V+ C CIG D + EKN +V S NRNF G
Sbjct: 398 TIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRNFTG 450
Query: 353 R--IHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHA 410
R +P T A ++ SP +V A A+AGT+ + E + + T K G L P E+
Sbjct: 451 RNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR 506
Query: 411 VEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTP 470
E P ++ Y S+ R +P Q PF G+D
Sbjct: 507 AE---FDPG--QDTYQHPPKDSSGQRVDVSPTSQRLQL--------LEPFDKWDGKD--- 550
Query: 471 GDRVIEQARVLLLLGDSVTTDHISPAG 497
+E ++L+ + TTDHIS AG
Sbjct: 551 ----LEDLQILIKVKGKCTTDHISAAG 573
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 192/447 (42%), Gaps = 64/447 (14%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+A VM G L P+VIG K+ G LS + + D++L + L G G VE+ GPG
Sbjct: 185 DAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPG 244
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
V +S ATI NM E GAT FP + +YL +T ++ ++ LV
Sbjct: 245 VDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKD----HLV 300
Query: 178 GFKGYGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGK 232
G QVIE L++L + +GP P P+ ++G+ E EG
Sbjct: 301 PDPGCHY-DQVIEINLSELKPHI-----------NGPFTPDLAHPVAEVGSVA--EKEGW 346
Query: 233 TYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTY 292
++ + I SCTN+S + A +AK+A+ GL +++PGS +
Sbjct: 347 PLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKSQF--TITPGSEQIRA 398
Query: 293 YLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEG 352
+ + L +G V+ C CIG D + EKN +V S NRNF G
Sbjct: 399 TIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRNFTG 451
Query: 353 R--IHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHA 410
R +P T A ++ SP +V A A+AGT+ + E + + T K G L P E+
Sbjct: 452 RNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR 507
Query: 411 VEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTP 470
E P ++ Y S+ R +P Q PF G+D
Sbjct: 508 AE---FDPG--QDTYQHPPKDSSGQRVDVSPTSQRLQL--------LEPFDKWDGKD--- 551
Query: 471 GDRVIEQARVLLLLGDSVTTDHISPAG 497
+E ++L+ + TTDHIS AG
Sbjct: 552 ----LEDLQILIKVKGKCTTDHISAAG 574
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 190/446 (42%), Gaps = 62/446 (13%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+A VM G L P+VIG K+ G LS + + D++L + L G G VE+ GPG
Sbjct: 185 DAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPG 244
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
V +S ATI NM E GAT FP + +YL +T ++ ++ LV
Sbjct: 245 VDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKD----HLV 300
Query: 178 GFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGKT 233
G + L++L + +GP P P+ ++G+ E EG
Sbjct: 301 PDSGCHYDQLIEINLSELKPHI-----------NGPFTPDLAHPVAEVGSVA--EKEGWP 347
Query: 234 YTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYY 293
++ + I SCTN+S + A +AK+A+ GL + +++PGS +
Sbjct: 348 LDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRAT 399
Query: 294 LRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGR 353
+ + L +G V+ C CIG D + EKN +V S NRNF GR
Sbjct: 400 IERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRNFTGR 452
Query: 354 --IHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAV 411
+P T A ++ SP +V A A+AGT+ + E + + T K G L P E+
Sbjct: 453 NDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRA 508
Query: 412 EKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPG 471
E P ++ Y S+ R +P Q PF G+D
Sbjct: 509 E---FDPG--QDTYQHPPKDSSGQRVDVSPTSQRLQL--------LEPFDKWDGKD---- 551
Query: 472 DRVIEQARVLLLLGDSVTTDHISPAG 497
+E ++L+ + TTDHIS AG
Sbjct: 552 ---LEDLQILIKVKGKCTTDHISAAG 574
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 190/446 (42%), Gaps = 62/446 (13%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+A VM G L P+VIG K+ G LS + + D++L + L G G VE+ GPG
Sbjct: 185 DAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPG 244
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
V +S ATI NM E GAT FP + +YL +T ++ ++ LV
Sbjct: 245 VDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKD----HLV 300
Query: 178 GFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGKT 233
G + L++L + +GP P P+ ++G+ E EG
Sbjct: 301 PDSGCHYDQLIEINLSELKPHI-----------NGPFTPDLAHPVAEVGSVA--EKEGWP 347
Query: 234 YTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYY 293
++ + I SCTN+S + A +AK+A+ GL + +++PGS +
Sbjct: 348 LDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRAT 399
Query: 294 LRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGR 353
+ + L +G V+ C CIG D + EKN +V S NRNF GR
Sbjct: 400 IERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRNFTGR 452
Query: 354 --IHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAV 411
+P T A ++ SP +V A A+AGT+ + E + + T K G L P E+
Sbjct: 453 NDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRA 508
Query: 412 EKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPG 471
E P ++ Y S+ R +P Q PF G+D
Sbjct: 509 E---FDPG--QDTYQHPPKDSSGQRVDVSPTSQRLQL--------LEPFDKWDGKD---- 551
Query: 472 DRVIEQARVLLLLGDSVTTDHISPAG 497
+E ++L+ + TTDHIS AG
Sbjct: 552 ---LEDLQILIKVKGKCTTDHISAAG 574
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 190/446 (42%), Gaps = 62/446 (13%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+A VM G L P+VIG K+ G LS + + D++L + L G G VE+ GPG
Sbjct: 185 DAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPG 244
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
V +S ATI NM E GAT FP + +YL +T ++ ++ LV
Sbjct: 245 VDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKD----HLV 300
Query: 178 GFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGKT 233
G + L++L + +GP P P+ ++G+ E EG
Sbjct: 301 PDSGCHYDQLIEINLSELKPHI-----------NGPFTPDLAHPVAEVGSVA--EKEGWP 347
Query: 234 YTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYY 293
++ + I SCTN+S + A +AK+A+ GL + +++PGS +
Sbjct: 348 LDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRAT 399
Query: 294 LRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGR 353
+ + L +G V+ C CIG D + EKN +V S NRNF GR
Sbjct: 400 IERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRNFTGR 452
Query: 354 --IHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAV 411
+P T A ++ SP +V A A+AGT+ + E + + T K G L P E+
Sbjct: 453 NDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRA 508
Query: 412 EKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPG 471
E P ++ Y S+ R +P Q PF G+D
Sbjct: 509 E---FDPG--QDTYQHPPKDSSGQRVDVSPTSQRLQL--------LEPFDKWDGKD---- 551
Query: 472 DRVIEQARVLLLLGDSVTTDHISPAG 497
+E ++L+ + TTDHIS AG
Sbjct: 552 ---LEDLQILIKVKGKCTTDHISAAG 574
>pdb|3FY3|A Chain A, Crystal Structure Of Truncated Hemolysin A From P.
Mirabilis
Length = 236
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 5 VKSLNGDPQKINPICPSDLVIDHSVQVDFX-----XXXXXXXXXXXTALALHARDPGIEA 59
V ++NG Q IN + P++ I H+ DF + LA H + A
Sbjct: 14 VSAVNGGTQVINIVTPNNEGISHNQYQDFNVGKPGAVFNNALEAGQSQLAGH-----LNA 68
Query: 60 EAVMLGQAISLLLPEVI 76
+ + GQA SL+L EV+
Sbjct: 69 NSNLNGQAASLILNEVV 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,331,116
Number of Sequences: 62578
Number of extensions: 749206
Number of successful extensions: 1499
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 17
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)