Query psy5344
Match_columns 566
No_of_seqs 291 out of 2057
Neff 5.3
Searched_HMMs 46136
Date Sat Aug 17 00:12:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452|consensus 100.0 7E-188 1E-192 1477.4 31.7 559 1-565 103-755 (892)
2 PLN00070 aconitate hydratase 100.0 2E-179 5E-184 1504.2 45.8 549 1-565 142-795 (936)
3 PTZ00092 aconitate hydratase-l 100.0 3E-179 6E-184 1501.8 45.3 549 1-565 110-759 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 4E-179 8E-184 1498.1 46.0 549 1-565 86-736 (876)
5 PRK12881 acnA aconitate hydrat 100.0 8E-178 2E-182 1491.1 45.5 549 1-565 103-747 (889)
6 PRK09277 aconitate hydratase; 100.0 4E-177 9E-182 1483.1 46.8 549 1-565 104-746 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 2E-175 4E-180 1463.3 43.8 542 1-565 93-719 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 3E-172 8E-177 1421.8 38.8 536 1-561 95-719 (861)
9 TIGR01340 aconitase_mito aconi 100.0 2E-118 4E-123 1003.7 37.7 469 5-565 73-610 (745)
10 PRK07229 aconitate hydratase; 100.0 9E-107 2E-111 903.7 33.5 428 3-547 44-516 (646)
11 TIGR01342 acon_putative aconit 100.0 1E-102 3E-107 869.5 34.0 406 4-499 42-494 (658)
12 cd01586 AcnA_IRP Aconitase A c 100.0 2.9E-99 6E-104 795.5 28.2 314 1-378 19-404 (404)
13 PRK11413 putative hydratase; P 100.0 4.5E-94 9.8E-99 804.3 31.9 433 4-525 74-586 (751)
14 cd01583 IPMI 3-isopropylmalate 100.0 1.2E-93 2.6E-98 754.7 27.2 318 4-378 15-382 (382)
15 cd01584 AcnA_Mitochondrial Aco 100.0 2.8E-92 6.1E-97 749.0 29.8 336 4-378 15-412 (412)
16 TIGR00170 leuC 3-isopropylmala 100.0 2.1E-91 4.5E-96 753.2 29.5 337 4-379 43-460 (465)
17 cd01585 AcnA_Bact Aconitase ca 100.0 3.1E-91 6.7E-96 734.6 28.5 322 3-378 15-380 (380)
18 TIGR00139 h_aconitase homoacon 100.0 5E-91 1.1E-95 776.4 31.5 446 5-515 48-573 (712)
19 PRK12466 isopropylmalate isome 100.0 4.2E-91 9E-96 751.8 28.8 337 4-379 44-462 (471)
20 PRK05478 isopropylmalate isome 100.0 5.5E-91 1.2E-95 750.7 29.2 338 3-379 42-460 (466)
21 TIGR01343 hacA_fam homoaconita 100.0 2.9E-90 6.4E-95 733.6 27.0 324 3-379 40-409 (412)
22 PRK00402 3-isopropylmalate deh 100.0 5.3E-90 1.2E-94 732.7 27.1 324 3-379 43-412 (418)
23 TIGR02086 IPMI_arch 3-isopropy 100.0 9.9E-90 2.1E-94 729.6 26.6 324 3-379 41-408 (412)
24 PF00330 Aconitase: Aconitase 100.0 2.5E-90 5.5E-95 747.1 20.6 344 4-376 43-465 (465)
25 TIGR02083 LEU2 3-isopropylmala 100.0 2.9E-89 6.3E-94 725.8 27.9 327 3-379 42-414 (419)
26 KOG0453|consensus 100.0 1.7E-88 3.6E-93 725.3 27.6 429 18-500 115-601 (778)
27 COG0065 LeuC 3-isopropylmalate 100.0 4.3E-88 9.3E-93 700.1 26.1 328 3-379 44-417 (423)
28 cd01582 Homoaconitase Homoacon 100.0 6.1E-85 1.3E-89 682.2 25.1 304 5-378 15-363 (363)
29 cd01581 AcnB Aconitate hydrata 100.0 4.5E-82 9.7E-87 673.7 25.1 326 3-378 40-436 (436)
30 cd01351 Aconitase Aconitase ca 100.0 2.5E-79 5.3E-84 649.8 27.8 333 3-378 14-389 (389)
31 PRK09238 bifunctional aconitat 100.0 5E-75 1.1E-79 651.7 26.3 329 2-379 411-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 2.1E-74 4.5E-79 645.1 25.4 329 2-379 412-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 1E-73 2.2E-78 638.5 24.3 326 2-379 485-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 2.7E-41 6E-46 317.5 5.3 83 483-565 1-84 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 3.6E-34 7.9E-39 307.6 19.2 310 20-378 442-811 (852)
36 KOG0454|consensus 99.7 8.8E-19 1.9E-23 184.2 4.5 136 227-379 82-220 (502)
37 KOG0454|consensus 99.6 5.7E-17 1.2E-21 170.7 1.6 278 52-377 213-498 (502)
38 PF00694 Aconitase_C: Aconitas 97.9 5.2E-07 1.1E-11 83.6 -4.0 58 507-564 3-61 (131)
39 cd01578 AcnA_Mitochon_Swivel M 97.8 8E-06 1.7E-10 77.0 1.7 56 483-564 1-56 (149)
40 PF04412 DUF521: Protein of un 96.4 0.0068 1.5E-07 66.0 7.3 70 238-315 287-356 (400)
41 cd01579 AcnA_Bact_Swivel Bacte 94.4 0.016 3.6E-07 53.2 1.1 30 483-512 1-35 (121)
42 cd00404 Aconitase_swivel Aconi 94.1 0.018 4E-07 50.2 0.8 50 483-547 1-61 (88)
43 COG1679 Predicted aconitase [G 94.1 0.11 2.5E-06 55.8 6.7 69 239-315 288-356 (403)
44 cd01355 AcnX Putative Aconitas 92.6 0.24 5.2E-06 54.0 6.4 70 240-320 278-347 (389)
45 TIGR02084 leud 3-isopropylmala 88.7 0.21 4.5E-06 48.0 1.4 16 481-496 3-18 (156)
46 PRK09238 bifunctional aconitat 85.4 0.55 1.2E-05 55.5 2.7 22 477-499 167-188 (835)
47 PRK00439 leuD 3-isopropylmalat 83.9 0.47 1E-05 45.8 1.0 30 481-511 4-36 (163)
48 PLN00072 3-isopropylmalate iso 80.8 0.72 1.6E-05 47.4 1.1 39 477-517 70-115 (246)
49 cd01576 AcnB_Swivel Aconitase 79.8 0.88 1.9E-05 42.6 1.3 30 482-511 1-30 (131)
50 TIGR02087 LEUD_arch 3-isopropy 77.5 0.91 2E-05 43.5 0.6 15 482-496 4-18 (154)
51 PRK14023 homoaconitate hydrata 77.0 1 2.2E-05 43.7 0.8 16 481-496 4-19 (166)
52 TIGR00117 acnB aconitate hydra 44.6 12 0.00025 44.8 1.6 33 478-511 169-204 (844)
53 cd01577 IPMI_Swivel Aconatase- 42.5 7.9 0.00017 34.1 -0.1 49 483-546 1-62 (91)
54 cd01674 Homoaconitase_Swivel H 38.9 19 0.00041 33.8 1.8 27 485-511 3-33 (129)
55 PRK03600 nrdI ribonucleotide r 37.3 19 0.00041 33.7 1.5 29 323-351 56-87 (134)
56 COG1445 FrwB Phosphotransferas 35.7 47 0.001 30.9 3.8 34 242-276 3-36 (122)
57 TIGR00829 FRU PTS system, fruc 33.8 34 0.00074 29.5 2.4 31 245-276 2-32 (85)
58 PRK01641 leuD isopropylmalate 33.8 35 0.00076 34.2 2.9 34 478-511 9-44 (200)
59 COG1780 NrdI Protein involved 32.8 24 0.00053 33.5 1.4 42 320-379 54-98 (141)
60 PF07972 Flavodoxin_NdrI: NrdI 32.1 16 0.00036 33.7 0.2 42 308-350 41-85 (122)
61 COG0831 UreA Urea amidohydrola 28.7 42 0.00091 29.8 2.1 52 259-313 14-66 (100)
62 TIGR01918 various_sel_PB selen 28.3 48 0.001 36.9 3.0 102 234-345 267-372 (431)
63 TIGR01917 gly_red_sel_B glycin 27.2 71 0.0015 35.6 4.0 81 233-319 266-350 (431)
64 COG0311 PDX2 Predicted glutami 22.6 81 0.0018 31.5 3.1 75 277-354 37-113 (194)
65 PRK10427 putative PTS system f 22.1 93 0.002 28.4 3.2 33 243-276 5-37 (114)
66 COG3970 Fumarylacetoacetate (F 21.1 1.2E+02 0.0025 32.7 4.0 39 283-321 137-189 (379)
No 1
>KOG0452|consensus
Probab=100.00 E-value=6.8e-188 Score=1477.44 Aligned_cols=559 Identities=68% Similarity=1.063 Sum_probs=543.9
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCCc--------------------------------------chH
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVS--------------------------------------SHG 42 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~~--------------------------------------~HQ 42 (566)
||||++++|+||+||||.||+|||||||+|+||+++.++ +||
T Consensus 103 MRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKWgs~af~NmlivPPGsGivHQ 182 (892)
T KOG0452|consen 103 MRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQ 182 (892)
T ss_pred HHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhhhhHhhcceEEeCCCCceeEE
Confidence 899999999999999999999999999999999998766 999
Q ss_pred HHHhhccc-------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhH
Q psy5344 43 VVVTALAL-------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD 92 (566)
Q Consensus 43 v~lE~la~-------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakD 92 (566)
|||||||+ | |||||+|+|++|+|||+.|.+|+|||++|+|+|+++||++|
T Consensus 183 vNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstD 262 (892)
T KOG0452|consen 183 VNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTD 262 (892)
T ss_pred eehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeeh
Confidence 99999999 5 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhh
Q psy5344 93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQ 172 (566)
Q Consensus 93 liL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~ 172 (566)
|+|+|+++||+.|++||||||||+|++.||+.||+||+||+||||||.||||+|+.|++||+.|||+++.++.++ .|+
T Consensus 263 lVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~--~yL 340 (892)
T KOG0452|consen 263 LVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIE--KYL 340 (892)
T ss_pred hhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888 999
Q ss_pred hhhhcCCCCCCCC------cceeeccccCC------------Ccccccccc-----ccccCCC---CCCCCCCCCCcccc
Q psy5344 173 NARLVGFKGYGLK------SQVIEPLNQLG------------FDVVGFGCM-----TCIGNSG---PLDPPIDKLGATGQ 226 (566)
Q Consensus 173 ~ad~~~~~~y~~~------~~viei~~DLs------------~d~v~l~~~-----~~~~~~v---~~~~~p~~~~~~~~ 226 (566)
++ ..++++|.++ .+++++ ||+ ||||++++| +|+.+++ +|.+.|+...+.+.
T Consensus 341 ka-~~~f~~~~~~~q~p~yt~~l~l--~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~ 417 (892)
T KOG0452|consen 341 KA-VKMFRDYNDPSQDPVYTQVLEL--DLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVE 417 (892)
T ss_pred HH-HhhhhhccCcccCcceeeEEEE--ecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEE
Confidence 99 8999998664 349999 999 799999999 6888877 55677877777778
Q ss_pred eeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhC
Q psy5344 227 FEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQL 306 (566)
Q Consensus 227 v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~a 306 (566)
+.++|+.++|+||+|++|+|+||||+|||++|++|+||||||+++|++|+||+||+++|||.+|+.||.++|++++|+++
T Consensus 418 f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SGv~pyL~kl 497 (892)
T KOG0452|consen 418 FQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSESGVLPYLEKL 497 (892)
T ss_pred EEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhhhhhhccchhHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccccCCCCCC
Q psy5344 307 GFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEP 386 (566)
Q Consensus 307 G~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dp 386 (566)
||.|+||||++||||+|+|++.+.++|.+|++|+++|+|+|||||||+||.+++||||||+||+||||+|++++||++||
T Consensus 498 GF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaGtV~IDfe~ep 577 (892)
T KOG0452|consen 498 GFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAGTVNIDFETEP 577 (892)
T ss_pred CceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcceeecceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCCC
Q psy5344 387 IGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGR 466 (566)
Q Consensus 387 lg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp~f~~~~~ 466 (566)
||++++||.|||+||||+++||+++++++|.|+||+++|+.|+.|++.||.|++|++.+|+||++||||++||||++|+.
T Consensus 578 lg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~STYI~~ppfF~~mT~ 657 (892)
T KOG0452|consen 578 LGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGMTR 657 (892)
T ss_pred cccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCCCceecCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhh
Q psy5344 467 DVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKL 546 (566)
Q Consensus 467 ~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~ 546 (566)
+++. +++|++|+||+.||||||||||||||+|.++|||+|||.+||+.|+|||||||||||+|||.|||||||||.|+|
T Consensus 658 ~~p~-~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vMaRGTFANIrlvNkl 736 (892)
T KOG0452|consen 658 DLPG-PQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNKL 736 (892)
T ss_pred CCCC-cccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhhhcccchhhHHHHHH
Confidence 9888 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeecCCCccccC
Q psy5344 547 VSKPGPKTVHFPSLEEGGQ 565 (566)
Q Consensus 547 ~~~~g~~t~~~p~~~~~~~ 565 (566)
+.+.|+.|+|+|+||++++
T Consensus 737 ~~k~gP~TvHiPsge~ldv 755 (892)
T KOG0452|consen 737 LSKVGPKTVHIPSGEELDV 755 (892)
T ss_pred hcccCCceEecCCCCeecH
Confidence 9999999999999999886
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=2.4e-179 Score=1504.24 Aligned_cols=549 Identities=58% Similarity=0.900 Sum_probs=515.8
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCCc--------------------------------------chH
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVS--------------------------------------SHG 42 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~~--------------------------------------~HQ 42 (566)
|||+++++|+||++|||.||||||||||||||++++.++ |||
T Consensus 142 mr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flkw~~~af~~~~vvpPG~GI~HQ 221 (936)
T PLN00070 142 MRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQ 221 (936)
T ss_pred HHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhhhhhhhhcCccccCCCCceEee
Confidence 899999999999999999999999999999998886554 999
Q ss_pred HHHhhccc-------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhH
Q psy5344 43 VVVTALAL-------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD 92 (566)
Q Consensus 43 v~lE~la~-------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakD 92 (566)
||+||||+ | |||||+|+|++|+|||+||++||||+|+|+|+|++||||||
T Consensus 222 V~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~vPevvgV~LtG~L~~GVtAKD 301 (936)
T PLN00070 222 VNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 301 (936)
T ss_pred echhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEeeCCCEEEEEEEeecCCCCCHhH
Confidence 99998753 6 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhh
Q psy5344 93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQ 172 (566)
Q Consensus 93 liL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~ 172 (566)
|||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||+++.+++++ +|+
T Consensus 302 liL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~YL~~tgR~~~~~~~v~--~y~ 379 (936)
T PLN00070 302 LVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIE--AYL 379 (936)
T ss_pred HHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHHHHHhCCCCHHHHHHHH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888777 999
Q ss_pred hhhhcCCCCCC----C--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccc--------------------
Q psy5344 173 NARLVGFKGYG----L--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQ-------------------- 226 (566)
Q Consensus 173 ~ad~~~~~~y~----~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~-------------------- 226 (566)
++ |++|+++. + .++++|| |||. | .|++++|.+|++...+..
T Consensus 380 k~-~~l~~~~~~~D~da~Y~~viei--DLs~----v------eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~ 446 (936)
T PLN00070 380 RA-NKMFVDYNEPQQERVYSSYLEL--DLED----V------EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAV 446 (936)
T ss_pred Hh-ccccccccCCCCCCceeEEEEE--Eccc----c------eEecCCCcChhcCcCHHHhhhhHHHhhccccccccccc
Confidence 99 88988532 2 2669999 9982 1 233555666665432211
Q ss_pred ----------eeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHH
Q psy5344 227 ----------FEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRE 296 (566)
Q Consensus 227 ----------v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~ 296 (566)
+.++|++..+++|.|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||++
T Consensus 447 ~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V~~~l~~ 526 (936)
T PLN00070 447 PKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLK 526 (936)
T ss_pred chhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHH
Confidence 1245666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcC
Q psy5344 297 SQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAG 376 (566)
Q Consensus 297 ~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG 376 (566)
+||+++|+++||+|++||||+||||+++++++++++|.+|++++++|||+||||+|||||..+++|||||++||||||+|
T Consensus 527 ~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVaA~AlaG 606 (936)
T PLN00070 527 SGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 606 (936)
T ss_pred CCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred ccccCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCC
Q psy5344 377 TVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIK 456 (566)
Q Consensus 377 ~I~~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~ 456 (566)
+|+||+++||||+++||++|||+||||+.+||++++.++++|++|++.|.+++++++.|+.|++|++.+|+||++||||+
T Consensus 607 ~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~~Styi~ 686 (936)
T PLN00070 607 TVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIH 686 (936)
T ss_pred CcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccc
Q psy5344 457 RPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGT 536 (566)
Q Consensus 457 ~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgt 536 (566)
+||||++++..+++ ..+|++||||+|+|||||||||||||+|+++||||+||.++||+++|||||||||||||||||||
T Consensus 687 ~pp~f~~~~~~~~~-~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgt 765 (936)
T PLN00070 687 EPPYFKNMTMSPPG-PHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGT 765 (936)
T ss_pred cCCCCCCcCCCCCC-CcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchhhhcee
Confidence 99999999887766 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhC-CCCCCceeecCCCccccC
Q psy5344 537 FANIRIVNKLV-SKPGPKTVHFPSLEEGGQ 565 (566)
Q Consensus 537 f~n~r~~n~~~-~~~g~~t~~~p~~~~~~~ 565 (566)
|+||||+|+|+ +++||+|+|+|+||+|++
T Consensus 766 FaNir~~N~~~~g~~g~~t~~~p~g~~~~i 795 (936)
T PLN00070 766 FANIRIVNKLLKGEVGPKTVHIPTGEKLSV 795 (936)
T ss_pred ccchhhhhhhcCCCcCCeeEecCCCceeeH
Confidence 99999999998 589999999999999864
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=2.8e-179 Score=1501.79 Aligned_cols=549 Identities=62% Similarity=0.955 Sum_probs=515.8
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCCc--------------------------------------chH
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVS--------------------------------------SHG 42 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~~--------------------------------------~HQ 42 (566)
|||+++++|+||.+|||.||+||+||||||+|+++..++ |||
T Consensus 110 mR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQ 189 (898)
T PTZ00092 110 MRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFKNLLIVPPGSGIVHQ 189 (898)
T ss_pred HHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHhhhhhhcCCcccCCCCceece
Confidence 899999999999999999999999999999997655443 999
Q ss_pred HHHhhccc-------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhH
Q psy5344 43 VVVTALAL-------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD 92 (566)
Q Consensus 43 v~lE~la~-------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakD 92 (566)
||+||||+ | |||||+|+|++|+|||+||++||||+|+|+|+|++||||||
T Consensus 190 V~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vPevvgV~LtG~L~~gVtakD 269 (898)
T PTZ00092 190 VNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATD 269 (898)
T ss_pred echhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcCHHH
Confidence 99999883 6 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhh
Q psy5344 93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQ 172 (566)
Q Consensus 93 liL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~ 172 (566)
|||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||+++++++++ +|.
T Consensus 270 liL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve--~y~ 347 (898)
T PTZ00092 270 LVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIE--KYL 347 (898)
T ss_pred HHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHHHhcccchHHHHHHH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988888887 899
Q ss_pred hhhhcCCC-CCCC--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccce----------------------
Q psy5344 173 NARLVGFK-GYGL--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQF---------------------- 227 (566)
Q Consensus 173 ~ad~~~~~-~y~~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v---------------------- 227 (566)
++ |.+|+ .+.+ +++++|| |||. + .|++++|.+|+++..+..+
T Consensus 348 ka-~~l~~~~D~da~Y~~viei--DLs~----v------eP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~~~~ 414 (898)
T PTZ00092 348 KA-NGLFRTYAEQIEYSDVLEL--DLST----V------VPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEE 414 (898)
T ss_pred HH-HHHhhcCCCCCceeEEEEE--Eccc----c------eEeccCCCChhhccCccccCCCHHHhhhhhhhhhccCCCcc
Confidence 99 88998 3333 3679999 9982 1 2345566666654332221
Q ss_pred --------eecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCC
Q psy5344 228 --------EFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQV 299 (566)
Q Consensus 228 --------~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl 299 (566)
.++|.+.+++||+|++|||||||||||||+|+||+||||||+++|+||+||||++|+|||++|++||+++||
T Consensus 415 ~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl 494 (898)
T PTZ00092 415 KHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASGL 494 (898)
T ss_pred ccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHcCc
Confidence 124555688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 300 IEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 300 l~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+++|+++||+|++||||+|||||++++++++++|.+|++++++|||+||||+|||||..+++|||||+|||||||+|+|+
T Consensus 495 ~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~ 574 (898)
T PTZ00092 495 LKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVN 574 (898)
T ss_pred HHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCCCCC
Q psy5344 380 IDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPP 459 (566)
Q Consensus 380 ~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp 459 (566)
+|+++||||+|++|++|||+||||+.+||++++..+++|++|.+.|.++++++++|+.|+++++.+|+||++|||||+||
T Consensus 575 ~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp 654 (898)
T PTZ00092 575 IDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNPP 654 (898)
T ss_pred cccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhcccccc
Q psy5344 460 FFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFAN 539 (566)
Q Consensus 460 ~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n 539 (566)
||++++.++.+ .++|++||||+++|||||||||||||+|+++||||+||.++||+|+||||||||||||||||||||+|
T Consensus 655 ~f~~~~~~~~~-~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~RgtF~N 733 (898)
T PTZ00092 655 FFQTMELEPPP-IKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRGTFAN 733 (898)
T ss_pred CccccccCCCC-CCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhcceeccc
Confidence 99999988777 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhCCCCCCceeecCCCccccC
Q psy5344 540 IRIVNKLVSKPGPKTVHFPSLEEGGQ 565 (566)
Q Consensus 540 ~r~~n~~~~~~g~~t~~~p~~~~~~~ 565 (566)
|||+|+|+++|||||+|+|+||+|++
T Consensus 734 iri~N~l~g~~g~~t~~~p~g~~~~i 759 (898)
T PTZ00092 734 IRLINKLCGKVGPNTVHVPTGEKMSI 759 (898)
T ss_pred cceeeeeccCCCCceEeCCCCcEecH
Confidence 99999999999999999999999864
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.6e-179 Score=1498.14 Aligned_cols=549 Identities=56% Similarity=0.876 Sum_probs=517.2
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCCc--------------------------------------chH
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVS--------------------------------------SHG 42 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~~--------------------------------------~HQ 42 (566)
|||+++++|+||.+|||.|||||+||||||+|+++..++ |||
T Consensus 86 mrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~GI~Hq 165 (876)
T TIGR01341 86 MREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTGIIHQ 165 (876)
T ss_pred HHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCCeece
Confidence 899999999999999999999999999999998776653 999
Q ss_pred HHHhhccc-----------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCC
Q psy5344 43 VVVTALAL-----------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYV 88 (566)
Q Consensus 43 v~lE~la~-----------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gV 88 (566)
||+|+||+ | |||||+|++++|+|||+||++||||+|+|+|+|++||
T Consensus 166 V~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gV 245 (876)
T TIGR01341 166 VNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGV 245 (876)
T ss_pred echhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCc
Confidence 99999653 6 9999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhh
Q psy5344 89 TSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRW 168 (566)
Q Consensus 89 takDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~ 168 (566)
|||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||+++++++++
T Consensus 246 tAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~l~~- 324 (876)
T TIGR01341 246 TATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVE- 324 (876)
T ss_pred CHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred hhhhhhhhcCCCCC-CC--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCccccee-----------------
Q psy5344 169 RSGQNARLVGFKGY-GL--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFE----------------- 228 (566)
Q Consensus 169 ~~y~~ad~~~~~~y-~~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~----------------- 228 (566)
+|.++ |++|+++ ++ .++++|| |||. +.|++++|.+|+++..+..+.
T Consensus 325 -~y~k~-~~l~~~d~~~a~Y~~viei--DLs~----------veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~ 390 (876)
T TIGR01341 325 -KYARA-QGLFYDDSEEPRYTDVVEL--DLSD----------VEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFT 390 (876)
T ss_pred -HHHHh-cccccCCCCCCceeEEEEE--Eccc----------ceeeccCCCChhhccChhhcchhhhhHhhhhccccccc
Confidence 89898 8888865 33 3679999 9982 234567777887754333221
Q ss_pred ---------ecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCC
Q psy5344 229 ---------FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQV 299 (566)
Q Consensus 229 ---------~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl 299 (566)
++|.+.+++||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||
T Consensus 391 ~~~~~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl 470 (876)
T TIGR01341 391 LRKEPLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGL 470 (876)
T ss_pred chhhhhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCc
Confidence 12334678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 300 IEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 300 l~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+++|+++||+|++||||+||||||+|+++++++|.+|++++++|||+||||+||||+..+++|||||++||||||+|+|+
T Consensus 471 ~~~L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~ 550 (876)
T TIGR01341 471 LPYLEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNID 550 (876)
T ss_pred HHHHHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCCCCC
Q psy5344 380 IDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPP 459 (566)
Q Consensus 380 ~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp 459 (566)
+|+++||||.|+||++|||+||||+.+||++++.++++++||++.|.++++++++|+.|++|++..|+||++|||||+||
T Consensus 551 ~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp 630 (876)
T TIGR01341 551 INLYTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPP 630 (876)
T ss_pred cCccCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhcccccc
Q psy5344 460 FFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFAN 539 (566)
Q Consensus 460 ~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n 539 (566)
||++|+.++.+ .++|++||||+++|||||||||||||+|+++||||+||+++||+|+||||||||||||||||||||+|
T Consensus 631 ~f~~~~~~~~~-~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFan 709 (876)
T TIGR01341 631 FFEEMKQDPEE-VEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFAN 709 (876)
T ss_pred CCCccccCCCC-CCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhccc
Confidence 99999988766 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhC-CCCCCceeecCCCccccC
Q psy5344 540 IRIVNKLV-SKPGPKTVHFPSLEEGGQ 565 (566)
Q Consensus 540 ~r~~n~~~-~~~g~~t~~~p~~~~~~~ 565 (566)
+||+|+|+ ++|||||+|+|+||+|++
T Consensus 710 ir~~N~l~~g~egg~t~~~p~g~~~~i 736 (876)
T TIGR01341 710 IRIKNLMVKGKEGGYTVHFPDGKVASV 736 (876)
T ss_pred chhhhhcccCccCceeEecCCCccccH
Confidence 99999999 589999999999999874
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=8.4e-178 Score=1491.10 Aligned_cols=549 Identities=54% Similarity=0.833 Sum_probs=516.9
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCCc--------------------------------------chH
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVS--------------------------------------SHG 42 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~~--------------------------------------~HQ 42 (566)
|||+++++|+||.++||.+|||++||||||+|+++..++ |||
T Consensus 103 mr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~pPg~GI~Hq 182 (889)
T PRK12881 103 MRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIMHQ 182 (889)
T ss_pred HHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhChHHHHHHHccCCCCCCCCCCccce
Confidence 899999999999999999999999999999998776653 999
Q ss_pred HHHhhccc-----------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCC
Q psy5344 43 VVVTALAL-----------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYV 88 (566)
Q Consensus 43 v~lE~la~-----------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gV 88 (566)
||+|+||+ | |||||+|+|++|+|||+||++||||+|+|+|+|++||
T Consensus 183 V~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlgq~~~~~vPevigV~l~G~L~~gV 262 (889)
T PRK12881 183 VNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQPVYMLIPDVVGVELTGKLREGV 262 (889)
T ss_pred EchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCc
Confidence 99999663 6 9999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhh
Q psy5344 89 TSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRW 168 (566)
Q Consensus 89 takDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~ 168 (566)
|||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||+++++++++
T Consensus 263 tAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~l~e- 341 (889)
T PRK12881 263 TATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVE- 341 (889)
T ss_pred CHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecCChhHHHHHHhcccchHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hhhhhhhhcCCCCC-CC--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCccccee-----------------
Q psy5344 169 RSGQNARLVGFKGY-GL--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFE----------------- 228 (566)
Q Consensus 169 ~~y~~ad~~~~~~y-~~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~----------------- 228 (566)
+|.++ |++|+.. ++ .++++|| |||. +.|++++|.+|+++..+..+.
T Consensus 342 -~y~ka-~~l~~~~d~~a~Y~~viei--DLs~----------veP~vAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~ 407 (889)
T PRK12881 342 -AYAKA-QGLWGDPKAEPRYTRTLEL--DLST----------VAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGFA 407 (889)
T ss_pred -HHHHH-HHhhcCcCCCCceeEEEEE--Eccc----------eeEeccCCCChhhCcCchhcCcCHHHHhhhHHHhhhhh
Confidence 89999 8998852 22 2669999 9982 245577888888865443322
Q ss_pred e---cCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHh
Q psy5344 229 F---EGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQ 305 (566)
Q Consensus 229 ~---~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~ 305 (566)
+ .+....++||+|++|||||||||||||+|+||++|||||++||+||+||||++|+|||++|++||+++||+++|++
T Consensus 408 ~~~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~ 487 (889)
T PRK12881 408 KKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVTEYLERAGLLPYLEK 487 (889)
T ss_pred cccccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHHHHHHHHHcCcHHHHHH
Confidence 0 1123468899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccccCCCCC
Q psy5344 306 LGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKE 385 (566)
Q Consensus 306 aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~d 385 (566)
+||+|++||||+||||+|+++++++++|.+|++++++|||+||||+||||+..+++|||||++||||||+|+|++|+++|
T Consensus 488 aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~d 567 (889)
T PRK12881 488 LGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLVVAYALAGTVRRDLMTE 567 (889)
T ss_pred cCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEECCHHHHHHHHhcCceecCCCCC
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCC
Q psy5344 386 PIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMG 465 (566)
Q Consensus 386 plg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp~f~~~~ 465 (566)
|||+++||++|||+||||+.+||++++.+.+++++|.+.|+++++++++|+.|++|.+.+|+||++||||++||||++|.
T Consensus 568 plg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~wd~~StyI~~pPff~~~~ 647 (889)
T PRK12881 568 PLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDFSM 647 (889)
T ss_pred CcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCCeeccCCCCCcccCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhh
Q psy5344 466 RDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNK 545 (566)
Q Consensus 466 ~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~ 545 (566)
.++.+ +.+|++||||+++|||||||||||||+|+++||||+||+++||+|+||||||||||||||||||||+|+||+|+
T Consensus 648 ~~~~~-~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rRgN~evm~rgtF~nir~~N~ 726 (889)
T PRK12881 648 GPAAS-IATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVMMRGTFANVRIKNL 726 (889)
T ss_pred cCCCC-CCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHhhhhccccCcccce
Confidence 88777 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-CCCCceeecCCCccccC
Q psy5344 546 LVS-KPGPKTVHFPSLEEGGQ 565 (566)
Q Consensus 546 ~~~-~~g~~t~~~p~~~~~~~ 565 (566)
|++ +|||||+|+|+||+|++
T Consensus 727 l~~~~egg~t~~~p~g~~~~i 747 (889)
T PRK12881 727 MIPGKEGGLTLHQPSGEVLSI 747 (889)
T ss_pred eccccccCeeEeCCCCcEeeH
Confidence 995 79999999999999874
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=4e-177 Score=1483.08 Aligned_cols=549 Identities=57% Similarity=0.896 Sum_probs=517.4
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCCc--------------------------------------chH
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVS--------------------------------------SHG 42 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~~--------------------------------------~HQ 42 (566)
|||+++++|+||++|||.+||+|+||||||+|+++..++ |||
T Consensus 104 mr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~fLkw~~~~f~~~~v~pPg~GI~Hq 183 (888)
T PRK09277 104 MRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGICHQ 183 (888)
T ss_pred HHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHhcCCCCCCCCCCccce
Confidence 899999999999999999999999999999998766543 999
Q ss_pred HHHhhccc----------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCC
Q psy5344 43 VVVTALAL----------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVT 89 (566)
Q Consensus 43 v~lE~la~----------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVt 89 (566)
||+||||+ | |||||+|+|++|+|||+||++||||+|+|+|+|++|||
T Consensus 184 V~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVt 263 (888)
T PRK09277 184 VNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVT 263 (888)
T ss_pred echhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcc
Confidence 99998662 6 99999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhh
Q psy5344 90 STDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWR 169 (566)
Q Consensus 90 akDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~ 169 (566)
||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||+++++++++
T Consensus 264 AkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~~~e-- 341 (888)
T PRK09277 264 ATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVE-- 341 (888)
T ss_pred HhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCChhHHHHHHhcCCChHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hhhhhhhcCCCC-CCC--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCccccee------------------
Q psy5344 170 SGQNARLVGFKG-YGL--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFE------------------ 228 (566)
Q Consensus 170 ~y~~ad~~~~~~-y~~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~------------------ 228 (566)
+|.++ |.+|+. +++ +++++|| |||. +.|++++|.+|+++..+..+.
T Consensus 342 ~y~ka-~~~~~~~D~~a~Y~~viei--DLs~----------leP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~ 408 (888)
T PRK09277 342 AYAKA-QGLWRDPLEEPVYTDVLEL--DLST----------VEPSLAGPKRPQDRIPLSDVKEAFAKSAELGVQGFGLDE 408 (888)
T ss_pred HHHHH-HhhhccCCCCCCEEEEEEE--Eccc----------eeEecCCCCCcccCcChhhcCcchhhhchhhhhhhhhhh
Confidence 89888 888874 333 2679999 9982 234567788888765433321
Q ss_pred -ecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCC
Q psy5344 229 -FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLG 307 (566)
Q Consensus 229 -~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG 307 (566)
++|..+++.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++|
T Consensus 409 ~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aG 488 (888)
T PRK09277 409 AEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYLEKAGLLPYLEALG 488 (888)
T ss_pred hhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHHHHHHHHCChHHHHHHcC
Confidence 1244578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccccCCCCCCc
Q psy5344 308 FDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPI 387 (566)
Q Consensus 308 ~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dpl 387 (566)
|+|++||||+||||+|+++++++++|.+|++++++|||+||||+||||+..+++|||||++||||||+|+|++|+++|||
T Consensus 489 f~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~I~~d~~~dpl 568 (888)
T PRK09277 489 FNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYALAGTVDIDLEKDPL 568 (888)
T ss_pred CEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCccccCCCCCCc
Confidence 99999999999999999999999899999999899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCCCC
Q psy5344 388 GTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRD 467 (566)
Q Consensus 388 g~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp~f~~~~~~ 467 (566)
|+++||++|||+||||+.+||++++.+++++++|++.|.+++++++.|+.|+++++..|+||++|||||+||||++++.+
T Consensus 569 g~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~ 648 (888)
T PRK09277 569 GTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAE 648 (888)
T ss_pred ccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCccccCCCCCcccCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhhC
Q psy5344 468 VTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLV 547 (566)
Q Consensus 468 ~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~~ 547 (566)
+++ +.+|.+||||+++|||||||||||||+|+++||||+||+++||+++||||||||||||||||||||+|+||+|+|+
T Consensus 649 ~~~-~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~RgtfaNir~~N~l~ 727 (888)
T PRK09277 649 PGP-VRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRGTFANIRIRNEMV 727 (888)
T ss_pred CCC-CCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccccchhhhheeccccchhhhcc
Confidence 766 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCceeecCCCccccC
Q psy5344 548 -SKPGPKTVHFPSLEEGGQ 565 (566)
Q Consensus 548 -~~~g~~t~~~p~~~~~~~ 565 (566)
++|||||+|+|+||+|++
T Consensus 728 ~g~egg~t~~~p~g~~~~i 746 (888)
T PRK09277 728 PGVEGGYTRHFPEGEVMSI 746 (888)
T ss_pred cCCccceEEECCCCcEeeH
Confidence 579999999999999875
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=1.9e-175 Score=1463.30 Aligned_cols=542 Identities=41% Similarity=0.695 Sum_probs=506.1
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccC-CCCc--------------------------------------ch
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSR-SGVS--------------------------------------SH 41 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~-~~~~--------------------------------------~H 41 (566)
|||+++++|+||++|||.||+|||||||||+|+++ +.++ ||
T Consensus 93 mr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~ppG~GI~H 172 (858)
T TIGR02333 93 LRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMH 172 (858)
T ss_pred hHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCCCCCEee
Confidence 89999999999999999999999999999999999 5665 99
Q ss_pred HHHHhhcc----------c---------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChh
Q psy5344 42 GVVVTALA----------L---------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTST 91 (566)
Q Consensus 42 Qv~lE~la----------~---------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtak 91 (566)
|||+|+|| . | |||||+|++++|+|||+||++||||+|+|+|+|++|||||
T Consensus 173 QV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~~gVtak 252 (858)
T TIGR02333 173 QINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITAT 252 (858)
T ss_pred eEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecCCCCCHh
Confidence 99999955 2 6 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhh
Q psy5344 92 DLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSG 171 (566)
Q Consensus 92 DliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y 171 (566)
||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||+++.+++++ +|
T Consensus 253 DliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve--~y 330 (858)
T TIGR02333 253 DIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKLVE--TY 330 (858)
T ss_pred HHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHHHH--HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888887 89
Q ss_pred hhhhhcCCCCC-CC--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCccccee---e----cC-ccceeccce
Q psy5344 172 QNARLVGFKGY-GL--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFE---F----EG-KTYTLKHGS 240 (566)
Q Consensus 172 ~~ad~~~~~~y-~~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~---~----~g-~~~~l~~g~ 240 (566)
.++ |++|++. ++ +++++|| |||. +.|++++|..|++...+..+. . ++ ....+.||+
T Consensus 331 ~k~-~~l~~d~d~~a~Y~~viei--DLs~----------leP~VAgP~~Pd~~vpl~e~~~~~~~~~~~~~~~g~l~~g~ 397 (858)
T TIGR02333 331 AKA-AGLWADSLKHAVYERVLEF--DLSS----------VVRNMAGPSNPHARVPTSDLAARGIAGPAEEQPEGLMPDGA 397 (858)
T ss_pred HHH-HHhhcCcCCCCCeEEEEEE--Eccc----------ceecccCCCChhhcCCHHHhhhccccccccccccCcccCCc
Confidence 998 8899852 22 3679999 9982 245577888888865433322 0 00 012578999
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCcccccc
Q psy5344 241 VVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIG 320 (566)
Q Consensus 241 V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG 320 (566)
|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||+|++||||+|||
T Consensus 398 V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG 477 (858)
T TIGR02333 398 VIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQLGFGIVAFACTTCNG 477 (858)
T ss_pred eeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccccCCCCCCccCCCCCCceeccc
Q psy5344 321 NSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRD 400 (566)
Q Consensus 321 ~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~d 400 (566)
|||+|++++.+.|.++++++++|||+||||+||||+..+++|||||++||||||+|+|+||+++||||.|+||++|||+|
T Consensus 478 ~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~d 557 (858)
T TIGR02333 478 MSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGVDADGKPIRLKD 557 (858)
T ss_pred cCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCcCccccCCCCCeEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCceE
Q psy5344 401 IWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARV 480 (566)
Q Consensus 401 iwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp~f~~~~~~~~~~~~~i~~arv 480 (566)
|||+.+||++++.+.++|++|++.|.+++++++ ++++.+++|+||++|||||+||||+++. ++ .++|++||+
T Consensus 558 iwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~~---~~-~~~i~~arv 629 (858)
T TIGR02333 558 IWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGAL---AG-ERTLKGMRP 629 (858)
T ss_pred CCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCCC---Cc-ccCccCcEe
Confidence 999999999999999999999999999999887 6788899999999999999999999983 33 689999999
Q ss_pred EEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhhCC-----CCCCcee
Q psy5344 481 LLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVS-----KPGPKTV 555 (566)
Q Consensus 481 L~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~~~-----~~g~~t~ 555 (566)
|+++|||||||||||||+|+++||||+||+++|+.++||||||||||||||||||||+|+||+|+|++ ++||||+
T Consensus 630 L~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~~~~g~~~~g~~t~ 709 (858)
T TIGR02333 630 LAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVKNDGSVKQGSLAR 709 (858)
T ss_pred eeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhhhccccCccccCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 4899999
Q ss_pred ecCCCccccC
Q psy5344 556 HFPSLEEGGQ 565 (566)
Q Consensus 556 ~~p~~~~~~~ 565 (566)
|+|+||+|++
T Consensus 710 ~~p~g~~~~i 719 (858)
T TIGR02333 710 IEPEGKVTRM 719 (858)
T ss_pred ecCCCcEeeH
Confidence 9999999874
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=3.5e-172 Score=1421.76 Aligned_cols=536 Identities=56% Similarity=0.869 Sum_probs=503.7
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCCc--------------------------------------chH
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVS--------------------------------------SHG 42 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~~--------------------------------------~HQ 42 (566)
|||+++++|+||++|||.+|+||+||||+++|.++..++ |||
T Consensus 95 mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~n~~vvPPGtGIiHQ 174 (861)
T COG1048 95 MRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQ 174 (861)
T ss_pred HHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcCCcEEECCCCceeee
Confidence 899999999999999999999999999999998885433 999
Q ss_pred HHHhhccc-------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhH
Q psy5344 43 VVVTALAL-------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD 92 (566)
Q Consensus 43 v~lE~la~-------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakD 92 (566)
|||||||. | |||||+|||++|+|||+||++|+||||+|+|+|++||||||
T Consensus 175 VnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatD 254 (861)
T COG1048 175 VNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATD 254 (861)
T ss_pred ehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHH
Confidence 99999987 6 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhh
Q psy5344 93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQ 172 (566)
Q Consensus 93 liL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~ 172 (566)
|||+|+++||++|++||||||||||+++||+++|+|||||+|||||||||||+|++|++||+.|||.+++++++| +|+
T Consensus 255 lvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~~~~i~lve--~y~ 332 (861)
T COG1048 255 LVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVE--AYA 332 (861)
T ss_pred HHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCchHHHHHHH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 999
Q ss_pred hhhhcCCCCCCC----CcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccc-----------------eeecC
Q psy5344 173 NARLVGFKGYGL----KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQ-----------------FEFEG 231 (566)
Q Consensus 173 ~ad~~~~~~y~~----~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~-----------------v~~~g 231 (566)
++ |++|...++ .++++|| |||. + .+.++.|..|++...+.. +...+
T Consensus 333 ~~-~~l~~~~~~~~a~Y~~~lel--DLS~----v------~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 399 (861)
T COG1048 333 KA-QGLWYDPADKDAEYDKVLEL--DLST----V------EPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLLG 399 (861)
T ss_pred HH-hcccCCccccCCccceeEEE--Ehhh----C------cccccCCCChhhceEHHHHHHHHHHhhhhhhccccccccc
Confidence 99 999987542 2669999 9992 1 233444555555322211 11122
Q ss_pred ccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEe
Q psy5344 232 KTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVV 311 (566)
Q Consensus 232 ~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~ 311 (566)
. .+.+|+|.||+|||||||||||+|+||+||||+|+++|++++|||||+|+|||++|.+||+++||+++|+++||+++
T Consensus 400 ~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl~~~L~~lGf~iv 477 (861)
T COG1048 400 K--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPYLEKLGFNIV 477 (861)
T ss_pred c--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCCHHHHHhcCCEEe
Confidence 2 57789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccccCCCCCCccCCC
Q psy5344 312 GFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNK 391 (566)
Q Consensus 312 ~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~ 391 (566)
++||||||||||+|++++++.|.++++++++|+|+||||+||+||..+++|||||+||+||||||++++|+++||+|.++
T Consensus 478 ~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~~d~~~~~lg~~~ 557 (861)
T COG1048 478 GYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLTTDPLGTDN 557 (861)
T ss_pred ccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccccCcccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q psy5344 392 QGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPG 471 (566)
Q Consensus 392 ~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp~f~~~~~~~~~~ 471 (566)
+|++|||+||||+.+||.+.+.+.+.+++|++.|.++|+ |+.+++|++++|.|+++||||+.||||+.+...+
T Consensus 558 ~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~pP~f~~~~~~~--- 630 (861)
T COG1048 558 DGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPPFFDGMGAEP--- 630 (861)
T ss_pred CCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccCCCccccccccc---
Confidence 999999999999999999999999999999999999997 9999999999999999999999999999998774
Q ss_pred CCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhhCCCCC
Q psy5344 472 DRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPG 551 (566)
Q Consensus 472 ~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~~~~~g 551 (566)
..|+++|+|++||||||||||||||+|+++||||+||.++||+++||||||||||||||||||||+|+|+||+|++.||
T Consensus 631 -~~~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfaNir~~n~~~~~~g 709 (861)
T COG1048 631 -KPIKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGEG 709 (861)
T ss_pred -cccccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhcccccccccccccC
Confidence 3399999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CceeecCCCc
Q psy5344 552 PKTVHFPSLE 561 (566)
Q Consensus 552 ~~t~~~p~~~ 561 (566)
|||+|+|+||
T Consensus 710 g~t~~~p~g~ 719 (861)
T COG1048 710 GYTIHQPSGE 719 (861)
T ss_pred cceeecCCch
Confidence 9999999997
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=1.9e-118 Score=1003.71 Aligned_cols=469 Identities=26% Similarity=0.347 Sum_probs=390.8
Q ss_pred HHhcCCCCCccCCCCCeeEEeccCCcccccC--------------------------------CCCcchHHHHhhccc--
Q psy5344 5 VKSLNGDPQKINPICPSDLVIDHSVQVDFSR--------------------------------SGVSSHGVVVTALAL-- 50 (566)
Q Consensus 5 ~~~~g~dp~~inp~~p~~lviDHsv~~d~~~--------------------------------~~~~~HQv~lE~la~-- 50 (566)
++++|.+ +|.+|+++++||++|+++.. ..++|||||+|+|+.
T Consensus 73 f~~~g~~----~v~~P~~v~~DH~~~~~~~~~~~~~~a~~~N~e~~~~lr~~a~~~gi~~~~~g~GI~Hqv~~E~~a~PG 148 (745)
T TIGR01340 73 FMTCGLP----QVAVPASIHCDHLIVGQKGGDKDLARAIATNKEVFDFLESAGKKYGIGFWKPGSGIIHQIVLENYAFPG 148 (745)
T ss_pred HHHcCCC----CCCCCCeEEeCCCCccccCccccHHHHhHhHHHHHHHHHHHHHHCCCEEECCCCCeeceEchhhccCCC
Confidence 4556652 66778899999999865211 123499999999988
Q ss_pred --------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEE
Q psy5344 51 --------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFV 111 (566)
Q Consensus 51 --------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~v 111 (566)
| |||||+|++++|+|++|||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|
T Consensus 149 ~~ivGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~v 228 (745)
T TIGR01340 149 LMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIV 228 (745)
T ss_pred CeEEccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEE
Confidence 7 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhh-hh---hhhhhhhhhhcCCCCCCCCcc
Q psy5344 112 EFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTK-VS---RWRSGQNARLVGFKGYGLKSQ 187 (566)
Q Consensus 112 Ef~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~-~~---~~~~y~~ad~~~~~~y~~~~~ 187 (566)
||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||++.... .+ .| ..+++ +..+.| ++
T Consensus 229 Ef~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~-~~~~~--D~~a~Y---~~ 302 (745)
T TIGR01340 229 EYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF-FKLKA--DEGAQY---DE 302 (745)
T ss_pred EEeCcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc-ccccC--CCCCCe---EE
Confidence 99999999999999999999999999999999999999999999999875422 11 11 11222 122334 77
Q ss_pred eeeccccCCCccccccccccccCCCCCCCCCCCCCcccceeecCc----cceeccceEEEEEeecCCCCCChHHHHHHHH
Q psy5344 188 VIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGK----TYTLKHGSVVIAAITSCTNTSNPSVMLGAGL 263 (566)
Q Consensus 188 viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~----~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 263 (566)
+++| |||. +.|++++|++|+++..+..+ .+. .++ .+|+|||||||||||+||++.|| .
T Consensus 303 ~i~i--Dls~----------leP~vA~P~~Pdn~~~v~e~--~~~~~~~g~~---~~Id~a~IGSCTNgr~~Dl~~AA-~ 364 (745)
T TIGR01340 303 LIEI--DLSK----------LEPHINGPFTPDLSTPISKF--KETVQKNGWP---EKLSAGLIGSCTNSSYEDMSRCA-S 364 (745)
T ss_pred EEEE--Eccc----------eeEeecCCCChhcccChHHh--CchhhhcCCC---ceecEEEEEcCCCCCHHHHHHHH-H
Confidence 9999 9982 24557888899987644433 221 011 26999999999999999966655 5
Q ss_pred HHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEee
Q psy5344 264 LAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGV 343 (566)
Q Consensus 264 lak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~V 343 (566)
++|+|+ |++++|.||++|+|||++|++||+++|++++|+++||.|.+||||+|+|+++++. .+.+|+.+ ++|
T Consensus 365 ilk~a~--~~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~~~~ge~~-~~v 436 (745)
T TIGR01340 365 IVKDAE--QAGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----DVKKGEPN-TIL 436 (745)
T ss_pred Hhhhhh--hCCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----ccCCCCce-EEE
Confidence 556665 4567788999999999999999999999999999999999999999999987543 35788865 469
Q ss_pred ecccCCCcCCcC-CCcCceeecCHHHHHHHHHcCccccCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhH
Q psy5344 344 LSGNRNFEGRIH-PNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFR 422 (566)
Q Consensus 344 sS~NRNF~GR~g-~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~ 422 (566)
||+||||+|||| +..+++|||||++||||||+|+|++|+++||| .|++|++|||+ ||+.+|+++. +|
T Consensus 437 st~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~--------~~- 504 (745)
T TIGR01340 437 TSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK--------GF- 504 (745)
T ss_pred EecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh--------cc-
Confidence 999999999995 45678999999999999999999999999999 69999999999 7999998865 22
Q ss_pred hhhccccCCCCccccccCC--CCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCCC
Q psy5344 423 EVYARIENGSNSWRALQAP--EGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIA 500 (566)
Q Consensus 423 ~~y~~i~~~~~~w~~l~~~--~~~~~~Wd~~styI~~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~ 500 (566)
+.++..|+.+..+ ++..|+|+++||||++||+|++++ ..+|+++|||+|+||+||||||||||+
T Consensus 505 ------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~~------~~~i~~a~vLlk~gd~iTTDHIsPAG~-- 570 (745)
T TIGR01340 505 ------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPWN------GKDLSGLRVLIKVTGKCTTDHISAAGP-- 570 (745)
T ss_pred ------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCCC------cCCccCCeEEEEECCCcChhcccccch--
Confidence 2446678876554 677999999999999999998653 568999999999999999999999987
Q ss_pred CCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhhCC---CCCC--ceeecCCCccccC
Q psy5344 501 RTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVS---KPGP--KTVHFPSLEEGGQ 565 (566)
Q Consensus 501 ~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~~~---~~g~--~t~~~p~~~~~~~ 565 (566)
||..| |+|.|++ +|.|.+ .++| +|.+.|+|+.+++
T Consensus 571 -------~L~~r----------------------g~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~ 610 (745)
T TIGR01340 571 -------WLKYK----------------------GHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTI 610 (745)
T ss_pred -------hHhhc----------------------CChhhhh-cceecccccccCCceeEEEcCCCCccch
Confidence 57764 8888888 888873 4677 7888889987753
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=8.9e-107 Score=903.70 Aligned_cols=428 Identities=30% Similarity=0.423 Sum_probs=366.1
Q ss_pred HHHHhcCCCCCccCCCCCeeE-EeccCCccc---------------------ccC-CCCcchHHHHhhccc---------
Q psy5344 3 DAVKSLNGDPQKINPICPSDL-VIDHSVQVD---------------------FSR-SGVSSHGVVVTALAL--------- 50 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~l-viDHsv~~d---------------------~~~-~~~~~HQv~lE~la~--------- 50 (566)
..++++|.++... |.++ ++||+++.. |+. ..++||||++|+|++
T Consensus 44 ~~~~~~G~~~~~~----p~~~~~~DH~~~~~~~~~~~~~~~l~~~a~~~gi~~~~~g~GI~Hqv~~E~~a~PG~~ivGtD 119 (646)
T PRK07229 44 LQFEAMGLDRVKT----ELSVQYVDHNLLQADFENADDHRFLQSVAAKYGIYFSKPGNGICHQVHLERFAFPGKTLLGSD 119 (646)
T ss_pred HHHHHcCCCcCCC----CCeEEECCCCCCCCChhhHHHHHHHHHHHHHhCCeEECCCCCCcceehhhhccCCCCEEEeCC
Confidence 3467788877753 5566 999998864 221 235699999999988
Q ss_pred -c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCcc
Q psy5344 51 -H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGV 118 (566)
Q Consensus 51 -H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv 118 (566)
| ||||++|++++|+||++||++||||+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+
T Consensus 120 SHT~~~GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv 199 (646)
T PRK07229 120 SHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGV 199 (646)
T ss_pred CCcCcCCcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECccc
Confidence 7 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCCc
Q psy5344 119 KELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFD 198 (566)
Q Consensus 119 ~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~d 198 (566)
++||+++|+|||||++|+|||+||||+|++|++||+.+||.+++. .+++ +..+.| ++++|| |||.
T Consensus 200 ~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~-------~l~~--D~~a~Y---~~~i~i--DLs~- 264 (646)
T PRK07229 200 ATLSVPERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWV-------ELLA--DPDAEY---DEVIEI--DLSE- 264 (646)
T ss_pred ccccHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCcccce-------eccC--CCCCCe---eEEEEE--Eccc-
Confidence 999999999999999999999999999999999999999875432 2234 234556 779999 9982
Q ss_pred cccccccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCC
Q psy5344 199 VVGFGCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAP 277 (566)
Q Consensus 199 ~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p 277 (566)
| .|++++|.+|+++. +++ +.+. +|++||||||||||+||+++||++| +|+||+|
T Consensus 265 ---l------eP~va~P~~Pd~~~---pv~e~~~~-------~I~~a~IGSCTN~~~~Dl~~aA~iL------~G~~v~~ 319 (646)
T PRK07229 265 ---L------EPLIAGPHSPDNVV---PVSEVAGI-------KVDQVLIGSCTNSSYEDLMRAASIL------KGKKVHP 319 (646)
T ss_pred ---e------eeeeecCCCcccee---EhHHhCCC-------eEEEEEEecCCCCChHHHHHHHHHh------cCCCCCC
Confidence 2 34567888888864 443 3443 5999999999999999999999998 7999999
Q ss_pred ceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCC
Q psy5344 278 YIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPN 357 (566)
Q Consensus 278 ~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~ 357 (566)
+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++. + .+|++ +|||+||||+||||++
T Consensus 320 ~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~-------~~~~~---~vst~NRNF~GR~G~~ 388 (646)
T PRK07229 320 KVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-P-------ATGNV---SLRTFNRNFPGRSGTK 388 (646)
T ss_pred CeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-C-------CCCcE---EEEccCCCCCccCCCC
Confidence 99999999999999999999999999999999999999999998542 2 45665 5999999999999999
Q ss_pred cCceeecCHHHHHHHHHcCccccCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCcccc
Q psy5344 358 TRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRA 437 (566)
Q Consensus 358 ~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~ 437 (566)
.+.+|||||++|||||++|+|+ |+.++|++. |++|||+ ||+ .+.++..+|.+ ..+.|+.
T Consensus 389 ~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~--------~~~~~~~~~~~-------~~~~~~~ 447 (646)
T PRK07229 389 DAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPE--------GFAVDDAGIIA-------PAEDGSD 447 (646)
T ss_pred CCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCc--------cccCChhhhcC-------CCccccc
Confidence 9999999999999999999999 999999977 9999997 787 12234444432 3456877
Q ss_pred ccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCC
Q psy5344 438 LQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPP 517 (566)
Q Consensus 438 l~~~~~~~~~Wd~~styI~~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~ 517 (566)
++.+ .+|||++||+|+++ .++.++|+|+++||+||||||||||+ +||.
T Consensus 448 ~~~~---------~~p~~~~~~~~~~~--------~~~~~~~vl~~~gd~i~TD~I~Pa~~--------~~l~------- 495 (646)
T PRK07229 448 VEVV---------RGPNIKPLPLLEPL--------PDLLEGKVLLKVGDNITTDHIMPAGA--------KWLP------- 495 (646)
T ss_pred cccc---------CCCCCCCCccCCCC--------CcCceEEEEEEcCCCCChhccCcCCc--------chhc-------
Confidence 7653 57899999999764 36789999999999999999999998 3343
Q ss_pred CCcccccCcCCchhhhccccccchhhhhhC
Q psy5344 518 DFNSYGSRRGNDDVMVRGTFANIRIVNKLV 547 (566)
Q Consensus 518 dfnsyg~rrgn~evm~rgtf~n~r~~n~~~ 547 (566)
+|||||.|.|++|.+ ++|.+.
T Consensus 496 -------~r~~~~~l~~~~f~~--~~~~f~ 516 (646)
T PRK07229 496 -------YRSNIPNISEFVFEG--VDNTFP 516 (646)
T ss_pred -------cCCCHHHHHHHHhcc--CChhhh
Confidence 689999999999995 467776
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=1.2e-102 Score=869.53 Aligned_cols=406 Identities=29% Similarity=0.409 Sum_probs=338.3
Q ss_pred HHHhcCCCCCccCCCCCeeEEeccCCcc-c------------ccC---------CCCcchHHHHhhccc----------c
Q psy5344 4 AVKSLNGDPQKINPICPSDLVIDHSVQV-D------------FSR---------SGVSSHGVVVTALAL----------H 51 (566)
Q Consensus 4 ~~~~~g~dp~~inp~~p~~lviDHsv~~-d------------~~~---------~~~~~HQv~lE~la~----------H 51 (566)
.|+++|.+. +.|. .+.+++||+++. | |++ ..++||||++|+|++ |
T Consensus 42 ~~~~~g~~~--v~~~-~~~~~~DH~~~~~d~~~a~~~~~l~~~a~~~gi~~~~pg~GI~Hqv~~E~~a~PG~~ivGtDSH 118 (658)
T TIGR01342 42 EFEALEMDE--VKTE-LAAQYCDHNMLQFDFKNADDHKFLMSAAGKFGAWFSKPGNGICHNVHKENFAAPGKTLLGSDSH 118 (658)
T ss_pred HHHHcCCCc--cCCC-CeEEECCCCCCCCChhhHHHHHHHHHHHHHhCCeEECCCCCEEeeEchhhccCCCCEEEecCcC
Confidence 356666532 4443 457899999664 2 111 234599999999998 7
Q ss_pred -----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCcccc
Q psy5344 52 -----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKE 120 (566)
Q Consensus 52 -----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~ 120 (566)
||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+|||+++
T Consensus 119 T~t~GalG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~ 198 (658)
T TIGR01342 119 TPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEE 198 (658)
T ss_pred cCCCCcccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCCccc
Q psy5344 121 LSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVV 200 (566)
Q Consensus 121 LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~d~v 200 (566)
||+++|||||||++|+|||+||||+|++|++||+.++|.+++. .+++ +..+.| ++++|| |||+
T Consensus 199 Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~-------~l~~--D~~a~Y---~~~i~i--Dls~--- 261 (658)
T TIGR01342 199 LSVPERATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFV-------DLLA--DADAEY---ADEIEI--DLSD--- 261 (658)
T ss_pred cCHHHHhhhhccchhhCceEEEEcCcHHHHHHHHhcCCchhee-------eccC--CCCCcE---EEEEEE--Eccc---
Confidence 9999999999999999999999999999999999999865432 2344 234556 779999 9983
Q ss_pred cccccccccCCCCCCCCCCCCCcccceeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCcee
Q psy5344 201 GFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIK 280 (566)
Q Consensus 201 ~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk 280 (566)
| .|++++|++|+++..+.. +.| .+|+++|||||||||++|+++||++| +|+||+|+||
T Consensus 262 -l------eP~va~P~~Pd~v~~v~e--~~g-------~~id~v~IGSCTn~~~~Dl~~aA~il------~G~~v~~~v~ 319 (658)
T TIGR01342 262 -L------EPLIAEPHMPDNVVPVRE--IAG-------IEVDQVMIGSCTNGAFEDLLPAAKLL------EGREVHKDTE 319 (658)
T ss_pred -e------eeeeeCCCCCCCeeEhHH--hCC-------ceeeeEEEeCCCCCChHHHHHHHHHh------CCCccCCCcc
Confidence 2 455788889988653332 344 36899999999999999999999998 8999999999
Q ss_pred eeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCc
Q psy5344 281 TSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRA 360 (566)
Q Consensus 281 ~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~ 360 (566)
++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+ .++++ +|||+||||+||||+..+.
T Consensus 320 ~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~--------~~~~~---~vst~NRNF~gR~G~~~~~ 388 (658)
T TIGR01342 320 FAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAP--------ASDGV---SLRSFNRNFEGRAGIEDAK 388 (658)
T ss_pred EEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCC--------CCCcE---EEEccCCCCCccCCCCCCe
Confidence 999999999999999999999999999999999999999996542 45564 5999999999999999899
Q ss_pred eeecCHHHHHHHHHcCccccCCCCCCccCCCCCCceecccC-CCChhhhhHhhhhccCchhhHhhhccccCCCCcccccc
Q psy5344 361 NYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDI-WPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQ 439 (566)
Q Consensus 361 ~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~di-wP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~ 439 (566)
+|||||++|||||++|+| +|+.+ ++. .+| |+ ||+.+ .|+.|...|..++ |+.++
T Consensus 389 ~yLaSP~~vaAsA~~G~i-~dp~~--l~~-~~g------~~~~p~~~----------~p~~~~~~~~~~~-----~~~~~ 443 (658)
T TIGR01342 389 VYLASPETATAAAIAGEI-IDPRD--LAD-DEG------DLEAIGFE----------MGEKFPGGYDAAD-----IDIIP 443 (658)
T ss_pred EEECCHHHHHHHHHcCCc-CCHHH--hcc-ccC------cccCCCCC----------Cchhhcccccccc-----cccCC
Confidence 999999999999999999 55553 432 244 34 88644 2555655555543 77665
Q ss_pred C---CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCC
Q psy5344 440 A---PEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSI 499 (566)
Q Consensus 440 ~---~~~~~~~Wd~~styI~~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i 499 (566)
. ++.+++. ||||++||+|++++. +|++ |+++++||+||||||+|||.+
T Consensus 444 ~~~~~~~~~~~----~p~i~~~p~~~~~~~-------~i~g-rv~~~~gDnI~TD~I~Pa~~~ 494 (658)
T TIGR01342 444 KEEREDDDIIK----GPNIKPLPEFDPLGA-------DIEG-ETALIMEDNITTDHIIPAGAD 494 (658)
T ss_pred CCCCCCcceee----CCCCCCCCCCCCCcc-------ccCc-eEEEEcCCCCChhcCCCCCcc
Confidence 4 4455654 999999999998753 4565 999999999999999999996
No 12
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=2.9e-99 Score=795.50 Aligned_cols=314 Identities=68% Similarity=0.997 Sum_probs=293.1
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCC--------------------------------------cchH
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGV--------------------------------------SSHG 42 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~--------------------------------------~~HQ 42 (566)
|||+++++|+||++|||.+|+||++||++|+++.+..+ +|||
T Consensus 19 ~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~~~~~~~~~~~pg~GI~Hq 98 (404)
T cd01586 19 MRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQKAFKNLRVVPPGTGIIHQ 98 (404)
T ss_pred HHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCCCCCCEeee
Confidence 89999999999999999999999999999997554432 3999
Q ss_pred HHHhhccc-----------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCC
Q psy5344 43 VVVTALAL-----------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYV 88 (566)
Q Consensus 43 v~lE~la~-----------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gV 88 (566)
|++|+||+ | ||||++|++++|+||++||++||+|+|+|+|+|++||
T Consensus 99 v~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~~vP~~i~V~l~G~l~~gV 178 (404)
T cd01586 99 VNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGV 178 (404)
T ss_pred ehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCccccCCCcEEEEEEEeecCCCc
Confidence 99996633 6 9999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhh
Q psy5344 89 TSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRW 168 (566)
Q Consensus 89 takDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~ 168 (566)
|+|||||+|++.|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 179 taKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---------------------- 236 (404)
T cd01586 179 TATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---------------------- 236 (404)
T ss_pred CHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccceeecCccceeccceEEEEEeec
Q psy5344 169 RSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITS 248 (566)
Q Consensus 169 ~~y~~ad~~~~~~y~~~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgS 248 (566)
++++|| |||+ +.|++++|++|+++. ++ +++|++|||||
T Consensus 237 -----------------d~~i~i--Dls~----------leP~Va~P~~Pd~v~---~v----------~~~Id~v~IGS 274 (404)
T cd01586 237 -----------------TQVVEL--DLST----------VEPSVSGPKRPQDRV---PL----------HGSVVIAAITS 274 (404)
T ss_pred -----------------ceEEEE--Eccc----------ceeeecCCCCccccc---Cc----------CCcEeEEEEEc
Confidence 117889 9982 245678899998864 32 34799999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCcc
Q psy5344 249 CTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPP 328 (566)
Q Consensus 249 CTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~ 328 (566)
|||||+||++.||++|+|||++||+||+||||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++++.
T Consensus 275 CTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~ 354 (404)
T cd01586 275 CTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEE 354 (404)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCcc
Q psy5344 329 IVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTV 378 (566)
Q Consensus 329 v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 378 (566)
+++.+.+||+++++|||+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 355 ~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 355 VEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred hhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHhcccC
Confidence 88889999998778999999999999999999999999999999999986
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=4.5e-94 Score=804.31 Aligned_cols=433 Identities=21% Similarity=0.242 Sum_probs=348.1
Q ss_pred HHHhcCCCCCccCCCCCeeEEeccCCccc---ccCC---------------------CCcchHHHHhhccc---------
Q psy5344 4 AVKSLNGDPQKINPICPSDLVIDHSVQVD---FSRS---------------------GVSSHGVVVTALAL--------- 50 (566)
Q Consensus 4 ~~~~~g~dp~~inp~~p~~lviDHsv~~d---~~~~---------------------~~~~HQv~lE~la~--------- 50 (566)
.++++|.+ ++ | +|+.+++||+++.. +... .++||||++|+|++
T Consensus 74 ~f~~~G~~--~v-p-~~~v~~~DH~~~~~~g~~~n~~~~~~~~~~a~k~Gi~f~~pg~GI~Hqv~~E~~a~PG~~ivGtD 149 (751)
T PRK11413 74 TAKASGME--RF-P-LPYVLTNCHNSLCAVGGTINEDDHVFGLSAAQKYGGIFVPPHIAVIHQYMREMMAGGGKMILGSD 149 (751)
T ss_pred HHHHcCCC--cC-C-CCEEEECCCCCcCCCCCCccHHHHHHHHHHHHHcCCcEECCCCCeECcCchhhccCCCcEEEeeC
Confidence 45677873 45 4 69999999987753 2211 23499999999998
Q ss_pred -c----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCc-cceEEEEccCcc
Q psy5344 51 -H----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGV-VGKFVEFFGPGV 118 (566)
Q Consensus 51 -H----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~-~gk~vEf~G~gv 118 (566)
| |||||+|++.+|+|++||+++||+|+|+|+|+|++||+||||||+|+++|+++|+ +||+|||+|||+
T Consensus 150 SHT~~GalG~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv 229 (751)
T PRK11413 150 SHTRYGALGTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGV 229 (751)
T ss_pred cCcccchhhhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCcc
Confidence 7 9999999999999999999999999999999999999999999999999999999 699999999999
Q ss_pred cccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCCc
Q psy5344 119 KELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFD 198 (566)
Q Consensus 119 ~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~d 198 (566)
++||+++|||||||++|+|||+||||+|++|++||+.++|.+++ +. +++ +..+.| +++++| |||+
T Consensus 230 ~~LS~~~R~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~------~~-l~~--D~~A~Y---d~~iei--DLs~- 294 (751)
T PRK11413 230 SALSTDFRNGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDY------CE-LNP--QPMAYY---DGCISV--DLSA- 294 (751)
T ss_pred ccCCHhHHhhhhhcccccCceEEEecCcHHHHHHHHhCCChhhc------ee-ccC--CCCCCe---eEEEEE--Eccc-
Confidence 99999999999999999999999999999999999999987542 22 234 234556 779999 9983
Q ss_pred cccccccccccCCCCCCCCCCCCCccccee--e------------------cCc--cceec--cceEEEEEeecCCCCCC
Q psy5344 199 VVGFGCMTCIGNSGPLDPPIDKLGATGQFE--F------------------EGK--TYTLK--HGSVVIAAITSCTNTSN 254 (566)
Q Consensus 199 ~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~--~------------------~g~--~~~l~--~g~V~~a~IgSCTN~s~ 254 (566)
| .|++++|++|+++..+..+. . .+. ..++. ..+|+|||||||||||+
T Consensus 295 ---l------eP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~Idq~~IGSCTNg~~ 365 (751)
T PRK11413 295 ---I------KPMIALPFHPSNVYEIDELNQNLTDILREVEIESERVAHGKAKLSLLDKIENGRLKVQQGIIAGCSGGNY 365 (751)
T ss_pred ---c------eeeecCCCChhhCcChhhcccchhhhcchhhhhhhhhhhhhccccccccccCCCcEeeeEEEecCCCCCH
Confidence 2 45578899999876554431 0 000 01222 34799999999999999
Q ss_pred hHHHHHHHHHHHHHHHcCCccC-CceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccc
Q psy5344 255 PSVMLGAGLLAKKAVEAGLSVA-PYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAI 333 (566)
Q Consensus 255 ~dl~~aA~llak~Av~~G~kv~-p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i 333 (566)
+|++.||++| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++. .
T Consensus 366 eDl~~AA~IL------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~--------~ 431 (751)
T PRK11413 366 ENVIAAANAL------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDT--------P 431 (751)
T ss_pred HHHHHHHHHh------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCc--------C
Confidence 9999999998 899998 679999999999999999999999999999999999999999998644 2
Q ss_pred cCCceEEEeeecccCCCcCCcCCCcCc-----eeecCHHHHHHHHHc-CccccCCCCCCccCCCCCCceecccCCCChhh
Q psy5344 334 EKNELVVAGVLSGNRNFEGRIHPNTRA-----NYLASPLLVIAYALA-GTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSE 407 (566)
Q Consensus 334 ~~g~~~~~~VsS~NRNF~GR~g~~~~~-----~yLaSP~lVaA~Ala-G~I~~d~~~dplg~~~~G~~v~l~diwP~~~E 407 (566)
.+|++ +|+|+||||+||||++.++ +||+||+++||+|+. |+|+ +|...+. ++ |
T Consensus 432 ~~ge~---~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~ 490 (751)
T PRK11413 432 ANNGL---SIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---N 490 (751)
T ss_pred CCCCE---EEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---c
Confidence 56775 5899999999999998876 677779999999998 6998 4543321 11 1
Q ss_pred hhHhhhhccCchhhH-hhhccccCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCceEEEEeCC
Q psy5344 408 IHAVEKQHVIPAMFR-EVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGD 486 (566)
Q Consensus 408 i~~~~~~~~~~~~f~-~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp~f~~~~~~~~~~~~~i~~arvL~~~gD 486 (566)
.+ .+.++..+|. ..|....+..+..+.+ .+++|++||-++.+... ..++|++|+||
T Consensus 491 ~p---~~~~~~~~y~~~~~~~~~~~~~~~~~~------------~gPni~~~p~~~~l~~~--------~~~kv~~k~~D 547 (751)
T PRK11413 491 VP---EYAFDVTPYKNRVYQGFGKGATQQPLI------------YGPNIKDWPEMGALTDN--------ILLKVCSKILD 547 (751)
T ss_pred CC---CcccCccccccccccCCCCCCCcceEE------------eCcCCCCCCCCCCCCCc--------EEEEEEEEeCC
Confidence 22 2456666664 4554433333322222 36789999999876543 56899999999
Q ss_pred Ccc-ccccccCCCCC--CCCHHHHHHHhCCCCCCCCcccccC
Q psy5344 487 SVT-TDHISPAGSIA--RTSAAAKFLASKGLSPPDFNSYGSR 525 (566)
Q Consensus 487 ~iT-TDHISPAG~i~--~~s~ag~yL~~~g~~~~dfnsyg~r 525 (566)
+|| ||||||||+|+ |+++-. |.++-+..+| |.|-.|
T Consensus 548 ~itTTD~i~paG~~l~~Rsn~~~--is~~~~~~~d-~~~~~r 586 (751)
T PRK11413 548 PVTTTDELIPSGETSSYRSNPLG--LAEFTLSRRD-PGYVGR 586 (751)
T ss_pred CCccccccccCCCccccccCHHH--HhhhhccccC-hhhHHH
Confidence 996 99999999997 888877 7777777766 566555
No 14
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=1.2e-93 Score=754.66 Aligned_cols=318 Identities=28% Similarity=0.391 Sum_probs=282.7
Q ss_pred HHHhcCC----CCCccCCCCCeeEEeccCCccc---------------------ccC--CCCcchHHHHhh-ccc-----
Q psy5344 4 AVKSLNG----DPQKINPICPSDLVIDHSVQVD---------------------FSR--SGVSSHGVVVTA-LAL----- 50 (566)
Q Consensus 4 ~~~~~g~----dp~~inp~~p~~lviDHsv~~d---------------------~~~--~~~~~HQv~lE~-la~----- 50 (566)
+|+++|. ||+|+ .+++||++|++ |+. ..++||||++|+ +++
T Consensus 15 ~~~~~g~~~v~dp~k~------~~~~DH~vp~~~~~~~~~~~~~r~~a~~~gi~~~~~~g~GI~H~v~~E~g~~~PG~~i 88 (382)
T cd01583 15 GLREAGREKVWDPEKI------VAVFDHNVPTPDIKAAEQVKTLRKFAKEFGINFFDVGRQGICHVILPEKGLTLPGMTI 88 (382)
T ss_pred HHHHhCCcccCCCCce------EEEcCCCCCCCCHHHHHHHHHHHHHHHHhCcccccCCCCCEeeEEeccccEecCCcEE
Confidence 4555554 56666 99999999973 333 468899999999 777
Q ss_pred -----c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEc
Q psy5344 51 -----H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFF 114 (566)
Q Consensus 51 -----H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~ 114 (566)
| ||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+
T Consensus 89 vg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~ 168 (382)
T cd01583 89 VGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFA 168 (382)
T ss_pred EecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEE
Confidence 6 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeecccc
Q psy5344 115 GPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQ 194 (566)
Q Consensus 115 G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~D 194 (566)
|+|+++||+++|||||||++|+|||+||||+|++|++||+.++|++ |+. +++ +..+.| +++++| |
T Consensus 169 G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~-------~~~-~~~--D~~a~Y---~~~~~i--D 233 (382)
T cd01583 169 GEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAY-------WKE-LKS--DEDAEY---DKVVEI--D 233 (382)
T ss_pred cCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccc-------hhh-cCC--CCCCCE---EEEEEE--E
Confidence 9999999999999999999999999999999999999999998863 322 334 234456 779999 9
Q ss_pred CCCccccccccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCC
Q psy5344 195 LGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGL 273 (566)
Q Consensus 195 Ls~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~ 273 (566)
||+ +.|++++|++|+|+. +++ +.+ .+|||||||||||||+||++.||++| ||+
T Consensus 234 ls~----------leP~va~P~~P~nv~---~v~e~~~-------~~Id~v~IGSCTNgr~eDl~~AA~iL------kG~ 287 (382)
T cd01583 234 ASE----------LEPQVAWPHSPDNVV---PVSEVEG-------IKIDQVFIGSCTNGRLEDLRAAAEIL------KGR 287 (382)
T ss_pred ccc----------ceeeEecCCCccceE---ECcccCC-------cceeEEEEeccCCCChHHHHHHHHHh------cCC
Confidence 982 245578888998864 443 344 35999999999999999999999998 999
Q ss_pred ccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCC
Q psy5344 274 SVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGR 353 (566)
Q Consensus 274 kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR 353 (566)
||+|+||++|+|||++|++||+++|++++|+++||.|.+||||+|+|+++++ +.+||+ +|||+||||+||
T Consensus 288 kv~~~Vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~-------~~~ge~---~vsT~NRNF~GR 357 (382)
T cd01583 288 KVADGVRLIVVPASQRVYKQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGV-------LAPGER---CVSTSNRNFKGR 357 (382)
T ss_pred CCCCCccEEEECCCHHHHHHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCc-------CCCCCE---EEEecCCCCCcC
Confidence 9999999999999999999999999999999999999999999999998763 578886 489999999999
Q ss_pred cCCCcCceeecCHHHHHHHHHcCcc
Q psy5344 354 IHPNTRANYLASPLLVIAYALAGTV 378 (566)
Q Consensus 354 ~g~~~~~~yLaSP~lVaA~AlaG~I 378 (566)
||++.+.+|||||++||||||+|+|
T Consensus 358 mG~~~~~~yLaSP~~vAAsAi~G~i 382 (382)
T cd01583 358 MGSPGARIYLASPATAAASAITGEI 382 (382)
T ss_pred CCCCCCcEEECCHHHHHHHHhcccC
Confidence 9999999999999999999999986
No 15
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=2.8e-92 Score=748.98 Aligned_cols=336 Identities=30% Similarity=0.394 Sum_probs=281.3
Q ss_pred HHHhcCCCCCccCCCCCeeEEeccCCcccccCCC--------------------------------CcchHHHHhhccc-
Q psy5344 4 AVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSG--------------------------------VSSHGVVVTALAL- 50 (566)
Q Consensus 4 ~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~--------------------------------~~~HQv~lE~la~- 50 (566)
.|+++|.+ + |.+|.++++||++|+++++.. ++||||++|+|++
T Consensus 15 ~f~~~g~~-~---v~~p~~~~~DH~~~~~~~~~~~~~~a~~~n~~~~~~~r~~a~~~gi~~~~~g~GI~Hqv~~E~~~~P 90 (412)
T cd01584 15 QFMSSGLP-K---VAVPSTIHCDHLIEAQVGGEKDLKRAKDINKEVYDFLASAGAKYGIGFWKPGSGIIHQIVLENYAFP 90 (412)
T ss_pred HHHHhCCC-C---CCCCCeEEeCCCccccccCCCchhhhhhhhHHHHHHHHHHHHHcCCeEECCCCCeeceEchhhccCC
Confidence 45667664 3 455669999999998644332 3399999999888
Q ss_pred ---------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceE
Q psy5344 51 ---------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKF 110 (566)
Q Consensus 51 ---------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~ 110 (566)
| ||||++|++++|+|++|||++||+|+|+|+|+|++||+||||||+|+++|+++|++||+
T Consensus 91 G~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~ 170 (412)
T cd01584 91 GLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAI 170 (412)
T ss_pred CCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEE
Confidence 6 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhh----hhhhcCCCCCCCCc
Q psy5344 111 VEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQ----NARLVGFKGYGLKS 186 (566)
Q Consensus 111 vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~----~ad~~~~~~y~~~~ 186 (566)
|||+|+|+++||+++|||||||++|+|||+||||+|++|++||+.++|+++ .++.+ +|. ++ +..+.| +
T Consensus 171 vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~-~~~~~--~y~~~~l~~--D~da~Y---~ 242 (412)
T cd01584 171 VEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEI-ADLAD--EFKDDLLVA--DEGAEY---D 242 (412)
T ss_pred EEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHH-HHHHH--HHHhcccCC--CCCCCe---E
Confidence 999999999999999999999999999999999999999999999998864 23333 332 22 122334 7
Q ss_pred ceeeccccCCCccccccccccccCCCCCCCCCCCCCcccceeecCc----cceeccceEEEEEeecCCCCCChHHHHHHH
Q psy5344 187 QVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGK----TYTLKHGSVVIAAITSCTNTSNPSVMLGAG 262 (566)
Q Consensus 187 ~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~----~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~ 262 (566)
++++| |||+ +.|++++|.+|+|+..+..+ .+. ..+ .+|+|||||||||||+||+..| +
T Consensus 243 ~~i~i--Dls~----------leP~va~P~~P~nv~~v~e~--~~~~~~~g~~---~~Id~a~IGSCTNgr~~Dl~~A-A 304 (412)
T cd01584 243 QLIEI--NLSE----------LEPHINGPFTPDLATPVSKF--KEVAEKNGWP---LDLRVGLIGSCTNSSYEDMGRA-A 304 (412)
T ss_pred EEEEE--Eccc----------ceEeecCCCChhcCcChhHc--ChhhhccCCc---eeEEEEEEeccCCCChHHHHHH-H
Confidence 79999 9982 24557888899987544433 221 011 2699999999999999995555 5
Q ss_pred HHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEe
Q psy5344 263 LLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAG 342 (566)
Q Consensus 263 llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~ 342 (566)
.++|+|+.||+|++ ||++|+|||++|++||+++||+++|.++||.|.+||||+|+|++++ +.+.+|+.. ++
T Consensus 305 ~ilk~a~~~g~~v~--vr~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~------~~~~~g~~~-~~ 375 (412)
T cd01584 305 SIAKQALAHGLKCK--SIFTITPGSEQIRATIERDGLLQTFRDAGGIVLANACGPCIGQWDR------KDIKKGEKN-TI 375 (412)
T ss_pred HHHhhHHhCCCCCC--CcEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCcccccccCCCC------cccCCCCce-EE
Confidence 77799999999998 8999999999999999999999999999999999999999999864 113445542 25
Q ss_pred eecccCCCcCCc-CCCcCceeecCHHHHHHHHHcCcc
Q psy5344 343 VLSGNRNFEGRI-HPNTRANYLASPLLVIAYALAGTV 378 (566)
Q Consensus 343 VsS~NRNF~GR~-g~~~~~~yLaSP~lVaA~AlaG~I 378 (566)
|||+||||+||| |+....+|||||++||||||+|++
T Consensus 376 vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi~G~~ 412 (412)
T cd01584 376 VTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAGTL 412 (412)
T ss_pred EEecCCCCCCCCCCCCCceEEeCCHHHHHHHHhcccC
Confidence 999999999999 455677999999999999999985
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=2.1e-91 Score=753.18 Aligned_cols=337 Identities=24% Similarity=0.312 Sum_probs=283.9
Q ss_pred HHHhcCCCCCccCCCCCeeEEeccCCcccc----------------------------cCC----CCcchHHHHhh-ccc
Q psy5344 4 AVKSLNGDPQKINPICPSDLVIDHSVQVDF----------------------------SRS----GVSSHGVVVTA-LAL 50 (566)
Q Consensus 4 ~~~~~g~dp~~inp~~p~~lviDHsv~~d~----------------------------~~~----~~~~HQv~lE~-la~ 50 (566)
+|+++|. ++.+--++.+++||++|++. +.- .++||||++|+ ++.
T Consensus 43 ~~~~~g~---~v~~p~~~~~~~DH~vp~~~~~~~~~~~~~~~~~~~~r~~a~~~gi~~~~v~~p~~GI~Hqv~~E~g~~~ 119 (465)
T TIGR00170 43 GLRQAGR---KVRRPQKTFATMDHNIPTQNRDFNIKDEVAKIQVTELEKNCKEFGVRLFDLHSVDQGIVHVMGPEQGLTL 119 (465)
T ss_pred HHHHcCC---CcCCCcCEEEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHhCCeeeccCCCCCCEeCeEccccCccc
Confidence 4666763 34444488999999999742 110 25699999997 777
Q ss_pred ----------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccce
Q psy5344 51 ----------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGK 109 (566)
Q Consensus 51 ----------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk 109 (566)
| ||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++||.+|++||
T Consensus 120 PG~~ivgtDSHT~t~GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~ 199 (465)
T TIGR00170 120 PGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGH 199 (465)
T ss_pred CCceEEecCCCccccccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceE
Confidence 6 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCC---CCC--
Q psy5344 110 FVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKG---YGL-- 184 (566)
Q Consensus 110 ~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~---y~~-- 184 (566)
+|||+|+||++||+++|||||||++|+|||+||||+|++|++||+.+++.+.. + .|.++ +.+|+. +++
T Consensus 200 ~vEF~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~~----~--~~~~~-~~~~~~l~~d~~a~ 272 (465)
T TIGR00170 200 VIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPKG----K--EFDKA-VAYWKTLKTDEGAV 272 (465)
T ss_pred EEEEEccccccccHHHhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccch----h--HHHHH-HHhhhhccCCCCCc
Confidence 99999999999999999999999999999999999999999999988775432 1 23333 333322 111
Q ss_pred CcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccce--------------------eecCc--cceeccceEE
Q psy5344 185 KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQF--------------------EFEGK--TYTLKHGSVV 242 (566)
Q Consensus 185 ~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v--------------------~~~g~--~~~l~~g~V~ 242 (566)
++++++| |||. +.|++++|.+|+|+..+..+ ++.+. ..++.+++|+
T Consensus 273 Y~~~i~i--Dls~----------leP~Va~P~~P~n~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id 340 (465)
T TIGR00170 273 FDTVITL--EAND----------ISPQVTWGTNPGQVLPVNSEVPDPESFADPVDKASAERALAYMGLEPGTPLKDIKVD 340 (465)
T ss_pred eeEEEEE--Eccc----------ceeeecCCCChhhccCccccCCChhhhcchhhhhhhhhhhhhccccCCcccCCCeEE
Confidence 2669999 9982 23457888889887554431 01111 1247788999
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCC
Q psy5344 243 IAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNS 322 (566)
Q Consensus 243 ~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~ 322 (566)
+||||||||||++||+.||++| ||+||+||||++|+|||++|++||+++||+++|+++||+|.+||||+|+|++
T Consensus 341 ~~~IGSCTNgr~~dl~aaA~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~ 414 (465)
T TIGR00170 341 KVFIGSCTNSRIEDLRAAAAVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMN 414 (465)
T ss_pred EEEEecCCCCCHHHHHHHHHHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcC
Confidence 9999999999999999888666 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 323 GPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 323 g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+++ +.+|++ ++||+||||+||||+ ...+|||||++||||||+|+|+
T Consensus 415 ~~~-------~~~ge~---~isTsNRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 415 NDR-------LPEGER---CASTSNRNFEGRQGR-GGRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred CCC-------CCCCCE---EEEecCCCCCCCCCC-CCCEEEcCHHHHHHHHhCceec
Confidence 875 366775 379999999999998 5578999999999999999997
No 17
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=3.1e-91 Score=734.63 Aligned_cols=322 Identities=30% Similarity=0.427 Sum_probs=282.7
Q ss_pred HHHHhcCCCCCccCCCCCeeEEeccCCccc-------------ccC---------CCCcchHHHHhhccc----------
Q psy5344 3 DAVKSLNGDPQKINPICPSDLVIDHSVQVD-------------FSR---------SGVSSHGVVVTALAL---------- 50 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~lviDHsv~~d-------------~~~---------~~~~~HQv~lE~la~---------- 50 (566)
+.|+++|.+.. .+| .+.+++||.+|.. |++ .+++|||+++|+|++
T Consensus 15 ~~~~~~g~~~v-~~~--~~~~~~DH~~p~~~~~~a~~~~~lr~~a~~~gi~~~~~g~GI~H~v~~E~~~~PG~~ivg~DS 91 (380)
T cd01585 15 LQFEAMGVDRV-RTE--LSVSYVDHNTLQTDFENADDHRFLQTVAARYGIYFSRPGNGICHQVHLERFAVPGKTLLGSDS 91 (380)
T ss_pred HHHHHcCCCee-CCC--CeEEEeCCCCCCCChHHHHHHHHHHHHHHHcCCEEECCCCCeeeeecHhhccCCCCEEEecCc
Confidence 45677887432 445 3789999999963 222 245699999999888
Q ss_pred c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCccc
Q psy5344 51 H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVK 119 (566)
Q Consensus 51 H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~ 119 (566)
| ||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||++
T Consensus 92 HT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~ 171 (380)
T cd01585 92 HTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVA 171 (380)
T ss_pred CcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCccc
Confidence 6 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCCcc
Q psy5344 120 ELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDV 199 (566)
Q Consensus 120 ~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~d~ 199 (566)
+||+++|||||||++|+|||+||||+|++|++||+.+||.+++ +. +.+ +..+.| +++++| |||+
T Consensus 172 ~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~------~~-l~~--D~~a~Y---~~~i~i--Dls~-- 235 (380)
T cd01585 172 TLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDW------VE-LAA--DADAEY---DEEIEI--DLSE-- 235 (380)
T ss_pred ccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhc------cc-cCC--CCCCce---EEEEEE--Eccc--
Confidence 9999999999999999999999999999999999999986432 12 233 234456 779999 9982
Q ss_pred ccccccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCc
Q psy5344 200 VGFGCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPY 278 (566)
Q Consensus 200 v~l~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~ 278 (566)
+.|++++|.+|+++. +++ +.+. +|++||||||||+|+||+++||++| ||+||+|+
T Consensus 236 --------leP~va~P~~pd~v~---pv~~~~g~-------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~ 291 (380)
T cd01585 236 --------LEPLIARPHSPDNVV---PVREVAGI-------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPH 291 (380)
T ss_pred --------ceeeecCCCCCCcee---EhhhhCCc-------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCC
Confidence 245678888998865 443 3443 6999999999999999999999998 89999999
Q ss_pred eeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCc
Q psy5344 279 IKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNT 358 (566)
Q Consensus 279 Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~ 358 (566)
||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|+++.+ .+|++ +|||+||||+||||++.
T Consensus 292 V~~~v~P~S~~V~~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~--------~~ge~---~vsT~NRNF~GRmG~~~ 360 (380)
T cd01585 292 VSMVVAPGSKQVLEMLARNGALADLLAAGARILESACGPCIGMGQAP--------PTGGV---SVRTFNRNFEGRSGTKD 360 (380)
T ss_pred ceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCC--------CCCcE---EEEccCCCCCccCCCCC
Confidence 99999999999999999999999999999999999999999997652 56776 48999999999999988
Q ss_pred CceeecCHHHHHHHHHcCcc
Q psy5344 359 RANYLASPLLVIAYALAGTV 378 (566)
Q Consensus 359 ~~~yLaSP~lVaA~AlaG~I 378 (566)
+.+|||||++||||||+|+|
T Consensus 361 ~~~yLaSP~~vaAsAi~G~i 380 (380)
T cd01585 361 DLVYLASPEVAAAAALTGVI 380 (380)
T ss_pred CcEEeCCHHHHHHHHhCccC
Confidence 89999999999999999986
No 18
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=5e-91 Score=776.38 Aligned_cols=446 Identities=21% Similarity=0.312 Sum_probs=330.2
Q ss_pred HHhcCCCCCccCCCCCeeEEeccCCccc---------------------cc-CCCCcchHHHHhh-ccc----------c
Q psy5344 5 VKSLNGDPQKINPICPSDLVIDHSVQVD---------------------FS-RSGVSSHGVVVTA-LAL----------H 51 (566)
Q Consensus 5 ~~~~g~dp~~inp~~p~~lviDHsv~~d---------------------~~-~~~~~~HQv~lE~-la~----------H 51 (566)
+.++|.+ +..+|. .+.+++||.+|.. |+ ...++||||++|+ |++ |
T Consensus 48 ~~~~g~~-~V~~p~-~~v~~~DH~v~~~~~~~~~~~~~l~~fAkk~Gi~f~~~g~GI~Hqv~~E~g~a~PG~~ivGsDSH 125 (712)
T TIGR00139 48 FMGIGAS-KIHNPD-QIVMTLDHDIQNKSDKNLKKYKNIEEFAKKHGIDFYPAGRGIGHQIMIEEGFAFPGNLAVASDSH 125 (712)
T ss_pred HHHcCCC-ccCCCC-CEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCCeEECCCCCeEeEeecccCcccCCeEEEccCcC
Confidence 3567763 334554 4589999999862 22 2245699999996 888 7
Q ss_pred -----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEcc--Ccc
Q psy5344 52 -----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG--PGV 118 (566)
Q Consensus 52 -----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G--~gv 118 (566)
||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+++|++||+|||+| +|+
T Consensus 126 T~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv 205 (712)
T TIGR00139 126 SNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSL 205 (712)
T ss_pred cCccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcc------------hhh----hh-hh-hhhhhhhhcCCC
Q psy5344 119 KELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPG------------CTK----VS-RW-RSGQNARLVGFK 180 (566)
Q Consensus 119 ~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~------------~~~----~~-~~-~~y~~ad~~~~~ 180 (566)
++||+++|+|||||++|+|||+|+||+|++|++||+.++|... ... .+ +| ..++++ +..+
T Consensus 206 ~~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~a--D~~A 283 (712)
T TIGR00139 206 NALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEIPLKA--DKDA 283 (712)
T ss_pred hcCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhccCCC--CCCC
Confidence 9999999999999999999999999999999999999976311 000 01 11 012233 2233
Q ss_pred CCCCCcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccceeecCccceeccceEEEEEeecCCCCCChHHHHH
Q psy5344 181 GYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLG 260 (566)
Q Consensus 181 ~y~~~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~a 260 (566)
.| +++++| |||+ | .|.++.|.+|+++..+..+...+ .+|++||||||||+|++|++.|
T Consensus 284 ~Y---~~~~~i--DLs~----l------eP~vA~P~~p~~~~~v~el~~~~-------~~Id~~~IGSCTN~r~~Dl~~A 341 (712)
T TIGR00139 284 HY---AKELFI--DLAS----L------SHYVSGPNSVKVANPLKDLEAQD-------IKIDKAYLVSCTNSRASDIAAA 341 (712)
T ss_pred CE---EEEEEE--Eccc----c------eeeeeCCCCCCCcCcHHHhhhcC-------ceeeeEEEecCCCCCcHHHHHH
Confidence 44 779999 9983 3 33456677787765333321122 3699999999999999999999
Q ss_pred HHHHHHHHHHcC---CccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCc
Q psy5344 261 AGLLAKKAVEAG---LSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNE 337 (566)
Q Consensus 261 A~llak~Av~~G---~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~ 337 (566)
|.+|+++|..+| +||+|+||++|+|||++|+++|+++|++++|++|||.|.++|||+|||+++++ +++|+
T Consensus 342 A~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~~-------~~~ge 414 (712)
T TIGR00139 342 ADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAGL-------LEPGE 414 (712)
T ss_pred HHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCC-------CCCCC
Confidence 999988887763 79999999999999999999999999999999999999999999999998764 36777
Q ss_pred eEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccccCCCCCCccCCCCCCceecccCCCCh-----hhhhHhh
Q psy5344 338 LVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSR-----SEIHAVE 412 (566)
Q Consensus 338 ~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~-----~Ei~~~~ 412 (566)
+ +|||+||||+||||++.+.+|||||++||||||+|+|+ ||..+.. + +-||.. +.+....
T Consensus 415 v---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~---~----~~~~~~~~~~~~~~~~~~ 479 (712)
T TIGR00139 415 V---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLS---P----EGWTEIIFGEGDGIKEED 479 (712)
T ss_pred E---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhc---c----cccccccccccccccCcc
Confidence 6 58999999999999999999999999999999999997 5543311 0 012310 0111111
Q ss_pred hhccCchhhHhhhccccC-C--CCccccccCCCCCccccCCCCCCCC-CCCCCCCCCCCCCCCCCcccCceEEEEeCCCc
Q psy5344 413 KQHVIPAMFREVYARIEN-G--SNSWRALQAPEGQLYPWDLSSTYIK-RPPFFDGMGRDVTPGDRVIEQARVLLLLGDSV 488 (566)
Q Consensus 413 ~~~~~~~~f~~~y~~i~~-~--~~~w~~l~~~~~~~~~Wd~~styI~-~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~i 488 (566)
...++.+++...-..+.. . .+.-.....|+.. .-++ ..|.+++++ +....+++.+.||+|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--------~~i~g~v~~~~gdnI 543 (712)
T TIGR00139 480 RMLTNEEALEKIIGIIDDLVADEEKNAASEAPAQE--------ESEQGLTEILEGFP--------EEFSGELVFCDADNI 543 (712)
T ss_pred cccCcHHHHhhhhhhccCccccchhcccccccccc--------hhccCCCCcCCCCC--------ceEEEEEEEcCCCCC
Confidence 222344444221111100 0 0000011111110 0011 234444433 345789999999999
Q ss_pred cccccccCCCCCCC--C--HHHHHHHhCCCC
Q psy5344 489 TTDHISPAGSIART--S--AAAKFLASKGLS 515 (566)
Q Consensus 489 TTDHISPAG~i~~~--s--~ag~yL~~~g~~ 515 (566)
+||||.|+.-..++ . -.++|+.+ ++.
T Consensus 544 ~TD~I~P~~~~~~~~~~~~~l~~~~~~-~~d 573 (712)
T TIGR00139 544 NTDGIYPGKYTYQDDVPKEKMAQVCME-NYD 573 (712)
T ss_pred chhhccchhhcccCCCCHHHHHHhhcc-CCC
Confidence 99999999866443 2 57777777 344
No 19
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=4.2e-91 Score=751.83 Aligned_cols=337 Identities=26% Similarity=0.340 Sum_probs=288.3
Q ss_pred HHHhcCCCCCccCCCCCeeEEeccCCcccccC---------------------------------CCCcchHHHHhh-cc
Q psy5344 4 AVKSLNGDPQKINPICPSDLVIDHSVQVDFSR---------------------------------SGVSSHGVVVTA-LA 49 (566)
Q Consensus 4 ~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~---------------------------------~~~~~HQv~lE~-la 49 (566)
.|+++|. ..+||..+ .+++||++|++..+ .+++||||++|+ ++
T Consensus 44 ~~~~~g~--~v~~P~~~-~~~~DH~vp~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi~~~~~~~p~~GI~Hqv~~E~G~~ 120 (471)
T PRK12466 44 GLRARGR--TVRRPDLT-LAVVDHVVPTRPGRDRGITDPGGALQVDYLRENCADFGIRLFDVDDPRQGIVHVVAPELGLT 120 (471)
T ss_pred HHHHcCC--cccCCCCe-EEEeCCCCCCCccccccccCHHHHHHHHHHHHHHHHcCCeeeccCCCCCCEEeEEccccCcc
Confidence 3556664 46788866 69999999986411 014599999999 88
Q ss_pred c----------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccc
Q psy5344 50 L----------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVG 108 (566)
Q Consensus 50 ~----------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~g 108 (566)
. | ||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++|
T Consensus 121 ~PG~~ivg~DSHT~t~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g 200 (471)
T PRK12466 121 LPGMVIVCGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATG 200 (471)
T ss_pred cCCceEEccCCCcCCcChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccc
Confidence 8 6 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCC---CCC-
Q psy5344 109 KFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKG---YGL- 184 (566)
Q Consensus 109 k~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~---y~~- 184 (566)
|+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.++|.++.. +|.++ +..|.. +++
T Consensus 201 ~~iEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~~------~~~~~-~~~~~~~~~D~~a 273 (471)
T PRK12466 201 YAIEFAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKGA------LWDAA-LAYWRTLRSDADA 273 (471)
T ss_pred eEEEEECCccccCCHHHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhHH------HHHHH-HhhhhcccCCCCC
Confidence 9999999999999999999999999999999999999999999999999886432 33333 333322 222
Q ss_pred -CcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccce--------------------eecCc--cceeccceE
Q psy5344 185 -KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQF--------------------EFEGK--TYTLKHGSV 241 (566)
Q Consensus 185 -~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v--------------------~~~g~--~~~l~~g~V 241 (566)
+++++|| |||. +.|++++|++|+|+..+..+ ++++. ..++.+.+|
T Consensus 274 ~Y~~~i~i--Dls~----------leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~~~~~~~~~~y~~l~~g~~~~~~~I 341 (471)
T PRK12466 274 VFDREVEI--DAAD----------IAPQVTWGTSPDQAVPITGRVPDPAAEADPARRAAMERALDYMGLTPGTPLAGIPI 341 (471)
T ss_pred ceEEEEEE--Eccc----------ceEeecCCCChhhceEccccCcChhhhcchhhhhhhhhhhhhcccCCCcccCCceE
Confidence 2679999 9982 24557888899987544332 11111 124677899
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccC
Q psy5344 242 VIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGN 321 (566)
Q Consensus 242 ~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~ 321 (566)
++||||||||||+||++.||++| ||+||+||||++|+|||++|+++|+++||+++|+++||.|.+||||+|+|+
T Consensus 342 d~~~IGSCTNgr~eDl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~ 415 (471)
T PRK12466 342 DRVFIGSCTNGRIEDLRAAAAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAM 415 (471)
T ss_pred EEEEEeccCCCChHHHHHHHHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCc
Confidence 99999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 322 SGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 322 ~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
++++ +.+||+ +|||+||||+||||+ ...+|||||++||||||+|+|+
T Consensus 416 ~~~~-------~~~ge~---~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 416 NDDV-------LAPGER---CASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred CCCC-------CCCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEeC
Confidence 8764 366786 489999999999998 5567999999999999999997
No 20
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=5.5e-91 Score=750.71 Aligned_cols=338 Identities=25% Similarity=0.309 Sum_probs=284.3
Q ss_pred HHHHhcCCCCCccCCCCCeeEEeccCCccccc----------------------------C----CCCcchHHHHhh-cc
Q psy5344 3 DAVKSLNGDPQKINPICPSDLVIDHSVQVDFS----------------------------R----SGVSSHGVVVTA-LA 49 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~----------------------------~----~~~~~HQv~lE~-la 49 (566)
.+|+++|.+ ..+|. ++.+++||++|++.. . ..++||||++|+ ++
T Consensus 42 ~~~~~~g~~--v~~p~-~~~~~~DH~v~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi~~~~~~~~~~GI~Hqv~~E~g~~ 118 (466)
T PRK05478 42 EGLRLAGRK--VRRPD-LTFATMDHNVPTTDRDLPIADPVSRIQVETLEKNCKEFGITLFDLGDPRQGIVHVVGPEQGLT 118 (466)
T ss_pred HHHHHcCCC--ccCCC-CeEEEcCCCCCCCcccccccCHHHHHHHHHHHHHHHHcCCeeeccCCCCCCEeCeEccccccc
Confidence 356677753 34565 668899999998643 1 125699999999 88
Q ss_pred c----------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccc
Q psy5344 50 L----------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVG 108 (566)
Q Consensus 50 ~----------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~g 108 (566)
. | ||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++|
T Consensus 119 ~PG~~ivGtDSHT~t~GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g 198 (466)
T PRK05478 119 LPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTG 198 (466)
T ss_pred cCCceEEecCCCccccchhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcce
Confidence 8 7 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCC---CCC-
Q psy5344 109 KFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKG---YGL- 184 (566)
Q Consensus 109 k~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~---y~~- 184 (566)
|+|||+|||+++||+++|+|||||++|+|||+||||+|++|++||+.++++.. .+ +|.++ +..|+. +++
T Consensus 199 ~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~~----~~--~~~~a-~~~~~~l~~D~~a 271 (466)
T PRK05478 199 YVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAPK----GE--DWDKA-VAYWKTLKSDEDA 271 (466)
T ss_pred EEEEEECccccccCHHHHhhhhhcccccCceeeeecCCHhHHHHHhcCCcccc----HH--HHHHH-HHhhhcccCCCCC
Confidence 99999999999999999999999999999999999999999999996655431 11 23333 333322 112
Q ss_pred -CcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccce--------------------eecC--ccceeccceE
Q psy5344 185 -KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQF--------------------EFEG--KTYTLKHGSV 241 (566)
Q Consensus 185 -~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v--------------------~~~g--~~~~l~~g~V 241 (566)
++++++| |||. +.|++++|++|+++..+..+ ++++ ...++++++|
T Consensus 272 ~Y~~~i~i--Dls~----------leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~i 339 (466)
T PRK05478 272 VFDKVVTL--DAAD----------IEPQVTWGTNPGQVISIDGKVPDPEDFADPVKRASAERALAYMGLKPGTPITDIKI 339 (466)
T ss_pred ceeEEEEE--Eccc----------ceeeecCCCChhhceEccccCcChhhhcchhhhhhhhhhhhhcccccCCccCCCeE
Confidence 2679999 9982 23557888889886544331 0111 1124788899
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccC
Q psy5344 242 VIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGN 321 (566)
Q Consensus 242 ~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~ 321 (566)
+|||||||||||+||++.||++| ||+||+||||++|+|||++|++||+++|++++|+++||.|.+||||+|+|+
T Consensus 340 d~~~IGSCTNg~~~dl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~ 413 (466)
T PRK05478 340 DKVFIGSCTNSRIEDLRAAAAVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAM 413 (466)
T ss_pred EEEEEecCCCCCcHHHHHHHHHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCc
Confidence 99999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 322 SGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 322 ~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+++. +.+|++ +|||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 414 ~~~~-------l~~ge~---~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 414 NPDK-------LPPGER---CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred CCCC-------CCCCCE---EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 8552 478886 48999999999999544 59999999999999999997
No 21
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=2.9e-90 Score=733.57 Aligned_cols=324 Identities=25% Similarity=0.370 Sum_probs=282.5
Q ss_pred HHHHhcCCCCCccCCCCCeeEEeccCCccc-------------ccC----------CCCcchHHHHhh-ccc--------
Q psy5344 3 DAVKSLNGDPQKINPICPSDLVIDHSVQVD-------------FSR----------SGVSSHGVVVTA-LAL-------- 50 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~lviDHsv~~d-------------~~~----------~~~~~HQv~lE~-la~-------- 50 (566)
+.++++|.+ ...+|. .+.+++||.+|.. |++ ..++|||+++|+ +++
T Consensus 40 ~~~~~~g~~-~v~~P~-~v~~~~DH~~p~~~~~~a~~~~~~r~fa~~~gi~~~~~~g~GI~H~v~~E~g~~~PG~~iig~ 117 (412)
T TIGR01343 40 RRLEEYGID-KVFDPE-RIVIVVDHVVPASTIKAAEMQKLAREFVKKTGIKHFFDVGEGICHQVLPEEGLVKPGDLVVGA 117 (412)
T ss_pred HHHHHcCCC-cCCCCC-cEEEEcCCCCCCCChhHHHHHHHHHHHHHHcCCceeecCCCCEEEEEchhhCcCCCCcEEEec
Confidence 456777752 224444 4599999999863 222 235699999999 888
Q ss_pred --c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCc
Q psy5344 51 --H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117 (566)
Q Consensus 51 --H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~g 117 (566)
| ||||++|++.+|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|+|
T Consensus 118 DSHT~t~GalGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~ 197 (412)
T TIGR01343 118 DSHTCTYGALGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGET 197 (412)
T ss_pred CCCcCCcCchhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCc
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCC
Q psy5344 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGF 197 (566)
Q Consensus 118 v~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~ 197 (566)
+++||+++|+|||||++|+||++||||+|++|++||+.++|.+ |+. +++ +..+.| +++++| |||+
T Consensus 198 i~~Ls~~~R~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~-------~~~-~~~--D~da~Y---~~~i~i--Dls~ 262 (412)
T TIGR01343 198 IKNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEP-------FRV-YKS--DEDAEY---AKEVEI--DASQ 262 (412)
T ss_pred ccccCHHHHhhhhccccccCceeeEecCcHHHHHHHHhhCccc-------ccc-cCC--CCCCCE---EEEEEE--Eccc
Confidence 9999999999999999999999999999999999999997653 212 233 234556 779999 9983
Q ss_pred ccccccccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 198 DVVGFGCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 198 d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
+.|++++|.+|+++. +++ +.|. +|+|||||||||||+||++.||++| +|+||+
T Consensus 263 ----------leP~va~P~~Pdnv~---~v~~~~g~-------~id~~~IGSCTngr~~Dl~~aA~il------~G~kv~ 316 (412)
T TIGR01343 263 ----------LEPVVAAPHNVDNVH---PVSEVEGI-------EVDQVFIGSCTNGRIEDLRVAAKIL------KGRKVA 316 (412)
T ss_pred ----------ceeeEecCCCCCcEE---EhHHhCCC-------eeeEEEEecCCCCChHHHHHHHHHH------cCCCCC
Confidence 245578888998864 444 3443 5999999999999999999999998 899999
Q ss_pred CceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCC
Q psy5344 277 PYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHP 356 (566)
Q Consensus 277 p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~ 356 (566)
|+||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++... +.+|++ +|||+||||+||||+
T Consensus 317 ~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~-------l~~ge~---~vsT~NRNF~GR~G~ 386 (412)
T TIGR01343 317 PDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGV-------LAPGEV---CISTSNRNFKGRMGD 386 (412)
T ss_pred CCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCc-------CCCCCE---EEEecCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999987442 367786 489999999999999
Q ss_pred CcCceeecCHHHHHHHHHcCccc
Q psy5344 357 NTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 357 ~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+.+.+|||||++||||||+|+|+
T Consensus 387 ~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 387 PNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred CCCcEEECCHHHHHHHHhCcccC
Confidence 88899999999999999999997
No 22
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=5.3e-90 Score=732.72 Aligned_cols=324 Identities=28% Similarity=0.380 Sum_probs=281.9
Q ss_pred HHHHhcCCCCCccCCCCCeeEEeccCCccc----------------------ccC-CCCcchHHHHhh-ccc--------
Q psy5344 3 DAVKSLNGDPQKINPICPSDLVIDHSVQVD----------------------FSR-SGVSSHGVVVTA-LAL-------- 50 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~lviDHsv~~d----------------------~~~-~~~~~HQv~lE~-la~-------- 50 (566)
+.++++|.++ ..+|. .+.+++||.+|+. |+. ..++|||+++|+ +++
T Consensus 43 ~~~~~~g~~~-v~~P~-~~~~~~DH~~p~~~~~~a~~~~~~r~fa~~~gi~~~~~~g~GI~H~v~~E~g~~~PG~~ivg~ 120 (418)
T PRK00402 43 KEFEKIGGDK-VFDPS-KIVIVFDHFVPAKDIKSAEQQKILREFAKEQGIPNFFDVGEGICHQVLPEKGLVRPGDVVVGA 120 (418)
T ss_pred HHHHHcCCCc-cCCCC-cEEEECCCCCCCCChhhHHHHHHHHHHHHHcCCcceeCCCCCEeeEehhhcCccCCCcEEEeC
Confidence 3456666632 24554 4599999999862 222 236699999999 888
Q ss_pred --c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCc
Q psy5344 51 --H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117 (566)
Q Consensus 51 --H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~g 117 (566)
| ||||++|++.+|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|+|
T Consensus 121 DSHT~t~GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~ 200 (418)
T PRK00402 121 DSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGET 200 (418)
T ss_pred CCCccccCccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCc
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCC
Q psy5344 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGF 197 (566)
Q Consensus 118 v~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~ 197 (566)
+++||+++|+|||||++|+|||+||||+|++|++||+.+++.+ | .++++ +..+.| +++++| |||+
T Consensus 201 i~~Ls~~~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~-------~-~~l~~--D~~a~Y---~~~i~i--Dls~ 265 (418)
T PRK00402 201 IEALSMDERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRD-------Y-KPWKS--DEDAEY---EEVYEI--DLSK 265 (418)
T ss_pred cccCCHHHHhhhhhcccccCceeeEecCChHHHHHHHhhcccc-------c-ccccC--CCCCCE---EEEEEE--Eccc
Confidence 9999999999999999999999999999999999999986443 2 22344 234556 779999 9983
Q ss_pred ccccccccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 198 DVVGFGCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 198 d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
+.|++++|.+|+++. +++ +.+ .+|++||||||||||+||++.||++| ||+||+
T Consensus 266 ----------leP~va~P~~Pdnv~---~v~~~~g-------~~id~~~IGSCTngr~eDl~~aA~il------~G~kv~ 319 (418)
T PRK00402 266 ----------LEPQVAAPHLPDNVK---PVSEVEG-------TKVDQVFIGSCTNGRLEDLRIAAEIL------KGRKVA 319 (418)
T ss_pred ----------ceeeeecCCCcccee---EchhhCC-------ceeeEEEEecCCCCChHHHHHHHHHH------cCCCCC
Confidence 245578888998864 443 344 36999999999999999999999998 999999
Q ss_pred CceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCC
Q psy5344 277 PYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHP 356 (566)
Q Consensus 277 p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~ 356 (566)
|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|++... +.+|++ +|||+||||+||||+
T Consensus 320 ~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~-------~~~ge~---~vsT~NRNF~GR~G~ 389 (418)
T PRK00402 320 PGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGV-------LAPGEV---CLSTTNRNFKGRMGS 389 (418)
T ss_pred CCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCc-------CCCCCE---EEEecCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999986442 366775 489999999999999
Q ss_pred CcCceeecCHHHHHHHHHcCccc
Q psy5344 357 NTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 357 ~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+.+.+|||||++||||||+|+|+
T Consensus 390 ~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 390 PESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred CCCeEEECCHHHHHHHHhCCeeC
Confidence 88899999999999999999997
No 23
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=9.9e-90 Score=729.55 Aligned_cols=324 Identities=27% Similarity=0.358 Sum_probs=285.1
Q ss_pred HHHHhcCCCCCccCCCCCeeEEeccCCccc-------------ccC---------CCCcchHHHHhh-ccc---------
Q psy5344 3 DAVKSLNGDPQKINPICPSDLVIDHSVQVD-------------FSR---------SGVSSHGVVVTA-LAL--------- 50 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~lviDHsv~~d-------------~~~---------~~~~~HQv~lE~-la~--------- 50 (566)
+.++++| .+.++|. .+.+++||.+|+. |++ ..++|||+++|+ +++
T Consensus 41 ~~~~~~g--~~v~~p~-~~~~~~DH~~p~~~~~~a~~~~~~r~fa~~~gi~~~~~g~GI~H~v~~E~G~~~PG~~iig~D 117 (412)
T TIGR02086 41 ETLRELG--ARVEDPE-KIVIFFDHVVPPPTVEAANRQKEIREFAKEHGIPVFDVGEGICHQVLVEEGYAGPGMVVVGGD 117 (412)
T ss_pred HHHHHcC--CcccCCC-CEEEECCCCCCCCCHHHHHHHHHHHHHHHHcCCcEECCCCCeEeEEhhhcCccCCCcEEEecC
Confidence 4567777 4556666 4699999999873 222 245699999999 988
Q ss_pred -c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCcc
Q psy5344 51 -H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGV 118 (566)
Q Consensus 51 -H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv 118 (566)
| ||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+
T Consensus 118 SHT~t~GalGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v 197 (412)
T TIGR02086 118 SHTCTSGAVGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPI 197 (412)
T ss_pred CCccccchhhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccc
Confidence 7 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCCc
Q psy5344 119 KELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFD 198 (566)
Q Consensus 119 ~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~d 198 (566)
++||+++|+|||||++|+||++||||+|++|++||+.++|.+ | ..+++ +..+.| +++++| |||+
T Consensus 198 ~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~-------~-~~~~~--D~~a~Y---~~~i~i--Dls~- 261 (412)
T TIGR02086 198 EAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYE-------F-RILRP--DPGAKY---DDEIEI--DLSD- 261 (412)
T ss_pred cccCHHHHhhhhhcccccCceeeEecCCHHHHHHHHhcCCcc-------c-ccccC--CCCCCE---EEEEEE--Eccc-
Confidence 999999999999999999999999999999999999998764 2 12334 234556 779999 9983
Q ss_pred cccccccccccCCCCCCCCCCCCCcccceeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCc
Q psy5344 199 VVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPY 278 (566)
Q Consensus 199 ~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~ 278 (566)
| .|++++|.+|+++..+.. +.+ .+||+||||||||||+|||+.||++| ||+||+|+
T Consensus 262 ---l------eP~va~P~~P~nv~~v~~--~~~-------~~id~~~IGSCTngr~~Dl~~aA~vL------kG~kv~~~ 317 (412)
T TIGR02086 262 ---L------EPLVAVPHSVDNVRPVSD--VEG-------TEIDQVFIGSCTNGRIEDLRIAAEIL------EGRRVHPD 317 (412)
T ss_pred ---e------eEEecCCCChHhcccchh--hcc-------cceeEEEEeccCCCChHHHHHHHHHH------cCCCCCCC
Confidence 2 455788889988653322 344 35999999999999999999999998 99999999
Q ss_pred eeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCc
Q psy5344 279 IKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNT 358 (566)
Q Consensus 279 Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~ 358 (566)
||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++..+ +.+|++ +|||+||||+||||+..
T Consensus 318 v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~-------~~~ge~---~vsT~NRNF~GR~G~~~ 387 (412)
T TIGR02086 318 VRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGV-------LGDGEV---CVSTTNRNFRGRMGSPD 387 (412)
T ss_pred cCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCc-------CCCCCE---EEEecCCCCCcCCCCCC
Confidence 99999999999999999999999999999999999999999998542 477886 48999999999999988
Q ss_pred CceeecCHHHHHHHHHcCccc
Q psy5344 359 RANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 359 ~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+++|||||++||||||+|+|+
T Consensus 388 ~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 388 AEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred CcEEECCHHHHHHHHhCCccC
Confidence 899999999999999999997
No 24
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=2.5e-90 Score=747.14 Aligned_cols=344 Identities=36% Similarity=0.497 Sum_probs=263.0
Q ss_pred HHHhcCCCCCccCCCCCeeEEeccCCccccc---------------------------------CCCCcchHHHHhh-cc
Q psy5344 4 AVKSLNGDPQKINPICPSDLVIDHSVQVDFS---------------------------------RSGVSSHGVVVTA-LA 49 (566)
Q Consensus 4 ~~~~~g~dp~~inp~~p~~lviDHsv~~d~~---------------------------------~~~~~~HQv~lE~-la 49 (566)
.++++|.. ..+|. .+++++||++|++.. +..++||||++|+ ++
T Consensus 43 ~l~~~g~~--v~~p~-~v~~~~DH~vp~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~gi~~~~~~~~GI~Hqv~~E~g~~ 119 (465)
T PF00330_consen 43 DLRAMGEK--VRDPD-KVVLVIDHSVPADDIGSANLQIEDARNRERYRFLRWFAKEFGIKFFDPGGPGICHQVLPEEGLV 119 (465)
T ss_dssp HHHHHCHC--CHSTT-SEEEE--SS--BSS-HHHHHHHHHHHCHHHHHHHHHHHHHCTTEEEETTSSBSHHHHHHHHTT-
T ss_pred hHHHCCCc--eecCC-CceEEecCccccccccchhcchhhHHHHHHHHHHHHHHHHcCCceecCCCCCeeeeeehhhccc
Confidence 35566642 23555 479999999997533 1125599999999 77
Q ss_pred c----------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccc
Q psy5344 50 L----------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVG 108 (566)
Q Consensus 50 ~----------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~g 108 (566)
. | ||||++|++++|++|++||++||+|+|+|+|+|++|||||||||+|+++|+++|++|
T Consensus 120 ~PG~~vvg~DSHT~t~GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~ 199 (465)
T PF00330_consen 120 LPGMTVVGTDSHTCTYGALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATG 199 (465)
T ss_dssp STTEEEEESSTTGGGGGGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTT
T ss_pred cceeEEEeCCCCcchhhhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCC
Confidence 7 6 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCC-Ccc
Q psy5344 109 KFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGL-KSQ 187 (566)
Q Consensus 109 k~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~-~~~ 187 (566)
|+|||+|||+++||+++|||||||++|+||++||||+|++|++||+.++|.+...++.+ .|.+. +.++.+.+. +++
T Consensus 200 ~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~--~~~~~-~~l~~D~dA~Y~~ 276 (465)
T PF00330_consen 200 KAVEFFGPGVESLSMDDRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDE--AYAKW-QGLKSDPDAEYDK 276 (465)
T ss_dssp EEEEEESGGGGGS-HHHHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHH--HHHHH-GCSS--TT---SE
T ss_pred eEEEEEChhhhhcCHhhhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHH--hhhhh-hhccCCCccCeeE
Confidence 99999999999999999999999999999999999999999999999999876554433 33333 334433211 277
Q ss_pred eeeccccCCCccccccccccccCCCCCCCCCCCCCcccc--------------------eeecC--ccceeccceEEEEE
Q psy5344 188 VIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQ--------------------FEFEG--KTYTLKHGSVVIAA 245 (566)
Q Consensus 188 viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~--------------------v~~~g--~~~~l~~g~V~~a~ 245 (566)
+++| |||. +.|++++|.+|+++..+.. +.+++ ...++++++|++||
T Consensus 277 ~i~i--Dls~----------leP~va~P~~P~~~~~v~e~~~~~~~~~~~v~~~~~~kal~y~~~~~~~~~~~~~i~~~~ 344 (465)
T PF00330_consen 277 VIEI--DLSE----------LEPQVAGPHSPDNVVPVSEVAPDFASILDPVEREAAEKALDYMGLKPGQELEGTKIDQAF 344 (465)
T ss_dssp EEEE--EGGG-----------SSEEE-SSSTTSEEEHHHHHHHHHHHH----CCGCC-EEEECHTTEEEEEETTBEEEEE
T ss_pred EEEE--EcCc----------cccccccCCCCcccccccccccccccccccccccccccccccccccccccccceeeeEEE
Confidence 9999 9982 2345677888888654322 12222 23678899999999
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCC
Q psy5344 246 ITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPL 325 (566)
Q Consensus 246 IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l 325 (566)
||||||||+||+++||++|+++++ ++++|+||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++ +
T Consensus 345 IgSCTn~~~~dl~~aA~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~ 420 (465)
T PF00330_consen 345 IGSCTNGRNEDLRAAAGILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-L 420 (465)
T ss_dssp EETTTSCTHHHHHHHHHHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS--
T ss_pred EcCCcCCCHHHHHHHHHHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-C
Confidence 999999999999999999977665 799999999999999999999999999999999999999999999999996 3
Q ss_pred CccccccccC-CceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcC
Q psy5344 326 DPPIVDAIEK-NELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAG 376 (566)
Q Consensus 326 ~~~v~~~i~~-g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG 376 (566)
.+. +.+ +++ +|||+||||+||||+..+.+|||||++||||||+|
T Consensus 421 ~~~----~~~~~~~---~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 421 PDV----LAPLGEV---CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp -CC----HCCTTEE---EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred Ccc----cccccce---EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 322 344 664 59999999999999999999999999999999998
No 25
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=2.9e-89 Score=725.82 Aligned_cols=327 Identities=29% Similarity=0.375 Sum_probs=283.1
Q ss_pred HHHHhcCCCCCccCCCCCeeEEeccCCccc----------------------ccC--CCCcchHHHHhh-ccc-------
Q psy5344 3 DAVKSLNGDPQKINPICPSDLVIDHSVQVD----------------------FSR--SGVSSHGVVVTA-LAL------- 50 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~lviDHsv~~d----------------------~~~--~~~~~HQv~lE~-la~------- 50 (566)
+.|+++|. +...||. .+.+++||.+|+. |+. ++++|||++.|+ |++
T Consensus 42 ~~f~~~g~-~~V~dp~-~v~~~~DH~vpa~~~~~a~~~~~~r~fa~~~gi~~f~d~g~~GI~H~v~~E~g~~~PG~~ivg 119 (419)
T TIGR02083 42 KAFKEYGG-KKVFDPD-RVALVPDHFTPNKDIKSAEQCKMMREFAREQGIEKFFEIGNMGIEHALLPEEGIVKPGDLIIG 119 (419)
T ss_pred HHHHHcCC-CcCCCCC-CEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCcceecCCCcceeeeeccccCccCCCeEEEe
Confidence 45777775 2224444 4499999999972 332 347899999997 998
Q ss_pred ---c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccC
Q psy5344 51 ---H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGP 116 (566)
Q Consensus 51 ---H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~ 116 (566)
| ||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|++.|+++|++||+|||+|+
T Consensus 120 ~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~ 199 (419)
T TIGR02083 120 ADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGE 199 (419)
T ss_pred cCCCccccCccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECC
Confidence 7 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCC
Q psy5344 117 GVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLG 196 (566)
Q Consensus 117 gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs 196 (566)
|+++||+++|||||||++|+||++||||+|++|++||+.+++++ |+. +.+ +..+.| +++++| |||
T Consensus 200 ~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~-------~~~-~~~--D~dA~Y---~~~~~i--Dls 264 (419)
T TIGR02083 200 GLKELSMDDRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE-------EKI-YKA--DEDAKY---VRVIEI--DLS 264 (419)
T ss_pred ccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHhhCCccc-------hhc-ccC--CCCCCE---EEEEEE--Ecc
Confidence 99999999999999999999999999999999999999876442 211 233 234456 779999 998
Q ss_pred CccccccccccccCCCCCCCCCCCCCcccceeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 197 FDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 197 ~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
+ +.|++++|++|+|+..+..+...+ .+|+|||||||||||+|||+.||++| ||+||+
T Consensus 265 ~----------leP~va~P~~pdnv~~v~e~~~~g-------~~id~v~IGSCTngr~eDl~~AA~iL------kG~kv~ 321 (419)
T TIGR02083 265 E----------LEPQVAFPHLPENTKDISEAGKEE-------IKIDQVVIGSCTNGRLEDLRLAAEIL------KGKTVA 321 (419)
T ss_pred c----------cceeecCCCCcccCcChhhccccc-------CccCeEEEEcCCCCChHHHHHHHHHH------cCCCCC
Confidence 3 245578888999876444332223 36999999999999999999999998 999999
Q ss_pred CceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCC
Q psy5344 277 PYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHP 356 (566)
Q Consensus 277 p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~ 356 (566)
++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++... +.+||+ +|||+||||+||||+
T Consensus 322 ~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~-------l~~ge~---~vsT~NRNF~GRmG~ 391 (419)
T TIGR02083 322 PDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGI-------LAEGER---AISTTNRNFVGRMGH 391 (419)
T ss_pred CCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCc-------CCCCCE---EEEecCCCCCccCCC
Confidence 9999999999999999999999999999999999999999999987432 367775 489999999999998
Q ss_pred CcCceeecCHHHHHHHHHcCccc
Q psy5344 357 NTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 357 ~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+.+.+|||||++||||||+|+|+
T Consensus 392 ~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 392 PKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred CCCeEEECCHHHHHHHHhCCCcC
Confidence 77889999999999999999997
No 26
>KOG0453|consensus
Probab=100.00 E-value=1.7e-88 Score=725.32 Aligned_cols=429 Identities=28% Similarity=0.402 Sum_probs=351.8
Q ss_pred CCCeeEEeccCCccc-------------------------------ccC-CCCcchHHHHhhccc----------c----
Q psy5344 18 ICPSDLVIDHSVQVD-------------------------------FSR-SGVSSHGVVVTALAL----------H---- 51 (566)
Q Consensus 18 ~~p~~lviDHsv~~d-------------------------------~~~-~~~~~HQv~lE~la~----------H---- 51 (566)
.+|+.++|||.+.+. |++ ..+++||++||+||. |
T Consensus 115 avPstIhCdhli~a~~gg~~Dl~~a~~~Nkevydfl~saakkygi~Fw~pGsGIiHQIvlEnYAfPG~m~igTDSHTpn~ 194 (778)
T KOG0453|consen 115 AVPSTIHCDHLIEAQVGGDKDLQRASDLNKEVYDFLESAAKKYGIGFWKPGSGIIHQIVLENYAFPGLMMIGTDSHTPNA 194 (778)
T ss_pred cCCceEEecceeeeccCCcchhhhhhhhhHHHHHHHHHHHHhcCCCccCCCCceeeeeeeecccCCcceEEeccCCCCCC
Confidence 358899999977653 222 234499999999999 7
Q ss_pred -------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCcccccCcc
Q psy5344 52 -------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIA 124 (566)
Q Consensus 52 -------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 124 (566)
+||||+||+++|+++||.++.|+++||+|||+|+.|+|+|||||++.+.|.++|++|++||||||||++||++
T Consensus 195 GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSct 274 (778)
T KOG0453|consen 195 GGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCT 274 (778)
T ss_pred CccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhh-hhhhhhhhhcCCCCCCCCcceeeccccCCCcccccc
Q psy5344 125 DRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSR-WRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFG 203 (566)
Q Consensus 125 dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~-~~~y~~ad~~~~~~y~~~~~viei~~DLs~d~v~l~ 203 (566)
.|+|||||++|.|||+|+||+|+.+++||+.|||.+..-...+ .++++.+ +..+.| +++||| |||.
T Consensus 275 gm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~ia~~a~~~~~~~l~A--D~~a~Y---dk~ieI--dLst------ 341 (778)
T KOG0453|consen 275 GMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEIAREARETLDAILAA--DKGAHY---DKIIEI--DLST------ 341 (778)
T ss_pred cceeeccccccccccccccCCCHHHHHHHHHhCcccchhhhHHhhhhcccC--CCCCCc---ceEEEE--Ehhh------
Confidence 9999999999999999999999999999999999864332222 1234555 334556 789999 9982
Q ss_pred ccccccCCCCCCCCCCCCCccccee--ecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceee
Q psy5344 204 CMTCIGNSGPLDPPIDKLGATGQFE--FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKT 281 (566)
Q Consensus 204 ~~~~~~~~v~~~~~p~~~~~~~~v~--~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~ 281 (566)
+.|.+.-|++|+-...+..+. .+...+++ +|..++||||||+||+|+-.+| -++++|..+|+| |.|.+
T Consensus 342 ----L~P~vnGPfTpdl~~pvskl~e~~~kn~wp~---~i~~gligSCTNSsyeDm~raa-~iv~~a~~~glk--~~v~F 411 (778)
T KOG0453|consen 342 ----LEPHVNGPFTPDLSTPVSKLGENSEKNGWPI---KIKVGLIGSCTNSSYEDMSRAA-DIVKQAKGKGLK--PKVPF 411 (778)
T ss_pred ----cccccCCCCCccccChHHHHhHHhhhcCCce---eeeeeEEEeecCccHHHHHHHH-HHHHHHHhcCCC--CCcce
Confidence 234455677887655444332 11122444 4788999999999999966666 455888877766 55999
Q ss_pred eecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCc-Cc
Q psy5344 282 SLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNT-RA 360 (566)
Q Consensus 282 ~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~-~~ 360 (566)
.|+|||.+|+..++|+|+++.|+++|+.+++++||||||+|.+ +.|++||.. +.|+|+||||.|||+.+. ..
T Consensus 412 ~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r------~dvk~GE~n-tivts~NRNFtgRnd~np~t~ 484 (778)
T KOG0453|consen 412 YVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDR------KDIKKGEKN-TIVTSYNRNFTGRNDANPATH 484 (778)
T ss_pred EeccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCccccccc------ccccCCCcC-ceeeeecccccccCCCCcchh
Confidence 9999999999999999999999999999999999999999965 135677764 358999999999999776 56
Q ss_pred eeecCHHHHHHHHHcCccccCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccC
Q psy5344 361 NYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQA 440 (566)
Q Consensus 361 ~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~ 440 (566)
.||+||++|+|+|++|++.+|+++|.| .++||+.|.|+. |..+|+++ +-++|. ....+.-+.
T Consensus 485 afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g------------~~ty~ap~~ 546 (778)
T KOG0453|consen 485 AFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPG------------QDTYQAPPS 546 (778)
T ss_pred hcccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCC------------cccccCCCC
Confidence 799999999999999999999999999 789999999987 88888763 233442 222222211
Q ss_pred CC-CCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCCC
Q psy5344 441 PE-GQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIA 500 (566)
Q Consensus 441 ~~-~~~~~Wd~~styI~~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~ 500 (566)
+. .....-|++|+.++....|+++. .+|++++.+|+|+.++|||||||.||+|.
T Consensus 547 ~~~~~~v~v~p~s~rlqlLepF~~w~------gkd~edl~ilikv~gkCttDhIsaaGpwl 601 (778)
T KOG0453|consen 547 SSSVVEVDVDPTSDRLQLLEPFDKWD------GKDLEDLKILIKVKGKCTTDHISAAGPWL 601 (778)
T ss_pred CCCcceeecCCcccchhhcCCCCccc------ccccccceEEEEEecccCccccccCCcce
Confidence 11 13567789999999888887654 67899999999999999999999999993
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-88 Score=700.10 Aligned_cols=328 Identities=25% Similarity=0.356 Sum_probs=282.6
Q ss_pred HHHHhcCCCCCccCCCCCeeEEeccCCccc----------------------cc--CCCCcchHHHHhh-ccc-------
Q psy5344 3 DAVKSLNGDPQKINPICPSDLVIDHSVQVD----------------------FS--RSGVSSHGVVVTA-LAL------- 50 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~lviDHsv~~d----------------------~~--~~~~~~HQv~lE~-la~------- 50 (566)
+.|+++|. +..+|. .+.+++||++|.+ |+ +.+++||||..|. |+.
T Consensus 44 ~~lr~~g~--kV~~p~-k~~~~~DH~vPt~~~~~a~~~~~lr~~~ke~Gi~~~~~~g~~GI~H~v~pE~G~~~PG~~Iv~ 120 (423)
T COG0065 44 EGLREAGR--KVRDPE-KTVATFDHNVPTPDIKAAEQQKELRENAKEFGIVNFYDVGDQGIVHQVGPEQGLTLPGMTIVG 120 (423)
T ss_pred HHHHHhCC--cccCcc-ceEEEecCCCCCccHHHHHHHHHHHHHHHHhCCeeeecCCCCcEEEEEeccccccCCCcEEEe
Confidence 35666776 223344 4499999999973 23 3377899999999 888
Q ss_pred ---c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccC
Q psy5344 51 ---H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGP 116 (566)
Q Consensus 51 ---H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~ 116 (566)
| +|+|++|+|.+|++|++|+++||+++|+++|+|++|||||||||+|++.++..|++|+++||+|+
T Consensus 121 gDSHT~T~GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge 200 (423)
T COG0065 121 GDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGE 200 (423)
T ss_pred cccCcccchhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEecc
Confidence 5 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCC
Q psy5344 117 GVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLG 196 (566)
Q Consensus 117 gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs 196 (566)
.+++|||++|||||||++|+||++|+|+||++|++||+....... .|+. ++. +..+.| +++++| |+|
T Consensus 201 ~i~~lsme~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~~a~~-----~~~~-l~s--D~dA~y---~~~v~~--d~s 267 (423)
T COG0065 201 AIRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWDGAVA-----YWKT-LKS--DEDAVY---DKVVEL--DAS 267 (423)
T ss_pred chhhCChhhhhhhhhhhhhhcccceeeCCcHhHHHHHHHHhcccc-----ccce-ecC--CCCCce---eEEEEE--Ecc
Confidence 999999999999999999999999999999999999994332111 2332 233 233445 679999 997
Q ss_pred CccccccccccccCCCCCCCCCCCCCcccceeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 197 FDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 197 ~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
+ +.|+++||++|+|+..+.. +.+.. .+|||+|||||||||++||++||++| ||+||+
T Consensus 268 ~----------leP~Va~p~~p~nv~~v~e--~~~~~-----i~iDqVFIGSCTNgRieDLr~AA~Il------kgrkva 324 (423)
T COG0065 268 D----------LEPQVAWPTNPDNVVPVSE--VEPDP-----IKIDQVFIGSCTNGRIEDLRAAAEIL------KGRKVA 324 (423)
T ss_pred c----------CCceeeCCCCcccceeccc--ccCCc-----eeeceEEEeccCCccHHHHHHHHHHh------ccCccC
Confidence 2 2566889999998754332 23321 26999999999999999999999888 899999
Q ss_pred CceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCC
Q psy5344 277 PYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHP 356 (566)
Q Consensus 277 p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~ 356 (566)
++||++|+|||+.|+++++++||+++|.+|||.|..|||+||+|++.+ .+.+||+| +||+||||+||||+
T Consensus 325 ~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~g-------vL~~gE~c---~STSNRNF~GRqG~ 394 (423)
T COG0065 325 PGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPG-------VLGPGERC---ASTSNRNFEGRQGS 394 (423)
T ss_pred CCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCC-------cCCCCCEE---eeccCCCCCccCCC
Confidence 999999999999999999999999999999999999999999998854 25889974 79999999999998
Q ss_pred CcCceeecCHHHHHHHHHcCccc
Q psy5344 357 NTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 357 ~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
..+.+||+||+++||+|++|+|+
T Consensus 395 ~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 395 PGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred CCCeEEecCHHHHHHHHhhCEec
Confidence 88889999999999999999997
No 28
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=6.1e-85 Score=682.18 Aligned_cols=304 Identities=26% Similarity=0.403 Sum_probs=259.8
Q ss_pred HHhcCCCCCccCCCCCeeEEeccCCccc-------------ccC---------CCCcchHHHHhh-ccc----------c
Q psy5344 5 VKSLNGDPQKINPICPSDLVIDHSVQVD-------------FSR---------SGVSSHGVVVTA-LAL----------H 51 (566)
Q Consensus 5 ~~~~g~dp~~inp~~p~~lviDHsv~~d-------------~~~---------~~~~~HQv~lE~-la~----------H 51 (566)
+.++|. ++..+|. .+.+++||.+|.. |++ ..++|||+++|+ +++ |
T Consensus 15 ~~~~g~-~~v~~p~-~~~~~~DH~vp~~~~~~~~~~~~lr~~ak~~gi~~~~~g~GI~Hqv~~E~g~~~PG~~ivg~DSH 92 (363)
T cd01582 15 FMSIGA-TKIHNPD-QIVMTLDHDVQNKSEKNLKKYKNIESFAKKHGIDFYPAGRGIGHQIMIEEGYAFPGTLAVASDSH 92 (363)
T ss_pred HHHcCC-CccCCCC-CEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCCeEECCCCCEEEEeccccCccCCCeEEEecCCC
Confidence 456665 3334554 4589999999963 222 245699999997 888 6
Q ss_pred -----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCcccc
Q psy5344 52 -----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKE 120 (566)
Q Consensus 52 -----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~ 120 (566)
||||++|++++|+++++|+++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|||+++
T Consensus 93 T~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~ 172 (363)
T cd01582 93 SNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNS 172 (363)
T ss_pred ccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCCccc
Q psy5344 121 LSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVV 200 (566)
Q Consensus 121 LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~d~v 200 (566)
||+++|||||||++|+|||++|||+| +++++| |||+
T Consensus 173 Ls~~~R~Ti~NMa~E~GA~~~i~~~D---------------------------------------~~~~~i--Dls~--- 208 (363)
T cd01582 173 LSVDTRLTIANMTTEWGALSGLFPTD---------------------------------------AKHLIL--DLST--- 208 (363)
T ss_pred CCHHHHhhHHhcccccCcceeEeccC---------------------------------------ceEEEE--Eccc---
Confidence 99999999999999999999999999 017888 9983
Q ss_pred cccccccccCCCCCCCCCCCCCcccceeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcC-CccCCce
Q psy5344 201 GFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAG-LSVAPYI 279 (566)
Q Consensus 201 ~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G-~kv~p~V 279 (566)
| .|+++.|.+|+++..+..+..++ .+|++||||||||+|++|++.||++|..+..++| ++|+|||
T Consensus 209 -l------eP~va~P~~p~~~~~~~~~~~~~-------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~V 274 (363)
T cd01582 209 -L------SPYVSGPNSVKVSTPLKELEAQN-------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGV 274 (363)
T ss_pred -c------eeeeeCCCCCCCcCCHHHhhhcC-------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCc
Confidence 2 34456667777765333321122 3699999999999999999999999843322222 2399999
Q ss_pred eeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcC
Q psy5344 280 KTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTR 359 (566)
Q Consensus 280 k~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~ 359 (566)
|++|+|||++|+++|+++|++++|.++||.|.+|||++|+|+++++ +.+||+ +|||+||||+||||++.+
T Consensus 275 r~~v~PgS~~V~~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~-------~~~ge~---~vsT~NRNF~GR~G~~~~ 344 (363)
T cd01582 275 EFYVAAASSEVQAAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGL-------LEPGEV---GISATNRNFKGRMGSTEA 344 (363)
T ss_pred eEEEeCCCHHHHHHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCC-------CCCCCE---EEEecCCCCCcCCCCCCC
Confidence 9999999999999999999999999999999999999999999774 367886 389999999999999999
Q ss_pred ceeecCHHHHHHHHHcCcc
Q psy5344 360 ANYLASPLLVIAYALAGTV 378 (566)
Q Consensus 360 ~~yLaSP~lVaA~AlaG~I 378 (566)
.+|||||++||||||+|+|
T Consensus 345 ~~yLaSP~~vaAsAi~G~i 363 (363)
T cd01582 345 LAYLASPAVVAASAISGKI 363 (363)
T ss_pred cEEECCHHHHHHHHhCccC
Confidence 9999999999999999986
No 29
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=4.5e-82 Score=673.73 Aligned_cols=326 Identities=18% Similarity=0.187 Sum_probs=266.5
Q ss_pred HHHHhcCCCCCccCCCCCeeEEeccCCccc-------------ccCC---------CCcchHHHHhhccc----------
Q psy5344 3 DAVKSLNGDPQKINPICPSDLVIDHSVQVD-------------FSRS---------GVSSHGVVVTALAL---------- 50 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~lviDHsv~~d-------------~~~~---------~~~~HQv~lE~la~---------- 50 (566)
+.|+++|. +.++|. .+.+++||.+|+. |.++ .++||||+.|+ ++
T Consensus 40 ~~f~~~~~--~v~d~~-~~v~~~DH~~p~~~~~~a~~~~~~r~fa~~~gi~~~~~g~GI~Hqv~~e~-~~PG~~ivGtDS 115 (436)
T cd01581 40 DELKELAC--LGFSAD-LVMQSFCHTAAYPKPVDVKTHRTLPDFISNRGGVALRPGDGVIHSWLNRM-LLPDTVGTGGDS 115 (436)
T ss_pred HHHHHcCC--cccCCc-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHcCCcEECCCCCeeeeeehhh-ccCCceEEeecc
Confidence 46777765 335555 5599999999862 3333 45599998885 56
Q ss_pred c--------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHH----HH--------HhhcCccceE
Q psy5344 51 H--------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTIT----KH--------LRQLGVVGKF 110 (566)
Q Consensus 51 H--------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~----~~--------L~~~G~~gk~ 110 (566)
| ||+|++|++.+|++|++||++||+|+|+|+|+|++||+||||||+|+ +. ++.+|++||+
T Consensus 116 HT~t~ga~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~ 195 (436)
T cd01581 116 HTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRI 195 (436)
T ss_pred ccCCCCceEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceE
Confidence 7 89999999999999999999999999999999999999999999864 44 4445669999
Q ss_pred EEEccCcccccCccccccccccccccCceEeeecCChhH-HHHHhhc----------CCCcc-----hhhhhhhhhhhhh
Q psy5344 111 VEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNS-LEYLKQT----------SKSPG-----CTKVSRWRSGQNA 174 (566)
Q Consensus 111 vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t-~~YL~~t----------gr~~~-----~~~~~~~~~y~~a 174 (566)
|||. |+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||.+. ...+.+ .|.++
T Consensus 196 iEf~--Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~ 271 (436)
T cd01581 196 LEIE--GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAME--EWLAN 271 (436)
T ss_pred EEEC--CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHH--HHHhh
Confidence 9996 599999999999999999999999999999988 8999997 55421 111222 22222
Q ss_pred hhcCCCCCCC--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEeecCCC
Q psy5344 175 RLVGFKGYGL--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAITSCTN 251 (566)
Q Consensus 175 d~~~~~~y~~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~IgSCTN 251 (566)
+..++.+++ +++++|| |||. |. .|++++|++|+++. +++ +.+ .+|+++|||||||
T Consensus 272 -~~~~~~D~da~Y~~~iei--Dls~----l~-----eP~VA~P~~pdn~~---~v~e~~g-------~~id~~~IGSCTn 329 (436)
T cd01581 272 -PPLLEPDADAEYAAVIEI--DLDD----IK-----EPILACPNDPDDVK---LLSEVAG-------KKIDEVFIGSCMT 329 (436)
T ss_pred -cccccCCCCCceEEEEEE--EhHh----CC-----CCeecCCCChhhce---EhHHhcC-------CccceEEEecCCC
Confidence 333443333 2679999 9983 20 34567788888864 443 344 3599999999999
Q ss_pred CCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccc
Q psy5344 252 TSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVD 331 (566)
Q Consensus 252 ~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~ 331 (566)
|++|++.||.+| ||+|++ .||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+.+.
T Consensus 330 -r~eDl~~AA~il------kg~~~~-~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C~G~~~~------- 394 (436)
T cd01581 330 -NIGHFRAAAKIL------RGKEFK-PTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLCMGNQAR------- 394 (436)
T ss_pred -CHHHHHHHHHHH------cCCCCC-CCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccccCcCCc-------
Confidence 999999999887 899964 49999999999999999999999999999999999999999998544
Q ss_pred cccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCcc
Q psy5344 332 AIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTV 378 (566)
Q Consensus 332 ~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 378 (566)
+.+|++ +|||+||||+||||+ .+.+|||||++||||||+|+|
T Consensus 395 -~~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 395 -VADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred -CCCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 478887 489999999999999 778999999999999999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=2.5e-79 Score=649.82 Aligned_cols=333 Identities=36% Similarity=0.473 Sum_probs=283.7
Q ss_pred HHHHhcCCCCCccCCCCCeeEEeccCCccc-------------ccC---------CCCcchHHHHhhccc----------
Q psy5344 3 DAVKSLNGDPQKINPICPSDLVIDHSVQVD-------------FSR---------SGVSSHGVVVTALAL---------- 50 (566)
Q Consensus 3 ~~~~~~g~dp~~inp~~p~~lviDHsv~~d-------------~~~---------~~~~~HQv~lE~la~---------- 50 (566)
+.|+++|.+. ++.+..++.+++||++|++ |.+ ..++|||+++|++++
T Consensus 14 ~~~~~~~~~~-~v~~p~~v~~~~DH~~p~~~~~~~~~~~~lr~f~~~~gi~~~~~g~Gi~H~~~~E~~~~pG~~i~g~DS 92 (389)
T cd01351 14 KAFEILAALG-KVADPSQIACVHDHAVQLEKPVNNEGHKFLSFFAALQGIAFYRPGVGIIHQIMVENLALPGDLLVGSDS 92 (389)
T ss_pred HHHHHcCCCC-CCCCcccEEEEECCCCCCCChhHHHHHHHHHHHHHHcCCcEECCCCCeECcccccccCCCCCEEEEcCc
Confidence 4577777753 3444459999999999973 222 235599999998777
Q ss_pred c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCccc
Q psy5344 51 H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVK 119 (566)
Q Consensus 51 H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~ 119 (566)
| ||+|++|++++|++|++|+++|++++|+|+|+|++||++||++|+|++.|+.+|++|+++||+|+|++
T Consensus 93 HT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~ 172 (389)
T cd01351 93 HTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVS 172 (389)
T ss_pred CccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccC
Confidence 5 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCCcc
Q psy5344 120 ELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDV 199 (566)
Q Consensus 120 ~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~d~ 199 (566)
+||+++|+|||||++|+||++|+||+|++|++||+.++|++.......+...+++ +..+.| +++++| |||+
T Consensus 173 ~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~~~~~~~~~l~~--d~~a~y---~~~i~i--Dls~-- 243 (389)
T cd01351 173 SLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKNLWLAFPEELLA--DEGAEY---DQVIEI--DLSE-- 243 (389)
T ss_pred CCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhHHHHHHHhccCC--CCCCCe---eEEEEE--Ehhh--
Confidence 9999999999999999999999999999999999999988653311111011222 222333 669999 9983
Q ss_pred ccccccccccCCCCCCCCCCCCCcccceeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCce
Q psy5344 200 VGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYI 279 (566)
Q Consensus 200 v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~V 279 (566)
| .|++++|.+|+++..+.. +.+ .+||++|||||||+|++|++.||.+| ||+||+|+|
T Consensus 244 --l------ep~va~p~~p~~~~~v~~--~~~-------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v 300 (389)
T cd01351 244 --L------EPDISGPNRPDDAVSVSE--VEG-------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGV 300 (389)
T ss_pred --c------eeEEecCCChhhccChhh--ccC-------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCc
Confidence 2 334567778887643322 233 36999999999999999999999888 999999999
Q ss_pred eeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcC
Q psy5344 280 KTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTR 359 (566)
Q Consensus 280 k~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~ 359 (566)
|++|+|||++|+++++++|++++|+++||.|..+||++|+|+++++ +.+|++ +|||+||||+||||+..+
T Consensus 301 ~~~v~P~S~~v~~~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~-------~~~g~~---~vst~nRNF~GR~g~~~~ 370 (389)
T cd01351 301 RLIVTPGSRMVYATLSREGYYEILVDSGARILPPGCGPCMGNGARL-------VADGEV---GVSSGNRNFPGRLGTYER 370 (389)
T ss_pred eEEEECCCHHHHHHHHHcChHHHHHHCCCEEeCCCCcccCCCCCCc-------CCCCcE---EEEeecCCCccccCCCCC
Confidence 9999999999999999999999999999999999999999999774 367776 489999999999999998
Q ss_pred ceeecCHHHHHHHHHcCcc
Q psy5344 360 ANYLASPLLVIAYALAGTV 378 (566)
Q Consensus 360 ~~yLaSP~lVaA~AlaG~I 378 (566)
++|||||++||||||+|+|
T Consensus 371 ~~yLaSP~~vaAsAl~G~i 389 (389)
T cd01351 371 HVYLASPELAAATAIAGKI 389 (389)
T ss_pred ceEECCHHHHHHHHhcCcC
Confidence 9999999999999999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=5e-75 Score=651.67 Aligned_cols=329 Identities=19% Similarity=0.187 Sum_probs=272.3
Q ss_pred HHHHHhcCCCCCccCCCCCeeEEeccCCcc-------------cccCC---------CCcchHHHHhhccc---------
Q psy5344 2 RDAVKSLNGDPQKINPICPSDLVIDHSVQV-------------DFSRS---------GVSSHGVVVTALAL--------- 50 (566)
Q Consensus 2 r~~~~~~g~dp~~inp~~p~~lviDHsv~~-------------d~~~~---------~~~~HQv~lE~la~--------- 50 (566)
|+.|+++|. ..++|. .+.+++||.++. +|.++ +|+||||+ +.++.
T Consensus 411 ~~~~~~lg~--~~~~~d-~v~~~~dH~~p~~~~~~a~~~~~lr~Fa~~~Gi~~~~pG~GI~H~vl-~~~~~Pg~vivG~D 486 (835)
T PRK09238 411 RDELKDLAC--LGFSAD-LVMQSFCHTAAYPKPVDVKTHHTLPDFIMNRGGVSLRPGDGVIHSWL-NRMLLPDTVGTGGD 486 (835)
T ss_pred HHHHHHcCC--cccCCC-cEEEEccCCCCCCCHHHHHHHHHHHHHHHHcCCcEeCCCCCeeeecc-cccccCCeEEEecc
Confidence 688899986 333444 449999999886 23333 45599996 55666
Q ss_pred -c--------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHH----HHH--------HhhcCccce
Q psy5344 51 -H--------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTI----TKH--------LRQLGVVGK 109 (566)
Q Consensus 51 -H--------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i----~~~--------L~~~G~~gk 109 (566)
| ||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+| +++ ++++|++||
T Consensus 487 SHT~t~ga~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr 566 (835)
T PRK09238 487 SHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGR 566 (835)
T ss_pred cccCCCCceEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeee
Confidence 7 8999999999999999999999999999999999999999999999 443 444557899
Q ss_pred EEEEccCcccccCccccccccccccccCceEeeec-CChhHHHHHhhc----------CCCcc-----hhhhhhhhhhhh
Q psy5344 110 FVEFFGPGVKELSIADRATISNMCPEYGATVGFFP-VDQNSLEYLKQT----------SKSPG-----CTKVSRWRSGQN 173 (566)
Q Consensus 110 ~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp-~De~t~~YL~~t----------gr~~~-----~~~~~~~~~y~~ 173 (566)
+|||. |+++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||.+. .++..+ .|++
T Consensus 567 ~lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~--~w~~ 642 (835)
T PRK09238 567 ILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAME--EWLA 642 (835)
T ss_pred EEEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHH--HHHh
Confidence 99995 6999999999999999999999999999 788999999986 66432 222222 4444
Q ss_pred hhhcCCCCCCCC--cceeeccccCCCccccccccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEeecCC
Q psy5344 174 ARLVGFKGYGLK--SQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAITSCT 250 (566)
Q Consensus 174 ad~~~~~~y~~~--~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~IgSCT 250 (566)
. +.++..++++ ++++|| |||+.+ .|.+++|++||++. +++ +.+. +||+|||||||
T Consensus 643 ~-~~ll~aD~dA~Y~~vieI--DLs~i~---------eP~VA~P~~Pdnv~---~lsev~g~-------~Id~vfIGSCT 700 (835)
T PRK09238 643 N-PELLEADADAEYAAVIEI--DLAEIK---------EPILACPNDPDDVR---LLSEVAGT-------KIDEVFIGSCM 700 (835)
T ss_pred h-cccccCCCCCceEEEEEE--EhhhcC---------CCeecCCCChhhhe---EHHHhcCC-------ccCeEEEEcCC
Confidence 3 4455544432 679999 998421 24467788888864 444 3443 69999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCcccc
Q psy5344 251 NTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIV 330 (566)
Q Consensus 251 N~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~ 330 (566)
|+++|++.||.+| ||+++++.||++|+|||++|+++|+++|++++|.++||.|..||||+|+||.+.
T Consensus 701 -gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~pGCg~C~G~~~~------ 767 (835)
T PRK09238 701 -TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMPGCSLCMGNQAR------ 767 (835)
T ss_pred -CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCcchhhhCccCc------
Confidence 9999999999887 999999999999999999999999999999999999999999999999999654
Q ss_pred ccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 331 DAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 331 ~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+++|++ +|||+||||+||||+ .+.+|||||++|||+|++|+|+
T Consensus 768 --~~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 768 --VADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred --CCCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 478886 489999999999997 6679999999999999999997
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=2.1e-74 Score=645.11 Aligned_cols=329 Identities=19% Similarity=0.184 Sum_probs=268.6
Q ss_pred HHHHHhcCCCCCccCCCCCeeEEeccCCcc-------------cccCC---------CCcchHHHHhhccc---------
Q psy5344 2 RDAVKSLNGDPQKINPICPSDLVIDHSVQV-------------DFSRS---------GVSSHGVVVTALAL--------- 50 (566)
Q Consensus 2 r~~~~~~g~dp~~inp~~p~~lviDHsv~~-------------d~~~~---------~~~~HQv~lE~la~--------- 50 (566)
|+.|+++|. ..++|. .+.+++||.++. +|+++ +|+|||++.|+ +.
T Consensus 412 ~~~~~~l~~--~vfdpd-~v~~~~DH~~p~~~~~~a~~~~~lr~Fa~~~Gi~~~~pG~GI~Hqvl~e~-~~PG~vivG~D 487 (844)
T TIGR00117 412 RDELKELAC--LGFSAD-LVLQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVALRPGDGVIHSWLNRM-LLPDTVGTGGD 487 (844)
T ss_pred HHHHHHhCC--ceECCC-cEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCeEECCCCceecccchhh-ccCCeeEEecc
Confidence 678888876 334443 449999999886 23333 45599997664 55
Q ss_pred -c--------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHH------HHhh------cCccce
Q psy5344 51 -H--------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITK------HLRQ------LGVVGK 109 (566)
Q Consensus 51 -H--------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~------~L~~------~G~~gk 109 (566)
| +|+|++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|+. .|++ +|++||
T Consensus 488 SHT~t~~G~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk 567 (844)
T TIGR00117 488 SHTRFPLGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGR 567 (844)
T ss_pred ccccccceEEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccce
Confidence 7 799999999999999999999999999999999999999999999943 3333 457899
Q ss_pred EEEEccCcccccCccccccccccccccCceEeeecCCh-hHHHHHhhc----------CCCcc-----hhhhhhhhhhhh
Q psy5344 110 FVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQ-NSLEYLKQT----------SKSPG-----CTKVSRWRSGQN 173 (566)
Q Consensus 110 ~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De-~t~~YL~~t----------gr~~~-----~~~~~~~~~y~~ 173 (566)
++||. |+++||+++|+|||||++|+||++|+||+|+ .|++||+.+ ||.+. .++..+ .|++
T Consensus 568 ~lEf~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e--~w~~ 643 (844)
T TIGR00117 568 ILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGME--KWLA 643 (844)
T ss_pred EEEEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHH--HHHh
Confidence 99996 5999999999999999999999999999996 589999995 66542 222222 3333
Q ss_pred hhhcCCCCCCCC--cceeeccccCCCccccccccccccCCCCCCCCCCCCCcccceeecCccceeccceEEEEEeecCCC
Q psy5344 174 ARLVGFKGYGLK--SQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTN 251 (566)
Q Consensus 174 ad~~~~~~y~~~--~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgSCTN 251 (566)
. +.++..++++ ++++|| |||. |. .|++++|++||++..+.. +.|. +||++||||||
T Consensus 644 ~-~~ll~aD~dA~Y~~vieI--DLs~----i~-----EP~VA~P~~PDnv~pvse--v~g~-------~IdqVfIGSCT- 701 (844)
T TIGR00117 644 N-PELLEADADAEYAAVIEI--DLAE----IK-----EPILAAPNDPDDVRPLSE--VQGD-------KIDEVFIGSCM- 701 (844)
T ss_pred h-cccccCCCCCceEEEEEE--EhHh----CC-----CCeeCCCCChhhccChHh--hcCc-------ccceEEEEcCC-
Confidence 3 3444444332 679999 9983 20 245678888988753333 3443 59999999999
Q ss_pred CCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccc
Q psy5344 252 TSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVD 331 (566)
Q Consensus 252 ~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~ 331 (566)
|+++|++.||.+| ||++++| ||++|+|||++|+++|+++|++++|.++||.|..||||+|+||.+.
T Consensus 702 ~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~pGCg~C~Gn~~~------- 767 (844)
T TIGR00117 702 TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIPGCSLCMGNQAR------- 767 (844)
T ss_pred CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCccccccCCCCc-------
Confidence 8999999998887 8999988 9999999999999999999999999999999999999999999665
Q ss_pred cccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 332 AIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 332 ~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+.+|++ +|||+||||+||||+ .+.+|||||++|||+||+|+|+
T Consensus 768 -v~~Ge~---vvSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 768 -VADGAT---VFSTSTRNFPNRMGT-GANVYLGSAELAAVCALLGKIP 810 (844)
T ss_pred -CCCCCE---EEeccCCCCCCCCCC-CccEEeCCHHHHHHHHhCcccC
Confidence 367775 389999999999998 5579999999999999999996
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=1e-73 Score=638.47 Aligned_cols=326 Identities=20% Similarity=0.176 Sum_probs=268.8
Q ss_pred HHHHHhc---CCCCCccCCCCCeeEEeccCCcc-------------cccCC---------CCcchHHHHhhccc------
Q psy5344 2 RDAVKSL---NGDPQKINPICPSDLVIDHSVQV-------------DFSRS---------GVSSHGVVVTALAL------ 50 (566)
Q Consensus 2 r~~~~~~---g~dp~~inp~~p~~lviDHsv~~-------------d~~~~---------~~~~HQv~lE~la~------ 50 (566)
|+.|+++ |.||++| .+++||.+++ +|.++ +|+|||++.| ++.
T Consensus 485 ~~efkel~~~~~dpdkv------~~~fDH~ap~p~~~~~~~~~~lr~Fa~~~Gi~~~~~G~GI~HqvL~e-~~lPG~viv 557 (938)
T PLN00094 485 RDELKDLACLGFSADLV------MQSFCHTAAYPKPVDVVTHHTLPDFIRNRGGVSLRPGDGVIHSWLNR-MLLPDTVGT 557 (938)
T ss_pred HHHHHHhcccccCcccE------EEEccCCCCCCCHHHHHHHHHHHHHHHHcCCEEECCCCceecccccc-cccCCeEEE
Confidence 6788885 5577766 9999999665 23333 4569998755 776
Q ss_pred ----c----ccC----ChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHH------HHHhh------cCc
Q psy5344 51 ----H----ARD----PGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTIT------KHLRQ------LGV 106 (566)
Q Consensus 51 ----H----~GV----Gg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~------~~L~~------~G~ 106 (566)
| .|| |++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|+ +.|++ .++
T Consensus 558 GgDSHT~fa~GIsf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f 637 (938)
T PLN00094 558 GGDSHTRFPIGISFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVF 637 (938)
T ss_pred eecCCCCCcccccCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceE
Confidence 8 566 99999999999999999999999999999999999999999996 44443 345
Q ss_pred cceEEEEccCcccccCccccccccccccccCceEeeecCCh-hHHHHHhh----------cCCCc-----chhhhhhhhh
Q psy5344 107 VGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQ-NSLEYLKQ----------TSKSP-----GCTKVSRWRS 170 (566)
Q Consensus 107 ~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De-~t~~YL~~----------tgr~~-----~~~~~~~~~~ 170 (566)
+||+||| +|+++||+++|+|||||++|+||++|+||+|+ .|++||+. +|+.+ .+++..+ .
T Consensus 638 ~GkilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e--~ 713 (938)
T PLN00094 638 SGRILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQ--Q 713 (938)
T ss_pred eeEEEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHH--H
Confidence 8999999 67999999999999999999999999999995 78999986 45432 1222333 3
Q ss_pred hhhhhhcCCCCCCCC--cceeeccccCCCccccccccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEee
Q psy5344 171 GQNARLVGFKGYGLK--SQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAIT 247 (566)
Q Consensus 171 y~~ad~~~~~~y~~~--~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~Ig 247 (566)
|++. +.++..++++ +++||| |||+.. +|++++|++||++. +++ +.| .+||+||||
T Consensus 714 w~~~-~~ll~aD~dA~Y~~vieI--DLs~I~---------EP~VA~P~~PDnv~---~lsev~g-------~kIDqVFIG 771 (938)
T PLN00094 714 WLAD-PELLEADPDAEYAAVIEI--DMDEIK---------EPILCAPNDPDDAR---LLSEVTG-------DKIDEVFIG 771 (938)
T ss_pred HHhh-cccccCCCCCceEEEEEE--EhHHCC---------CCeEeCCCChhhce---ECchhcC-------CccCeEEEE
Confidence 4333 4445444432 679999 998421 23456777888764 443 344 359999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCc
Q psy5344 248 SCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDP 327 (566)
Q Consensus 248 SCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~ 327 (566)
||| ++++|++.||.+| ||+++++.||++|+|||++|+++|+++|++++|.++||.|..||||+|+||++.
T Consensus 772 SCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~PGCg~CmG~~g~--- 841 (938)
T PLN00094 772 SCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEMPGCSLCMGNQAR--- 841 (938)
T ss_pred eCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcCCccccccCCCCc---
Confidence 999 7999999999888 899999999999999999999999999999999999999999999999999665
Q ss_pred cccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 328 PIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 328 ~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
+++|++ +|||+||||+||||+ .+.+||+||++|||+|++|+|+
T Consensus 842 -----l~~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 842 -----VAEKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred -----CCCCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 367886 489999999999998 6689999999999999999997
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=2.7e-41 Score=317.47 Aligned_cols=83 Identities=67% Similarity=0.978 Sum_probs=80.4
Q ss_pred EeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhhC-CCCCCceeecCCCc
Q psy5344 483 LLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLV-SKPGPKTVHFPSLE 561 (566)
Q Consensus 483 ~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~~-~~~g~~t~~~p~~~ 561 (566)
+|||+||||||||||+|+++||||+||+++||+++||||||||||||||||||||||+||+|+|+ ++|||+|+|+|+||
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999 57999999999999
Q ss_pred cccC
Q psy5344 562 EGGQ 565 (566)
Q Consensus 562 ~~~~ 565 (566)
+|++
T Consensus 81 ~~~i 84 (171)
T cd01580 81 VMSI 84 (171)
T ss_pred EeeH
Confidence 9875
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=3.6e-34 Score=307.63 Aligned_cols=310 Identities=19% Similarity=0.237 Sum_probs=240.6
Q ss_pred CeeEEeccCCcccccCC---------CCcchHHHHhhccc----------c--------ccCChHHHHHHHhCCeEEeec
Q psy5344 20 PSDLVIDHSVQVDFSRS---------GVSSHGVVVTALAL----------H--------ARDPGIEAEAVMLGQAISLLL 72 (566)
Q Consensus 20 p~~lviDHsv~~d~~~~---------~~~~HQv~lE~la~----------H--------~GVGg~ea~~~mlg~~~~~~v 72 (566)
|+|..--|.+| +|..+ +++||.+. .++-. | |+.|+--++.+.+++.+.|.+
T Consensus 442 pvdv~th~~Lp-~Fi~~rGgVslrpgdGVIHswL-NrmllpDtvgtGGDSHTRfpiGisFpAgSGlVAfAaatGvmpldm 519 (852)
T COG1049 442 PVDVKTHHTLP-DFIMNRGGVSLRPGDGVIHSWL-NRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDM 519 (852)
T ss_pred ccchhccccch-HHHhhcCceecCCCCccHHHHH-HhccCCcceecCCcccccccccceecCCCchhhhhHhcCcccCCC
Confidence 55666667666 44433 34499987 55433 6 888999999999999999999
Q ss_pred CcEEEEEEEcccCCCCChhHHHHHHH------HHHhh-----cC-ccceEEEEccCcccccCccccccccccccccCceE
Q psy5344 73 PEVIGYKIEGKLSQYVTSTDLVLTIT------KHLRQ-----LG-VVGKFVEFFGPGVKELSIADRATISNMCPEYGATV 140 (566)
Q Consensus 73 PevvgV~L~G~L~~gVtakDliL~i~------~~L~~-----~G-~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~ 140 (566)
||+|.|+++|+++||+|-+|||..|- +.|.+ ++ ..|+++|. +|+.+|.+++-++++.-++|..|..
T Consensus 520 PeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEi--eglp~LkveQAFeltDasAErsaa~ 597 (852)
T COG1049 520 PESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAG 597 (852)
T ss_pred CceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEe--ccCcccchhhheeccchhhhhhhcc
Confidence 99999999999999999999998874 23442 22 47999999 5799999999999999999999988
Q ss_pred eeecCC-hhHHHHHhhc----------CCCcch-----hhhhhhhhhhhhhhcCCCCCCCC--cceeeccccCCCccccc
Q psy5344 141 GFFPVD-QNSLEYLKQT----------SKSPGC-----TKVSRWRSGQNARLVGFKGYGLK--SQVIEPLNQLGFDVVGF 202 (566)
Q Consensus 141 g~fp~D-e~t~~YL~~t----------gr~~~~-----~~~~~~~~y~~ad~~~~~~y~~~--~~viei~~DLs~d~v~l 202 (566)
+.+-.+ |...+||+.. |..+.+ ++..+ +|+.. +.+...+.++ ..+||| ||...+.|
T Consensus 598 ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me--~wla~-p~lle~D~dAeYaavIei--dL~~IkEP- 671 (852)
T COG1049 598 CTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKME--AWLAN-PELLEADADAEYAAVIEI--DLADIKEP- 671 (852)
T ss_pred ceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH--HhhcC-ccccCCCCCCceeEEEEe--eHHHcCCC-
Confidence 887655 5677898754 444322 11112 33333 3344433332 459999 99843322
Q ss_pred cccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCc--cCCce
Q psy5344 203 GCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLS--VAPYI 279 (566)
Q Consensus 203 ~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~k--v~p~V 279 (566)
.+++|.+||++. .++ +.+ .+||-+|||||... +-+++++|.+| +|.+ ++ .
T Consensus 672 --------ila~PNdpDd~r---~lse~~~-------~~idevFiGSCMtn-iGh~ra~~klL------~~~~~~~~--~ 724 (852)
T COG1049 672 --------ILAAPNDPDDVR---LLSEVAG-------DKIDEVFIGSCMTN-IGHFRAAGKLL------ENAKGELP--T 724 (852)
T ss_pred --------eecCCCCchHhh---HhHHhcC-------Cccceeeeehhhcc-chhHHHHHHHH------HhcccCCC--c
Confidence 235566777653 333 233 25999999999866 78999999998 4443 45 8
Q ss_pred eeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcC
Q psy5344 280 KTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTR 359 (566)
Q Consensus 280 k~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~ 359 (566)
|++|+|-++...++|.++|+..+|-++|+.+--|||+.|+||... +++|..| +||+.|||++|+|....
T Consensus 725 rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PGCsLCMGNQar--------v~dgatV---~sTSTRnF~nRlg~~a~ 793 (852)
T COG1049 725 RLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPGCSLCMGNQAR--------VADGATV---FSTSTRNFPNRLGKGAN 793 (852)
T ss_pred ceEecCCccccHHHHhhcchHHHHhhccceecCCCcccccccHhh--------hccCCEE---EeeccccCCcccccccc
Confidence 999999999999999999999999999999999999999999755 4778875 79999999999998765
Q ss_pred ceeecCHHHHHHHHHcCcc
Q psy5344 360 ANYLASPLLVIAYALAGTV 378 (566)
Q Consensus 360 ~~yLaSP~lVaA~AlaG~I 378 (566)
+||+|.+++|.+|+-|+|
T Consensus 794 -vyL~Saelaav~aiLGki 811 (852)
T COG1049 794 -VYLASAELAAVCAILGKI 811 (852)
T ss_pred -eeeeccHHHHHHHHHcCC
Confidence 899999999999999987
No 36
>KOG0454|consensus
Probab=99.74 E-value=8.8e-19 Score=184.17 Aligned_cols=136 Identities=25% Similarity=0.329 Sum_probs=114.2
Q ss_pred eeecCcc--ceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCcee-eeecCCcHHHHHHHHHcCChHHH
Q psy5344 227 FEFEGKT--YTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIK-TSLSPGSGVVTYYLRESQVIEPL 303 (566)
Q Consensus 227 v~~~g~~--~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk-~~v~PgS~~V~~~l~~~Gll~~L 303 (566)
+.|+|.+ ..+.--.+|-+|||||||++++||+.||+.+ +|.|+.-.+| ..++|||+.|...++.+||-++|
T Consensus 82 L~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if 155 (502)
T KOG0454|consen 82 LVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIF 155 (502)
T ss_pred eeeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHH
Confidence 3466653 3444456889999999999999999999766 9999986666 56999999999999999999999
Q ss_pred HhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 304 NQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 304 ~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
.++||.+...||..|.|+.-. -+..-+++ -+|+|||||||+|...+ ++|+||.+.+|.++.|+..
T Consensus 156 ~eagF~wreagcs~clgmnpd-------~l~~yerc---astsnRnfEgrqGa~sr-Thlma~s~qfAagi~~~~~ 220 (502)
T KOG0454|consen 156 NEAGFYWREAGCSFCLGMNPD-------GLCHYERC---ASTSNRNFEGRQGADSR-THLMAASMQFAAGIGGHDL 220 (502)
T ss_pred HhhceehhhccccccccCCch-------hccHHHHh---hhccCCCcccccccccc-chhhhhhHHhhcccccccc
Confidence 999999999999999998622 12444553 58999999999999887 5999999999999988754
No 37
>KOG0454|consensus
Probab=99.63 E-value=5.7e-17 Score=170.67 Aligned_cols=278 Identities=16% Similarity=0.057 Sum_probs=194.4
Q ss_pred ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEEEEccCcccccCccccccccc
Q psy5344 52 ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISN 131 (566)
Q Consensus 52 ~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaN 131 (566)
.|+|+.++....-++...+++|.++.++|.|..+.-..++|+++.++...-..+...+..||-+-.. +|+++.|+|+||
T Consensus 213 agi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~ 291 (502)
T KOG0454|consen 213 AGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCG 291 (502)
T ss_pred ccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcceeeeeh
Confidence 6999999999999899999999999999999999999999999999888888888889999987666 899999999999
Q ss_pred cccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCCCcceeeccccCCCccccccccccccCC
Q psy5344 132 MCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNS 211 (566)
Q Consensus 132 Ma~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~~~~viei~~DLs~d~v~l~~~~~~~~~ 211 (566)
|..|-+-|-+|+|.+-.|+-|-....++. +.+| |+.. +.+.| ..-+.+ |.+ ++++...+.
T Consensus 292 vv~dNiDTD~IIP~qfltli~~~~~~~~~----f~~~--~~dg---~~k~~---~~dFv~--~vE----~~~~~siii-- 351 (502)
T KOG0454|consen 292 VVADNIDTDQIIPAQFLTLIPSTGLILSC----FYEV--ALDG---LPKSF---VTDFVL--PVE----PLRKYSIII-- 351 (502)
T ss_pred hhhhhCCcCcccChhhhcccccchhhhhh----hhhh--eecC---Cchhh---ccceec--ccc----ccceeEEEe--
Confidence 99999999999999876665544333321 1111 1111 11122 111222 332 121111100
Q ss_pred CCCCCCCCCCCcccceeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHH
Q psy5344 212 GPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVT 291 (566)
Q Consensus 212 v~~~~~p~~~~~~~~v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~ 291 (566)
.. || -|....-+|-+|+..++|+|+-..-++.|++ +|+-+.-|++++ +...+.|-.+-++
T Consensus 352 ----~~-DN---------FGCGSSREHAPv~L~~~GakaivA~Sya~IF----frN~~atG~l~~--~~s~~~v~de~~~ 411 (502)
T KOG0454|consen 352 ----GG-DN---------FGCGSSREHAPVCLGAAGAKAIVAPSYARIF----FRNSVATGELPP--LPSEVRVCDECVT 411 (502)
T ss_pred ----cc-CC---------cccccccccCcchhhhcccceecchhHHHHH----HHhHHhcCCccC--CCceeeeccccee
Confidence 01 11 0122334466789999999999998886555 466677899876 2233444333222
Q ss_pred H-----HHHHc---CChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceee
Q psy5344 292 Y-----YLRES---QVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYL 363 (566)
Q Consensus 292 ~-----~l~~~---Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yL 363 (566)
. .+-.+ -++.+++..+..=+.|-|..|.++.. +.+....++.. .|+|+||||++|||.+..++||
T Consensus 412 ~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~a---d~I~~~~~ke~----mIss~~a~r~e~~~~~eg~~~l 484 (502)
T KOG0454|consen 412 GDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDA---DGIFAYARKEG----MISSTEANRPERMGHKEGQIYL 484 (502)
T ss_pred cceeeEEcccCCcceeeeeecccceeecCcccccCcccCc---hHHHHhhcccc----ccchhhhcCccccCccccceEE
Confidence 1 11121 24667778888777899999999752 12322223322 3899999999999999999999
Q ss_pred cCHHHHHHHHHcCc
Q psy5344 364 ASPLLVIAYALAGT 377 (566)
Q Consensus 364 aSP~lVaA~AlaG~ 377 (566)
|||.+|+|+++.|+
T Consensus 485 a~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 485 ASPYTVAASKLTGR 498 (502)
T ss_pred ccccchhhhhhcCC
Confidence 99999999999998
No 38
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=97.92 E-value=5.2e-07 Score=83.58 Aligned_cols=58 Identities=38% Similarity=0.358 Sum_probs=53.8
Q ss_pred HHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhhCC-CCCCceeecCCCcccc
Q psy5344 507 KFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVS-KPGPKTVHFPSLEEGG 564 (566)
Q Consensus 507 ~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~~~-~~g~~t~~~p~~~~~~ 564 (566)
+||..+|+...+||||++||+||++|.||||+|.++.|.|.+ ..++.+.+.|+++.++
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~ 61 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPD 61 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEET
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCc
Confidence 478889999999999999999999999999999999999995 7999999999988764
No 39
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=97.80 E-value=8e-06 Score=77.00 Aligned_cols=56 Identities=25% Similarity=0.223 Sum_probs=34.9
Q ss_pred EeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhhCCCCCCceeecCCCcc
Q psy5344 483 LLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLEE 562 (566)
Q Consensus 483 ~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~~~~~g~~t~~~p~~~~ 562 (566)
|+.++||||||||||+|.+ -|||-+=..+-+|.. ..|...+ +=+..++.++|+.
T Consensus 1 k~~g~~tTDhI~pag~~l~-----------------------~R~~l~~is~~~~~~--a~n~~~~-~~~~~~~~~~g~~ 54 (149)
T cd01578 1 KAKGKCTTDHISAAGPWLK-----------------------YRGHLDNISNNLLIG--AINAENG-KANSVKNQVTGEY 54 (149)
T ss_pred CCCCccCcccccCCCcccc-----------------------cccCHHHHHHHHhhh--hhhhhcc-ccccccccCCCcc
Confidence 5689999999999999932 256665555555532 2344433 3344566666665
Q ss_pred cc
Q psy5344 563 GG 564 (566)
Q Consensus 563 ~~ 564 (566)
++
T Consensus 55 ~~ 56 (149)
T cd01578 55 GP 56 (149)
T ss_pred cc
Confidence 53
No 40
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=96.44 E-value=0.0068 Score=66.03 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=61.5
Q ss_pred cceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCc
Q psy5344 238 HGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGC 315 (566)
Q Consensus 238 ~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gC 315 (566)
+.++|.++|| |=--|++.++..|.+| +|+++++.++++|.= |+.|+..+.+.|+.+.|+++|+.|+.-.|
T Consensus 287 ~~~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~t-~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 287 DEKVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWITT-SRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEEC-CHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 3468888887 7888899999999888 899999999987775 88999999999999999999999997665
No 41
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=94.41 E-value=0.016 Score=53.21 Aligned_cols=30 Identities=37% Similarity=0.712 Sum_probs=23.0
Q ss_pred EeCCCccccccccCCC-CCC--CCH--HHHHHHhC
Q psy5344 483 LLGDSVTTDHISPAGS-IAR--TSA--AAKFLASK 512 (566)
Q Consensus 483 ~~gD~iTTDHISPAG~-i~~--~s~--ag~yL~~~ 512 (566)
++||+|+||||+|++. +.. +++ .++|+.+.
T Consensus 1 ~~gdnidTD~IiP~~~~~~~~~~~~~~l~~~~f~~ 35 (121)
T cd01579 1 KVGDNITTDHIMPAGAKVLPLRSNIPAISEFVFHR 35 (121)
T ss_pred CCCCcCChhhcCCCCccccccCCCHHHHHHhhccC
Confidence 5899999999999984 543 343 77887764
No 42
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=94.14 E-value=0.018 Score=50.16 Aligned_cols=50 Identities=34% Similarity=0.345 Sum_probs=33.1
Q ss_pred EeCCCccccccccCCCCC--------CC---CHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhhC
Q psy5344 483 LLGDSVTTDHISPAGSIA--------RT---SAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLV 547 (566)
Q Consensus 483 ~~gD~iTTDHISPAG~i~--------~~---s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~~ 547 (566)
+++|++||||||||+..- .. --|..-|+..|++ +.+=..|+-+-.+|.+-
T Consensus 1 ~~~~~~~td~~~p~~~~iiVaG~nfG~GSSRE~A~~al~~~Gi~---------------aVia~sfa~If~rN~~n 61 (88)
T cd00404 1 KVAGNITTDHISPAGPGVVIGDENYGTGSSREHAALELRLLGGR---------------AVIAKSFARIFFRNLVD 61 (88)
T ss_pred CcccccccccccCCCCEEEEecCCeecCCCHHHHHHHHHHhCCC---------------EEEEeCHHHHHHhhHHh
Confidence 479999999999998321 00 0123345555555 55666788888888764
No 43
>COG1679 Predicted aconitase [General function prediction only]
Probab=94.08 E-value=0.11 Score=55.80 Aligned_cols=69 Identities=25% Similarity=0.285 Sum_probs=57.4
Q ss_pred ceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCc
Q psy5344 239 GSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGC 315 (566)
Q Consensus 239 g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gC 315 (566)
+.+|.++|| |---|.+.++..|.+| +|++-++.+.++|+ -|++|+.++.+.|+++.|+++|..++.-.|
T Consensus 288 ~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 288 GEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 346777887 6777888888888777 88887777877666 489999999999999999999999997554
No 44
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=92.60 E-value=0.24 Score=53.99 Aligned_cols=70 Identities=24% Similarity=0.353 Sum_probs=57.1
Q ss_pred eEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccc
Q psy5344 240 SVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCI 319 (566)
Q Consensus 240 ~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~Ci 319 (566)
++|.++| .|=--|.+.++.-|.+| +|+++++.++++|. -|+.|+ +.+.|+.+.|+++|+.++.-.|. |+
T Consensus 278 ~~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v 346 (389)
T cd01355 278 EPDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VV 346 (389)
T ss_pred CCCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-ee
Confidence 4788888 57888889999888888 89877777776665 467777 89999999999999999997776 65
Q ss_pred c
Q psy5344 320 G 320 (566)
Q Consensus 320 G 320 (566)
-
T Consensus 347 ~ 347 (389)
T cd01355 347 S 347 (389)
T ss_pred e
Confidence 3
No 45
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=88.71 E-value=0.21 Score=48.01 Aligned_cols=16 Identities=50% Similarity=0.642 Sum_probs=14.4
Q ss_pred EEEeCCCccccccccC
Q psy5344 481 LLLLGDSVTTDHISPA 496 (566)
Q Consensus 481 L~~~gD~iTTDHISPA 496 (566)
+.++||+|.||||.|+
T Consensus 3 v~~~gdnIdTD~I~P~ 18 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA 18 (156)
T ss_pred eEEcCCCccHhhccHH
Confidence 4679999999999997
No 46
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=85.39 E-value=0.55 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.6
Q ss_pred CceEEEEeCCCccccccccCCCC
Q psy5344 477 QARVLLLLGDSVTTDHISPAGSI 499 (566)
Q Consensus 477 ~arvL~~~gD~iTTDHISPAG~i 499 (566)
..+| .|+||+|+|||||||+.-
T Consensus 167 ~g~V-~KvgdnInTD~I~Pa~~~ 188 (835)
T PRK09238 167 TVTV-FKVTGETNTDDLSPAPDA 188 (835)
T ss_pred EEEE-EEeCCCCchhccCCcccc
Confidence 4777 899999999999999975
No 47
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=83.88 E-value=0.47 Score=45.84 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEeCCCccccccccCCCCC-C--CCHHHHHHHh
Q psy5344 481 LLLLGDSVTTDHISPAGSIA-R--TSAAAKFLAS 511 (566)
Q Consensus 481 L~~~gD~iTTDHISPAG~i~-~--~s~ag~yL~~ 511 (566)
+.|+||+|.||||.|+ ... . -.-.++|+.+
T Consensus 4 v~~~gdnIdTD~I~P~-~~l~~~~~~~l~~~~f~ 36 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA-RYLNTSDPQELAKHCME 36 (163)
T ss_pred EEEeCCCCchhhCChH-HHhCCCCHHHHHHHHhc
Confidence 4689999999999997 333 2 2345666655
No 48
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=80.82 E-value=0.72 Score=47.36 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=27.6
Q ss_pred CceEEEEeCCCccccccccCCCCCC-------CCHHHHHHHhCCCCCC
Q psy5344 477 QARVLLLLGDSVTTDHISPAGSIAR-------TSAAAKFLASKGLSPP 517 (566)
Q Consensus 477 ~arvL~~~gD~iTTDHISPAG~i~~-------~s~ag~yL~~~g~~~~ 517 (566)
..|| .|+||+|.||||.|+.-... ..-.|+|+.+ ++.+.
T Consensus 70 ~Grv-~k~gDNIdTD~IiPa~~l~~~~sn~~~~~~l~~~~F~-~l~~~ 115 (246)
T PLN00072 70 HGLC-FVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALI-GLPAF 115 (246)
T ss_pred EEeE-EEeCCCcchhhcccHHHhccccccCCCHHHHHHhhhc-cCCcc
Confidence 4677 58999999999999987643 1356777765 34433
No 49
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=79.78 E-value=0.88 Score=42.57 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=22.3
Q ss_pred EEeCCCccccccccCCCCCCCCHHHHHHHh
Q psy5344 482 LLLGDSVTTDHISPAGSIARTSAAAKFLAS 511 (566)
Q Consensus 482 ~~~gD~iTTDHISPAG~i~~~s~ag~yL~~ 511 (566)
+|+||+|.||+|+|+.-....+...++..+
T Consensus 1 ~~~gddIdTD~i~P~~y~~~~~~~~~ha~~ 30 (131)
T cd01576 1 FKVPGETNTDDLSPAPDAWSRPDIPLHALA 30 (131)
T ss_pred CcCCCCCchhcccChhhcCCcchHHHHHhc
Confidence 378999999999999876555555555333
No 50
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=77.54 E-value=0.91 Score=43.52 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=14.0
Q ss_pred EEeCCCccccccccC
Q psy5344 482 LLLGDSVTTDHISPA 496 (566)
Q Consensus 482 ~~~gD~iTTDHISPA 496 (566)
.++||+|.||||.|+
T Consensus 4 ~~~gdnIdTD~IiP~ 18 (154)
T TIGR02087 4 WKFGDDIDTDEIIPG 18 (154)
T ss_pred EEcCCCcchhhCcHH
Confidence 679999999999997
No 51
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=77.02 E-value=1 Score=43.72 Aligned_cols=16 Identities=38% Similarity=0.717 Sum_probs=14.5
Q ss_pred EEEeCCCccccccccC
Q psy5344 481 LLLLGDSVTTDHISPA 496 (566)
Q Consensus 481 L~~~gD~iTTDHISPA 496 (566)
..|+||+|.||||.|+
T Consensus 4 v~~~gdnIdTD~IiPa 19 (166)
T PRK14023 4 VWKFGDNINTDDILPG 19 (166)
T ss_pred eEEcCCCcchhhcchH
Confidence 3679999999999998
No 52
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=44.63 E-value=12 Score=44.76 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.6
Q ss_pred ceEEEEeCCCccccccccCCCC-CCCCH--HHHHHHh
Q psy5344 478 ARVLLLLGDSVTTDHISPAGSI-ARTSA--AAKFLAS 511 (566)
Q Consensus 478 arvL~~~gD~iTTDHISPAG~i-~~~s~--ag~yL~~ 511 (566)
.+|. |+||+|.||+|||+--. .+..+ .++++.+
T Consensus 169 g~V~-k~gddinTD~i~Pa~~a~sr~D~~~~a~~m~~ 204 (844)
T TIGR00117 169 VTVF-KVTGETNTDDLSPAPDAWTRPDIPLHALAMLK 204 (844)
T ss_pred EEEE-EeCCCCchhccCChhhhhcCCCHHHHHHHHhh
Confidence 5665 89999999999999764 33444 4555554
No 53
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=42.54 E-value=7.9 Score=34.12 Aligned_cols=49 Identities=35% Similarity=0.556 Sum_probs=30.5
Q ss_pred EeCCCccccccccC---CCCC----------CCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhh
Q psy5344 483 LLGDSVTTDHISPA---GSIA----------RTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKL 546 (566)
Q Consensus 483 ~~gD~iTTDHISPA---G~i~----------~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~ 546 (566)
++||+|-||||.|+ |.|- .---|.+-|+..|++ ..+=-.|+-+--+|.+
T Consensus 1 ~~gd~idTD~i~p~~~~~~ilVaG~nfG~GSSRE~A~~al~~~Gi~---------------avia~sFa~If~~N~~ 62 (91)
T cd01577 1 LFGDNIDTDQIIPARFLGDIIVAGKNFGCGSSREHAPWALKDAGIR---------------AVIAESFARIFFRNAI 62 (91)
T ss_pred CCCCccchhhcchHHHcCCEEEecCcccCCCcHHHHHHHHHHhCCC---------------EEEEchHHHHHHhhHh
Confidence 57999999999996 3332 111233347777776 4444556666666664
No 54
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=38.95 E-value=19 Score=33.76 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=20.1
Q ss_pred CCCccccccccCCCCCCC--C--HHHHHHHh
Q psy5344 485 GDSVTTDHISPAGSIART--S--AAAKFLAS 511 (566)
Q Consensus 485 gD~iTTDHISPAG~i~~~--s--~ag~yL~~ 511 (566)
-|+|.||||.|+.-.... + -.++|..+
T Consensus 3 ~DnInTD~IiP~~y~~~~~~~~e~la~~~~e 33 (129)
T cd01674 3 ADNLNTDGIYPGKYTYQDDITPEKMAEVCME 33 (129)
T ss_pred ccccchhccCcccccccCCCCHHHHHHhhcc
Confidence 489999999998876422 2 56777766
No 55
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=37.27 E-value=19 Score=33.68 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=22.3
Q ss_pred CCCCccccccc---cCCceEEEeeecccCCCc
Q psy5344 323 GPLDPPIVDAI---EKNELVVAGVLSGNRNFE 351 (566)
Q Consensus 323 g~l~~~v~~~i---~~g~~~~~~VsS~NRNF~ 351 (566)
|.+|+.+.+-+ .+.+.+.+.+.||||||-
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~g 87 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNFG 87 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchHH
Confidence 56788777766 455677778999999993
No 56
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=35.74 E-value=47 Score=30.92 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=26.4
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 242 VIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 242 ~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
.+++||+|..|=-- --.||.-|-++|.+.|..||
T Consensus 3 ~IVAVTACPtGIAH-TyMAAeaLe~~A~~~g~~IK 36 (122)
T COG1445 3 KIVAVTACPTGIAH-TYMAAEALEKAAKKLGVEIK 36 (122)
T ss_pred cEEEEecCCchHHH-HHHHHHHHHHHHHHcCCeEE
Confidence 46799999999544 45556777888888898887
No 57
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=33.84 E-value=34 Score=29.49 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=25.7
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 245 AITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 245 ~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
+|+||..|.-.. .+||..|.++|-..|.+++
T Consensus 2 ~vtacp~G~Aht-~lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHT-FMAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 689999997655 5667888899999999887
No 58
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=33.83 E-value=35 Score=34.21 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=24.5
Q ss_pred ceEEEEeCCCccccccccCCCCCC--CCHHHHHHHh
Q psy5344 478 ARVLLLLGDSVTTDHISPAGSIAR--TSAAAKFLAS 511 (566)
Q Consensus 478 arvL~~~gD~iTTDHISPAG~i~~--~s~ag~yL~~ 511 (566)
.+++...||+|.||+|.|+--... ..-.|+|+.+
T Consensus 9 G~~~~l~~dnIDTD~IiPa~fl~~~~~~~l~~~~f~ 44 (200)
T PRK01641 9 GLAVPLDRANVDTDQIIPKQFLKRITRTGFGKGLFD 44 (200)
T ss_pred EEEEEcCCCCCChhhcchHhHcCcCCHHHHHHhhhc
Confidence 466666699999999999865432 2456667665
No 59
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=32.77 E-value=24 Score=33.48 Aligned_cols=42 Identities=33% Similarity=0.525 Sum_probs=31.0
Q ss_pred cCCCCCCcccccccc---CCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccc
Q psy5344 320 GNSGPLDPPIVDAIE---KNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVD 379 (566)
Q Consensus 320 G~~g~l~~~v~~~i~---~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 379 (566)
|..|.+|..+.+-+. +..++--.|.||||||- .++|+||.+-
T Consensus 54 ~~~~~Vp~~vi~FLn~~~Nr~~~rGViaSGN~NfG------------------~~f~~Ag~~i 98 (141)
T COG1780 54 GTVGAVPKQVIRFLNNEHNRALCRGVIASGNRNFG------------------DNFALAGDVI 98 (141)
T ss_pred CccCccCHHHHHHhccccchhheEEEEecCCccHH------------------HHHHHHHHHH
Confidence 677888988888884 44455556899999994 2678888764
No 60
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=32.15 E-value=16 Score=33.72 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=24.1
Q ss_pred CeEecCCccccccCCCCCCcccccccc---CCceEEEeeecccCCC
Q psy5344 308 FDVVGFGCMTCIGNSGPLDPPIVDAIE---KNELVVAGVLSGNRNF 350 (566)
Q Consensus 308 ~~v~~~gCg~CiG~~g~l~~~v~~~i~---~g~~~~~~VsS~NRNF 350 (566)
|.++.|.=+..-+ .+.+|+.+.+-+. +.+.+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 3444443333332 3347888888887 5555555689999999
No 61
>COG0831 UreA Urea amidohydrolase (urease) gamma subunit [Amino acid transport and metabolism]
Probab=28.65 E-value=42 Score=29.84 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCccC-CceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecC
Q psy5344 259 LGAGLLAKKAVEAGLSVA-PYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGF 313 (566)
Q Consensus 259 ~aA~llak~Av~~G~kv~-p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~ 313 (566)
-.|+.||++...||+|.+ |.. ++-=|-.|.+.+.+--....|.+.|.+++..
T Consensus 14 ~~a~~lA~rR~~RGlKLNypEA---vAlIs~~i~EgaRdGktVaelM~~g~~vL~~ 66 (100)
T COG0831 14 FTAAELARRRKARGLKLNYPEA---VALISAFILEGARDGKTVAELMSEGRHVLTR 66 (100)
T ss_pred HHHHHHHHHHHhcCcccCcHHH---HHHHHHHHHHhhhcCCcHHHHHHhhhhhCCH
Confidence 357899999999999986 432 3444677888887777789999999998864
No 62
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=28.28 E-value=48 Score=36.88 Aligned_cols=102 Identities=20% Similarity=0.348 Sum_probs=51.6
Q ss_pred ceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCC--ccCCceeeeecCCcHHHHHHHHHcCChHHHHhCC--Ce
Q psy5344 234 YTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGL--SVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLG--FD 309 (566)
Q Consensus 234 ~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~--kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG--~~ 309 (566)
+...||- |=.+++|- .++.+.=-..| |+...+|+ +++|+.=..+-=|+.+....-.-.-+.+.|.+.| +.
T Consensus 267 ~~~~HgG----YD~~~~n~-Dpn~v~PlD~L-reLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAV 340 (431)
T TIGR01918 267 YETAHGG----FDPAYANA-DPDRVVPVDVL-RDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAV 340 (431)
T ss_pred eEEeccc----cChHHHhc-CCCeeeeHHHH-HHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEE
Confidence 4555543 33444443 34433322333 33334565 6777653333334444333323344778888766 67
Q ss_pred EecCCccccccCCCCCCccccccccCCceEEEeeec
Q psy5344 310 VVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLS 345 (566)
Q Consensus 310 v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS 345 (566)
|+.++||+|-= ++.+ +.+.|+...+-++-+.+
T Consensus 341 ILTstCgtC~r-~~a~---m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 341 ILTSTUGTCTR-CGAT---MVKEIERAGIPVVHMCT 372 (431)
T ss_pred EEcCCCCcchh-HHHH---HHHHHHHcCCCEEEEee
Confidence 88999999963 2221 33445555553334444
No 63
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.21 E-value=71 Score=35.64 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=45.7
Q ss_pred cceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCC--ccCCceeeeecCCcHHHHHHHHHcCChHHHHhCC--C
Q psy5344 233 TYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGL--SVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLG--F 308 (566)
Q Consensus 233 ~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~--kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG--~ 308 (566)
.+.+.||--|-++.-- .++.+.=-..| |+...+|+ +++|+.=..+-=|+.+....-...-+.+.|.+.| +
T Consensus 266 ~~~~~HgGYD~~~~n~-----Dpn~v~PlD~L-reLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDA 339 (431)
T TIGR01917 266 DHETAHGGHDPTYANE-----DADRVIPVDVL-RDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDA 339 (431)
T ss_pred ceEEeccccChHHHhc-----CCCeeeeHHHH-HHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCE
Confidence 3556666555544322 22322222222 33344675 6777764445455544433333444888888877 6
Q ss_pred eEecCCccccc
Q psy5344 309 DVVGFGCMTCI 319 (566)
Q Consensus 309 ~v~~~gCg~Ci 319 (566)
.|+.++||+|-
T Consensus 340 vILtstCgtCt 350 (431)
T TIGR01917 340 VILTSTUGTCT 350 (431)
T ss_pred EEEcCCCCcch
Confidence 68899999996
No 64
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=22.59 E-value=81 Score=31.55 Aligned_cols=75 Identities=27% Similarity=0.231 Sum_probs=44.3
Q ss_pred CceeeeecCC--cHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCc
Q psy5344 277 PYIKTSLSPG--SGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRI 354 (566)
Q Consensus 277 p~Vk~~v~Pg--S~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~ 354 (566)
+.+.-.|.|| |..+.+-+.+.|+++.|.+.=.. --|-=|||-|+- -|..++.+.-...-+-+ -=-+-+||.-||+
T Consensus 37 ~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~~~~~~Lg~-mdi~V~RNAfGRQ 113 (194)
T COG0311 37 EGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDGPEQPLLGL-LDVTVRRNAFGRQ 113 (194)
T ss_pred ccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHc-CCceEEechhhh-hhhhhhcCCCCCcccce-EEEEEEccccccc
Confidence 4567789999 66777888999999988864322 234456898863 12222211000011100 0136789999998
No 65
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=22.05 E-value=93 Score=28.38 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=27.2
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 243 IAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 243 ~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
+.+|++|..|.-.- .+||..|.++|-..|.+++
T Consensus 5 ivaVtacp~GiAht-~lAAeaL~kAA~~~G~~i~ 37 (114)
T PRK10427 5 LVAVTACVSGVAHT-YMAAERLEKLCQLEKWGVK 37 (114)
T ss_pred EEEEeeCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 57899999997555 5667888888889999887
No 66
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=21.07 E-value=1.2e+02 Score=32.70 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=28.1
Q ss_pred ecCCc---HHHHHHHHHcCChHHHHhCCC-----------eEecCCccccccC
Q psy5344 283 LSPGS---GVVTYYLRESQVIEPLNQLGF-----------DVVGFGCMTCIGN 321 (566)
Q Consensus 283 v~PgS---~~V~~~l~~~Gll~~L~~aG~-----------~v~~~gCg~CiG~ 321 (566)
+.||| .+|.+.|...||++...+.|- -...-|||.-||-
T Consensus 137 ~~ags~~a~evka~li~~glwsqylevgigpdaEIFtKaqpmssVG~Ga~Igv 189 (379)
T COG3970 137 LEAGSDYAAEVKAKLIAKGLWSQYLEVGIGPDAEIFTKAQPMSSVGHGAQIGV 189 (379)
T ss_pred ccCCChhHHHHHHHHHhhhHHHHHhhhhcCCChhheecCCccccccccceeee
Confidence 44554 567888899999988888885 2345678887874
Done!