Query psy5344
Match_columns 566
No_of_seqs 291 out of 2057
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 00:12:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 1E-165 3E-170 1401.6 35.8 548 1-564 99-750 (888)
2 1c96_A Mitochondrial aconitase 100.0 2E-117 6E-122 997.5 34.5 466 5-564 82-614 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 4.5E-76 1.5E-80 665.4 27.6 346 1-419 421-837 (865)
4 1l5j_A Aconitate hydratase 2; 99.1 4.1E-13 1.4E-17 153.0 -10.4 141 349-511 48-203 (865)
5 2hcu_A 3-isopropylmalate dehyd 98.2 2.1E-07 7.2E-12 91.2 1.1 74 458-558 5-81 (213)
6 1v7l_A 3-isopropylmalate dehyd 93.4 0.037 1.3E-06 52.0 3.0 26 481-506 7-32 (163)
7 2pkp_A Homoaconitase small sub 91.5 0.067 2.3E-06 50.6 2.0 30 481-512 7-36 (170)
8 3vba_A Isopropylmalate/citrama 82.9 0.38 1.3E-05 45.7 1.3 29 477-506 6-34 (176)
9 3h5j_A 3-isopropylmalate dehyd 69.6 1.2 4.3E-05 42.0 0.8 25 476-500 10-34 (171)
10 2r48_A Phosphotransferase syst 48.8 15 0.00052 31.9 4.0 34 242-276 4-37 (106)
11 2r4q_A Phosphotransferase syst 46.6 14 0.00047 32.2 3.3 33 243-276 5-37 (106)
12 2kyr_A Fructose-like phosphotr 35.8 25 0.00084 30.8 3.2 34 242-276 7-40 (111)
13 2m1z_A LMO0427 protein; homolo 33.9 29 0.00098 30.1 3.3 34 242-276 4-37 (106)
14 3q3w_A 3-isopropylmalate dehyd 27.0 18 0.0006 35.0 0.9 21 477-497 11-31 (203)
15 1usm_A DCOH, hepatocyte nuclea 22.0 1.4E+02 0.0049 24.0 5.4 40 58-97 33-72 (80)
16 3jst_A Putative pterin-4-alpha 20.3 1.4E+02 0.0048 25.0 5.1 39 58-96 51-89 (97)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=1e-165 Score=1401.63 Aligned_cols=548 Identities=64% Similarity=1.004 Sum_probs=511.7
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCC--------------------------------------CcchH
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSG--------------------------------------VSSHG 42 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~--------------------------------------~~~HQ 42 (566)
||++++++|.||+||||.+|++++|||++|++..+.. ++|||
T Consensus 99 mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~~~~f~~~~~~~pG~GI~Hq 178 (888)
T 2b3y_A 99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQ 178 (888)
T ss_dssp HHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECTTSCCHHH
T ss_pred HHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHHHHHhccCCCCCCCCCCCcce
Confidence 7899999999999999999999999999999765533 33999
Q ss_pred HHHhhccc-------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhH
Q psy5344 43 VVVTALAL-------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD 92 (566)
Q Consensus 43 v~lE~la~-------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakD 92 (566)
||+||||+ | |||||+|+|++|+||++||++||+|+|+|+|+|++||||||
T Consensus 179 v~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakD 258 (888)
T 2b3y_A 179 VNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD 258 (888)
T ss_dssp HHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHH
T ss_pred ehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhH
Confidence 99998654 6 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhh
Q psy5344 93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQ 172 (566)
Q Consensus 93 liL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~ 172 (566)
|||+|+++||++|++||||||+|||+++||+++|||||||++|+|||+|+||+|++|++||+.|||+++.+++++ +|.
T Consensus 259 viL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e--~y~ 336 (888)
T 2b3y_A 259 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIK--KYL 336 (888)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHH--HHH
T ss_pred HHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987777777 888
Q ss_pred hhhhcCCCCC----CC--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccc--------------------
Q psy5344 173 NARLVGFKGY----GL--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQ-------------------- 226 (566)
Q Consensus 173 ~ad~~~~~~y----~~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~-------------------- 226 (566)
++ +++|+++ ++ +++++|| |||. | .|++++|.+|+++..+..
T Consensus 337 ~a-~~l~~~l~~d~~dA~Yd~~iei--DLs~----l------eP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~ 403 (888)
T 2b3y_A 337 QA-VGMFRDFNDPSQDPDFTQVVEL--DLKT----V------VPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQV 403 (888)
T ss_dssp HH-HTCCCCTTCGGGCCCCSEEEEE--EGGG----C------CSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCC
T ss_pred HH-HHHHhccCCCCCCCceEEEEEE--Ehhh----e------eEeecCCCCcccccChHHhhhhHHHhhhcccccccccc
Confidence 98 8899762 22 2679999 9982 2 344566777776433221
Q ss_pred ----------eeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHH
Q psy5344 227 ----------FEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRE 296 (566)
Q Consensus 227 ----------v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~ 296 (566)
+.++|++.+|+||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||++
T Consensus 404 ~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~ 483 (888)
T 2b3y_A 404 APEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQE 483 (888)
T ss_dssp CGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHH
T ss_pred cchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHH
Confidence 2344555689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcC
Q psy5344 297 SQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAG 376 (566)
Q Consensus 297 ~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG 376 (566)
+||+++|+++||+|++||||+||||++++++++++.|.+||+++++|||+||||+||||+..+++|||||+|||||||+|
T Consensus 484 ~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AiaG 563 (888)
T 2b3y_A 484 SGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAG 563 (888)
T ss_dssp TSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHC
T ss_pred cCcHHHHHHcCCEEeCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHHHHhcC
Confidence 99999999999999999999999999999998888999999988899999999999999999999999999999999999
Q ss_pred ccccCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCC
Q psy5344 377 TVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIK 456 (566)
Q Consensus 377 ~I~~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~ 456 (566)
+|++|+++||||.++||++|||+||||+.+|+++++.+.+++++|.+.|.+++++++.|+.+++|++.+|+||++||||+
T Consensus 564 ~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~St~i~ 643 (888)
T 2b3y_A 564 TIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIK 643 (888)
T ss_dssp BSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTTCSSCC
T ss_pred eeecccccCccccCCCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccc
Q psy5344 457 RPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGT 536 (566)
Q Consensus 457 ~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgt 536 (566)
+||||++|+..+.+ ++++.++|+|+++|||||||||||||+|+++||||+||+++||+++|||||||||||||||||||
T Consensus 644 ~~p~f~~~~~~~~~-~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm~rg~ 722 (888)
T 2b3y_A 644 SPPFFENLTLDLQP-PKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGT 722 (888)
T ss_dssp CCGGGTTCCSSCCC-CCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHHHHTT
T ss_pred CCCCccccccCCCC-cccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHHhhhc
Confidence 99999999888766 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhCCCCCCceeecCCCcccc
Q psy5344 537 FANIRIVNKLVSKPGPKTVHFPSLEEGG 564 (566)
Q Consensus 537 f~n~r~~n~~~~~~g~~t~~~p~~~~~~ 564 (566)
|+|+|++|+|++++||+|+|+|+|+.|+
T Consensus 723 F~n~r~~n~l~~~~g~~t~~~p~g~~~~ 750 (888)
T 2b3y_A 723 FANIRLLNRFLNKQAPQTIHLPSGEILD 750 (888)
T ss_dssp TCCTTCEETTTTEECSEEEETTTTEEEE
T ss_pred ccccccccccccccCCceeecCCCcccc
Confidence 9999999999999999999999999875
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=1.8e-117 Score=997.49 Aligned_cols=466 Identities=28% Similarity=0.368 Sum_probs=389.9
Q ss_pred HHhcCCCCCccCCCCCeeEEeccCCcccccCC--------------------------------CCcchHHHHhhccc--
Q psy5344 5 VKSLNGDPQKINPICPSDLVIDHSVQVDFSRS--------------------------------GVSSHGVVVTALAL-- 50 (566)
Q Consensus 5 ~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~--------------------------------~~~~HQv~lE~la~-- 50 (566)
++.+|.++ |.+|.++++||++|+++.+. .++|||||+|+++.
T Consensus 82 l~~~G~~~----v~~P~~~~~DH~v~~~~~~~~d~~~~~~~n~e~~~~l~~~a~~~gi~~~~pg~GI~Hqv~~E~~~~Pg 157 (753)
T 1c96_A 82 FISSGLPK----VAVPSTIHCDHLIEAQLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPG 157 (753)
T ss_dssp HHHHTCSS----CSSCEEEECCSSCCBSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTCEEECTTSBCHHHHHHHHTCCTT
T ss_pred HHHhCCCC----CCCCCceecCCCCCCCCCcccchhhhhhhHHHHHHHHHHHHHHCCCEEECCCCCeeCeEecccccCCC
Confidence 45678776 56688999999999874321 24499999999998
Q ss_pred --------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhhcCccceEE
Q psy5344 51 --------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFV 111 (566)
Q Consensus 51 --------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~v 111 (566)
| |||||+|++++|+||+|+|++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|
T Consensus 158 ~~ivGtDSHT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~v 237 (753)
T 1c96_A 158 VLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIV 237 (753)
T ss_dssp CEEEESSTTGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEE
T ss_pred cEEecCCCCCCccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEE
Confidence 6 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCCCCC--Cccee
Q psy5344 112 EFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGL--KSQVI 189 (566)
Q Consensus 112 Ef~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~~ad~~~~~~y~~--~~~vi 189 (566)
||+||||++||+++|||||||++|+|||+|+||+|++|++||+.++|++ ..++.+ +|.+. |+.+++ +++++
T Consensus 238 Ef~G~gv~~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~--~y~~~----l~~D~~A~Yd~~i 310 (753)
T 1c96_A 238 EYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLAD--EFKDH----LVPDPGCHYDQVI 310 (753)
T ss_dssp EEESGGGGGSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHH--HTGGG----SSCCTTCCCSEEE
T ss_pred EEECCccccCCcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHH--HHHhh----ccCCCCCceeEEE
Confidence 9999999999999999999999999999999999999999999999877 333333 34222 222222 27799
Q ss_pred eccccCCCccccccccccccCCCCCCCCCCCCCcccceeecCc----cceeccceEEEEEeecCCCCCChHHHHHHHHHH
Q psy5344 190 EPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGK----TYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLA 265 (566)
Q Consensus 190 ei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~~~g~----~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla 265 (566)
+| |||. | .|++++|.+|+++..+..+ .+. ..++ +|++|||||||||||||++ +|++++
T Consensus 311 ei--Dls~----l------eP~va~P~~P~~~~~v~e~--~~~~~~~~~~~---~Vd~~~IGSCTN~~~~Dl~-~AA~il 372 (753)
T 1c96_A 311 EI--NLSE----L------KPHINGPFTPDLAHPVAEV--GSVAEKEGWPL---DIRVGLIGSCTNSSYEDMG-RSAAVA 372 (753)
T ss_dssp EE--EGGG----C------CCEEECSSSTTCEEEHHHH--HHHHHHHTCCC---BEEEEEEBTTTBCSHHHHH-HHHHHH
T ss_pred EE--Eccc----c------ceeecCCCCCcceeEhHHh--hhhHhhcCCcc---ceEEEEEecCCCCCHHHHH-HHHHHh
Confidence 99 9982 2 3456788899886533322 111 0111 6999999999999999954 555777
Q ss_pred HHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeec
Q psy5344 266 KKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLS 345 (566)
Q Consensus 266 k~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS 345 (566)
|+|+++|+ ++.||++|+|||++|++||+++||+++|++|||+|++||||+||||+++.. +..++.. ++|||
T Consensus 373 kga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~------~~~~~~~-~~vsT 443 (753)
T 1c96_A 373 KQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD------IKKGEKN-TIVTS 443 (753)
T ss_dssp HHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS------SCTTCCE-EEEES
T ss_pred ccHhhcCC--CCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCCceeeecCCCCcc------cccCCcc-eEEec
Confidence 88888765 455999999999999999999999999999999999999999999997621 1233322 36999
Q ss_pred ccCCCcCCcC-CCcCceeecCHHHHHHHHHcCccccCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhh
Q psy5344 346 GNRNFEGRIH-PNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREV 424 (566)
Q Consensus 346 ~NRNF~GR~g-~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~ 424 (566)
+||||+|||| ++.+.+|||||++||||||+|+|++|+.+||| .++||++|||+| |+.+|+++ .+|.
T Consensus 444 ~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~--------~~f~-- 510 (753)
T 1c96_A 444 YNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR--------AEFD-- 510 (753)
T ss_dssp SSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------SCCC--
T ss_pred ccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCCCCeeeecC--Cccchhhh--------hhcc--
Confidence 9999999994 55678999999999999999999999999999 899999999999 99888754 2232
Q ss_pred hccccCCCCccccccCCC-CCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCCCCCC
Q psy5344 425 YARIENGSNSWRALQAPE-GQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTS 503 (566)
Q Consensus 425 y~~i~~~~~~w~~l~~~~-~~~~~Wd~~styI~~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s 503 (566)
.+++.|+.+..+. +..|.|+++||||+.||||+++. ..++.++|+|+|+||+||||||||||+
T Consensus 511 -----~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~~~------~~~~~~~~vL~klgd~iTTDhIsPAG~----- 574 (753)
T 1c96_A 511 -----PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDKWD------GKDLEDLQILIKVKGKCTTDHISAAGP----- 574 (753)
T ss_dssp -----CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCCCC------SSCEEEEEEEEEBCSCCBHHHHBCCGG-----
T ss_pred -----CCccccccCCCCCCcceEeeCCCCccccCCCCCCCCC------ccccccceEEEeccCCcccccccccch-----
Confidence 4567899887665 57999999999999999998643 568999999999999999999999994
Q ss_pred HHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhhCC---CCCC---ceeecCCCcccc
Q psy5344 504 AAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVS---KPGP---KTVHFPSLEEGG 564 (566)
Q Consensus 504 ~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~~~---~~g~---~t~~~p~~~~~~ 564 (566)
||.. ||||+|++ +|.|.+ .+|| +|+|+|+||.++
T Consensus 575 ----~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~ 614 (753)
T 1c96_A 575 ----WLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGP 614 (753)
T ss_dssp ----GGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEEC
T ss_pred ----hhcc----------------------ccchhhhh-hhhccccccccCCCcceeEEecCCcccc
Confidence 4544 48999999 999984 4666 999999999864
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=4.5e-76 Score=665.37 Aligned_cols=346 Identities=18% Similarity=0.161 Sum_probs=280.4
Q ss_pred CHHHHHhcCCCCCccCCCCCeeEEeccCCccc-------------cc---------CCCCcchHHHHhhccc--------
Q psy5344 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVD-------------FS---------RSGVSSHGVVVTALAL-------- 50 (566)
Q Consensus 1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d-------------~~---------~~~~~~HQv~lE~la~-------- 50 (566)
||++++++|.+ .++|. -+..++||.++.+ |. -..++|||++. .++.
T Consensus 421 ~~~~~~~lg~~--~~~~d-~vv~~~dh~~~~~~~~~~e~~~~~~~Fa~~~g~~~~~pg~GI~Hq~l~-~~~~PG~~ivGt 496 (865)
T 1l5j_A 421 TRDELKDLACL--GFSAD-LVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLN-RMLLPDTVGTGG 496 (865)
T ss_dssp HHHHHHHTTCC--SCCSS-CEEECCCSSSSSCCHHHHHHHHHHHHHHHTTTCEECCTTSBCHHHHHG-GGCCTTCEEEES
T ss_pred HHHHHHHcCCC--cCCCC-eEEEECCCCCcCCCHHHHHHHHHHHHHHHHcCCeEeCCCCceeeeeec-ccccccceEEeC
Confidence 58999999865 34444 3355788987752 33 23466999964 4666
Q ss_pred --c--------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHHHHHHhh------------cCccc
Q psy5344 51 --H--------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQ------------LGVVG 108 (566)
Q Consensus 51 --H--------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~------------~G~~g 108 (566)
| +|.|++|++.+|++|++|+++||+|+|+|+|+|++|||+|||||+|++.+++ .|++|
T Consensus 497 DSHT~~~~Glg~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G 576 (865)
T 1l5j_A 497 DSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSG 576 (865)
T ss_dssp STTCCCSSSEECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTT
T ss_pred CCCccccccceeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChHHHHHHHHHHHHhcccccccccCcccceee
Confidence 7 4569999999999999999999999999999999999999999999877652 23489
Q ss_pred eEEEEccCcccccCccccccccccccccCceEeeecCC-hhHHHHHhh----------cCCCc-----chhhhhhhhhhh
Q psy5344 109 KFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVD-QNSLEYLKQ----------TSKSP-----GCTKVSRWRSGQ 172 (566)
Q Consensus 109 k~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D-e~t~~YL~~----------tgr~~-----~~~~~~~~~~y~ 172 (566)
|+||| +|+++||+++|+|||||++|+|||+|+||+| ++|++||+. +||.+ .+++.++ .|.
T Consensus 577 ~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~~~~~~~~~~--~~~ 652 (865)
T 1l5j_A 577 RILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGME--KWL 652 (865)
T ss_dssp SEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH--HHH
T ss_pred EEEEE--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHHHhhhhhhhhhhccCCccchhHHHHHHHHH--HHH
Confidence 99999 5799999999999999999999999999977 788999998 68743 2233333 555
Q ss_pred hhhhcCCCCCCC--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCccccee-ecCccceeccceEEEEEeecC
Q psy5344 173 NARLVGFKGYGL--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFE-FEGKTYTLKHGSVVIAAITSC 249 (566)
Q Consensus 173 ~ad~~~~~~y~~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~v~-~~g~~~~l~~g~V~~a~IgSC 249 (566)
++ +.+|+.+++ +++++|| |||. |. .|+++.|++|+++. +++ +.+ .+|+++|||||
T Consensus 653 ~~-~~~l~~D~dA~Y~~~iei--DLs~----l~-----eP~VA~P~~Pd~~~---~vse~~~-------~~Id~v~IGSC 710 (865)
T 1l5j_A 653 AN-PELLEADADAEYAAVIDI--DLAD----IK-----EPILCAPNDPDDAR---PLSAVQG-------EKIDEVFIGSC 710 (865)
T ss_dssp HS-CCCCCCCTTCCCSEEEEE--EGGG----CC-----SCEEECTTCTTCEE---EGGGTTT-------CBCCEEEECST
T ss_pred hc-cceeccCCCCcEEEEEEE--Eccc----CC-----CCEecCCCChHhcc---chhhhcc-------cccceEEEecC
Confidence 55 556655444 2779999 9983 20 23356677888754 433 333 25899999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhCCCeEecCCccccccCCCCCCccc
Q psy5344 250 TNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPI 329 (566)
Q Consensus 250 TN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v 329 (566)
||+ ++|++.||.+| ||+++++.||++|+|||++|++||+++|++++|+++||+|.+||||+|+||++.
T Consensus 711 Ttn-~eDl~~AA~il------kg~~v~~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~----- 778 (865)
T 1l5j_A 711 MTN-IGHFRAAGKLL------DAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQAR----- 778 (865)
T ss_dssp TCC-HHHHHHHHHHH------HHSCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSC-----
T ss_pred CCC-HHHHHHHHHHH------cCcccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCc-----
Confidence 877 99988888776 788899999999999999999999999999999999999999999999999864
Q ss_pred cccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccccCCCCCCccCCCCCCceecccCCCChhhhh
Q psy5344 330 VDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIH 409 (566)
Q Consensus 330 ~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~Ei~ 409 (566)
+.+|++ ++||+||||+||||+ ...+|||||++||||||+|+| |+.+|+.
T Consensus 779 ---~~~ge~---~isTsNRNF~GR~G~-~~~~yLaSP~~vAAsAiaG~i------------------------~~p~e~~ 827 (865)
T 1l5j_A 779 ---VADGAT---VVSTSTRNFPNRLGT-GANVFLASAELAAVAALIGKL------------------------PTPEEYQ 827 (865)
T ss_dssp ---CCTTCE---EEESSSCCCTTSSST-TCEEEECCHHHHHHHHHHSBC------------------------CCHHHHH
T ss_pred ---CCCCCE---EEecCCcCCCCCCCC-CcceEECCHHHHHHHHhCCcC------------------------CCHHHHH
Confidence 477885 479999999999995 457999999999999999999 3455777
Q ss_pred HhhhhccCch
Q psy5344 410 AVEKQHVIPA 419 (566)
Q Consensus 410 ~~~~~~~~~~ 419 (566)
++++..++|+
T Consensus 828 ~~~~~~~~~~ 837 (865)
T 1l5j_A 828 TYVAQVDKTA 837 (865)
T ss_dssp HHHHHHHTTH
T ss_pred HHHHhhcCCc
Confidence 7777777774
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=99.10 E-value=4.1e-13 Score=152.98 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=114.7
Q ss_pred CCcCCcCCC------cCceeecCHHHHHHHHHcCccccCCCCCCccCCCCCCce-ecccCCCChhhhh----Hhhhh-cc
Q psy5344 349 NFEGRIHPN------TRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPV-FLRDIWPSRSEIH----AVEKQ-HV 416 (566)
Q Consensus 349 NF~GR~g~~------~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v-~l~diwP~~~Ei~----~~~~~-~~ 416 (566)
=|++|+.|. ++++||+|| |.+++.++.|+.++.+++||+...|..| +|.|+| +++|+. +.++. .+
T Consensus 48 ~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~l 124 (865)
T 1l5j_A 48 LLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTLL 124 (865)
T ss_dssp HHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCCT
T ss_pred HHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhhc
Confidence 478899998 688999999 6689999999999999999999999999 899999 667777 45544 66
Q ss_pred CchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCceEEEEeCCCccccccccC
Q psy5344 417 IPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPA 496 (566)
Q Consensus 417 ~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPA 496 (566)
..++|.++|+..+.|++.|+.+ ++.|...+.|.++||.- +.|++ + ..++||+|.|||||||
T Consensus 125 ~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~-----------~~i~g-~-v~~~~~nIdTD~IiPa 185 (865)
T 1l5j_A 125 MFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA-----------EKLTV-T-VFKVTGETNTDDLSPA 185 (865)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC-----------SCEEE-E-EEEEEEEEEHHHHSCG
T ss_pred cHHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCCCC-----------ceEEE-E-EEecCCCCchhccCch
Confidence 7899999999999999999976 89999887555555542 23444 4 4567999999999999
Q ss_pred CCC-CCCCH--HHHHHHh
Q psy5344 497 GSI-ARTSA--AAKFLAS 511 (566)
Q Consensus 497 G~i-~~~s~--ag~yL~~ 511 (566)
.-. .+.++ .|+||.+
T Consensus 186 ~~l~~~~d~~~~a~~lf~ 203 (865)
T 1l5j_A 186 PDAWSRPDIPLHALAMLK 203 (865)
T ss_dssp GGGGGTTSHHHHGGGTTC
T ss_pred hhhhcCCCHHHHHHHHhh
Confidence 887 44443 4666665
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=98.23 E-value=2.1e-07 Score=91.24 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCCCcc--cCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhcc
Q psy5344 458 PPFFDGMGRDVTPGDRVI--EQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRG 535 (566)
Q Consensus 458 pp~f~~~~~~~~~~~~~i--~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rg 535 (566)
-|||.+|...... .+.+ ..++++.+.||+|+||||+|| |||.. +++++ +.|+
T Consensus 5 ~~~~~~~~~~~~~-M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~ 58 (213)
T 2hcu_A 5 ASMTGGQQMGRGS-MEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKY 58 (213)
T ss_dssp --------CCCCC-CCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGG
T ss_pred ccccCCccccccc-CCCceEEEEEEEEcCCCCCChhhcchH----------HHhCc--CCHHH-------------HHHH
Confidence 5788888766443 4444 578999999999999999998 78864 55555 5899
Q ss_pred ccccchhhhhhCCCCC-CceeecC
Q psy5344 536 TFANIRIVNKLVSKPG-PKTVHFP 558 (566)
Q Consensus 536 tf~n~r~~n~~~~~~g-~~t~~~p 558 (566)
+|+|.|++|+ -++++ +|+...|
T Consensus 59 ~f~~~r~~~~-~g~~~p~f~~~~~ 81 (213)
T 2hcu_A 59 LMYEWRYLDN-NYTENPDFIFNQP 81 (213)
T ss_dssp TTHHHHBSST-TCCBCTTSGGGSG
T ss_pred Hhhccccccc-CCCCCCCccccch
Confidence 9999999997 44444 4555543
No 6
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=93.44 E-value=0.037 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEeCCCccccccccCCCCCCCCHHH
Q psy5344 481 LLLLGDSVTTDHISPAGSIARTSAAA 506 (566)
Q Consensus 481 L~~~gD~iTTDHISPAG~i~~~s~ag 506 (566)
+.++||+||||||+||.-..+.++.+
T Consensus 7 ~~~~~dnidTD~IiPa~~l~~~~~~~ 32 (163)
T 1v7l_A 7 VWKFGDDISTDEITPGRYNLTKDPKE 32 (163)
T ss_dssp EEECCSCCBHHHHSCTTSCCCSCHHH
T ss_pred EEEcCCCCChhccchHHHhCCCCHHH
Confidence 67999999999999985555666554
No 7
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=91.52 E-value=0.067 Score=50.56 Aligned_cols=30 Identities=37% Similarity=0.418 Sum_probs=24.1
Q ss_pred EEEeCCCccccccccCCCCCCCCHHHHHHHhC
Q psy5344 481 LLLLGDSVTTDHISPAGSIARTSAAAKFLASK 512 (566)
Q Consensus 481 L~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~ 512 (566)
+.++||+|+||||+||.-..+.++.+ |.++
T Consensus 7 v~~~~dnIdTD~IiPa~~l~~~~~~~--l~~~ 36 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIPGPYLRTTDPYE--LASH 36 (170)
T ss_dssp EEECCSCCBHHHHSCGGGGSCCCHHH--HHTT
T ss_pred EEECCCCCChhhcChHHHhCCCCHHH--HHHH
Confidence 78899999999999987666777766 5554
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=82.87 E-value=0.38 Score=45.74 Aligned_cols=29 Identities=34% Similarity=0.481 Sum_probs=21.6
Q ss_pred CceEEEEeCCCccccccccCCCCCCCCHHH
Q psy5344 477 QARVLLLLGDSVTTDHISPAGSIARTSAAA 506 (566)
Q Consensus 477 ~arvL~~~gD~iTTDHISPAG~i~~~s~ag 506 (566)
..+++ ++||+|+||+|+||--....++.+
T Consensus 6 ~g~v~-~~gdnIdTD~IiPa~~l~~~~~~~ 34 (176)
T 3vba_A 6 KGRVW-KFGNNVDTDAILPARYLVYTKPEE 34 (176)
T ss_dssp EEEEE-ECCSSCBHHHHSCGGGTTCCSHHH
T ss_pred EEEEE-EeCCCcchhhcCcHHHhCcCCHHH
Confidence 34665 889999999999996555555543
No 9
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=69.59 E-value=1.2 Score=42.01 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=20.8
Q ss_pred cCceEEEEeCCCccccccccCCCCC
Q psy5344 476 EQARVLLLLGDSVTTDHISPAGSIA 500 (566)
Q Consensus 476 ~~arvL~~~gD~iTTDHISPAG~i~ 500 (566)
...+++.+.||+|.||+|.|+.-..
T Consensus 10 ~~G~~~~l~~dnIdTD~IiPa~~L~ 34 (171)
T 3h5j_A 10 HSGIGVPLRRSNVDTDQIIPAVFLK 34 (171)
T ss_dssp EEEEEEEECCCSCCHHHHSCGGGTT
T ss_pred EEEEEEEccCCccCcccCCchhhcC
Confidence 4568888889999999999987543
No 10
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=48.75 E-value=15 Score=31.91 Aligned_cols=34 Identities=35% Similarity=0.417 Sum_probs=27.3
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 242 VIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 242 ~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
.+++|++|..|--. -..||..|-++|.+.|.+++
T Consensus 4 kivaVTaCptGiAh-TymAaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 4 KLLAITSCPNGIAH-TYMAAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEEECSSCSHH-HHHHHHHHHHHHHHHTCEEE
T ss_pred eEEEEecCCCcHHH-HHHHHHHHHHHHHHCCCeEE
Confidence 46799999999544 45667888888889998887
No 11
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=46.56 E-value=14 Score=32.19 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=25.6
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 243 IAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 243 ~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
+++|++|..|--.- ..||..|-++|.+.|.+++
T Consensus 5 ivaVTaCptGiAhT-ymAaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHT-FMAADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CH-HHHHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 57999999996555 4566788888889999887
No 12
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=35.83 E-value=25 Score=30.84 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=26.9
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 242 VIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 242 ~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
.+++|++|..|--.. -.||..|-++|.+.|..++
T Consensus 7 kIvaVTaCptGiAHT-yMAAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 7 KLIALCACPMGLAHT-FMAAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEEESSCHHHH-HHHHHHHHHHHHHTSSEEE
T ss_pred cEEEEEcCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 578999999996555 4566788888888898877
No 13
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=33.93 E-value=29 Score=30.13 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=26.8
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccC
Q psy5344 242 VIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVA 276 (566)
Q Consensus 242 ~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~ 276 (566)
.+++|++|..|--.. ..||..|-+.|.++|..++
T Consensus 4 kivaVtaCptGiAhT-ymAAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 4 KIIAVTACATGVAHT-YMAAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEEECSSCHHHH-HHHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEECCCcHHHH-HHHHHHHHHHHHHCCCEEE
Confidence 467999999996555 5566778888888998887
No 14
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=27.04 E-value=18 Score=35.03 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=16.4
Q ss_pred CceEEEEeCCCccccccccCC
Q psy5344 477 QARVLLLLGDSVTTDHISPAG 497 (566)
Q Consensus 477 ~arvL~~~gD~iTTDHISPAG 497 (566)
..+++.+-+|+|.||+|.|+=
T Consensus 11 ~G~a~~l~~dnIDTD~IIP~~ 31 (203)
T 3q3w_A 11 KGIACPLEYANIDTDQIIPKQ 31 (203)
T ss_dssp EEEEEEECCSSCBHHHHSCGG
T ss_pred EEEEEECCCcccChhhcchHH
Confidence 456655566999999999973
No 15
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=21.99 E-value=1.4e+02 Score=24.01 Aligned_cols=40 Identities=8% Similarity=-0.208 Sum_probs=32.5
Q ss_pred HHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHHH
Q psy5344 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTI 97 (566)
Q Consensus 58 ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~i 97 (566)
+++..+---|-|......|.|+|+-.=..|+|.+|++|+-
T Consensus 33 ~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlt~~D~~lA~ 72 (80)
T 1usm_A 33 ALAERENHHPRLTVEWGRVTVEWWTHSAGGVTEKDREMAR 72 (80)
T ss_dssp HHHHHHTCCCEEEEETTEEEEEECBTTTTBCCHHHHHHHH
T ss_pred HHHHHhCCCCcEEEeCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 4455566678888899999999988777899999999763
No 16
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=20.30 E-value=1.4e+02 Score=25.03 Aligned_cols=39 Identities=8% Similarity=-0.056 Sum_probs=32.9
Q ss_pred HHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhHHHHH
Q psy5344 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLT 96 (566)
Q Consensus 58 ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakDliL~ 96 (566)
+++..+---|-|......|.|+|+=.=..|+|.+|++|.
T Consensus 51 ~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlT~~D~~lA 89 (97)
T 3jst_A 51 LYAEKLDHHPEWFNAYNRVDVTLATHSENGVTELDIKMA 89 (97)
T ss_dssp HHHHHHTCCCEEEEETTEEEEEECBGGGTBCCHHHHHHH
T ss_pred HHHHHhCCCCeEEEeCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 445566667989999999999998888889999999875
Done!