RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5344
(566 letters)
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
Length = 898
Score = 783 bits (2023), Expect = 0.0
Identities = 316/530 (59%), Positives = 383/530 (72%), Gaps = 31/530 (5%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
GIEAEAVMLGQ IS++LPEV+G+K+ GKLS++VT+TDLVLT+T LR+ GVVGKFVEF+G
Sbjct: 233 GIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYG 292
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
PGVK LS+ADRATI+NM PEYGAT+GFFP+D+ +L+YLKQT +S KV A
Sbjct: 293 PGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSE--EKVELIEKYLKAN 350
Query: 176 LVGFKGYGLK---SQVIE--------------------PLNQLGFDVVGFGCMTC-IGNS 211
+ F+ Y + S V+E PL+ L D C++ +G
Sbjct: 351 GL-FRTYAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTA--CLSAPVGFK 407
Query: 212 GPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEA 271
G P +K +F ++GK YTL HGSVVIAAITSCTNTSNPSVML AGLLAKKAVE
Sbjct: 408 G-FGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEK 466
Query: 272 GLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVD 331
GL V PYIKTSLSPGS VVT YL S +++ L +LGF G+GCMTCIGNSG LDP + +
Sbjct: 467 GLKVPPYIKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSE 526
Query: 332 AIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNK 391
AI N+LV A VLSGNRNFEGR+HP TRANYLASP LV+AYALAG V+IDFE EP+G++K
Sbjct: 527 AITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDK 586
Query: 392 QGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLS 451
G PVFLRDIWPSR EI A+E ++V P MF+EVY+ I G+ W LQ P+G+LY WD
Sbjct: 587 TGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEK 646
Query: 452 STYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLAS 511
STYI PPFF M + P + IE A LL LGDS+TTDHISPAG+IA+ S AAK+L
Sbjct: 647 STYIHNPPFFQTMELEPPP-IKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLME 705
Query: 512 KGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLE 561
+G+ DFN+YG+RRGND+VMVRGTFANIR++NKL K GP TVH P+ E
Sbjct: 706 RGVERKDFNTYGARRGNDEVMVRGTFANIRLINKLCGKVGPNTVHVPTGE 755
Score = 77.4 bits (191), Expect = 1e-14
Identities = 29/36 (80%), Positives = 31/36 (86%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRS 36
MRDA+K L GDP KINP+ P DLVIDHSVQVDFSRS
Sbjct: 110 MRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRS 145
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated.
Length = 888
Score = 776 bits (2008), Expect = 0.0
Identities = 293/539 (54%), Positives = 355/539 (65%), Gaps = 57/539 (10%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
GIEAEA MLGQ S+L+PEV+G K+ GKL + VT+TDLVLT+T+ LR+ GVVGKFVEFFG
Sbjct: 230 GIEAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFG 289
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
G+ LS+ADRATI+NM PEYGAT GFFP+D+ +L+YL+ T R +
Sbjct: 290 EGLASLSLADRATIANMAPEYGATCGFFPIDEETLDYLRLTG-----------RDEEQVA 338
Query: 176 LVG--FKGYGL---------KSQVIEPLNQLGFD---VVGFGCMTCIGNSGPLDP----- 216
LV K GL + V+E D V + +GP P
Sbjct: 339 LVEAYAKAQGLWRDPLEEPVYTDVLE------LDLSTVE-----PSL--AGPKRPQDRIP 385
Query: 217 ------------PIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLL 264
+ G EG+ Y L G+VVIAAITSCTNTSNPSVM+ AGLL
Sbjct: 386 LSDVKEAFAKSAELGVQGFGLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLL 445
Query: 265 AKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGP 324
AKKAVE GL V P++KTSL+PGS VVT YL ++ ++ L LGF++VG+GC TCIGNSGP
Sbjct: 446 AKKAVEKGLKVKPWVKTSLAPGSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGP 505
Query: 325 LDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEK 384
L P I AI N+LVV VLSGNRNFEGRIHP +ANYLASP LV+AYALAGTVDID EK
Sbjct: 506 LPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYALAGTVDIDLEK 565
Query: 385 EPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQ 444
+P+GT+K G PV+L+DIWPS EI AV + V P MFR+ YA + G W A++ PEG
Sbjct: 566 DPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGP 625
Query: 445 LYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSA 504
LY WD STYI+ PP+F+GM + P R I+ ARVL LLGDS+TTDHISPAG+I S
Sbjct: 626 LYDWDPDSTYIRNPPYFEGMLAEPGPV-RDIKGARVLALLGDSITTDHISPAGAIKADSP 684
Query: 505 AAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVS-KPGPKTVHFPSLEE 562
A K+L G+ P DFNSYGSRRGN +VM+RGTFANIRI N++V G T HFP E
Sbjct: 685 AGKYLLEHGVEPKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEV 743
Score = 72.5 bits (179), Expect = 3e-13
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDF 33
MRDA+ L GDP KINP+ P DLVIDHSVQVD+
Sbjct: 104 MRDAIADLGGDPAKINPLVPVDLVIDHSVQVDY 136
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional.
Length = 889
Score = 690 bits (1783), Expect = 0.0
Identities = 276/533 (51%), Positives = 343/533 (64%), Gaps = 44/533 (8%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
GIEAEAVMLGQ + +L+P+V+G ++ GKL + VT+TDLVLT+T+ LR+ GVVGKFVEFFG
Sbjct: 230 GIEAEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFG 289
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
GV L++ DRATI+NM PEYGAT+GFFPVD+ +L+YL+ T R+
Sbjct: 290 EGVASLTLGDRATIANMAPEYGATMGFFPVDEQTLDYLRLTG-----------RTEAQIA 338
Query: 176 LVG--FKGYGL---KSQVIEPLNQLGFDVVGFGCMTCIGNS--GP--------------- 213
LV K GL L D ++ + S GP
Sbjct: 339 LVEAYAKAQGLWGDPKAEPRYTRTLELD------LSTVAPSLAGPKRPQDRIALGNVKSA 392
Query: 214 LDPPIDKLGATGQFEFEGK---TYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVE 270
K A F + + L G+V IAAITSCTNTSNPSV++ AGLLAKKAVE
Sbjct: 393 FSDLFSKPVAENGFAKKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVE 452
Query: 271 AGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIV 330
GL+V P++KTSL+PGS VVT YL + ++ L +LGF +VG+GC TCIGNSGPL P I
Sbjct: 453 RGLTVKPWVKTSLAPGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIE 512
Query: 331 DAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTN 390
AI KN+LV A VLSGNRNFEGRIHPN +AN+LASP LV+AYALAGTV D EP+G
Sbjct: 513 QAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLVVAYALAGTVRRDLMTEPLGKG 572
Query: 391 KQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDL 450
K G PV+L+DIWPS +EI A+ V P FR+ YA + GS W A++AP+G LY WD
Sbjct: 573 KDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDP 632
Query: 451 SSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLA 510
STYI+RPPFFD ++ AR L +LGDS+TTDHISPAG+I S A K+L
Sbjct: 633 KSTYIRRPPFFDFSMGP-AASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLK 691
Query: 511 SKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLV-SKPGPKTVHFPSLEE 562
G+ DFNSYGSRRGN +VM+RGTFAN+RI N ++ K G T+H PS E
Sbjct: 692 ENGVPKADFNSYGSRRGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEV 744
Score = 59.6 bits (145), Expect = 3e-09
Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRS 36
MRDA GDP KINP+ P DLV+DHSV VD+
Sbjct: 103 MRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQ 138
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 653 bits (1687), Expect = 0.0
Identities = 298/537 (55%), Positives = 359/537 (66%), Gaps = 41/537 (7%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
GIEAEA MLGQ +S++LP V+G+K+ GKL VT+TDLVLT+T+ LR+ GVVGKFVEF+G
Sbjct: 265 GIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYG 324
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
G+ ELS+ADRATI+NM PEYGAT+GFFPVD +L+YLK T +S V+ + A
Sbjct: 325 EGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--TVAMIEAYLRAN 382
Query: 176 LVGFKGYG--LKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDP----------------- 216
+ F Y + +V +L + V CI SGP P
Sbjct: 383 KM-FVDYNEPQQERVYSSYLELDLEDV----EPCI--SGPKRPHDRVPLKEMKADWHSCL 435
Query: 217 -----------PIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLA 265
P + +F F G+ L+HGSVVIAAITSCTNTSNPSVMLGAGL+A
Sbjct: 436 DNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVA 495
Query: 266 KKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPL 325
KKA E GL V P+IKTSL+PGSGVVT YL +S + + LNQ GF +VG+GC TCIGNSG L
Sbjct: 496 KKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGEL 555
Query: 326 DPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKE 385
D + AI +N++V A VLSGNRNFEGR+HP TRANYLASP LV+AYALAGTVDIDFEKE
Sbjct: 556 DESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKE 615
Query: 386 PIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQL 445
PIGT K G VF RDIWPS E+ V + V+P MF+ Y I G+ W L P G L
Sbjct: 616 PIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTL 675
Query: 446 YPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAA 505
Y WD STYI PP+F M PG ++ A LL GDS+TTDHISPAGSI + S A
Sbjct: 676 YSWDPKSTYIHEPPYFKNMTMS-PPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPA 734
Query: 506 AKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVS-KPGPKTVHFPSLE 561
AK+L +G+ DFNSYGSRRGND++M RGTFANIRIVNKL+ + GPKTVH P+ E
Sbjct: 735 AKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVGPKTVHIPTGE 791
Score = 68.3 bits (167), Expect = 7e-12
Identities = 26/36 (72%), Positives = 30/36 (83%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRS 36
MRDA+ +L GDP KINP+ P DLVIDHSVQVD +RS
Sbjct: 142 MRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARS 177
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1. This model
represents one form of the TCA cycle enzyme aconitate
hydratase, also known as aconitase and citrate
hydro-lyase. It is found in bacteria, archaea, and
eukaryotic cytosol. It has been shown to act also as an
iron-responsive element binding protein in animals and
may have the same role in other eukaryotes [Energy
metabolism, TCA cycle].
Length = 876
Score = 640 bits (1652), Expect = 0.0
Identities = 286/533 (53%), Positives = 356/533 (66%), Gaps = 38/533 (7%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
GIEAEA MLGQ + +PEVIG K+ GKL + VT+TDLVLT+T+ LR+ GVVGKFVEFFG
Sbjct: 213 GIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEFFG 272
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
PG+ ELS+ADRATI+NM PEYGAT GFFP+D +L+YL+ T + ++ + AR
Sbjct: 273 PGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVE----KYAR 328
Query: 176 LVG-FKGYGLK---SQVIE---------------PLNQLGFDVVGFGCMTCI----GNSG 212
G F + + V+E P +++ V + G+ G
Sbjct: 329 AQGLFYDDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKG 388
Query: 213 PLDP--PIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVE 270
P+ K G+ L+ G+VVIAAITSCTNTSNPSVMLGAGLLAKKAVE
Sbjct: 389 FTLRKEPLKKK-------VNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVE 441
Query: 271 AGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIV 330
GL V PY+KTSL+PGS VVT YL ES ++ L +LGF++VG+GC TCIGNSGPL +
Sbjct: 442 LGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEELGFNLVGYGCTTCIGNSGPLPKYVE 501
Query: 331 DAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTN 390
+AI+KN+L V VLSGNRNFEGRIHP + NYLASP LV+AYALAG +DI+ EPIGT+
Sbjct: 502 EAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLYTEPIGTD 561
Query: 391 KQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDL 450
K G PV+LRDIWPS EI A V P MF++ Y I G+ W +++ P G Y WD
Sbjct: 562 KDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDE 621
Query: 451 SSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLA 510
STYI+ PPFF+ M +D + I+ AR+LLLLGDS+TTDHISPAGSI + S A K+L
Sbjct: 622 KSTYIRLPPFFEEMKQDPEEVED-IKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQ 680
Query: 511 SKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLV-SKPGPKTVHFPSLEE 562
+G+S DFNSYGSRRGN +VM+RGTFANIRI N +V K G TVHFP +
Sbjct: 681 ERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMVKGKEGGYTVHFPDGKV 733
Score = 63.7 bits (155), Expect = 1e-10
Identities = 24/36 (66%), Positives = 31/36 (86%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRS 36
MR+A+K+L GDP+KINP+ P DLVIDHSVQVD+ +
Sbjct: 86 MREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGT 121
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 624 bits (1611), Expect = 0.0
Identities = 275/524 (52%), Positives = 343/524 (65%), Gaps = 40/524 (7%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
GIEAEA MLGQ +L+PEV+G K+ GKL + VT+TDLVLT+T LR+ GVVGKFVEFFG
Sbjct: 218 GIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFG 277
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTK-VSRWRSGQNA 174
PGV LS+ADRATI+NM PEYGAT GFFP+D+ +L+YL+ T +S V + Q
Sbjct: 278 PGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGL 337
Query: 175 -RLVGFKG--YGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGAT-- 224
K Y +V+E L+ + + +GP P P+ ++
Sbjct: 338 WYDPADKDAEY---DKVLELDLSTVEPSL-----------AGPKRPQDRVPLSEVAENFE 383
Query: 225 -------GQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAP 277
+ + L G VVIAAITSCTNTSNP V++ AGLLAKKAVE GL V P
Sbjct: 384 KILREIEIKRVYSLLGKELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKP 443
Query: 278 YIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNE 337
++KTS++PGS VVT YL ++ ++ L +LGF++VG+GC TCIGNSGPL I AI N+
Sbjct: 444 WVKTSVAPGSKVVTEYLEKAGLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDND 503
Query: 338 LVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVF 397
LVV VLSGNRNFEGRI P +ANYLASP LV+AYALAGT++ D +P+GT+ G PV+
Sbjct: 504 LVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLTTDPLGTDNDGKPVY 563
Query: 398 LRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKR 457
L+DIWPS EI + V P MFR+ YA + W A++ PEG LY W STYI+
Sbjct: 564 LKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619
Query: 458 PPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPP 517
PPFFDGMG + P I+ ARVL LGDS+TTDHISPAGSI S A K+L G+
Sbjct: 620 PPFFDGMGAEPKP----IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERI 675
Query: 518 DFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLE 561
DFNSYGSRRGN +VM+RGTFANIRI N++V G T+H PS E
Sbjct: 676 DFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGEGGYTIHQPSGE 719
Score = 55.4 bits (134), Expect = 6e-08
Identities = 24/32 (75%), Positives = 26/32 (81%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVD 32
MRDA+ L GDP KINP+ P DLVIDHSVQVD
Sbjct: 95 MRDAMVELGGDPAKINPVVPVDLVIDHSVQVD 126
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain. Aconitase A
catalytic domain. This is the major form of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydrolyase. It includes bacterial
and archaeal aconitase A, and the eukaryotic cytosolic
form of aconitase. This group also includes sequences
that have been shown to act as an iron-responsive
element (IRE) binding protein in animals and may have
the same role in other eukaryotes.
Length = 404
Score = 415 bits (1069), Expect = e-142
Identities = 182/324 (56%), Positives = 213/324 (65%), Gaps = 66/324 (20%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
GIEAEAVMLGQ IS+LLPEV+G K+ GKL VT+TDLVLT+T+ LR++GVVGKFVEFFG
Sbjct: 146 GIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFG 205
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
PGV +LS+ADRATI+NM P EY G T
Sbjct: 206 PGVAKLSVADRATIANMAP----------------EY--------GAT------------ 229
Query: 176 LVGFKGYGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTY 234
GF + + +QV+E L+ + V SGP P D++
Sbjct: 230 -CGF--FPVDTQVVELDLSTVEPSV-----------SGPKRPQ-DRV------------- 261
Query: 235 TLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYL 294
HGSVVIAAITSCTNTSNPSVML AGLLAKKAVE GL V PY+KTSL+PGS VVT YL
Sbjct: 262 -PLHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYL 320
Query: 295 RESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRI 354
S ++ L +LGF VVG+GC TCIGNSGPL + +AI++N+LVVA VLSGNRNFEGRI
Sbjct: 321 EASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRI 380
Query: 355 HPNTRANYLASPLLVIAYALAGTV 378
HP RANYLASP LV+AYALAGTV
Sbjct: 381 HPLVRANYLASPPLVVAYALAGTV 404
Score = 73.5 bits (181), Expect = 7e-14
Identities = 27/36 (75%), Positives = 30/36 (83%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRS 36
MRDAVK L GDP+KINP+ P DLVIDHSVQVDF +
Sbjct: 19 MRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGT 54
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase,
Fe/S-dependent. Members of this family appear in an
operon for the degradation of propionyl-CoA via
2-methylcitrate. This family is homologous to aconitases
A and B and appears to act the part as
2-methylisocitrate dehydratase, the enzyme after PrpD
and before PrpB. In Escherichia coli, which lacks a
member of this family, 2-methylisocitrate dehydratase
activity was traced to aconitase B (TIGR00117)
(PMID:12473114).
Length = 858
Score = 418 bits (1075), Expect = e-137
Identities = 233/561 (41%), Positives = 328/561 (58%), Gaps = 34/561 (6%)
Query: 3 DAVKSLNGDPQKINPICPSDLV-IDHSVQVDFSRSGVSSHGVVVTALALHARD-PGIEAE 60
D + + NG +IN S ++ + + V + G SH V AL + A G+EAE
Sbjct: 162 DVIPAGNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAE 221
Query: 61 AVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKE 120
VMLG+A + LP+++G ++ GK +T+TD+VL +T+ LR+ VV ++EFFG G +
Sbjct: 222 TVMLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARA 281
Query: 121 LSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFK 180
L+I DRATISNM PEYGAT F +D+ +++YLK T + P K+ A+ G
Sbjct: 282 LTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKLVE----TYAKAAGLW 337
Query: 181 GYGLKSQVIEPLNQLGFDVVGFGCMTCIGN-SGPLDP----PIDKLGATG-----QFEFE 230
LK V E V+ F + + N +GP +P P L A G + + E
Sbjct: 338 ADSLKHAVYE-------RVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIAGPAEEQPE 390
Query: 231 GKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVV 290
G + G+V+IAAITSCTNTSNP ++ AGLLA+ A + GL P++KTS +PGS V
Sbjct: 391 GL---MPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVA 447
Query: 291 TYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNF 350
YL E+ ++ L QLGF +V F C TC G SG LDP I I +L VLSGNRNF
Sbjct: 448 QLYLEEAGLLPELEQLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNF 507
Query: 351 EGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHA 410
+GRIHP + +LASP LV+AYA+AGT+ D EK+ +G + G P+ L+DIWPS EI A
Sbjct: 508 DGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGVDADGKPIRLKDIWPSDEEIDA 567
Query: 411 VEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTP 470
V V P FR+VY + + ++ Q+ LY W STYI+RPP+++G
Sbjct: 568 VVAAAVKPEQFRKVYIPMFDLDDT----QSAVSPLYDWRPMSTYIRRPPYWEG----ALA 619
Query: 471 GDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDD 530
G+R ++ R L +LGD++TTDH+SP+ +I SAA ++LA GL DFNSY + RG+
Sbjct: 620 GERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHL 679
Query: 531 VMVRGTFANIRIVNKLVSKPG 551
R TFAN ++ N++V G
Sbjct: 680 TAQRATFANPKLFNEMVKNDG 700
Score = 43.4 bits (102), Expect = 3e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFS 34
+RDA+ GDP ++NP+ P+ L++DHS+ V++
Sbjct: 93 LRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYG 126
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase).
Length = 464
Score = 257 bits (659), Expect = 1e-79
Identities = 110/337 (32%), Positives = 154/337 (45%), Gaps = 35/337 (10%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
G EAE V+ GQ P+V+G K+ GKL+ +T+ D++L + L G GK VEFFG
Sbjct: 147 GSEAEHVLAGQPWEQKKPKVMGIKLTGKLNGGITAKDVILKVIGKLTVKGGTGKIVEFFG 206
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
G+ +LS+ R TI NM E GAT G FP D+ + +YLK T ++P + A
Sbjct: 207 EGIDDLSMEGRMTICNMAIEIGATTGLFPPDETTFKYLKGTGRAP---------KAEEAD 257
Query: 176 LVGFKGYGLKS-------QVIE-PLNQLGFDVVGF---GCMTCIGNSGP-----LDPPID 219
K LKS +VIE L+ + V G I P LDP +
Sbjct: 258 EAVAKWKTLKSDKDAQYDKVIEIDLSDIEPHVTGPTTPQDAVPISEVPPDPNNFLDPVVK 317
Query: 220 KLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYI 279
+ + LK V A I SCTN+S + A ++ A G + P++
Sbjct: 318 SMEKALAYMGLWPGTPLKDIKVDKAFIGSCTNSSYEDLRRAAAIVKGAA---GKGLKPWV 374
Query: 280 KTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELV 339
K ++ PGS V + + ++ GF+ GC CIG + D
Sbjct: 375 KATVVPGSEQVKATAERDGLDKIFDEAGFEWRANGCSPCIGMNDRPDI-------IKGEK 427
Query: 340 VAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAG 376
V S NRNFEGR N R ++LASP +V A A+AG
Sbjct: 428 NTCVSSSNRNFEGRQGANGRTHWLASPAMVAAAAIAG 464
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes
the reversible isomerization of citrate and isocitrate
as part of the TCA cycle. Aconitase catalytic domain.
Aconitase (aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Cis-aconitate is formed as an intermediate
product during the course of the reaction. In eukaryotes
two isozymes of aconitase are known to exist: one found
in the mitochondrial matrix and the other found in the
cytoplasm. Aconitase, in its active form, contains a
4Fe-4S iron-sulfur cluster; three cysteine residues
have been shown to be ligands of the 4Fe-4S cluster.
This is the Aconitase core domain, including structural
domains 1, 2 and 3, which binds the Fe-S cluster. The
aconitase family also contains the following proteins: -
Iron-responsive element binding protein (IRE-BP), a
cytosolic protein that binds to iron-responsive elements
(IREs). IREs are stem-loop structures found in the
5'UTR of ferritin, and delta aminolevulinic acid
synthase mRNAs, and in the 3'UTR of transferrin
receptor mRNA. IRE-BP also express aconitase activity. -
3-isopropylmalate dehydratase (isopropylmalate
isomerase), the enzyme that catalyzes the second step in
the biosynthesis of leucine. - Homoaconitase
(homoaconitate hydratase), an enzyme that participates
in the alpha-aminoadipate pathway of lysine
biosynthesis and that converts cis-homoaconitate into
homoisocitric acid.
Length = 389
Score = 196 bits (501), Expect = 2e-57
Identities = 108/324 (33%), Positives = 143/324 (44%), Gaps = 44/324 (13%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
G + VM G L PEV+G + GKLS VT D+VL + + GV+ + VEF+G
Sbjct: 109 GGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYG 168
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
GV LSI DR TI NM E GAT G FP D+ +L++L+ T + + A
Sbjct: 169 EGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKNLWLAFPEELLA- 227
Query: 176 LVGFKGYGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTY 234
QVIE L++L D+ SGP P +
Sbjct: 228 ----DEGAEYDQVIEIDLSELEPDI-----------SGPNRP-----------DDAVSVS 261
Query: 235 TLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYL 294
++ + I SCTN + S ML A L K A VAP ++ ++PGS +V L
Sbjct: 262 EVEGTKIDQVLIGSCTN-NRYSDMLAAAKLLKGAK-----VAPGVRLIVTPGSRMVYATL 315
Query: 295 RESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRI 354
E L G ++ GC C+GN L GV SGNRNF GR+
Sbjct: 316 SREGYYEILVDSGARILPPGCGPCMGNGARLVA----------DGEVGVSSGNRNFPGRL 365
Query: 355 HPNTRANYLASPLLVIAYALAGTV 378
R YLASP L A A+AG +
Sbjct: 366 GTYERHVYLASPELAAATAIAGKI 389
>gnl|CDD|238812 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain. This is the
major form of the TCA cycle enzyme aconitate hydratase,
also known as aconitase and citrate hydro-lyase. It
includes bacterial and archaeal aconitase A, and the
eukaryotic cytosolic form of aconitase. This group also
includes sequences that have been shown to act as an
iron-responsive element (IRE) binding protein in animals
and may have the same role in other eukaryotes. This is
the aconitase-like swivel domain, which is believed to
undergo swivelling conformational change in the enzyme
mechanism.
Length = 171
Score = 145 bits (369), Expect = 4e-41
Identities = 55/80 (68%), Positives = 62/80 (77%)
Query: 483 LLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRI 542
LLGDSVTTDHISPAGSIA+ S A K+LA +G+ P DFNSYGSRRGND+VM+RGTFANIR+
Sbjct: 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRL 60
Query: 543 VNKLVSKPGPKTVHFPSLEE 562
NKLV T H P E
Sbjct: 61 RNKLVPGTEGGTTHHPPTGE 80
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the
isomerization between 2-isopropylmalate and
3-isopropylmalate. Aconatase-like catalytic domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is also
found in eukaryotes.
Length = 382
Score = 126 bits (319), Expect = 7e-32
Identities = 80/325 (24%), Positives = 126/325 (38%), Gaps = 58/325 (17%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+ V+ + +PE + +EGKL VT+ D++L I + G K +EF G
Sbjct: 112 DVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEA 171
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
++ LS+ +R T+ NM E GA G D+ + EYLK K+ +S ++A
Sbjct: 172 IESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAY----WKELKSDEDAEYD 227
Query: 178 GFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGKT 233
K + + +EP V + N P+ ID+
Sbjct: 228 --KVVEIDASELEP-------QVAWP--HSPDNVVPVSEVEGIKIDQ------------- 263
Query: 234 YTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYY 293
V I SCTN + A +L + VA ++ + P S V
Sbjct: 264 -------VFIG---SCTNGRLEDLRAAAEILKGR------KVADGVRLIVVPASQRVYKQ 307
Query: 294 LRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGR 353
+ +IE + G +V GC C+G + E V+ + NRNF+GR
Sbjct: 308 AEKEGLIEIFIEAGAEVRPPGCGACLGGHM-------GVLAPGERCVS---TSNRNFKGR 357
Query: 354 IHPNTRANYLASPLLVIAYALAGTV 378
+ YLASP A A+ G +
Sbjct: 358 MGSPGARIYLASPATAAASAITGEI 382
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and citrate
hydro-lyase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle.
Cis-aconitate is formed as an intermediary product
during the course of the reaction. In eukaryotes two
isozymes of aconitase are known to exist: one found in
the mitochondrial matrix and the other found in the
cytoplasm. This is the mitochondrial form. The
mitochondrial product is coded by a nuclear gene. Most
members of this subfamily are mitochondrial but there
are some bacterial members.
Length = 412
Score = 126 bits (318), Expect = 2e-31
Identities = 102/329 (31%), Positives = 149/329 (45%), Gaps = 40/329 (12%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
G +A VM G L P+VIG K+ GKLS + + D++L + L G G VE+FG
Sbjct: 116 GADAVDVMAGIPWELKCPKVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFG 175
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
PGV LS TI NM E GAT FP ++ +YLK T ++ +++
Sbjct: 176 PGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRA----EIADLADEFKDD 231
Query: 176 LVGFKGYGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFE 230
L+ Q+IE L++L + +GP P P+ K E
Sbjct: 232 LLVADEGAEYDQLIEINLSELEPHI-----------NGPFTPDLATPVSKFKE----VAE 276
Query: 231 GKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVV 290
+ L + + I SCTN+S M A +AK+A+ GL +++PGS +
Sbjct: 277 KNGWPLD---LRVGLIGSCTNSSYED-MGRAASIAKQALAHGLKCK--SIFTITPGSEQI 330
Query: 291 TYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNF 350
+ +++ G V+ C CIG D + EKN +V S NRNF
Sbjct: 331 RATIERDGLLQTFRDAGGIVLANACGPCIGQWDRKD---IKKGEKNTIVT----SYNRNF 383
Query: 351 EGR--IHPNTRANYLASPLLVIAYALAGT 377
GR +P T A ++ASP +V A A+AGT
Sbjct: 384 TGRNDANPATHA-FVASPEIVTAMAIAGT 411
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
This model represents mitochondrial forms of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase [Energy metabolism,
TCA cycle].
Length = 745
Score = 126 bits (318), Expect = 2e-30
Identities = 127/453 (28%), Positives = 187/453 (41%), Gaps = 67/453 (14%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
G +A + G L P+++G K+ GKL+ + + D++L + L G G VE+FG
Sbjct: 173 GADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYFG 232
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
PGV+ LS ATI NM E GAT FP ++ YLK T+++ + ++ +
Sbjct: 233 PGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRA-QIAEDAKTGQYSFFK 291
Query: 176 LVGFKGYGLKSQVIE-PLNQLGFDVVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFE 230
L +G ++IE L++L + +GP P PI K T Q
Sbjct: 292 LKADEG-AQYDELIEIDLSKLEPHI-----------NGPFTPDLSTPISKFKETVQKN-- 337
Query: 231 GKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVV 290
G L G I SCTN+S M + K A +AGL P ++PGS +
Sbjct: 338 GWPEKLSAG-----LIGSCTNSSYED-MSRCASIVKDAEQAGLK--PKSPFYVTPGSEQI 389
Query: 291 TYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNF 350
L +++ + G V+ C CIG D V E N ++ S NRNF
Sbjct: 390 RATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD--DVKKGEPNTILT----SYNRNF 443
Query: 351 EGR--IHPNTRANYLASPLLVIAYALAGTVDI----DFEKEPIGTNKQGAPVFLRDIWPS 404
GR +P T N+LASP +V A + AG++ D P G + D P
Sbjct: 444 RGRNDGNPATM-NFLASPEIVTAMSYAGSLTFNPLTDSLTTPDGKEFKFPAPK-GDELPE 501
Query: 405 RSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGM 464
+ + P + +S R LQ E PW+
Sbjct: 502 KGFEAGRDTFQAPPGSPNP-NVEVAVSPSSDR-LQLLEP-FEPWN--------------- 543
Query: 465 GRDVTPGDRVIEQARVLLLLGDSVTTDHISPAG 497
G+D++ RVL+ + TTDHIS AG
Sbjct: 544 GKDLS-------GLRVLIKVTGKCTTDHISAAG 569
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino
acid transport and metabolism].
Length = 423
Score = 111 bits (280), Expect = 2e-26
Identities = 84/329 (25%), Positives = 131/329 (39%), Gaps = 62/329 (18%)
Query: 58 EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG 117
+ V+ + +P+ + ++EGKL VT+ D++L + + G G +EF G
Sbjct: 142 DVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEA 201
Query: 118 VKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLV 177
++ LS+ R T+ NM E GA G D+ + EYLK+ + K +S ++A
Sbjct: 202 IRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWDGAVAYWKT--LKSDEDAVYD 259
Query: 178 GFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLK 237
K L + +EP + N P+ E E +
Sbjct: 260 --KVVELDASDLEPQVAWPTNP---------DNVVPVS------------EVEPDPIKID 296
Query: 238 HGSVVIAAITSCTNTSNPSVMLGAG----LLAKKAVEAGLSVAPYIKTSLSPGSGVVTYY 293
I SCTN G L A + G VAP ++ + PGS V
Sbjct: 297 Q-----VFIGSCTN----------GRIEDLRAAAEILKGRKVAPGVRAIVVPGSRRV--K 339
Query: 294 LR--ESQVIEPLNQLGFDVVGFGCMTCIG-NSGPLDPPIVDAIEKNELVVAGVLSGNRNF 350
+ + + + + GF+ GC C+G + G L P E + + NRNF
Sbjct: 340 EQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGP--------GERCAS---TSNRNF 388
Query: 351 EGRI-HPNTRANYLASPLLVIAYALAGTV 378
EGR P R YLASP + A A+ G +
Sbjct: 389 EGRQGSPGART-YLASPAMAAAAAVEGEI 416
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex
type. This model represents a small family of proteins
homologous (and likely functionally equivalent to)
aconitase 1. Members are found, so far in the anaerobe
Clostridium acetobutylicum, in the microaerophilic,
early-branching bacterium Aquifex aeolicus, and in the
halophilic archaeon Halobacterium sp. NRC-1. No member
is experimentally characterized [Energy metabolism, TCA
cycle].
Length = 658
Score = 112 bits (282), Expect = 3e-26
Identities = 111/445 (24%), Positives = 175/445 (39%), Gaps = 87/445 (19%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
GI+ A M G+A L +PE++G +EG+L ++ T+ D++L + + L G +GK E+FG
Sbjct: 134 GIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFG 193
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
GV+ELS+ +RATI+NM E GAT FP D + +L + + + A
Sbjct: 194 EGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVDLLADADAEYAD 253
Query: 176 LVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYT 235
+ L+ + EP + +VV P+ E G
Sbjct: 254 EIEIDLSDLEPLIAEP--HMPDNVV----------------PVR--------EIAG---- 283
Query: 236 LKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLR 295
++ V+I + T N + ++ A LL G V + +++PGS +
Sbjct: 284 IEVDQVMIGSCT---NGAFEDLLPAAKLL------EGREVHKDTEFAVAPGSKQALELIA 334
Query: 296 ESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIH 355
+ + G + + C CIG P D + + S NRNFEGR
Sbjct: 335 QEGALAEFLAAGANFLEAACGACIGIG---FAPASDGVS--------LRSFNRNFEGRAG 383
Query: 356 PNTRANYLASPLLVIAYALAGTVDIDFEK--EPIGTNKQGAPVFLRDIWPSRSEIHAVEK 413
YLASP A A+AG + ID + G + E
Sbjct: 384 IEDAKVYLASPETATAAAIAGEI-IDPRDLADDEGDLE----------AIG------FEM 426
Query: 414 QHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDR 473
P + I E + + IK P FD +G D+
Sbjct: 427 GEKFPGGYDAADIDI----------IPKEEREDDDIIKGPNIKPLPEFDPLGADI----- 471
Query: 474 VIEQARVLLLLGDSVTTDHISPAGS 498
+ L++ D++TTDHI PAG+
Sbjct: 472 ---EGETALIMEDNITTDHIIPAGA 493
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
Reviewed.
Length = 418
Score = 103 bits (260), Expect = 7e-24
Identities = 93/329 (28%), Positives = 136/329 (41%), Gaps = 73/329 (22%)
Query: 59 AEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVG---KFVEFFG 115
A A+ G+ +PE I +EGKL VT+ D++L I + +GV G K +EF G
Sbjct: 143 AAAMATGK-TWFKVPETIKVVLEGKLPPGVTAKDVILHI---IGDIGVDGATYKALEFTG 198
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
++ LS+ +R T++NM E GA G F D+ +LEYLK+ + W+S ++A
Sbjct: 199 ETIEALSMDERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRD----YKPWKSDEDAE 254
Query: 176 LVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYT 235
L +EP N P+ E EG
Sbjct: 255 YEEVYEIDLSK--LEPQVAAPHLP---------DNVKPVS------------EVEGTK-- 289
Query: 236 LKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEA----GLSVAPYIKTSLSPGSGVVT 291
V I SCTN G L + A G VAP ++ + P S +
Sbjct: 290 -----VDQVFIGSCTN----------GRLEDLRIAAEILKGRKVAPGVRLIVIPASQKI- 333
Query: 292 YYLR--ESQVIEPLNQLGFDVVGFGCMTCIGNS-GPLDPPIVDAIEKNELVVAGVLSGNR 348
YL+ + +IE G V C C+G G L P E+ ++ + NR
Sbjct: 334 -YLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLAP--------GEVCLS---TTNR 381
Query: 349 NFEGRI-HPNTRANYLASPLLVIAYALAG 376
NF+GR+ P + YLASP + A A+ G
Sbjct: 382 NFKGRMGSPESEV-YLASPAVAAASAVTG 409
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 104 bits (261), Expect = 2e-23
Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGV---VGKFVE 112
G++ M G L +P+V+G K+ GKL +V++ D++L + LR+L V VGK +E
Sbjct: 137 GLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILEL---LRRLTVKGGVGKIIE 193
Query: 113 FFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQT 156
+FGPGV LS+ +RATI+NM E GAT FP D+ + E+LK
Sbjct: 194 YFGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLKAQ 237
Score = 77.5 bits (192), Expect = 6e-15
Identities = 65/262 (24%), Positives = 95/262 (36%), Gaps = 69/262 (26%)
Query: 244 AAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPL 303
I SCTN+S +M A +L K V +S+ ++PGS V L + L
Sbjct: 292 VLIGSCTNSSYEDLMRAASILKGKKVHPKVSLV------INPGSRQVLEMLARDGALADL 345
Query: 304 NQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRI-HPNTRANY 362
G ++ C CIG P N + + NRNF GR + + Y
Sbjct: 346 IAAGARILENACGPCIGMGQ--APA-----TGN----VSLRTFNRNFPGRSGTKDAQV-Y 393
Query: 363 LASPLLVIAYALAG------TVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHV 416
LASP A AL G T+ ++ + P +G V I + VE
Sbjct: 394 LASPETAAASALTGVITDPRTLALENGEYPKLEEPEGFAVDDAGIIAPAEDGSDVE---- 449
Query: 417 IPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIE 476
+ G N IK P + + +
Sbjct: 450 -----------VVRGPN---------------------IKPLPLLEPLPDLL-------- 469
Query: 477 QARVLLLLGDSVTTDHISPAGS 498
+ +VLL +GD++TTDHI PAG+
Sbjct: 470 EGKVLLKVGDNITTDHIMPAGA 491
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. These homologs are
described by a separate model of subfamily (rather than
equivalog) homology type (TIGR01343). This model along
with TIGR00170 describe clades which consist only of
LeuC sequences. Here, the genes from Pyrococcus
furiosus, Clostridium acetobutylicum, Thermotoga
maritima and others are gene clustered with related
genes from the leucine biosynthesis pathway [Amino acid
biosynthesis, Pyruvate family].
Length = 419
Score = 101 bits (254), Expect = 4e-23
Identities = 107/365 (29%), Positives = 156/365 (42%), Gaps = 70/365 (19%)
Query: 20 PSDLVIDHSVQVDFSRSGVSSHGVVVTALALHARDPGIEAEAV-MLGQAISLLLPEVIGY 78
P DL+I G SH AL A G AV M +PE I +
Sbjct: 113 PGDLII-----------GADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKF 161
Query: 79 KIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGA 138
++GKL +VT DL+L I + G + K +EF G G+KELS+ DR TI+NM E GA
Sbjct: 162 VLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGA 221
Query: 139 TVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFD 198
G FPVD+ ++EY K K + +++ ++A+ V L +EP Q+ F
Sbjct: 222 KTGIFPVDEITIEYEKGRGKR----EEKIYKADEDAKYVRVIEIDLSE--LEP--QVAF- 272
Query: 199 VVGFGCMTCIGNSGPLDP----PIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSN 254
P P I + G +K VVI SCTN
Sbjct: 273 --------------PHLPENTKDISEAGKE----------EIKIDQVVIG---SCTNGRL 305
Query: 255 PSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFG 314
+ L A +L G +VAP ++ + PGS V + ++E + G V
Sbjct: 306 EDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPT 359
Query: 315 CMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRI-HPNTRANYLASPLLVIAYA 373
C C+G + + + E ++ + NRNF GR+ HP + YLASP + A A
Sbjct: 360 CGPCLGGH-------MGILAEGERAIS---TTNRNFVGRMGHPKSEV-YLASPAVAAASA 408
Query: 374 LAGTV 378
+ G +
Sbjct: 409 IKGYI 413
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Bacterial Aconitase-like catalytic domain.
Aconitase (aconitate hydratase or citrate hydrolyase)
catalyzes the reversible isomerization of citrate and
isocitrate as part of the TCA cycle. Cis-aconitate is
formed as an intermediate product during the course of
the reaction. This distinct subfamily is found only in
bacteria and Archaea. Its exact characteristics are not
known.
Length = 380
Score = 93.7 bits (233), Expect = 1e-20
Identities = 39/99 (39%), Positives = 62/99 (62%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
G++ M G+ + +P+V+G ++ G+L +VT+ D++L + + L G VGK E+ G
Sbjct: 108 GLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTG 167
Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLK 154
PGV LS+ +RATI+NM E GAT FP D+ + E+L
Sbjct: 168 PGVATLSVPERATITNMGAELGATTSIFPSDERTREFLA 206
Score = 53.2 bits (128), Expect = 2e-07
Identities = 43/138 (31%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 241 VVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVI 300
V AI SCTN+S +M A +L G V P++ ++PGS V L + +
Sbjct: 260 VDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGAL 313
Query: 301 EPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRA 360
L G ++ C CIG P + V + NRNFEGR
Sbjct: 314 ADLLAAGARILESACGPCIGMGQ---APPTGGVS--------VRTFNRNFEGRSGTKDDL 362
Query: 361 NYLASPLLVIAYALAGTV 378
YLASP + A AL G +
Sbjct: 363 VYLASPEVAAAAALTGVI 380
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit.
Members of this family are 3-isopropylmalate
dehydratase, large subunit, or the large subunit domain
of single-chain forms. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures. All are dehydratases (EC 4.2.1.-) and bind a
Fe-4S iron-sulfur cluster. 3-isopropylmalate dehydratase
is split into large (leuC) and small (leuD) chains in
eubacteria. Several pairs of archaeal proteins resemble
the leuC and leuD pair in length and sequence but even
more closely resemble the respective domains of
homoaconitase, and their identity is uncertain. These
homologs are now described by a separate model of
subfamily (rather than equivalog) homology type, and the
priors and cutoffs for this model have been changed to
focus this equivalog family more narrowly [Amino acid
biosynthesis, Pyruvate family].
Length = 465
Score = 91.1 bits (226), Expect = 1e-19
Identities = 101/366 (27%), Positives = 155/366 (42%), Gaps = 53/366 (14%)
Query: 36 SGVSSHGVVVTALALHARDPGI---EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD 92
S S+HG ALA GI E E V+ Q + + + +++GKL+ +T+ D
Sbjct: 129 SHTSTHGAF-GALAF-----GIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKD 182
Query: 93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEY 152
++L I G G +EF G +++LS+ R T+ NM E GA G D+ + EY
Sbjct: 183 IILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEY 242
Query: 153 LKQTSKSPGCTK----VSRWRSGQNARLVGF-KGYGLKSQVIEPLNQLGFDVVGFGCMTC 207
K +P + V+ W++ + F L++ I P G + G +
Sbjct: 243 CKGRPHAPKGKEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNP---GQVLP 299
Query: 208 IGNSGPLDP-----PIDKLGATGQFEFEGKTYTLKHGSVVI--AAITSCTNTSNPSVMLG 260
+ + P DP P+DK A + G + + I SCTN+
Sbjct: 300 VNSEVP-DPESFADPVDKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIED---- 354
Query: 261 AGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGF-----GC 315
L A AV G VA +K + PGSG+V + E L+++ F GF GC
Sbjct: 355 --LRAAAAVIKGRKVADNVKALVVPGSGLV----KLQAEKEGLDKI-FIEAGFEWREPGC 407
Query: 316 MTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALA 375
C+G ++ + E+ + NRNFEGR R +L SP + A A+
Sbjct: 408 SMCLG----MNNDRLPEGER------CASTSNRNFEGRQGRGGR-THLVSPAMAAAAAIH 456
Query: 376 GT-VDI 380
G VDI
Sbjct: 457 GHFVDI 462
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit.
This subfamily is a subset of the larger HacA family
(Homoaconitate hydratase family, TIGR01343) and is most
closely related to the 3-isopropylmalate dehydratase,
large subunits which form TIGR00170. This subfamily
includes the members of TIGR01343 which are gene
clustered with other genes of leucine biosynthesis. The
rest of the subfamily includes mainly archaeal species
which exhibit two hits to this model. In these cases it
is possible that one or the other of the hits does not
have a 3-isopropylmalate dehydratase activity but rather
one of the other related aconitase-like activities.
Length = 412
Score = 84.4 bits (209), Expect = 2e-17
Identities = 84/319 (26%), Positives = 125/319 (39%), Gaps = 53/319 (16%)
Query: 59 AEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGV 118
A A+ G+ L +PE I +EGK + VT+ D+ L I L G +EFFG +
Sbjct: 139 AIALATGK-TWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPI 197
Query: 119 KELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVG 178
+ +S+ +R T+ NM E GA G D+ + EYLK + ++ R G
Sbjct: 198 EAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLK--KRRGYEFRILRPDPGAKY---- 251
Query: 179 FKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKH 238
+ +EPL + V N P+ + EG
Sbjct: 252 DDEIEIDLSDLEPLVAVPHSV---------DNVRPVS------------DVEGT------ 284
Query: 239 GSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQ 298
+ I SCTN + + A +L G V P ++ + P S V E
Sbjct: 285 -EIDQVFIGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIVVPASRKVYERALEEG 337
Query: 299 VIEPLNQLGFDVVGFGCMTCIG-NSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPN 357
+I L + G + GC C+G + G L E+ V+ + NRNF GR+
Sbjct: 338 IILTLIRAGAIICPPGCGPCLGRHMGVLGD--------GEVCVS---TTNRNFRGRMGSP 386
Query: 358 TRANYLASPLLVIAYALAG 376
YLASP A A+ G
Sbjct: 387 DAEIYLASPATAAASAVEG 405
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein. This
model represents a subfamily of proteins consisting of
aconitase, homoaconitase, 3-isopropylmalate dehydratase,
and uncharacterized proteins. The majority of the
members of this family have been designated as
3-isopropylmalate dehydratase large subunit (LeuC) in
microbial genome annotation, but the only characterized
member is Thermus thermophilus homoaconitase, an enzyme
of a non-aspartate pathway of Lys biosynthesis.
Length = 412
Score = 83.6 bits (207), Expect = 3e-17
Identities = 83/314 (26%), Positives = 134/314 (42%), Gaps = 66/314 (21%)
Query: 73 PEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVG---KFVEFFGPGVKELSIADRATI 129
PE + + GKL+ VT+ D++L + + Q+GV G +EF G +K +++ +R T+
Sbjct: 153 PESMKVTLTGKLNPGVTAKDVILEV---IGQIGVDGATYMAMEFHGETIKNMTMEERMTL 209
Query: 130 SNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGF-KGYGLKSQV 188
+NM E G G D+ + YLK+ K P +R ++ + K + +
Sbjct: 210 ANMAIEAGGKTGIIEPDEKTRAYLKERYKEP-------FRVYKSDEDAEYAKEVEIDASQ 262
Query: 189 IEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITS 248
+EP+ + N P+ E EG V I S
Sbjct: 263 LEPV---------VAAPHNVDNVHPVS------------EVEGIE-------VDQVFIGS 294
Query: 249 CTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQ--VIEPLNQL 306
CTN + + A +L + VAP ++ + P S V YL+ + +IE +
Sbjct: 295 CTNGRIEDLRVAAKILKGR------KVAPDVRLIVIPASRAV--YLQALKEGLIEIFVKA 346
Query: 307 GFDVVGFGCMTCIG-NSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRI-HPNTRANYLA 364
G V GC C+G + G L P E+ ++ + NRNF+GR+ PN YLA
Sbjct: 347 GAVVSTPGCGPCLGRHQGVLAP--------GEVCIS---TSNRNFKGRMGDPNAEI-YLA 394
Query: 365 SPLLVIAYALAGTV 378
SP A A+ G +
Sbjct: 395 SPATAAASAVKGRI 408
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
Validated.
Length = 466
Score = 81.7 bits (203), Expect = 2e-16
Identities = 104/382 (27%), Positives = 155/382 (40%), Gaps = 91/382 (23%)
Query: 39 SSHGVVVTALALHARDPGI---EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVL 95
S+HG ALA GI E E V+ Q + P+ + +++GKL VT+ D++L
Sbjct: 132 STHGAF-GALAF-----GIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIIL 185
Query: 96 TITKHLRQLGV---VGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEY 152
I + ++G G +EF G ++ LS+ R TI NM E GA G D+ + EY
Sbjct: 186 AI---IGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEY 242
Query: 153 LKQTSKSPGCTK----VSRWR---SGQNA---RLVGFKGYGLKSQV---IEPLNQLGFDV 199
LK +P V+ W+ S ++A ++V ++ QV P G V
Sbjct: 243 LKGRPFAPKGEDWDKAVAYWKTLKSDEDAVFDKVVTLDAADIEPQVTWGTNP----G-QV 297
Query: 200 VGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHG------SVVIAAITSCTNTS 253
+ + + P+ + A + G LK G + I SCTN
Sbjct: 298 ISID--GKVPDPEDFADPVKRASAERALAYMG----LKPGTPITDIKIDKVFIGSCTN-- 349
Query: 254 NPSVMLGAG----LLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFD 309
L A AV G VAP ++ + PGSG+V ++Q G D
Sbjct: 350 --------SRIEDLRAAAAVVKGRKVAPGVRALVVPGSGLV-----KAQAEA----EGLD 392
Query: 310 VV----GF-----GCMTCIG-NSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTR 359
+ GF GC C+ N D + E + + NRNFEGR R
Sbjct: 393 KIFIEAGFEWREPGCSMCLAMNP--------DKLPPGERCAS---TSNRNFEGRQGKGGR 441
Query: 360 ANYLASPLLVIAYALAGT-VDI 380
+L SP + A A+ G VD+
Sbjct: 442 -THLVSPAMAAAAAITGHFVDV 462
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized
proteins of the Aconitase family. Homoaconitase
catalytic domain. Homoaconitase and other
uncharacterized proteins of the Aconitase family.
Homoaconitase is part of an unusual lysine biosynthesis
pathway found only in filamentous fungi, in which lysine
is synthesized via the alpha-aminoadipate pathway. In
this pathway, homoaconitase catalyzes the conversion of
cis-homoaconitic acid into homoisocitric acid. The
reaction mechanism is believed to be similar to that of
other aconitases.
Length = 363
Score = 78.0 bits (192), Expect = 1e-15
Identities = 79/309 (25%), Positives = 128/309 (41%), Gaps = 71/309 (22%)
Query: 72 LPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISN 131
+P V +++G+L + VT D+++ + + V+ +EF G G+ LS+ R TI+N
Sbjct: 124 IPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIAN 183
Query: 132 MCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEP 191
M E+GA G FP D L L ++ SP + SG N+ V L++Q I+
Sbjct: 184 MTTEWGALSGLFPTDAKHL-ILDLSTLSP-------YVSGPNSVKVSTPLKELEAQNIK- 234
Query: 192 LNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTN 251
I+K A + SCTN
Sbjct: 235 --------------------------INK-----------------------AYLVSCTN 245
Query: 252 TSNPSVMLGAGLL-AKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDV 310
+ + A ++ KK + VAP ++ ++ S V ++ + L + G
Sbjct: 246 SRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGATP 305
Query: 311 VGFGCMTCIG-NSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLV 369
+ GC CIG G L+P V G+ + NRNF+GR+ YLASP +V
Sbjct: 306 LPAGCGPCIGLGQGLLEPGEV-----------GISATNRNFKGRMGSTEALAYLASPAVV 354
Query: 370 IAYALAGTV 378
A A++G +
Sbjct: 355 AASAISGKI 363
>gnl|CDD|201399 pfam00694, Aconitase_C, Aconitase C-terminal domain. Members of
this family usually also match to pfam00330. This domain
undergoes conformational change in the enzyme mechanism.
Length = 131
Score = 64.2 bits (157), Expect = 2e-12
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 505 AAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLV-SKPGPKTVHFPSLEEG 563
KFL +G+ PDF S GT ANI + N L KT H P+ E
Sbjct: 1 MPKFLTLRGVCTPDFISNVDTDLIIPKQFLGTIANIGLGNILFDGWRANKTTHLPTGENP 60
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase. Homoaconitase is known only
as a fungal enzyme from two species, where it is part of
an unusual lysine biosynthesis pathway. Because This
model is based on just two sequences from a narrow
taxonomic range, it may not recognize distant orthologs,
should any exist. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures, but 3-isopropylmalate dehydratase is split
into large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble leuC and
leuD over their lengths but are even closer to the
respective domains of homoaconitase, and their identity
is uncertain [Amino acid biosynthesis, Aspartate
family].
Length = 712
Score = 69.7 bits (170), Expect = 2e-12
Identities = 80/324 (24%), Positives = 131/324 (40%), Gaps = 45/324 (13%)
Query: 72 LPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPG--VKELSIADRATI 129
+P V + +G+L V+ D+++ + + V+ +EF G + L I R TI
Sbjct: 157 IPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTI 216
Query: 130 SNMCPEYGATVGFFPVDQNSLEYL--KQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQ 187
+NM E+GA G FP+D+ +++L K T + G N F L+ +
Sbjct: 217 ANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPF----INPAAERFTHPALEEK 272
Query: 188 VIEPLN---------QLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKH 238
PL +L D+ NS + P+ L A +
Sbjct: 273 AEIPLKADKDAHYAKELFIDLASLSHYVSGPNSVKVANPLKDLEA-------------QD 319
Query: 239 GSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGL---SVAPYIKTSLSPGSGVVTYYLR 295
+ A + SCTN+ + A + + A + G +AP ++ ++ S
Sbjct: 320 IKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAE 379
Query: 296 ESQVIEPLNQLGFDVVGFGCMTCIG-NSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRI 354
+ E L + G + GC CIG +G L+P V G+ + NRNF+GR+
Sbjct: 380 GNGAWEKLLEAGAIPLPAGCGPCIGLGAGLLEPGEV-----------GISASNRNFKGRM 428
Query: 355 HPNTRANYLASPLLVIAYALAGTV 378
YLASP +V A AL G +
Sbjct: 429 GSKDAKAYLASPAVVAASALLGKI 452
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
Provisional.
Length = 471
Score = 59.9 bits (146), Expect = 2e-09
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 36 SGVSSHGVVVTALALHARDPGI---EAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD 92
S +++G AL A GI E E V+ Q + P+ + +++G+L VT+ D
Sbjct: 131 SHTTTYG------ALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKD 184
Query: 93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEY 152
L+L + + G G +EF G ++ LS+ R T+ NM E GA G D+ + +Y
Sbjct: 185 LILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDY 244
Query: 153 LKQTSKSP 160
L+ ++P
Sbjct: 245 LRGRPRAP 252
Score = 52.2 bits (126), Expect = 4e-07
Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 33/139 (23%)
Query: 246 ITSCTNTSNPSVMLGAG----LLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIE 301
I SCTN G L A AV G VAP ++ + PGSG V R E
Sbjct: 346 IGSCTN----------GRIEDLRAAAAVLRGRKVAPGVRAMVVPGSGAV----RRQAEAE 391
Query: 302 PLNQL----GFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPN 357
L ++ GF+ GC C+ + + P E + + NRNFEGR P
Sbjct: 392 GLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GERCAS---TTNRNFEGRQGPG 441
Query: 358 TRANYLASPLLVIAYALAG 376
R +L SP +V A A+AG
Sbjct: 442 ART-HLMSPAMVAAAAVAG 459
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional.
Length = 751
Score = 40.0 bits (94), Expect = 0.003
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 63 MLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVV-GKFVEFFGPGVKEL 121
+L + P V+ + GK + V D+ L I + + G V K +EF GPGV L
Sbjct: 173 LLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSAL 232
Query: 122 SIADRATISNMCPE 135
S R + M E
Sbjct: 233 STDFRNGVDVMTTE 246
>gnl|CDD|235509 PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional.
Length = 148
Score = 32.4 bits (75), Expect = 0.24
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 181 GYGLKSQVIEPLNQLGFDVVGFGC 204
G+ LK ++IE L +LG +V+ G
Sbjct: 11 GFELKEEIIEHLEELGHEVIDLGP 34
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.5 bits (77), Expect = 0.39
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 42/144 (29%)
Query: 274 SVAPYIKTSLSPGS---------GVVTYYLRESQVIEPLNQL---------GFDVVGFGC 315
+ A YI T LS + ++ Y + Q +EP + G + +G G
Sbjct: 768 AAARYIFTKLSKITRYIFPEEDDPILDYLEDDGQSVEPFYYVPIIPMVLVNGAEGIGTGF 827
Query: 316 MTCIGNSGPLDPPIVDAIEKNELVVAGVLSGN---------RNFEGRIHPNTRANYLASP 366
T I N PLD I+D + + L+G R F+G I N + +++
Sbjct: 828 STSIPNYNPLD--IIDNLRR-------RLNGEEVRPLVPWYRGFKGTIERNPKGKFISKG 878
Query: 367 LLVIAYALAGTVDIDFEKE-PIGT 389
+ GTV+I E PIG
Sbjct: 879 --IYEKVPDGTVEI---TELPIGK 897
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 33.1 bits (76), Expect = 0.41
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 73 PEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLG-VVGKFVEFFG 115
PE++G+K+EG +S TS +++I R +G ++ +F E G
Sbjct: 185 PELLGFKLEGTMS---TSVAYLVSIGVAPRDIGPMLTRFPEILG 225
>gnl|CDD|238811 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain.
Aconitase (aconitate hydratase or citrate hydrolyase)
catalyzes the reversible isomerization of citrate and
isocitrate as part of the TCA cycle. Cis-aconitate is
formed as an intermediate product during the course of
the reaction. This is the aconitase-like swivel domain,
which is believed to undergo swivelling conformational
change in the enzyme mechanism. This distinct subfamily
is found only in bacteria and archea. Its exact
characteristics are not known.
Length = 121
Score = 30.5 bits (69), Expect = 0.75
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 484 LGDSVTTDHISPAGS 498
+GD++TTDHI PAG+
Sbjct: 2 VGDNITTDHIMPAGA 16
>gnl|CDD|223770 COG0698, RpiB, Ribose 5-phosphate isomerase RpiB [Carbohydrate
transport and metabolism].
Length = 151
Score = 29.1 bits (66), Expect = 3.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 181 GYGLKSQVIEPLNQLGFDVVGFGC 204
GY LK +I+ L G++V+ FG
Sbjct: 11 GYELKEIIIDHLKSKGYEVIDFGT 34
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 29.8 bits (68), Expect = 3.8
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 106 VVGKFVEFFGPGVKELSIADRATISNMCPEYGATVG 141
V+ V FGPGV +A A I GA VG
Sbjct: 276 VIEPNV-VFGPGVT---VASGAVIHAFSHLEGAHVG 307
>gnl|CDD|238236 cd00404, Aconitase_swivel, Aconitase swivel domain. Aconitase
(aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. This is the aconitase swivel domain, which
undergoes swivelling conformational change in the enzyme
mechanism. The aconitase family contains the following
proteins: - Iron-responsive element binding protein
(IRE-BP). IRE-BP is a cytosolic protein that binds to
iron-responsive elements (IREs). IREs are stem-loop
structures found in the 5'UTR of ferritin, and delta
aminolevulinic acid synthase mRNAs, and in the 3'UTR of
transferrin receptor mRNA. IRE-BP also express aconitase
activity. - 3-isopropylmalate dehydratase
(isopropylmalate isomerase), the enzyme that catalyzes
the second step in the biosynthesis of leucine. -
Homoaconitase (homoaconitate hydratase), an enzyme that
participates in the alpha-aminoadipate pathway of lysine
biosynthesis and that converts cis-homoaconitate into
homoisocitric acid.
Length = 88
Score = 27.8 bits (62), Expect = 4.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 483 LLGDSVTTDHISPAG 497
+ ++TTDHISPAG
Sbjct: 1 KVAGNITTDHISPAG 15
>gnl|CDD|238900 cd01919, PEPCK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP or GTP) for
the phosphoryl transfer, and has a strict requirement
for divalent metal ions for activity. PEPCK's separate
into two phylogenetic groups based on their nucleotide
substrate specificity (the ATP-, and GTP-dependent
groups).
Length = 515
Score = 29.5 bits (66), Expect = 5.1
Identities = 35/126 (27%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 319 IGNSGPLDPPIVDAIEKNELV--VAGVLSGNRNFEG-RIHPNTRANYLASPLLVIAYALA 375
IG S +P I AI KN + VA G +FE HPNTR Y AS + +I A
Sbjct: 266 IGLSVKTEPNIYKAIRKNAIFENVAETSDGGIDFEDISAHPNTRVCYPASHIPIIDAAWE 325
Query: 376 GTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSW 435
I E T V P + + V A A E G
Sbjct: 326 SAGHI--EGVIFLTRDAFGVV------PPVYRLTWQQGVFVFAAGRTAATAGTEAGHKGK 377
Query: 436 RALQAP 441
+ +P
Sbjct: 378 IPMFSP 383
>gnl|CDD|202262 pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of
proteins contains the sugar isomerase enzymes ribose
5-phosphate isomerase B (rpiB), galactose isomerase
subunit A (LacA) and galactose isomerase subunit B
(LacB).
Length = 140
Score = 28.2 bits (64), Expect = 6.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 181 GYGLKSQVIEPLNQLGFDVVGFGCMTC 207
G+ LK + E L G++V+ G +
Sbjct: 10 GFELKEAIKEYLKAKGYEVIDVGTYSG 36
>gnl|CDD|192060 pfam08539, HbrB, HbrB-like. HbrB is involved hyphal growth and
polarity.
Length = 158
Score = 28.5 bits (64), Expect = 6.7
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 168 WRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGP 213
W S +A L FKG GL+ IE LN+L V F C+ P
Sbjct: 9 WNSLCSAVLPLFKGEGLRKLPIEDLNEL----VRFHIKLCLQRRTP 50
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 28.9 bits (65), Expect = 7.1
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 279 IKTSLSPGSGVVTYYLRESQVIEPL----NQLGFDVVGFGCMTCIGNSGPLDPP-IVDAI 333
+K L G V+T + + V PL Q+G ++ C N G + P I AI
Sbjct: 79 LKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCD----NEGLISPERIKRAI 134
Query: 334 EKNELVVAGVLSGNRNFEGRIHPNTRANYLA----SPLLVIAYALAGTVDIDFEKEPI 387
+ N ++ V+S N G I P LA ++ A AG + ID + I
Sbjct: 135 KTNTKLI--VVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAI 190
>gnl|CDD|147018 pfam04656, Pox_E6, Pox virus E6 protein. Family of pox virus E6
proteins.
Length = 566
Score = 28.9 bits (65), Expect = 7.8
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)
Query: 46 TALALHARDP-----GI--EAEAVMLGQAISLLLPEVIGYKIEGKLSQ-------YVTST 91
T L L+ DP GI + V + SL ++ Y ++GKL+ Y
Sbjct: 421 TYLYLNEDDPYVIYKGILVKLSDVPSSRRFSLFSKSILKYYLDGKLANLGLVLDDY--KG 478
Query: 92 DLVLTITKHLRQLGVVGKFVEF 113
D++L I HL+ + V FV F
Sbjct: 479 DIILKIISHLKCVEDVTTFVRF 500
>gnl|CDD|238392 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase (PheRS) beta
chain core domain. PheRS belongs to class II
aminoacyl-tRNA synthetases (aaRS) based upon its
structure. While class II aaRSs generally aminoacylate
the 3'-OH ribose of the appropriate tRNA, PheRS is an
exception in that it attaches the amino acid at the
2'-OH group, like class I aaRSs. PheRS is an alpha-2/
beta-2 tetramer. While the alpha chain contains a
catalytic core domain, the beta chain has a
non-catalytic core domain.
Length = 198
Score = 28.0 bits (63), Expect = 9.5
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 335 KNELVVAGVLSGNRNFEGRIHPNTRANY--LASPLLVIAYALAGTVDIDFEKEP 386
+ E +A +LSGNR E ++ L + AL V+ + E+
Sbjct: 96 EEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGIIVEFELEELD 149
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,358,633
Number of extensions: 2946244
Number of successful extensions: 2644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2602
Number of HSP's successfully gapped: 93
Length of query: 566
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 464
Effective length of database: 6,413,494
Effective search space: 2975861216
Effective search space used: 2975861216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)