RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5344
(566 letters)
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
1, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 629
Score = 375 bits (964), Expect = e-124
Identities = 247/429 (57%), Positives = 293/429 (68%), Gaps = 26/429 (6%)
Query: 37 GVSSHGVVVTALALHARD-PGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVL 95
G SH ++ L + GIEAEAVMLGQ IS++LP+VIGY++ GK VTSTD+VL
Sbjct: 202 GTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVL 261
Query: 96 TITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQ 155
TITKHLRQ+GVVGKFVEFFGPGV +LSIADRATI+NMCPEYGAT FFPVD+ S+ YL Q
Sbjct: 262 TITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQ 321
Query: 156 TSKSPGCTKVSRWRSGQNA---------------RLVGFKGYGLKSQVIEPLNQLGFDVV 200
T + K + ++V + P D V
Sbjct: 322 TGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRP--QDKV 379
Query: 201 GFG--------CMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNT 252
C+ + F ++ +TL HGSVVIAAITSCTNT
Sbjct: 380 AVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNT 439
Query: 253 SNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVG 312
SNPSVMLGAGLLAKKAV+AGL+V PYIKTSLSPGSGVVTYYL+ES V+ L+QLGFDVVG
Sbjct: 440 SNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVG 499
Query: 313 FGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAY 372
+GCMTCIGNSGPL P+V+AI + +LV GVLSGNRNFEGR+HPNTRANYLASP LVIAY
Sbjct: 500 YGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAY 559
Query: 373 ALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGS 432
A+AGT+ IDFEKEP+G N +G VFL+DIWP+R EI AVE+Q+VIP MF+EVY +IE +
Sbjct: 560 AIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVN 619
Query: 433 NSWRALQAP 441
SW AL P
Sbjct: 620 ESWNALATP 628
Score = 65.5 bits (159), Expect = 9e-12
Identities = 28/36 (77%), Positives = 33/36 (91%)
Query: 1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRS 36
MRDAVK L GDP+KINP+CP+DLVIDHS+QVDF+R
Sbjct: 99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRR 134
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 231 bits (589), Expect = 1e-69
Identities = 107/457 (23%), Positives = 166/457 (36%), Gaps = 88/457 (19%)
Query: 10 GDPQKINPICPSDLVIDHSVQVDFSR---------------------------------- 35
G P+ P S + DH ++
Sbjct: 86 GLPKVAVP---STIHCDHLIEAQLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGS 142
Query: 36 --------SGVSSHGVVVTALALHARDPG-----------IEAEAVMLGQAISLLLPEVI 76
+ GV++ H + G +A VM G L P+VI
Sbjct: 143 GIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVI 202
Query: 77 GYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEY 136
G K+ G LS + + D++L + L G G VE+ GPGV +S ATI NM E
Sbjct: 203 GVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEI 262
Query: 137 GATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLG 196
GAT FP + +YL +T ++ ++ Q+IE
Sbjct: 263 GATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCH-----YDQLIE------ 311
Query: 197 FDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPS 256
++ +GP P + A E + + + + I SCTN+S
Sbjct: 312 INLSELKPHI----NGPFTPDLAHPVAEVGSVAEKEGW---PLDIRVGLIGSCTNSSYED 364
Query: 257 VMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCM 316
+ A +AK+A+ GL + +++PGS + + + L +G V+ C
Sbjct: 365 MGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACG 421
Query: 317 TCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRAN-YLASPLLVIAYALA 375
CIG I+K E V S NRNF GR N + ++ SP +V A A+A
Sbjct: 422 PCIGQWDR------KDIKKGEKNTI-VTSYNRNFTGRNDANPETHAFVTSPEIVTALAIA 474
Query: 376 GTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVE 412
GT+ + E + + T K G L P E+ E
Sbjct: 475 GTLKFNPETDFL-TGKDGKKFKLE--APDADELPRAE 508
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 164 bits (415), Expect = 4e-45
Identities = 50/367 (13%), Positives = 107/367 (29%), Gaps = 50/367 (13%)
Query: 56 GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFF- 114
+ L +PE + + +GK+ +T DLV I + + G++ +
Sbjct: 140 SGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKK 199
Query: 115 ---------GPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSP---GC 162
G+ +L + +++ E A +++ + ++
Sbjct: 200 NIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMI 259
Query: 163 TKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLG 222
+ R R+ G + + +++E + V + I L P D
Sbjct: 260 AEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEP-ILCAPNDPDD 318
Query: 223 ATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTS 282
A +G+ + I SC + +
Sbjct: 319 ARPLSAVQGE-------KIDEVFIGSCMTNIGHFRAA-------GKLLDAHKGQLPTRLW 364
Query: 283 LSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAG 342
++P + + L E + G + GC C+GN +
Sbjct: 365 VAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGAT-----------V 413
Query: 343 VLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIW 402
V + RNF R+ +LAS L AL G + + ++ +
Sbjct: 414 VSTSTRNFPNRLGTGANV-FLASAELAAVAALIGKL----------PTPEEYQTYVAQVD 462
Query: 403 PSRSEIH 409
+ + +
Sbjct: 463 KTAVDTY 469
>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein
1, C-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 259
Score = 150 bits (380), Expect = 3e-42
Identities = 69/116 (59%), Positives = 90/116 (77%), Gaps = 1/116 (0%)
Query: 444 QLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTS 503
+L+ W+ STYIK PPFF+ + D+ + I A VLL LGDSVTTDHISPAG+IAR S
Sbjct: 2 KLFFWNSKSTYIKSPPFFENLTLDL-QPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNS 60
Query: 504 AAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPS 559
AA++L ++GL+P +FNSYGSRRGND VM RGTFANIR++N+ ++K P+T+H PS
Sbjct: 61 PAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQAPQTIHLPS 116
>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 226
Score = 59.3 bits (143), Expect = 1e-10
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 448 WDLSSTYI-KRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAA 506
+S + PF G+D +E ++L+ + TTDHIS AG
Sbjct: 3 VSPTSQRLQLLEPFDKWDGKD-------LEDLQILIKVKGKCTTDHISAAGPW------- 48
Query: 507 KFLASKGLSPPDFNSYGSRRGNDDVMVRGTFAN 539
L +G N+ N + + N
Sbjct: 49 --LKFRGHLDNISNNLLIGAINSENRKANSVRN 79
>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 162
Score = 33.0 bits (75), Expect = 0.050
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 475 IEQARVLLLLGDSVTTDHISPAG 497
I +V GD ++TD I+P
Sbjct: 2 ITTGKVWKF-GDDISTDEITPGR 23
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B,
RpiB {Escherichia coli [TaxId: 562]}
Length = 159
Score = 28.7 bits (64), Expect = 1.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 181 GYGLKSQVIEPLNQLGFDVVGFGC 204
G+ LK +++ L + G +V+ G
Sbjct: 25 GFILKHEIVAHLVERGVEVIDKGT 48
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide
dismutase, N-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 27.1 bits (60), Expect = 1.3
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 266 KKAVEAGLSVAPYIKT---SLSPGSGVVTYYLRESQVIEPLNQLGFDVV 311
++A L P I + + V + S +I L G D +
Sbjct: 20 VNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAI 68
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase
B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 156
Score = 28.4 bits (63), Expect = 1.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 181 GYGLKSQVIEPLNQLGFDVVGFGCMTCIGN 210
GY LK ++IE L Q G + + G + +
Sbjct: 12 GYELKQRIIEHLKQTGHEPIDCGALRYDAD 41
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 29.0 bits (64), Expect = 1.5
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 12/48 (25%)
Query: 283 LSPGSGVVTYYLRESQVIEPLNQLGFDVV------------GFGCMTC 318
L+ GVV Y R + L G V+ CM+
Sbjct: 353 LAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNARCMSM 400
>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli
[TaxId: 562]}
Length = 416
Score = 29.0 bits (65), Expect = 1.7
Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 23/137 (16%)
Query: 422 REVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVL 481
EV + N + A E +L+ S + F MG + Q +
Sbjct: 207 DEVISEKLNP---AHHIDAVESKLFGIGAESYTVGSNEF--YMGYATSR------QTALC 255
Query: 482 LLLGDSVTTDHISPAGSIA-RTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANI 540
L G H P I+ + SAA ++ L + R + D +V
Sbjct: 256 LDAG------HFHPTEVISDKISAAMLYVPQLLL---HVSR--PVRWDSDHVVLLDDETQ 304
Query: 541 RIVNKLVSKPGPKTVHF 557
I +++V VH
Sbjct: 305 AIASEIVRHDLFDRVHI 321
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase
{Thermotoga maritima [TaxId: 2336]}
Length = 145
Score = 28.0 bits (62), Expect = 2.1
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 181 GYGLKSQVIEPLNQLGFDVVGFGC 204
+ LK +V L G +V G
Sbjct: 13 AFELKEKVKNYLLGKGIEVEDHGT 36
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 365
Score = 27.7 bits (61), Expect = 3.7
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 274 SVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVV 311
++AP ++ S+ + ++ L QLGFD +
Sbjct: 19 AMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKI 56
>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 360
Score = 27.7 bits (60), Expect = 3.9
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 12/48 (25%)
Query: 283 LSPGSGVVTYYLRESQVIEPLNQLGFDVV------------GFGCMTC 318
L V E + + +LG + GF C TC
Sbjct: 300 LMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTC 347
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit,
C-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 312
Score = 27.6 bits (61), Expect = 4.4
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 274 SVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVV 311
AP ++ +L G+ + +++ L +LGF
Sbjct: 19 MPAPAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHC 56
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 25.5 bits (56), Expect = 4.4
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 266 KKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVG 312
K + I SL V L ++E + + G +V
Sbjct: 22 NKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRS 68
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 27.4 bits (60), Expect = 5.1
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 12/48 (25%)
Query: 283 LSPGSGVVTYYLRESQVIEPLNQLGFDVV------------GFGCMTC 318
+ GVV Y R + L + G +V+ G CMTC
Sbjct: 357 VCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTC 404
>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC
component FruA, middle domain {Bacillus subtilis [TaxId:
1423]}
Length = 103
Score = 25.8 bits (57), Expect = 5.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 243 IAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSV 275
I A+T+C + M A L +KA E G+ +
Sbjct: 2 ILAVTACPTGIAHTFM-AADALKEKAKELGVEI 33
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type
ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Length = 72
Score = 25.1 bits (55), Expect = 6.3
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 267 KAVEAGLSVAPYIKT---SLSPGSGVVTY---YLRESQVIEPLNQLGFDVV 311
+E GL P + +L+ + V Y + + E + +LG+ VV
Sbjct: 22 ARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVV 72
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 335
Score = 26.7 bits (59), Expect = 7.6
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 362 YLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIW 402
A+ VIA+ A VDID +EP+ G+ ++ +I
Sbjct: 33 LAATICFVIAFIAAPPVDIDGIREPV----SGSLLYGNNII 69
>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli
[TaxId: 562]}
Length = 161
Score = 25.8 bits (56), Expect = 9.2
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 203 GCMTCIGNSGPLDPPIDK------------LGATGQFEFEGKTYTLKHGSVVI 243
G N G LD ID+ + G + +G+ + + G +++
Sbjct: 16 GLTPIEAN-GYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILL 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,112,311
Number of extensions: 100870
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 25
Length of query: 566
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,171,896
Effective search space: 557822496
Effective search space used: 557822496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)