BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5349
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 108/180 (60%), Gaps = 3/180 (1%)
Query: 26 AVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITD 85
AVKEL+EN++DA AT+I + L + G+DLIEV D+G G+ ++ + TSKI + D
Sbjct: 38 AVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFAD 97
Query: 86 LDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTV 145
L + ++GFRGEAL++LC + +V+++T S V + F H G++ P P GTTV
Sbjct: 98 LTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTV 157
Query: 146 SVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPV 205
SV+ LF LPVR + + + +E K+ +V+ +I +RV+ T N+ ++ PV
Sbjct: 158 SVQQLFSTLPVRHKEF--QRNIKKEYAKMVQVLHAYCIISAGIRVSCT-NQLGQGKRQPV 214
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 108/180 (60%), Gaps = 3/180 (1%)
Query: 26 AVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITD 85
AVKEL+EN++DA AT+I + L + G+DLIEV D+G G+ ++ + TSKI + D
Sbjct: 38 AVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFAD 97
Query: 86 LDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTV 145
L + ++GFRGEAL++LC + +V+++T S V + F H G++ P P GTTV
Sbjct: 98 LTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTV 157
Query: 146 SVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPV 205
SV+ LF LPVR + + + +E K+ +V+ +I +RV+ T N+ ++ PV
Sbjct: 158 SVQQLFSTLPVRHKEF--QRNIKKEYAKMVQVLHAYCIISAGIRVSCT-NQLGQGKRQPV 214
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 3/180 (1%)
Query: 26 AVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITD 85
AVKEL+EN++DA AT+I + L + G+DLIEV D+G G+ ++ + TSKI + D
Sbjct: 38 AVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFAD 97
Query: 86 LDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTV 145
L + ++GFRGEAL++LC + +V+++T S V + F H G++ P P GTTV
Sbjct: 98 LTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLXFDHNGKIIQKTPYPRPRGTTV 157
Query: 146 SVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPV 205
SV+ LF LPVR + + + +E K +V+ +I +RV+ T N+ ++ PV
Sbjct: 158 SVQQLFSTLPVRHKEF--QRNIKKEYAKXVQVLHAYCIISAGIRVSCT-NQLGQGKRQPV 214
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens
Length = 348
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 26 AVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITD 85
A+KE+IEN +DAK+TSIQ+ + GL LI+++D+G+GI +D+ ++C+ TTSK+ D
Sbjct: 32 AIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFED 91
Query: 86 LDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTV 145
L S+S+YGFRGEAL ++ + V++TTKT A +S +P GT +
Sbjct: 92 LASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQI 151
Query: 146 SVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSL 183
+V++LF+N+ R++ L + + EE K+ VV S+
Sbjct: 152 TVEDLFYNIATRRKALKNPS---EEYGKILEVVGRYSV 186
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 5/206 (2%)
Query: 1 MSINILPXXXXXXXXXXXXXXXXXXAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDG 60
M I +LP VKEL+EN++DA AT I I++ G LI ++D+G
Sbjct: 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 62
Query: 61 SGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVA 120
GI ++ L TSKI + DL+++ S GFRGEAL ++ + +++T++T A
Sbjct: 63 CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 122
Query: 121 -SMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVK 179
Y VT +P+ P GTT+ V +LF+N P R+++L ++ E ++ +++
Sbjct: 123 WQAYAEGRDMNVT-VKPAAHPVGTTLEVLDLFYNTPARRKFLRTEK---TEFNHIDEIIR 178
Query: 180 CLSLIHCKLRVTLTHNKCVIWQKNPV 205
++L + + L+HN ++ Q V
Sbjct: 179 RIALARFDVTINLSHNGKIVRQYRAV 204
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 5/206 (2%)
Query: 1 MSINILPXXXXXXXXXXXXXXXXXXAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDG 60
M I +LP VKEL+EN++DA AT I I++ G LI ++D+G
Sbjct: 7 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 66
Query: 61 SGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVA 120
GI ++ L TSKI + DL+++ S GFRGEAL ++ + +++T++T A
Sbjct: 67 CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 126
Query: 121 -SMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVK 179
Y VT +P+ P GTT+ V +LF+N P R+++L ++ E ++ +++
Sbjct: 127 WQAYAEGRDMNVT-VKPAAHPVGTTLEVLDLFYNTPARRKFLRTEK---TEFNHIDEIIR 182
Query: 180 CLSLIHCKLRVTLTHNKCVIWQKNPV 205
++L + + L+HN ++ Q V
Sbjct: 183 RIALARFDVTINLSHNGKIVRQYRAV 208
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 5/206 (2%)
Query: 1 MSINILPXXXXXXXXXXXXXXXXXXAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDG 60
M I +LP VKEL+EN++DA AT I I++ G LI ++D+G
Sbjct: 4 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 63
Query: 61 SGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVA 120
GI ++ L TSKI + DL+++ S GFRGEAL ++ + +++T++T A
Sbjct: 64 CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 123
Query: 121 -SMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVK 179
Y VT +P+ P GTT+ V +LF+N P R+++L ++ E ++ +++
Sbjct: 124 WQAYAEGRDMNVT-VKPAAHPVGTTLEVLDLFYNTPARRKFLRTEK---TEFNHIDEIIR 179
Query: 180 CLSLIHCKLRVTLTHNKCVIWQKNPV 205
++L + + L+HN ++ Q V
Sbjct: 180 RIALARFDVTINLSHNGKIVRQYRAV 205
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 5/206 (2%)
Query: 1 MSINILPXXXXXXXXXXXXXXXXXXAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDG 60
M I +LP VKEL+EN++DA AT I I++ G LI ++D+G
Sbjct: 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 62
Query: 61 SGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVA 120
GI ++ L TSKI + DL+++ S GFRGEAL ++ + +++T++T A
Sbjct: 63 CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALPSISSVSRLTLTSRTAEQQEA 122
Query: 121 -SMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVK 179
Y VT +P+ P GTT+ V +LF+N P R+++L ++ E ++ +++
Sbjct: 123 WQAYAEGRDMNVT-VKPAAHPVGTTLEVLDLFYNTPARRKFLRTEK---TEFNHIDEIIR 178
Query: 180 CLSLIHCKLRVTLTHNKCVIWQKNPV 205
++L + + L+HN ++ Q V
Sbjct: 179 RIALARFDVTINLSHNGKIVRQYRAV 204
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 26 AVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITD 85
AVKEL++N+IDA A I+I + GL+ IE D+G GI + + TSKI D
Sbjct: 29 AVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQD 88
Query: 86 LDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTV 145
+ + + GFRGEAL++LC I ++SV T T S P A ++ G +TS + GTTV
Sbjct: 89 VAKVQTLGFRGEALSSLCGIAKLSVIT-TTSPPKADKLEYDMVGHITSKTTTSRNKGTTV 147
Query: 146 SVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIH 185
V LFHNLPVR++ S + + KCL++I
Sbjct: 148 LVSQLFHNLPVRQKEFSKTFK--------RQFTKCLTVIQ 179
>pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
pdb|2ZBK|D Chain D, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
pdb|2ZBK|F Chain F, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
pdb|2ZBK|H Chain H, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
Length = 530
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 27 VKELIENAIDAKAT-------SIQINLMNQGLDLIEVK--DDGSGIPTQDVP 69
V+ELIEN++DA I I+L++ + +V D+G GIP Q+VP
Sbjct: 36 VRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVP 87
>pdb|1Z59|A Chain A, Topoisomerase Vi-B, Adp-Bound Monomer Form
pdb|1Z5C|A Chain A, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
pdb|1Z5C|B Chain B, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
Length = 469
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 27 VKELIENAIDAKAT-------SIQINLMNQGLDLIEVK--DDGSGIPTQDVP 69
V+ELIEN++DA I I+L++ + +V D+G GIP Q+VP
Sbjct: 35 VRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVP 86
>pdb|1Z5A|A Chain A, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5A|B Chain B, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5B|A Chain A, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|1Z5B|B Chain B, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|2HKJ|A Chain A, Topoisomerase Vi-B Bound To Radicicol
Length = 469
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 27 VKELIENAIDAKAT-------SIQINLMNQGLDLIEVK--DDGSGIPTQDVP 69
V+ELIEN++DA I I+L++ + +V D+G GIP Q+VP
Sbjct: 35 VRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVP 86
>pdb|1MX0|A Chain A, Structure Of Topoisomerase Subunit
pdb|1MX0|B Chain B, Structure Of Topoisomerase Subunit
pdb|1MX0|C Chain C, Structure Of Topoisomerase Subunit
pdb|1MX0|D Chain D, Structure Of Topoisomerase Subunit
pdb|1MX0|E Chain E, Structure Of Topoisomerase Subunit
pdb|1MX0|F Chain F, Structure Of Topoisomerase Subunit
Length = 472
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 27 VKELIENAIDAKAT-------SIQINLMNQGLDLIEVK--DDGSGIPTQDVP 69
V+ELIEN++DA I I+L++ + +V D+G GIP Q+VP
Sbjct: 38 VRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVP 89
>pdb|1MU5|A Chain A, Structure Of Topoisomerase Subunit
Length = 471
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 27 VKELIENAIDAKAT-------SIQINLMNQGLDLIEVK--DDGSGIPTQDVP 69
V+ELIEN++DA I I+L++ + +V D+G GIP Q+VP
Sbjct: 37 VRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVP 88
>pdb|4B6C|A Chain A, Structure Of The M. Smegmatis Gyrb Atpase Domain In
Complex With An Aminopyrazinamide
pdb|4B6C|B Chain B, Structure Of The M. Smegmatis Gyrb Atpase Domain In
Complex With An Aminopyrazinamide
Length = 196
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 29 ELIENAIDAK----ATSIQINLMNQGLDLIEVKDDGSGIPTQ 66
E+++NA+D AT + + + G +EV+DDG GIP +
Sbjct: 41 EVVDNAVDEAMAGFATRVDVKIHADGS--VEVRDDGRGIPVE 80
>pdb|3FK4|A Chain A, Crystal Structure Of Rubisco-Like Protein From Bacillus
Cereus Atcc 14579
pdb|3FK4|B Chain B, Crystal Structure Of Rubisco-Like Protein From Bacillus
Cereus Atcc 14579
Length = 414
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 27 VKELIENAIDAKATSIQINLMNQGLDLIE--VKDDGSGIPTQDVPLICQAATTSKITDIT 84
+KE + A+ A A + N+ GLD+++ +DD +P P + A + SK+ ++
Sbjct: 222 LKENAKRAVQAGADILLFNVFAYGLDVLQSLAEDDEIPVPIMAHPAVSGAYSASKLYGVS 281
>pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HXZ|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 390
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 27 VKELIENAID----AKATSIQINLMNQGLDLIEVKDDGSGIPTQDVP 69
++E+I+N++D A+ I I L + IEV DDG G+P P
Sbjct: 35 IQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVDIHP 79
>pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit
pdb|3LPS|A Chain A, Crystal Structure Of Pare
Length = 408
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 27 VKELIENAID----AKATSIQINLMNQGLDLIEVKDDGSGIPTQDVP 69
+E+I+N++D A I++ L G EV DDG G+P P
Sbjct: 55 AQEVIDNSVDEALAGHAKQIEVTLYKDGS--CEVSDDGRGMPVDIHP 99
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 161 LSSKNRMLEELRKVERVVK 179
L +K ++EELRKV RVVK
Sbjct: 198 LHTKKNLMEELRKVHRVVK 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,378,027
Number of Sequences: 62578
Number of extensions: 199436
Number of successful extensions: 507
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 24
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)