Query psy5349
Match_columns 213
No_of_seqs 159 out of 2638
Neff 8.4
Searched_HMMs 46136
Date Sat Aug 17 00:19:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0323 MutL DNA mismatch repa 100.0 1.8E-47 3.8E-52 349.7 19.2 206 1-210 1-211 (638)
2 PRK00095 mutL DNA mismatch rep 100.0 3.3E-44 7.1E-49 328.8 20.5 208 1-212 1-208 (617)
3 KOG1979|consensus 100.0 1.8E-44 3.9E-49 314.8 16.2 204 3-210 8-214 (694)
4 TIGR00585 mutl DNA mismatch re 100.0 6.8E-42 1.5E-46 291.3 20.4 206 1-210 1-209 (312)
5 KOG1978|consensus 100.0 2E-40 4.3E-45 295.2 14.8 208 3-212 1-213 (672)
6 KOG1977|consensus 100.0 1.3E-34 2.8E-39 257.7 10.7 207 3-212 2-213 (1142)
7 TIGR01055 parE_Gneg DNA topois 99.9 7.7E-25 1.7E-29 200.5 14.3 184 3-204 9-216 (625)
8 PRK14868 DNA topoisomerase VI 99.9 5E-24 1.1E-28 194.5 16.3 164 20-204 44-227 (795)
9 PRK05559 DNA topoisomerase IV 99.9 1.9E-23 4.1E-28 191.9 14.9 184 3-204 13-221 (631)
10 TIGR01052 top6b DNA topoisomer 99.9 2.5E-23 5.5E-28 184.2 14.6 175 14-206 20-215 (488)
11 TIGR01059 gyrB DNA gyrase, B s 99.9 1.7E-22 3.6E-27 186.7 15.7 185 3-205 6-217 (654)
12 PRK14939 gyrB DNA gyrase subun 99.9 1.4E-22 3E-27 187.7 13.6 185 3-205 12-222 (756)
13 PRK05644 gyrB DNA gyrase subun 99.9 2.2E-22 4.8E-27 184.9 14.9 185 3-205 13-224 (638)
14 smart00433 TOP2c Topoisomerase 99.9 1.3E-22 2.9E-27 185.4 12.1 158 23-196 2-176 (594)
15 PRK04184 DNA topoisomerase VI 99.9 4.1E-21 9E-26 171.8 16.9 167 21-206 35-224 (535)
16 PRK14867 DNA topoisomerase VI 99.9 3.1E-21 6.7E-26 175.7 14.8 166 19-204 33-225 (659)
17 PRK05218 heat shock protein 90 99.9 1.3E-20 2.8E-25 172.9 15.5 182 9-205 14-228 (613)
18 COG1389 DNA topoisomerase VI, 99.8 2.4E-19 5.3E-24 154.5 14.0 176 12-205 26-223 (538)
19 PRK14083 HSP90 family protein; 99.8 3.2E-19 7E-24 162.6 12.5 185 9-206 11-214 (601)
20 COG0326 HtpG Molecular chapero 99.8 6.2E-19 1.3E-23 158.3 11.6 158 16-186 21-203 (623)
21 TIGR01058 parE_Gpos DNA topois 99.8 6.6E-18 1.4E-22 155.1 12.9 186 3-205 10-220 (637)
22 COG0187 GyrB Type IIA topoisom 99.8 1.5E-18 3.2E-23 155.2 7.2 186 3-205 11-224 (635)
23 PTZ00130 heat shock protein 90 99.7 1.3E-17 2.7E-22 154.6 10.8 160 11-184 78-263 (814)
24 PTZ00272 heat shock protein 83 99.7 5.8E-17 1.3E-21 149.6 10.7 157 16-185 19-199 (701)
25 PF13589 HATPase_c_3: Histidin 99.7 8.7E-18 1.9E-22 126.9 3.0 100 23-126 3-106 (137)
26 PTZ00109 DNA gyrase subunit b; 99.7 6.3E-17 1.4E-21 150.6 7.1 182 3-196 105-358 (903)
27 PHA02569 39 DNA topoisomerase 99.6 1.3E-15 2.9E-20 139.2 8.1 160 20-196 43-224 (602)
28 PTZ00108 DNA topoisomerase 2-l 99.5 4.6E-14 9.9E-19 137.4 12.5 163 19-195 54-241 (1388)
29 PLN03237 DNA topoisomerase 2; 99.5 1.7E-13 3.6E-18 133.3 13.0 167 19-196 74-260 (1465)
30 PLN03128 DNA topoisomerase 2; 99.5 2.5E-13 5.3E-18 131.0 13.5 163 19-196 49-235 (1135)
31 PF02518 HATPase_c: Histidine 99.4 4.1E-13 9E-18 97.1 3.8 101 21-148 4-107 (111)
32 COG3290 CitA Signal transducti 99.4 1E-12 2.2E-17 116.5 6.0 105 13-148 418-528 (537)
33 TIGR02938 nifL_nitrog nitrogen 99.3 3.1E-12 6.7E-17 113.4 7.2 97 23-148 388-491 (494)
34 COG5002 VicK Signal transducti 99.3 3.8E-12 8.3E-17 107.4 7.1 102 21-148 341-445 (459)
35 COG4191 Signal transduction hi 99.3 4.4E-12 9.5E-17 113.3 7.2 98 21-148 496-598 (603)
36 KOG0019|consensus 99.3 8.9E-12 1.9E-16 111.1 8.6 180 5-205 45-251 (656)
37 PRK11006 phoR phosphate regulo 99.3 1.3E-11 2.7E-16 109.3 8.5 105 22-157 317-424 (430)
38 PRK09303 adaptive-response sen 99.2 1.5E-11 3.2E-16 107.6 7.5 99 22-148 272-374 (380)
39 PRK10604 sensor protein RstB; 99.2 1.5E-11 3.2E-16 109.1 7.4 100 23-148 320-420 (433)
40 PRK15053 dpiB sensor histidine 99.2 2E-11 4.3E-16 110.9 7.7 98 22-148 432-536 (545)
41 PRK10364 sensor protein ZraS; 99.2 2.9E-11 6.3E-16 107.7 7.8 95 22-148 348-445 (457)
42 PRK10815 sensor protein PhoQ; 99.2 5.1E-11 1.1E-15 107.4 7.6 96 23-148 379-475 (485)
43 COG2205 KdpD Osmosensitive K+ 99.2 7.1E-11 1.5E-15 109.0 8.2 98 23-148 776-876 (890)
44 TIGR01386 cztS_silS_copS heavy 99.1 1.2E-10 2.5E-15 103.0 8.2 100 22-148 353-455 (457)
45 PRK10549 signal transduction h 99.1 1.1E-10 2.4E-15 103.7 7.7 101 22-148 352-455 (466)
46 PRK10755 sensor protein BasS/P 99.1 1.2E-10 2.6E-15 100.3 7.6 96 23-148 248-347 (356)
47 KOG0020|consensus 99.1 3.1E-10 6.7E-15 99.4 9.9 148 22-183 95-272 (785)
48 PRK15347 two component system 99.1 1.3E-10 2.7E-15 111.7 7.9 97 22-148 513-611 (921)
49 PRK09470 cpxA two-component se 99.1 1.5E-10 3.3E-15 102.6 7.7 100 23-148 354-454 (461)
50 PRK11086 sensory histidine kin 99.1 1.7E-10 3.7E-15 104.2 8.0 95 22-148 433-532 (542)
51 PRK09467 envZ osmolarity senso 99.1 1.7E-10 3.6E-15 101.8 7.7 99 22-148 331-430 (435)
52 COG0642 BaeS Signal transducti 99.1 2.9E-10 6.4E-15 94.6 7.3 97 22-148 228-326 (336)
53 PRK11091 aerobic respiration c 99.1 3.7E-10 8E-15 107.0 8.5 88 22-114 398-493 (779)
54 TIGR02916 PEP_his_kin putative 99.1 3.2E-10 6.8E-15 106.2 7.4 95 22-148 579-677 (679)
55 PRK10618 phosphotransfer inter 99.0 4.4E-10 9.6E-15 107.7 8.1 75 22-103 565-644 (894)
56 PRK11100 sensory histidine kin 99.0 6.9E-10 1.5E-14 98.4 8.5 100 22-148 368-470 (475)
57 PRK10490 sensor protein KdpD; 99.0 4.9E-10 1.1E-14 107.8 7.7 99 22-148 778-879 (895)
58 PRK11466 hybrid sensory histid 99.0 6.8E-10 1.5E-14 106.8 7.9 83 22-114 561-650 (914)
59 PRK13837 two-component VirA-li 99.0 7.6E-10 1.7E-14 105.8 7.6 81 22-114 560-663 (828)
60 TIGR02956 TMAO_torS TMAO reduc 99.0 1.7E-09 3.7E-14 104.5 8.4 74 22-103 579-655 (968)
61 PRK10337 sensor protein QseC; 99.0 1.4E-09 3E-14 96.4 7.2 94 23-148 353-448 (449)
62 TIGR02966 phoR_proteo phosphat 98.9 2.4E-09 5.3E-14 90.1 7.8 100 23-148 230-332 (333)
63 TIGR03785 marine_sort_HK prote 98.9 2.3E-09 5E-14 100.8 8.1 102 22-148 597-701 (703)
64 PRK10841 hybrid sensory kinase 98.9 2.4E-09 5.3E-14 103.3 7.7 76 22-103 562-639 (924)
65 PRK09835 sensor kinase CusS; P 98.9 3.9E-09 8.5E-14 94.1 8.0 100 22-148 375-477 (482)
66 PRK11360 sensory histidine kin 98.9 3.6E-09 7.9E-14 95.9 6.8 95 22-148 500-598 (607)
67 PRK11107 hybrid sensory histid 98.9 5.8E-09 1.3E-13 100.2 8.2 76 22-103 408-490 (919)
68 PRK13557 histidine kinase; Pro 98.8 5.5E-09 1.2E-13 94.1 6.7 82 23-114 278-382 (540)
69 COG3852 NtrB Signal transducti 98.8 6E-09 1.3E-13 87.0 6.1 99 22-158 241-356 (363)
70 PRK09959 hybrid sensory histid 98.8 6.3E-09 1.4E-13 102.9 7.4 74 22-103 828-908 (1197)
71 PRK11073 glnL nitrogen regulat 98.8 5.6E-09 1.2E-13 89.4 6.1 94 22-148 237-344 (348)
72 PRK10547 chemotaxis protein Ch 98.7 2.2E-08 4.9E-13 93.0 6.8 70 26-102 389-494 (670)
73 COG5000 NtrY Signal transducti 98.7 2.9E-08 6.3E-13 89.4 6.6 95 23-148 601-705 (712)
74 cd00075 HATPase_c Histidine ki 98.7 8.6E-08 1.9E-12 66.2 7.6 73 23-103 1-77 (103)
75 smart00387 HATPase_c Histidine 98.7 1.5E-07 3.2E-12 66.1 8.1 75 22-103 5-82 (111)
76 TIGR01925 spIIAB anti-sigma F 98.6 1.8E-07 3.8E-12 70.1 8.4 71 20-102 37-113 (137)
77 COG0643 CheA Chemotaxis protei 98.6 6.9E-08 1.5E-12 90.3 5.6 99 23-148 433-570 (716)
78 PRK11644 sensory histidine kin 98.6 2E-07 4.4E-12 84.4 7.8 79 23-148 411-491 (495)
79 COG4585 Signal transduction hi 98.5 2.8E-07 6E-12 80.2 7.3 83 21-148 278-362 (365)
80 PRK10600 nitrate/nitrite senso 98.5 4.7E-07 1E-11 83.2 7.7 82 23-148 470-553 (569)
81 COG4251 Bacteriophytochrome (l 98.5 2.5E-07 5.4E-12 83.7 5.6 104 22-158 636-743 (750)
82 PRK13560 hypothetical protein; 98.4 3.2E-07 6.8E-12 86.6 6.4 82 23-148 712-800 (807)
83 PRK03660 anti-sigma F factor; 98.4 3.3E-06 7.2E-11 63.8 9.6 71 20-102 37-113 (146)
84 PRK04069 serine-protein kinase 98.4 6.3E-07 1.4E-11 69.3 5.2 84 20-111 40-130 (161)
85 TIGR01924 rsbW_low_gc serine-p 98.3 2.5E-06 5.4E-11 65.9 6.5 86 19-112 39-131 (159)
86 COG4192 Signal transduction hi 98.2 2.7E-06 5.8E-11 74.8 5.9 60 22-81 564-628 (673)
87 PRK10935 nitrate/nitrite senso 98.1 7.3E-06 1.6E-10 74.8 7.7 82 23-148 472-556 (565)
88 PF13581 HATPase_c_2: Histidin 98.0 1.9E-05 4.2E-10 57.9 6.5 77 21-110 30-113 (125)
89 COG3850 NarQ Signal transducti 98.0 1.4E-05 3E-10 71.5 6.4 45 22-66 481-527 (574)
90 PRK13559 hypothetical protein; 98.0 1.4E-05 3.1E-10 68.8 6.0 82 22-148 267-356 (361)
91 COG2972 Predicted signal trans 97.9 2.9E-05 6.2E-10 69.7 7.0 52 21-72 349-407 (456)
92 COG3851 UhpB Signal transducti 97.9 3.4E-05 7.3E-10 66.2 6.4 46 21-66 409-456 (497)
93 KOG0355|consensus 97.8 7.1E-05 1.5E-09 69.9 8.2 134 18-162 49-200 (842)
94 KOG0787|consensus 97.7 7.9E-05 1.7E-09 64.0 5.8 84 19-102 256-351 (414)
95 COG4564 Signal transduction hi 97.5 0.00021 4.5E-09 60.7 5.6 85 21-148 358-444 (459)
96 COG3275 LytS Putative regulato 97.4 0.00015 3.2E-09 64.3 4.1 44 23-66 457-507 (557)
97 COG2172 RsbW Anti-sigma regula 97.4 0.0015 3.2E-08 49.8 8.7 84 19-114 37-128 (146)
98 COG3920 Signal transduction hi 97.1 0.0014 3E-08 53.3 6.0 45 22-66 122-174 (221)
99 PF14501 HATPase_c_5: GHKL dom 95.3 0.025 5.4E-07 39.8 3.8 41 22-62 5-51 (100)
100 COG5381 Uncharacterized protei 80.4 4.3 9.4E-05 30.8 4.8 49 23-71 64-114 (184)
101 COG2865 Predicted transcriptio 77.9 3.4 7.3E-05 37.4 4.2 39 20-61 268-311 (467)
102 PF07492 Trehalase_Ca-bi: Neut 67.0 5.1 0.00011 21.7 1.7 13 49-61 11-23 (30)
103 KOG1845|consensus 49.1 17 0.00036 35.1 3.1 84 24-113 148-245 (775)
104 PF07205 DUF1413: Domain of un 44.3 69 0.0015 20.7 4.7 49 139-194 11-59 (70)
105 PF12890 DHOase: Dihydro-orota 41.8 21 0.00045 26.8 2.0 43 27-69 22-68 (142)
106 PF02184 HAT: HAT (Half-A-TPR) 38.1 27 0.00058 19.3 1.6 20 170-189 2-21 (32)
107 PF08861 DUF1828: Domain of un 31.2 58 0.0013 22.2 2.8 25 36-61 5-29 (90)
108 KOG3938|consensus 28.9 57 0.0012 27.4 2.8 24 40-64 128-151 (334)
109 KOG1845|consensus 28.6 28 0.00061 33.6 1.1 20 54-73 2-21 (775)
110 PF03671 Ufm1: Ubiquitin fold 24.5 64 0.0014 21.4 1.9 24 53-76 46-70 (76)
111 smart00557 IG_FLMN Filamin-typ 24.2 1.3E+02 0.0029 20.3 3.7 27 36-62 28-56 (93)
112 PRK14646 hypothetical protein; 23.0 3.4E+02 0.0074 20.6 6.2 51 23-73 5-60 (155)
No 1
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-47 Score=349.68 Aligned_cols=206 Identities=33% Similarity=0.555 Sum_probs=189.7
Q ss_pred Cc-cccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCC
Q psy5349 1 MS-INILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSK 79 (213)
Q Consensus 1 m~-i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk 79 (213)
|+ |+.||+.++++|+||++|.+|+.||+|||+||+||||+.|+|.++.+|...|+|.|||+||+++|++.++.+|+|||
T Consensus 1 M~~Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 1 MPKIRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred CCcceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 88 99999999999999999999999999999999999999999999988887899999999999999999999999999
Q ss_pred cCCcccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEE-EeccCCCCCCeEEEEeccccCchHHH
Q psy5349 80 ITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVT-STQPSHFPNGTTVSVKNLFHNLPVRK 158 (213)
Q Consensus 80 ~~~~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~GT~V~v~~lf~~~p~r~ 158 (213)
..+.+|+..+.++||||++|+|++.+|+++|+||+.....++++... +|.+. ...|...+.||+|.|++||||+|+|+
T Consensus 81 I~~~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~-g~~~~~~~~p~a~~~GTtVeV~dLF~NtPaRr 159 (638)
T COG0323 81 IASLEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAE-GGGMEVTVKPAAHPVGTTVEVRDLFYNTPARR 159 (638)
T ss_pred CCchhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEec-CCcccccccCCCCCCCCEEEehHhhccChHHH
Confidence 99999999999999999999999999999999998887888888886 55544 44466667799999999999999999
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCE---EEEEeCCCCcccc
Q psy5349 159 QYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKC---VIWQKNPVWTVRY 210 (213)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~---~~~~~~~~~~~~~ 210 (213)
||+++. +.++..|.+++++||++||+|+|+|.++|+ ..+..++.++...
T Consensus 160 Kflks~---~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ 211 (638)
T COG0323 160 KFLKSE---KTEFGHITELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEE 211 (638)
T ss_pred Hhhccc---HHHHHHHHHHHHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHH
Confidence 999887 489999999999999999999999999998 7777777776543
No 2
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=3.3e-44 Score=328.83 Aligned_cols=208 Identities=35% Similarity=0.597 Sum_probs=190.2
Q ss_pred CccccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCc
Q psy5349 1 MSINILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKI 80 (213)
Q Consensus 1 m~i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~ 80 (213)
|+|+.||++++++|+||++|.+|.++|+|||+||+||||++|.|.+..+|...|+|.|||+||+.++++.+|.+|+|||.
T Consensus 1 ~~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi 80 (617)
T PRK00095 1 MPIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKI 80 (617)
T ss_pred CCceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCC
Confidence 89999999999999999999999999999999999999999999998777679999999999999999999999999999
Q ss_pred CCcccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHHHH
Q psy5349 81 TDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQY 160 (213)
Q Consensus 81 ~~~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~~~ 160 (213)
...+|+....++|++|+||++++.+|.++|+|++.+...+|.+.+. +|......+....+||+|+|++||+|+|+|+++
T Consensus 81 ~~~~dl~~~~t~GfrGeAL~sI~~vs~l~i~s~~~~~~~~~~~~~~-~G~~~~~~~~~~~~GT~V~v~~LF~n~P~Rrkf 159 (617)
T PRK00095 81 ASLDDLEAIRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYE-GGEIVEVKPAAHPVGTTIEVRDLFFNTPARRKF 159 (617)
T ss_pred CChhHhhccccCCcchhHHHhhhhceEEEEEEecCCCCceEEEEec-CCcCcceecccCCCCCEEEechhhccCcHHHHh
Confidence 9888888889999999999999999999999999877778888875 666544444455799999999999999999999
Q ss_pred hhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCCCcccccc
Q psy5349 161 LSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPVWTVRYLF 212 (213)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~~~~~~~~ 212 (213)
+++. ..++..+.+++++||++||+|+|++.++++.+|++++..+++..+
T Consensus 160 lk~~---~~e~~~i~~~v~~~Al~~p~i~f~l~~~~~~~~~~~~~~~~~~~i 208 (617)
T PRK00095 160 LKSE---KTELGHIDDVVNRLALAHPDVAFTLTHNGKLVLQTRGAGQLLQRL 208 (617)
T ss_pred ccCc---HHHHHHHHHHHHHHhhcCCCcEEEEEECCEEEEEeCCCCCHHHHH
Confidence 8765 378999999999999999999999999999999999888777654
No 3
>KOG1979|consensus
Probab=100.00 E-value=1.8e-44 Score=314.85 Aligned_cols=204 Identities=34% Similarity=0.564 Sum_probs=190.0
Q ss_pred cccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCC
Q psy5349 3 INILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITD 82 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~ 82 (213)
|++||++|+++|+||++|.+|..||+|||+||+||+++.|.|.++++|...++|+|||.||-.+|++.+|++|+|||...
T Consensus 8 IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~k 87 (694)
T KOG1979|consen 8 IRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSKLTK 87 (694)
T ss_pred hhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhhcch
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred cccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEE-EeccCCCCCCeEEEEeccccCchHHHHHh
Q psy5349 83 ITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVT-STQPSHFPNGTTVSVKNLFHNLPVRKQYL 161 (213)
Q Consensus 83 ~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~GT~V~v~~lf~~~p~r~~~~ 161 (213)
++|+...+++||||++|+|++.+++|+|+|++.++..+|+..+. +|.+. .++|..+.+||.|+++|||||+|.|++.+
T Consensus 88 FEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~-DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rrkal 166 (694)
T KOG1979|consen 88 FEDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYR-DGKMIATPKPCAGKQGTIITVEDLFYNMPTRRKAL 166 (694)
T ss_pred hHHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEee-ccccccCCCCccCCCceEEEehHhhccCHHHHHHh
Confidence 99999999999999999999999999999999999999999997 88887 55678889999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC--EEEEEeCCCCcccc
Q psy5349 162 SSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK--CVIWQKNPVWTVRY 210 (213)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~--~~~~~~~~~~~~~~ 210 (213)
++.. .+++++.+++..||+++|.|+|+++..| ..-++++++.+.++
T Consensus 167 ~~~~---EE~~ki~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D 214 (694)
T KOG1979|consen 167 RNHA---EEYRKIMDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSRED 214 (694)
T ss_pred cCcH---HHHHHHHHHHHHHheeCCCcceEEeeccccccccccCCcccccc
Confidence 8875 8999999999999999999999999854 55566666655444
No 4
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.8e-42 Score=291.29 Aligned_cols=206 Identities=38% Similarity=0.634 Sum_probs=180.4
Q ss_pred CccccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCc
Q psy5349 1 MSINILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKI 80 (213)
Q Consensus 1 m~i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~ 80 (213)
|.|++||++++++|+|+++|.++.++|.|||+||+||+|+.|.|.+..++...|+|.|||.||++++++.+|++|+++|.
T Consensus 1 ~~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~ 80 (312)
T TIGR00585 1 MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKI 80 (312)
T ss_pred CcCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCC
Confidence 88999999999999999999999999999999999999999999997766547999999999999999999999999999
Q ss_pred CCcccccccccCCCCchhhhhhhccCeeEEEEee-CCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHHH
Q psy5349 81 TDITDLDSLSSYGFRGEALNALCQIGEVSVTTKT-NSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQ 159 (213)
Q Consensus 81 ~~~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~~ 159 (213)
...++.....++|++|+||++++.+|.++|+|++ .+...++.+.. .++......+...++||+|+|++||+|+|+|++
T Consensus 81 ~~~~~~~~~~~~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~ 159 (312)
T TIGR00585 81 QSFEDLERIETLGFRGEALASISSVSRLTITTKTSAADGLAWQALL-EGGMIEEIKPAPRPVGTTVEVRDLFYNLPVRRK 159 (312)
T ss_pred CChhHhhcccccCccchHHHHHHhhCcEEEEEeecCCCcceEEEEE-CCCcCcccccccCCCccEEEEchhhccCchhhh
Confidence 8777777788999999999999999999999998 66667777763 233233323445679999999999999999999
Q ss_pred HhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCC--CCcccc
Q psy5349 160 YLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNP--VWTVRY 210 (213)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~--~~~~~~ 210 (213)
+++.. +.+++.+++.+++|++.||+|+|.+.++++..+.+++ ..++++
T Consensus 160 ~~~~~---~~~~~~i~~~l~~~al~~p~i~f~l~~~~~~~~~~~~~~~~~~~~ 209 (312)
T TIGR00585 160 FLKSP---KKEFRKILDLLNRYALIHPDVSFSLTHDGKKVLQLSTKPNQSLKE 209 (312)
T ss_pred hccCc---HHHHHHHHHHHHHHhhcCCCeEEEEEECCEEEEEEcCCCCCCHHH
Confidence 76544 5889999999999999999999999999988888876 556665
No 5
>KOG1978|consensus
Probab=100.00 E-value=2e-40 Score=295.25 Aligned_cols=208 Identities=36% Similarity=0.588 Sum_probs=195.2
Q ss_pred cccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCC
Q psy5349 3 INILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITD 82 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~ 82 (213)
|+++|++++.+|++|++|.++..||+|||+||+||||+.|.|.+++.|...|+|.|||+||++.+.+.++..|+|||..+
T Consensus 1 Ik~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~ 80 (672)
T KOG1978|consen 1 IKQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVS 80 (672)
T ss_pred CCCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccc
Confidence 78999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred cccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHHHHhh
Q psy5349 83 ITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQYLS 162 (213)
Q Consensus 83 ~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~~~~~ 162 (213)
+.|+....++||||++|++++++++|+|.|++.....+.+|.+++.|.+....+.+.+.||||.|.+||.++|||++.+.
T Consensus 81 f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~~k~~~ar~~GTTV~v~~LF~tLPVR~kef~ 160 (672)
T KOG1978|consen 81 FADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHIIQKKPVARGRGTTVMVRQLFSTLPVRRKEFQ 160 (672)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCceeeeccccCCCCCEEEHhhhcccCCCchHHhh
Confidence 99999999999999999999999999999999988899999999999999877888899999999999999999987666
Q ss_pred cchhhHHHHHHHHHHHHHHhccCCCeEEEEEE-----CCEEEEEeCCCCcccccc
Q psy5349 163 SKNRMLEELRKVERVVKCLSLIHCKLRVTLTH-----NKCVIWQKNPVWTVRYLF 212 (213)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~-----~~~~~~~~~~~~~~~~~~ 212 (213)
+. .++++.++..++++|++++++|.|.+.+ ++..+|+..+.++++.++
T Consensus 161 r~--~Kref~k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i 213 (672)
T KOG1978|consen 161 RN--IKRKFVKLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINI 213 (672)
T ss_pred cc--hhhhhhhHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHH
Confidence 44 3689999999999999999999998876 469999999999988764
No 6
>KOG1977|consensus
Probab=100.00 E-value=1.3e-34 Score=257.68 Aligned_cols=207 Identities=27% Similarity=0.440 Sum_probs=179.2
Q ss_pred cccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCC
Q psy5349 3 INILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITD 82 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~ 82 (213)
|++||.++.+++++|..+.++.++|+||+.||+||+|+.|.|.+.-. ..++.|.|||.||..++++.++++|+|||...
T Consensus 2 Ik~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~-t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~ 80 (1142)
T KOG1977|consen 2 IKCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNME-TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHS 80 (1142)
T ss_pred ccccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCc-eeEEEEEecCCCccHHHHHHHHhhhhhhhcee
Confidence 89999999999999999999999999999999999999999999433 34899999999999999999999999999998
Q ss_pred cccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEe---ccCCCCCCeEEEEeccccCchHHHH
Q psy5349 83 ITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTST---QPSHFPNGTTVSVKNLFHNLPVRKQ 159 (213)
Q Consensus 83 ~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GT~V~v~~lf~~~p~r~~ 159 (213)
..++....++|++|.+|++++-++.+.|.|+..+...+|.+.....|.-... .......||+|+|.+|||++|||++
T Consensus 81 ~ndl~~~~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lPVRRr 160 (1142)
T KOG1977|consen 81 VNDLENPRTYGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLPVRRR 160 (1142)
T ss_pred ccccccccccccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcchhhhh
Confidence 8888888999999999999999999999999998876665432223332211 1234568999999999999999998
Q ss_pred HhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEEC--CEEEEEeCCCCcccccc
Q psy5349 160 YLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHN--KCVIWQKNPVWTVRYLF 212 (213)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~--~~~~~~~~~~~~~~~~~ 212 (213)
+-...+ +++++++++.+.+++++||.|+|++.+. +..+|+++++.+++..|
T Consensus 161 ~k~~~P--~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eil 213 (1142)
T KOG1977|consen 161 LKCMDP--RKEFEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREIL 213 (1142)
T ss_pred hhcCCH--HHHHHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhh
Confidence 765554 5899999999999999999999999985 68999999988877654
No 7
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.92 E-value=7.7e-25 Score=200.51 Aligned_cols=184 Identities=18% Similarity=0.279 Sum_probs=143.8
Q ss_pred cccCCHHHHHHHhCCCcc--cCHHHHHHHHHHchhh---h-CCCeeEEEEEcCCcceEEEEeCCCCCCccc--------H
Q psy5349 3 INILPQSTIRQITTSQII--TSVSTAVKELIENAID---A-KATSIQINLMNQGLDLIEVKDDGSGIPTQD--------V 68 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i--~~~~~~v~eLi~NA~D---A-~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~--------l 68 (213)
|+.|..--.=+.+.|.|| +++.++|+|||+||+| | +|+.|.|.++.+ ..|+|.|||+|||.++ +
T Consensus 9 i~~L~gle~VRkRPgMYigs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d--~~I~V~DnGrGIp~~~h~~~g~~~~ 86 (625)
T TIGR01055 9 IEVLDGLEPVRKRPGMYTDTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQD--QSIEVFDNGRGMPVDIHPKEGVSAV 86 (625)
T ss_pred ceeecccHHhhcCCCCeeCCCCcceeehhhhhcccchhhcCCCCEEEEEEeCC--CeEEEEecCCccCcccccccCCcHH
Confidence 555555444455677777 4589999999999999 9 599999999766 4999999999999998 8
Q ss_pred HHHH-hhcccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe----ccC-CCCC
Q psy5349 69 PLIC-QAATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST----QPS-HFPN 141 (213)
Q Consensus 69 ~~~~-~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~----~~~-~~~~ 141 (213)
+.+| .+|++||+.+. .+..+.|++|+|+++++++|+ ++|++++.+.. |.+.+. +|....+ .+. ...+
T Consensus 87 e~v~t~lhagsK~~~~---~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~-~G~~~~~~~~i~~~~~~~~ 160 (625)
T TIGR01055 87 EVILTTLHAGGKFSNK---NYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFE-NGAKVTDLISAGTCGKRLT 160 (625)
T ss_pred HHhhhcccccCCCCCC---cceecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEE-CCeEccccccccccCCCCC
Confidence 8777 88999998653 234789999999999999999 99999987764 666665 4544221 122 2358
Q ss_pred CeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeCC
Q psy5349 142 GTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKNP 204 (213)
Q Consensus 142 GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~~ 204 (213)
||+|++. |+| ++|... ..+++.+.++++.+|+.||+++|+|.+.. ...|++++
T Consensus 161 GT~V~F~------PD~-~~F~~~---~~e~~~i~~~l~~lA~lnpgi~~~l~der~~~~~~f~~~~ 216 (625)
T TIGR01055 161 GTSVHFT------PDP-EIFDSL---HFSVSRLYHILRAKAVLCRGVEIEFEDEVNNTKALWNYPD 216 (625)
T ss_pred CeEEEEE------ECH-HHCCCC---ccCHHHHHHHHHHHHhhCCCcEEEEeecCCCceeEEecCc
Confidence 9999985 998 666654 36788899999999999999999999863 23466554
No 8
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.92 E-value=5e-24 Score=194.46 Aligned_cols=164 Identities=22% Similarity=0.326 Sum_probs=126.7
Q ss_pred ccCHHHHHHHHHHchhhhCCC-----eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcc-cCCcCCcccccccccC
Q psy5349 20 ITSVSTAVKELIENAIDAKAT-----SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAAT-TSKITDITDLDSLSSY 92 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~-~sk~~~~~~~~~~~~~ 92 (213)
...+.++|+|||+||+||++. .|.|.+...+. ..|+|.|||+||++++++.+|.+|+ +||+.... .+.
T Consensus 44 ~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~-----~sr 118 (795)
T PRK14868 44 ARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHARE-----QSR 118 (795)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccc-----cCC
Confidence 345889999999999999875 58888876554 3899999999999999999999986 67765422 467
Q ss_pred CCCchhhhhhhccCe------eEEEEeeCCCCceE--EEEEccCC---eE--EEeccCCCCCCeEEEEeccccCchHHHH
Q psy5349 93 GFRGEALNALCQIGE------VSVTTKTNSDPVAS--MYKFSHTG---EV--TSTQPSHFPNGTTVSVKNLFHNLPVRKQ 159 (213)
Q Consensus 93 G~~G~gl~s~~~~s~------v~v~s~~~~~~~~~--~~~~~~~g---~~--~~~~~~~~~~GT~V~v~~lf~~~p~r~~ 159 (213)
|++|+||+++...++ ++|+|+..+...++ .+.++.+. .+ ....+...++||+|.|. ||+|+|.|++
T Consensus 119 G~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~-Lf~N~pAR~k 197 (795)
T PRK14868 119 GQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELE-MEANMRARQQ 197 (795)
T ss_pred CCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEE-EEccCchhhh
Confidence 899999987776664 79999987766664 55554221 22 12224456799999999 9999998754
Q ss_pred HhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCC
Q psy5349 160 YLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNP 204 (213)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~ 204 (213)
+.++++.+|++||+++|+|.+++. .+.+++
T Consensus 198 --------------I~eyl~r~Al~nP~a~f~l~~~~~-~~~~~r 227 (795)
T PRK14868 198 --------------LHDYIKHTAVVNPHARIELREPDE-SLKFER 227 (795)
T ss_pred --------------HHHHHHHHHhhCCCeEEEEEECCE-EEEecc
Confidence 458999999999999999999954 466633
No 9
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.90 E-value=1.9e-23 Score=191.88 Aligned_cols=184 Identities=20% Similarity=0.298 Sum_probs=141.7
Q ss_pred cccCCHHHHHHHhCCCcc-----cCHHHHHHHHHHchhhh----CCCeeEEEEEcCCcceEEEEeCCCCCCcccHHH---
Q psy5349 3 INILPQSTIRQITTSQII-----TSVSTAVKELIENAIDA----KATSIQINLMNQGLDLIEVKDDGSGIPTQDVPL--- 70 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i-----~~~~~~v~eLi~NA~DA----~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~--- 70 (213)
|+.|..--.=+.+.+.+| ..|.++|+|||+||+|+ .++.|.|.+.+++ .|+|.|||+|||.+..+.
T Consensus 13 i~~L~~lE~VrkRP~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg--~I~V~DnGrGIP~~~~~~~~~ 90 (631)
T PRK05559 13 IEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG--SVSVRDNGRGIPVGIHPEEGK 90 (631)
T ss_pred CeeccchHHHhcCCCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC--cEEEEEcCCCCCcccccccCC
Confidence 455554333344445554 57999999999999998 6899999998775 899999999999998876
Q ss_pred -----HHhh-cccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEE----eccCC-
Q psy5349 71 -----ICQA-ATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTS----TQPSH- 138 (213)
Q Consensus 71 -----~~~~-~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~----~~~~~- 138 (213)
+|.. ++++|+... .+..+.|++|+|+++++++|+ ++|+|++.+.. |...+. +|.... ..+..
T Consensus 91 ~~~E~v~t~lhagsKf~~~---~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~--~~~~f~-~G~~~~~l~~~~~~~~ 164 (631)
T PRK05559 91 SGVEVILTKLHAGGKFSNK---AYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKV--YRQRFE-GGDPVGPLEVVGTAGK 164 (631)
T ss_pred cchheeeeeccccCccCCc---cccccCcccccchhhhhhheeeEEEEEEeCCeE--EEEEEE-CCcCccCccccccccC
Confidence 5654 888888642 344788999999999999987 99999987654 566665 454322 11222
Q ss_pred CCCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC-EEEEEeCC
Q psy5349 139 FPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK-CVIWQKNP 204 (213)
Q Consensus 139 ~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~-~~~~~~~~ 204 (213)
..+||+|++. |++++| ... ..+.+.+.++++.+|+.||+++|+|.+++ +..|++++
T Consensus 165 ~~~GT~V~f~------PD~~iF-~~~---~~~~~~i~~~l~~~A~lnpgl~i~l~d~~~~~~f~~~~ 221 (631)
T PRK05559 165 RKTGTRVRFW------PDPKIF-DSP---KFSPERLKERLRSKAFLLPGLTITLNDERERQTFHYEN 221 (631)
T ss_pred CCCCcEEEEE------ECHHHc-CCc---ccCHHHHHHHHHHHHhhCCCeEEEEEeCCceEEEECCc
Confidence 5799999996 998877 433 36778899999999999999999999987 66777664
No 10
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.90 E-value=2.5e-23 Score=184.22 Aligned_cols=175 Identities=21% Similarity=0.301 Sum_probs=133.9
Q ss_pred HhCCCcccCHHHHHHHHHHchhhhCCC-----eeEEEEEcCCc--ceEEEEeCCCCCCcccHHHHHhh-cccCCcCCccc
Q psy5349 14 ITTSQIITSVSTAVKELIENAIDAKAT-----SIQINLMNQGL--DLIEVKDDGSGIPTQDVPLICQA-ATTSKITDITD 85 (213)
Q Consensus 14 i~~~~~i~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~~--~~i~V~DnG~GI~~~~l~~~~~~-~~~sk~~~~~~ 85 (213)
+.-......+.++++|||+||+||++. .|.|.+...+. ..|+|.|||+||++++++.+|.+ ++++|...
T Consensus 20 ~Gf~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~--- 96 (488)
T TIGR01052 20 LGYSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHR--- 96 (488)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccc---
Confidence 334455677999999999999999875 68888865332 37999999999999999999998 56777643
Q ss_pred ccccccCCCCchhhhhhhccCe------eEEEEeeCCCCceEEEEEc-----cCCeEEEeccC--CCCCCeEEEEecccc
Q psy5349 86 LDSLSSYGFRGEALNALCQIGE------VSVTTKTNSDPVASMYKFS-----HTGEVTSTQPS--HFPNGTTVSVKNLFH 152 (213)
Q Consensus 86 ~~~~~~~G~~G~gl~s~~~~s~------v~v~s~~~~~~~~~~~~~~-----~~g~~~~~~~~--~~~~GT~V~v~~lf~ 152 (213)
...+.|++|+||+++..+++ ++|.|+..+...++.+.+. .+|.+....+. ..++||+|+|. |.
T Consensus 97 --~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V~v~--f~ 172 (488)
T TIGR01052 97 --IIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRIELE--FK 172 (488)
T ss_pred --ccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEEEEE--EC
Confidence 23467899999998887775 8999999887777787774 35665443222 22479999999 89
Q ss_pred CchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCCC
Q psy5349 153 NLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPVW 206 (213)
Q Consensus 153 ~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~~ 206 (213)
+.|+|.+ ...+.++|+++|++||+++|+|.+.+...+.+++..
T Consensus 173 ~~~~r~~-----------k~~i~e~l~~~Al~nP~~~i~l~~~~~~~~~f~R~~ 215 (488)
T TIGR01052 173 GVSYRRS-----------KQGVYEYLRRTAVANPHAKIVLVDPDGEIYVFPRST 215 (488)
T ss_pred Cceeecc-----------HHHHHHHHHHHHhhCCCeEEEEEeCCCCEEEeeccc
Confidence 9887721 136779999999999999999998754445555543
No 11
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.89 E-value=1.7e-22 Score=186.67 Aligned_cols=185 Identities=19% Similarity=0.282 Sum_probs=138.3
Q ss_pred cccCCHHHHHHHhCCCcc-----cCHHHHHHHHHHchhh---hC-CCeeEEEEEcCCcceEEEEeCCCCCCcccH-----
Q psy5349 3 INILPQSTIRQITTSQII-----TSVSTAVKELIENAID---AK-ATSIQINLMNQGLDLIEVKDDGSGIPTQDV----- 68 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i-----~~~~~~v~eLi~NA~D---A~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l----- 68 (213)
|+.|..--.=+.+.+.|| ..+.++|+|||+||+| |+ ++.|.|.++++| .|+|.|||+|||.+..
T Consensus 6 i~~L~~lE~vr~RP~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~ki 83 (654)
T TIGR01059 6 IKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDG--SVTVEDNGRGIPVDIHPEEGI 83 (654)
T ss_pred CeEecchHHHhcCCCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeCCC--cEEEEEeCCCcCccccCcCCC
Confidence 666666555556667766 5689999999999999 99 999999998765 6999999999998632
Q ss_pred ---HHHH-hhcccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEE---eccCCCC
Q psy5349 69 ---PLIC-QAATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTS---TQPSHFP 140 (213)
Q Consensus 69 ---~~~~-~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~---~~~~~~~ 140 (213)
+.+| ..++++|+++ ..+..+.|++|+|+++++++|+ ++|+|++.+.. |.+.+. +|.... ..+....
T Consensus 84 ~~~e~i~~~l~ag~kf~~---~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~--~~~~~~-~G~~~~~l~~~~~~~~ 157 (654)
T TIGR01059 84 SAVEVVLTVLHAGGKFDK---DSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI--YRQEFE-RGIPLGPLEVVGETKK 157 (654)
T ss_pred CchHHheeeecccCccCC---CcceecCCccchhHHHHHHhcCeEEEEEEECCeE--EEEEEe-CCCcccCceeccCCCC
Confidence 2233 3466677643 3455688999999999999999 99999987654 666665 555433 2234557
Q ss_pred CCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC-----EEEEEeCCC
Q psy5349 141 NGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK-----CVIWQKNPV 205 (213)
Q Consensus 141 ~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~-----~~~~~~~~~ 205 (213)
.||+|++ ++.|. +|. +. ..+++.+.++++.+|+.||+++|.|.+.. +..|++++.
T Consensus 158 ~GT~V~F----~pdp~--~F~-~~---~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~G 217 (654)
T TIGR01059 158 TGTTVRF----WPDPE--IFE-TT---EFDFDILAKRLRELAFLNSGVKISLEDERDGKGKSVTFHYEGG 217 (654)
T ss_pred CCcEEEE----EEChH--HhC-Cc---ccCHHHHHHHHHHhhccCCCeEEEEEeecCCCCceeEEEcCCc
Confidence 9999994 44444 665 33 36788899999999999999999999753 344665554
No 12
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.89 E-value=1.4e-22 Score=187.66 Aligned_cols=185 Identities=19% Similarity=0.292 Sum_probs=139.3
Q ss_pred cccCCHHHHHHHhCCCcc------cCHHHHHHHHHHchhh---hC-CCeeEEEEEcCCcceEEEEeCCCCCCcccH----
Q psy5349 3 INILPQSTIRQITTSQII------TSVSTAVKELIENAID---AK-ATSIQINLMNQGLDLIEVKDDGSGIPTQDV---- 68 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i------~~~~~~v~eLi~NA~D---A~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l---- 68 (213)
|+.|..--.=+.+.|.|| ..+.++|+|||+||+| || ++.|.|+++.++ +|+|.|||+|||.+.-
T Consensus 12 i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg--sIsV~DnGrGIPvd~h~~~g 89 (756)
T PRK14939 12 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG--SVSVSDNGRGIPTDIHPEEG 89 (756)
T ss_pred CeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCC--eEEEEEcCCcccCCcccccC
Confidence 555555433444555565 3479999999999999 99 899999998765 8999999999998722
Q ss_pred ----HH-HHhhcccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe-c--cCCC
Q psy5349 69 ----PL-ICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST-Q--PSHF 139 (213)
Q Consensus 69 ----~~-~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~-~--~~~~ 139 (213)
+. +...|+++|+.+ +. +..+.|++|+|+++++++|+ ++|++++.+.. |...+. +|....+ . ....
T Consensus 90 ~~~~Elvlt~lhAggKfd~--~~-ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk~--~~q~f~-~G~~~~~l~~~g~~~ 163 (756)
T PRK14939 90 VSAAEVIMTVLHAGGKFDQ--NS-YKVSGGLHGVGVSVVNALSEWLELTIRRDGKI--HEQEFE-HGVPVAPLKVVGETD 163 (756)
T ss_pred CchhhheeeeecccCCCCC--Cc-ccccCCccCccceEeehccCeEEEEEEeCCeE--EEEEEe-cCccccCccccCCcC
Confidence 11 236788899865 33 33488999999999999999 99999987764 666665 4544331 1 1225
Q ss_pred CCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeCCC
Q psy5349 140 PNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKNPV 205 (213)
Q Consensus 140 ~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~~~ 205 (213)
.+||+|++. |++++| ... ..+++.+.+.++.+|..||+++|.|.+.. +..|+++++
T Consensus 164 ~~GT~V~F~------PD~~iF-~~~---~~~~~~i~~rl~elA~lnpgl~i~l~der~~~~~~f~~egG 222 (756)
T PRK14939 164 KTGTEVRFW------PSPEIF-ENT---EFDYDILAKRLRELAFLNSGVRIRLKDERDGKEEEFHYEGG 222 (756)
T ss_pred CCCcEEEEE------ECHHHc-CCc---ccCHHHHHHHHHHHhhcCCCCEEEEeccCCCceeEEEeCCh
Confidence 689999996 999888 433 36788899999999999999999999864 345666543
No 13
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.89 E-value=2.2e-22 Score=184.92 Aligned_cols=185 Identities=19% Similarity=0.280 Sum_probs=139.3
Q ss_pred cccCCHHHHHHHhCCCccc-----CHHHHHHHHHHchhh---hC-CCeeEEEEEcCCcceEEEEeCCCCCCcccH-----
Q psy5349 3 INILPQSTIRQITTSQIIT-----SVSTAVKELIENAID---AK-ATSIQINLMNQGLDLIEVKDDGSGIPTQDV----- 68 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i~-----~~~~~v~eLi~NA~D---A~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l----- 68 (213)
|+.|..--.=+.+.+.||- .+.++|+|||+||+| |+ |+.|.|.++.+| .|+|.|||+|||.+..
T Consensus 13 i~~L~~lE~Vr~RPgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~ki 90 (638)
T PRK05644 13 IQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG--SITVTDNGRGIPVDIHPKTGK 90 (638)
T ss_pred CeEecchHHHhcCCCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC--cEEEEEeCccccCCccCCCCC
Confidence 4555554334445555653 468999999999999 99 999999998765 8999999999998643
Q ss_pred ---HHHH-hhcccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe-cc--CCCC
Q psy5349 69 ---PLIC-QAATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST-QP--SHFP 140 (213)
Q Consensus 69 ---~~~~-~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~ 140 (213)
+.+| ..++++|+++ ..+..+.|++|+|+++++++|+ ++|+|++.+. .+...+. +|....+ .+ ....
T Consensus 91 ~~~e~i~~~lhag~kfd~---~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~-~G~~~~~~~~~~~~~~ 164 (638)
T PRK05644 91 PAVEVVLTVLHAGGKFGG---GGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYE-RGVPVTPLEVIGETDE 164 (638)
T ss_pred CchHHheeeecccCccCC---CcccccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEE-CCeEccCccccCCcCC
Confidence 2343 3467777744 3455688999999999999999 9999998765 5777776 4655422 11 2256
Q ss_pred CCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC-----EEEEEeCCC
Q psy5349 141 NGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK-----CVIWQKNPV 205 (213)
Q Consensus 141 ~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~-----~~~~~~~~~ 205 (213)
.||+|++ +|++++| ... ..+++.+.++++.+|..||+++|.|.+.. ...|+++++
T Consensus 165 ~GT~I~F------~Pd~~~F-~~~---~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~G 224 (638)
T PRK05644 165 TGTTVTF------KPDPEIF-ETT---EFDYDTLATRLRELAFLNKGLKITLTDEREGEEKEETFHYEGG 224 (638)
T ss_pred CCcEEEE------EECHHHc-CCc---ccCHHHHHHHHHHHHhhCCCcEEEEEeccCCCcceeEEEcCCC
Confidence 8999996 4999887 444 36788899999999999999999999864 345666543
No 14
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.88 E-value=1.3e-22 Score=185.40 Aligned_cols=158 Identities=21% Similarity=0.339 Sum_probs=126.0
Q ss_pred HHHHHHHHHHchhhhC----CCeeEEEEEcCCcceEEEEeCCCCCCcccHH--------HHHh-hcccCCcCCccccccc
Q psy5349 23 VSTAVKELIENAIDAK----ATSIQINLMNQGLDLIEVKDDGSGIPTQDVP--------LICQ-AATTSKITDITDLDSL 89 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~----a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~--------~~~~-~~~~sk~~~~~~~~~~ 89 (213)
+.++|+|||+||+|++ |+.|.|.+++++ .|+|.|||+|||.+..+ .++. .++++|++ +..+.
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd---~~~~k 76 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFD---DDAYK 76 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEeCCC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCC---CCCcc
Confidence 4578999999999998 999999998776 99999999999976543 3443 45666754 34566
Q ss_pred ccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe---ccCCCCCCeEEEEeccccCchHHHHHhhcch
Q psy5349 90 SSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST---QPSHFPNGTTVSVKNLFHNLPVRKQYLSSKN 165 (213)
Q Consensus 90 ~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GT~V~v~~lf~~~p~r~~~~~~~~ 165 (213)
.+.|++|+|+++++++|. ++|+|++.+.. +.+.+..+|....+ .+....+||+|++ +|++++|....
T Consensus 77 ~s~G~~G~Gls~vnalS~~l~v~~~~~g~~--~~~~~~~~G~~~~~~~~~~~~~~~GT~V~F------~Pd~~~F~~~~- 147 (594)
T smart00433 77 VSGGLHGVGASVVNALSTEFEVEVARDGKE--YKQSFSNNGKPLSEPKIIGDTKKDGTKVTF------KPDLEIFGMTT- 147 (594)
T ss_pred ccCCcccchHHHHHHhcCceEEEEEeCCcE--EEEEEeCCCeECccceecCCCCCCCcEEEE------EECHHHhCCcc-
Confidence 789999999999999987 99999988654 66667555765431 2344579999996 49999986543
Q ss_pred hhHHHHHHHHHHHHHHhccCCCeEEEEEECC
Q psy5349 166 RMLEELRKVERVVKCLSLIHCKLRVTLTHNK 196 (213)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~ 196 (213)
..+++.+.++++.+|..||+++|.|.+..
T Consensus 148 --~~~~~~i~~rl~~~A~l~pgl~i~l~der 176 (594)
T smart00433 148 --DDDFELLKRRLRELAFLNKGVKITLNDER 176 (594)
T ss_pred --cchHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 37888999999999999999999999864
No 15
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.87 E-value=4.1e-21 Score=171.84 Aligned_cols=167 Identities=20% Similarity=0.285 Sum_probs=123.4
Q ss_pred cCHHHHHHHHHHchhhhCCC-----eeEEEEEc----CCcceEEEEeCCCCCCcccHHHHHhhc-ccCCcCCcccccccc
Q psy5349 21 TSVSTAVKELIENAIDAKAT-----SIQINLMN----QGLDLIEVKDDGSGIPTQDVPLICQAA-TTSKITDITDLDSLS 90 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~----~~~~~i~V~DnG~GI~~~~l~~~~~~~-~~sk~~~~~~~~~~~ 90 (213)
..+.++++|||+||+||++. .|.|.+.. ++...|+|.|||+||++++++.+|.++ +++|.... ..
T Consensus 35 ~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~-----~~ 109 (535)
T PRK04184 35 RALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNL-----RQ 109 (535)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccccc-----cc
Confidence 45799999999999999865 57777753 233489999999999999999999886 66665431 24
Q ss_pred cCCCCchhhhhhhccC-----e-eEEEEeeCCCCceEEEEEc-----cCCeEEEec--cCCCCCCeEEEEeccccCchHH
Q psy5349 91 SYGFRGEALNALCQIG-----E-VSVTTKTNSDPVASMYKFS-----HTGEVTSTQ--PSHFPNGTTVSVKNLFHNLPVR 157 (213)
Q Consensus 91 ~~G~~G~gl~s~~~~s-----~-v~v~s~~~~~~~~~~~~~~-----~~g~~~~~~--~~~~~~GT~V~v~~lf~~~p~r 157 (213)
+.|++|+||+++..++ . ++|.|+..+...++.+.+. ..|.+.... +....+||+|.|. ++.+++.+
T Consensus 110 s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~-l~~~~~~~ 188 (535)
T PRK04184 110 SRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELE-IEGDWYRA 188 (535)
T ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEE-ECCcChhh
Confidence 6688999998876554 3 7899988776556666653 234443322 2345799999998 67777643
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCCC
Q psy5349 158 KQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPVW 206 (213)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~~ 206 (213)
.+.+.++++++|++||+++|+|.+.+...+.+++..
T Consensus 189 -------------~~~I~e~i~r~Al~nP~~~~~l~~~~g~~~~f~R~~ 224 (535)
T PRK04184 189 -------------KQRIYEYLKRTAIVNPHARITFKDPDGEILVFPRAT 224 (535)
T ss_pred -------------HHHHHHHHHHHHHhCCCeEEEEEeCCCeEEEEeccc
Confidence 236678999999999999999997654445555543
No 16
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.86 E-value=3.1e-21 Score=175.66 Aligned_cols=166 Identities=23% Similarity=0.346 Sum_probs=122.6
Q ss_pred cccCHHHHHHHHHHchhhhCCC-----eeEEEEEcCCc--ceEEEEeCCCCCCcccHHHHHhh-cccCCcCCcccccccc
Q psy5349 19 IITSVSTAVKELIENAIDAKAT-----SIQINLMNQGL--DLIEVKDDGSGIPTQDVPLICQA-ATTSKITDITDLDSLS 90 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~~--~~i~V~DnG~GI~~~~l~~~~~~-~~~sk~~~~~~~~~~~ 90 (213)
.+..+.++++|||+||+||++. .|.|.+...+. ..|+|.|||+||++++++.+|.+ |++||+... ..
T Consensus 33 ~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~-----~q 107 (659)
T PRK14867 33 KLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL-----IQ 107 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce-----ec
Confidence 3445679999999999999875 68888865432 36999999999999999999999 566776532 35
Q ss_pred cCCCCchhhhhhhccCe------eEEEEeeCCCCc---eEEEEEc-cCCeEEEe-ccCCCCCCeEEE--EeccccCchHH
Q psy5349 91 SYGFRGEALNALCQIGE------VSVTTKTNSDPV---ASMYKFS-HTGEVTST-QPSHFPNGTTVS--VKNLFHNLPVR 157 (213)
Q Consensus 91 ~~G~~G~gl~s~~~~s~------v~v~s~~~~~~~---~~~~~~~-~~g~~~~~-~~~~~~~GT~V~--v~~lf~~~p~r 157 (213)
+.|++|+||+++..+++ +++.|+...+.. ...+.++ .+|.+... .+...++||+|. |++||+| |
T Consensus 108 S~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLFyn---R 184 (659)
T PRK14867 108 SRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVTYN---R 184 (659)
T ss_pred cCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEEEeeceec---h
Confidence 67899999988776655 478888755431 2223332 24555443 344557999999 9999998 3
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEEC------CEEEEEeCC
Q psy5349 158 KQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHN------KCVIWQKNP 204 (213)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~------~~~~~~~~~ 204 (213)
+ +.. +.++++++|++||+++|+|.++ ++..+.+++
T Consensus 185 ~-----------E~~-i~e~l~r~ALanP~i~f~l~~~~~~~~~~r~~~~lp~ 225 (659)
T PRK14867 185 R-----------EQG-PFEYLRRISLSTPHAKITLKDPEETVVFDRTVDEIPE 225 (659)
T ss_pred h-----------hHH-HHHHHHHHHHhCCCcEEEEEeCCccccCCcceeecCc
Confidence 2 222 6799999999999999999998 555555554
No 17
>PRK05218 heat shock protein 90; Provisional
Probab=99.85 E-value=1.3e-20 Score=172.85 Aligned_cols=182 Identities=16% Similarity=0.267 Sum_probs=132.7
Q ss_pred HHHHHHhCCCcccCHHHHHHHHHHchhhhCC------------------CeeEEEEEcCCcceEEEEeCCCCCCcccHHH
Q psy5349 9 STIRQITTSQIITSVSTAVKELIENAIDAKA------------------TSIQINLMNQGLDLIEVKDDGSGIPTQDVPL 70 (213)
Q Consensus 9 ~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a------------------~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~ 70 (213)
...+.|.. .++.++..+|+|||+||.||+. ..|.|.+++++. .|+|.|||+||+.+++..
T Consensus 14 ~ll~ll~~-~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~i~I~DnG~GMt~eel~~ 91 (613)
T PRK05218 14 QLLHLMIH-SLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEAR-TLTISDNGIGMTREEVIE 91 (613)
T ss_pred HHHHHHhh-hhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCC-eEEEEECCCCCCHHHHHH
Confidence 44555654 4566799999999999999942 246666655443 799999999999999998
Q ss_pred HHhhcccCCcCCcc-----c-ccccccCCCCchhhhhhhccCe-eEEEEeeCC-CCceEEEEEccCCeEEEeccCCCCCC
Q psy5349 71 ICQAATTSKITDIT-----D-LDSLSSYGFRGEALNALCQIGE-VSVTTKTNS-DPVASMYKFSHTGEVTSTQPSHFPNG 142 (213)
Q Consensus 71 ~~~~~~~sk~~~~~-----~-~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~G 142 (213)
.+...++|....+. + .......|.+|+|++|++++++ |+|.||..+ +..++.|....++...........+|
T Consensus 92 ~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~i~~~~~~~~G 171 (613)
T PRK05218 92 NLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYTIEEIEKEERG 171 (613)
T ss_pred HHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeEEeECCCCCCC
Confidence 88877776321110 0 1124567999999999999986 999999977 66788998875555554332334799
Q ss_pred eEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHh--ccCCCeEE-----EEEECCEEEEEeCCC
Q psy5349 143 TTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLS--LIHCKLRV-----TLTHNKCVIWQKNPV 205 (213)
Q Consensus 143 T~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~i~f-----~l~~~~~~~~~~~~~ 205 (213)
|+|++. ++.......+..+++++++.|| +.+| |.| ...++++++|..++.
T Consensus 172 T~I~l~------------Lk~~~~e~~e~~~i~~li~kys~~l~~P-I~~~~~~~~~in~~~~~w~~~~~ 228 (613)
T PRK05218 172 TEITLH------------LKEDEDEFLDEWRIRSIIKKYSDFIPVP-IKLEKEEEETINSASALWTRSKS 228 (613)
T ss_pred cEEEEE------------ECcchhhhcCHHHHHHHHHHHHhcCCCC-EEEecccceeecCCccceecCCc
Confidence 999996 2222222234568889999999 8888 888 567888999987765
No 18
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.82 E-value=2.4e-19 Score=154.47 Aligned_cols=176 Identities=23% Similarity=0.287 Sum_probs=124.2
Q ss_pred HHHhCCCcccCHHHHHHHHHHchhhhCCC-----eeEEEEEcCC--cceEEEEeCCCCCCcccHHHHHhh-cccCCcCCc
Q psy5349 12 RQITTSQIITSVSTAVKELIENAIDAKAT-----SIQINLMNQG--LDLIEVKDDGSGIPTQDVPLICQA-ATTSKITDI 83 (213)
Q Consensus 12 ~~i~~~~~i~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~--~~~i~V~DnG~GI~~~~l~~~~~~-~~~sk~~~~ 83 (213)
..+.-...+.++.++|+|||+||+||+.. .|.|++...+ ...+.|.|||+|||.++++.+|.. +++||+...
T Consensus 26 ~mlGf~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~ 105 (538)
T COG1389 26 EMLGFDGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRN 105 (538)
T ss_pred HhcCCCCchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhh
Confidence 45556778889999999999999999854 5777776443 348999999999999999999865 788888543
Q ss_pred ccccccccCCCCchhhhhh-----hccCe-eEEEEeeCCCCceEEEEEc----cC-CeEEEe---ccCCCCCCeEEEEec
Q psy5349 84 TDLDSLSSYGFRGEALNAL-----CQIGE-VSVTTKTNSDPVASMYKFS----HT-GEVTST---QPSHFPNGTTVSVKN 149 (213)
Q Consensus 84 ~~~~~~~~~G~~G~gl~s~-----~~~s~-v~v~s~~~~~~~~~~~~~~----~~-g~~~~~---~~~~~~~GT~V~v~~ 149 (213)
+++.|..|+|++.+ ...++ ++|.|.+.++...+.+.+. .+ +.+... .....+|||+|.+.
T Consensus 106 -----~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~- 179 (538)
T COG1389 106 -----IQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE- 179 (538)
T ss_pred -----hhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE-
Confidence 45778888886544 34456 9999999886665554442 12 222221 11234799999998
Q ss_pred cccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCC
Q psy5349 150 LFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPV 205 (213)
Q Consensus 150 lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~ 205 (213)
+-.++..+++ +.+.+||++.++++|+..|.|.+.+-..+-+++.
T Consensus 180 ~~~~~~~~~~------------qgi~eYlkrtaiinPhA~I~l~dPdG~~~vf~r~ 223 (538)
T COG1389 180 LKGVWYRAKR------------QGIYEYLKRTAIINPHARIVLKDPDGNLVVFPRS 223 (538)
T ss_pred ecccchhhcc------------cCHHHHHHHHhhcCCceEEEEECCCCcEEEeccc
Confidence 1222232211 1356899999999999999999976555555444
No 19
>PRK14083 HSP90 family protein; Provisional
Probab=99.80 E-value=3.2e-19 Score=162.59 Aligned_cols=185 Identities=21% Similarity=0.280 Sum_probs=125.9
Q ss_pred HHHHHHhCCCcccCHHHHHHHHHHchhhhCCC----------eeEEEEEcCCcceEEEEeCCCCCCcccHHHHHh-hccc
Q psy5349 9 STIRQITTSQIITSVSTAVKELIENAIDAKAT----------SIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQ-AATT 77 (213)
Q Consensus 9 ~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~----------~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~-~~~~ 77 (213)
...+.+ +..++.++..+|+|||+||.||++. .|.|++.+.+..+|+|.|||+||+.+++...+. ...+
T Consensus 11 ~ll~ll-~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S 89 (601)
T PRK14083 11 GVIDLL-SRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHEFLATIGRS 89 (601)
T ss_pred HHHHHH-HHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHHHHhhhccc
Confidence 345555 3556678999999999999999865 688877322334999999999999999987653 3333
Q ss_pred CCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEec--cCCCCCCeEEEEeccccCc
Q psy5349 78 SKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQ--PSHFPNGTTVSVKNLFHNL 154 (213)
Q Consensus 78 sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~GT~V~v~~lf~~~ 154 (213)
+|....-.......+|.+|+|++|++.+++ |+|.|+..+...++.|....+|.+.... .....+||+|++.- -
T Consensus 90 ~k~~~~~~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l----~ 165 (601)
T PRK14083 90 SKRDENLGFARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRP----R 165 (601)
T ss_pred hhhhhhhcccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEe----c
Confidence 343211001123467999999999999999 9999998765667888877777776543 23457999999981 1
Q ss_pred hHHHHHhhcchhhHHHHHHHHHHHHHHhccCC-CeEEE----EEECCEEEEEeCCCC
Q psy5349 155 PVRKQYLSSKNRMLEELRKVERVVKCLSLIHC-KLRVT----LTHNKCVIWQKNPVW 206 (213)
Q Consensus 155 p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p-~i~f~----l~~~~~~~~~~~~~~ 206 (213)
+.-+.+ .+..+++++++.|+-.-| -|.+. ..+..+++|..++.+
T Consensus 166 ~d~~~~--------~~~~~i~~li~~ys~~i~~pI~l~~~~~~iN~~~~lW~~~~~e 214 (601)
T PRK14083 166 PDAEEW--------LERETVEELAKKYGSLLPVPIRVEGEKGGVNETPPPWTRDYPD 214 (601)
T ss_pred Cchhhh--------ccHHHHHHHHHHHhccCCCCcccCCceeeecCCCCCccCCccc
Confidence 222223 334577888999975433 13332 234456777766543
No 20
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.2e-19 Score=158.33 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=111.2
Q ss_pred CCCcccCHHHHHHHHHHchhhhCCC------------------eeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhccc
Q psy5349 16 TSQIITSVSTAVKELIENAIDAKAT------------------SIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATT 77 (213)
Q Consensus 16 ~~~~i~~~~~~v~eLi~NA~DA~a~------------------~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~ 77 (213)
...+.++....|+|||+||.||+.+ .|.|..+.+ ..+++|.|||+||+.+++.....--+.
T Consensus 21 ihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~-~kTLtI~DNGIGMT~~Ev~~~LgTIAk 99 (623)
T COG0326 21 IHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKD-NKTLTISDNGIGMTKDEVIENLGTIAK 99 (623)
T ss_pred HHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEccc-CCEEEEEeCCCCCCHHHHHHHHHHhhh
Confidence 4446677899999999999998632 355555433 249999999999999998643221111
Q ss_pred CC----cCC-cccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEeccCCCC-CCeEEEEecc
Q psy5349 78 SK----ITD-ITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFP-NGTTVSVKNL 150 (213)
Q Consensus 78 sk----~~~-~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~GT~V~v~~l 150 (213)
|. ... .++.....-+|.+|+|++|++.+|+ |+|.|+..++...+.|.-+..|.+......... +||+|++.
T Consensus 100 SgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~~~~~~~~GT~I~L~-- 177 (623)
T COG0326 100 SGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDIDKEPRRGTEITLH-- 177 (623)
T ss_pred ccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEeeccCCCCCCcEEEEE--
Confidence 11 011 0111234568999999999999999 999999999888889998888888775444445 59999998
Q ss_pred ccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCC
Q psy5349 151 FHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHC 186 (213)
Q Consensus 151 f~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 186 (213)
++.....+.+-.++++++..|+.+-|
T Consensus 178 ----------Lk~~e~efl~~~rl~~ivkkYSd~i~ 203 (623)
T COG0326 178 ----------LKEEEDEFLEEWRLREIVKKYSDHIA 203 (623)
T ss_pred ----------ECCchHHHhhhhHHHHHHHHHhcccc
Confidence 22222223445588999999996444
No 21
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=99.76 E-value=6.6e-18 Score=155.11 Aligned_cols=186 Identities=20% Similarity=0.275 Sum_probs=133.9
Q ss_pred cccCCHHHHHHHhCCCcc-----cCHHHHHHHHHHchhhh----CCCeeEEEEEcCCcceEEEEeCCCCCCcccHH----
Q psy5349 3 INILPQSTIRQITTSQII-----TSVSTAVKELIENAIDA----KATSIQINLMNQGLDLIEVKDDGSGIPTQDVP---- 69 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i-----~~~~~~v~eLi~NA~DA----~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~---- 69 (213)
|+.|..--.=+.+.|.|| ..+.+++.|+|+||+|- .++.|.|++++++ +|+|.|||+|||.+.-+
T Consensus 10 i~~L~glE~VRkRPgMYIGst~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dg--sitV~DnGrGIPv~~h~~~~~ 87 (637)
T TIGR01058 10 IKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDN--SITVQDDGRGIPTGIHQDGNI 87 (637)
T ss_pred CeeecccHHHhcCCCCeECCCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcCCC--eEEEEECCCcccCcccCcCCC
Confidence 666666545556667676 34789999999999992 3789999998665 89999999999975332
Q ss_pred ----HHH-hhcccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe---ccCCCC
Q psy5349 70 ----LIC-QAATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST---QPSHFP 140 (213)
Q Consensus 70 ----~~~-~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~---~~~~~~ 140 (213)
.+| ..++++|+++ ..+..+.|.+|+|++.++++|+ ++|++++.+.. |...|..+|....+ ......
T Consensus 88 ~~~E~v~t~LhaGgkfd~---~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~--~~q~f~~Gg~~~~~l~~~~~~~~ 162 (637)
T TIGR01058 88 STVETVFTVLHAGGKFDQ---GGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQI--YQQRFENGGKIVQSLKKIGTTKK 162 (637)
T ss_pred ccceeEEEEecccCcCCC---CcccccCCcccccccccceeeceEEEEEEECCEE--EEEEEecCCcCcCCcccccCCCC
Confidence 222 3455667643 3355678999999999999999 99999877754 34455533343221 122346
Q ss_pred CCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeCCC
Q psy5349 141 NGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKNPV 205 (213)
Q Consensus 141 ~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~~~ 205 (213)
+||+|++. |+...|- .. ..+++.+.++++.+|..+|+++|+|.+.. +..|+++++
T Consensus 163 ~GT~V~F~------PD~~iF~-~~---~f~~d~l~~RlrelA~Ln~GL~I~l~der~~~~~~f~~~~G 220 (637)
T TIGR01058 163 TGTLVHFH------PDPTIFK-TT---QFNSNIIKERLKESAFLLKKLKLTFTDKRTNKTTVFFYENG 220 (637)
T ss_pred CceEEEEE------eCHHHcC-CC---ccCHHHHHHHHHHHhccCCCcEEEEEecCCCceEEEEcCcC
Confidence 89999997 8876662 22 25677899999999999999999999864 334666554
No 22
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.5e-18 Score=155.19 Aligned_cols=186 Identities=22% Similarity=0.296 Sum_probs=134.9
Q ss_pred cccCCHHHHHHHhCCCcc------cCHHHHHHHHHHchhh---hC-CCeeEEEEEcCCcceEEEEeCCCCCCcccHH---
Q psy5349 3 INILPQSTIRQITTSQII------TSVSTAVKELIENAID---AK-ATSIQINLMNQGLDLIEVKDDGSGIPTQDVP--- 69 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i------~~~~~~v~eLi~NA~D---A~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~--- 69 (213)
|+.|..--.=+.+.|.|| +.|.+.+.|+|+||+| || ++.|.|++++++ +|+|.|||+|||.+--+
T Consensus 11 I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~--sisV~DnGRGIPvdiH~~~~ 88 (635)
T COG0187 11 IQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG--SISVEDNGRGIPVDIHPKEK 88 (635)
T ss_pred ceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCC--eEEEEECCCCCccccCCCCC
Confidence 444544333344556554 4689999999999999 44 788999998665 99999999999977633
Q ss_pred -----HHH-hhcccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe--cc--CC
Q psy5349 70 -----LIC-QAATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST--QP--SH 138 (213)
Q Consensus 70 -----~~~-~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~--~~--~~ 138 (213)
.++ ..|+++|++. ..+..+.|.+|+|.+.++++|+ ++|++++.+.. |+..|..+..+... .. ..
T Consensus 89 ~~~vEvI~T~LHAGGKFd~---~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~--y~q~f~~G~~~~~l~~ig~~~~ 163 (635)
T COG0187 89 VSAVEVIFTVLHAGGKFDN---DSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKI--YRQRFERGVPVTPLEVIGSTDT 163 (635)
T ss_pred CCceEEEEEeeccCcccCC---CccEeecCCCccceEEEecccceEEEEEEECCEE--EEEEEeCCCcCCCceecccCCC
Confidence 333 3577778764 3455678999999999999999 99999998764 44445433332111 11 23
Q ss_pred CCCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCE----EEEEeCCC
Q psy5349 139 FPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKC----VIWQKNPV 205 (213)
Q Consensus 139 ~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~----~~~~~~~~ 205 (213)
..+||+|++. |+...|-. . .++++.+.++|+.+|..+|++++.|.+... ..|++++.
T Consensus 164 ~~~GT~V~F~------PD~~iF~~-~---~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~~~~~~y~~G 224 (635)
T COG0187 164 KKTGTKVRFK------PDPEIFGE-T---EFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHYEGG 224 (635)
T ss_pred CCCccEEEEE------cChHhcCC-c---ccCHHHHHHHHHHHhccCCCCEEEEEeccCCcccceeecccH
Confidence 4689999987 77766533 2 378899999999999999999999998642 13666654
No 23
>PTZ00130 heat shock protein 90; Provisional
Probab=99.73 E-value=1.3e-17 Score=154.56 Aligned_cols=160 Identities=19% Similarity=0.272 Sum_probs=110.7
Q ss_pred HHHHhCCCcccCHHHHHHHHHHchhhhCC----------------CeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHh
Q psy5349 11 IRQITTSQIITSVSTAVKELIENAIDAKA----------------TSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQ 73 (213)
Q Consensus 11 ~~~i~~~~~i~~~~~~v~eLi~NA~DA~a----------------~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~ 73 (213)
.+.| ...+++++..+|+|||+||.||+. ..+.|++..+. ..+|+|.|||+||+.+++...+.
T Consensus 78 ldii-i~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLg 156 (814)
T PTZ00130 78 MDII-VNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLG 156 (814)
T ss_pred HHHH-hhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHHHhh
Confidence 3344 455778889999999999999985 13445554332 24899999999999999875443
Q ss_pred hcccCCcCCc----cc-ccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEeccC---CCCCCeE
Q psy5349 74 AATTSKITDI----TD-LDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQPS---HFPNGTT 144 (213)
Q Consensus 74 ~~~~sk~~~~----~~-~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~GT~ 144 (213)
.-+.|....+ .. ......+|.+|+|++|++.+|+ |+|+||..+ ..++.|+-..+|.+...... ..++||+
T Consensus 157 TIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~ 235 (814)
T PTZ00130 157 TIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIWESTADAKFTIYKDPRGSTLKRGTR 235 (814)
T ss_pred hhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEEEECCCCcEEEEECCCCCCCCCCcE
Confidence 3222211111 11 1124578999999999999999 999999866 45788988777887765422 2379999
Q ss_pred EEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhcc
Q psy5349 145 VSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLI 184 (213)
Q Consensus 145 V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (213)
|++. ++.....+.+..+++++++.|+-.
T Consensus 236 I~Lh------------Lked~~efl~~~~ik~likkYS~f 263 (814)
T PTZ00130 236 ISLH------------LKEDATNLMNDKKLVDLISKYSQF 263 (814)
T ss_pred EEEE------------ECCchhhhccHHHHHHHHHHhhcc
Confidence 9998 222222234556889999999954
No 24
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.70 E-value=5.8e-17 Score=149.57 Aligned_cols=157 Identities=22% Similarity=0.280 Sum_probs=108.9
Q ss_pred CCCcccCHHHHHHHHHHchhhhCCC----------------eeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccC
Q psy5349 16 TSQIITSVSTAVKELIENAIDAKAT----------------SIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTS 78 (213)
Q Consensus 16 ~~~~i~~~~~~v~eLi~NA~DA~a~----------------~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~s 78 (213)
...+..++...|+|||+||.||+.+ .+.|++..+. ..+++|.|||+||+.+++...+..-+.|
T Consensus 19 i~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~~~LgtIa~S 98 (701)
T PTZ00272 19 INTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARS 98 (701)
T ss_pred HhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHHHHhhhhhhc
Confidence 4456667788999999999999632 2455554332 2489999999999999987654332222
Q ss_pred CcCCc----ccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEeccC--CCCCCeEEEEeccc
Q psy5349 79 KITDI----TDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQPS--HFPNGTTVSVKNLF 151 (213)
Q Consensus 79 k~~~~----~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~GT~V~v~~lf 151 (213)
....+ ........+|.+|+|++|++.+++ |+|+||..+. .++.|....+|.+...... ...+||+|++.
T Consensus 99 Gt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~-~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L~--- 174 (701)
T PTZ00272 99 GTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSD-ESYVWESSAGGTFTITSTPESDMKRGTRITLH--- 174 (701)
T ss_pred chHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCC-ceEEEEECCCCcEEEEeCCCCCCCCCCEEEEE---
Confidence 11101 011124578999999999999999 9999998664 6899988877777764322 33799999998
Q ss_pred cCchHHHHHhhcchhhHHHHHHHHHHHHHHhccC
Q psy5349 152 HNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIH 185 (213)
Q Consensus 152 ~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (213)
++.....+.+-.+++++++.|+-.-
T Consensus 175 ---------Lk~d~~ef~~~~~i~~li~kYs~fi 199 (701)
T PTZ00272 175 ---------LKEDQMEYLEPRRLKELIKKHSEFI 199 (701)
T ss_pred ---------ECCchHHhccHHHHHHHHHHhcccc
Confidence 2222223345568899999999543
No 25
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=8.7e-18 Score=126.88 Aligned_cols=100 Identities=30% Similarity=0.475 Sum_probs=77.1
Q ss_pred HHHHHHHHHHchhhhCCCeeEEEEEcC--CcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh-h
Q psy5349 23 VSTAVKELIENAIDAKATSIQINLMNQ--GLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA-L 99 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~~I~I~~~~~--~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g-l 99 (213)
+..||+|||+||+||++++|.|.+... +...|.|.|||.||+.+++..++..+.+++... ......|.+|+| .
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~----~~~~~~G~~G~G~k 78 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSE----KDRQSIGRFGIGLK 78 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHH----HHGGGGGGGTSGCG
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCch----hhhhcCCCcceEHH
Confidence 478999999999999999999999653 345999999999999999999887666665421 123468999999 5
Q ss_pred hhhhccCe-eEEEEeeCCCCceEEEEEc
Q psy5349 100 NALCQIGE-VSVTTKTNSDPVASMYKFS 126 (213)
Q Consensus 100 ~s~~~~s~-v~v~s~~~~~~~~~~~~~~ 126 (213)
.+++.++. ++|.|+..+....+.+.+.
T Consensus 79 ~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 79 LAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp GGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred HHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 66777777 9999999988776666554
No 26
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=99.67 E-value=6.3e-17 Score=150.63 Aligned_cols=182 Identities=19% Similarity=0.270 Sum_probs=124.7
Q ss_pred cccCCHHHHHHHhCCCcc-----cCHHHHHHHHHHchhhh---C-CCeeEEEEEcCCcceEEEEeCCCCCCcccHH----
Q psy5349 3 INILPQSTIRQITTSQII-----TSVSTAVKELIENAIDA---K-ATSIQINLMNQGLDLIEVKDDGSGIPTQDVP---- 69 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i-----~~~~~~v~eLi~NA~DA---~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~---- 69 (213)
|+.|..--.=+.+-|.|| ..+.++|.|+|+||+|. + ++.|.|+++.++ +|+|.|||+|||.+.-+
T Consensus 105 I~vLeGLEaVRkRPGMYIGst~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg--sItV~DnGRGIPvd~h~k~g~ 182 (903)
T PTZ00109 105 IVVLEGLEAVRKRPGMYIGNTDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG--SVEISDNGRGIPCDVSEKTGK 182 (903)
T ss_pred CeehhccHHHhcCCCceeCCCCCCcceEEEEEEeeccchhhccCCCcEEEEEEcCCC--eEEEEeCCccccccccccCCC
Confidence 334444333334455555 35789999999999993 3 678999997765 89999999999986543
Q ss_pred ----HHH-hhcccCCcCCcc-------------------------------------cccccccCCCCchhhhhhhccCe
Q psy5349 70 ----LIC-QAATTSKITDIT-------------------------------------DLDSLSSYGFRGEALNALCQIGE 107 (213)
Q Consensus 70 ----~~~-~~~~~sk~~~~~-------------------------------------~~~~~~~~G~~G~gl~s~~~~s~ 107 (213)
.++ ..|+++|++... +..+..+.|.+|+|++.++++|+
T Consensus 183 s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~ 262 (903)
T PTZ00109 183 SGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSS 262 (903)
T ss_pred cceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccC
Confidence 222 345666765410 01234577999999999999999
Q ss_pred -eEEEEeeCCCCceEEEEEccCCeEEEe---ccCC-CCCCeEEEEeccccCchH-HHHHhhcchh-----------hHHH
Q psy5349 108 -VSVTTKTNSDPVASMYKFSHTGEVTST---QPSH-FPNGTTVSVKNLFHNLPV-RKQYLSSKNR-----------MLEE 170 (213)
Q Consensus 108 -v~v~s~~~~~~~~~~~~~~~~g~~~~~---~~~~-~~~GT~V~v~~lf~~~p~-r~~~~~~~~~-----------~~~~ 170 (213)
++|++++.+. .|...|. .|....+ .... ..+||+|++. |+ ..-| ..... ....
T Consensus 263 ~l~VeV~RdGK--~y~q~F~-rG~~v~pLkvig~~~~~tGT~VtF~------PD~~~IF-~~~~~~~~~~~~~~~~~~F~ 332 (903)
T PTZ00109 263 FLKVDVFKGGK--IYSIELS-KGKVTKPLSVFSCPLKKRGTTIHFL------PDYKHIF-KTHHQHTETEEEEGCKNGFN 332 (903)
T ss_pred eEEEEEEECCE--EEEEEeC-CCcccCCccccCCcCCCCceEEEEE------eCcchhc-CccccccccccccccccccC
Confidence 9999999876 3555554 4543321 1122 4689999997 66 4333 21100 0135
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEECC
Q psy5349 171 LRKVERVVKCLSLIHCKLRVTLTHNK 196 (213)
Q Consensus 171 ~~~~~~~l~~~~~~~p~i~f~l~~~~ 196 (213)
++.|.++++.+|..+|+++|+|.+..
T Consensus 333 ~d~L~~RLrElAfLNpGL~I~L~DeR 358 (903)
T PTZ00109 333 LDLIKNRIHELSYLNPGLTFYLVDER 358 (903)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEecC
Confidence 77899999999999999999999753
No 27
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=99.61 E-value=1.3e-15 Score=139.17 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=114.8
Q ss_pred ccCHHHHHHHHHHchhhh------C-CCeeEEEEEcCCcceEEEEeCCCCCCcccHH-----------HH-HhhcccCCc
Q psy5349 20 ITSVSTAVKELIENAIDA------K-ATSIQINLMNQGLDLIEVKDDGSGIPTQDVP-----------LI-CQAATTSKI 80 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~DA------~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~-----------~~-~~~~~~sk~ 80 (213)
++.+.+++.|+|+||+|. + ++.|.|.++ ++ +|+|.|||+|||.+..+ .+ ...++++|+
T Consensus 43 ~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-dg--sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkF 119 (602)
T PHA02569 43 VPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-NN--QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNF 119 (602)
T ss_pred cccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-CC--EEEEEECCCcccCCcccccccccccceEEEEEeecccccc
Confidence 356788999999999993 3 668999997 54 89999999999986432 11 234566777
Q ss_pred CCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe--ccCCCCCCeEEEEeccccCchHH
Q psy5349 81 TDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST--QPSHFPNGTTVSVKNLFHNLPVR 157 (213)
Q Consensus 81 ~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~GT~V~v~~lf~~~p~r 157 (213)
+ + .+..+.|.+|+|++.++++|+ ++|+++..+.. +...|. +|....+ ......+||+|++. |+.
T Consensus 120 d---~-~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~--~~q~f~-~G~~~~~~~~~~~~~~GT~V~F~------PD~ 186 (602)
T PHA02569 120 D---D-TNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNE--VTVNCS-NGAENISWSTKPGKGKGTSVTFI------PDF 186 (602)
T ss_pred C---C-cceeeCCcCCccceeeeccchhhheEEEcCCEE--EEEEec-CCcccCCcccCCCCCCccEEEEE------ECH
Confidence 3 2 255678999999999999999 88887655432 555554 4442221 12234689999997 887
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC
Q psy5349 158 KQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK 196 (213)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~ 196 (213)
..|-. ..-....++.+.++++.+|..+|+++|.|.+..
T Consensus 187 ~iF~~-~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~der 224 (602)
T PHA02569 187 SHFEV-NGLDQQYLDIILDRLQTLAVVFPDIKFTFNGKK 224 (602)
T ss_pred HHhCC-CccCccHHHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 66622 110012467899999999999999999998754
No 28
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=99.54 E-value=4.6e-14 Score=137.40 Aligned_cols=163 Identities=19% Similarity=0.195 Sum_probs=115.4
Q ss_pred cccCHHHHHHHHHHchhhhC--------CCeeEEEEEcCCcceEEEEeCCCCCCcccHH--------HHH-hhcccCCcC
Q psy5349 19 IITSVSTAVKELIENAIDAK--------ATSIQINLMNQGLDLIEVKDDGSGIPTQDVP--------LIC-QAATTSKIT 81 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~--------a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~--------~~~-~~~~~sk~~ 81 (213)
+++.+.+++.|+|+||+|.. ++.|.|+++.+. ..|+|.|||+|||.+.-+ .+| ..++++|++
T Consensus 54 ~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~-g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfd 132 (1388)
T PTZ00108 54 YVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEEN-GEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYD 132 (1388)
T ss_pred ccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccC-CeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCC
Confidence 45678999999999999942 467999997652 289999999999976432 233 345666764
Q ss_pred CcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCC-eEEEec--cCCC-CCCeEEEEeccccCchH
Q psy5349 82 DITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTG-EVTSTQ--PSHF-PNGTTVSVKNLFHNLPV 156 (213)
Q Consensus 82 ~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g-~~~~~~--~~~~-~~GT~V~v~~lf~~~p~ 156 (213)
+ ..+..+.|.+|+|...++.+|. ++|+++.......+...|..+. ....+. .... .+||+|++. |+
T Consensus 133 d---~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~------PD 203 (1388)
T PTZ00108 133 D---TEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFY------PD 203 (1388)
T ss_pred C---CceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCCCCCCCceEEEEE------eC
Confidence 3 3456688999999999999999 9999988832233444454221 222111 1112 689999997 77
Q ss_pred HHHHhhcchhhHHHHHH---HHHHHHHHhccCCCeEEEEEEC
Q psy5349 157 RKQYLSSKNRMLEELRK---VERVVKCLSLIHCKLRVTLTHN 195 (213)
Q Consensus 157 r~~~~~~~~~~~~~~~~---~~~~l~~~~~~~p~i~f~l~~~ 195 (213)
...| .... .+.+. +.++++.+|..+|+++|.|.+.
T Consensus 204 ~~iF-~~~~---fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 204 YAKF-GMTE---FDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred HHHc-CCCc---cChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 7766 2221 33334 8899999999999999999764
No 29
>PLN03237 DNA topoisomerase 2; Provisional
Probab=99.51 E-value=1.7e-13 Score=133.27 Aligned_cols=167 Identities=18% Similarity=0.237 Sum_probs=111.6
Q ss_pred cccCHHHHHHHHHHchhhhC-----CCeeEEEEEcCCcceEEEEeCCCCCCcccHH--------HHH-hhcccCCcCCcc
Q psy5349 19 IITSVSTAVKELIENAIDAK-----ATSIQINLMNQGLDLIEVKDDGSGIPTQDVP--------LIC-QAATTSKITDIT 84 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~-----a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~--------~~~-~~~~~sk~~~~~ 84 (213)
+++.+.+++.|+|+||+|.. ++.|.|+++.+. .+|+|.|||+|||.+.-+ .+| ..++++|+++
T Consensus 74 ~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~-gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd-- 150 (1465)
T PLN03237 74 YVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQ-NLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDD-- 150 (1465)
T ss_pred ccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCC-CEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCC--
Confidence 35778999999999999943 468999997332 289999999999976432 233 3456677643
Q ss_pred cccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEcc-CCeEEEe---ccCCCCCCeEEEEeccccCchHHHH
Q psy5349 85 DLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSH-TGEVTST---QPSHFPNGTTVSVKNLFHNLPVRKQ 159 (213)
Q Consensus 85 ~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~GT~V~v~~lf~~~p~r~~ 159 (213)
..+..+.|.+|+|...++.+|. ++|+++.......|...|.. .|....+ ......+||+|++. |+...
T Consensus 151 -~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~------PD~ei 223 (1465)
T PLN03237 151 -NEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFK------PDLAK 223 (1465)
T ss_pred -CcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCCCCCCceEEEEE------ECHHH
Confidence 3455688999999999999999 99999733222234444442 2433221 11123699999997 77776
Q ss_pred HhhcchhhHHHHHHHHHHHHHHh-ccCCCeEEEEEECC
Q psy5349 160 YLSSKNRMLEELRKVERVVKCLS-LIHCKLRVTLTHNK 196 (213)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~-~~~p~i~f~l~~~~ 196 (213)
| ....-....+..+...++.+| ..+|+++|.|.+..
T Consensus 224 F-~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 224 F-NMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred h-CCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 6 222111223333446677777 78899999998754
No 30
>PLN03128 DNA topoisomerase 2; Provisional
Probab=99.50 E-value=2.5e-13 Score=131.03 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=113.7
Q ss_pred cccCHHHHHHHHHHchhhhC-----CCeeEEEEEc-CCcceEEEEeCCCCCCcccHH--------HHH-hhcccCCcCCc
Q psy5349 19 IITSVSTAVKELIENAIDAK-----ATSIQINLMN-QGLDLIEVKDDGSGIPTQDVP--------LIC-QAATTSKITDI 83 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~-----a~~I~I~~~~-~~~~~i~V~DnG~GI~~~~l~--------~~~-~~~~~sk~~~~ 83 (213)
+++.+.+++.|+|+||+|.. ++.|.|+++. ++ +|+|.|||+|||.+..+ .+| ..++++|+++
T Consensus 49 ~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg--sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd- 125 (1135)
T PLN03128 49 YVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN--TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDD- 125 (1135)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC--eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCC-
Confidence 45678999999999999943 4689999976 34 99999999999976432 223 3456677643
Q ss_pred ccccccccCCCCchhhhhhhccCe-eEEEEe--eCCCCceEEEEEccCCeEEEe----ccC-CCCCCeEEEEeccccCch
Q psy5349 84 TDLDSLSSYGFRGEALNALCQIGE-VSVTTK--TNSDPVASMYKFSHTGEVTST----QPS-HFPNGTTVSVKNLFHNLP 155 (213)
Q Consensus 84 ~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~--~~~~~~~~~~~~~~~g~~~~~----~~~-~~~~GT~V~v~~lf~~~p 155 (213)
..+..+.|.+|+|...++++|. ++|+++ +.+. .+...|. +|..... ... ...+||+|++. |
T Consensus 126 --~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk--~y~q~f~-~G~~~~~~p~i~~~~~~~~GT~ItF~------P 194 (1135)
T PLN03128 126 --NEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGK--KYKQVFT-NNMSVKSEPKITSCKASENWTKITFK------P 194 (1135)
T ss_pred --ccceeeccccCCCCeEEEeecCeEEEEEEECCCCe--EEEEEeC-CCcccCCCceeccCCCCCCceEEEEE------E
Confidence 3455688999999999999998 999997 4443 3455554 4432211 111 23589999997 7
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHh-ccCCCeEEEEEECC
Q psy5349 156 VRKQYLSSKNRMLEELRKVERVVKCLS-LIHCKLRVTLTHNK 196 (213)
Q Consensus 156 ~r~~~~~~~~~~~~~~~~~~~~l~~~~-~~~p~i~f~l~~~~ 196 (213)
+...|-. ..-....++.+.+.++.+| ..+|+++|.|.+..
T Consensus 195 D~~iF~~-~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder 235 (1135)
T PLN03128 195 DLAKFNM-TRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKK 235 (1135)
T ss_pred CHHHcCC-CccChHHHHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 7766521 1111123456778888887 77899999998754
No 31
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.37 E-value=4.1e-13 Score=97.06 Aligned_cols=101 Identities=30% Similarity=0.421 Sum_probs=73.5
Q ss_pred cCHHHHHHHHHHchhhhCCC--eeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCch
Q psy5349 21 TSVSTAVKELIENAIDAKAT--SIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGE 97 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~--~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~ 97 (213)
..+.+++.||++||+++... .|.|.+..++ ...|+|.|||.|||+++++.+|.++++.+... ...+.+|+
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~-------~~~~g~Gl 76 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSE-------TSISGHGL 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSS-------GGSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccccccc-------cccCCCCh
Confidence 45789999999999999865 8888887543 34999999999999999999999988776521 12345899
Q ss_pred hhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 98 ALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 98 gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
||+.+..+ .+ ..+|.+... +..+.||+|.+.
T Consensus 77 GL~~~~~~----------~~--------~~~g~l~~~--~~~~~gt~v~~~ 107 (111)
T PF02518_consen 77 GLYIVKQI----------AE--------RHGGELTIE--SSEGGGTTVTFT 107 (111)
T ss_dssp HHHHHHHH----------HH--------HTTEEEEEE--EETTTEEEEEEE
T ss_pred HHHHHHHH----------HH--------HCCCEEEEE--EcCCCcEEEEEE
Confidence 99877332 22 124444432 223578888887
No 32
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.35 E-value=1e-12 Score=116.53 Aligned_cols=105 Identities=30% Similarity=0.404 Sum_probs=83.7
Q ss_pred HHhCCCcccCHHHHHHHHHHchhhhCC-----CeeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCcccc
Q psy5349 13 QITTSQIITSVSTAVKELIENAIDAKA-----TSIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDL 86 (213)
Q Consensus 13 ~i~~~~~i~~~~~~v~eLi~NA~DA~a-----~~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~ 86 (213)
...++.....+..++.|||+||+||-+ +.|.+.+.+++.. .|+|.|||+|||++..+.+|++++++|..
T Consensus 418 ~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~----- 492 (537)
T COG3290 418 QLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT----- 492 (537)
T ss_pred CCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC-----
Confidence 344555667899999999999999976 4799999766654 89999999999999999999999988862
Q ss_pred cccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 87 DSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 87 ~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+|+||+.+ +...+ ..+|.+.. ++..+.||++++.
T Consensus 493 ------~~rGiGL~Lv----------kq~V~--------~~~G~I~~--~s~~~~Gt~F~i~ 528 (537)
T COG3290 493 ------GGRGIGLYLV----------KQLVE--------RLGGSIEV--ESEKGQGTRFSIY 528 (537)
T ss_pred ------CCCchhHHHH----------HHHHH--------HcCceEEE--eeCCCCceEEEEE
Confidence 3689999988 54444 23566665 3456789999998
No 33
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.32 E-value=3.1e-12 Score=113.44 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=73.9
Q ss_pred HHHHHHHHHHchhhhCCC------eeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCC
Q psy5349 23 VSTAVKELIENAIDAKAT------SIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFR 95 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~------~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~ 95 (213)
+.+++.||+.||++|.+. .|.|.....+ ...|+|.|||.|||++...++|++|+++|... .+..
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---------~~G~ 458 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---------RKHI 458 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---------CCCC
Confidence 789999999999998643 3666664433 34899999999999999999999999887532 2357
Q ss_pred chhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 96 GEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 96 G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+||+.+ +...+ .++|.+... +..+.||+++|+
T Consensus 459 GlGL~i~----------~~iv~--------~~gG~i~~~--s~~~~G~~f~i~ 491 (494)
T TIGR02938 459 GMGLSVA----------QEIVA--------DHGGIIDLD--DDYSEGCRIIVE 491 (494)
T ss_pred cccHHHH----------HHHHH--------HcCCEEEEE--ECCCCCEEEEEE
Confidence 9999887 44443 357777763 344689999998
No 34
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.31 E-value=3.8e-12 Score=107.38 Aligned_cols=102 Identities=23% Similarity=0.293 Sum_probs=79.7
Q ss_pred cCHHHHHHHHHHchhhhCCC--eeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCch
Q psy5349 21 TSVSTAVKELIENAIDAKAT--SIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGE 97 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~ 97 (213)
+.+.|++.|+|.||++|++. +|+|.+...+.+ .|+|.|.|.|||.++++.+|.+|+.-.. +...+.|..|+
T Consensus 341 DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk------ARsR~~gGTGL 414 (459)
T COG5002 341 DKMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK------ARSRKMGGTGL 414 (459)
T ss_pred hHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh------hhhhcCCCCch
Confidence 46889999999999999975 788888654433 8999999999999999999999987532 22246788999
Q ss_pred hhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 98 ALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 98 gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
||+.+ |...+ .++|.+.. .+..++||+++++
T Consensus 415 GLaIa----------keiV~--------~hgG~iWA--~s~~gkgtt~~ft 445 (459)
T COG5002 415 GLAIA----------KEIVQ--------AHGGRIWA--ESEEGKGTTFSFT 445 (459)
T ss_pred hHHHH----------HHHHH--------HhCCeEEE--ecccCCceEEEEE
Confidence 99987 54443 35666655 3456899999998
No 35
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.30 E-value=4.4e-12 Score=113.33 Aligned_cols=98 Identities=21% Similarity=0.343 Sum_probs=72.1
Q ss_pred cCHHHHHHHHHHchhhhCCC----eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCC
Q psy5349 21 TSVSTAVKELIENAIDAKAT----SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFR 95 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~----~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~ 95 (213)
..+.|++.|||.||+||-+. .|.|.+..++. ..|+|.|||+||+++-++.+|++|+|+|.... .-
T Consensus 496 iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~----------GL 565 (603)
T COG4191 496 IRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGK----------GL 565 (603)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccccCcccC----------Cc
Confidence 36999999999999999753 68888865544 39999999999999999999999999986431 12
Q ss_pred chhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 96 GEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 96 G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+||+.. ..... +.+|.+... .....||.|++.
T Consensus 566 GLGLaIS----------~~i~~--------d~GGsL~v~--n~~~~Ga~F~i~ 598 (603)
T COG4191 566 GLGLAIS----------QNIAR--------DLGGSLEVA--NHPEGGASFTIE 598 (603)
T ss_pred chhHHHH----------HHHHH--------HhCCeEEee--cCCCCceEEEEE
Confidence 5555433 11111 235666652 444689999987
No 36
>KOG0019|consensus
Probab=99.29 E-value=8.9e-12 Score=111.13 Aligned_cols=180 Identities=22% Similarity=0.297 Sum_probs=117.8
Q ss_pred cCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCC--------------eeEEEEEcCCc-ceEEEEeCCCCCCcccHH
Q psy5349 5 ILPQSTIRQITTSQIITSVSTAVKELIENAIDAKAT--------------SIQINLMNQGL-DLIEVKDDGSGIPTQDVP 69 (213)
Q Consensus 5 ~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~--------------~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~ 69 (213)
+|-.-+++.+.|+ -...++|||.||-||..+ ...|++.++.. ..++|.|+|+||+.++|.
T Consensus 45 qLm~lii~s~YS~-----kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLv 119 (656)
T KOG0019|consen 45 QLMDIVAKSLYSH-----KEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDLV 119 (656)
T ss_pred hHHHHHHHHhhcc-----hHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHHHH
Confidence 3444445555444 567899999999998532 24455544332 499999999999999986
Q ss_pred HHHhhcccC--C-c-CCcc-cccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCe
Q psy5349 70 LICQAATTS--K-I-TDIT-DLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGT 143 (213)
Q Consensus 70 ~~~~~~~~s--k-~-~~~~-~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT 143 (213)
.-...-+.| | + .... ..+.....|.+|+|++|.+.+++ |+|+|++.... ++.|+...+|.........-.+||
T Consensus 120 nnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~gs~~v~~~~~~~rGT 198 (656)
T KOG0019|consen 120 NNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGRGSYEIAEASGLRTGT 198 (656)
T ss_pred hhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCCCceEEeeccCccccc
Confidence 433221111 1 1 1111 12334567999999999999998 99999998764 788888777777665445578999
Q ss_pred EEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHh--ccCCCeEEEEE----ECCEEEEEeCCC
Q psy5349 144 TVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLS--LIHCKLRVTLT----HNKCVIWQKNPV 205 (213)
Q Consensus 144 ~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~i~f~l~----~~~~~~~~~~~~ 205 (213)
.+++. ++.......+.+++++.+..|+ +.+| +.+. +.-+++|-.++.
T Consensus 199 ki~l~------------lKe~~~ey~ee~rikeiVKK~S~Fv~yP---I~l~~ek~N~tKpiW~rnp~ 251 (656)
T KOG0019|consen 199 KIVIH------------LKEGDCEFLEEKRIKEVVKKYSNFVSYP---IYLNGERVNNLKAIWTMNPK 251 (656)
T ss_pred eEEee------------ehhhhhhhccHhHHHHHHhhcccccccc---chhhhhhhhccCcccccCch
Confidence 99987 2211112356678889999887 4444 3322 223666655543
No 37
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.27 E-value=1.3e-11 Score=109.32 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.||++||++|... .|.|.+..++. ..|+|.|||+|||+++++.+|++|++.+.... ...+..|+|
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~------~~~~G~GLG 390 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARS------RQTGGSGLG 390 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCC------CCCCCCchH
Confidence 4789999999999999754 57777654433 38999999999999999999999987643211 122467999
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHH
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVR 157 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r 157 (213)
|+.+ +...+ .++|.+... +..+.||+|++. +|.+
T Consensus 391 L~iv----------k~iv~--------~~gG~i~i~--s~~~~Gt~f~i~-----lP~~ 424 (430)
T PRK11006 391 LAIV----------KHALS--------HHDSRLEIE--SEVGKGTRFSFV-----LPER 424 (430)
T ss_pred HHHH----------HHHHH--------HCCCEEEEE--ecCCCceEEEEE-----echH
Confidence 9887 44333 356776653 334679999998 6765
No 38
>PRK09303 adaptive-response sensory kinase; Validated
Probab=99.25 E-value=1.5e-11 Score=107.56 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEc-CC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCch
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMN-QG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGE 97 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~-~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~ 97 (213)
.+.+++.|||+||++|... .|.|.+.. .+ ...|+|.|||+|||+++++.+|++|++.+... ..+..|+
T Consensus 272 ~l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~~--------~~~G~GL 343 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRDE--------GTEGYGI 343 (380)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCCCC--------CCCcccc
Confidence 3789999999999999864 56666532 22 23799999999999999999999999765421 1245799
Q ss_pred hhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 98 ALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 98 gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
||+.+ +...+ .++|.+... +..+.||+|+++
T Consensus 344 GL~i~----------~~iv~--------~~gG~i~v~--s~~~~Gt~f~i~ 374 (380)
T PRK09303 344 GLSVC----------RRIVR--------VHYGQIWVD--SEPGQGSCFHFT 374 (380)
T ss_pred cHHHH----------HHHHH--------HcCCEEEEE--ecCCCccEEEEE
Confidence 99887 44333 356777652 334689999998
No 39
>PRK10604 sensor protein RstB; Provisional
Probab=99.24 E-value=1.5e-11 Score=109.15 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=74.6
Q ss_pred HHHHHHHHHHchhhhCCCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhhh
Q psy5349 23 VSTAVKELIENAIDAKATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNA 101 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s 101 (213)
+.+++.|||+||++|+...|.|++..++. ..|+|.|||.|||+++++.+|++|++...... ...|..|+||+.
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~------~~~~g~GLGL~i 393 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRD------RATGGCGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCC------CCCCCccchHHH
Confidence 67899999999999998888888864433 38999999999999999999999987533210 122456999987
Q ss_pred hhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 102 LCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 102 ~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+ +...+ .++|.+... +..+.||+|++.
T Consensus 394 v----------k~i~~--------~~gG~i~v~--s~~~~G~~f~i~ 420 (433)
T PRK10604 394 V----------HSIAL--------AMGGSVNCD--ESELGGARFSFS 420 (433)
T ss_pred H----------HHHHH--------HCCCEEEEE--ecCCCeeEEEEE
Confidence 7 43333 246666553 234679999998
No 40
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.23 E-value=2e-11 Score=110.91 Aligned_cols=98 Identities=24% Similarity=0.364 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHchhhhC------CCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCC
Q psy5349 22 SVSTAVKELIENAIDAK------ATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGF 94 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~------a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 94 (213)
.+.+++.||++||++|. ...|.|.+..++. ..|+|.|||.|||+++.+.+|++|+++|... .|.
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~---------~~g 502 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE---------PGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC---------CCC
Confidence 47789999999999983 3468888765443 4899999999999999999999999876432 245
Q ss_pred CchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 95 RGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 95 ~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+|+||+.+ +...+ .++|.+.. .+..+.||++++.
T Consensus 503 ~GlGL~iv----------k~iv~--------~~~G~i~v--~s~~~~Gt~f~i~ 536 (545)
T PRK15053 503 HGIGLYLI----------ASYVT--------RCGGVITL--EDNDPCGTLFSIF 536 (545)
T ss_pred ceeCHHHH----------HHHHH--------HcCCEEEE--EECCCCeEEEEEE
Confidence 79999988 44433 24677665 2445789999998
No 41
>PRK10364 sensor protein ZraS; Provisional
Probab=99.21 E-value=2.9e-11 Score=107.73 Aligned_cols=95 Identities=24% Similarity=0.302 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHchhhhCC--CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKA--TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a--~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.||++||++|.+ ..|.|.+..++. ..|+|.|||+|||++.++.+|++|+++|. +..|+|
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~------------~g~GlG 415 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA------------EGTGLG 415 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCC------------CCCccc
Confidence 478999999999999954 468887765443 38999999999999999999999987653 246999
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 416 L~iv----------~~~v~--------~~gG~i~i~--s~~~~Gt~f~i~ 445 (457)
T PRK10364 416 LAVV----------HNIVE--------QHGGTIQVA--SQEGKGATFTLW 445 (457)
T ss_pred HHHH----------HHHHH--------HCCCEEEEE--eCCCCcEEEEEE
Confidence 9987 44333 246776652 334679999998
No 42
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.18 E-value=5.1e-11 Score=107.40 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=73.3
Q ss_pred HHHHHHHHHHchhhhCCCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhhh
Q psy5349 23 VSTAVKELIENAIDAKATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNA 101 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s 101 (213)
+.+++.|||+||++|+...|.|.+..++. ..|+|.|||.||++++++.+|++|++..... +..|+||+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~----------~G~GLGL~I 448 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRADTLR----------PGQGLGLSV 448 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCC----------CCcchhHHH
Confidence 67899999999999998888888764433 3899999999999999999999987643211 246999988
Q ss_pred hhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 102 LCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 102 ~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+ +...+ .++|.+... +..+.||+|++.
T Consensus 449 v----------k~iv~--------~~gG~i~v~--s~~~~Gt~f~i~ 475 (485)
T PRK10815 449 A----------REITE--------QYEGKISAG--DSPLGGARMEVI 475 (485)
T ss_pred H----------HHHHH--------HcCCEEEEE--ECCCCEEEEEEE
Confidence 7 44333 356776653 334579999998
No 43
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.17 E-value=7.1e-11 Score=108.97 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=73.8
Q ss_pred HHHHHHHHHHchhhhCCC--eeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 23 VSTAVKELIENAIDAKAT--SIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
+.+++.|||+||+++.+. +|.|.+..+... .+.|.|+|+|||+++++.+|.+|++....+ + + ..-|+||
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~--~-----~-~G~GLGL 847 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKES--A-----T-RGVGLGL 847 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCC--C-----C-CCccccH
Confidence 579999999999999865 577776554443 899999999999999999999999864321 1 1 2458888
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+ +...+ .++|.+.... ..++|++|.+.
T Consensus 848 sIc----------~~iv~--------ahgG~I~a~~--~~~gGa~f~~~ 876 (890)
T COG2205 848 AIC----------RGIVE--------AHGGTISAEN--NPGGGAIFVFT 876 (890)
T ss_pred HHH----------HHHHH--------HcCCeEEEEE--cCCCceEEEEE
Confidence 877 44444 3677777633 55789999998
No 44
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.15 E-value=1.2e-10 Score=102.97 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHchhhhCC--CeeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKA--TSIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a--~~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+..++.||++||++|+. ..|.|.+..++.. .|+|.|||.|||++.+..+|++|++++..... ..+..|+|
T Consensus 353 ~l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~------~~~g~GlG 426 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSN------SGEGTGLG 426 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCC------CCCCcccc
Confidence 367889999999999984 3688888655443 89999999999999999999999987653211 12457999
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+ .++|.+... . .+.||+|++.
T Consensus 427 L~i~----------~~~~~--------~~~G~~~~~--~-~~~G~~~~~~ 455 (457)
T TIGR01386 427 LAIV----------RSIME--------AHGGRASAE--S-PDGKTRFILR 455 (457)
T ss_pred HHHH----------HHHHH--------HCCCEEEEE--e-CCCceEEEEe
Confidence 9987 44333 246776653 2 4679999987
No 45
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.14 E-value=1.1e-10 Score=103.70 Aligned_cols=101 Identities=14% Similarity=0.224 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.|||+||+++... .|.|.+..++. ..|+|.|||+|||+++++.+|++|++.+.... ...|..|+|
T Consensus 352 ~l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~------~~~~g~GlG 425 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRN------RASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcC------CCCCCCcHH
Confidence 3678999999999999754 57777765443 38999999999999999999999987653221 123467999
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 426 L~iv----------~~i~~--------~~~G~l~~~--s~~~~G~~~~i~ 455 (466)
T PRK10549 426 LAIC----------LNIVE--------AHNGRIIAA--HSPFGGVSITVE 455 (466)
T ss_pred HHHH----------HHHHH--------HcCCEEEEE--ECCCCeEEEEEE
Confidence 9877 33333 245665553 234579999998
No 46
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.13 E-value=1.2e-10 Score=100.31 Aligned_cols=96 Identities=23% Similarity=0.312 Sum_probs=70.3
Q ss_pred HHHHHHHHHHchhhhCC--CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 23 VSTAVKELIENAIDAKA--TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a--~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
+..++.|||+||++|.. ..|.|.+..++. ..|+|.|||.||++++++.+|++|++.+.. .+..|+||
T Consensus 248 l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GlGL 317 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDSR----------YGGIGLGL 317 (356)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCCC----------CCCcCHHH
Confidence 56899999999999974 458887754433 389999999999999999999998754221 13569999
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCC-CCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFP-NGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~GT~V~v~ 148 (213)
+.+ +...+ .++|.+... +..+ .||+|++.
T Consensus 318 ~i~----------~~i~~--------~~gg~i~i~--s~~~~~Gt~~~i~ 347 (356)
T PRK10755 318 SIV----------SRITQ--------LHHGQFFLQ--NRQERSGTRAWVW 347 (356)
T ss_pred HHH----------HHHHH--------HCCCEEEEE--ECCCCCeEEEEEE
Confidence 877 33333 245666552 3334 79999998
No 47
>KOG0020|consensus
Probab=99.13 E-value=3.1e-10 Score=99.40 Aligned_cols=148 Identities=22% Similarity=0.324 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHchhhhCCC----------------eeEEEEEcCC-cceEEEEeCCCCCCcccHHH-HHh--hccc----
Q psy5349 22 SVSTAVKELIENAIDAKAT----------------SIQINLMNQG-LDLIEVKDDGSGIPTQDVPL-ICQ--AATT---- 77 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~----------------~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~-~~~--~~~~---- 77 (213)
+-...++|||.||-||-.+ ...|.+..+. ...+.|.|.|+||+.++|-. ++. ...|
T Consensus 95 NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl 174 (785)
T KOG0020|consen 95 NKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFL 174 (785)
T ss_pred hhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHH
Confidence 3456899999999998532 2444454332 23899999999999998753 221 1111
Q ss_pred CCcCCcccccc--cccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEec-c--CCCCCCeEEEEeccc
Q psy5349 78 SKITDITDLDS--LSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQ-P--SHFPNGTTVSVKNLF 151 (213)
Q Consensus 78 sk~~~~~~~~~--~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~-~--~~~~~GT~V~v~~lf 151 (213)
.|..+..+..+ ...+|.+|+|+++++.+++ |.|+|++.+. ..+.|.-+.+ ...... | .+-++||.|++.
T Consensus 175 ~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD-~QyiWESdan-~FsvseDprg~tL~RGt~ItL~--- 249 (785)
T KOG0020|consen 175 EKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDD-SQYIWESDAN-SFSVSEDPRGNTLGRGTEITLY--- 249 (785)
T ss_pred HHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCc-cceeeeccCc-ceeeecCCCCCcccCccEEEEE---
Confidence 12222222221 2457999999999999999 9999998775 3456655543 333322 2 244799999987
Q ss_pred cCchHHHHHhhcchhhHHHHHHHHHHHHHHhc
Q psy5349 152 HNLPVRKQYLSSKNRMLEELRKVERVVKCLSL 183 (213)
Q Consensus 152 ~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (213)
++..+.+..+.+.+++++..|+-
T Consensus 250 ---------LkeEA~dyLE~dtlkeLvkkYSq 272 (785)
T KOG0020|consen 250 ---------LKEEAGDYLEEDTLKELVKKYSQ 272 (785)
T ss_pred ---------ehhhhhhhcchhHHHHHHHHHHH
Confidence 44555556778899999999984
No 48
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.12 E-value=1.3e-10 Score=111.68 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHchhhhCC-CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 22 SVSTAVKELIENAIDAKA-TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
.+.+++.|||+||+++.. ..|.|++...+. ..|+|.|||+||++++++.+|++|++.+.. .+..|+||
T Consensus 513 ~l~~il~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL 582 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH----------SQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC----------CCCCchHH
Confidence 378999999999999974 468888764433 389999999999999999999999876532 14579999
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+ +...+ .++|.+.. .+..+.||+|++.
T Consensus 583 ~i~----------~~~~~--------~~gG~i~i--~s~~~~Gt~f~i~ 611 (921)
T PRK15347 583 TIA----------SSLAK--------MMGGELTL--FSTPGVGSCFSLV 611 (921)
T ss_pred HHH----------HHHHH--------HcCCEEEE--EecCCCceEEEEE
Confidence 877 33222 23455444 2334567777776
No 49
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.12 E-value=1.5e-10 Score=102.55 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=73.0
Q ss_pred HHHHHHHHHHchhhhCCCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhhh
Q psy5349 23 VSTAVKELIENAIDAKATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNA 101 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s 101 (213)
+.+++.|||+||++++...|.|.+..++. ..|+|.|||.||++++++.+|++|++...... ...+..|+||+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~------~~~~g~GlGL~i 427 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARD------RESGGTGLGLAI 427 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccC------CCCCCcchhHHH
Confidence 57789999999999998888888764433 38999999999999999999999987542211 112456999987
Q ss_pred hhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 102 LCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 102 ~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+ +.... .++|.+... +..+.||+|++.
T Consensus 428 v----------~~~v~--------~~~G~l~~~--s~~~~Gt~~~i~ 454 (461)
T PRK09470 428 V----------ENAIQ--------QHRGWVKAE--DSPLGGLRLTIW 454 (461)
T ss_pred H----------HHHHH--------HCCCEEEEE--ECCCCeEEEEEE
Confidence 7 33222 245666553 233579999998
No 50
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.12 E-value=1.7e-10 Score=104.22 Aligned_cols=95 Identities=28% Similarity=0.357 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHchhhhCC----CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCc
Q psy5349 22 SVSTAVKELIENAIDAKA----TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRG 96 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a----~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 96 (213)
.+.+++.||++||++|.. ..|.|++..++. ..|+|.|||+|||+++.+.+|++|+++|.. ..|
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~------------g~G 500 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGS------------NRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCC------------CCc
Confidence 478999999999999853 358887764433 389999999999999999999998876532 469
Q ss_pred hhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 97 EALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 97 ~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+||+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 501 lGL~iv----------~~iv~--------~~~G~i~v~--s~~~~G~~f~i~ 532 (542)
T PRK11086 501 VGLYLV----------KQSVE--------NLGGSIAVE--SEPGVGTQFFVQ 532 (542)
T ss_pred CcHHHH----------HHHHH--------HcCCEEEEE--eCCCCcEEEEEE
Confidence 999887 44333 246776653 334689999988
No 51
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.11 E-value=1.7e-10 Score=101.82 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHchhhhCCCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 22 SVSTAVKELIENAIDAKATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
.+..++.||++||++++...|.|++..++. ..|+|.|||.||++++++.+|++|+...... ..+..|+||+
T Consensus 331 ~l~~il~NLl~NA~k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~--------~~~g~GlGL~ 402 (435)
T PRK09467 331 AIKRALANLVVNAARYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSAR--------GSSGTGLGLA 402 (435)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCC--------CCCCeehhHH
Confidence 357899999999999998889998865433 3899999999999999999999998643211 1135789998
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +...+ .++|.+... +....||+|++.
T Consensus 403 iv----------~~i~~--------~~~g~l~i~--~~~~~G~~~~i~ 430 (435)
T PRK09467 403 IV----------KRIVD--------QHNGKVELG--NSEEGGLSARAW 430 (435)
T ss_pred HH----------HHHHH--------HCCCEEEEE--ECCCCcEEEEEE
Confidence 77 33333 235665542 234679999987
No 52
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.08 E-value=2.9e-10 Score=94.59 Aligned_cols=97 Identities=24% Similarity=0.338 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHchhhhCC-CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 22 SVSTAVKELIENAIDAKA-TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
.+.+++.+|+.||++|.. ..|.|.+...+. ..++|.|||.||+++.++.+|++|++++.... ..|+||
T Consensus 228 ~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----------g~GlGL 297 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTPGGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----------GTGLGL 297 (336)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----------CCCccH
Confidence 478899999999999995 889998875442 48999999999999999999999999876431 458888
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+ +.... .++|.+.. .+..+.||++++.
T Consensus 298 ~i~----------~~~~~--------~~~g~i~~--~~~~~~Gt~~~i~ 326 (336)
T COG0642 298 AIV----------KRIVE--------LHGGTISV--ESEPGKGTTFTIR 326 (336)
T ss_pred HHH----------HHHHH--------HcCCEEEE--EecCCCceEEEEE
Confidence 877 44212 24566444 2233578999888
No 53
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.07 E-value=3.7e-10 Score=107.01 Aligned_cols=88 Identities=20% Similarity=0.269 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHchhhhCC-CeeEEEEEcC--CcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKA-TSIQINLMNQ--GLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-~~I~I~~~~~--~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.|||.||++|.. ..|.|.+... +...|+|.|||+|||+++++.+|++|++.|.... ....+..|+|
T Consensus 398 ~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~-----~~~~~GtGLG 472 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHG-----GKPATGTGIG 472 (779)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCC-----CCCCCCcchH
Confidence 478999999999999985 3577776533 2248999999999999999999999998753221 1123567999
Q ss_pred hhhhhcc-----CeeEEEEee
Q psy5349 99 LNALCQI-----GEVSVTTKT 114 (213)
Q Consensus 99 l~s~~~~-----s~v~v~s~~ 114 (213)
|+.+..+ +.+++.|..
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 8876433 346666543
No 54
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.06 E-value=3.2e-10 Score=106.17 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEcCCc-ceEEEEeCCCCCCccc-HHHHHhhcccCCcCCcccccccccCCCCch
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMNQGL-DLIEVKDDGSGIPTQD-VPLICQAATTSKITDITDLDSLSSYGFRGE 97 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~-~~i~V~DnG~GI~~~~-l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~ 97 (213)
.+.+++.||++||++|... .|.|++..++. ..|+|.|||+|||++. .+.+|++|+++|. +..|+
T Consensus 579 ~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------------~G~GL 646 (679)
T TIGR02916 579 RLERVLGHLVQNALEATPGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------------CCcch
Confidence 3778999999999999753 68888864433 4899999999999999 8899999987653 24699
Q ss_pred hhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 98 ALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 98 gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
||+.+ +...+ .++|.+... +..+.||+|+++
T Consensus 647 GL~i~----------~~iv~--------~~gG~i~v~--s~~g~Gt~f~i~ 677 (679)
T TIGR02916 647 GVYEC----------RQYVE--------EIGGRIEVE--STPGQGTIFTLV 677 (679)
T ss_pred hHHHH----------HHHHH--------HcCCEEEEE--ecCCCceEEEEE
Confidence 99888 44443 356776653 344689999987
No 55
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.05 E-value=4.4e-10 Score=107.74 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHchhhhCCC-eeEEEEEcC----CcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCc
Q psy5349 22 SVSTAVKELIENAIDAKAT-SIQINLMNQ----GLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRG 96 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~-~I~I~~~~~----~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 96 (213)
.+.+++.|||.||+++... .|.|.+... +...|+|.|+|+|||+++++.+|++|++.+... ...+..|
T Consensus 565 ~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~-------~~~~GtG 637 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGD-------RYGKASG 637 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCC-------CCCCCcC
Confidence 4789999999999998753 577766421 223899999999999999999999998765322 1123568
Q ss_pred hhhhhhh
Q psy5349 97 EALNALC 103 (213)
Q Consensus 97 ~gl~s~~ 103 (213)
+||+.+.
T Consensus 638 LGLaI~k 644 (894)
T PRK10618 638 LTFFLCN 644 (894)
T ss_pred hhHHHHH
Confidence 8987663
No 56
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.04 E-value=6.9e-10 Score=98.38 Aligned_cols=100 Identities=24% Similarity=0.322 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHchhhhCC--CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKA--TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a--~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+..++.|||+||++++. ..|.|++...+. ..|+|.|||.|||+++++.+|++|++.+... ...+..|+|
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~-------~~~~~~GlG 440 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPA-------NGRKSTGLG 440 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCC-------CCCCCcchh
Confidence 377899999999999874 468888864443 3899999999999999999999998764311 112356999
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +.... .++|.+... +..+.||+|++.
T Consensus 441 L~i~----------~~~~~--------~~~G~i~i~--s~~~~Gt~v~i~ 470 (475)
T PRK11100 441 LAFV----------REVAR--------LHGGEVTLR--NRPEGGVLATLT 470 (475)
T ss_pred HHHH----------HHHHH--------HCCCEEEEE--EcCCCeEEEEEE
Confidence 9887 33332 235665542 234579999987
No 57
>PRK10490 sensor protein KdpD; Provisional
Probab=99.03 E-value=4.9e-10 Score=107.77 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
-+.+++.|||+||++|... .|.|.+..++. ..|+|.|||+|||+++++.+|++|++.+... ..+..|+|
T Consensus 778 ~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~--------~~~G~GLG 849 (895)
T PRK10490 778 LFERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES--------AIPGVGLG 849 (895)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC--------CCCCccHH
Confidence 3789999999999999754 57777754433 3899999999999999999999998765322 12346899
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+ .++|.+... +..+.||++++.
T Consensus 850 L~Iv----------k~ive--------~hGG~I~v~--s~~~~Gt~f~i~ 879 (895)
T PRK10490 850 LAIC----------RAIVE--------VHGGTIWAE--NRPEGGACFRVT 879 (895)
T ss_pred HHHH----------HHHHH--------HcCCEEEEE--ECCCCeEEEEEE
Confidence 9877 44443 356776653 334579999998
No 58
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.02 E-value=6.8e-10 Score=106.77 Aligned_cols=83 Identities=27% Similarity=0.349 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHchhhhCC-CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 22 SVSTAVKELIENAIDAKA-TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
.+.+++.|||.||++|.. ..|.|.+..++. ..|.|.|||+|||+++++.+|++|++.... .|..|+||
T Consensus 561 ~l~qil~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL 630 (914)
T PRK11466 561 RIRQVITNLLSNALRFTDEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK----------RGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC----------CCCCcccH
Confidence 367899999999999974 468887765443 389999999999999999999999864321 24579998
Q ss_pred hhhhcc-----CeeEEEEee
Q psy5349 100 NALCQI-----GEVSVTTKT 114 (213)
Q Consensus 100 ~s~~~~-----s~v~v~s~~ 114 (213)
+.+..+ +++++.|..
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~ 650 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTP 650 (914)
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 866433 236666654
No 59
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.00 E-value=7.6e-10 Score=105.76 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHchhhhCC--CeeEEEEEcC---------------Cc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCc
Q psy5349 22 SVSTAVKELIENAIDAKA--TSIQINLMNQ---------------GL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDI 83 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a--~~I~I~~~~~---------------~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~ 83 (213)
.+.+++.||+.||++|.. ..|.|.+... +. ..|.|.|||+||++++++.+|++|++++.
T Consensus 560 ~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~--- 636 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA--- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC---
Confidence 378999999999999864 4577766432 22 37999999999999999999999987653
Q ss_pred ccccccccCCCCchhhhhhhcc-----CeeEEEEee
Q psy5349 84 TDLDSLSSYGFRGEALNALCQI-----GEVSVTTKT 114 (213)
Q Consensus 84 ~~~~~~~~~G~~G~gl~s~~~~-----s~v~v~s~~ 114 (213)
+..|+||+.+..+ +.+++.|..
T Consensus 637 ---------~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 637 ---------GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred ---------CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 3568998866433 347777654
No 60
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=98.96 E-value=1.7e-09 Score=104.51 Aligned_cols=74 Identities=23% Similarity=0.260 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHchhhhCC-CeeEEEEEc-CCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKA-TSIQINLMN-QGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-~~I~I~~~~-~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.|||.||+++.. ..|.|.+.. ++. ..|+|.|+|+|||+++++.+|++|++.+.. ...|..|+|
T Consensus 579 ~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--------~~~~g~GLG 650 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADGR--------RRSGGTGLG 650 (968)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCCC--------CCCCCccHH
Confidence 478899999999999975 357776643 223 479999999999999999999999887621 123567999
Q ss_pred hhhhh
Q psy5349 99 LNALC 103 (213)
Q Consensus 99 l~s~~ 103 (213)
|+.+.
T Consensus 651 L~i~~ 655 (968)
T TIGR02956 651 LAISQ 655 (968)
T ss_pred HHHHH
Confidence 98763
No 61
>PRK10337 sensor protein QseC; Provisional
Probab=98.96 E-value=1.4e-09 Score=96.39 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=68.4
Q ss_pred HHHHHHHHHHchhhhCCC--eeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 23 VSTAVKELIENAIDAKAT--SIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
+..++.|||+||++++.. .|.|.+... .|+|.|||.|||+++++.+|++|++.+.. ..+..|+||+
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~~~---~i~i~D~G~Gi~~~~~~~if~~f~~~~~~---------~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLNAR---NFTVRDNGPGVTPEALARIGERFYRPPGQ---------EATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEee---EEEEEECCCCCCHHHHHHhcccccCCCCC---------CCCccchHHH
Confidence 667899999999999865 466666432 79999999999999999999999865321 1135799998
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +...+ .++|.+... +..+.||+|++.
T Consensus 421 iv----------~~i~~--------~~gg~l~~~--s~~~~G~~~~i~ 448 (449)
T PRK10337 421 IV----------RRIAK--------LHGMNVSFG--NAPEGGFEAKVS 448 (449)
T ss_pred HH----------HHHHH--------HcCCEEEEE--ecCCCeEEEEEe
Confidence 87 43333 245666542 233569999875
No 62
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=98.94 E-value=2.4e-09 Score=90.12 Aligned_cols=100 Identities=22% Similarity=0.296 Sum_probs=70.8
Q ss_pred HHHHHHHHHHchhhhCCC--eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 23 VSTAVKELIENAIDAKAT--SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
+..++.+|+.||++++.. .|.|.+...+. ..+.|.|||.|||++.++.+|.+|++.+.... ...+..|+||
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~------~~~~g~glGL 303 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRS------RDTGGTGLGL 303 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecCcccc------cCCCCCcccH
Confidence 678999999999998753 57777654332 48999999999999999999999886443211 1123468998
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 304 ~~~----------~~~~~--------~~gG~i~~~--s~~~~Gt~~~i~ 332 (333)
T TIGR02966 304 AIV----------KHVLS--------RHHARLEIE--SELGKGSTFSFI 332 (333)
T ss_pred HHH----------HHHHH--------HCCCEEEEE--ecCCCCeEEEEE
Confidence 877 33333 246666552 334679999885
No 63
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=98.94 E-value=2.3e-09 Score=100.76 Aligned_cols=102 Identities=15% Similarity=0.273 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.|||+||+++... .|.|.+..++. ..|+|.|||.||++++++.+|++|++.+..... ..+..|+|
T Consensus 597 ~L~~il~NLI~NAik~s~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~------~~~g~GLG 670 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQ------DQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCC------CCCCccHH
Confidence 3788999999999999753 57777764433 389999999999999999999999876532211 11246999
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+ .++|.+..... ..+.||+|++.
T Consensus 671 L~Iv----------r~Iv~--------~~gG~I~v~s~-~~g~Gt~f~I~ 701 (703)
T TIGR03785 671 LYIV----------RLIAD--------FHQGRIQAENR-QQNDGVVFRIS 701 (703)
T ss_pred HHHH----------HHHHH--------HcCCEEEEEEC-CCCCeEEEEEE
Confidence 9887 44333 24666655322 22479999987
No 64
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=98.92 E-value=2.4e-09 Score=103.34 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHchhhhCCC-eeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 22 SVSTAVKELIENAIDAKAT-SIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~-~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
.+.+++.|||.||+++... .|.|.+..++ ...|+|.|+|.||++++++.+|++|++.+.... ...+..|+||
T Consensus 562 ~L~qvl~NLl~NAik~t~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~------~~~~GtGLGL 635 (924)
T PRK10841 562 RLQQVISNLLSNAIKFTDTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQ------RNFQGTGLGL 635 (924)
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCC------CCCCCeehhH
Confidence 3779999999999999743 5777665433 348999999999999999999999987543211 1224568998
Q ss_pred hhhh
Q psy5349 100 NALC 103 (213)
Q Consensus 100 ~s~~ 103 (213)
+.+.
T Consensus 636 ~I~k 639 (924)
T PRK10841 636 AICE 639 (924)
T ss_pred HHHH
Confidence 8763
No 65
>PRK09835 sensor kinase CusS; Provisional
Probab=98.90 E-value=3.9e-09 Score=94.12 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.||++||+++... .|.|.+..++. ..|+|.|||.|||+++++.+|++|++...... ...+..|+|
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~------~~~~g~GlG 448 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQ------RKGEGSGIG 448 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCC------CCCCCcchH
Confidence 4789999999999999743 58777754333 38999999999999999999999987643211 112356999
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+ .++|.+.... . +.||+|++.
T Consensus 449 L~i~----------~~i~~--------~~~g~i~~~s--~-~~g~~~~i~ 477 (482)
T PRK09835 449 LAIV----------KSIVV--------AHKGTVAVTS--D-ARGTRFVIS 477 (482)
T ss_pred HHHH----------HHHHH--------HCCCEEEEEE--C-CCcEEEEEE
Confidence 9877 44333 2456665532 2 359999988
No 66
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=98.87 E-value=3.6e-09 Score=95.93 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEc-CCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCch
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMN-QGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGE 97 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~-~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~ 97 (213)
.+.+++.||+.||+++... .|.|.+.. ++. ..|+|.|||+|||++.++.+|++|++++. +..|+
T Consensus 500 ~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~------------~g~gl 567 (607)
T PRK11360 500 LLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA------------KGTGL 567 (607)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC------------CCCch
Confidence 4788999999999998654 57776643 233 48999999999999999999999987653 24699
Q ss_pred hhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 98 ALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 98 gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
||+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 568 GL~~~----------~~~~~--------~~~G~i~~~--s~~~~Gt~~~i~ 598 (607)
T PRK11360 568 GLALS----------QRIIN--------AHGGDIEVE--SEPGVGTTFTLY 598 (607)
T ss_pred hHHHH----------HHHHH--------HcCCEEEEE--EcCCCceEEEEE
Confidence 99877 44333 246666652 344679999998
No 67
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.87 E-value=5.8e-09 Score=100.19 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHchhhhCCC-eeEEEEE--c--CC--cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCC
Q psy5349 22 SVSTAVKELIENAIDAKAT-SIQINLM--N--QG--LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGF 94 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~-~I~I~~~--~--~~--~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 94 (213)
.+.+++.|||.||+++... .|.|.+. . ++ ...|+|.|||+|||+++++.+|++|+...... ....|.
T Consensus 408 ~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~------~~~~~g 481 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASI------SRRHGG 481 (919)
T ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCC------CCCCCC
Confidence 3778999999999999753 4544442 2 11 13699999999999999999999998653221 112356
Q ss_pred Cchhhhhhh
Q psy5349 95 RGEALNALC 103 (213)
Q Consensus 95 ~G~gl~s~~ 103 (213)
.|+||+.+.
T Consensus 482 ~GLGL~i~~ 490 (919)
T PRK11107 482 TGLGLVITQ 490 (919)
T ss_pred cchhHHHHH
Confidence 799998763
No 68
>PRK13557 histidine kinase; Provisional
Probab=98.84 E-value=5.5e-09 Score=94.11 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=58.8
Q ss_pred HHHHHHHHHHchhhhCCC--eeEEEEEc---------------CC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcc
Q psy5349 23 VSTAVKELIENAIDAKAT--SIQINLMN---------------QG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDIT 84 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~--~I~I~~~~---------------~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~ 84 (213)
+.+++.||+.||++|... .|.|.... .+ ...|+|.|||.||+++..+.+|++|++++..
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~--- 354 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE--- 354 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC---
Confidence 778999999999998753 45554421 12 2379999999999999999999999876532
Q ss_pred cccccccCCCCchhhhhhhc----c-CeeEEEEee
Q psy5349 85 DLDSLSSYGFRGEALNALCQ----I-GEVSVTTKT 114 (213)
Q Consensus 85 ~~~~~~~~G~~G~gl~s~~~----~-s~v~v~s~~ 114 (213)
.+..|+||+.+.. + +.+.+.+..
T Consensus 355 -------~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 355 -------GKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred -------CCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 1356888875532 2 347777654
No 69
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=98.84 E-value=6e-09 Score=86.96 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHchhhhCCC------eeEE--------EEEcCC---cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcc
Q psy5349 22 SVSTAVKELIENAIDAKAT------SIQI--------NLMNQG---LDLIEVKDDGSGIPTQDVPLICQAATTSKITDIT 84 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~------~I~I--------~~~~~~---~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~ 84 (213)
.+.|++-||+.||..|.+. .|.+ ++...- ...++|.|||+|+|++-.+.+|.++.++|.+
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~--- 317 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREG--- 317 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCC---
Confidence 4789999999999999872 3333 231110 1268999999999999999999999998764
Q ss_pred cccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHH
Q psy5349 85 DLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRK 158 (213)
Q Consensus 85 ~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~ 158 (213)
..|+||+.+. .... .|+|.+.. .+ .+..|++.+. +|.++
T Consensus 318 ---------GsGLGLala~----------~li~--------qH~G~Ie~--~S-~Pg~T~Frvl-----lP~~~ 356 (363)
T COG3852 318 ---------GTGLGLALAQ----------NLID--------QHGGKIEF--DS-WPGRTVFRVL-----LPIRK 356 (363)
T ss_pred ---------CccccHHHHH----------HHHH--------hcCCEEEE--ec-cCCceEEEEE-----eeccc
Confidence 4689988772 2222 35677766 22 3457999987 67654
No 70
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=98.83 E-value=6.3e-09 Score=102.87 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHchhhhCCC-eeEEEEE----cCCc--ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCC
Q psy5349 22 SVSTAVKELIENAIDAKAT-SIQINLM----NQGL--DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGF 94 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~-~I~I~~~----~~~~--~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 94 (213)
.+.+++.|||.||++|... .|.|.+. .++. ..|+|.|||+|||+++++.+|++|++++... ..+.
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--------~~~G 899 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR--------QQTG 899 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC--------CCCC
Confidence 4789999999999999754 3444431 1221 2689999999999999999999998765422 1235
Q ss_pred Cchhhhhhh
Q psy5349 95 RGEALNALC 103 (213)
Q Consensus 95 ~G~gl~s~~ 103 (213)
.|+||+.+.
T Consensus 900 ~GLGL~i~~ 908 (1197)
T PRK09959 900 SGLGLMICK 908 (1197)
T ss_pred cCchHHHHH
Confidence 799998763
No 71
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=98.83 E-value=5.6e-09 Score=89.45 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHchhhhC-C--CeeEEEEEcC------C-----cceEEEEeCCCCCCcccHHHHHhhcccCCcCCccccc
Q psy5349 22 SVSTAVKELIENAIDAK-A--TSIQINLMNQ------G-----LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLD 87 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~-a--~~I~I~~~~~------~-----~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~ 87 (213)
.+.+++.||++||++|. . ..|.|.+... + ...|.|.|||.||+++..+.+|.+|++++.
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~------- 309 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE------- 309 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------
Confidence 37899999999999986 3 3466654321 0 126899999999999999999999987653
Q ss_pred ccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 88 SLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 88 ~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+..|+||+.+ +...+ .++|.+... +.. .||+|++.
T Consensus 310 -----~g~GlGL~i~----------~~iv~--------~~gG~i~~~--s~~-~~~~f~i~ 344 (348)
T PRK11073 310 -----GGTGLGLSIA----------RNLID--------QHSGKIEFT--SWP-GHTEFSVY 344 (348)
T ss_pred -----CCccCCHHHH----------HHHHH--------HcCCeEEEE--ecC-CceEEEEE
Confidence 2469998877 44333 246776653 222 36888887
No 72
>PRK10547 chemotaxis protein CheA; Provisional
Probab=98.72 E-value=2.2e-08 Score=93.02 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=48.6
Q ss_pred HHHHHHHchhhhCC--------------CeeEEEEEcCCc-ceEEEEeCCCCCCcccHH---------------------
Q psy5349 26 AVKELIENAIDAKA--------------TSIQINLMNQGL-DLIEVKDDGSGIPTQDVP--------------------- 69 (213)
Q Consensus 26 ~v~eLi~NA~DA~a--------------~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~--------------------- 69 (213)
.+.+||.||+|++. ..|.|.+...+. ..|+|.|||.||+++.+.
T Consensus 389 pL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~ 468 (670)
T PRK10547 389 PLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGM 468 (670)
T ss_pred HHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHH
Confidence 36799999999972 248887765443 389999999999987653
Q ss_pred HHHhhcccCCcCCcccccccccCCCCchhhhhh
Q psy5349 70 LICQAATTSKITDITDLDSLSSYGFRGEALNAL 102 (213)
Q Consensus 70 ~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~ 102 (213)
.+|.++++++... .....+|+||..+
T Consensus 469 lIF~pgfst~~~~-------~~~sGrGvGL~iV 494 (670)
T PRK10547 469 LIFAPGFSTAEQV-------TDVSGRGVGMDVV 494 (670)
T ss_pred HhhcCCccccccc-------ccCCCCchhHHHH
Confidence 4677766554321 1123579998765
No 73
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=98.70 E-value=2.9e-08 Score=89.36 Aligned_cols=95 Identities=21% Similarity=0.343 Sum_probs=73.7
Q ss_pred HHHHHHHHHHchhhhCCC---------eeEEEEEc-CCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccC
Q psy5349 23 VSTAVKELIENAIDAKAT---------SIQINLMN-QGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSY 92 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~---------~I~I~~~~-~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~ 92 (213)
+-|++-||+.||.+|... .|.++... ++...+.|.|||.|.|.+++++++++|.|.+..
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~K----------- 669 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREK----------- 669 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccc-----------
Confidence 679999999999998643 26777754 344489999999999999999999999998754
Q ss_pred CCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 93 GFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 93 G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
..|+||+.+ |+..+ +|+|.+...... ..+|..|.+.
T Consensus 670 -GTGLGLAiV----------KkIvE--------eHGG~leL~da~-d~~GA~i~i~ 705 (712)
T COG5000 670 -GTGLGLAIV----------KKIVE--------EHGGRLELHNAP-DFDGAMIRIK 705 (712)
T ss_pred -cccccHHHH----------HHHHH--------hcCCeEEecCCC-CCCCcEEEEE
Confidence 359999988 77666 456666553322 4569999987
No 74
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=98.70 E-value=8.6e-08 Score=66.21 Aligned_cols=73 Identities=26% Similarity=0.360 Sum_probs=51.6
Q ss_pred HHHHHHHHHHchhhhCC---CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 23 VSTAVKELIENAIDAKA---TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a---~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
+..++.||++||++++. ..|.|.+..++. ..|.|.|+|.||++..++..+.++...... ...+..|.|
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~~~~--------~~~~~~g~g 72 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDGSRS--------RKGGGTGLG 72 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcCCCC--------CCCCccccC
Confidence 35789999999999987 457777754432 389999999999999998888765111100 112356888
Q ss_pred hhhhh
Q psy5349 99 LNALC 103 (213)
Q Consensus 99 l~s~~ 103 (213)
++.+.
T Consensus 73 l~~~~ 77 (103)
T cd00075 73 LSIVK 77 (103)
T ss_pred HHHHH
Confidence 87663
No 75
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=98.66 E-value=1.5e-07 Score=66.08 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+..++.|+++||+++... .|.|.+..++ ...+.|.|+|.||+.+++..++..+...+... ...+..|.|
T Consensus 5 ~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~g 77 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRS-------RKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCCC-------CCCCccccc
Confidence 4678999999999999875 7888876543 34899999999999999999888776554210 112356888
Q ss_pred hhhhh
Q psy5349 99 LNALC 103 (213)
Q Consensus 99 l~s~~ 103 (213)
|+.+.
T Consensus 78 l~~~~ 82 (111)
T smart00387 78 LSIVK 82 (111)
T ss_pred HHHHH
Confidence 88773
No 76
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=98.64 E-value=1.8e-07 Score=70.07 Aligned_cols=71 Identities=27% Similarity=0.299 Sum_probs=51.0
Q ss_pred ccCHHHHHHHHHHchhhhC-----CCeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCC
Q psy5349 20 ITSVSTAVKELIENAIDAK-----ATSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYG 93 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~DA~-----a~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G 93 (213)
+..+..++.|++.||+.++ ...|.|.+...+ ...++|.|+|.||+ ..+.++.++++++.. .+
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~--~~~~~~~~~~~~~~~----------~~ 104 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE--NLEEAREPLYTSKPE----------LE 104 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC--chhHhhCCCcccCCC----------CC
Confidence 3457789999999999875 235888775433 34899999999998 466778777654321 12
Q ss_pred CCchhhhhh
Q psy5349 94 FRGEALNAL 102 (213)
Q Consensus 94 ~~G~gl~s~ 102 (213)
..|+||+.+
T Consensus 105 ~~GlGL~lv 113 (137)
T TIGR01925 105 RSGMGFTVM 113 (137)
T ss_pred CCcccHHHH
Confidence 468888776
No 77
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.58 E-value=6.9e-08 Score=90.27 Aligned_cols=99 Identities=26% Similarity=0.456 Sum_probs=68.7
Q ss_pred HHHHHHHHHHchhhhCCC--------------eeEEEEEcCCcc-eEEEEeCCCCCCcccHH------------------
Q psy5349 23 VSTAVKELIENAIDAKAT--------------SIQINLMNQGLD-LIEVKDDGSGIPTQDVP------------------ 69 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~--------------~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~------------------ 69 (213)
+..-+..||-||+|+|-. +|.++....|.. .|+|+|||.||+.+.+.
T Consensus 433 l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lS 512 (716)
T COG0643 433 LGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLS 512 (716)
T ss_pred hcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCC
Confidence 334466788999998842 488888777665 89999999999976542
Q ss_pred ------HHHhhcccCCcCCcccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCe
Q psy5349 70 ------LICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGT 143 (213)
Q Consensus 70 ------~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT 143 (213)
.+|.++++++..- .-...||+|+-.+ |+.-+ .-+|.+.. .+..++||
T Consensus 513 d~Ei~~LIF~PGFSTa~~V-------tdvSGRGVGMDVV----------k~~I~--------~LgG~I~V--~S~~G~GT 565 (716)
T COG0643 513 DEEILNLIFAPGFSTAEQV-------TDVSGRGVGMDVV----------KTNIE--------QLGGSISV--SSEPGKGT 565 (716)
T ss_pred HHHHHHHHhcCCCCcchhh-------hcccCCccCHHHH----------HHHHH--------HcCCEEEE--EecCCCCe
Confidence 3455555543221 1134689999888 66555 23677776 35668999
Q ss_pred EEEEe
Q psy5349 144 TVSVK 148 (213)
Q Consensus 144 ~V~v~ 148 (213)
+|+++
T Consensus 566 ~Fti~ 570 (716)
T COG0643 566 TFTIR 570 (716)
T ss_pred EEEEe
Confidence 99998
No 78
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=98.55 E-value=2e-07 Score=84.38 Aligned_cols=79 Identities=24% Similarity=0.419 Sum_probs=58.2
Q ss_pred HHHHHHHHHHchhhhC-CCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 23 VSTAVKELIENAIDAK-ATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~-a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
+.+++.|++.||++++ +..|.|++..++. -.++|.|||.|||+++ +..|+||+
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~~-------------------------~~~GLGL~ 465 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPGS-------------------------GQQGFGLR 465 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEcCCEEEEEEEECCCCCCcCC-------------------------CCCCCcHH
Confidence 6678999999999986 4678888865443 3899999999999652 12488888
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +...+ .++|++... + ++||+|++.
T Consensus 466 iv----------r~iv~--------~~GG~i~v~--S--~~Gt~f~I~ 491 (495)
T PRK11644 466 GM----------RERVT--------ALGGTLTIS--C--THGTRLSVS 491 (495)
T ss_pred HH----------HHHHH--------HcCCEEEEE--c--CCCEEEEEE
Confidence 77 44333 357777663 2 579999987
No 79
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.51 E-value=2.8e-07 Score=80.20 Aligned_cols=83 Identities=27% Similarity=0.335 Sum_probs=61.6
Q ss_pred cCHHHHHHHHHHchhhhC-CCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 21 TSVSTAVKELIENAIDAK-ATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~-a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
..+..+++|.|.|+++++ |++|.|++...+. ..++|.|||.|++.+... .|.|
T Consensus 278 ~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~-------------------------~~~G 332 (365)
T COG4585 278 DALFRIVQEALTNAIRHAQATEVRVTLERTDDELRLEVIDNGVGFDPDKEG-------------------------GGFG 332 (365)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEEEEEcCCEEEEEEEECCcCCCccccC-------------------------CCcc
Confidence 457899999999999965 8899999865433 499999999999976321 2667
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|.++ |...+ ..+|.+... +..++||+|+++
T Consensus 333 L~~m----------reRv~--------~lgG~l~i~--S~~g~Gt~i~i~ 362 (365)
T COG4585 333 LLGM----------RERVE--------ALGGTLTID--SAPGQGTTVTIT 362 (365)
T ss_pred hhhH----------HHHHH--------HcCCEEEEE--ecCCCceEEEEe
Confidence 7777 44433 246777663 344789999997
No 80
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=98.46 E-value=4.7e-07 Score=83.17 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=58.3
Q ss_pred HHHHHHHHHHchhhhC-CCeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 23 VSTAVKELIENAIDAK-ATSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~-a~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
+.+++.|+|.||+++. +..|.|.+..++ ...++|.|||+|||++.. ...|+||+
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~~------------------------~~~glGL~ 525 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGVPENAE------------------------RSNHYGLI 525 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCcccc------------------------CCCCccHH
Confidence 6789999999999986 567888886443 348999999999997630 02477887
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +.... ..+|.+... +..++||+|++.
T Consensus 526 i~----------~~~~~--------~lgG~l~i~--s~~~~Gt~v~i~ 553 (569)
T PRK10600 526 IM----------RDRAQ--------SLRGDCRVR--RRESGGTEVVVT 553 (569)
T ss_pred HH----------HHHHH--------HcCCEEEEE--ECCCCCEEEEEE
Confidence 76 33332 246776653 334579999998
No 81
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=98.46 E-value=2.5e-07 Score=83.74 Aligned_cols=104 Identities=25% Similarity=0.251 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHchhhhCCC---eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCch
Q psy5349 22 SVSTAVKELIENAIDAKAT---SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGE 97 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~---~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~ 97 (213)
-+.++..|||.||+.++.. .|.|..+..+. .++.|.|||.||++..++++|..|-.-... .-+...|+
T Consensus 636 ~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~--------~~y~gtG~ 707 (750)
T COG4251 636 QLGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSR--------DEYLGTGL 707 (750)
T ss_pred HHHHHHHHHHhhheecCCCCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCch--------hhhcCCCc
Confidence 3678999999999999854 48888764433 499999999999999999998876442211 12334899
Q ss_pred hhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHH
Q psy5349 98 ALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRK 158 (213)
Q Consensus 98 gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~ 158 (213)
||+.+ +...+ .+.|.+.. .+..+.|.|+.++ +|+.+
T Consensus 708 GL~I~----------kkI~e--------~H~G~i~v--Es~~gEgsTF~f~-----lp~~~ 743 (750)
T COG4251 708 GLAIC----------KKIAE--------RHQGRIWV--ESTPGEGSTFYFT-----LPVGG 743 (750)
T ss_pred cHHHH----------HHHHH--------HhCceEEE--eecCCCceeEEEE-----eecCC
Confidence 99887 44444 34555554 2444567888777 56653
No 82
>PRK13560 hypothetical protein; Provisional
Probab=98.45 E-value=3.2e-07 Score=86.61 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=57.7
Q ss_pred HHHHHHHHHHchhhhCC-----CeeEEEEEcC--CcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCC
Q psy5349 23 VSTAVKELIENAIDAKA-----TSIQINLMNQ--GLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFR 95 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a-----~~I~I~~~~~--~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~ 95 (213)
+.+++.||+.||++|.. ..|.|.+... +...|+|.|||+|||++.. .. .+.
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~~~-----------~~-----------~~~ 769 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAGFD-----------FR-----------AAE 769 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcccc-----------cc-----------ccC
Confidence 45689999999999852 3577777544 2348999999999998621 00 134
Q ss_pred chhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 96 GEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 96 G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+||+.+ +...+ .++|.+... + +.||+|+|.
T Consensus 770 gLGLai~----------~~iv~--------~~gG~I~v~--S--~~Gt~F~i~ 800 (807)
T PRK13560 770 TLGLQLV----------CALVK--------QLDGEIALD--S--RGGARFNIR 800 (807)
T ss_pred CccHHHH----------HHHHH--------HcCCEEEEE--c--CCceEEEEE
Confidence 7898877 44444 357887763 3 269999998
No 83
>PRK03660 anti-sigma F factor; Provisional
Probab=98.39 E-value=3.3e-06 Score=63.76 Aligned_cols=71 Identities=27% Similarity=0.266 Sum_probs=49.4
Q ss_pred ccCHHHHHHHHHHchhhhCC-----CeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCC
Q psy5349 20 ITSVSTAVKELIENAIDAKA-----TSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYG 93 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~DA~a-----~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G 93 (213)
+..+..++.|++.||+.++. ..|.|.+...+ ...++|.|+|.||++ ....+.+++.++... +
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~~----------~ 104 (146)
T PRK03660 37 LTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTKPEL----------E 104 (146)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccCCCC----------C
Confidence 35688999999999998752 35777765333 238999999999985 556666665443211 2
Q ss_pred CCchhhhhh
Q psy5349 94 FRGEALNAL 102 (213)
Q Consensus 94 ~~G~gl~s~ 102 (213)
..|+||+.+
T Consensus 105 ~~GlGL~i~ 113 (146)
T PRK03660 105 RSGMGFTVM 113 (146)
T ss_pred CccccHHHH
Confidence 358888877
No 84
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.36 E-value=6.3e-07 Score=69.33 Aligned_cols=84 Identities=21% Similarity=0.148 Sum_probs=56.4
Q ss_pred ccCHHHHHHHHHHchhhhCCC-----eeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCC
Q psy5349 20 ITSVSTAVKELIENAIDAKAT-----SIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYG 93 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G 93 (213)
...+..++.|++.||++++.. .|.|++...+ ...|.|.|+|.||+++.++..+.++...+... ...
T Consensus 40 ~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--------~~~ 111 (161)
T PRK04069 40 IEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--------DLR 111 (161)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCCccc--------ccC
Confidence 345788999999999998742 4777765333 34999999999999887766665554433211 011
Q ss_pred CCchhhhhhhccCe-eEEE
Q psy5349 94 FRGEALNALCQIGE-VSVT 111 (213)
Q Consensus 94 ~~G~gl~s~~~~s~-v~v~ 111 (213)
..|.||+.+-.+.+ +++.
T Consensus 112 ~~G~GL~li~~l~d~v~~~ 130 (161)
T PRK04069 112 EGGLGLFLIETLMDDVTVY 130 (161)
T ss_pred CCceeHHHHHHHHHhEEEE
Confidence 34788887755554 5554
No 85
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.27 E-value=2.5e-06 Score=65.91 Aligned_cols=86 Identities=21% Similarity=0.112 Sum_probs=57.6
Q ss_pred cccCHHHHHHHHHHchhhhCC-----CeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccC
Q psy5349 19 IITSVSTAVKELIENAIDAKA-----TSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSY 92 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~a-----~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~ 92 (213)
.+..+..++.|++.||+.++- ..|.|.+...+ ...|.|.|+|.|++++.++..+.++....... ..
T Consensus 39 ~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--------~~ 110 (159)
T TIGR01924 39 DIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--------DL 110 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCcc--------cC
Confidence 345688899999999999873 35777765433 34899999999999887776554433322111 11
Q ss_pred CCCchhhhhhhccCe-eEEEE
Q psy5349 93 GFRGEALNALCQIGE-VSVTT 112 (213)
Q Consensus 93 G~~G~gl~s~~~~s~-v~v~s 112 (213)
...|.||+.+-.+++ +.+.+
T Consensus 111 ~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 111 REGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred CCCccCHHHHHHhccEEEEEe
Confidence 235888888866665 55553
No 86
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=98.20 E-value=2.7e-06 Score=74.80 Aligned_cols=60 Identities=30% Similarity=0.372 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHchhhhCCC---eeEEEEEc-CC-cceEEEEeCCCCCCcccHHHHHhhcccCCcC
Q psy5349 22 SVSTAVKELIENAIDAKAT---SIQINLMN-QG-LDLIEVKDDGSGIPTQDVPLICQAATTSKIT 81 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~---~I~I~~~~-~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~ 81 (213)
++.+++.||+-||+||+.. -|.|.+.. ++ ..+|-|.|||.|-|.+-+++++.+|++||..
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v 628 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV 628 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCccccccc
Confidence 6889999999999999854 47777743 22 2399999999999999999999999999864
No 87
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=98.13 E-value=7.3e-06 Score=74.76 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=56.6
Q ss_pred HHHHHHHHHHchhhhCC-CeeEEEEEcC--CcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 23 VSTAVKELIENAIDAKA-TSIQINLMNQ--GLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a-~~I~I~~~~~--~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
+.+++.|++.||+++.. ..|.|.+... +...++|.|||+|||+++. ...|+||
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~~~glGL 527 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTNPDGEHTVSIRDDGIGIGELKE------------------------PEGHYGL 527 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCEEEEEEEECCcCcCCCCC------------------------CCCCcCH
Confidence 56899999999999764 4677777533 3348999999999996421 1236777
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+ +...+ .++|.+.. .+..++||+|++.
T Consensus 528 ~i~----------~~iv~--------~~~G~i~v--~s~~~~Gt~~~i~ 556 (565)
T PRK10935 528 NIM----------QERAE--------RLGGTLTI--SQPPGGGTTVSLT 556 (565)
T ss_pred HHH----------HHHHH--------HcCCEEEE--EECCCCcEEEEEE
Confidence 665 33322 24677665 2344679999998
No 88
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.01 E-value=1.9e-05 Score=57.91 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=53.1
Q ss_pred cCHHHHHHHHHHchhhhCCC-----eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCC
Q psy5349 21 TSVSTAVKELIENAIDAKAT-----SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGF 94 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 94 (213)
..+..|+.|++.||+.++.. .|.|.+..... ..|+|.|+|.|+++...+....... .....
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~~~-------------~~~~~ 96 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPWEP-------------DSLRE 96 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccccC-------------CCCCC
Confidence 45788999999999998853 57777654433 3899999999999875433211000 11235
Q ss_pred CchhhhhhhccCe-eEE
Q psy5349 95 RGEALNALCQIGE-VSV 110 (213)
Q Consensus 95 ~G~gl~s~~~~s~-v~v 110 (213)
.|.||..+..+++ +.+
T Consensus 97 ~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 97 GGRGLFLIRSLMDEVDY 113 (125)
T ss_pred CCcCHHHHHHHHcEEEE
Confidence 6888888877766 666
No 89
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.00 E-value=1.4e-05 Score=71.49 Aligned_cols=45 Identities=29% Similarity=0.496 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHchhhh-CCCeeEEEEEcC-CcceEEEEeCCCCCCcc
Q psy5349 22 SVSTAVKELIENAIDA-KATSIQINLMNQ-GLDLIEVKDDGSGIPTQ 66 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA-~a~~I~I~~~~~-~~~~i~V~DnG~GI~~~ 66 (213)
-+.++|+|-+.||+++ .|++|.|++... |...++|.|||+|||..
T Consensus 481 HlLqIvREAlsNa~KHa~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 481 HLLQIVREALSNAIKHAQASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHHHHHhcccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 3678999999999985 499999999755 55599999999999975
No 90
>PRK13559 hypothetical protein; Provisional
Probab=97.97 E-value=1.4e-05 Score=68.84 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHchhhhCC-----CeeEEEE--EcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCC
Q psy5349 22 SVSTAVKELIENAIDAKA-----TSIQINL--MNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYG 93 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-----~~I~I~~--~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G 93 (213)
.+.+++.||+.||++|++ ..|.|.+ ...+ ...+.|.|||.|++++. .
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~-------------------------~ 321 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKL-------------------------A 321 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCC-------------------------C
Confidence 367899999999999953 3688877 3323 34899999999987641 0
Q ss_pred CCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 94 FRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 94 ~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
..|.|+..+ +...+. .++|.+.... . +.||++++.
T Consensus 322 ~~g~Gl~i~----------~~~v~~-------~~gG~i~~~~--~-~~G~~~~l~ 356 (361)
T PRK13559 322 KRGFGTVII----------GAMVES-------QLNGQLEKTW--S-DDGLLARIE 356 (361)
T ss_pred CCCcHHHHH----------HHHHHH-------HcCCeEEEEE--c-CCeEEEEEE
Confidence 247787766 332221 1467776632 2 469999998
No 91
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=97.90 E-value=2.9e-05 Score=69.72 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=40.5
Q ss_pred cCHHHHHHHHHHchhhhCCC------eeEEEEEcC-CcceEEEEeCCCCCCcccHHHHH
Q psy5349 21 TSVSTAVKELIENAIDAKAT------SIQINLMNQ-GLDLIEVKDDGSGIPTQDVPLIC 72 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~------~I~I~~~~~-~~~~i~V~DnG~GI~~~~l~~~~ 72 (213)
..|.-++.-|||||+.||-. .|.|..... +.-.++|.|||+||+.+....+.
T Consensus 349 ~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 349 IDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred cCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHH
Confidence 46889999999999999943 477776544 33489999999999988665544
No 92
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=97.87 E-value=3.4e-05 Score=66.18 Aligned_cols=46 Identities=33% Similarity=0.569 Sum_probs=39.9
Q ss_pred cCHHHHHHHHHHchhh-hCCCeeEEEEEcCCc-ceEEEEeCCCCCCcc
Q psy5349 21 TSVSTAVKELIENAID-AKATSIQINLMNQGL-DLIEVKDDGSGIPTQ 66 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~D-A~a~~I~I~~~~~~~-~~i~V~DnG~GI~~~ 66 (213)
-++..++.|++.|-++ |.|+.|+|.+..++. -.++|.|||.|+|+.
T Consensus 409 vTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 409 VTLYRLCQELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred EeHHHHHHHHHHHHHhccccceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 3689999999999998 568999999987766 389999999999975
No 93
>KOG0355|consensus
Probab=97.83 E-value=7.1e-05 Score=69.85 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=79.8
Q ss_pred CcccCHHHHHHHHHHchhh----hCCCeeEEEEEcCCcceEEEEeCCCCCCcccHH--------HHHh-hcccCCcCCcc
Q psy5349 18 QIITSVSTAVKELIENAID----AKATSIQINLMNQGLDLIEVKDDGSGIPTQDVP--------LICQ-AATTSKITDIT 84 (213)
Q Consensus 18 ~~i~~~~~~v~eLi~NA~D----A~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~--------~~~~-~~~~sk~~~~~ 84 (213)
.+...+.++..|++.||.| +....|.+.++.+. ..|.|.+||.|||.+..+ .+|. .++.|+++..+
T Consensus 49 t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~-~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny~d~e 127 (842)
T KOG0355|consen 49 TYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK-NEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDDE 127 (842)
T ss_pred ecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCC-CEEEEEeCCCcceeeecccccccchHHHHhhhhhccccCCCc
Confidence 5677899999999999998 22346888886543 399999999999977653 3444 45556665422
Q ss_pred cccccccCCCCchh--hhhhhccCe-eEEEEeeCCCCceEEEEEc--cCCeEEEeccCCCCCCeEEEEeccccCchHHHH
Q psy5349 85 DLDSLSSYGFRGEA--LNALCQIGE-VSVTTKTNSDPVASMYKFS--HTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQ 159 (213)
Q Consensus 85 ~~~~~~~~G~~G~g--l~s~~~~s~-v~v~s~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~~ 159 (213)
.-.+.|..|.| |+.+++..- +++..+.......+.|.-. ........ ....+.+|.|++. |+-.+
T Consensus 128 ---kK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~-~~~~~~yTkitF~------PDl~~ 197 (842)
T KOG0355|consen 128 ---KKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIV-PSTDEDYTKITFS------PDLEK 197 (842)
T ss_pred ---cccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceee-cCCCCCcceEEeC------cChHh
Confidence 22344555555 445544443 5554444443332333221 01111111 2233449999997 77777
Q ss_pred Hhh
Q psy5349 160 YLS 162 (213)
Q Consensus 160 ~~~ 162 (213)
|..
T Consensus 198 F~m 200 (842)
T KOG0355|consen 198 FKM 200 (842)
T ss_pred cCc
Confidence 654
No 94
>KOG0787|consensus
Probab=97.69 E-value=7.9e-05 Score=64.02 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=57.6
Q ss_pred ccc-CHHHHHHHHHHchhhhCC----------CeeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCcccc
Q psy5349 19 IIT-SVSTAVKELIENAIDAKA----------TSIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDL 86 (213)
Q Consensus 19 ~i~-~~~~~v~eLi~NA~DA~a----------~~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~ 86 (213)
++. -+..++.||+.||++|.- .-|.|.+-.+..+ .|.|+|-|=||+.++++.+|.-.+++......|.
T Consensus 256 yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~ 335 (414)
T KOG0787|consen 256 YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDN 335 (414)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCC
Confidence 344 488999999999999852 1377777543333 8999999999999999999987766554443333
Q ss_pred cccccCCCCchhhhhh
Q psy5349 87 DSLSSYGFRGEALNAL 102 (213)
Q Consensus 87 ~~~~~~G~~G~gl~s~ 102 (213)
.....+...|.||...
T Consensus 336 ~~~~plaGfG~GLPis 351 (414)
T KOG0787|consen 336 NRTAPLAGFGFGLPIS 351 (414)
T ss_pred CCcCcccccccCCcHH
Confidence 3222333346665433
No 95
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.49 E-value=0.00021 Score=60.72 Aligned_cols=85 Identities=26% Similarity=0.350 Sum_probs=58.0
Q ss_pred cCHHHHHHHHHHchhh-hCCCeeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 21 TSVSTAVKELIENAID-AKATSIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~D-A~a~~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
+.++.++.|-+.|-=+ |+|++|+|.+...+.. ++.|+|||.|++...... -.+|+|
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~----------------------~~~GiG 415 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQ----------------------KRHGIG 415 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchhhcc----------------------Cccccc
Confidence 3466777777777554 6799999999765544 899999999999764311 135899
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|..+ +.... ..+|....+ ..++||.+++.
T Consensus 416 LRNM----------rERma--------~~GG~~~v~---s~p~GTel~v~ 444 (459)
T COG4564 416 LRNM----------RERMA--------HFGGELEVE---SSPQGTELTVL 444 (459)
T ss_pred cccH----------HHHHH--------HhCceEEEE---ecCCCcEEEEE
Confidence 8766 33332 235666552 23469999987
No 96
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=97.43 E-value=0.00015 Score=64.30 Aligned_cols=44 Identities=30% Similarity=0.378 Sum_probs=35.2
Q ss_pred HHHHHHHHHHchhhhCCC------eeEEEEEcCCc-ceEEEEeCCCCCCcc
Q psy5349 23 VSTAVKELIENAIDAKAT------SIQINLMNQGL-DLIEVKDDGSGIPTQ 66 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~------~I~I~~~~~~~-~~i~V~DnG~GI~~~ 66 (213)
|.=.+.-||+||+++|-. .|+|.+..++. -.+.|+|||.|++++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 455788999999999843 47887765443 399999999999987
No 97
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.39 E-value=0.0015 Score=49.75 Aligned_cols=84 Identities=23% Similarity=0.194 Sum_probs=52.8
Q ss_pred cccCHHHHHHHHHHchhhhCCC------eeEEEEEc-CCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCccccccccc
Q psy5349 19 IITSVSTAVKELIENAIDAKAT------SIQINLMN-QGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSS 91 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~a~------~I~I~~~~-~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 91 (213)
.+..+..|+.|++.|++.++-+ .|.|.+.. ++...+.|.|.|.||. ++...+.+.+......
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~~--------- 105 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPGDTTAEGL--------- 105 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCCCCCCccc---------
Confidence 3457889999999999997633 46666543 3334999999996665 5555555543222111
Q ss_pred CCCCchhhhhhhccCe-eEEEEee
Q psy5349 92 YGFRGEALNALCQIGE-VSVTTKT 114 (213)
Q Consensus 92 ~G~~G~gl~s~~~~s~-v~v~s~~ 114 (213)
-..|.||+.+-.+.+ +++....
T Consensus 106 -~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 106 -QEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred -ccccccHHHHhhhheeEEEEecc
Confidence 124777777755544 6665433
No 98
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.07 E-value=0.0014 Score=53.34 Aligned_cols=45 Identities=33% Similarity=0.505 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHchhhhCCC-----eeEEEEEc--CC-cceEEEEeCCCCCCcc
Q psy5349 22 SVSTAVKELIENAIDAKAT-----SIQINLMN--QG-LDLIEVKDDGSGIPTQ 66 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~-----~I~I~~~~--~~-~~~i~V~DnG~GI~~~ 66 (213)
.+.-++.||+.||++|++. .|.|.+.. ++ ...+.|.|||.|+|.+
T Consensus 122 ~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 122 PLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 4677899999999999864 46666643 33 2589999999999975
No 99
>PF14501 HATPase_c_5: GHKL domain
Probab=95.31 E-value=0.025 Score=39.81 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHchhhhCCC-----eeEEEEEcCC-cceEEEEeCCCC
Q psy5349 22 SVSTAVKELIENAIDAKAT-----SIQINLMNQG-LDLIEVKDDGSG 62 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~-~~~i~V~DnG~G 62 (213)
++..++.+|++||++|+.. .|.|.+...+ ...|.|...-..
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCC
Confidence 5778999999999998632 5777775433 337888877433
No 100
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.41 E-value=4.3 Score=30.85 Aligned_cols=49 Identities=29% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHHHHHHHchhhhCCC-eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHH
Q psy5349 23 VSTAVKELIENAIDAKAT-SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLI 71 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~-~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~ 71 (213)
.-=...|||+||+++.++ .|.|+..-... ..+.|.+.-.+=+..+++.+
T Consensus 64 vgYl~NELiENAVKfra~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~l 114 (184)
T COG5381 64 VGYLANELIENAVKFRATGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENL 114 (184)
T ss_pred HHHHHHHHHHhhhcccCCCcEEEEEEeccceEEEEecccCCCccHHHHHHH
Confidence 334678999999999876 57777653332 36777776666666665544
No 101
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=77.89 E-value=3.4 Score=37.41 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHHchh---hhC--CCeeEEEEEcCCcceEEEEeCCC
Q psy5349 20 ITSVSTAVKELIENAI---DAK--ATSIQINLMNQGLDLIEVKDDGS 61 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~---DA~--a~~I~I~~~~~~~~~i~V~DnG~ 61 (213)
-.-|..|++|+|-||+ ||. ...|.|.+.+| +|.|...|-
T Consensus 268 ~dyP~~alREai~NAv~HRDYs~~~~~v~I~iydD---RieI~NPGg 311 (467)
T COG2865 268 WDYPLEALREAIINAVIHRDYSIRGRNVHIEIYDD---RIEITNPGG 311 (467)
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCceEEEEECC---eEEEECCCC
Confidence 3568899999999999 444 23799999876 899999884
No 102
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=67.01 E-value=5.1 Score=21.75 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=10.2
Q ss_pred CCcceEEEEeCCC
Q psy5349 49 QGLDLIEVKDDGS 61 (213)
Q Consensus 49 ~~~~~i~V~DnG~ 61 (213)
++...|+|.|+|+
T Consensus 11 Dgn~qITIeD~GP 23 (30)
T PF07492_consen 11 DGNFQITIEDTGP 23 (30)
T ss_pred CCCcEEEEecCCC
Confidence 4455999999995
No 103
>KOG1845|consensus
Probab=49.07 E-value=17 Score=35.06 Aligned_cols=84 Identities=21% Similarity=0.348 Sum_probs=46.8
Q ss_pred HHHHHHHHHchhhhCC---CeeEEE---EEcCC-cceEE-----EEeCCCCCCcccHHHHHhhcccCCcCCccccccccc
Q psy5349 24 STAVKELIENAIDAKA---TSIQIN---LMNQG-LDLIE-----VKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSS 91 (213)
Q Consensus 24 ~~~v~eLi~NA~DA~a---~~I~I~---~~~~~-~~~i~-----V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 91 (213)
.-++.||++||+|-.. +-+.|. ...+. ..-.. +.|||-||.++-+..-....+.+|.. . ..+
T Consensus 148 ~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e-~-----~~t 221 (775)
T KOG1845|consen 148 KGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKE-A-----NST 221 (775)
T ss_pred cChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhh-h-----hhh
Confidence 4578999999999653 322221 11122 11223 45889999988776544444444432 1 124
Q ss_pred CCCCchhhh-hhhccCe-eEEEEe
Q psy5349 92 YGFRGEALN-ALCQIGE-VSVTTK 113 (213)
Q Consensus 92 ~G~~G~gl~-s~~~~s~-v~v~s~ 113 (213)
.|..|.|+. +...++. +.+-+|
T Consensus 222 v~q~~~gfktst~rlGa~~i~~~R 245 (775)
T KOG1845|consen 222 VGQYGNGFKTSTMRLGADAIVFSR 245 (775)
T ss_pred hhhhccccccchhhhccceeEeeh
Confidence 456666654 5556665 555555
No 104
>PF07205 DUF1413: Domain of unknown function (DUF1413); InterPro: IPR010813 This family consists of several hypothetical bacterial proteins, which seem to be specific to Staphylococcus species. Members of this family are typically around 100 residues in length. The function of this family is unknown.
Probab=44.30 E-value=69 Score=20.73 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEE
Q psy5349 139 FPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTH 194 (213)
Q Consensus 139 ~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~ 194 (213)
-..||.+++.+||.. ..+..-.. .+...+-..+..+...+|.+.|.+..
T Consensus 11 l~~gt~F~l~dLf~~----~~w~~~s~---~~r~~~g~~F~~~V~~~~~~~i~~~~ 59 (70)
T PF07205_consen 11 LPPGTVFTLKDLFGK----EEWNTLSR---AERQSLGRAFLYEVKQGPIVRIKIIG 59 (70)
T ss_pred CCCCCEEeehHhcCh----HhhhhCCH---HHHHHHHHHHHHHHHhCCCCceEEEe
Confidence 368999999999964 11211111 22234446777888888888888764
No 105
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=41.76 E-value=21 Score=26.81 Aligned_cols=43 Identities=30% Similarity=0.355 Sum_probs=29.8
Q ss_pred HHHHHHchhhhCCC----eeEEEEEcCCcceEEEEeCCCCCCcccHH
Q psy5349 27 VKELIENAIDAKAT----SIQINLMNQGLDLIEVKDDGSGIPTQDVP 69 (213)
Q Consensus 27 v~eLi~NA~DA~a~----~I~I~~~~~~~~~i~V~DnG~GI~~~~l~ 69 (213)
-+|++...|-|-+. --.|++.+++...+-+.|||.||....++
T Consensus 22 ~keti~tT~~ampnt~paPa~itv~~~~~e~~afsddg~giq~~~lm 68 (142)
T PF12890_consen 22 AKETIETTWCAMPNTFPAPAGITVEDDGEEAFAFSDDGYGIQIQLLM 68 (142)
T ss_pred hhhhhhceeeecCccCCCCcceeeeecCcceEEEecCCceeeeHHHH
Confidence 35667776665432 14555655666689999999999987765
No 106
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.12 E-value=27 Score=19.31 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhccCCCeE
Q psy5349 170 ELRKVERVVKCLSLIHCKLR 189 (213)
Q Consensus 170 ~~~~~~~~l~~~~~~~p~i~ 189 (213)
++++.+.+.+.|...||++.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k 21 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVK 21 (32)
T ss_pred hHHHHHHHHHHHHHhCCCch
Confidence 56777889999999999864
No 107
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=31.16 E-value=58 Score=22.18 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=18.6
Q ss_pred hhCCCeeEEEEEcCCcceEEEEeCCC
Q psy5349 36 DAKATSIQINLMNQGLDLIEVKDDGS 61 (213)
Q Consensus 36 DA~a~~I~I~~~~~~~~~i~V~DnG~ 61 (213)
|..-..|.+-+...+ ..+.++|+|.
T Consensus 5 d~~gD~i~~yv~~~~-~~~~ltDdG~ 29 (90)
T PF08861_consen 5 DRDGDNIQIYVKKDD-DSIRLTDDGY 29 (90)
T ss_pred CCCCCEEEEEEEECC-CeEEEecCHH
Confidence 344567888887665 6899999994
No 108
>KOG3938|consensus
Probab=28.89 E-value=57 Score=27.45 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=16.0
Q ss_pred CeeEEEEEcCCcceEEEEeCCCCCC
Q psy5349 40 TSIQINLMNQGLDLIEVKDDGSGIP 64 (213)
Q Consensus 40 ~~I~I~~~~~~~~~i~V~DnG~GI~ 64 (213)
+.|.|.-.++. .-++|.|||-|-.
T Consensus 128 kEv~v~Kseda-lGlTITDNG~GyA 151 (334)
T KOG3938|consen 128 KEVEVVKSEDA-LGLTITDNGAGYA 151 (334)
T ss_pred eeEEEEecccc-cceEEeeCCccee
Confidence 34555444333 3799999999965
No 109
>KOG1845|consensus
Probab=28.63 E-value=28 Score=33.60 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=16.8
Q ss_pred EEEEeCCCCCCcccHHHHHh
Q psy5349 54 IEVKDDGSGIPTQDVPLICQ 73 (213)
Q Consensus 54 i~V~DnG~GI~~~~l~~~~~ 73 (213)
++..|||.||+++++..+-.
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~ 21 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN 21 (775)
T ss_pred cccccCCCCcCchhhhhhhh
Confidence 46789999999999987655
No 110
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=24.49 E-value=64 Score=21.42 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=15.8
Q ss_pred eEEEEeCCCCCCccc-HHHHHhhcc
Q psy5349 53 LIEVKDDGSGIPTQD-VPLICQAAT 76 (213)
Q Consensus 53 ~i~V~DnG~GI~~~~-l~~~~~~~~ 76 (213)
+..|.+||.||.+.+ .-.+|.+|.
T Consensus 46 saiItndG~GInP~QTag~vflKhG 70 (76)
T PF03671_consen 46 SAIITNDGVGINPQQTAGNVFLKHG 70 (76)
T ss_dssp EEEEESSS-EE-TTSBHHHHHHHT-
T ss_pred EEEEecCCcccccchhhhhhHhhcC
Confidence 678999999999875 345666553
No 111
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=24.24 E-value=1.3e+02 Score=20.31 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=12.7
Q ss_pred hhCCCeeEEEEEc-CCc-ceEEEEeCCCC
Q psy5349 36 DAKATSIQINLMN-QGL-DLIEVKDDGSG 62 (213)
Q Consensus 36 DA~a~~I~I~~~~-~~~-~~i~V~DnG~G 62 (213)
|++...+.|.+.. ++. ..++|.|++.|
T Consensus 28 d~G~~~~~v~i~~p~g~~~~~~v~d~~dG 56 (93)
T smart00557 28 GAGGGELEVEVTGPSGKKVPVEVKDNGDG 56 (93)
T ss_pred CCCCCcEEEEEECCCCCeeEeEEEeCCCC
Confidence 4444555555532 221 24555665544
No 112
>PRK14646 hypothetical protein; Provisional
Probab=23.05 E-value=3.4e+02 Score=20.61 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=34.4
Q ss_pred HHHHHHHHHHchhhh-CCCeeEEEEEcCCc-ceEEEE-eC--CCCCCcccHHHHHh
Q psy5349 23 VSTAVKELIENAIDA-KATSIQINLMNQGL-DLIEVK-DD--GSGIPTQDVPLICQ 73 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA-~a~~I~I~~~~~~~-~~i~V~-Dn--G~GI~~~~l~~~~~ 73 (213)
+..-|.++++..+.. |-.-+.|.+...+. ..++|. |. |-||+.++...+-.
T Consensus 5 ~~~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr 60 (155)
T PRK14646 5 NKSKLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNT 60 (155)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHH
Confidence 456788888888865 66778888765433 344444 43 67899988876543
Done!