Query psy5349
Match_columns 213
No_of_seqs 159 out of 2638
Neff 8.4
Searched_HMMs 29240
Date Sat Aug 17 00:19:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4l_A DNA mismatch repair pro 100.0 4.5E-46 1.5E-50 320.4 15.8 208 1-212 3-217 (367)
2 3na3_A DNA mismatch repair pro 100.0 8.4E-46 2.9E-50 316.3 16.3 206 3-212 9-217 (348)
3 1b63_A MUTL; DNA mismatch repa 100.0 1.8E-42 6.3E-47 295.9 20.6 201 1-205 3-204 (333)
4 1h7s_A PMS1 protein homolog 2; 100.0 2.5E-42 8.6E-47 297.8 18.5 208 2-212 14-227 (365)
5 3fv5_A DNA topoisomerase 4 sub 100.0 2.6E-29 9E-34 200.0 14.1 163 16-196 9-192 (201)
6 1s16_A Topoisomerase IV subuni 99.9 4.3E-27 1.5E-31 204.1 16.2 186 2-205 9-218 (390)
7 1ei1_A DNA gyrase B, GYRB; ATP 99.9 3.8E-27 1.3E-31 204.4 14.9 186 2-205 8-220 (391)
8 4duh_A DNA gyrase subunit B; s 99.9 5.8E-27 2E-31 188.5 10.4 166 21-203 34-219 (220)
9 4emv_A DNA topoisomerase IV, B 99.9 3.8E-25 1.3E-29 178.4 12.9 166 21-203 39-225 (226)
10 3cwv_A DNA gyrase, B subunit, 99.9 6.4E-25 2.2E-29 189.2 14.3 163 21-205 29-208 (369)
11 3t0h_A Heat shock protein HSP 99.9 1.5E-25 5.3E-30 181.1 7.3 158 19-190 29-212 (228)
12 2ior_A Chaperone protein HTPG; 99.9 3.6E-25 1.2E-29 180.3 8.9 166 3-186 33-227 (235)
13 3o0i_A HSP90AA1 protein; HSP90 99.9 4.1E-25 1.4E-29 180.7 7.6 158 19-190 57-240 (256)
14 1kij_A DNA gyrase subunit B; t 99.9 4.4E-24 1.5E-28 185.5 12.2 186 2-205 7-219 (390)
15 3lnu_A Topoisomerase IV subuni 99.9 1.1E-23 3.7E-28 182.7 14.3 185 3-205 29-237 (408)
16 1zxm_A TOPO IIA ATPase, DNA to 99.9 9.1E-24 3.1E-28 183.4 13.5 164 20-195 50-232 (400)
17 1y4s_A Chaperone protein HTPG; 99.9 1.6E-23 5.3E-28 188.4 11.0 174 18-205 23-239 (559)
18 2ioq_A Chaperone protein HTPG; 99.9 1.8E-23 6E-28 190.1 7.8 173 19-205 24-239 (624)
19 1yc1_A HSP 86, heat shock prot 99.9 8.5E-23 2.9E-27 168.5 9.4 156 18-186 64-243 (264)
20 2wer_A ATP-dependent molecular 99.9 1.4E-22 4.8E-27 163.5 10.1 154 19-185 23-201 (220)
21 3ttz_A DNA gyrase subunit B; p 99.9 1.6E-22 5.5E-27 160.3 8.5 154 21-205 30-197 (198)
22 2gqp_A Endoplasmin; GRP94, HSP 99.9 5E-22 1.7E-26 161.7 10.6 169 3-192 18-217 (236)
23 1qy5_A Endoplasmin; GRP94, NEC 99.8 2.9E-21 9.8E-26 159.6 7.3 167 4-191 15-214 (269)
24 2o1u_A Endoplasmin; GRP94, HSP 99.8 1.8E-21 6.2E-26 177.6 6.1 173 17-205 40-260 (666)
25 3peh_A Endoplasmin homolog; st 99.8 2.7E-20 9.2E-25 153.7 12.0 154 19-186 43-223 (281)
26 1mu5_A Type II DNA topoisomera 99.8 2.5E-19 8.5E-24 158.9 16.4 166 21-206 31-220 (471)
27 3nmq_A Heat shock protein HSP 99.8 4.6E-20 1.6E-24 149.4 10.0 160 12-186 30-214 (239)
28 2zbk_B Type 2 DNA topoisomeras 99.8 1.8E-19 6.3E-24 161.6 14.0 167 21-207 30-220 (530)
29 1pvg_A DNA topoisomerase II; G 99.8 1.7E-19 5.9E-24 157.3 11.7 161 21-195 63-245 (418)
30 2q2e_B Type 2 DNA topoisomeras 99.8 1.3E-19 4.4E-24 164.9 10.9 166 21-205 36-223 (621)
31 2cg9_A ATP-dependent molecular 99.8 3.3E-18 1.1E-22 156.3 13.1 166 11-192 16-207 (677)
32 3ied_A Heat shock protein; HSP 99.8 2.5E-18 8.7E-23 139.5 10.1 153 17-184 42-262 (272)
33 4gfh_A DNA topoisomerase 2; to 99.5 1.9E-13 6.5E-18 131.9 12.2 152 21-187 58-229 (1177)
34 1id0_A PHOQ histidine kinase; 99.4 5E-13 1.7E-17 99.9 7.3 97 22-148 44-141 (152)
35 2c2a_A Sensor histidine kinase 99.4 3.9E-13 1.3E-17 109.3 5.2 101 22-148 138-244 (258)
36 1ysr_A Sensor-type histidine k 99.3 1.8E-12 6.2E-17 96.8 6.8 98 22-148 46-145 (150)
37 1bxd_A ENVZ(290-450), protein 99.3 7.9E-13 2.7E-17 100.1 3.6 99 22-148 47-146 (161)
38 3jz3_A Sensor protein QSEC; he 99.3 1.8E-12 6E-17 102.4 5.6 94 23-148 118-213 (222)
39 2q8g_A [pyruvate dehydrogenase 99.3 1.3E-12 4.6E-17 113.7 5.3 107 22-148 243-359 (407)
40 2e0a_A Pyruvate dehydrogenase 99.3 1.6E-12 5.4E-17 112.8 5.7 107 22-148 230-346 (394)
41 1y8o_A [pyruvate dehydrogenase 99.3 1.1E-12 3.9E-17 114.6 3.9 107 22-148 253-370 (419)
42 1gkz_A [3-methyl-2-oxobutanoat 99.3 1.9E-12 6.4E-17 112.0 3.7 108 21-148 237-369 (388)
43 2btz_A Pyruvate dehydrogenase 99.2 2.9E-12 1E-16 111.1 3.9 106 22-148 231-346 (394)
44 4ew8_A Sensor protein DIVL; si 99.2 1E-11 3.4E-16 101.1 6.6 95 22-148 155-252 (268)
45 1i58_A Chemotaxis protein CHEA 99.2 2.6E-12 9E-17 99.8 2.8 99 23-148 48-185 (189)
46 3d36_A Sporulation kinase B; G 99.2 7.8E-12 2.7E-16 100.1 5.3 96 22-148 123-221 (244)
47 3sl2_A Sensor histidine kinase 99.2 2.2E-11 7.4E-16 93.6 5.6 101 22-148 43-148 (177)
48 1b3q_A Protein (chemotaxis pro 99.2 1E-11 3.4E-16 107.4 3.9 73 23-102 107-218 (379)
49 3a0y_A Sensor protein; ATP-LID 99.2 1.8E-11 6E-16 91.2 4.7 95 22-148 47-144 (152)
50 1r62_A Nitrogen regulation pro 99.1 1.3E-11 4.4E-16 92.6 2.3 69 22-102 48-130 (160)
51 3ehg_A Sensor kinase (YOCF pro 99.1 8.7E-11 3E-15 85.7 6.3 81 22-148 40-122 (128)
52 3a0r_A Sensor protein; four he 99.1 1.8E-11 6.3E-16 102.9 2.6 95 22-148 244-341 (349)
53 1th8_A Anti-sigma F factor; SP 99.1 2.8E-10 9.5E-15 84.7 8.3 73 21-105 38-116 (145)
54 4fpp_A Phosphotransferase; fou 99.0 1E-10 3.5E-15 95.1 3.7 94 22-148 146-244 (247)
55 3ehh_A Sensor kinase (YOCF pro 99.0 3.5E-10 1.2E-14 89.2 6.2 80 23-148 131-212 (218)
56 3zxo_A Redox sensor histidine 99.0 6.8E-10 2.3E-14 80.6 6.5 80 22-148 43-124 (129)
57 3zxq_A Hypoxia sensor histidin 98.9 6.5E-10 2.2E-14 80.2 4.8 79 22-148 39-119 (124)
58 3ke6_A Protein RV1364C/MT1410; 97.7 5.3E-05 1.8E-09 65.6 7.1 69 20-111 295-371 (399)
59 1ixm_A SPO0B, protein (sporula 97.0 0.00062 2.1E-08 53.1 4.1 51 25-75 108-169 (192)
60 3lmm_A Uncharacterized protein 60.7 7.7 0.00026 34.9 4.2 43 23-68 297-348 (583)
61 2w0p_A Filamin-A; alternative 36.6 47 0.0016 21.6 4.2 28 35-62 29-56 (94)
62 3rgh_A Filamin-A; cell adhesio 34.8 45 0.0015 22.1 3.8 28 35-62 34-63 (100)
63 4h62_V Mediator of RNA polymer 32.6 19 0.00065 18.2 1.1 13 24-36 11-23 (31)
64 2bp3_A Filamin A; structural p 30.0 53 0.0018 21.5 3.5 27 36-62 33-59 (97)
65 2dia_A Filamin-B; beta-sandwic 27.4 59 0.002 22.0 3.5 27 36-62 38-66 (113)
66 2ee6_A Filamin-B; beta-sandwic 26.8 48 0.0016 22.1 2.9 27 36-62 38-64 (105)
67 3h87_C Putative uncharacterize 26.3 35 0.0012 21.7 1.9 35 3-37 6-42 (73)
68 2eec_A Filamin-B; beta-sandwic 25.8 53 0.0018 22.9 3.0 29 34-62 46-74 (125)
69 1v05_A Filamin C; actin-bindin 25.2 74 0.0025 20.6 3.6 27 36-62 33-61 (96)
70 1j0g_A Hypothetical protein 18 24.9 32 0.0011 22.4 1.5 24 53-76 54-78 (92)
71 2bsq_E FITA, trafficking prote 24.2 34 0.0012 22.0 1.6 35 2-36 4-40 (77)
72 2k9u_A Gamma filamin; cytoskel 23.5 62 0.0021 22.1 3.0 7 54-60 63-69 (119)
73 3cnk_A Filamin-A; FLNA24, X-RA 23.1 67 0.0023 20.5 3.0 28 35-62 25-54 (89)
74 2ab9_A Pro-SFTI-1; protein, be 23.0 6.2 0.00021 20.0 -1.7 9 53-61 8-16 (31)
75 2dmb_A Filamin-B; beta-sandwic 21.9 66 0.0023 22.3 2.9 27 36-62 39-67 (124)
76 2di9_A Filamin-B; beta-sandwic 21.2 89 0.003 21.8 3.5 7 54-60 76-82 (131)
77 2d7m_A Filamin-C; beta-sandwic 20.6 91 0.0031 21.0 3.4 10 53-62 59-68 (115)
No 1
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-46 Score=320.42 Aligned_cols=208 Identities=34% Similarity=0.548 Sum_probs=171.5
Q ss_pred Cc-cccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCC
Q psy5349 1 MS-INILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSK 79 (213)
Q Consensus 1 m~-i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk 79 (213)
|+ |++||++++++|+||++|.+|.++|+|||+||+||+|+.|.|.+.+++...|+|.|||+||++++++.+|.+|+|||
T Consensus 3 M~~I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp ----------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CCcceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCc
Confidence 66 99999999999999999999999999999999999999999999766666999999999999999999999999999
Q ss_pred cCCcccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHHH
Q psy5349 80 ITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQ 159 (213)
Q Consensus 80 ~~~~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~~ 159 (213)
....+|+....++|++|+||+|++++|+|+|+|++.+ ..++.+.++.+|.+....+...++||+|+|++||+|+|+|++
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si~avS~l~V~sr~~~-~~~~~~~~~~~G~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k 161 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSP-PKADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQK 161 (367)
T ss_dssp -------CCCCEEEETTHHHHHHHHSSEEEEEEESST-TCEEEEEECTTCCEEEEEEECCSSEEEEEEESTTTTCHHHHH
T ss_pred CCchhhhhhhhccCccchHHHHhhccCEEEEEEEECC-CCEEEEEEcCCCcEEeeccccCCCCeEEEEchhhccCchhhh
Confidence 9888888888899999999999999999999999988 678999997678876655566789999999999999999999
Q ss_pred -HhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEEC-----CEEEEEeCCCCcccccc
Q psy5349 160 -YLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHN-----KCVIWQKNPVWTVRYLF 212 (213)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~-----~~~~~~~~~~~~~~~~~ 212 (213)
++++. ..++..+.+++++||++||+|+|+|.++ +..+|++++..++++++
T Consensus 162 ~flk~~---~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i 217 (367)
T 3h4l_A 162 EFSKTF---KRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNI 217 (367)
T ss_dssp HHHTTH---HHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHH
T ss_pred hhccch---HHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHH
Confidence 66654 4789999999999999999999999873 36788888888877653
No 2
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=8.4e-46 Score=316.30 Aligned_cols=206 Identities=33% Similarity=0.541 Sum_probs=178.0
Q ss_pred cccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCC
Q psy5349 3 INILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITD 82 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~ 82 (213)
|++||++++++|+||++|.+|.++|+|||+||+||+++.|.|.+..++...|+|.|||+||++++++.+|++|+++|...
T Consensus 9 I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~ 88 (348)
T 3na3_A 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQS 88 (348)
T ss_dssp CCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCC
T ss_pred cccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhccccccccCc
Confidence 99999999999999999999999999999999999999999999876655799999999999999999999999999988
Q ss_pred cccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEE-eccCCCCCCeEEEEeccccCchHHHHHh
Q psy5349 83 ITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTS-TQPSHFPNGTTVSVKNLFHNLPVRKQYL 161 (213)
Q Consensus 83 ~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~GT~V~v~~lf~~~p~r~~~~ 161 (213)
.+|.....++|++|+||++++++|+++|+|++.++..+|.+.+. +|.+.. ..+...++||+|+|++||+|+|+|++++
T Consensus 89 ~~dl~~i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~-~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k~l 167 (348)
T 3na3_A 89 FEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYS-DGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKAL 167 (348)
T ss_dssp C---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEE-TTEESSCCEEECCCSEEEEEEESTTTTCHHHHHTS
T ss_pred chhhhccccCCcCChHHHHhhcccEEEEEEEECCCCceEEEEEe-CCEEeeeeeEecCCCCcEEEECcccccCchhhhhc
Confidence 88888888999999999999999999999999998889999986 576542 2344567999999999999999999998
Q ss_pred hcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEE--EEeCCCCcccccc
Q psy5349 162 SSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVI--WQKNPVWTVRYLF 212 (213)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~--~~~~~~~~~~~~~ 212 (213)
++. ..+++.+.+++++||+.||+|+|+|.++++.. |+.++..++++++
T Consensus 168 k~~---~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i 217 (348)
T 3na3_A 168 KNP---SEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNI 217 (348)
T ss_dssp CCH---HHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHH
T ss_pred ccc---HHHHHHHHHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHH
Confidence 765 47899999999999999999999999998665 7777877776654
No 3
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=100.00 E-value=1.8e-42 Score=295.85 Aligned_cols=201 Identities=31% Similarity=0.565 Sum_probs=177.3
Q ss_pred CccccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCc
Q psy5349 1 MSINILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKI 80 (213)
Q Consensus 1 m~i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~ 80 (213)
|+|++||++++++|+||++|.+|.++|+|||+||+||+++.|.|.+..++...|+|.|||+||++++++.+|.+|++||.
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~ 82 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 82 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSC
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCc
Confidence 88999999999999999999999999999999999999999999998765568999999999999999999999999997
Q ss_pred CCcccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCe-EEEeccCCCCCCeEEEEeccccCchHHHH
Q psy5349 81 TDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGE-VTSTQPSHFPNGTTVSVKNLFHNLPVRKQ 159 (213)
Q Consensus 81 ~~~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~GT~V~v~~lf~~~p~r~~ 159 (213)
...+|.....++|++|+||++++++|+++|+|++.++..+|.+..+ ++. .....+...++||+|++.+||+|+|+|++
T Consensus 83 ~~~~d~~~~~~~G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~GT~V~v~~Lf~n~P~r~k 161 (333)
T 1b63_A 83 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAE-GRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRK 161 (333)
T ss_dssp CSHHHHHTCCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEE-TTTTEEEEEEECCCSEEEEEEESTTTTCHHHHH
T ss_pred cccchhhhccccCccccchhhhhcCCcEEEEEecCCCceEEEEEEc-CCcceEeeecccCCCCCEEEEecccccchhhhh
Confidence 6655666667899999999999999999999999887777887554 332 22223345679999999999999999999
Q ss_pred HhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCC
Q psy5349 160 YLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPV 205 (213)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~ 205 (213)
++++. ..+++.+.++++.||+++|+++|+|.++++.++.+++.
T Consensus 162 flk~~---~~e~~~i~~~~~~~al~~p~v~~~l~~ng~~~~~~~~~ 204 (333)
T 1b63_A 162 FLRTE---KTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAV 204 (333)
T ss_dssp TCCCH---HHHHHHHHHHHHHHHHHCTTCEEEEEETTEEEEEECCC
T ss_pred hhccH---HHHHHHHHHHHHHHhccCCCcEEEEEECCEEEEecCCC
Confidence 87754 47889999999999999999999999999999998873
No 4
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=100.00 E-value=2.5e-42 Score=297.78 Aligned_cols=208 Identities=35% Similarity=0.574 Sum_probs=162.8
Q ss_pred ccccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcC
Q psy5349 2 SINILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKIT 81 (213)
Q Consensus 2 ~i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~ 81 (213)
+|++||+.++++|+||++|.+|.++|+|||+||+||+++.|.|.+..++...|+|.|||+||++++++.+|.+|+++|..
T Consensus 14 ~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~ 93 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQ 93 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC--------
T ss_pred hhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhccccccc
Confidence 39999999999999999999999999999999999999999999976555599999999999999999999999999987
Q ss_pred CcccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHHH-H
Q psy5349 82 DITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQ-Y 160 (213)
Q Consensus 82 ~~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~~-~ 160 (213)
..+|...+.++|++|+||++++++|.++|+|++.++..+|.|.++++|.+....+...++||+|+|.+||+|+|+|++ +
T Consensus 94 ~~~dl~~i~s~G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~~~~~~GT~V~v~~LF~n~P~R~k~f 173 (365)
T 1h7s_A 94 EFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEF 173 (365)
T ss_dssp --CCTTCSEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEEEEECCCCSEEEEEEESTTTTSHHHHHHH
T ss_pred cccchhcccccCCCCchhhhhhhhccEEEEEccCCCcceEEEEEcCCCceEeecccCCCCCcEEEEeecccccchhhhhh
Confidence 766766677899999999999999999999999888788999997678776555566689999999999999999998 5
Q ss_pred hhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC-----EEEEEeCCCCcccccc
Q psy5349 161 LSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK-----CVIWQKNPVWTVRYLF 212 (213)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~-----~~~~~~~~~~~~~~~~ 212 (213)
+++. ..+++.+.+++++||+.+|+++|++.+++ +..|++++..++++.+
T Consensus 174 lk~~---~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i 227 (365)
T 1h7s_A 174 QRNI---KKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENI 227 (365)
T ss_dssp HHTH---HHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHH
T ss_pred ccch---HHHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHH
Confidence 5544 47899999999999999999999999876 7889999888776543
No 5
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.96 E-value=2.6e-29 Score=200.01 Aligned_cols=163 Identities=20% Similarity=0.332 Sum_probs=115.0
Q ss_pred CCCccc--CHHHHHHHHHHchhhh---C-CCeeEEEEEcCCcceEEEEeCCCCCCccc--------HHH-HHhhcccCCc
Q psy5349 16 TSQIIT--SVSTAVKELIENAIDA---K-ATSIQINLMNQGLDLIEVKDDGSGIPTQD--------VPL-ICQAATTSKI 80 (213)
Q Consensus 16 ~~~~i~--~~~~~v~eLi~NA~DA---~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~--------l~~-~~~~~~~sk~ 80 (213)
.|.+|- ++.++|+|||+||+|| + ++.|.|.+.+++ .|+|.|||+|||.++ ++. ++.++++||+
T Consensus 9 pgmyig~~~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~ 86 (201)
T 3fv5_A 9 PGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 86 (201)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC------
T ss_pred CccEECCCChhhhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--EEEEEECCCCcCcccccccCcchhheeeeeeccccCc
Confidence 444553 4599999999999999 5 999999997655 899999999999998 455 5789999998
Q ss_pred CCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEec----cC-CCCCCeEEEEeccccCc
Q psy5349 81 TDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQ----PS-HFPNGTTVSVKNLFHNL 154 (213)
Q Consensus 81 ~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~----~~-~~~~GT~V~v~~lf~~~ 154 (213)
.+ +. ...++|++|+||++++++|+ ++|+|++.+. .|.+.+. +|....+. +. ....||+|+|.
T Consensus 87 ~~--~~-~~~s~GfrGeglssinalS~~l~v~t~~~g~--~~~~~~~-~G~~~~~~~~~g~~~~~~~GT~V~f~------ 154 (201)
T 3fv5_A 87 SN--KN-YQFSGGLHGVGISVVNALSKRVEVNVRRDGQ--VYNIAFE-NGEKVQDLQVVGTCGKRNTGTSVHFW------ 154 (201)
T ss_dssp ------------------CHHHHHTEEEEEEEEEETTE--EEEEEEE-TTEEEEEEEEEEECCTTCCEEEEEEE------
T ss_pred CC--Cc-ccccCcccceecchhhcccceEEEEEEecCc--eEEEEEe-CCEEcccceecccCCCCCCCeEEEEE------
Confidence 64 32 33479999999999999995 9999998764 4777776 57654321 12 15799999996
Q ss_pred hHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC
Q psy5349 155 PVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK 196 (213)
Q Consensus 155 p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~ 196 (213)
|+|++| ++.. .+++.+.++++.+|+.||+|+|+|.++.
T Consensus 155 Pdr~~F-~~~~---~e~~~i~~~l~~lA~l~pgv~~~l~~~r 192 (201)
T 3fv5_A 155 PDETFF-DSPR---FSVSRLTHVLKAKAVLCPGVEITFKDEI 192 (201)
T ss_dssp ECGGGS-SCCC---CCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred ECHHHc-CCCc---cCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 999877 5543 7788999999999999999999999874
No 6
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.95 E-value=4.3e-27 Score=204.13 Aligned_cols=186 Identities=20% Similarity=0.275 Sum_probs=149.8
Q ss_pred ccccCCHHHHHHHhCCCcccCH--HHHHHHHHHchhhh---C-CCeeEEEEEcCCcceEEEEeCCCCCCccc--------
Q psy5349 2 SINILPQSTIRQITTSQIITSV--STAVKELIENAIDA---K-ATSIQINLMNQGLDLIEVKDDGSGIPTQD-------- 67 (213)
Q Consensus 2 ~i~~l~~~~~~~i~~~~~i~~~--~~~v~eLi~NA~DA---~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~-------- 67 (213)
+|+.|..--.=+.+.|.||-+. .++|+|||+||+|+ + ++.|.|.+..++ .|+|.|||+|||.++
T Consensus 9 ~i~~L~gle~vr~RPgmYiGs~~~~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~~~ 86 (390)
T 1s16_A 9 AIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPA 86 (390)
T ss_dssp GCEECCTTHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTTCSBH
T ss_pred HcEEcchhHHHhhCCceeecCCcHHHHHHHHHHHHHHHHhcCCCCEEEEEEecCC--EEEEEECCCCcCcccccccCcch
Confidence 3777887666677788888544 99999999999999 4 999999998765 899999999999998
Q ss_pred HHHHHhh-cccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe-c--c-CC-CC
Q psy5349 68 VPLICQA-ATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST-Q--P-SH-FP 140 (213)
Q Consensus 68 l~~~~~~-~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~-~--~-~~-~~ 140 (213)
++.+|.+ |++||+.+ ..+..+.|++|+|+++++++|+ ++|+|++.+ ..|.+.+. +|....+ . . .. ..
T Consensus 87 ~e~v~~~lhagsKf~~---~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~-~G~~~~~~~~~g~~~~~~ 160 (390)
T 1s16_A 87 VELILCRLHAGGKFSN---KNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFE-NGEKVQDLQVVGTCGKRN 160 (390)
T ss_dssp HHHHHHCTTEESCSSS---SSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEE-TTEEEEEEEEEEECCTTC
T ss_pred hhheeeeecccCCcCC---CcccccCCccccchHHHHHhhcccEEEEEECC--cEEEEEEe-CCcccccceecccccCCC
Confidence 7777776 88888754 2334588999999999999996 999998765 46777776 4654331 1 1 22 26
Q ss_pred CCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeCCC
Q psy5349 141 NGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKNPV 205 (213)
Q Consensus 141 ~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~~~ 205 (213)
+||+|++. |++++| ... ..+++.+.++++.+|+.||+++|+|.+++ +..|+++++
T Consensus 161 ~GT~V~f~------Pd~~~F-~~~---~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gG 218 (390)
T 1s16_A 161 TGTSVHFW------PDETFF-DSP---RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG 218 (390)
T ss_dssp CEEEEEEE------ECGGGS-SCC---SCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSSC
T ss_pred CceEEEEE------ECcccc-Ccc---cccHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEcCCc
Confidence 89999998 888877 433 26778899999999999999999999988 788988874
No 7
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.95 E-value=3.8e-27 Score=204.42 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=148.1
Q ss_pred ccccCCHHHHHHHhCCCcc------cCHHHHHHHHHHchhhh---C-CCeeEEEEEcCCcceEEEEeCCCCCCccc----
Q psy5349 2 SINILPQSTIRQITTSQII------TSVSTAVKELIENAIDA---K-ATSIQINLMNQGLDLIEVKDDGSGIPTQD---- 67 (213)
Q Consensus 2 ~i~~l~~~~~~~i~~~~~i------~~~~~~v~eLi~NA~DA---~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~---- 67 (213)
+|+.|..--.=+.+.|.|| +.|.++|+|||+||+|+ + ++.|.|.+..++ .|+|.|||+|||.++
T Consensus 8 ~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~ 85 (391)
T 1ei1_A 8 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPEE 85 (391)
T ss_dssp GCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSBCTTT
T ss_pred HCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC--EEEEEECCCCcccCccccc
Confidence 3677777666666677776 27899999999999999 5 999999998765 999999999999998
Q ss_pred ----HHHHHh-hcccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEec---cCC
Q psy5349 68 ----VPLICQ-AATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQ---PSH 138 (213)
Q Consensus 68 ----l~~~~~-~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~---~~~ 138 (213)
++.+|. .+++||+.+ ..+..+.|++|+|+++++++|+ ++|++++.+ ..|.+.+. +|....+. ...
T Consensus 86 ~~~~~elv~~~lhagsKf~~---~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~-~G~~~~~l~~~~~~ 159 (391)
T 1ei1_A 86 GVSAAEVIMTVLHAGGKFDD---NSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYE-HGVPQAPLAVTGET 159 (391)
T ss_dssp SSBHHHHHHHSTTEESCSSS---SSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEE-TTEESSCCEEEEEC
T ss_pred CcchHHHhheeccccCCcCC---CcccccCCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEc-CCcccccceeccCc
Confidence 556666 788999864 2344588999999999999997 999998765 46777776 45432210 112
Q ss_pred CCCCeEEEEeccccCchHHHHHhhc-chhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeCCC
Q psy5349 139 FPNGTTVSVKNLFHNLPVRKQYLSS-KNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKNPV 205 (213)
Q Consensus 139 ~~~GT~V~v~~lf~~~p~r~~~~~~-~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~~~ 205 (213)
..+||+|++. |++++| .. . ..+++.+.++++.+|+.||+++|+|.+++ +..|+++++
T Consensus 160 ~~~GT~V~f~------Pd~~~F-~~~~---~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~gG 220 (391)
T 1ei1_A 160 EKTGTMVRFW------PSLETF-TNVT---EFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGG 220 (391)
T ss_dssp SCCEEEEEEE------ECTTTC-CSCC---SCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCSH
T ss_pred CCCccEEEEE------EChhhh-CCcc---ccCHHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEcCch
Confidence 4799999997 888877 43 3 25778899999999999999999999987 678888874
No 8
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.94 E-value=5.8e-27 Score=188.49 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=124.5
Q ss_pred cCHHHHHHHHHHchhhh----CCCeeEEEEEcCCcceEEEEeCCCCCCcccH--------HHHH-hhcccCCcCCccccc
Q psy5349 21 TSVSTAVKELIENAIDA----KATSIQINLMNQGLDLIEVKDDGSGIPTQDV--------PLIC-QAATTSKITDITDLD 87 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA----~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l--------~~~~-~~~~~sk~~~~~~~~ 87 (213)
..|.++|+|||+||+|+ .++.|.|.++.++ .|+|.|||+|||.+.. +.+| ..++++|+.+ ..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g--~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~---~~ 108 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD---NS 108 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCT---TC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--cEEEEECCcCcccccccccCcchhhheeeecccCCCcCC---Cc
Confidence 46899999999999999 7999999997664 8999999999999874 4555 6888999864 24
Q ss_pred ccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe---ccCCCCCCeEEEEeccccCchHHHHHhhc
Q psy5349 88 SLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST---QPSHFPNGTTVSVKNLFHNLPVRKQYLSS 163 (213)
Q Consensus 88 ~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GT~V~v~~lf~~~p~r~~~~~~ 163 (213)
+..+.|++|+|+++++++|+ ++|++++.+. .|...|. +|....+ .+....+||+|++. |++++|...
T Consensus 109 yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~--~~~~~f~-~G~~~~~l~~~g~~~~~GT~V~F~------Pd~~~F~~~ 179 (220)
T 4duh_A 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGK--IHRQIYE-HGVPQAPLAVTGETEKTGTMVRFW------PSLETFTNV 179 (220)
T ss_dssp --------CCCHHHHHHTEEEEEEEEEETTE--EEEEEEE-TTEESSSCEEEEECSCCEEEEEEE------ECTTTCCSS
T ss_pred cccccCccceecchhcccccceEEEEEECCE--EEEEEec-CCcCcCCceeccccCCCCcEEEEE------ECHHHhCCc
Confidence 45788999999999999996 9999988764 4666665 5654321 12345799999986 888777554
Q ss_pred chhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeC
Q psy5349 164 KNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKN 203 (213)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~ 203 (213)
. ..+++.|.++|+.+|..+|+++|+|.+.. +..|+++
T Consensus 180 ~---~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~~~~~y~ 219 (220)
T 4duh_A 180 T---EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE 219 (220)
T ss_dssp C---SCCHHHHHHHHHHHHHHCTTSEEEEEETTTCCEEEEC--
T ss_pred c---cCCHHHHHHHHHHHHhcCCCCEEEEEccCCCcEEEEEcC
Confidence 2 26778899999999999999999999864 5566554
No 9
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.92 E-value=3.8e-25 Score=178.41 Aligned_cols=166 Identities=17% Similarity=0.293 Sum_probs=121.5
Q ss_pred cCHHHHHHHHHHchhhh----CCCeeEEEEEcCCcceEEEEeCCCCCCccc-------HHHHH-hhcccCCcCCcccccc
Q psy5349 21 TSVSTAVKELIENAIDA----KATSIQINLMNQGLDLIEVKDDGSGIPTQD-------VPLIC-QAATTSKITDITDLDS 88 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA----~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~-------l~~~~-~~~~~sk~~~~~~~~~ 88 (213)
..+.++|+|+|+||+|+ .++.|.|.+..++ .|+|.|||+|||.+. ++.+| ..++++|+.+ ..+
T Consensus 39 ~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g--~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~---~~y 113 (226)
T 4emv_A 39 AGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG--SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQ---GGY 113 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-------------
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC--eEEEEEcCCCccccccccCceehheeEEeecccCccCc---cce
Confidence 45899999999999998 7899999997665 899999999999998 77766 5788888754 345
Q ss_pred cccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEE----eccC-CCCCCeEEEEeccccCchHHHHHhh
Q psy5349 89 LSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTS----TQPS-HFPNGTTVSVKNLFHNLPVRKQYLS 162 (213)
Q Consensus 89 ~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~----~~~~-~~~~GT~V~v~~lf~~~p~r~~~~~ 162 (213)
..+.|++|+|+++++++|+ ++|++++.+. .|...|..+|.... ..+. ...+||+|++. |++..| .
T Consensus 114 k~SgGlhGvG~svvNALS~~l~v~v~r~g~--~~~q~f~~Gg~~~~~l~~ig~~~~~~~GT~V~F~------PD~~iF-~ 184 (226)
T 4emv_A 114 KTSGGLHGVGSSVVNALSSWLEVEITRDGA--VYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFM------PDATIF-S 184 (226)
T ss_dssp ----CGGGCCHHHHHHTEEEEEEEEEETTE--EEEEEEETTTEESSCSEEEEECCTTCCEEEEEEE------ECTTTC-S
T ss_pred EeccccccccchhhhhcccceEEEEEeCCc--EEEEEECCCCEEcCCceEecccCCCCCCeEEEEE------ECHHHc-C
Confidence 6788999999999999997 9999988764 46666764325432 1122 25799999997 777666 3
Q ss_pred cchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeC
Q psy5349 163 SKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKN 203 (213)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~ 203 (213)
.. ..+++.+.++|+.+|..+|+++|+|.+.. +..|+++
T Consensus 185 ~~---~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~~~f~y~ 225 (226)
T 4emv_A 185 TT---DFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIEFHYE 225 (226)
T ss_dssp CC---CCCHHHHHHHHHHHHHHHCSCEEEEEETTTCCEEEECCC
T ss_pred CC---CcCHHHHHHHHHHHhhcCCCCEEEEEecCCCcEEEEEcC
Confidence 33 25678899999999999999999999864 4566654
No 10
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.92 E-value=6.4e-25 Score=189.16 Aligned_cols=163 Identities=13% Similarity=0.150 Sum_probs=130.6
Q ss_pred cCHHHHHHHHHHchhhh----CCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCc
Q psy5349 21 TSVSTAVKELIENAIDA----KATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRG 96 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA----~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 96 (213)
..|.++|+|||+||+|+ +++.|.|++++++ .|+|.|||+|||. +.++.++++||+.+.+. ...++..|
T Consensus 29 ~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g--~I~V~DnGrGIp~---e~v~~lhagsKf~~~~~---~~~y~vsG 100 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG--SIALFCTSRTVTA---ENLVRVATGAGFLGRPP---GDGWGWDS 100 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEEEESSCCH---HHHHHHHTTTTGGGSSC---CCSTTTTS
T ss_pred chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC--EEEEEECCCCcCH---hHeeeeecCCCcCCCcc---cccccccC
Confidence 47899999999999998 7999999998776 8999999999999 55568899999875320 02344556
Q ss_pred hhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeE------EEe-cc--CCCCCCeEEEEeccccCchHHHHHhhcchh
Q psy5349 97 EALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEV------TST-QP--SHFPNGTTVSVKNLFHNLPVRKQYLSSKNR 166 (213)
Q Consensus 97 ~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~------~~~-~~--~~~~~GT~V~v~~lf~~~p~r~~~~~~~~~ 166 (213)
|+++++++|+ ++|+|++.+. .|.+.+. .|.. ..+ .+ ...++||+|++. |+|++| +..
T Consensus 101 -Gls~vnalSs~l~v~t~r~g~--~~~~~~~-~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~------Pd~~~F-~~~-- 167 (369)
T 3cwv_A 101 -MLVVSLALSSRYQVDIWADGR--QWRVMGE-HGHPQGEGAAVTPMEPMPVSAERGVRVHFV------PDATIF-EVL-- 167 (369)
T ss_dssp -SHHHHHHTEEEEEEEEEETTE--EEEEEEE-TTEECTTCEEESSCCCCSSCCSEEEEEEEE------ECTTTC-SCC--
T ss_pred -HHHHHHHhhceEEEEEEECCC--EEEEEEe-CCcccccccccCCceEecccCCCCCEEEEE------ECHHHh-CCc--
Confidence 8999999986 9999998654 6777776 5655 321 11 224789999998 888877 443
Q ss_pred hHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeCCC
Q psy5349 167 MLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKNPV 205 (213)
Q Consensus 167 ~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~~~ 205 (213)
..+++.+.++++.+|+.||+++|+|.+++ +..|++++.
T Consensus 168 -~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gG 208 (369)
T 3cwv_A 168 -AFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPGG 208 (369)
T ss_dssp -CCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTTH
T ss_pred -cccHHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCch
Confidence 26778899999999999999999999998 889999874
No 11
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.92 E-value=1.5e-25 Score=181.11 Aligned_cols=158 Identities=23% Similarity=0.283 Sum_probs=117.4
Q ss_pred cccCHHHHHHHHHHchhhhCCC----------------eeEEEEE-cCCcceEEEEeCCCCCCcccHHHHHhhcccCCcC
Q psy5349 19 IITSVSTAVKELIENAIDAKAT----------------SIQINLM-NQGLDLIEVKDDGSGIPTQDVPLICQAATTSKIT 81 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~a~----------------~I~I~~~-~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~ 81 (213)
++.++..+|+|||+||+||+++ .+.|.+. +.+...|+|.|||+||+.+++...+.++++|+..
T Consensus 29 lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~~ 108 (228)
T 3t0h_A 29 FYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTK 108 (228)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTGGGSCHHHHHH
T ss_pred hcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHHHHHHhhccccch
Confidence 4445688999999999999864 3455543 2344599999999999999999888888887654
Q ss_pred Cccc-c---cccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEecc--CCCCCCeEEEEeccccCc
Q psy5349 82 DITD-L---DSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQP--SHFPNGTTVSVKNLFHNL 154 (213)
Q Consensus 82 ~~~~-~---~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~GT~V~v~~lf~~~ 154 (213)
.+.+ + ....++|++|+||+|++.+|+ |+|.|++.+ ..++.|....++.+..... ...++||+|+|.
T Consensus 109 ~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g~~~~~v~~~~~~~~~~GT~I~v~------ 181 (228)
T 3t0h_A 109 AFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH------ 181 (228)
T ss_dssp HHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSSCCSSEEEEEEE------
T ss_pred hhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcCCceEEEeecCCCCCCCCcEEEEE------
Confidence 4322 1 346789999999999999996 999999876 4689998886666554321 245799999998
Q ss_pred hHHHHHhhcchhhHHHHHHHHHHHHHHh--ccCCCeEE
Q psy5349 155 PVRKQYLSSKNRMLEELRKVERVVKCLS--LIHCKLRV 190 (213)
Q Consensus 155 p~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~i~f 190 (213)
++.......+..++.++++.|| +.+| |.+
T Consensus 182 ------Lk~~~~E~~e~~~i~~iv~~~a~~l~~P-i~~ 212 (228)
T 3t0h_A 182 ------LKEDQTEYLEERRIKEIVKKHSQFIGYP-ITL 212 (228)
T ss_dssp ------ECGGGGGGGSHHHHHHHHHHHSTTCSSC-EEE
T ss_pred ------ECCchhhhhhHHHHHHHHHHHHhhCCCC-eEE
Confidence 3332222233468899999999 9898 444
No 12
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.92 E-value=3.6e-25 Score=180.26 Aligned_cols=166 Identities=16% Similarity=0.259 Sum_probs=123.5
Q ss_pred cccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhC----------------CCe--eEEEEEcCCcceEEEEeCCCCCC
Q psy5349 3 INILPQSTIRQITTSQIITSVSTAVKELIENAIDAK----------------ATS--IQINLMNQGLDLIEVKDDGSGIP 64 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~----------------a~~--I~I~~~~~~~~~i~V~DnG~GI~ 64 (213)
|+.|++.+.+.|.+ ++..+|+|||+||+||+ +.. |.|.+..++ ..|+|.|||+||+
T Consensus 33 i~~L~~~l~~~lys-----~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~-~~i~I~DnG~GMs 106 (235)
T 2ior_A 33 VKQLLHLMIHSLYS-----NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMT 106 (235)
T ss_dssp HHHHHHHHHHHTGG-----GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT-TEEEEEECSSCCC
T ss_pred HHHHHHHHHHhhcC-----CHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc-eEEEEEECCCCCC
Confidence 45566666666655 67889999999999998 433 555554433 4899999999999
Q ss_pred cccHHHHHhhcccCCcCCccc------ccccccCCCCchhhhhhhccCe-eEEEEeeCCC--CceEEEEEccCCeEEEec
Q psy5349 65 TQDVPLICQAATTSKITDITD------LDSLSSYGFRGEALNALCQIGE-VSVTTKTNSD--PVASMYKFSHTGEVTSTQ 135 (213)
Q Consensus 65 ~~~l~~~~~~~~~sk~~~~~~------~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~--~~~~~~~~~~~g~~~~~~ 135 (213)
.+++...+..+++|+...+.+ .......|++|+|+++++.+++ |+|.|+..+. ..++.|..+.++.+....
T Consensus 107 ~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~i~~ 186 (235)
T 2ior_A 107 RDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVAD 186 (235)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEEEEE
T ss_pred HHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEEEee
Confidence 999999998888886433211 0123567999999999988887 9999999876 678899887666655443
Q ss_pred cCCCCCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHh--ccCC
Q psy5349 136 PSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLS--LIHC 186 (213)
Q Consensus 136 ~~~~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p 186 (213)
.....+||+|++. +. +.+++|+ +..++.++++.|| +.+|
T Consensus 187 ~~~~~~GT~V~v~--Lk--~~~~~~~--------e~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 187 ITKEDRGTEITLH--LR--EGEDEFL--------DDWRVRSIISKYSDHIALP 227 (235)
T ss_dssp ECCCSCEEEEEEE--EC--TTCGGGG--------CHHHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCEEEEEE--Ec--CchhhhC--------CHHHHHHHHHHHhccCCCC
Confidence 2455799999997 22 3344443 4568889999999 8888
No 13
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.91 E-value=4.1e-25 Score=180.66 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=117.4
Q ss_pred cccCHHHHHHHHHHchhhhCCC----------------eeEEEEE-cCCcceEEEEeCCCCCCcccHHHHHhhcccCCcC
Q psy5349 19 IITSVSTAVKELIENAIDAKAT----------------SIQINLM-NQGLDLIEVKDDGSGIPTQDVPLICQAATTSKIT 81 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~a~----------------~I~I~~~-~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~ 81 (213)
++.+...+|+|||+||+||+++ .+.|.+. +.+...|+|.|||+||+.+++...+.++++|+..
T Consensus 57 lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~ 136 (256)
T 3o0i_A 57 FYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTK 136 (256)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHHHHHhhcccccc
Confidence 3445678999999999999864 3444443 2334599999999999999998888887777654
Q ss_pred Cccc-c---cccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEec--cCCCCCCeEEEEeccccCc
Q psy5349 82 DITD-L---DSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQ--PSHFPNGTTVSVKNLFHNL 154 (213)
Q Consensus 82 ~~~~-~---~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~GT~V~v~~lf~~~ 154 (213)
.+.+ + ....++|++|+||+|++.+|+ |+|.|++.+ ..++.|....+|.+.... +...++||+|+|.
T Consensus 137 ~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~gg~~~~v~~~~~~~~~~GT~I~l~------ 209 (256)
T 3o0i_A 137 AFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH------ 209 (256)
T ss_dssp HHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSSCCSSEEEEEEE------
T ss_pred chhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEeccceEEEeeCCCCCCCCCcEEEEE------
Confidence 4322 1 346789999999999999996 999999876 468999988666665433 2345799999998
Q ss_pred hHHHHHhhcchhhHHHHHHHHHHHHHHh--ccCCCeEE
Q psy5349 155 PVRKQYLSSKNRMLEELRKVERVVKCLS--LIHCKLRV 190 (213)
Q Consensus 155 p~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~i~f 190 (213)
++..+....+..+++++++.|| +.+| |.+
T Consensus 210 ------LK~~~~e~~e~~~I~~iv~k~s~~l~~P-I~~ 240 (256)
T 3o0i_A 210 ------LKEDQTEYLEERRIKEIVKKHSQFIGYP-ITL 240 (256)
T ss_dssp ------ECGGGGGGGCHHHHHHHHHHHCTTCSSC-EEE
T ss_pred ------EcCcchhhccHHHHHHHHHHHHhhCCCC-eEE
Confidence 2222222344568899999999 9999 444
No 14
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.91 E-value=4.4e-24 Score=185.45 Aligned_cols=186 Identities=22% Similarity=0.288 Sum_probs=144.0
Q ss_pred ccccCCHHHHHHHhCCCcc-----cCHHHHHHHHHHchhhhC----CCeeEEEEEcCCcceEEEEeCCCCCCcccHHH--
Q psy5349 2 SINILPQSTIRQITTSQII-----TSVSTAVKELIENAIDAK----ATSIQINLMNQGLDLIEVKDDGSGIPTQDVPL-- 70 (213)
Q Consensus 2 ~i~~l~~~~~~~i~~~~~i-----~~~~~~v~eLi~NA~DA~----a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~-- 70 (213)
+|+.|..--.=+.+.+.+| ..+.++|+|||+||+|+. ++.|.|.+..++ .|+|.|||+|||.++++.
T Consensus 7 ~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~--~i~V~DnG~GIp~~~~~~~~ 84 (390)
T 1kij_A 7 AIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEEG 84 (390)
T ss_dssp CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTTT
T ss_pred HCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCC--EEEEEEcCCCCCHHHhhhcc
Confidence 3677777666666677777 668999999999999986 889999997654 899999999999999765
Q ss_pred ------HHhh-cccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEE-e---ccCC
Q psy5349 71 ------ICQA-ATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTS-T---QPSH 138 (213)
Q Consensus 71 ------~~~~-~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~-~---~~~~ 138 (213)
+|.+ +.++|+.. .....+.|++|+||++++.+|+ ++|+|+..+ ..+.+.+. .|.... . .+..
T Consensus 85 ~~~~e~if~~~~~~~kf~~---~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~-~G~~~~~~~~~~~~~ 158 (390)
T 1kij_A 85 KPAVEVIYNTLHSGGKFEQ---GAYKVSGGLHGVGASVVNALSEWTVVEVFREG--KHHRIAFS-RGEVTEPLRVVGEAP 158 (390)
T ss_dssp EEHHHHHHHSSCEESGGGG---SSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEE-TTEEEEEEEEEEECG
T ss_pred ccchhhheeeeeecccccC---ccccccCCCCCcceeeecccccceEEEEecCC--cEEEEEEc-CCcccccceeecccc
Confidence 7765 55666532 2223467899999999999997 999999765 35777776 455432 1 1121
Q ss_pred -CCCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeCCC
Q psy5349 139 -FPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKNPV 205 (213)
Q Consensus 139 -~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~~~ 205 (213)
..+||+|++. |++++| ... ..+++.+.++|+.+|+.||+++|+|.+++ +..|+++++
T Consensus 159 ~~~~GT~V~f~------Pd~~~F-~~~---~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~~~G 219 (390)
T 1kij_A 159 RGKTGTRVTFK------PDPEIF-GNL---RFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKGG 219 (390)
T ss_dssp GGCCEEEEEEE------ECHHHH-TTC---CCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCTTH
T ss_pred CCCCCcEEEEE------EChHHh-CCc---cccHHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEcCCc
Confidence 4689999997 888776 433 25678899999999999999999999986 578888874
No 15
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=99.91 E-value=1.1e-23 Score=182.72 Aligned_cols=185 Identities=19% Similarity=0.284 Sum_probs=125.7
Q ss_pred cccCCHHHHHHHhCCCcc--cCHHHHHHHHHHchhhh----CCCeeEEEEEcCCcceEEEEeCCCCCCcccH--------
Q psy5349 3 INILPQSTIRQITTSQII--TSVSTAVKELIENAIDA----KATSIQINLMNQGLDLIEVKDDGSGIPTQDV-------- 68 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i--~~~~~~v~eLi~NA~DA----~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l-------- 68 (213)
|+.|..--.=+.+.|.|| +++.++|.|+|+||+|+ .++.|.|++.+++ .|+|.|||+|||.+..
T Consensus 29 I~vL~glE~VRkRPgMYiGst~~~hlv~EivdNsiDea~ag~~~~I~V~i~~dg--sI~V~DnGrGIPv~~h~~~~~~~~ 106 (408)
T 3lnu_A 29 IEVLSGLDPVKRRPGMYTDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGV 106 (408)
T ss_dssp -----CCHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTCSBHH
T ss_pred ceeccccHHHhcCCccEECCCCcchhhHHHHHHHHHHhhcCCCceEEEEEeCCC--eEEEEEcCCCCCcccccccCCcch
Confidence 666766444556677788 56799999999999998 7899999997665 8999999999999873
Q ss_pred HHHH-hhcccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe----ccC-CCCC
Q psy5349 69 PLIC-QAATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST----QPS-HFPN 141 (213)
Q Consensus 69 ~~~~-~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~----~~~-~~~~ 141 (213)
+.+| ..++++|+++ ..+..+.|++|+|+++++++|+ ++|++++.+. .|...|. .|....+ .+. ...+
T Consensus 107 e~i~t~lhaggKfd~---~~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk--~~~q~f~-~G~~~~~l~~ig~~~~~~~ 180 (408)
T 3lnu_A 107 ELILTRLHAGGKFNN---RNYTFSGGLHGVGVSVVNALSTKVELFIKREGS--EHRMEFR-DGNAASKLEVVGTVGKKNT 180 (408)
T ss_dssp HHHHHCC-----------------------CHHHHHHTEEEEEEEEEETTE--EEEEEEE-TTEECSCCEEEEECCTTCC
T ss_pred heEEEecccCCCcCC---CceeecCCccccccceehhccCeEEEEEEECCE--EEEEEEC-CCEECCCceEeccCcCCCC
Confidence 4555 6788888753 3455788999999999999997 9999998774 4666665 5554321 123 2479
Q ss_pred CeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeCCC
Q psy5349 142 GTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKNPV 205 (213)
Q Consensus 142 GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~~~ 205 (213)
||+|++. |++..| ... ..+++.+.++|+.+|..+|+++|.|.+.. +..|++++.
T Consensus 181 GT~V~F~------PD~~iF-~~~---~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~~~~~f~yegG 237 (408)
T 3lnu_A 181 GTRLRFW------ADPKYF-DTP---KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYFENG 237 (408)
T ss_dssp EEEEEEE------ECGGGS-SCS---CCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEEECSSS
T ss_pred CcEEEEE------ECHHHh-CCC---CcCHHHHHHHHHHHHhhcCCCEEEEEeccCCceeEEEcCch
Confidence 9999987 888776 433 26778899999999999999999999863 678888764
No 16
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.90 E-value=9.1e-24 Score=183.41 Aligned_cols=164 Identities=18% Similarity=0.227 Sum_probs=125.4
Q ss_pred ccCHHHHHHHHHHchhhhC-----CCeeEEEEEcCCcceEEEEeCCCCCCccc--------HHHHHh-hcccCCcCCccc
Q psy5349 20 ITSVSTAVKELIENAIDAK-----ATSIQINLMNQGLDLIEVKDDGSGIPTQD--------VPLICQ-AATTSKITDITD 85 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~DA~-----a~~I~I~~~~~~~~~i~V~DnG~GI~~~~--------l~~~~~-~~~~sk~~~~~~ 85 (213)
...|.++|+|||+||+|++ ++.|.|+++.++ ..|+|.|||+|||.++ ++.+|. +++++|+.+ +
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~-~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~--~ 126 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPEN-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD--D 126 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCG--G
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCC-CEEEEEECCCcccCccccccCccchhheeeeecccCCCCC--C
Confidence 4679999999999999987 789999998753 3999999999999987 666776 789999864 2
Q ss_pred ccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEec---cCCCCCCeEEEEeccccCchHHHHHh
Q psy5349 86 LDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQ---PSHFPNGTTVSVKNLFHNLPVRKQYL 161 (213)
Q Consensus 86 ~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~GT~V~v~~lf~~~p~r~~~~ 161 (213)
.+..+.|++|+|+++++++|+ ++|++++......|...+..+....... +....+||+|++. |++++|
T Consensus 127 -~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~------Pd~~iF- 198 (400)
T 1zxm_A 127 -EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQ------PDLSKF- 198 (400)
T ss_dssp -GCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSCCEEEEEEE------ECGGGG-
T ss_pred -cccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceeccCCCCCccEEEEE------EChHHh-
Confidence 334589999999999999987 9999988655566777776432332211 1224589999998 888776
Q ss_pred hcchhhHHHHHH-HHHHHHHHhccCCCeEEEEEEC
Q psy5349 162 SSKNRMLEELRK-VERVVKCLSLIHCKLRVTLTHN 195 (213)
Q Consensus 162 ~~~~~~~~~~~~-~~~~l~~~~~~~p~i~f~l~~~ 195 (213)
... ....+.-. +.++++.+|..||+++|+|.+.
T Consensus 199 ~~~-ef~~~~~~~l~~rlrelA~lnpgv~i~l~de 232 (400)
T 1zxm_A 199 KMQ-SLDKDIVALMVRRAYDIAGSTKDVKVFLNGN 232 (400)
T ss_dssp TCS-SCCHHHHHHHHHHHHHHHHHSSSCEEEETTE
T ss_pred Cce-eecHHHHHHHHHHHHHHHhhCCCcEEEEecC
Confidence 322 11122222 8899999999999999999763
No 17
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.89 E-value=1.6e-23 Score=188.37 Aligned_cols=174 Identities=16% Similarity=0.277 Sum_probs=131.6
Q ss_pred CcccCHHHHHHHHHHchhhhC----------------CC--eeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCC
Q psy5349 18 QIITSVSTAVKELIENAIDAK----------------AT--SIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSK 79 (213)
Q Consensus 18 ~~i~~~~~~v~eLi~NA~DA~----------------a~--~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk 79 (213)
.++.++..+|+|||+||+||+ +. .|.|.+..++ ..|+|.|||+||+.+++...+..+++|+
T Consensus 23 ~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tiA~Sg 101 (559)
T 1y4s_A 23 SLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMTRDEVIDHLGTIAKSG 101 (559)
T ss_dssp HTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT-TEEEEEECSSCCCHHHHHHHHSCCSCCC
T ss_pred hcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC-cEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 355678999999999999998 43 5777775544 5999999999999999998888888876
Q ss_pred cCCc----cc--ccccccCCCCchhhhhhhccCe-eEEEEeeCCC--CceEEEEEccCCeEEEeccCCCCCCeEEEEecc
Q psy5349 80 ITDI----TD--LDSLSSYGFRGEALNALCQIGE-VSVTTKTNSD--PVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNL 150 (213)
Q Consensus 80 ~~~~----~~--~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~l 150 (213)
...+ .+ ......+|++|+|++|++.+++ |+|.|++.+. ..++.|....++.+........++||+|++.
T Consensus 102 ~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~~~~GT~I~L~-- 179 (559)
T 1y4s_A 102 TKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLH-- 179 (559)
T ss_dssp CCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEE--
T ss_pred cHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeEEeECCCCCCCeEEEEE--
Confidence 5432 11 1345688999999999999987 9999999873 6788898876666554332245799999998
Q ss_pred ccCchHHHHHhhcchhhHHHHHHHHHHHHHHh--ccCCCeEE--------------EEEECCEEEEEeCCC
Q psy5349 151 FHNLPVRKQYLSSKNRMLEELRKVERVVKCLS--LIHCKLRV--------------TLTHNKCVIWQKNPV 205 (213)
Q Consensus 151 f~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~i~f--------------~l~~~~~~~~~~~~~ 205 (213)
+. +.+.+|+ +..+++++++.|| +.+| |.| .+.++++++|..++.
T Consensus 180 Lk--~d~~Efl--------e~~~I~~iv~kys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~lw~~~~~ 239 (559)
T 1y4s_A 180 LR--EGEDEFL--------DDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQALWTRNKS 239 (559)
T ss_dssp EC--TTCGGGS--------CHHHHHHHHHHHHTTCSSC-EEEEEEECSTTSCEEEEEECCCCCCGGGSCGG
T ss_pred Ec--chhhhcc--------hHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCccceecCcc
Confidence 21 2233333 3468889999999 9999 988 567777888887765
No 18
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.88 E-value=1.8e-23 Score=190.10 Aligned_cols=173 Identities=16% Similarity=0.272 Sum_probs=127.4
Q ss_pred cccCHHHHHHHHHHchhhhC----------------CC--eeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCc
Q psy5349 19 IITSVSTAVKELIENAIDAK----------------AT--SIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKI 80 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~----------------a~--~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~ 80 (213)
++.++..+|+|||+||+||+ +. .|.|.+..++ ..|+|.|||+||+.+++...+..+++|+.
T Consensus 24 lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tiA~Sg~ 102 (624)
T 2ioq_A 24 LYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMTRDEVIDHLGTIAKSGT 102 (624)
T ss_dssp HSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHHHHHCC---
T ss_pred cCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC-cEEEEEECCCCCCHHHHHHHHHhhccccc
Confidence 34567899999999999998 43 5777665443 59999999999999999988888877764
Q ss_pred CCc----cc--ccccccCCCCchhhhhhhccCe-eEEEEeeCC--CCceEEEEEccCCeEEEeccCCCCCCeEEEEeccc
Q psy5349 81 TDI----TD--LDSLSSYGFRGEALNALCQIGE-VSVTTKTNS--DPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLF 151 (213)
Q Consensus 81 ~~~----~~--~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf 151 (213)
..+ .+ ......+|++|+|++|++.+|+ |+|.|++.+ ...++.|....++.+........++||+|++. +
T Consensus 103 ~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~~~~GT~I~L~--L 180 (624)
T 2ioq_A 103 KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLH--L 180 (624)
T ss_dssp ------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCEEEEECCSSSEEEEEEE--E
T ss_pred HHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeEEEEECCCCCCCeEEEEE--E
Confidence 332 11 2345678999999999999996 999999987 46788898876665544322245799999998 2
Q ss_pred cCchHHHHHhhcchhhHHHHHHHHHHHHHHh--ccCCCeEE--------------EEEECCEEEEEeCCC
Q psy5349 152 HNLPVRKQYLSSKNRMLEELRKVERVVKCLS--LIHCKLRV--------------TLTHNKCVIWQKNPV 205 (213)
Q Consensus 152 ~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~i~f--------------~l~~~~~~~~~~~~~ 205 (213)
. +.+.+|+ +..+++++++.|| +.+| |.| .+.++++++|..++.
T Consensus 181 k--~d~~Efl--------~~~~i~~ivkkys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~lw~~~~~ 239 (624)
T 2ioq_A 181 R--EGEDEFL--------DDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQALWTRNKS 239 (624)
T ss_dssp C--TTCGGGG--------CHHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCCSCTTTSCTT
T ss_pred c--chhhhcc--------hHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCccceEecCc
Confidence 1 2233333 3568889999999 9999 988 567777888888765
No 19
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.88 E-value=8.5e-23 Score=168.50 Aligned_cols=156 Identities=24% Similarity=0.272 Sum_probs=114.7
Q ss_pred CcccCHHHHHHHHHHchhhhCC----------------CeeEEEEEc-CCcceEEEEeCCCCCCcccHHHHHhhcccCCc
Q psy5349 18 QIITSVSTAVKELIENAIDAKA----------------TSIQINLMN-QGLDLIEVKDDGSGIPTQDVPLICQAATTSKI 80 (213)
Q Consensus 18 ~~i~~~~~~v~eLi~NA~DA~a----------------~~I~I~~~~-~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~ 80 (213)
.++.++..+|+|||+||+||++ ..|.|.+.. .+...|+|.|||+||+.+++...+..+++|+.
T Consensus 64 ~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~ 143 (264)
T 1yc1_A 64 TFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 143 (264)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCH
T ss_pred hccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHHHHHhhccccc
Confidence 4566889999999999999997 567777643 33458999999999999999988888887764
Q ss_pred CCc----ccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEecc--CCCCCCeEEEEeccccC
Q psy5349 81 TDI----TDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQP--SHFPNGTTVSVKNLFHN 153 (213)
Q Consensus 81 ~~~----~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~GT~V~v~~lf~~ 153 (213)
..+ .........|.+|+|+++++.+++ |+|.|+..+. .++.|....++.+..... ...++||+|++. |.
T Consensus 144 ~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~-~~~~w~~~~~~~~~i~~~~~~~~~~GT~I~l~-Lk-- 219 (264)
T 1yc1_A 144 KAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD-EQYAWESSAGGSFTVRTDTGEPMGRGTKVILH-LK-- 219 (264)
T ss_dssp HHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSSCCSSEEEEEEE-EC--
T ss_pred hhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCC-ceEEEEEcCCceEEEeecCCCCCCCCeEEEEE-EC--
Confidence 332 111234577999999999998987 9999998774 578888876665544321 235789999998 21
Q ss_pred chHHHHHhhcchhhHHHHHHHHHHHHHHhccCC
Q psy5349 154 LPVRKQYLSSKNRMLEELRKVERVVKCLSLIHC 186 (213)
Q Consensus 154 ~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 186 (213)
+.++++ .+..+++++++.|+..-|
T Consensus 220 -~~~~e~--------~e~~~i~~lv~k~s~fi~ 243 (264)
T 1yc1_A 220 -EDQTEY--------LEERRIKEIVKKHSQFIG 243 (264)
T ss_dssp -GGGGGG--------GSHHHHHHHHHHHTTTCS
T ss_pred -Cchhhh--------hhHHHHHHHHHHHHhhCC
Confidence 223333 345688899999995433
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.88 E-value=1.4e-22 Score=163.49 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=109.1
Q ss_pred cccCHHHHHHHHHHchhhhCCC----------------eeEEEEEc-CCcceEEEEeCCCCCCcccHHHHHhhcccCCcC
Q psy5349 19 IITSVSTAVKELIENAIDAKAT----------------SIQINLMN-QGLDLIEVKDDGSGIPTQDVPLICQAATTSKIT 81 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~a~----------------~I~I~~~~-~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~ 81 (213)
++.++..+|+|||+||+||+++ .|.|.+.. .+...|+|.|||+||+++++...+..+++|...
T Consensus 23 lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~ 102 (220)
T 2wer_A 23 VYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTK 102 (220)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHHHTTTSCCTTHH
T ss_pred ccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHHHHHHhHhcccch
Confidence 4455678999999999999873 34444432 233489999999999999999888777666321
Q ss_pred C----cccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEeccC---CCCCCeEEEEeccccC
Q psy5349 82 D----ITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQPS---HFPNGTTVSVKNLFHN 153 (213)
Q Consensus 82 ~----~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~GT~V~v~~lf~~ 153 (213)
. ..........|.+|+|+++++.+++ ++|.|+..+. .++.|....++.+...... ..++||+|++. |.
T Consensus 103 ~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~GT~I~l~-Lk-- 178 (220)
T 2wer_A 103 AFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEVNERIGRGTILRLF-LK-- 178 (220)
T ss_dssp HHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSSSEEEEEECSSSCCCSSEEEEEEE-EC--
T ss_pred hHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCC-ceeEEEeCCCCceEeecccCCCCCCCCeEEEEE-EC--
Confidence 1 1111234577999999999999987 9999998764 5788888766665543222 45789999998 22
Q ss_pred chHHHHHhhcchhhHHHHHHHHHHHHHHhccC
Q psy5349 154 LPVRKQYLSSKNRMLEELRKVERVVKCLSLIH 185 (213)
Q Consensus 154 ~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (213)
+.+++++ +..+++++++.|+...
T Consensus 179 -~~~~~~~--------e~~~i~~~v~~~a~~l 201 (220)
T 2wer_A 179 -DDQLEYL--------EEKRIKEVIKRHSEFV 201 (220)
T ss_dssp -TTCGGGG--------CHHHHHHHHHHHCTTC
T ss_pred -cchHHhC--------CHHHHHHHHHHHHhcC
Confidence 2233443 4467889999999543
No 21
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.87 E-value=1.6e-22 Score=160.29 Aligned_cols=154 Identities=15% Similarity=0.242 Sum_probs=116.2
Q ss_pred cCHHHHHHHHHHchhhh---C-CCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCc
Q psy5349 21 TSVSTAVKELIENAIDA---K-ATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRG 96 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA---~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 96 (213)
..|.++|+|||+||+|+ + ++.|.|.+..++ .|+|.|||+|||.+ .+.++|....++..
T Consensus 30 ~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g--~i~V~DnG~Gip~~-------~h~~~~~~~~e~i~--------- 91 (198)
T 3ttz_A 30 RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN--WIKVTDNGRGIPVD-------IQEKMGRPAVEVIL--------- 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG--EEEEEECSSCCCCS-------BCTTTSSBHHHHHH---------
T ss_pred cchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC--eEEEEECCCCcccc-------ccCcCCCccccccc---------
Confidence 45899999999999994 7 899999998765 99999999999987 44455544333211
Q ss_pred hhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe---ccCCCCCCeEEEEeccccCchHHHHHhhcchhhHHHHH
Q psy5349 97 EALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST---QPSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELR 172 (213)
Q Consensus 97 ~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~ 172 (213)
++++++++|. ++|++++.+. .|...|. +|....+ .+....+||+|++. |++++|++... .+++
T Consensus 92 -t~SvVNALS~~l~v~v~r~g~--~~~~~f~-~G~~~~~l~~i~~~~~~GT~V~F~------Pd~~iF~~~~~---~~~~ 158 (198)
T 3ttz_A 92 -TSSVVNALSQDLEVYVHRNET--IYHQAYK-KGVPQFDLKEVGTTDKTGTVIRFK------ADGEIFTETTV---YNYE 158 (198)
T ss_dssp -HTCHHHHTEEEEEEEEEETTE--EEEEEEE-TTEESSCCEEEEECSCCEEEEEEE------ECTTTCCSCCC---CCHH
T ss_pred -eeEehhhhcCeEEEEEEECCc--EEEEEEe-CCEECCCceeccCCCCCCcEEEEE------ECHHHhccCCc---cCHH
Confidence 1678889986 9999988774 4777775 5655321 12245799999997 88887755543 6788
Q ss_pred HHHHHHHHHhccCCCeEEEEEECC------EEEEEeCCC
Q psy5349 173 KVERVVKCLSLIHCKLRVTLTHNK------CVIWQKNPV 205 (213)
Q Consensus 173 ~~~~~l~~~~~~~p~i~f~l~~~~------~~~~~~~~~ 205 (213)
.+.++|+.+|..||+++|+|.+.. +..|+++++
T Consensus 159 ~l~~rlrelA~ln~gv~i~l~der~~~~~~~~~f~~~gG 197 (198)
T 3ttz_A 159 TLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGG 197 (198)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEECSSTTSCEEEEECCC--
T ss_pred HHHHHHHHHhhcCCCCEEEEEeecCCCCcceEEEEcCCC
Confidence 899999999999999999999864 356766653
No 22
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.87 E-value=5e-22 Score=161.72 Aligned_cols=169 Identities=21% Similarity=0.307 Sum_probs=113.1
Q ss_pred cccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCC------------------CeeEEEEEcCCcceEEEEeCCCCCC
Q psy5349 3 INILPQSTIRQITTSQIITSVSTAVKELIENAIDAKA------------------TSIQINLMNQGLDLIEVKDDGSGIP 64 (213)
Q Consensus 3 i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a------------------~~I~I~~~~~~~~~i~V~DnG~GI~ 64 (213)
|+.|.+...+.|.++ +..+|+|||+||+||++ ..|.|.+..+ ...|+|.|||+||+
T Consensus 18 i~~L~~ll~~~lys~-----~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~-~~~i~I~DnG~GMt 91 (236)
T 2gqp_A 18 VNRMMKLIINSLYKN-----KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE-KNLLHVTDTGVGMT 91 (236)
T ss_dssp HHHHHHHHHHHTTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT-TTEEEEEECSCCCC
T ss_pred HHHHHHHHHHhhcCC-----chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCC-CCEEEEEECCcCCC
Confidence 345555566665554 67899999999999986 2466666443 35999999999999
Q ss_pred cccHHHHHhhcccCCcCCc----ccc-----cccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe
Q psy5349 65 TQDVPLICQAATTSKITDI----TDL-----DSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST 134 (213)
Q Consensus 65 ~~~l~~~~~~~~~sk~~~~----~~~-----~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~ 134 (213)
.+++...+..+++|....+ .+. ......|.+|+|+++++.+++ |+|.|+..+. .++.|..+. |.+...
T Consensus 92 ~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~-~~~~w~~~g-g~~~i~ 169 (236)
T 2gqp_A 92 REELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDS-NEFSVI 169 (236)
T ss_dssp HHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEESS-SCEEEE
T ss_pred HHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCC-ceEEEEEeC-CEEEEE
Confidence 9999988877766622111 110 223467899999999999998 9999999875 478888765 666443
Q ss_pred ccC---CCCCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEE
Q psy5349 135 QPS---HFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTL 192 (213)
Q Consensus 135 ~~~---~~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l 192 (213)
... ...+||+|++. +. +...++ .+..+++++++.|+..-| +.+.+
T Consensus 170 ~~~~~~~~~~GT~I~l~--Lk--~~~~~~--------le~~~i~~lv~~~s~~i~-~pI~~ 217 (236)
T 2gqp_A 170 ADPRGNTLGRGTTITLV--LK--EEASDY--------LELDTIKNLVKKYSQFIN-FPIYV 217 (236)
T ss_dssp ECTTCSCSSSEEEEEEE--EC--GGGGGG--------GCHHHHHHHHHHHHTTCS-SCEEE
T ss_pred eccCCCCCCCCeEEEEE--EC--Ccchhh--------ChHHHHHHHHHHHhhhCC-CceEE
Confidence 222 35789999997 21 122223 245688899999985433 33444
No 23
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.84 E-value=2.9e-21 Score=159.59 Aligned_cols=167 Identities=22% Similarity=0.313 Sum_probs=111.8
Q ss_pred ccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCC----------------C--eeEEEEEcCCcceEEEEeCCCCCCc
Q psy5349 4 NILPQSTIRQITTSQIITSVSTAVKELIENAIDAKA----------------T--SIQINLMNQGLDLIEVKDDGSGIPT 65 (213)
Q Consensus 4 ~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a----------------~--~I~I~~~~~~~~~i~V~DnG~GI~~ 65 (213)
++|.+-.++.|.+. +..+|+|||+||+||++ . .|.|.... +...|+|.|||+||+.
T Consensus 15 ~~Ll~li~~~lYsn-----~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~-~~~~l~I~DnGiGMt~ 88 (269)
T 1qy5_A 15 NRMMKLIINSLYKN-----KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK-EKNLLHVTDTGVGMTR 88 (269)
T ss_dssp HHHHHHHHHHHTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET-TTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHhccCC-----chHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcC-CceEEEEEECCCCCCH
Confidence 33444455555444 55799999999999976 2 35555533 3349999999999999
Q ss_pred ccHHHHHhhcccCCcCCc----ccc-----cccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEec
Q psy5349 66 QDVPLICQAATTSKITDI----TDL-----DSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQ 135 (213)
Q Consensus 66 ~~l~~~~~~~~~sk~~~~----~~~-----~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~ 135 (213)
+++...+...+.|....+ ... ......|.+|+|++|++.+++ |+|.|++.+. .++.|.... |.+....
T Consensus 89 edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~-~~~~w~s~g-g~~~i~~ 166 (269)
T 1qy5_A 89 EELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDS-NEFSVIA 166 (269)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECS-SCEEEEE
T ss_pred HHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCC-cEEEEEEeC-CEEEEEe
Confidence 999877766555421110 000 223456899999999999998 9999999875 578887765 6665432
Q ss_pred c---CCCCCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHh--ccCCCeEEE
Q psy5349 136 P---SHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLS--LIHCKLRVT 191 (213)
Q Consensus 136 ~---~~~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~i~f~ 191 (213)
. ...++||+|++. +. +....|+ +..+++++++.|+ +.+| |.+.
T Consensus 167 ~~~~~~~~~GT~I~L~--Lk--~d~~e~l--------e~~~i~~lvkkys~fi~~P-I~l~ 214 (269)
T 1qy5_A 167 DPRGNTLGRGTTITLV--LK--EEASDYL--------ELDTIKNLVKKYSQFINFP-IYVW 214 (269)
T ss_dssp CTTCSCSSSEEEEEEE--EC--GGGGGGG--------SHHHHHHHHHTTCTTCSSC-EEEE
T ss_pred ccCCCcCCCCeEEEEE--Ec--ccchhhh--------hHHHHHHHHHhhhccccee-eEEe
Confidence 2 235799999997 21 1122332 3457889999999 4455 4443
No 24
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.83 E-value=1.8e-21 Score=177.58 Aligned_cols=173 Identities=23% Similarity=0.350 Sum_probs=113.8
Q ss_pred CCcccCHHHHHHHHHHchhhhC----------------CC--eeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccC
Q psy5349 17 SQIITSVSTAVKELIENAIDAK----------------AT--SIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTS 78 (213)
Q Consensus 17 ~~~i~~~~~~v~eLi~NA~DA~----------------a~--~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~s 78 (213)
..++.++..+|+|||+||+||+ +. .|.|.+..++ .+|+|.|||+||+.+++...+...++|
T Consensus 40 ~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tIA~S 118 (666)
T 2o1u_A 40 NSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGMTREELVKNLGTIAKS 118 (666)
T ss_dssp TTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHTTC----
T ss_pred HhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC-CEEEEEECCCCCCHHHHHHHHhhhccc
Confidence 3355678899999999999998 43 4666665443 599999999999999998887776666
Q ss_pred CcCCc----ccc-----cccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEeccC---CCCCCeEE
Q psy5349 79 KITDI----TDL-----DSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQPS---HFPNGTTV 145 (213)
Q Consensus 79 k~~~~----~~~-----~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~GT~V 145 (213)
....+ .+. ......|.+|+|++|++.+++ |+|.|++.+. .++.|.... |.+...... ..++||+|
T Consensus 119 Gtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~-~~~~W~s~g-g~~ti~~~~~~~~~~~GT~I 196 (666)
T 2o1u_A 119 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDS-NEFSVIADPRGNTLGRGTTI 196 (666)
T ss_dssp ---------------------------CTTGGGGGTEEEEEEEEECTTS-CCEEEEESS-SCCEEEECTTCCSSSSEEEE
T ss_pred ccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCC-ceEEEEEeC-CeEEEEecccCCCCCCCeEE
Confidence 22211 111 234567999999999999998 9999999875 578888875 666543222 34799999
Q ss_pred EEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHh--ccCCCeEE---------------EEEECCEEEEEeCCC
Q psy5349 146 SVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLS--LIHCKLRV---------------TLTHNKCVIWQKNPV 205 (213)
Q Consensus 146 ~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~i~f---------------~l~~~~~~~~~~~~~ 205 (213)
++. +. +....|+ +..+++++++.|| +.+| |.| .+.++.+++|..++.
T Consensus 197 ~L~--Lk--~d~~Efl--------e~~~I~~ivkkys~fi~~P-I~~~~~~~~~~~~~~~~~~~iN~~~~lw~~~~~ 260 (666)
T 2o1u_A 197 TLV--LK--EEASDYL--------ELDTIKNLVKKYSQFINFP-IYVWSSKTGGGGKTVWDWELMNDIKPIWQRPSK 260 (666)
T ss_dssp EEE--EC--TTTTTSS--------STTHHHHHHHHHSTTCCSC-EEEEECC-------CCEEEECSCCSCTTTSCTT
T ss_pred EEE--Ec--cchhhhc--------cHHHHHHHHHHHHhhCCCc-eEEeccccccccccccceEEEecCccccccCcc
Confidence 997 11 1122222 3457889999999 9999 877 455666777777765
No 25
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.83 E-value=2.7e-20 Score=153.68 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=107.4
Q ss_pred cccCHHHHHHHHHHchhhhCC------------------CeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCc
Q psy5349 19 IITSVSTAVKELIENAIDAKA------------------TSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKI 80 (213)
Q Consensus 19 ~i~~~~~~v~eLi~NA~DA~a------------------~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~ 80 (213)
++.+...+|+|||+||.||++ -.|.|....+. .+|+|.|||+||+.+++...+...+.|..
T Consensus 43 lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~-~tLtI~DNGiGMt~edL~~~LgtIa~Sgt 121 (281)
T 3peh_A 43 LYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEK-NILSITDTGIGMTKVDLINNLGTIAKSGT 121 (281)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHHHHHHHSCH
T ss_pred ccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCC-cEEEEEeCCCCCCHHHHHHHHHHHHhHhh
Confidence 344567899999999999974 13555554332 49999999999999998765544433321
Q ss_pred CCc----cc-ccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEecc---CCCCCCeEEEEeccc
Q psy5349 81 TDI----TD-LDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQP---SHFPNGTTVSVKNLF 151 (213)
Q Consensus 81 ~~~----~~-~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~GT~V~v~~lf 151 (213)
..+ .+ ......+|.+|+|++|++.+|+ |+|.|+..+. .++.|....+|.+..... ...++||+|++.
T Consensus 122 k~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~-~~~~Wes~g~g~fti~~~~~~~~~~~GT~I~L~--- 197 (281)
T 3peh_A 122 SNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDD-EQYIWESTADAKFTIYKDPRGATLKRGTRISLH--- 197 (281)
T ss_dssp HHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEEETTSCEEEEECTTCSTTSSEEEEEEE---
T ss_pred hhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCC-CEEEEEECCCccEEEEEcCCCCCCCCCeEEEEE---
Confidence 111 00 1234578999999999999998 9999999764 678888876776655332 245799999998
Q ss_pred cCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCC
Q psy5349 152 HNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHC 186 (213)
Q Consensus 152 ~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 186 (213)
++.......+-.+++++++.|+-.-|
T Consensus 198 ---------Lked~~e~le~~~ik~ivkkys~fi~ 223 (281)
T 3peh_A 198 ---------LKEDATNLLNDKKLMDLISKYSQFIQ 223 (281)
T ss_dssp ---------ECGGGGGGGSHHHHHHHHHHHTTTCC
T ss_pred ---------ECCchhhhcCHHHHHHHHHHhhccCC
Confidence 22222223345688899999995443
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.82 E-value=2.5e-19 Score=158.94 Aligned_cols=166 Identities=19% Similarity=0.251 Sum_probs=122.7
Q ss_pred cCHHHHHHHHHHchhhhCCC-----eeEEEEEcCC----cceEEEEeCCCCCCcccHHHHHhhc-ccCCcCCcccccccc
Q psy5349 21 TSVSTAVKELIENAIDAKAT-----SIQINLMNQG----LDLIEVKDDGSGIPTQDVPLICQAA-TTSKITDITDLDSLS 90 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~----~~~i~V~DnG~GI~~~~l~~~~~~~-~~sk~~~~~~~~~~~ 90 (213)
..+.++|.|||+||+||++. .|.|.+...+ ...|+|.|||+||+.++++.+|.+| .++|... ..
T Consensus 31 ~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~------~~ 104 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVN------RQ 104 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCC------SC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccccc------cc
Confidence 45899999999999999976 7888886532 3489999999999999999999998 4555421 23
Q ss_pred cCCCCchhhhhhhccCe------eEEEEeeCCCCceEEEEEc--c---CCeEEEeccC---CCCCCeEEEEeccccCchH
Q psy5349 91 SYGFRGEALNALCQIGE------VSVTTKTNSDPVASMYKFS--H---TGEVTSTQPS---HFPNGTTVSVKNLFHNLPV 156 (213)
Q Consensus 91 ~~G~~G~gl~s~~~~s~------v~v~s~~~~~~~~~~~~~~--~---~g~~~~~~~~---~~~~GT~V~v~~lf~~~p~ 156 (213)
..|.+|+||+++..+++ ++|.|+..+......+.+. . .|......+. ...+||+|+|. ++.+++
T Consensus 105 ~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~-l~~~~~- 182 (471)
T 1mu5_A 105 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAIS-IPGDWP- 182 (471)
T ss_dssp CSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEE-EECCHH-
T ss_pred CCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEE-EcCCcc-
Confidence 55789999999887765 9999988765445555432 1 2333332222 45689999998 222111
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCCC
Q psy5349 157 RKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPVW 206 (213)
Q Consensus 157 r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~~ 206 (213)
...+.+.++++.+++.+|+++|.+.+++...+.+.+..
T Consensus 183 ------------e~~~~I~~~l~~~al~~p~v~i~l~~~~~~~~~~~r~~ 220 (471)
T 1mu5_A 183 ------------KAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLT 220 (471)
T ss_dssp ------------HHHHHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCCC
T ss_pred ------------hHHHHHHHHHHHHHhHCCCeEEEEEECCceEEEecccc
Confidence 22357889999999999999999999888788887754
No 27
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.82 E-value=4.6e-20 Score=149.38 Aligned_cols=160 Identities=24% Similarity=0.215 Sum_probs=108.3
Q ss_pred HHHhCCCcccCHHHHHHHHHHchhhhCCC------------------eeEEEEEcCCcceEEEEeCCCCCCcccHHHHHh
Q psy5349 12 RQITTSQIITSVSTAVKELIENAIDAKAT------------------SIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQ 73 (213)
Q Consensus 12 ~~i~~~~~i~~~~~~v~eLi~NA~DA~a~------------------~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~ 73 (213)
.+|. ..++.+...+|+|||+||.||+++ .|.|....+ ...|+|.|||+||+.+++...+.
T Consensus 30 ~ll~-~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DnGiGMt~edL~~~Lg 107 (239)
T 3nmq_A 30 SLII-NTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ-ERTLTLVDTGIGMTKADLINNLG 107 (239)
T ss_dssp HHHH-HSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT-TTEEEEEECSCCCCHHHHHTHHH
T ss_pred HHHH-HhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCC-ccEEEEEeCCCCCCHHHHHHHHH
Confidence 3443 345567789999999999999753 355555433 34999999999999999854433
Q ss_pred hcccCCcCCc----ccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEecc--CCCCCCeEEE
Q psy5349 74 AATTSKITDI----TDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQP--SHFPNGTTVS 146 (213)
Q Consensus 74 ~~~~sk~~~~----~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~GT~V~ 146 (213)
..+.|....+ .........|.+|+|++|++.+|+ |+|.|++.+ ..++.|....+|.+..... ....+||+|+
T Consensus 108 tIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~-~~~~~W~s~~~g~fti~~~~~~~~~~GT~I~ 186 (239)
T 3nmq_A 108 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHND-DEQYAWESSAGGSFTVRADHGEPIGRGTKVI 186 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECSTTEEEEEECCSSCCSSEEEEE
T ss_pred HHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCC-CceeEEEECCCCcEEEEecCCCcCCCCCEEE
Confidence 2222211100 011234578999999999999998 999999865 4578888877777665432 2347999999
Q ss_pred EeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCC
Q psy5349 147 VKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHC 186 (213)
Q Consensus 147 v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 186 (213)
+. ++.......+-.+++++++.|+-.-|
T Consensus 187 L~------------lk~d~~e~l~~~~i~~lv~kys~fi~ 214 (239)
T 3nmq_A 187 LH------------LKEDQTEYLEERRVKEVVKKHSQFIG 214 (239)
T ss_dssp EE------------ECGGGGGGGSHHHHHHHHHHHCTTCS
T ss_pred EE------------ECCChHHhcCHHHHHHHHHHHHhccC
Confidence 98 22222222344578899999985443
No 28
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.81 E-value=1.8e-19 Score=161.59 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=123.4
Q ss_pred cCHHHHHHHHHHchhhhCCC-----eeEEEEEcCC----cceEEEEeCCCCCCcccHHHHHhhc-ccCCcCCcccccccc
Q psy5349 21 TSVSTAVKELIENAIDAKAT-----SIQINLMNQG----LDLIEVKDDGSGIPTQDVPLICQAA-TTSKITDITDLDSLS 90 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~----~~~i~V~DnG~GI~~~~l~~~~~~~-~~sk~~~~~~~~~~~ 90 (213)
..+.++|.|||+||+||++. .|.|.+..++ ...|+|.|||+||++++++.+|.+| .++|.. ...
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~ 103 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQ 103 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCC------CSC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcc------ccc
Confidence 35899999999999999977 7899886533 3489999999999999999999998 555542 123
Q ss_pred cCCCCchhhhhhhccCe------eEEEEeeCCCCceEEEEEc--c---CCeEEEeccC---CCCCCeEEEEeccccCchH
Q psy5349 91 SYGFRGEALNALCQIGE------VSVTTKTNSDPVASMYKFS--H---TGEVTSTQPS---HFPNGTTVSVKNLFHNLPV 156 (213)
Q Consensus 91 ~~G~~G~gl~s~~~~s~------v~v~s~~~~~~~~~~~~~~--~---~g~~~~~~~~---~~~~GT~V~v~~lf~~~p~ 156 (213)
+.|++|+||+++..+++ ++|.|+..+......+.+. . .|......+. ...+||+|++. |+.+.
T Consensus 104 ~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~-l~~~~-- 180 (530)
T 2zbk_B 104 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAIS-IPGDW-- 180 (530)
T ss_dssp CSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEE-EECCH--
T ss_pred CCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEE-eccch--
Confidence 56889999998887765 9999987765434554432 1 2333222222 24689999998 22111
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCCCc
Q psy5349 157 RKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPVWT 207 (213)
Q Consensus 157 r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~~~ 207 (213)
......+.++++.+++.||+++|+|.+++...+.+++..+
T Consensus 181 -----------~e~~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~~ 220 (530)
T 2zbk_B 181 -----------PKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTN 220 (530)
T ss_dssp -----------HHHHHHHHHHHHHHHHHCTTCCEEEECTTSCEEEECCCCC
T ss_pred -----------hhHHHHHHHHHHHHHHHCCCcEEEEEECCCeEEEecCccc
Confidence 1122578899999999999999999998888888887654
No 29
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=99.80 E-value=1.7e-19 Score=157.28 Aligned_cols=161 Identities=21% Similarity=0.215 Sum_probs=118.1
Q ss_pred cCHHHHHHHHHHchhhhC-----CCeeEEEEEcCCcceEEEEeCCCCCCcccHH--------HHH-hhcccCCcCCcccc
Q psy5349 21 TSVSTAVKELIENAIDAK-----ATSIQINLMNQGLDLIEVKDDGSGIPTQDVP--------LIC-QAATTSKITDITDL 86 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~-----a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~--------~~~-~~~~~sk~~~~~~~ 86 (213)
..|.+++.|+|+||+|+. ++.|.|+++.++ .+|+|.|||+|||.+..+ .+| ..++++|+++ .
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~-~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~---~ 138 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE-HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD---D 138 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCT---T
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECCC-CEEEEEECCCcccCcccccCCcccceEEEEEEecccccCC---C
Confidence 578999999999999975 689999998764 389999999999988743 344 4678888754 3
Q ss_pred cccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccC-CeEEEe--ccC-CCCCCeEEEEeccccCchHHHHHh
Q psy5349 87 DSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHT-GEVTST--QPS-HFPNGTTVSVKNLFHNLPVRKQYL 161 (213)
Q Consensus 87 ~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~-g~~~~~--~~~-~~~~GT~V~v~~lf~~~p~r~~~~ 161 (213)
.+..+.|.+|+|.+.++++|+ ++|++++......|...|..+ +....+ .+. ...+||+|++. |+...|
T Consensus 139 ~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~------PD~~iF- 211 (418)
T 1pvg_A 139 EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTRF- 211 (418)
T ss_dssp SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEE------ECGGGG-
T ss_pred ceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCCeecccCCCCCceEEEEE------EChHHc-
Confidence 456688999999999999998 999998632223466666533 122221 112 24689999987 777655
Q ss_pred hcchhhHHHHHH---HHHHHHHHhccCCCeEEEEEEC
Q psy5349 162 SSKNRMLEELRK---VERVVKCLSLIHCKLRVTLTHN 195 (213)
Q Consensus 162 ~~~~~~~~~~~~---~~~~l~~~~~~~p~i~f~l~~~ 195 (213)
.... .+++. +.++++.+|..+|+++|.|.+.
T Consensus 212 ~~~~---f~~d~l~~l~~RlrelA~Ln~Gl~I~l~de 245 (418)
T 1pvg_A 212 GMKE---LDNDILGVMRRRVYDINGSVRDINVYLNGK 245 (418)
T ss_dssp TCSS---CCHHHHHHHHHHHHHHHHHSTTCEEEETTE
T ss_pred CCcc---cCHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 2221 23333 6899999999999999998763
No 30
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.80 E-value=1.3e-19 Score=164.87 Aligned_cols=166 Identities=20% Similarity=0.304 Sum_probs=122.2
Q ss_pred cCHHHHHHHHHHchhhhCCC-----eeEEEEEcCC--cceEEEEeCCCCCCcccHHHHHhhcc-cCCcCCcccccccccC
Q psy5349 21 TSVSTAVKELIENAIDAKAT-----SIQINLMNQG--LDLIEVKDDGSGIPTQDVPLICQAAT-TSKITDITDLDSLSSY 92 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~--~~~i~V~DnG~GI~~~~l~~~~~~~~-~sk~~~~~~~~~~~~~ 92 (213)
..+.++|.|||+||+||+++ .|.|.+..++ ...|+|.|||+|||.++++.+|.+|+ ++++... ..+.
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~-----~~s~ 110 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHAL-----KQSR 110 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCC-----C-CC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccc-----cccC
Confidence 46899999999999999876 7888886554 23899999999999999999998874 4454331 1356
Q ss_pred CCCchhhhhhhccCe-e-----EEEEeeCCCCceEEEEE----ccC-CeE--EEeccCCCCCCeEEEEecccc-CchHHH
Q psy5349 93 GFRGEALNALCQIGE-V-----SVTTKTNSDPVASMYKF----SHT-GEV--TSTQPSHFPNGTTVSVKNLFH-NLPVRK 158 (213)
Q Consensus 93 G~~G~gl~s~~~~s~-v-----~v~s~~~~~~~~~~~~~----~~~-g~~--~~~~~~~~~~GT~V~v~~lf~-~~p~r~ 158 (213)
|++|+||+++..+++ + +|+|+..+...++.+.+ ..+ +.. ....+....+||+|++. |. +++..
T Consensus 111 Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~--f~~~~~~~- 187 (621)
T 2q2e_B 111 GQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELE--MRAAYVKG- 187 (621)
T ss_dssp SSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEE--CSCCCCCC-
T ss_pred CCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEE--ecCccchH-
Confidence 899999999988876 3 89998876556777776 222 222 12223345799999998 42 11110
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCC
Q psy5349 159 QYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPV 205 (213)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~ 205 (213)
.++.+.++++.+|+.||+++|+|.+++...|++++.
T Consensus 188 -----------~~~~I~~~L~~lAllnpgv~I~L~d~~~~~~~~~gg 223 (621)
T 2q2e_B 188 -----------RRQSIYEYLKATAIVNPHARITLIDPDGNEEVFERA 223 (621)
T ss_dssp -----------SSSSSHHHHHHHHHHCCSCEEEECCTTSCCEEEECC
T ss_pred -----------HHHHHHHHHHHHHhhCCCCEEEEEECCceEEEeCCc
Confidence 023566899999999999999999998888888884
No 31
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.3e-18 Score=156.31 Aligned_cols=166 Identities=22% Similarity=0.287 Sum_probs=115.7
Q ss_pred HHHHhCCCcccCHHHHHHHHHHchhhhCC------------------CeeEEEEEcCCcceEEEEeCCCCCCcccHHHHH
Q psy5349 11 IRQITTSQIITSVSTAVKELIENAIDAKA------------------TSIQINLMNQGLDLIEVKDDGSGIPTQDVPLIC 72 (213)
Q Consensus 11 ~~~i~~~~~i~~~~~~v~eLi~NA~DA~a------------------~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~ 72 (213)
..+|. ..++.+...+|+|||+||+||++ ..|.|.+..++ .+|+|.|||+||+.+++...+
T Consensus 16 l~li~-~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l 93 (677)
T 2cg9_A 16 MSLII-NTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ-KVLEIRDSGIGMTKAELINNL 93 (677)
T ss_dssp HHHHH-HSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG-TEEEEEECSCCCCHHHHHGGG
T ss_pred HHHHH-HhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC-CEEEEEECCCCCCHHHHHHHH
Confidence 34443 33566778999999999999984 24677665443 499999999999999998877
Q ss_pred hhcccCCcCC----cccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEecc---CCCCCCeE
Q psy5349 73 QAATTSKITD----ITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQP---SHFPNGTT 144 (213)
Q Consensus 73 ~~~~~sk~~~----~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~GT~ 144 (213)
...++|.... ..+......+|.+|+|+++++.+++ |+|.|++.+. .++.|....+|.+..... ...++||+
T Consensus 94 ~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~-~~~~W~s~g~~~~ti~~~~~~~~~~~GT~ 172 (677)
T 2cg9_A 94 GTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEVNERIGRGTI 172 (677)
T ss_dssp SSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTS-CEEEEEECSSSEEEEEECCSSCCCSSEEE
T ss_pred HhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCC-ceEEEEEcCCceEEEeecCCCCCCCCCeE
Confidence 7666662211 1111234578999999999999998 9999999874 588898876666655431 34579999
Q ss_pred EEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEE
Q psy5349 145 VSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTL 192 (213)
Q Consensus 145 V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l 192 (213)
|++. |- +....| .+..+++++++.|+-.-| +.|.+
T Consensus 173 I~L~-Lk---~d~~e~--------l~~~~i~~lvkkys~fi~-~PI~l 207 (677)
T 2cg9_A 173 LRLF-LK---DDQLEY--------LEEKRIKEVIKRHSEFVA-YPIQL 207 (677)
T ss_dssp EEEE-EC---TTGGGG--------GCHHHHHHHHHHHSTTCS-SCEEE
T ss_pred EEEE-Ec---chhhcc--------ccHHHHHHHHHHHHhhCC-CCeEE
Confidence 9998 11 112223 235578899999985443 33444
No 32
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=2.5e-18 Score=139.45 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=105.9
Q ss_pred CCcccCHHHHHHHHHHchhhhCCC------------------------------------------------------ee
Q psy5349 17 SQIITSVSTAVKELIENAIDAKAT------------------------------------------------------SI 42 (213)
Q Consensus 17 ~~~i~~~~~~v~eLi~NA~DA~a~------------------------------------------------------~I 42 (213)
..+.++....|+|||+||.||..+ .|
T Consensus 42 ~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~I 121 (272)
T 3ied_A 42 NSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKNDIKKLII 121 (272)
T ss_dssp HCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------------CGGGGCCE
T ss_pred hhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhccccccccccccccccccccccccccccccccccccCCCCCcEE
Confidence 334556788999999999997531 25
Q ss_pred EEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCc----cc-ccccccCCCCchhhhhhhccCe-eEEEEeeCC
Q psy5349 43 QINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDI----TD-LDSLSSYGFRGEALNALCQIGE-VSVTTKTNS 116 (213)
Q Consensus 43 ~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~----~~-~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~ 116 (213)
.|.+..+. .+|+|.|||+||+.+++...+...+.|....+ .+ ......+|.+|+|++|++.+|+ |+|.|+ .
T Consensus 122 ~I~~Dk~~-~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdkV~V~Sk-~- 198 (272)
T 3ied_A 122 KIKPDKEK-KTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVEVYTK-K- 198 (272)
T ss_dssp EEEEETTT-TEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEEEEEEEE-S-
T ss_pred EEEEeCCC-CEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCEEEEEEc-C-
Confidence 55554332 48999999999999999876644333321111 00 0234567999999999999998 999999 3
Q ss_pred CCceEEEEEccCCeEEEeccC--------CCCCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhcc
Q psy5349 117 DPVASMYKFSHTGEVTSTQPS--------HFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLI 184 (213)
Q Consensus 117 ~~~~~~~~~~~~g~~~~~~~~--------~~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (213)
...++.|..+.+|.+...... ..++||.|++. ++.......+-.+++++++.|+-.
T Consensus 199 dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~------------Lked~~e~le~~~ik~likkys~f 262 (272)
T 3ied_A 199 EDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILH------------LKEECDEYLEDYKLKELIKKYSEF 262 (272)
T ss_dssp SSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHCTT
T ss_pred CCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEE------------ECCChHHhcCHHHHHHHHHHHHhC
Confidence 456899988878887654322 35799999998 222222223445888999999853
No 33
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.9e-13 Score=131.88 Aligned_cols=152 Identities=20% Similarity=0.196 Sum_probs=101.5
Q ss_pred cCHHHHHHHHHHchhh---hC--CCeeEEEEEc-CCcceEEEEeCCCCCCccc--------HHHHHh-hcccCCcCCccc
Q psy5349 21 TSVSTAVKELIENAID---AK--ATSIQINLMN-QGLDLIEVKDDGSGIPTQD--------VPLICQ-AATTSKITDITD 85 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~D---A~--a~~I~I~~~~-~~~~~i~V~DnG~GI~~~~--------l~~~~~-~~~~sk~~~~~~ 85 (213)
+.+.+++.|+|+||+| || ++.|.|+++. ++ +|+|.|||+|||.+. ++.+|. .|+++|+++
T Consensus 58 ~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~--- 132 (1177)
T 4gfh_A 58 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD--- 132 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCC---
T ss_pred ceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCC---
Confidence 3689999999999999 34 4689999974 44 899999999999764 344554 577778754
Q ss_pred ccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEE----eccCCCCCCeEEEEeccccCchHHHHH
Q psy5349 86 LDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTS----TQPSHFPNGTTVSVKNLFHNLPVRKQY 160 (213)
Q Consensus 86 ~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~GT~V~v~~lf~~~p~r~~~ 160 (213)
..+..+.|.+|+|.+.++++|. ++|++........+...|..+..... .......+||+|++. |+...|
T Consensus 133 ~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~------PD~~iF 206 (1177)
T 4gfh_A 133 DEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTRF 206 (1177)
T ss_dssp SSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEE------ECHHHH
T ss_pred CCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecCCCCCCceEEEEE------eCHHhc
Confidence 3456678999999999999998 77776433222345555653333221 111234689999987 777665
Q ss_pred hhcchhhHHHHHHHHHHHHHHhccCCC
Q psy5349 161 LSSKNRMLEELRKVERVVKCLSLIHCK 187 (213)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~p~ 187 (213)
-. .. .+.+.+..+++.++..++.
T Consensus 207 ~~-~~---~~~d~l~~~~r~~~~l~~~ 229 (1177)
T 4gfh_A 207 GM-KE---LDNDILGVMRRRVYDINGS 229 (1177)
T ss_dssp TC-SS---CCHHHHHHHHHHHHHHHHH
T ss_pred CC-cE---eCHHHHHHHHHHHHHhcCC
Confidence 22 21 3344455566666555543
No 34
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.40 E-value=5e-13 Score=99.95 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHchhhhCCCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 22 SVSTAVKELIENAIDAKATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
.+.+++.|||+||++|+...|.|.+..++. ..|+|.|||.||+.++++.+|++|++.+... +..|+||+
T Consensus 44 ~l~~il~nLl~NAi~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~----------~g~GlGL~ 113 (152)
T 1id0_A 44 DFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR----------PGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC----------TTCCSCHH
T ss_pred HHHHHHHHHHHHHHHhCcCeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCCC----------CCcccCHH
Confidence 478999999999999998888888865443 4899999999999999999999988765322 35689998
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +...+ .++|.+... +..+.||+|++.
T Consensus 114 i~----------~~~~~--------~~gG~i~~~--~~~~~G~~~~i~ 141 (152)
T 1id0_A 114 VA----------REITE--------QYEGKIVAG--ESMLGGARMEVI 141 (152)
T ss_dssp HH----------HHHHH--------HTTCEEEEE--ECTTSSEEEEEE
T ss_pred HH----------HHHHH--------HcCCEEEEE--eCCCCcEEEEEE
Confidence 77 43333 246666653 233569999988
No 35
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=99.36 E-value=3.9e-13 Score=109.28 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHchhhhCCC-----eeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCC
Q psy5349 22 SVSTAVKELIENAIDAKAT-----SIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFR 95 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~ 95 (213)
.+.+++.|||+||++|... .|.|.+...+ ...|+|.|||+||++++++.+|++|++.+.... ...+..
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~------~~~~G~ 211 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT------YEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------------C
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCC------CCCCCc
Confidence 4789999999999999743 3777775433 348999999999999999999999987653211 012356
Q ss_pred chhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 96 GEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 96 G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+||+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 212 GLGL~i~----------~~iv~--------~~gG~i~v~--s~~~~Gt~f~i~ 244 (258)
T 2c2a_A 212 GLGLAIT----------KEIVE--------LHGGRIWVE--SEVGKGSRFFVW 244 (258)
T ss_dssp CCTHHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred chHHHHH----------HHHHH--------HcCCEEEEE--ecCCCCcEEEEE
Confidence 9999877 44333 356776653 234579999998
No 36
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.33 E-value=1.8e-12 Score=96.84 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHchhhhCC-CeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 22 SVSTAVKELIENAIDAKA-TSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
.+.+++.|||+||++|+. ..|.|.+...+ ...|+|.|||.||++++++.+|++|+++.... .+..|+||
T Consensus 46 ~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~---------~~g~GlGL 116 (150)
T 1ysr_A 46 GLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTAS---------HSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--------------------CCC
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCCCC---------CCCCCcCH
Confidence 478899999999999974 46777775433 34899999999999999999999998653221 13468898
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 117 ~i~----------~~~~~--------~~gG~i~~~--~~~~~G~~~~i~ 145 (150)
T 1ysr_A 117 ALV----------AQQAQ--------LHGGTASLE--NSPLGGARLVLR 145 (150)
T ss_dssp HHH----------HHHHH--------HTTCEEEEE--ECTTSSEEEEEE
T ss_pred HHH----------HHHHH--------HcCCEEEEe--ecCCCCEEEEEE
Confidence 877 33333 246666552 233569999987
No 37
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.31 E-value=7.9e-13 Score=100.10 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHchhhhCCCeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 22 SVSTAVKELIENAIDAKATSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
.+.+++.|||+||++|....|.|.+..++ ...|+|.|||.||+.++++.+|++|++++... ..+..|+||+
T Consensus 47 ~l~~il~nll~NAik~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~--------~~~g~GlGL~ 118 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR--------TISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC--------CCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCC--------CCCCcccCHH
Confidence 47899999999999999778888886433 34899999999999999999999998865432 1135688887
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +...+ .++|.+... +..+.||+|++.
T Consensus 119 i~----------~~~~~--------~~gG~i~~~--~~~~~G~~~~i~ 146 (161)
T 1bxd_A 119 IV----------QRIVD--------NHNGMLELG--TSERGGLSIRAW 146 (161)
T ss_dssp TT----------HHHHH--------HHTSEEEEE--EETTTEEEEEEE
T ss_pred HH----------HHHHH--------HcCCEEEEE--ECCCCeEEEEEE
Confidence 76 33222 235555542 222468888887
No 38
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.31 E-value=1.8e-12 Score=102.42 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=51.8
Q ss_pred HHHHHHHHHHchhhhCCC--eeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 23 VSTAVKELIENAIDAKAT--SIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~--~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
+.+++.|||+||++|... .|.|.+..+ .|+|.|||.||++++++.+|++|++++... .+..|+||+
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~~~---~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~---------~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLNAD---NFIVRDNGPGVTPEALARIGERFYRPPGQT---------ATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEECSS---EEEEECSCC-----------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEccC---eEEEEECCCCCCHHHHHHHHhhhccCCCCC---------CCcccccHH
Confidence 788999999999999854 466666443 499999999999999999999998754221 135699998
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +...+ .++|.+.. .+..+.||+|++.
T Consensus 186 i~----------~~i~~--------~~gG~i~i--~s~~~~Gt~v~~~ 213 (222)
T 3jz3_A 186 IV----------QRIAK--------LHGMNVEF--GNAEQGGFEAKVS 213 (222)
T ss_dssp HH----------HHHHH--------HTTCEEEC--CBCTTSSBEEEEE
T ss_pred HH----------HHHHH--------HcCCEEEE--EcCCCCcEEEEEe
Confidence 77 44333 35677766 3455789999998
No 39
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.30 E-value=1.3e-12 Score=113.71 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHchhhhCCC---------eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCccccccccc
Q psy5349 22 SVSTAVKELIENAIDAKAT---------SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSS 91 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~---------~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 91 (213)
.+.+++.|||+||++|... .|.|.+...+. ..|+|.|+|.||++++++.+|++|++.+.....+......
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 4789999999999998642 58888865543 3899999999999999999999999876431100011123
Q ss_pred CCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 92 YGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 92 ~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+..|+||+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 323 ~~G~GLGL~Iv----------r~i~~--------~~gG~i~v~--s~~g~Gt~f~i~ 359 (407)
T 2q8g_A 323 LAGFGYGLPIS----------RLYAQ--------YFQGDLKLY--SLEGYGTDAVIY 359 (407)
T ss_dssp SSCTTCHHHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred CCCcCCCHHHH----------HHHHH--------HhCCEEEEE--EcCCCceEEEEE
Confidence 35679999877 43333 246666552 233578888887
No 40
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.30 E-value=1.6e-12 Score=112.80 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHchhhhCCC---------eeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCccccccccc
Q psy5349 22 SVSTAVKELIENAIDAKAT---------SIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSS 91 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~---------~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 91 (213)
.+.+++.|||+||++|... .|.|.+..++.. .|+|.|+|.||++++++.+|++|++.+.....+......
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~ 309 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAP 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCC
Confidence 4789999999999998642 488888655443 899999999999999999999999876431000001122
Q ss_pred CCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 92 YGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 92 ~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+..|+||+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 310 ~~G~GLGL~i~----------~~i~~--------~~gG~i~v~--s~~g~Gt~f~i~ 346 (394)
T 2e0a_A 310 LAGFGYGLPIS----------RLYAK--------YFQGDLNLY--SLSGYGTDAIIY 346 (394)
T ss_dssp SSCSSCHHHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred CCCcccCHHHH----------HHHHH--------HhCCEEEEE--ecCCccEEEEEE
Confidence 35679999877 44333 346666653 233578988887
No 41
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.29 E-value=1.1e-12 Score=114.63 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHchhhhCCC----------eeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccc
Q psy5349 22 SVSTAVKELIENAIDAKAT----------SIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLS 90 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~----------~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~ 90 (213)
.+.+++.|||+||++|... .|.|.+..++.. .|+|.|+|.|||+++++.+|++|++.+.....+.....
T Consensus 253 ~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~ 332 (419)
T 1y8o_A 253 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAA 332 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCC
Confidence 4789999999999998743 588888655433 89999999999999999999999987643100000111
Q ss_pred cCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 91 SYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 91 ~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
..+..|+||+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 333 ~~~G~GLGL~I~----------k~iv~--------~~gG~I~v~--s~~g~Gt~f~i~ 370 (419)
T 1y8o_A 333 PLAGFGYGLPIS----------RLYAR--------YFQGDLKLY--SMEGVGTDAVIY 370 (419)
T ss_dssp CC--CTTHHHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred CcCCeecCHHHH----------HHHHH--------HhCCEEEEE--ecCCCCEEEEEE
Confidence 234679999877 43333 346666652 233578999887
No 42
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.26 E-value=1.9e-12 Score=112.01 Aligned_cols=108 Identities=20% Similarity=0.249 Sum_probs=73.8
Q ss_pred cCHHHHHHHHHHchhhhCCC----------eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCccc----
Q psy5349 21 TSVSTAVKELIENAIDAKAT----------SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITD---- 85 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~----------~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~---- 85 (213)
..+.+++.|||.||++|... .|.|.+...+. ..|+|.|+|.||++++++.+|++|++++......
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~ 316 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRIS 316 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccc
Confidence 34789999999999998632 68888865443 3899999999999999999999999876532100
Q ss_pred ----------ccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 86 ----------LDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 86 ----------~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.......+..|+||+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~G~GLGL~i~----------r~i~~--------~~gG~i~v~--s~~g~Gt~f~i~ 369 (388)
T 1gkz_A 317 PLFGHLDMHSGGQSGPMHGFGFGLPTS----------RAYAE--------YLGGSLQLQ--SLQGIGTDVYLR 369 (388)
T ss_dssp ---------------CCSCSSCHHHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred cchhhcccccccCCCCcCCccCCHHHH----------HHHHH--------HhCCEEEEE--ecCCCcEEEEEE
Confidence 00112235679999877 43333 246666552 234578888887
No 43
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.24 E-value=2.9e-12 Score=111.07 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHchhhhCCC---------eeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCccccccccc
Q psy5349 22 SVSTAVKELIENAIDAKAT---------SIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSS 91 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~---------~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 91 (213)
.+.+++.|||+||++|... .|.|.+..++.. .|+|.|+|.||++++++.+|++|++.+.....+ .....
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~-~~~~~ 309 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPG-TGGTP 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC-----------
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcc-cCCCC
Confidence 4789999999999998632 488888655443 899999999999999999999999876431000 01112
Q ss_pred CCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 92 YGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 92 ~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+..|+||+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 310 ~~G~GLGL~i~----------~~i~~--------~~gG~i~v~--s~~g~Gt~f~i~ 346 (394)
T 2btz_A 310 LAGFGYGLPIS----------RLYAK--------YFQGDLQLF--SMEGFGTDAVIY 346 (394)
T ss_dssp ----CCHHHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred CCCccCCHHHH----------HHHHH--------HhCCEEEEE--ecCCCceEEEEE
Confidence 34679999877 33333 246666552 223568888876
No 44
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.23 E-value=1e-11 Score=101.12 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHchhhhCC--CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKA--TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a--~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.|||+||++|.. ..|.|.+..++. ..|+|.|||.||+++.++.+|++|++++. +..|+|
T Consensus 155 ~l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~------------~g~GlG 222 (268)
T 4ew8_A 155 RLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR------------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS------------CCCTTH
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC------------CCCccc
Confidence 378999999999999975 478888865443 38999999999999999999999986543 246999
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 223 L~i~----------~~~~~--------~~gG~i~i~--s~~~~Gt~~~i~ 252 (268)
T 4ew8_A 223 LALV----------KALVE--------LHGGWVALE--SEPGNGSTFTCH 252 (268)
T ss_dssp HHHH----------HHHHH--------HTTCEEEEE--ECTTSCEEEEEE
T ss_pred HHHH----------HHHHH--------HcCCEEEEE--ecCCCCEEEEEE
Confidence 9877 43333 246666653 334679999998
No 45
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.23 E-value=2.6e-12 Score=99.79 Aligned_cols=99 Identities=24% Similarity=0.395 Sum_probs=68.0
Q ss_pred HHHHHHHHHHchhhhC--------------CCeeEEEEEcCC-cceEEEEeCCCCCCcccH-------------------
Q psy5349 23 VSTAVKELIENAIDAK--------------ATSIQINLMNQG-LDLIEVKDDGSGIPTQDV------------------- 68 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~--------------a~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l------------------- 68 (213)
+.+++.|||+||++|+ ...|.|.+..++ ...|+|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 127 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccc
Confidence 4556999999999996 346888775433 348999999999999987
Q ss_pred -----HHHHhhcccCCcCCcccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCe
Q psy5349 69 -----PLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGT 143 (213)
Q Consensus 69 -----~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT 143 (213)
+.+|++|++++.... ..+..|+||+.+ +...+ .++|.+... +..+.||
T Consensus 128 ~~~~~~~if~~~~~~~~~~~-------~~~g~GlGL~iv----------~~~~~--------~~~G~i~i~--s~~~~Gt 180 (189)
T 1i58_A 128 DQEILNFLFVPGFSTKEKVS-------EVSGRGVGMDVV----------KNVVE--------SLNGSISIE--SEKDKGT 180 (189)
T ss_dssp HHHHHGGGGSTTCSHHHHHH-------GGGTCCCHHHHH----------HHHHH--------HTTCEEEEE--EETTTEE
T ss_pred hhhhHHHhcCCcccccccCC-------CCCCCccCHHHH----------HHHHH--------HcCCEEEEE--eCCCCce
Confidence 778888777543210 113569999877 33322 245665542 2235789
Q ss_pred EEEEe
Q psy5349 144 TVSVK 148 (213)
Q Consensus 144 ~V~v~ 148 (213)
+|++.
T Consensus 181 ~~~i~ 185 (189)
T 1i58_A 181 KVTIR 185 (189)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99887
No 46
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.22 E-value=7.8e-12 Score=100.07 Aligned_cols=96 Identities=23% Similarity=0.308 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHchhhhCC--CeeEEEEEcC-CcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKA--TSIQINLMNQ-GLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a--~~I~I~~~~~-~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.|||.||++|.. ..|.|.+..+ +...|+|.|||.||++++++.+|++|++++.. +..|+|
T Consensus 123 ~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~-----------~g~GlG 191 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV-----------KGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG-----------GCCSCH
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCCC-----------CCcchh
Confidence 478899999999999974 4677777543 33489999999999999999999999876521 246999
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 192 L~i~----------~~i~~--------~~gG~i~~~--~~~~~G~~~~i~ 221 (244)
T 3d36_A 192 MMVV----------YRIIE--------SMNGTIRIE--SEIHKGTTVSIY 221 (244)
T ss_dssp HHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred HHHH----------HHHHH--------HcCCEEEEE--ecCCCcEEEEEE
Confidence 9877 33333 246666552 223578999988
No 47
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.18 E-value=2.2e-11 Score=93.59 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEE--EcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCc
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINL--MNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRG 96 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~--~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 96 (213)
.+.+++.|||+||++|... .|.|.+ ...+. ..|+|.|||.||+.+.++.+|++|++...... ...+..|
T Consensus 43 ~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~------~~~~g~G 116 (177)
T 3sl2_A 43 KITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKART------RKLGGTG 116 (177)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCC------CCCCCCC
Confidence 3788999999999999743 455555 44333 38999999999999999999999987543211 1224579
Q ss_pred hhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 97 EALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 97 ~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+||+.+ +...+ ..+|.+... +..+.||+|++.
T Consensus 117 lGL~iv----------~~~~~--------~~~G~i~i~--~~~~~Gt~~~i~ 148 (177)
T 3sl2_A 117 LGLAIA----------KEMVQ--------AHGGDIWAD--SIEGKGTTITFT 148 (177)
T ss_dssp CHHHHH----------HHHHH--------HTTCCEEEE--EETTTEEEEEEE
T ss_pred cCHHHH----------HHHHH--------HcCCEEEEE--ecCCCCeEEEEE
Confidence 999877 33222 235555542 223568998887
No 48
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.17 E-value=1e-11 Score=107.40 Aligned_cols=73 Identities=25% Similarity=0.409 Sum_probs=50.2
Q ss_pred HHHHHHHHHHchhhhC------------C--CeeEEEEEcCCc-ceEEEEeCCCCCCcccH-------------------
Q psy5349 23 VSTAVKELIENAIDAK------------A--TSIQINLMNQGL-DLIEVKDDGSGIPTQDV------------------- 68 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~------------a--~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l------------------- 68 (213)
+.+++.|||.||+||+ . ..|.|.+...+. ..|+|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~ 186 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 186 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCC
Confidence 4556999999999997 2 357777764433 48999999999999987
Q ss_pred -----HHHHhhcccCCcCCcccccccccCCCCchhhhhh
Q psy5349 69 -----PLICQAATTSKITDITDLDSLSSYGFRGEALNAL 102 (213)
Q Consensus 69 -----~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~ 102 (213)
+.+|++|++++... ...+.+|+||+.+
T Consensus 187 ~~~~~~~iF~p~fst~~~~-------~~~~G~GlGL~iv 218 (379)
T 1b3q_A 187 DQEILNFLFVPGFSTKEKV-------SEVSGRGVGMDVV 218 (379)
T ss_dssp THHHHSGGGSTTCC------------------CCCSHHH
T ss_pred HHHHHHHhcCCCCccCCcc-------CCCCCccccHHHH
Confidence 77899987765432 1224679998876
No 49
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.17 E-value=1.8e-11 Score=91.20 Aligned_cols=95 Identities=21% Similarity=0.245 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHchhhhC--CCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAK--ATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~--a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.||++||++|. ...|.|.+...+. ..|+|.|||.||+.++++.+|++|++++. +..|+|
T Consensus 47 ~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~------------~g~GlG 114 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------------QGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------------CCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC------------CCCCcC
Confidence 47889999999999987 3578888765443 48999999999999999999999987642 246899
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+. .++|.+..... +.||+|++.
T Consensus 115 L~i~----------~~~~~~-------~~gg~~~~~~~---~~g~~~~i~ 144 (152)
T 3a0y_A 115 LSIC----------RKIIED-------EHGGKIWTENR---ENGVVFIFE 144 (152)
T ss_dssp HHHH----------HHHHHT-------TTSCEEEEEEE---TTEEEEEEE
T ss_pred HHHH----------HHHHHH-------hCCcEEEEecC---CCCEEEEEE
Confidence 8877 332220 13455544222 258999887
No 50
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.13 E-value=1.3e-11 Score=92.63 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHchhhhC---CCeeEEEEEcCC-----------cceEEEEeCCCCCCcccHHHHHhhcccCCcCCccccc
Q psy5349 22 SVSTAVKELIENAIDAK---ATSIQINLMNQG-----------LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLD 87 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~---a~~I~I~~~~~~-----------~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~ 87 (213)
.+.+++.|||+||++|. ...|.|.+...+ ...|+|.|||.||++++++.+|++|++++.
T Consensus 48 ~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~------- 120 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE------- 120 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------
Confidence 47899999999999986 446777775332 238999999999999999999999987653
Q ss_pred ccccCCCCchhhhhh
Q psy5349 88 SLSSYGFRGEALNAL 102 (213)
Q Consensus 88 ~~~~~G~~G~gl~s~ 102 (213)
+..|+||+.+
T Consensus 121 -----~g~GlGL~i~ 130 (160)
T 1r62_A 121 -----GGTGLGLSIA 130 (160)
T ss_dssp --------CHHHHHH
T ss_pred -----CCCccCHHHH
Confidence 2469999877
No 51
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.12 E-value=8.7e-11 Score=85.74 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHchhhhC-CCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 22 SVSTAVKELIENAIDAK-ATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~-a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
.+.+++.||++||++|+ +..|.|.+..++. ..|+|.|||+||+++++ +..|+||
T Consensus 40 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~g~GlGL 95 (128)
T 3ehg_A 40 ILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS------------------------FSKGHGL 95 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCSCSSC------------------------CCTTSHH
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCEEEEEEEECCcCcCcccC------------------------CCCCccH
Confidence 35679999999999986 5678888864433 48999999999998765 1358999
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+ +...+ .++|.+... +. . ||+|++.
T Consensus 96 ~~~----------~~~~~--------~~gG~i~~~--s~-~-Gt~~~i~ 122 (128)
T 3ehg_A 96 LGM----------RERLE--------FANGSLHID--TE-N-GTKLTMA 122 (128)
T ss_dssp HHH----------HHHHH--------HTTCEEEEE--CS-S-SEEEEEE
T ss_pred HHH----------HHHHH--------HcCCEEEEE--eC-C-CEEEEEE
Confidence 877 33333 246776653 22 2 9999998
No 52
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.11 E-value=1.8e-11 Score=102.90 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHchhhhCC--CeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchh
Q psy5349 22 SVSTAVKELIENAIDAKA--TSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEA 98 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a--~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 98 (213)
.+.+++.|||.||++|.. ..|.|.+...+ ...|+|.|||+|||++.++.+|++|+++|.. ..|+|
T Consensus 244 ~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~------------g~GlG 311 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ------------GTGLG 311 (349)
T ss_dssp HHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------------CC
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCCCC------------Cccch
Confidence 478899999999999973 56888876433 3489999999999999999999999887532 46888
Q ss_pred hhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 99 LNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 99 l~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+.+ +...+. .++|.+.... . +.||+|++.
T Consensus 312 L~i~----------~~~v~~-------~~gg~i~~~~--~-~~Gt~f~i~ 341 (349)
T 3a0r_A 312 LSIC----------RKIIED-------EHGGKIWTEN--R-ENGVVFIFE 341 (349)
T ss_dssp CTHH----------HHHHHH-------TTCSBCCEEE--C-SSEEEEEEE
T ss_pred HHHH----------HHHHHH-------hCCCEEEEEe--C-CCcEEEEEE
Confidence 8877 332220 1356665532 2 359999998
No 53
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.10 E-value=2.8e-10 Score=84.66 Aligned_cols=73 Identities=27% Similarity=0.355 Sum_probs=52.9
Q ss_pred cCHHHHHHHHHHchhhhCC-----CeeEEEEEcC-CcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCC
Q psy5349 21 TSVSTAVKELIENAIDAKA-----TSIQINLMNQ-GLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGF 94 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a-----~~I~I~~~~~-~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 94 (213)
..+..++.||++||++++. ..|.|.+... +...|+|.|||.||+ +++.+|++|++++... +.
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~~----------~~ 105 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPEL----------ER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCCCC----------CC
Confidence 3578899999999999873 5688877543 334899999999999 8999999988765411 24
Q ss_pred Cchhhhhhhcc
Q psy5349 95 RGEALNALCQI 105 (213)
Q Consensus 95 ~G~gl~s~~~~ 105 (213)
.|+||+.+..+
T Consensus 106 ~GlGL~iv~~~ 116 (145)
T 1th8_A 106 SGMGFTIMENF 116 (145)
T ss_dssp CSCHHHHHHHH
T ss_pred CcchHHHHHHH
Confidence 69999888444
No 54
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.03 E-value=1e-10 Score=95.06 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHchhhhCCC--eeEEEEEcC-CcceEEEEeCCCCC--CcccHHHHHhhcccCCcCCcccccccccCCCCc
Q psy5349 22 SVSTAVKELIENAIDAKAT--SIQINLMNQ-GLDLIEVKDDGSGI--PTQDVPLICQAATTSKITDITDLDSLSSYGFRG 96 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~--~I~I~~~~~-~~~~i~V~DnG~GI--~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 96 (213)
.+.+++.||+.||++|... .|.|.+... +...|+|.|+|.|| +++.++.+|.+|.+++. +..|
T Consensus 146 ~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~------------~G~G 213 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGL------------GGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSC------------HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCC------------CCcc
Confidence 4678999999999999754 688877543 33489999999885 45556666666655432 2358
Q ss_pred hhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 97 EALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 97 ~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+||+.+ +...+ .++|.+.... . +.||+|+++
T Consensus 214 LGLai~----------~~iv~--------~hGG~i~v~s--~-~~G~~f~v~ 244 (247)
T 4fpp_A 214 VQAAYL----------NALVR--------AAGGQIAVEI--G-EDRASIAAW 244 (247)
T ss_dssp HHHHHH----------HHHHH--------HTTCEEEEEE--E-TTEEEEEEE
T ss_pred HHHHHH----------HHHHH--------HcCCEEEEEE--c-CCEEEEEEE
Confidence 999877 44444 4678877642 2 349999987
No 55
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.02 E-value=3.5e-10 Score=89.23 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=54.6
Q ss_pred HHHHHHHHHHchhhhC-CCeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 23 VSTAVKELIENAIDAK-ATSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~-a~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
+..++.||+.||++|+ +..|.|.+..++. ..|+|.|||+||+++.. +..|+||+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~g~GlGL~ 186 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS------------------------FSKGHGLL 186 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCC--------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC------------------------CCCCCCHH
Confidence 5679999999999986 4578888864433 48999999999998865 13589998
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +...+ .++|.+... +. + ||+|++.
T Consensus 187 ~~----------~~~v~--------~~gG~i~~~--s~-~-Gt~~~i~ 212 (218)
T 3ehh_A 187 GM----------RERLE--------FANGSLHID--TE-N-GTKLTMA 212 (218)
T ss_dssp HH----------HHHHH--------HTTCEEEEE--CS-S-SEEEEEE
T ss_pred HH----------HHHHH--------HcCCEEEEe--CC-C-CeEEEEE
Confidence 77 44333 357777663 22 2 9999998
No 56
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=98.99 E-value=6.8e-10 Score=80.57 Aligned_cols=80 Identities=26% Similarity=0.404 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHchhhhC-CCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 22 SVSTAVKELIENAIDAK-ATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
.+.+++.||+.||++|+ +..|.|.+..++...|+|.|||.||+++. .|+||+
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~~~~~~i~v~D~G~gi~~~~---------------------------~GlGL~ 95 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKVDDDLCIEVTDNGRGMPDEF---------------------------TGSGLT 95 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEESSEEEEEEEECCCCCTTTT---------------------------CSHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEEcCCEEEEEecCCCCCCccc---------------------------CCcCHH
Confidence 47789999999999988 56788888643326899999999999764 388998
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCC-CCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFP-NGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~GT~V~v~ 148 (213)
.+ +...+ .++|.+... +..+ .||+|++.
T Consensus 96 i~----------~~~~~--------~~gG~i~~~--~~~~~~G~~~~i~ 124 (129)
T 3zxo_A 96 NL----------RQRAE--------QAGGEFTLA--SMPGASGTVLRWS 124 (129)
T ss_dssp HH----------HHHHH--------HTTCEEEEE--ECTTTCCEEEEEE
T ss_pred HH----------HHHHH--------HcCCEEEEe--eCCCCCcEEEEEE
Confidence 77 33333 245666552 2234 69999987
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.95 E-value=6.5e-10 Score=80.20 Aligned_cols=79 Identities=28% Similarity=0.373 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHchhhhCC-CeeEEEEEc-CCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 22 SVSTAVKELIENAIDAKA-TSIQINLMN-QGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-~~I~I~~~~-~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
.+.+++.||+.||++|+. ..|.|.+.. ++ ..|+|.|||.||+++. .|+||
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~---------------------------~GlGL 90 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSVEDD-VRVEVVDDGVGISGDI---------------------------TESGL 90 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEEEEE-EEEEEEECCCSSCGGG---------------------------SHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEeCCC-EEEEEEECCCCCCccc---------------------------cccCH
Confidence 366899999999999874 478877753 23 6899999999999864 28898
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+ +...+ .++|.+... +..+.||+|++.
T Consensus 91 ~~~----------~~~~~--------~~gG~i~~~--~~~~~G~~~~i~ 119 (124)
T 3zxq_A 91 RNL----------RQRAD--------DAGGEFTVE--NMPTGGTLLRWS 119 (124)
T ss_dssp HHH----------HHHHH--------HHTCEEEEE--ECTTSSEEEEEE
T ss_pred HHH----------HHHHH--------HhCCEEEEE--EcCCCcEEEEEE
Confidence 877 33332 246666552 233569999987
No 58
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=97.74 E-value=5.3e-05 Score=65.56 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=44.0
Q ss_pred ccCHHHHHHHHHHchhhhC-----CCeeEEEEEcC--CcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccC
Q psy5349 20 ITSVSTAVKELIENAIDAK-----ATSIQINLMNQ--GLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSY 92 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~DA~-----a~~I~I~~~~~--~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~ 92 (213)
...+..++.||+.||++++ ...|.|++... +...|+|.|+|.|+|+. .. .
T Consensus 295 ~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~----------~~-------------~ 351 (399)
T 3ke6_A 295 IADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR----------DG-------------A 351 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC----------CC-------------C
Confidence 4567889999999999997 45788887643 33489999999999975 00 0
Q ss_pred CCCchhhhhhhccCe-eEEE
Q psy5349 93 GFRGEALNALCQIGE-VSVT 111 (213)
Q Consensus 93 G~~G~gl~s~~~~s~-v~v~ 111 (213)
+..|.||..+..+++ +.+.
T Consensus 352 ~~~G~GL~lv~~l~~~~~~~ 371 (399)
T 3ke6_A 352 RGRGRGLAMAEALVSEARIM 371 (399)
T ss_dssp -----CHHHHHTTSSEEEEE
T ss_pred CCCCcHHHHHHHHHHheeeE
Confidence 235888888866655 4443
No 59
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=96.97 E-value=0.00062 Score=53.08 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=35.0
Q ss_pred HHHHHHHHchhhhC--------CCeeEEEEEcC--Cc-ceEEEEeCCCCCCcccHHHHHhhc
Q psy5349 25 TAVKELIENAIDAK--------ATSIQINLMNQ--GL-DLIEVKDDGSGIPTQDVPLICQAA 75 (213)
Q Consensus 25 ~~v~eLi~NA~DA~--------a~~I~I~~~~~--~~-~~i~V~DnG~GI~~~~l~~~~~~~ 75 (213)
..+.+|++||++|- ...|.|.+..+ +. ..|+|.|+|+||+.+.++.+|+..
T Consensus 108 ~~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~ 169 (192)
T 1ixm_A 108 QKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNG 169 (192)
T ss_dssp HHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC------
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCC
Confidence 44577888877763 34688888764 33 499999999999999988888644
No 60
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=60.69 E-value=7.7 Score=34.89 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=33.8
Q ss_pred HHHHHHHHHHchh---hhC-CCeeEEEEE--cCCcceEEEEeCCC---CCCcccH
Q psy5349 23 VSTAVKELIENAI---DAK-ATSIQINLM--NQGLDLIEVKDDGS---GIPTQDV 68 (213)
Q Consensus 23 ~~~~v~eLi~NA~---DA~-a~~I~I~~~--~~~~~~i~V~DnG~---GI~~~~l 68 (213)
|..|++|+|-||+ |+. ...|.|.+. ++ .|+|..-|. |++.+++
T Consensus 297 P~~aiREal~NAl~HrDY~~~~~i~i~i~~~~d---riei~npG~l~~~~t~e~~ 348 (583)
T 3lmm_A 297 PRLAVREAMLNAMIHRDWNRSEPIDVRWIELDS---TLIVRSPGGFPAAITSENV 348 (583)
T ss_dssp CHHHHHHHHHHHHHHSCSSSSSCEEEEEETTTT---EEEEEEESCCCTTCCTTSS
T ss_pred CHHHHHHHHHHHHhccccCCCCCEEEEEEecCC---EEEEEcCCCCCCCCCHHHh
Confidence 6899999999999 444 346888887 55 899999995 6776665
No 61
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=36.61 E-value=47 Score=21.61 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=13.8
Q ss_pred hhhCCCeeEEEEEcCCcceEEEEeCCCC
Q psy5349 35 IDAKATSIQINLMNQGLDLIEVKDDGSG 62 (213)
Q Consensus 35 ~DA~a~~I~I~~~~~~~~~i~V~DnG~G 62 (213)
.||+...+.|.+..-....+.|.|++.|
T Consensus 29 ~dag~~~~~v~v~gp~~~~~~v~d~~dG 56 (94)
T 2w0p_A 29 REAGAGGLAIAVEGPSKAEISFEDRKDG 56 (94)
T ss_dssp GGGCSCCEEEEEEESSCCEEEEEECTTS
T ss_pred cCCCCCcEEEEEECCCCCeEEEEECCCC
Confidence 3455555555553211125566666654
No 62
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=34.79 E-value=45 Score=22.12 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=16.0
Q ss_pred hhhCCCeeEEEEE-cCCc-ceEEEEeCCCC
Q psy5349 35 IDAKATSIQINLM-NQGL-DLIEVKDDGSG 62 (213)
Q Consensus 35 ~DA~a~~I~I~~~-~~~~-~~i~V~DnG~G 62 (213)
-||+...+.|.+. +++. ..++|.|||.|
T Consensus 34 ~~aG~~~l~v~i~~~~g~~~~~~v~d~~dG 63 (100)
T 3rgh_A 34 SSAGSAELTIEICSEAGLPAEVYIQDHGDG 63 (100)
T ss_dssp TTSCSCCEEEEEECTTSCBCEEEEEECSSS
T ss_pred CCCCCceEEEEEECCCCCEeEEEEEeCCCC
Confidence 3566666666664 2232 25677777765
No 63
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=32.57 E-value=19 Score=18.21 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=10.6
Q ss_pred HHHHHHHHHchhh
Q psy5349 24 STAVKELIENAID 36 (213)
Q Consensus 24 ~~~v~eLi~NA~D 36 (213)
..-+.||++|.++
T Consensus 11 ekqieelldncie 23 (31)
T 4h62_V 11 EKQIEELLDNCIE 23 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4568899999986
No 64
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=30.01 E-value=53 Score=21.49 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=11.3
Q ss_pred hhCCCeeEEEEEcCCcceEEEEeCCCC
Q psy5349 36 DAKATSIQINLMNQGLDLIEVKDDGSG 62 (213)
Q Consensus 36 DA~a~~I~I~~~~~~~~~i~V~DnG~G 62 (213)
||+...+.|.+..-....+.|.|++.|
T Consensus 33 dag~~~l~v~v~~p~~~~~~v~d~~dG 59 (97)
T 2bp3_A 33 DAGEGGLSLAIEGPSKAEISCTDNQDG 59 (97)
T ss_dssp TCCSEEEEEEEEESSCCEEEEEECSSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCC
Confidence 344444444443111124455555544
No 65
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=27.42 E-value=59 Score=21.97 Aligned_cols=27 Identities=11% Similarity=0.404 Sum_probs=14.6
Q ss_pred hhCCCeeEEEEEc-CCcc-eEEEEeCCCC
Q psy5349 36 DAKATSIQINLMN-QGLD-LIEVKDDGSG 62 (213)
Q Consensus 36 DA~a~~I~I~~~~-~~~~-~i~V~DnG~G 62 (213)
||+...+.|.+.. ++.. .++|.|||.|
T Consensus 38 daG~~~l~v~i~~~~g~~~~~~v~d~~dG 66 (113)
T 2dia_A 38 EAGPGALGLEAVSDSGTKAEVSIQNNKDG 66 (113)
T ss_dssp SCCSCCEEEEEEETTTEECEEEEEECTTS
T ss_pred CCCCccEEEEEECCCCCEeeEEEEECCCC
Confidence 4555566666632 2222 5666777655
No 66
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.75 E-value=48 Score=22.12 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=11.4
Q ss_pred hhCCCeeEEEEEcCCcceEEEEeCCCC
Q psy5349 36 DAKATSIQINLMNQGLDLIEVKDDGSG 62 (213)
Q Consensus 36 DA~a~~I~I~~~~~~~~~i~V~DnG~G 62 (213)
||+...+.|.+..-....++|.|++.|
T Consensus 38 dag~~~l~v~v~~p~~~~v~v~d~~dG 64 (105)
T 2ee6_A 38 EAGAGGLSIAVEGPSKAEITFDDHKNG 64 (105)
T ss_dssp SSCCCCEEEEEESSSCEEEEECCCCSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCC
Confidence 344444555553211113455555544
No 67
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=26.31 E-value=35 Score=21.74 Aligned_cols=35 Identities=9% Similarity=0.240 Sum_probs=28.7
Q ss_pred cccCCHHHHHHHhC--CCcccCHHHHHHHHHHchhhh
Q psy5349 3 INILPQSTIRQITT--SQIITSVSTAVKELIENAIDA 37 (213)
Q Consensus 3 i~~l~~~~~~~i~~--~~~i~~~~~~v~eLi~NA~DA 37 (213)
|+.+|+++...|.. ...-.|+..-+++++++....
T Consensus 6 IRnvpdev~~~L~~rAa~~G~S~~~ylr~~Le~~a~~ 42 (73)
T 3h87_C 6 IRDIPDDVLASLDAIAARLGLSRTEYIRRRLAQDAQT 42 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTS
T ss_pred ecCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 89999999998865 445578999999999887653
No 68
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.78 E-value=53 Score=22.87 Aligned_cols=29 Identities=7% Similarity=0.200 Sum_probs=12.2
Q ss_pred hhhhCCCeeEEEEEcCCcceEEEEeCCCC
Q psy5349 34 AIDAKATSIQINLMNQGLDLIEVKDDGSG 62 (213)
Q Consensus 34 A~DA~a~~I~I~~~~~~~~~i~V~DnG~G 62 (213)
+.||+...+.+.+..-....+.+.|++.|
T Consensus 46 t~daG~~~l~v~i~gp~~~~~~~~d~~dG 74 (125)
T 2eec_A 46 TTRAGPGTLSVTIEGPSKVKMDCQETPEG 74 (125)
T ss_dssp CTTTCSCCEEEEEESSSCCCCEEEECSSS
T ss_pred EcCCCCCcEEEEEECCCCCcceeEECCCC
Confidence 34455555555553111113444555533
No 69
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Probab=25.17 E-value=74 Score=20.65 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=12.2
Q ss_pred hhCCCeeEEEEEc-CCc-ceEEEEeCCCC
Q psy5349 36 DAKATSIQINLMN-QGL-DLIEVKDDGSG 62 (213)
Q Consensus 36 DA~a~~I~I~~~~-~~~-~~i~V~DnG~G 62 (213)
||+...+.+.+.. .+. ..++|.|+|.|
T Consensus 33 ~aG~~~l~v~v~~p~~~~~~~~v~d~~dG 61 (96)
T 1v05_A 33 KAGTNMMMVGVHGPKTPCEEVYVKHMGNR 61 (96)
T ss_dssp TSBSCCEEEEEECSSSCCSEEEEEECSTT
T ss_pred CCCCCcEEEEEECCCCCeeEEEEEeCCCC
Confidence 4444455555532 111 14555565544
No 70
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=24.92 E-value=32 Score=22.42 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=17.8
Q ss_pred eEEEEeCCCCCCcccH-HHHHhhcc
Q psy5349 53 LIEVKDDGSGIPTQDV-PLICQAAT 76 (213)
Q Consensus 53 ~i~V~DnG~GI~~~~l-~~~~~~~~ 76 (213)
+-.|.+||.||.+.+- -.+|..|.
T Consensus 54 sAiiT~dGiGInP~QtAGnvFlKhG 78 (92)
T 1j0g_A 54 SAIITNDGIGINPAQTAGNVFLKHG 78 (92)
T ss_dssp EEEECTTSCCCCCSSBHHHHHHHTC
T ss_pred eEEEecCCcccChhhccchhhhhcC
Confidence 5789999999998763 35665553
No 71
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=24.21 E-value=34 Score=21.97 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=29.2
Q ss_pred ccccCCHHHHHHHhC--CCcccCHHHHHHHHHHchhh
Q psy5349 2 SINILPQSTIRQITT--SQIITSVSTAVKELIENAID 36 (213)
Q Consensus 2 ~i~~l~~~~~~~i~~--~~~i~~~~~~v~eLi~NA~D 36 (213)
-|+.||+++...++. ...-.|+..-+++++.+++.
T Consensus 4 tIRnlpd~~~~~Lk~rAa~~GrSle~e~r~iL~~a~~ 40 (77)
T 2bsq_E 4 VIRNLSEATHNAIKFRARAAGRSTEAEIRLILDNIAK 40 (77)
T ss_dssp EECSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 478999998887764 55668999999999999985
No 72
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=23.52 E-value=62 Score=22.13 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=2.8
Q ss_pred EEEEeCC
Q psy5349 54 IEVKDDG 60 (213)
Q Consensus 54 i~V~DnG 60 (213)
++|.|++
T Consensus 63 ~~v~d~~ 69 (119)
T 2k9u_A 63 IAFEDRK 69 (119)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 3344443
No 73
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=23.13 E-value=67 Score=20.52 Aligned_cols=28 Identities=21% Similarity=0.187 Sum_probs=14.3
Q ss_pred hhhCCCeeEEEEEc-CCc-ceEEEEeCCCC
Q psy5349 35 IDAKATSIQINLMN-QGL-DLIEVKDDGSG 62 (213)
Q Consensus 35 ~DA~a~~I~I~~~~-~~~-~~i~V~DnG~G 62 (213)
-||+...+.|.+.. .+. ..++|.|+|.|
T Consensus 25 ~~aG~~~l~v~v~~p~g~~~~~~v~d~~dG 54 (89)
T 3cnk_A 25 SKAGNNMLLVGVHGPRTPCEEILVKHVGSR 54 (89)
T ss_dssp TTSCSCCEEEEEECSSSCCSEEEEEEEETT
T ss_pred CcCCCCcEEEEEECCCCCceeEEEEECCCC
Confidence 34555556665542 221 25566666654
No 74
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=23.04 E-value=6.2 Score=20.02 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=7.5
Q ss_pred eEEEEeCCC
Q psy5349 53 LIEVKDDGS 61 (213)
Q Consensus 53 ~i~V~DnG~ 61 (213)
.|+|.|||+
T Consensus 8 titiedngr 16 (31)
T 2ab9_A 8 TITIEDNGR 16 (31)
T ss_dssp CSSSCCCSS
T ss_pred EEEEecCCe
Confidence 678899996
No 75
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=21.87 E-value=66 Score=22.30 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=12.0
Q ss_pred hhCCCeeEEEEEc-CCcc-eEEEEeCCCC
Q psy5349 36 DAKATSIQINLMN-QGLD-LIEVKDDGSG 62 (213)
Q Consensus 36 DA~a~~I~I~~~~-~~~~-~i~V~DnG~G 62 (213)
||+...+.|.+.. ++.. .+.|.||+.|
T Consensus 39 daG~~~l~V~I~~p~g~~v~~~v~d~~dG 67 (124)
T 2dmb_A 39 TAGKGKVTCTVLTPDGTEAEADVIENEDG 67 (124)
T ss_dssp SSCSCCEEEEEECTTSCBCCCEEEECTTS
T ss_pred cCCCCcEEEEEECCCCCEEeeEEEeCCCC
Confidence 4444455555531 2211 3455555544
No 76
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=21.20 E-value=89 Score=21.76 Aligned_cols=7 Identities=57% Similarity=1.009 Sum_probs=2.9
Q ss_pred EEEEeCC
Q psy5349 54 IEVKDDG 60 (213)
Q Consensus 54 i~V~DnG 60 (213)
++|.|++
T Consensus 76 ~~v~d~~ 82 (131)
T 2di9_A 76 IECSDNG 82 (131)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 3444444
No 77
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=20.57 E-value=91 Score=21.03 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=4.8
Q ss_pred eEEEEeCCCC
Q psy5349 53 LIEVKDDGSG 62 (213)
Q Consensus 53 ~i~V~DnG~G 62 (213)
..+|.|+|.|
T Consensus 59 ~~~v~d~~dG 68 (115)
T 2d7m_A 59 KANIRDNGDG 68 (115)
T ss_dssp CEEEEECSSS
T ss_pred eeEEEECCCC
Confidence 3455555544
Done!