Query psy5349
Match_columns 213
No_of_seqs 159 out of 2638
Neff 8.4
Searched_HMMs 13730
Date Sat Aug 17 00:19:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5349.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5349hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b63a2 d.122.1.2 (A:-2-216) D 100.0 1.1E-52 7.7E-57 337.3 21.1 204 1-207 3-206 (218)
2 d1h7sa2 d.122.1.2 (A:29-231) D 100.0 4.4E-45 3.2E-49 290.1 18.5 193 17-212 1-199 (203)
3 d2hkja3 d.122.1.2 (A:10-228) T 99.9 2.4E-25 1.7E-29 177.7 11.8 174 21-205 21-209 (219)
4 d1kija2 d.122.1.2 (A:9-220) DN 99.8 2.6E-19 1.9E-23 141.5 13.0 184 2-203 1-211 (212)
5 d2iwxa1 d.122.1.1 (A:2-214) HS 99.8 1.1E-19 7.9E-24 143.4 10.6 162 9-185 13-200 (213)
6 d2gqpa1 d.122.1.1 (A:74-337) H 99.8 4.4E-19 3.2E-23 141.0 12.9 167 11-193 13-209 (227)
7 d1ei1a2 d.122.1.2 (A:2-220) DN 99.8 4.2E-19 3E-23 140.7 12.5 166 21-203 33-218 (219)
8 d1s14a_ d.122.1.2 (A:) Topoiso 99.8 1.1E-18 8.1E-23 132.2 13.9 151 21-203 4-167 (168)
9 d1uyla_ d.122.1.1 (A:) HSP90 { 99.8 6.4E-20 4.7E-24 144.4 6.5 162 10-186 13-199 (208)
10 d1id0a_ d.122.1.3 (A:) Histidi 99.6 2.1E-16 1.6E-20 117.6 7.3 97 22-148 44-141 (146)
11 d1ysra1 d.122.1.3 (A:299-446) 99.6 3.7E-16 2.7E-20 116.5 6.8 98 22-148 44-143 (148)
12 d1pvga2 d.122.1.2 (A:7-245) DN 99.6 8.7E-15 6.3E-19 117.0 13.9 163 20-193 51-232 (239)
13 d1bxda_ d.122.1.3 (A:) Histidi 99.6 2.1E-16 1.5E-20 119.5 3.6 99 22-148 47-146 (161)
14 d2c2aa2 d.122.1.3 (A:321-481) 99.6 4.9E-16 3.6E-20 117.4 4.4 101 22-148 49-155 (161)
15 d1gkza2 d.122.1.4 (A:186-378) 99.5 1.8E-15 1.3E-19 117.2 5.3 107 22-148 53-184 (193)
16 d1jm6a2 d.122.1.4 (A:1177-1366 99.5 3E-15 2.2E-19 116.0 4.3 106 22-148 60-175 (190)
17 d1r62a_ d.122.1.3 (A:) Nitroge 99.4 1.9E-14 1.4E-18 107.9 0.3 98 22-157 44-155 (156)
18 d1th8a_ d.122.1.3 (A:) Anti-si 99.0 5.6E-10 4.1E-14 81.4 8.3 79 22-112 39-124 (139)
19 d1y8oa2 d.122.1.4 (A:177-301) 98.9 1.2E-09 8.6E-14 77.3 5.7 51 22-72 64-125 (125)
20 d1ixma_ d.123.1.1 (A:) Sporula 98.8 1.6E-09 1.2E-13 80.2 3.7 57 22-78 97-160 (179)
21 d1i58a_ d.122.1.3 (A:) Histidi 96.3 6.4E-05 4.7E-09 55.2 -3.6 36 93-148 150-185 (189)
22 d1ib8a2 d.52.4.1 (A:1-90) Hypo 39.1 22 0.0016 22.0 4.3 54 20-74 7-63 (90)
23 d2asba3 d.52.3.1 (A:263-329) T 34.7 39 0.0028 19.6 6.0 18 28-46 3-20 (67)
24 d2bp3a1 b.1.18.10 (A:1863-1954 25.5 34 0.0025 20.7 3.5 26 36-61 30-55 (92)
25 d2w0pa1 b.1.18.10 (A:2237-2328 24.4 49 0.0036 19.9 4.2 28 35-62 28-55 (92)
26 d2hg7a1 d.186.2.1 (A:1-60) Pha 24.1 18 0.0013 20.5 1.6 10 53-62 19-28 (60)
27 d2di9a1 b.1.18.10 (A:8-125) Fi 23.3 37 0.0027 21.4 3.5 7 54-60 69-75 (118)
28 d1wgua_ b.55.1.2 (A:) Amyloid 23.0 74 0.0054 20.5 5.2 37 23-62 37-73 (136)
No 1
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.1e-52 Score=337.28 Aligned_cols=204 Identities=30% Similarity=0.542 Sum_probs=189.0
Q ss_pred CccccCCHHHHHHHhCCCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCc
Q psy5349 1 MSINILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKI 80 (213)
Q Consensus 1 m~i~~l~~~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~ 80 (213)
|+|++||++++++|+||++|.+|.+||+|||+||+||+|++|.|.+...+...|+|.|||.||++++++.++.+|+|||.
T Consensus 3 m~I~~L~~~~~~~i~ag~vi~~~~~~vkELveNsiDA~At~I~V~i~~~g~~~i~V~DnG~Gi~~~d~~~~~~r~~TSKi 82 (218)
T d1b63a2 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 82 (218)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSC
T ss_pred CcceECCHHHHHHhCCcCEEecHHHHHHHHHhhhhcCCCCEEEEEEEcCCccEEEEeeCCCCcCHHHHHhhHhccccccc
Confidence 99999999999999999999999999999999999999999999998877779999999999999999999999999999
Q ss_pred CCcccccccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHHHH
Q psy5349 81 TDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQY 160 (213)
Q Consensus 81 ~~~~~~~~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~~~ 160 (213)
..++|+....++||||+||++++.+|+++|.|++.++..+|.+.+..++......+....+||+|+|++||+|+|+|+++
T Consensus 83 ~~~~dl~~~~t~GFRGEAL~Si~~vs~l~I~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~LF~n~PvRrk~ 162 (218)
T d1b63a2 83 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKF 162 (218)
T ss_dssp CSHHHHHTCCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEESTTTTCHHHHHT
T ss_pred cchhhcchhhhhccchhHHHHhhhcCceEEeeecCCCCceEEEEEEeccccceeeecccCCccEEEEEeeEecchHHHHh
Confidence 99999999999999999999999999999999999998999998876666555445666789999999999999999999
Q ss_pred hhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCCCc
Q psy5349 161 LSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPVWT 207 (213)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~~~ 207 (213)
+++. ..++..+.+++++||++||+|+|+|..|++.+++++...+
T Consensus 163 lks~---~~e~~~i~~~v~~~AL~~p~I~F~l~~ngk~~~~~~~~~~ 206 (218)
T d1b63a2 163 LRTE---KTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPE 206 (218)
T ss_dssp CCCH---HHHHHHHHHHHHHHHHHCTTCEEEEEETTEEEEEECCCCT
T ss_pred hCCh---HHHHHHHHHHHHHHhhcCCCeEEEEEECCEEEEEeecCCC
Confidence 8765 4789999999999999999999999999999999886543
No 2
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.4e-45 Score=290.13 Aligned_cols=193 Identities=36% Similarity=0.572 Sum_probs=165.0
Q ss_pred CCcccCHHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCc
Q psy5349 17 SQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRG 96 (213)
Q Consensus 17 ~~~i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 96 (213)
|++|.+|.+||+|||+||+||+|++|.|.+.+++...|+|.|||+||+.++++.++.++++||....++.....++|++|
T Consensus 1 g~vi~~~~~~v~ELi~NsiDA~At~I~i~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~~~~tsk~~~~~~~~~~~t~GfrG 80 (203)
T d1h7sa2 1 GQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRG 80 (203)
T ss_dssp CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSS
T ss_pred CCEEecHHHHHHHHHHHHHcCCCCEEEEEEEcCCEEEEEEeeCCcccCHHHhhhhhhheeecccccccccccccccCccc
Confidence 68999999999999999999999999999987776799999999999999999999999999998888888889999999
Q ss_pred hhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHHHH-hhcchhhHHHHHHHH
Q psy5349 97 EALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQY-LSSKNRMLEELRKVE 175 (213)
Q Consensus 97 ~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~~~-~~~~~~~~~~~~~~~ 175 (213)
+||++++.+++++|+|++.+...+|++.++.+|......|....+||+|+|++||+|+|+|++. .++. +.++.++.
T Consensus 81 eaL~si~~~s~~~i~s~~~~~~~~~~i~~~~~g~~~~~~~~~~~~GTtV~v~~LF~n~PvRrk~f~k~~---~~e~~~i~ 157 (203)
T d1h7sa2 81 EALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNI---KKEYAKMV 157 (203)
T ss_dssp SHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEEEEECCCCSEEEEEEESTTTTSHHHHHHHHHTH---HHHHHHHH
T ss_pred hhhhhhhhccceEEEeecCCCchhEEEEEeccCceeeeeecccccceEEEeehhhhhHHHHHHHhccch---HHHHHHHH
Confidence 9999999999999999999998999999987888877777778899999999999999999984 4433 58899999
Q ss_pred HHHHHHhccCCCeEEEEEEC---C--EEEEEeCCCCcccccc
Q psy5349 176 RVVKCLSLIHCKLRVTLTHN---K--CVIWQKNPVWTVRYLF 212 (213)
Q Consensus 176 ~~l~~~~~~~p~i~f~l~~~---~--~~~~~~~~~~~~~~~~ 212 (213)
+++++||++||+|+|.|.++ + ..+++.++..++++.|
T Consensus 158 ~~l~~~al~~p~v~f~L~~~~~~~~~~~~~~~~~~~sl~~ri 199 (203)
T d1h7sa2 158 QVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENI 199 (203)
T ss_dssp HHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHH
T ss_pred HHHHHHHhcCCCcEEEEEEcCCCCcEEEEEEcCCCCCHHHHH
Confidence 99999999999999999863 1 5678888888887654
No 3
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=99.92 E-value=2.4e-25 Score=177.72 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=128.6
Q ss_pred cCHHHHHHHHHHchhhhCCC-----eeEEEE--EcCC--cceEEEEeCCCCCCcccHHHHHhhcccCCcCCccccccccc
Q psy5349 21 TSVSTAVKELIENAIDAKAT-----SIQINL--MNQG--LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSS 91 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~a~-----~I~I~~--~~~~--~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 91 (213)
.++.++|+|||+||+||++. .|.|.+ ...+ ...|+|.|||+||++++++.+|.+|++++... ....
T Consensus 21 ~~L~~~l~eLi~Naida~~~~~~~~~i~i~i~~~~~~~~~~~i~V~DnG~Gi~~~~~~~~f~~~~~s~~~~-----~~~~ 95 (219)
T d2hkja3 21 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV-----NRQT 95 (219)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEEECSCCCCGGGHHHHHHCCCSSCCCC-----CSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcceEEEEEEEecCCCCEEEEEEEcCCCCCCHHHHHhhccceEeccccc-----cccc
Confidence 46889999999999999864 344444 3322 23899999999999999999999999986432 2346
Q ss_pred CCCCchhhhhhhccC-----e-eEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHHHHHhhcch
Q psy5349 92 YGFRGEALNALCQIG-----E-VSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQYLSSKN 165 (213)
Q Consensus 92 ~G~~G~gl~s~~~~s-----~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r~~~~~~~~ 165 (213)
+|++|+||+++..++ . ++|.|+..+....+.+.+..+..... +. ...++++...++|++.|+|.++....
T Consensus 96 ~G~~GlGl~~~~~~s~~~~g~~i~V~S~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~tv~~~~~~~~~~vr~~~~~~~- 171 (219)
T d2hkja3 96 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNE--PI-IVERGSVENTRGFHGTSVAISIPGDW- 171 (219)
T ss_dssp SCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTE--EE-EEEEEEEECCTTCCEEEEEEEEECCH-
T ss_pred cCccCHHHHHHHHHHHHcCCcEEEEEEEecCCCcEEEEeeccceeeee--ee-cCCCcEEEEecCCcccceeEEecccH-
Confidence 799999999876554 4 89999988877766665542111111 11 12456788889999999987655433
Q ss_pred hhHHHHHHHHHHHHHHhccCCCeEEEEEECCEEEEEeCCC
Q psy5349 166 RMLEELRKVERVVKCLSLIHCKLRVTLTHNKCVIWQKNPV 205 (213)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~~~~~~~~~~ 205 (213)
..+...+.++++.+|+.||++.|+|.+++...+.+.+.
T Consensus 172 --~~~~~~i~~~l~~~al~~P~v~i~l~~~~~~~~~~~R~ 209 (219)
T d2hkja3 172 --PKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRL 209 (219)
T ss_dssp --HHHHHHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCC
T ss_pred --HHHHHHHHHHHHHHHhhCCCeEEEEEcCCCcEEEeech
Confidence 36677889999999999999999999887666666554
No 4
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=99.80 E-value=2.6e-19 Score=141.53 Aligned_cols=184 Identities=22% Similarity=0.297 Sum_probs=128.7
Q ss_pred ccccCCHHHHHHHhCCCc-----ccCHHHHHHHHHHchhhhC----CCeeEEEEEcCCcceEEEEeCCCCCCccc-----
Q psy5349 2 SINILPQSTIRQITTSQI-----ITSVSTAVKELIENAIDAK----ATSIQINLMNQGLDLIEVKDDGSGIPTQD----- 67 (213)
Q Consensus 2 ~i~~l~~~~~~~i~~~~~-----i~~~~~~v~eLi~NA~DA~----a~~I~I~~~~~~~~~i~V~DnG~GI~~~~----- 67 (213)
||+.|..--.=+.+-+.+ ...+.+++.|+|+||+|.. ++.|.|.+..++ +|+|.|||+|||.+.
T Consensus 1 si~~L~~lE~Vr~RP~mYiGst~~~Gl~~l~~Eil~Na~De~~~~~~~~i~v~~~~dg--~i~V~ddG~GIpv~~h~~~~ 78 (212)
T d1kija2 1 AIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEEG 78 (212)
T ss_dssp CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTTT
T ss_pred CceeecccHHHHhCCCcEeCCCCCcchhhhhhhhhhhhhhhhhhcCCceEEEEEcCCC--cEEEEECCcccccccccccC
Confidence 355555532223333333 3568999999999999953 567888887665 899999999999865
Q ss_pred ---HHHHHhh-cccCCcCCcccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe----cc-C
Q psy5349 68 ---VPLICQA-ATTSKITDITDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST----QP-S 137 (213)
Q Consensus 68 ---l~~~~~~-~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~----~~-~ 137 (213)
.+.+|.. ++++++. +.....+.|.+|+|+..++++|+ ++|++++.+.. +...+. .|..... .. .
T Consensus 79 ~~~~e~if~~l~~~~~~d---~~~~~~sgG~hGvGa~vvNalS~~~~v~v~r~~k~--~~~~f~-~g~~~~~~~~~~~~~ 152 (212)
T d1kija2 79 KPAVEVIYNTLHSGGKFE---QGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKH--HRIAFS-RGEVTEPLRVVGEAP 152 (212)
T ss_dssp EEHHHHHHHSSCEESGGG---GSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEE--EEEEEE-TTEEEEEEEEEEECG
T ss_pred cceEEEEEEEEccccccc---CCCceecCCCccccceEEEEeccceEEEEEEecce--eeeEEe-ccccCCcceEccccC
Confidence 3355543 4445543 33456778999999999999999 99999887653 555555 3433221 11 2
Q ss_pred CCCCCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEEEC---CEEEEEeC
Q psy5349 138 HFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHN---KCVIWQKN 203 (213)
Q Consensus 138 ~~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~---~~~~~~~~ 203 (213)
...+||+|++. |+...|-. . ..+.+.+.++++.+|..+|+++|.|.+. .+..|++.
T Consensus 153 ~~~~GT~ItF~------PD~~iF~~-~---~~d~~~l~~rl~~~A~L~~Gl~I~~~Der~~k~~~f~~~ 211 (212)
T d1kija2 153 RGKTGTRVTFK------PDPEIFGN-L---RFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDK 211 (212)
T ss_dssp GGCCEEEEEEE------ECHHHHTT-C---CCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCT
T ss_pred CCCccEEEEEE------Eccccccc-c---EECHHHHHHHHHHHhccCCCCEEEEEeccCCcEEEEEcC
Confidence 23579999997 88776632 2 2556778899999999999999999985 35555554
No 5
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.80 E-value=1.1e-19 Score=143.37 Aligned_cols=162 Identities=21% Similarity=0.274 Sum_probs=108.7
Q ss_pred HHHHHHhCCCcccCHHHHHHHHHHchhhhCCC------------------eeEEEEEcCCcceEEEEeCCCCCCcccHHH
Q psy5349 9 STIRQITTSQIITSVSTAVKELIENAIDAKAT------------------SIQINLMNQGLDLIEVKDDGSGIPTQDVPL 70 (213)
Q Consensus 9 ~~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~------------------~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~ 70 (213)
...++|..+ ++.++..+|+|||+||.||+.. .|.|..+.+ ..+++|.|||+||+.+++..
T Consensus 13 ~ll~ll~~~-lYs~~~iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~d~~-~~~l~i~DnGiGMt~~~~~~ 90 (213)
T d2iwxa1 13 QLMSLIINT-VYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPE-QKVLEIRDSGIGMTKAELIN 90 (213)
T ss_dssp HHHHHHHHC-CCSCTTHHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEEEGG-GTEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHh-hcCCchHHHHHHHHhHHHHHHHHHHhhccCcccccCCcccccccccccc-cceeEEecCCccccHHHHHH
Confidence 345566444 5567999999999999999632 255555433 24999999999999999987
Q ss_pred HHhhcccCCcCCcc----cccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe--c-cCCCCCC
Q psy5349 71 ICQAATTSKITDIT----DLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST--Q-PSHFPNG 142 (213)
Q Consensus 71 ~~~~~~~sk~~~~~----~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~--~-~~~~~~G 142 (213)
.+...+.|....+. ........|.+|+|++|++++|+ |+|.||..+.. .+.|....++..... . ....++|
T Consensus 91 ~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~Fmvad~v~V~trs~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G 169 (213)
T d2iwxa1 91 NLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDE-QYIWESNAGGSFTVTLDEVNERIGRG 169 (213)
T ss_dssp HHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSC-CEEEEECSSSEEEEEECSSSCCCSSE
T ss_pred HHhhhhcccchHHHhhhhhhhhhhhhcccccchhhhhhhccceeEEeecCCcc-cceeeEecCCCcEEEEEeccCCCCCc
Confidence 76655554332211 11223467999999999999999 99999987654 334444444443321 1 2245789
Q ss_pred eEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccC
Q psy5349 143 TTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIH 185 (213)
Q Consensus 143 T~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (213)
|+|++. ++.......+..+++++++.|+-.-
T Consensus 170 T~I~L~------------lk~d~~efle~~rlk~iIkkYS~fI 200 (213)
T d2iwxa1 170 TILRLF------------LKDDQLEYLEEKRIKEVIKRHSEFV 200 (213)
T ss_dssp EEEEEE------------ECTTCGGGGCHHHHHHHHHHHCCCC
T ss_pred EEEEEE------------eCccHHHhcCHHHHHHHHHHHhcCc
Confidence 999997 2222222344568889999999643
No 6
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=99.79 E-value=4.4e-19 Score=141.01 Aligned_cols=167 Identities=20% Similarity=0.284 Sum_probs=108.9
Q ss_pred HHHHhCCCcccCHHHHHHHHHHchhhhCC------------------CeeEEEEEcCCcceEEEEeCCCCCCcccHHHHH
Q psy5349 11 IRQITTSQIITSVSTAVKELIENAIDAKA------------------TSIQINLMNQGLDLIEVKDDGSGIPTQDVPLIC 72 (213)
Q Consensus 11 ~~~i~~~~~i~~~~~~v~eLi~NA~DA~a------------------~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~ 72 (213)
.++|..+ +..++...|+|||+||.||+. -.|.|.+..+. ..++|.|||+||+.+++...+
T Consensus 13 l~ll~~s-LYs~~~iflRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~i~i~~d~~~-~~l~i~DnGiGMt~~e~~~~l 90 (227)
T d2gqpa1 13 MKLIINS-LYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGMTREELVKNL 90 (227)
T ss_dssp HHHHHHH-TTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHH
T ss_pred HHHHHhc-ccCCCchhHHHHHhhHHHHHHHHHHHhccCcccccccchhhhhcccCCCC-cEEEEEecCccccHHHHHHHH
Confidence 3444333 456789999999999999951 13677775443 499999999999999988665
Q ss_pred hhcccCCcCCcc---------cccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEecc--CCCC
Q psy5349 73 QAATTSKITDIT---------DLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTSTQP--SHFP 140 (213)
Q Consensus 73 ~~~~~sk~~~~~---------~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~~~--~~~~ 140 (213)
..-+.|....+. ........|.+|+|++|++.+|+ |+|+|+..+. .++.|..+..|......+ ...+
T Consensus 91 gtIa~Sgt~~f~~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~s~~~~~-~~~~W~s~g~~~~~i~~~~~~~~~ 169 (227)
T d2gqpa1 91 GTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDSNEFSVIADPRGNTLG 169 (227)
T ss_dssp HCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEESSSCEEEEECTTCSCSS
T ss_pred HHHhhcchHHHHHhhhhcccccccchhhhhhcCcceeEEEeeeeeEEEEEeccCC-cccEEEecCCCceecccccccccc
Confidence 433222111110 01112347999999999999999 9999988765 457787776666655332 2346
Q ss_pred CCeEEEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCCCeEEEEE
Q psy5349 141 NGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLT 193 (213)
Q Consensus 141 ~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~ 193 (213)
+||+|++. ++.......+..+++++++.|+-.-| +.+.+.
T Consensus 170 rGT~I~L~------------Lk~d~~efl~~~rl~~iIkkYs~fI~-~PI~l~ 209 (227)
T d2gqpa1 170 RGTTITLV------------LKEEASDYLELDTIKNLVKKYSQFIN-FPIYVW 209 (227)
T ss_dssp SEEEEEEE------------ECGGGGGGGCHHHHHHHHHHHHTTCS-SCEEEE
T ss_pred cceEEEEE------------ecccchhhcCHHHHHHHHHHHhcCCC-CCeEeC
Confidence 79999997 22222223445688999999996543 234443
No 7
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=99.79 E-value=4.2e-19 Score=140.74 Aligned_cols=166 Identities=19% Similarity=0.276 Sum_probs=121.6
Q ss_pred cCHHHHHHHHHHchhhhC----CCeeEEEEEcCCcceEEEEeCCCCCCccc--------HHHHHh-hcccCCcCCccccc
Q psy5349 21 TSVSTAVKELIENAIDAK----ATSIQINLMNQGLDLIEVKDDGSGIPTQD--------VPLICQ-AATTSKITDITDLD 87 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~DA~----a~~I~I~~~~~~~~~i~V~DnG~GI~~~~--------l~~~~~-~~~~sk~~~~~~~~ 87 (213)
..+.+++.|+|+||+|.. ++.|.|.+..++ .|+|.|||+|||.+. .+.+|. .++.+++++ ..
T Consensus 33 ~gl~~l~~Eil~Na~De~~~~~~~~i~v~i~~dg--sIsV~ddGrGIPv~~h~~~~~~~~e~if~~l~tg~~fd~---~~ 107 (219)
T d1ei1a2 33 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD---NS 107 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSS---SS
T ss_pred ccchhhhHhHhhhhhhhhcCCCccceeEEEcCCC--eEEEEECCccccccccCccCCchhhhhhhhhhhccCCCC---Cc
Confidence 358899999999999953 567899997665 899999999999875 455655 455566543 34
Q ss_pred ccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe---ccCCCCCCeEEEEeccccCchHHHHHhhc
Q psy5349 88 SLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST---QPSHFPNGTTVSVKNLFHNLPVRKQYLSS 163 (213)
Q Consensus 88 ~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GT~V~v~~lf~~~p~r~~~~~~ 163 (213)
...+.|.+|+|+..++++|+ ++|++++.+.. +...|. +|....+ ......+||+|++. |+...|-..
T Consensus 108 ~~~sgG~nGvG~~~~NalS~~f~v~~~r~g~~--y~q~f~-~g~~~~~~~~~~~~~~~gT~I~F~------PD~~iF~~~ 178 (219)
T d1ei1a2 108 YKVSGGLHGVGVSVVNALSQKLELVIQREGKI--HRQIYE-HGVPQAPLAVTGETEKTGTMVRFW------PSLETFTNV 178 (219)
T ss_dssp CSSCSCCSSCHHHHHHHTEEEEEEEEEETTEE--EEEEEE-TTEESSCCEEEEECSCCEEEEEEE------ECTTTCCSC
T ss_pred ceeEcCccccceeEEEEeeeEEEEEEEECCEE--EEEEEe-CCeECCCceeccCcCCCCEEEEEE------ECccccCCc
Confidence 56678999999999999999 99999887654 444454 4443211 12344689999998 666555221
Q ss_pred chhhHHHHHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeC
Q psy5349 164 KNRMLEELRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKN 203 (213)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~ 203 (213)
. ...++.|..+++.+|..+|+++|.|.+.. +..|+++
T Consensus 179 ~---~~~~~~l~~R~~dlA~L~~Gl~V~lnder~~~~~~f~~~ 218 (219)
T d1ei1a2 179 T---EFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYE 218 (219)
T ss_dssp C---SCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCC
T ss_pred c---cccHHHHHHHHHHHcccCCCcEEEEEEcCCCcEEEEECC
Confidence 1 14566788999999999999999999864 5555554
No 8
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=99.79 E-value=1.1e-18 Score=132.22 Aligned_cols=151 Identities=20% Similarity=0.290 Sum_probs=108.9
Q ss_pred cCHHHHHHHHHHchhh---hC-CCeeEEEEEcCCcceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCc
Q psy5349 21 TSVSTAVKELIENAID---AK-ATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRG 96 (213)
Q Consensus 21 ~~~~~~v~eLi~NA~D---A~-a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 96 (213)
..|.+.|.|+|+||+| || ++.|.|++..++ +|+|.|||+|||.+.-+. .+....+ -.
T Consensus 4 ~glhHlv~EivDNsiDEa~aG~~~~I~V~l~~D~--si~V~D~GRGIPvd~h~~-------~~~~~~e----------~v 64 (168)
T d1s14a_ 4 TRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPE-------EGVPAVE----------LI 64 (168)
T ss_dssp SSTHHHHHHHHHHHHHHHHTTSCSEEEEEECTTS--CEEEEECSSCCCCSBCTT-------TCSBHHH----------HH
T ss_pred CCCceEEeeeeecHHHHHHcCCCCEEEEEEeCCC--eEEEEEEecccceeeecc-------CCCchhh----------cc
Confidence 4578999999999999 45 789999998776 899999999999753211 1111000 02
Q ss_pred hhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe----c-cCCCCCCeEEEEeccccCchHHHHHhhcchhhHHH
Q psy5349 97 EALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST----Q-PSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEE 170 (213)
Q Consensus 97 ~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~----~-~~~~~~GT~V~v~~lf~~~p~r~~~~~~~~~~~~~ 170 (213)
++.+.+++||. ++|++++.+. .|...|. .|....+ . .....+||+|++. |+..- +... ..+
T Consensus 65 ~t~SVVNALS~~l~v~v~RdGk--~~~q~f~-~G~~~~~l~~~~~~~~~~tGT~I~F~------PD~~I-F~~~---~f~ 131 (168)
T d1s14a_ 65 LCISVVNALSKRVEVNVRRDGQ--VYNIAFE-NGEKVQDLQVVGTCGKRNTGTSVHFW------PDETF-FDSP---RFS 131 (168)
T ss_dssp HHTSHHHHHEEEEEEEEEETTE--EEEEEEE-TTEEEEEEEEEEECCTTCCEEEEEEE------ECGGG-SSCC---SCC
T ss_pred CceeEeeeccCeEEEEEEECCE--EEEEEEC-CCccCCcccceeecccCCCcEEEEEe------eccce-eccc---ccc
Confidence 33456889998 9999999875 4666666 4654332 1 1234579999997 77543 4443 367
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEECC---EEEEEeC
Q psy5349 171 LRKVERVVKCLSLIHCKLRVTLTHNK---CVIWQKN 203 (213)
Q Consensus 171 ~~~~~~~l~~~~~~~p~i~f~l~~~~---~~~~~~~ 203 (213)
++.|.++|+.+|..+|+++|.|.+.. +..|+++
T Consensus 132 ~~~l~~rlre~AfLn~GL~I~l~Der~~~~~~f~ye 167 (168)
T d1s14a_ 132 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 167 (168)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEEEC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEcCCCCEEEEEeC
Confidence 88999999999999999999999863 6667664
No 9
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78 E-value=6.4e-20 Score=144.41 Aligned_cols=162 Identities=22% Similarity=0.235 Sum_probs=105.9
Q ss_pred HHHHHhCCCcccCHHHHHHHHHHchhhhCCC------------------eeEEEEEcCCcceEEEEeCCCCCCcccHHHH
Q psy5349 10 TIRQITTSQIITSVSTAVKELIENAIDAKAT------------------SIQINLMNQGLDLIEVKDDGSGIPTQDVPLI 71 (213)
Q Consensus 10 ~~~~i~~~~~i~~~~~~v~eLi~NA~DA~a~------------------~I~I~~~~~~~~~i~V~DnG~GI~~~~l~~~ 71 (213)
..+.|.. .+..++...|||||+||.||+.+ .|.|....+ ..+++|.|||+||+.+++...
T Consensus 13 ll~ll~~-slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~d~~-~~~l~I~DnGiGMt~~el~~~ 90 (208)
T d1uyla_ 13 LMSLIIN-TFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQ-DRTLTIVDTGIGMTKADLINN 90 (208)
T ss_dssp HHHHHHH-SCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT-TTEEEEEECSCCCCHHHHHTG
T ss_pred HHHHHHH-hhcCCchHhHHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEeecCC-ccEEEEEcCCccccHHHHHhh
Confidence 4455543 45567999999999999999522 366666543 349999999999999998754
Q ss_pred HhhcccCCcCCc----ccccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEEEe--ccCCCCCCeE
Q psy5349 72 CQAATTSKITDI----TDLDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVTST--QPSHFPNGTT 144 (213)
Q Consensus 72 ~~~~~~sk~~~~----~~~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~GT~ 144 (213)
....+.|-...+ +........|.+|+|++|++++++ |+|.||..+... +.|....++..... .....++||+
T Consensus 91 LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~FmVad~v~V~sk~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~GT~ 169 (208)
T d1uyla_ 91 LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQ-YAWESSAGGSFTVRTDTGEPMGRGTK 169 (208)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCC-EEEEECSTTEEEEEECCSSCCSSEEE
T ss_pred cccccccchHHHHHhhhhccchhhhhhcccceEEeeeccCceEEEEecCCcch-heeeeccCCCceEEecccccCCCCcE
Confidence 432222211110 011123467999999999999999 999998766543 44444445554432 2234578999
Q ss_pred EEEeccccCchHHHHHhhcchhhHHHHHHHHHHHHHHhccCC
Q psy5349 145 VSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHC 186 (213)
Q Consensus 145 V~v~~lf~~~p~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 186 (213)
|++. . -|+...| .+..+++++++.|+-.-|
T Consensus 170 I~L~--l--k~d~~ef--------l~~~~i~~likkys~fi~ 199 (208)
T d1uyla_ 170 VILH--L--KEDQTEY--------LEERRIKEIVKKHSQFIG 199 (208)
T ss_dssp EEEE--E--CGGGGGG--------GSHHHHHHHHHHHCTTCS
T ss_pred EEEE--e--CCChHHH--------cCHHHHHHHHHHHhcccC
Confidence 9997 1 1232233 344578899999997544
No 10
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=99.63 E-value=2.1e-16 Score=117.61 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHchhhhCCCeeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 22 SVSTAVKELIENAIDAKATSIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
.+.+++.|||+||++|+...|.|.+...+.. .|+|.|||+|||+++++.+|++|++.+... +..|+||+
T Consensus 44 ~l~~vl~NLl~NAik~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~F~r~~~~~----------~G~GLGL~ 113 (146)
T d1id0a_ 44 DFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR----------PGQGVGLA 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC----------TTCCSCHH
T ss_pred HHHHHHHHHHHHHHHhhcCCEEEEEEeeCCEEEEEEEeeCCCCCHHHHHHHcCCcccCCCCC----------CCeeHHHH
Confidence 5789999999999999999999988755443 899999999999999999999998653221 24699998
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +...+ .++|.+... +..+.||+|++.
T Consensus 114 I~----------k~iv~--------~h~G~i~~~--s~~~~Gt~f~i~ 141 (146)
T d1id0a_ 114 VA----------REITE--------QYEGKIVAG--ESMLGGARMEVI 141 (146)
T ss_dssp HH----------HHHHH--------HTTCEEEEE--ECTTSSEEEEEE
T ss_pred HH----------HHHHH--------HcCCEEEEE--EcCCCeeEEEEE
Confidence 88 54444 357777663 334679999998
No 11
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.61 E-value=3.7e-16 Score=116.52 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHchhhhCC-CeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhh
Q psy5349 22 SVSTAVKELIENAIDAKA-TSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEAL 99 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 99 (213)
.+.+++.|||+||++|+. ..|.|.+...+ ...|+|.|||+|||+++++.+|++|+++.... .+..|+||
T Consensus 44 ~l~~vl~NLl~NAiky~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ife~f~r~~~~~---------~~G~GLGL 114 (148)
T d1ysra1 44 GLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTAS---------HSGSGLGL 114 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--------------------CCC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEEecCCEEEEEEEEcCCCCCHHHHHHhcCccccCCCCC---------CCCccHHH
Confidence 477899999999999874 46888775433 34899999999999999999999998753221 23569999
Q ss_pred hhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 100 NALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 100 ~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+.+ +...+ .++|.+... +..+.||+|+++
T Consensus 115 ~i~----------~~iv~--------~hgG~i~~~--s~~~~Gt~f~i~ 143 (148)
T d1ysra1 115 ALV----------AQQAQ--------LHGGTASLE--NSPLGGARLVLR 143 (148)
T ss_dssp HHH----------HHHHH--------HTTCEEEEE--ECTTSSEEEEEE
T ss_pred HHH----------HHHHH--------HcCCEEEEE--EcCCCeEEEEEE
Confidence 877 44443 467887763 344689999998
No 12
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.59 E-value=8.7e-15 Score=117.01 Aligned_cols=163 Identities=21% Similarity=0.199 Sum_probs=104.1
Q ss_pred ccCHHHHHHHHHHchhhh-----CCCeeEEEEEcCCcceEEEEeCCCCCCcccH--------HHHHh-hcccCCcCCccc
Q psy5349 20 ITSVSTAVKELIENAIDA-----KATSIQINLMNQGLDLIEVKDDGSGIPTQDV--------PLICQ-AATTSKITDITD 85 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~DA-----~a~~I~I~~~~~~~~~i~V~DnG~GI~~~~l--------~~~~~-~~~~sk~~~~~~ 85 (213)
+..+..++.|+|.||+|. ..++|.|.++.+. .+|+|.|||+|||.+.. +.+|. .+++++++.
T Consensus 51 ~~gl~ki~dEil~Na~D~~~r~~~~~~I~v~i~~~~-~si~V~d~GrGIPv~~h~~~~~~~~e~ift~l~ag~nfd~--- 126 (239)
T d1pvga2 51 VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE-HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD--- 126 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCT---
T ss_pred cccceeecceeeecccchhhhccccceEEEEEeCCC-CEEEEEecCcceeeeeccccccchhheeeEeecccccccc---
Confidence 456899999999999994 3568999997422 38999999999998643 34554 455566543
Q ss_pred ccccccCCCCchhhhhhhccCe-eEEEEeeCCCCceEEEEEccCCeEE----EeccCCCCCCeEEEEeccccCchHHHHH
Q psy5349 86 LDSLSSYGFRGEALNALCQIGE-VSVTTKTNSDPVASMYKFSHTGEVT----STQPSHFPNGTTVSVKNLFHNLPVRKQY 160 (213)
Q Consensus 86 ~~~~~~~G~~G~gl~s~~~~s~-v~v~s~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~GT~V~v~~lf~~~p~r~~~ 160 (213)
..+..+.|.+|+|+..++++|+ +++++........+...+..+.... .......++||+|++. |+...|
T Consensus 127 ~~~k~sgGlnGvG~~vvNalS~~f~vev~~~~~g~~~~q~~~~g~~~~~~~~i~~~~~~~~gT~ItF~------PD~~iF 200 (239)
T d1pvga2 127 DEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTRF 200 (239)
T ss_dssp TSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEE------ECGGGG
T ss_pred ccceeeCCeeccceeehhhhhHhhheeeEEeecCceEEEEeeCCccccccccccccccCCCceEEEEE------eCHHHh
Confidence 3445678999999999999998 8888754433344555555332221 1112344679999987 666554
Q ss_pred hhcchhhHHHHHHHHHHHHHHhccCCCeEEEEE
Q psy5349 161 LSSKNRMLEELRKVERVVKCLSLIHCKLRVTLT 193 (213)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~p~i~f~l~ 193 (213)
-. ..-....+..+...+..++...|++.++|.
T Consensus 201 ~~-~~~~~d~l~~~~rr~~~La~~~~~v~V~~N 232 (239)
T d1pvga2 201 GM-KELDNDILGVMRRRVYDINGSVRDINVYLN 232 (239)
T ss_dssp TC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEET
T ss_pred CC-ceeCHHHHHHHHHHHHHHhCCCCceEEEEC
Confidence 22 111112233333344444444588777663
No 13
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=99.59 E-value=2.1e-16 Score=119.50 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHchhhhCCCeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCCchhhh
Q psy5349 22 SVSTAVKELIENAIDAKATSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALN 100 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 100 (213)
.+.+++.|||+||++|+...|.|.+...+ ...|+|.|||+|||+++++.+|++|++.+... ..+..|+||+
T Consensus 47 ~l~~vl~NLi~NAik~~~~~i~i~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~~~--------~~~g~GLGL~ 118 (161)
T d1bxda_ 47 SIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR--------TISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC--------CCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEEeCCEEEEEEEEcCCCCCHHHHHHHhCCceECCCCC--------cCCCCCchHH
Confidence 47899999999999999888888886443 34899999999999999999999998764321 1245699988
Q ss_pred hhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 101 ALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 101 s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+ +...+ .++|.+... +..+.||+|++.
T Consensus 119 iv----------k~iv~--------~hgG~i~v~--s~~~~Gt~f~v~ 146 (161)
T d1bxda_ 119 IV----------QRIVD--------NHNGMLELG--TSERGGLSIRAW 146 (161)
T ss_dssp TT----------HHHHH--------HHTSEEEEE--EETTTEEEEEEE
T ss_pred HH----------HHHHH--------HCCCEEEEE--EcCCCcEEEEEE
Confidence 77 44333 357777653 233579999987
No 14
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=99.57 E-value=4.9e-16 Score=117.39 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHchhhhCCC-----eeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCC
Q psy5349 22 SVSTAVKELIENAIDAKAT-----SIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFR 95 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~-----~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~ 95 (213)
.+.+++.|||+||++|... .|.|.+...+ ...|+|.|||+|||+++++.+|++|++.+.... ...+..
T Consensus 49 ~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~~~~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~------~~~~G~ 122 (161)
T d2c2aa2 49 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT------YEVPGT 122 (161)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------------C
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcceeeEEEEecCCEEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCC------CCCCcc
Confidence 4788999999999999753 4777775433 348999999999999999999999998653221 122356
Q ss_pred chhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 96 GEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 96 G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
|+||+.+ +...+ .++|.+... +..++||+|++.
T Consensus 123 GLGL~i~----------k~iv~--------~hgG~i~v~--s~~~~Gt~f~i~ 155 (161)
T d2c2aa2 123 GLGLAIT----------KEIVE--------LHGGRIWVE--SEVGKGSRFFVW 155 (161)
T ss_dssp CCTHHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred cHHHHHH----------HHHHH--------HCCCEEEEE--ecCCCeeEEEEE
Confidence 9999887 44443 367777763 344689999998
No 15
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.54 E-value=1.8e-15 Score=117.18 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHchhhhC----------CCeeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHHhhcccCCcCCccccc---
Q psy5349 22 SVSTAVKELIENAIDAK----------ATSIQINLMNQGLD-LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLD--- 87 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~----------a~~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~--- 87 (213)
.+.+++.|||.||++|. ...|.|++...... .|+|.|||+|||+++++++|++|+++|.....+..
T Consensus 53 ~l~qvl~NLl~NAi~~t~~~~~~~~~~~~~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~~f~tt~~~~~~~~~~~~ 132 (193)
T d1gkza2 53 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISP 132 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-----------
T ss_pred HHHHHHHHHHHHHHHhcccCceeeccccceEEEEEEccCCEEEEEEecCCCCCCHHHHHHhcCCceeccccccccccccc
Confidence 37899999999999983 23588888655443 89999999999999999999999998754321110
Q ss_pred -----------ccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 88 -----------SLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 88 -----------~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
........|+||+.+ |...+ .++|.+.. .+..+.||+|+++
T Consensus 133 ~~~~~~~~~~~~~~~~~G~GlGL~i~----------k~ive--------~~gG~i~v--~S~~g~Gt~f~l~ 184 (193)
T d1gkza2 133 LFGHLDMHSGGQSGPMHGFGFGLPTS----------RAYAE--------YLGGSLQL--QSLQGIGTDVYLR 184 (193)
T ss_dssp --------------CCSCSSCHHHHH----------HHHHH--------HTTCEEEE--EEETTTEEEEEEE
T ss_pred ccccccccccccccccccCCcCHHHH----------HHHHH--------HCCCEEEE--EecCCCceEEEEE
Confidence 111223569999877 44444 36788776 3445789999997
No 16
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=99.51 E-value=3e-15 Score=115.96 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHchhhhCC---------CeeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccCCcCCccccccccc
Q psy5349 22 SVSTAVKELIENAIDAKA---------TSIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSS 91 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a---------~~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 91 (213)
.+.+++.||+.||++|.. ..|.|.+..+.. ..|+|.|||.|||+++++++|++|++.+...... .....
T Consensus 60 ~l~qvl~NLl~NA~~~~~~~~~~~~~~~~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~-~~~~~ 138 (190)
T d1jm6a2 60 HLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPG-TGGTP 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCTTSCCCEEEEEEECSSEEEEEEEECSCCCCGGGTTGGGCTTCCCSCCC---------
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccceEEEEEEeCCeEEEEEEeccCCCCCHHHHHHHhCcceecCCcCcCc-ccccc
Confidence 378999999999999731 248888865444 3999999999999999999999999987543211 11122
Q ss_pred CCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 92 YGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 92 ~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
.+..|+||+.+ |...+ .++|.+... +..+.||+|+++
T Consensus 139 ~~G~GLGL~i~----------k~ive--------~hgG~I~v~--s~~g~Gt~f~i~ 175 (190)
T d1jm6a2 139 LAGFGYGLPIS----------RLYAK--------YFQGDLQLF--SMEGFGTDAVIY 175 (190)
T ss_dssp -CCSSCHHHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred cCCCCccHHHH----------HHHHH--------HCCCEEEEE--ecCCCceEEEEE
Confidence 34679999887 44443 367887763 344689999998
No 17
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.38 E-value=1.9e-14 Score=107.92 Aligned_cols=98 Identities=24% Similarity=0.355 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHchhhhCCCe-----------eEEEEE--cCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCccccc
Q psy5349 22 SVSTAVKELIENAIDAKATS-----------IQINLM--NQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLD 87 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~~-----------I~I~~~--~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~ 87 (213)
.+.+++.||+.||++|.... ..+.+. ..+ ...|.|.|||.||+++.++.+|++|+++|..
T Consensus 44 ~l~qvl~NLl~NA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~pf~s~k~~------ 117 (156)
T d1r62a_ 44 QIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREG------ 117 (156)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------------
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceeeeccccceeeeccccCCceEEEEEecCCCCCCHHHHHhhcccceecCCC------
Confidence 57899999999999986431 112221 111 1279999999999999999999999987632
Q ss_pred ccccCCCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEeccccCchHH
Q psy5349 88 SLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVR 157 (213)
Q Consensus 88 ~~~~~G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~~lf~~~p~r 157 (213)
..|+||+.+ +...+ .++|.+.... ..+ ||+|++. +|.+
T Consensus 118 ------G~GLGL~i~----------~~iv~--------~hgG~i~v~s--~~g-Gt~f~i~-----LPl~ 155 (156)
T d1r62a_ 118 ------GTGLGLSIA----------RNLID--------QHSGKIEFTS--WPG-HTEFSVY-----LPIR 155 (156)
T ss_dssp --------CHHHHHH----------HHHHH--------HTTCEEEEEE--ETT-EEEEEEE-----EEEE
T ss_pred ------CCCchHHHH----------HHHHH--------HCCCEEEEEE--eCC-cEEEEEE-----EEec
Confidence 469999887 44333 3678877632 233 8999998 6754
No 18
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.00 E-value=5.6e-10 Score=81.44 Aligned_cols=79 Identities=25% Similarity=0.331 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHchhhhCC-----CeeEEEEEcCC-cceEEEEeCCCCCCcccHHHHHhhcccCCcCCcccccccccCCCC
Q psy5349 22 SVSTAVKELIENAIDAKA-----TSIQINLMNQG-LDLIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFR 95 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a-----~~I~I~~~~~~-~~~i~V~DnG~GI~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~ 95 (213)
++..||.|++.||+.++. ..|.|.+...+ ...|+|.|||+||| +.+.++.++++++.. .+..
T Consensus 39 di~~av~E~v~Nai~ha~~~~~~~~I~i~~~~~~~~l~i~i~D~G~gi~--~~~~~~~~~~~~~~~----------~~~~ 106 (139)
T d1th8a_ 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE----------LERS 106 (139)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------------CCC
T ss_pred HHHHHHHHhhhhhhheecCCCCCcEEEEEEEEecCEEEEEEcccccccc--cccccccccceeccc----------CCCc
Confidence 466899999999999862 35777775433 34999999999997 467777777665422 1245
Q ss_pred chhhhhhhccCe-eEEEE
Q psy5349 96 GEALNALCQIGE-VSVTT 112 (213)
Q Consensus 96 G~gl~s~~~~s~-v~v~s 112 (213)
|+||+.+..++. +++.|
T Consensus 107 GlGL~iv~~l~d~i~i~s 124 (139)
T d1th8a_ 107 GMGFTIMENFMDEVIVES 124 (139)
T ss_dssp SCHHHHHHHHSSEEEEEE
T ss_pred hHHHHHHHHhCCEEEEEE
Confidence 899988855443 44333
No 19
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.87 E-value=1.2e-09 Score=77.30 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHchhhhC----------CCeeEEEEEcCCcc-eEEEEeCCCCCCcccHHHHH
Q psy5349 22 SVSTAVKELIENAIDAK----------ATSIQINLMNQGLD-LIEVKDDGSGIPTQDVPLIC 72 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~----------a~~I~I~~~~~~~~-~i~V~DnG~GI~~~~l~~~~ 72 (213)
.+.+++.|||.||++|. ...|.|.+...+.. .|+|+|||.|||+++++++|
T Consensus 64 ~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~IF 125 (125)
T d1y8oa2 64 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLF 125 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhccccccCCCceeEEEEeecCCCEEEEEEEEeCCCcCHHHHcccC
Confidence 37799999999999983 23588877655443 89999999999999999886
No 20
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=98.77 E-value=1.6e-09 Score=80.21 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHchhhhCCC------eeEEEEEcCCc-ceEEEEeCCCCCCcccHHHHHhhcccC
Q psy5349 22 SVSTAVKELIENAIDAKAT------SIQINLMNQGL-DLIEVKDDGSGIPTQDVPLICQAATTS 78 (213)
Q Consensus 22 ~~~~~v~eLi~NA~DA~a~------~I~I~~~~~~~-~~i~V~DnG~GI~~~~l~~~~~~~~~s 78 (213)
.+.+++.+||.||++|... .|.|.+...+. ..|+|.|||.|||++.++.+|++|+..
T Consensus 97 ~l~qvl~Nll~NAi~~~~~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~e~l~~if~~~y~~ 160 (179)
T d1ixma_ 97 KLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYED 160 (179)
T ss_dssp HHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---------
T ss_pred hhHHHHHHHHHHHHHHhhhccccchhhhhhhcccccEEEEEEEeCCCCcCHHHHHHHHHhcccc
Confidence 4689999999999998642 35555544333 499999999999999999999998864
No 21
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=96.34 E-value=6.4e-05 Score=55.17 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=26.7
Q ss_pred CCCchhhhhhhccCeeEEEEeeCCCCceEEEEEccCCeEEEeccCCCCCCeEEEEe
Q psy5349 93 GFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148 (213)
Q Consensus 93 G~~G~gl~s~~~~s~v~v~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~v~ 148 (213)
+..|+||+.+ |...+ .++|.+... +..++||+|++.
T Consensus 150 ~G~GLGLai~----------k~ive--------~hgG~I~v~--S~~g~GT~f~i~ 185 (189)
T d1i58a_ 150 SGRGVGMDVV----------KNVVE--------SLNGSISIE--SEKDKGTKVTIR 185 (189)
T ss_dssp GTCCCHHHHH----------HHHHH--------HTTCEEEEE--EETTTEEEEEEE
T ss_pred CcCccCHHHH----------HHHHH--------HCCCEEEEE--ecCCCCEEEEEE
Confidence 4579999988 55444 468888773 455789999998
No 22
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=39.13 E-value=22 Score=21.98 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=36.4
Q ss_pred ccCHHHHHHHHHHchhhhCCCeeEEEEEcCC-cc--eEEEEeCCCCCCcccHHHHHhh
Q psy5349 20 ITSVSTAVKELIENAIDAKATSIQINLMNQG-LD--LIEVKDDGSGIPTQDVPLICQA 74 (213)
Q Consensus 20 i~~~~~~v~eLi~NA~DA~a~~I~I~~~~~~-~~--~i~V~DnG~GI~~~~l~~~~~~ 74 (213)
..++...+++|++-.+++|-.-+.|.+...+ .. +|.| |.-.||+.++...+-+.
T Consensus 7 ~~~i~e~i~~li~pvv~~G~eL~~ve~~~~~~~~~l~I~I-D~~~gv~iddC~~vSr~ 63 (90)
T d1ib8a2 7 IATIVELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFV-DKPEGITLNDTADLTEM 63 (90)
T ss_dssp HHHHHHHHHHHHHHHHCSSSEEEEEEEEEETTEEEEEEEE-ECSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEEEEeCCCCEEEEEEE-ECCCCcCHHHHHHHHHH
Confidence 3456778888888888888777888875433 23 3444 33348998888766543
No 23
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=34.72 E-value=39 Score=19.56 Aligned_cols=18 Identities=17% Similarity=0.456 Sum_probs=10.7
Q ss_pred HHHHHchhhhCCCeeEEEE
Q psy5349 28 KELIENAIDAKATSIQINL 46 (213)
Q Consensus 28 ~eLi~NA~DA~a~~I~I~~ 46 (213)
.++|.||+- =|+-+.|.+
T Consensus 3 ~~fi~nAL~-Pa~v~~V~i 20 (67)
T d2asba3 3 ARFVANALS-PAKVVSVSV 20 (67)
T ss_dssp HHHHHHHTT-TSCCSEEEE
T ss_pred HHHHHHhCC-CCeeeEEEE
Confidence 468889985 233344444
No 24
>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.49 E-value=34 Score=20.68 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=11.6
Q ss_pred hhCCCeeEEEEEcCCcceEEEEeCCC
Q psy5349 36 DAKATSIQINLMNQGLDLIEVKDDGS 61 (213)
Q Consensus 36 DA~a~~I~I~~~~~~~~~i~V~DnG~ 61 (213)
||+...+.+.+.......+.|.|++.
T Consensus 30 ~aG~g~l~v~v~~p~~~~~~v~~~~d 55 (92)
T d2bp3a1 30 DAGEGGLSLAIEGPSKAEISCTDNQD 55 (92)
T ss_dssp TCCSEEEEEEEEESSCCEEEEEECSS
T ss_pred CCCCCceEEEEEeCCCceEEEEECCC
Confidence 34444455555321112455555553
No 25
>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.37 E-value=49 Score=19.95 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=13.5
Q ss_pred hhhCCCeeEEEEEcCCcceEEEEeCCCC
Q psy5349 35 IDAKATSIQINLMNQGLDLIEVKDDGSG 62 (213)
Q Consensus 35 ~DA~a~~I~I~~~~~~~~~i~V~DnG~G 62 (213)
-+|+...+.|.+..-....+.|.|++.|
T Consensus 28 ~~ag~g~l~v~v~gp~~~~v~v~d~~dg 55 (92)
T d2w0pa1 28 REAGAGGLAIAVEGPSKAEISFEDRKDG 55 (92)
T ss_dssp GGGCSCCEEEEEEESSCCEEEEEECTTS
T ss_pred CCCCCCceEEEEEeCCceEEEEEECCCC
Confidence 3455555555553211125566666544
No 26
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=24.14 E-value=18 Score=20.45 Aligned_cols=10 Identities=40% Similarity=0.870 Sum_probs=9.0
Q ss_pred eEEEEeCCCC
Q psy5349 53 LIEVKDDGSG 62 (213)
Q Consensus 53 ~i~V~DnG~G 62 (213)
-+.|+|||.|
T Consensus 19 DFil~dDGdG 28 (60)
T d2hg7a1 19 DFELRNDGNG 28 (60)
T ss_dssp TEEEEECSSC
T ss_pred ceEEEeCCCc
Confidence 5899999998
No 27
>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.31 E-value=37 Score=21.44 Aligned_cols=7 Identities=57% Similarity=1.009 Sum_probs=2.9
Q ss_pred EEEEeCC
Q psy5349 54 IEVKDDG 60 (213)
Q Consensus 54 i~V~DnG 60 (213)
+.|.|+|
T Consensus 69 ~~v~~~~ 75 (118)
T d2di9a1 69 IECSDNG 75 (118)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 3444444
No 28
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.04 E-value=74 Score=20.52 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=26.8
Q ss_pred HHHHHHHHHHchhhhCCCeeEEEEEcCCcceEEEEeCCCC
Q psy5349 23 VSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSG 62 (213)
Q Consensus 23 ~~~~v~eLi~NA~DA~a~~I~I~~~~~~~~~i~V~DnG~G 62 (213)
...|++.|..++.......|.+.+..+ .|.|.|...+
T Consensus 37 v~~Ai~~l~~~~~~~~~~~v~l~Vs~~---gi~v~~~~~~ 73 (136)
T d1wgua_ 37 LNSAIENLMTSSSKEDWPSVNMNVADA---TVTVISEKNE 73 (136)
T ss_dssp HHHHHHHHHHSSCTTTSCEEEEEEETT---EEEEECSSCS
T ss_pred HHHHHHHHHhhccCCCCcEEEEEEEcC---EEEEEecccc
Confidence 467788888776666677888888765 5778776544
Done!