RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5349
(213 letters)
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 232 bits (595), Expect = 3e-76
Identities = 75/207 (36%), Positives = 124/207 (59%), Gaps = 4/207 (1%)
Query: 2 SINILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGS 61
+I + + ++ QI + Q++ S+STAVKEL+EN++DA AT+I + L + G+DLIEV D+G
Sbjct: 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGC 73
Query: 62 GIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVAS 121
G+ ++ + TSKI + DL + ++GFRGEAL++LC + +V+++T S V +
Sbjct: 74 GVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGT 133
Query: 122 MYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVR-KQYLSSKNRMLEELRKVERVVKC 180
F H G++ P P GTTVSV+ LF LPVR K++ + + E K+ +V+
Sbjct: 134 RLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKK---EYAKMVQVLHA 190
Query: 181 LSLIHCKLRVTLTHNKCVIWQKNPVWT 207
+I +RV+ T+ ++ V T
Sbjct: 191 YCIISAGIRVSCTNQLGQGKRQPVVCT 217
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA
damage, nucleus, phosphop DNA binding protein, protein
binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Length = 367
Score = 221 bits (565), Expect = 8e-72
Identities = 71/198 (35%), Positives = 114/198 (57%), Gaps = 6/198 (3%)
Query: 1 MS-INILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDD 59
M+ I+ + + +IT+ Q+IT ++TAVKEL++N+IDA A I+I + GL+ IE D+
Sbjct: 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 62
Query: 60 GSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPV 119
G GI + + TSKI D+ + + GFRGEAL++LC I ++SV T T S P
Sbjct: 63 GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTT-SPPK 121
Query: 120 ASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVR-KQYLSSKNRMLEELRKVERVV 178
A ++ G +TS + GTTV V LFHNLPVR K++ + R + K V+
Sbjct: 122 ADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKR---QFTKCLTVI 178
Query: 179 KCLSLIHCKLRVTLTHNK 196
+ ++I+ ++ ++ +
Sbjct: 179 QGYAIINAAIKFSVWNIT 196
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag
repair, structural genomics consortium, SGC, protein
bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Length = 348
Score = 186 bits (474), Expect = 3e-58
Identities = 65/197 (32%), Positives = 116/197 (58%), Gaps = 5/197 (2%)
Query: 1 MS--INILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKD 58
++ I L ++ + +I ++I + A+KE+IEN +DAK+TSIQ+ + GL LI+++D
Sbjct: 5 VAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQD 64
Query: 59 DGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDP 118
+G+GI +D+ ++C+ TTSK+ DL S+S+YGFRGEAL ++ + V++TTKT
Sbjct: 65 NGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGK 124
Query: 119 VASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVV 178
A +S +P GT ++V++LF+N+ R++ L + + EE K+ VV
Sbjct: 125 CAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPS---EEYGKILEVV 181
Query: 179 KCLSLIHCKLRVTLTHN 195
S+ + + ++
Sbjct: 182 GRYSVHNAGISFSVKKQ 198
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia
coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A*
1bkn_A 1nhj_A* 1b62_A*
Length = 333
Score = 175 bits (446), Expect = 3e-54
Identities = 62/198 (31%), Positives = 109/198 (55%), Gaps = 9/198 (4%)
Query: 1 MSINILPQSTIRQITTSQII---TSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVK 57
M I +LP QI +++ SV VKEL+EN++DA AT I I++ G LI ++
Sbjct: 3 MPIQVLPPQLANQIAAGEVVERPASV---VKELVENSLDAGATRIDIDIERGGAKLIRIR 59
Query: 58 DDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSD 117
D+G GI ++ L TSKI + DL+++ S GFRGEAL ++ + +++T++T
Sbjct: 60 DNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQ 119
Query: 118 PVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERV 177
A + +P+ P GTT+ V +LF+N P R+++L ++ E ++ +
Sbjct: 120 QEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKT---EFNHIDEI 176
Query: 178 VKCLSLIHCKLRVTLTHN 195
++ ++L + + L+HN
Sbjct: 177 IRRIALARFDVTINLSHN 194
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 4e-08
Identities = 51/255 (20%), Positives = 85/255 (33%), Gaps = 78/255 (30%)
Query: 17 SQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQD--------V 68
+I + + ELI +DA+ + QGL+++E ++ S P +D
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEK------VFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 69 PLIC--QAA---TTSKITDIT------DLDSLSSYG-----------------FRG---E 97
PLI Q A T+K+ T L + + F +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 98 ALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVR 157
A+ L IG N+ S+ + S E PS +S+ NL
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDS--LENNEGVPSPM-----LSISNL--TQEQV 349
Query: 158 KQYLSSKNRMLEELRKVE---------RVVKC---LSLIHCKLRVTLTHNKCVIW----- 200
+ Y++ N L ++VE VV SL L +TL K
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVV-SGPPQSLYG--LNLTLRKAKAPSGLDQSR 406
Query: 201 ----QKNPVWTVRYL 211
++ ++ R+L
Sbjct: 407 IPFSERKLKFSNRFL 421
Score = 42.3 bits (99), Expect = 7e-05
Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 77/232 (33%)
Query: 11 IRQITTSQIITSVSTA--VKELIENAIDAKATSI----QINLMNQ------GLDLIEV-- 56
IR+ ++ I ++ E I I+ +TS + L++ L L+E
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 57 ----KDDGSGIPTQDVP----------LICQAATTSKITDITDLDSLSSYGFRGEALNAL 102
K G IP L A + I L + Y RG +
Sbjct: 1744 FEDLKSKG-LIPADATFAGHSLGEYAALASLA----DVMSIESLVEVVFY--RGMTMQVA 1796
Query: 103 CQIGEV-------------SVTTKTNSDPVASMYKF--SHTGEVTSTQPSHFPNGTTVSV 147
E+ V + + + + + TG + V +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-------------VEI 1843
Query: 148 KNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIH------CKLRVTLT 193
N +N+ +QY+++ +LR ++ V L+ I +L+ +L+
Sbjct: 1844 VN--YNVE-NQQYVAAG-----DLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 26.9 bits (59), Expect = 5.6
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 9/47 (19%)
Query: 17 SQIITS-----VSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKD 58
Q + + + T L N I K I I + + L L EV+
Sbjct: 1851 QQYVAAGDLRALDTVTNVL--NFI--KLQKIDIIELQKSLSLEEVEG 1893
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 44.8 bits (105), Expect = 7e-06
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 22 SVSTAVKELIENAIDA-------KATSIQINLMNQGLDL--IEVKDDGSGIPTQDVPLIC 72
++ V+ELIEN++DA I I+L++ + + V D+G GIP Q+VP
Sbjct: 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAF 90
Query: 73 Q 73
Sbjct: 91 G 91
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 44.4 bits (104), Expect = 1e-05
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 22 SVSTAVKELIENAIDA-------KATSIQINLMNQGLDL--IEVKDDGSGIPTQDVPLIC 72
++ V+ELIEN++DA I I+L++ + + V D+G GIP Q+VP
Sbjct: 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAF 91
Query: 73 Q 73
Sbjct: 92 G 92
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 42.5 bits (99), Expect = 6e-05
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 22 SVSTAVKELIENAIDA-------KATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLI 71
S+ T VKE ++NA+DA +Q+ + ++D+G GI + +P +
Sbjct: 37 SLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKV 93
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction,
transferase; HET: ANP; 1.60A {Escherichia coli} SCOP:
d.122.1.3 PDB: 3cgz_A 3cgy_A
Length = 152
Score = 38.0 bits (89), Expect = 6e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 30 LIENAIDAKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
+++NA ++I+ L I V+DDG GIP +I
Sbjct: 52 VLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVI 94
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat
fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Length = 177
Score = 38.0 bits (89), Expect = 7e-04
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 30 LIENAI----DAKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
+I NA+ + + I++ + L I VKD+G GIP +DV +
Sbjct: 51 IISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKV 97
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl
MAD, two-component systems, transferase; HET: ADP; 1.9A
{Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB:
3dge_A*
Length = 258
Score = 37.9 bits (89), Expect = 0.001
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 30 LIENAI-----DAKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
L+ N + DA +++ L + + I V+D+G GIP I
Sbjct: 146 LLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRI 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 34/232 (14%), Positives = 67/232 (28%), Gaps = 55/232 (23%)
Query: 8 QSTIRQITTSQIITSVSTAVKELIENAIDAK----ATSIQINLMNQGLDL---IEVKD-- 58
T+R T +++ V++ +E + + I+ + IE +D
Sbjct: 62 SGTLRLFWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 59 --DGSGIPTQDVPLICQAATTSKITDITD-LDSLSS------YGFRG--------EALNA 101
D +V + + L L G G + +
Sbjct: 120 YNDNQVFAKYNVSRL------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 102 ---LCQIGE----VSVTTKTNSDPVASM-----YKFSHTGEVTSTQPSHFPNGTTVSVKN 149
C++ +++ + + V M Y+ S S+ S++
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQA 232
Query: 150 LFHNLPVRKQYLSSKNRMLEELRKV--ERVVKCLSLIHCKLRVTLTHNKCVI 199
L K Y L L V + + + CK+ +T T K V
Sbjct: 233 ELRRLLKSKPY----ENCLLVLLNVQNAKAWNAFN-LSCKILLT-TRFKQVT 278
Score = 37.5 bits (86), Expect = 0.003
Identities = 28/182 (15%), Positives = 50/182 (27%), Gaps = 40/182 (21%)
Query: 42 IQINLMN--QGLDLIEVKDDGSGI-PTQDVPLICQAATTSKITDITDLDSLSSYG----- 93
+ + D +V+D I +++ I + T +L S
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQ 80
Query: 94 -FRGEALNA----LCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPSHFPNGTTVSVK 148
F E L L +S P + + F
Sbjct: 81 KFVEEVLRINYKFL-----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK------- 128
Query: 149 NLFHNLPVRKQYLSSKNRMLEELRKVERVV--------K-CLSLIHCK-LRVTLTHNKCV 198
+N+ R Q + L ELR + V+ K ++L C +V + +
Sbjct: 129 ---YNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 199 IW 200
W
Sbjct: 185 FW 186
Score = 36.0 bits (82), Expect = 0.007
Identities = 46/277 (16%), Positives = 86/277 (31%), Gaps = 84/277 (30%)
Query: 1 MSINILPQSTIRQITTS--QIITSVSTAVKE---LIEN----AIDAKATSIQINLMNQGL 51
LP R++ T+ + ++ ++ ++++ +N D T I+ +L L
Sbjct: 313 CRPQDLP----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV--L 366
Query: 52 DLIEVKD---------DGSGIPTQDVPLICQAATTSKITDITDLD---SL-------SSY 92
+ E + + IPT + LI S + + + SL S+
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 93 GFRGEALNALCQ-----------IGEVSVTTKTNSD----PVASMYKFSHTG-------- 129
L + + ++ +SD P Y +SH G
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 130 -EVTSTQPSHF---------------PNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRK 173
E + F + S+ N L K Y+ + E R
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE--RL 544
Query: 174 VERVVKCL-----SLIHCK----LRVTLTHNKCVIWQ 201
V ++ L +LI K LR+ L I++
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 33.7 bits (76), Expect = 0.042
Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 55/230 (23%)
Query: 17 SQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKD---DGSGIPTQDVPLICQ 73
+I+ ++T K++ + A T I ++ + L EVK QD+P +
Sbjct: 266 CKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--E 321
Query: 74 AATTS--KITDITDL--DSLSSY-GFRGEALNALCQIGEVSVTTKTNSDPVASMYK-FSH 127
TT+ +++ I + D L+++ ++ + L I E S+ ++ M+ S
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLS- 379
Query: 128 TGEVTSTQPSHFPNGTTVSVKNL---FHNLPVRKQYLSSKNRMLEELRK---VERVVKCL 181
V FP + L + ++ ++ +L K VE+ K
Sbjct: 380 ---V-------FPPSAHIPTILLSLIWFDVIKSDV-----MVVVNKLHKYSLVEKQPKES 424
Query: 182 SL----IHCKLRVTLT-----HNKCV----------IWQKNPVWTVRYLF 212
++ I+ +L+V L H V P + +Y +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural
genomics, mycobacterium tuberculosis structural
proteomics project; 1.78A {Mycobacterium tuberculosis}
SCOP: d.122.1.3 PDB: 1ys3_A
Length = 150
Score = 36.4 bits (85), Expect = 0.002
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 26 AVKELIENAID-AKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
AV I NA+ AT +Q++ ++ + I + D+GSG+P + ++
Sbjct: 50 AVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVV 97
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding,
structural genomics, NPPSFA, NATI project on protein
structural and functional analyses; HET: ANP; 1.86A
{Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Length = 394
Score = 35.5 bits (81), Expect = 0.010
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 30/132 (22%)
Query: 27 VKELIENAIDA---------KATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLICQAAT 76
+ EL +NA+ A T I++ ++ DL I++ D G G+P + + +
Sbjct: 235 LFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTY 294
Query: 77 TSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQP 136
++ T + D + G L P++ +Y G++
Sbjct: 295 STAPTPVMDNSRNAPLAGFGYGL------------------PISRLYAKYFQGDLNLY-- 334
Query: 137 SHFPNGTTVSVK 148
S GT +
Sbjct: 335 SLSGYGTDAIIY 346
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ));
histidine kinase, osmosensor, His-Asp phosphorelay
system, signal transduction; HET: ANP; NMR {Escherichia
coli BL21} SCOP: d.122.1.3
Length = 161
Score = 33.8 bits (78), Expect = 0.018
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 26 AVKELIENAIDAKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
AV ++ NA I+++ + +V+DDG GI + +
Sbjct: 51 AVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHL 97
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma,
sporulation, serine kinase, transcription; HET: ADP;
2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3
PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Length = 145
Score = 33.1 bits (76), Expect = 0.025
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 20 ITSVSTAVKELIENAI-----DAKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLICQ 73
+T + T V E + NAI + + I+++ + + + V+D+G GIP D+ Q
Sbjct: 37 LTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQ 94
Query: 74 AATTSK 79
T+K
Sbjct: 95 PLFTTK 100
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit
complex, antibiotic resistance, ATP-binding,
nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia
coli} PDB: 1s14_A*
Length = 201
Score = 32.8 bits (76), Expect = 0.039
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 27 VKELIENAID-AKA---TSIQINLMNQGLDLIEVKDDGSGIPT 65
+E+I+N++D A A + + L +EV DDG G+P
Sbjct: 22 GQEVIDNSVDEALAGHAKRVDVILHADQS--LEVIDDGRGMPV 62
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL
nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo
sapiens} PDB: 1zxn_A*
Length = 400
Score = 33.4 bits (77), Expect = 0.043
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 27 VKELIENAIDAK-----ATSIQINLMNQGLDLIEVKDDGSGIPTQDVP 69
E++ NA D K + I++ + + +LI + ++G GIP +
Sbjct: 57 FDEILVNAADNKQRDPKMSCIRVTI-DPENNLISIWNNGKGIPVVEHK 103
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
phosphoprotein, transfe two-component regulatory system;
3.80A {Thermotoga maritima}
Length = 349
Score = 33.0 bits (76), Expect = 0.049
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 30 LIENAIDAKAT--SIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
L++NAI+A I+I + + + V + G IP + I
Sbjct: 252 LVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKI 296
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 33.2 bits (75), Expect = 0.054
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 27 VKELIENAIDA----------KATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLICQAA 75
+ EL +N++ A +++ + DL I++ D G G+P + + +
Sbjct: 258 LFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYM 317
Query: 76 TTSKITDITDLDSLSSYG 93
++ + +
Sbjct: 318 YSTAPRPSLEPTRAAPLA 335
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase,
two-component regulatory system; 1.57A {Thermotoga
maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Length = 152
Score = 32.1 bits (74), Expect = 0.057
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 30 LIENAIDA--KATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
L++NAI+A + I+I + + + V + G IP + I
Sbjct: 55 LVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKI 99
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL
ATPase/kinase family, pyruvate dehydrogenase complex,
mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens}
PDB: 2q8f_A* 2q8h_A
Length = 407
Score = 32.4 bits (73), Expect = 0.093
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 27 VKELIENAIDAKAT-----------SIQINLMNQGLDL-IEVKDDGSGIPTQDVPLICQA 74
V EL +NA+ +AT IQ+++ DL +++ D G G+P + + +
Sbjct: 248 VFELFKNAM--RATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNY 305
Query: 75 ATTSKITDITDLDSLSSYG 93
++ +
Sbjct: 306 MYSTAPRPRVETSRAVPLA 324
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding,
cell inner MEM cell membrane, kinase, membrane,
nucleotide-binding; 2.50A {Escherichia coli}
Length = 222
Score = 31.8 bits (73), Expect = 0.097
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 24 STAVKELIENAIDAKAT----SIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQ 73
S V+ L++NA+ + + + + L V+D+G G+ + + I +
Sbjct: 119 SLLVRNLLDNAV--RYSPQGSVVDVTLNADNF---IVRDNGPGVTPEALARIGE 167
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A
{Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB:
1qzr_A*
Length = 418
Score = 32.2 bits (74), Expect = 0.10
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 27 VKELIENAIDAK-----ATSIQINLMNQGLDLIEVKDDGSGIPTQ 66
E++ NA D K I +N+ + IEVK+DG GIP +
Sbjct: 69 FDEILVNAADNKVRDPSMKRIDVNI-HAEEHTIEVKNDGKGIPIE 112
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI
topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB:
3lps_A*
Length = 408
Score = 32.1 bits (74), Expect = 0.11
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 27 VKELIENAID-AKA---TSIQINLMNQGLDLIEVKDDGSGIPT 65
+E+I+N++D A A I++ L G EV DDG G+P
Sbjct: 55 AQEVIDNSVDEALAGHAKQIEVTLYKDGS--CEVSDDGRGMPV 95
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with
ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP:
d.14.1.3 d.122.1.2
Length = 390
Score = 32.1 bits (74), Expect = 0.11
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 27 VKELIENAID-AKA---TSIQINLMNQGLDLIEVKDDGSGIPT 65
+E+I+N++D A A + + L +EV DDG G+P
Sbjct: 36 GQEVIDNSVDEALAGHAKRVDVILHADQS--LEVIDDGRGMPV 76
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP
binding, structure-based drug antimicrobial, virtual
screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae
GA47373} PDB: 4em7_A*
Length = 226
Score = 31.4 bits (72), Expect = 0.16
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 27 VKELIENAID-AKA---TSIQINLMNQGLDLIEVKDDGSGIPT 65
V E+++NA+D A + I + + G + V+D G G+PT
Sbjct: 45 VWEIVDNAVDEALSGFGDRIDVTINKDGS--LTVQDHGRGMPT 85
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Length = 394
Score = 31.7 bits (71), Expect = 0.16
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 27 VKELIENAIDA---------KATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
+ EL +NA+ A I++ + DL I++ D G G+P + + +
Sbjct: 236 LFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERL 290
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 0.20
Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 38/148 (25%)
Query: 14 ITTSQIITSVSTAVKEL-IENAIDAKATSIQINLMNQG--LD---LIE-----VKDDGSG 62
+TTS+ V+ + + + AK +++ + NQG D LIE K+ G G
Sbjct: 506 VTTSRFSKQVTDYYQSIYAKYG--AKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLG 563
Query: 63 I-PTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVAS 121
+P AA + ++ +DS S + R N L +G V K+
Sbjct: 564 WDLDAIIPF---AAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVK-KQKSARG---- 615
Query: 122 MYKFSHTGEVTSTQPSHF-----PN-GT 143
T+P+ PN GT
Sbjct: 616 ----------IETRPAQVILPMSPNHGT 633
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial,
DNA gyrase B, GY isomerase-isomerase inhibitor complex;
HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A*
1kzn_A* 3g7e_A*
Length = 220
Score = 30.6 bits (70), Expect = 0.30
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
Query: 27 VKELIENAID------AKATSIQINLMNQGLDLIEVKDDGSGIPT 65
V E+++NAID K + I+ N + V+DDG GIPT
Sbjct: 40 VFEVVDNAIDEALAGHCKEIIVTIHADNS----VSVQDDGRGIPT 80
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase;
HET: ATP; 1.74A {Bacillus subtilis}
Length = 128
Score = 29.5 bits (67), Expect = 0.33
Identities = 9/45 (20%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 27 VKELIENAID-AKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVP 69
+KE + N + ++A + ++++ ++ I V DDG+ ++
Sbjct: 45 LKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENSF 89
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding,
structure-based drug antimicrobial, isomerase-isomerase
inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus
aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Length = 198
Score = 30.1 bits (69), Expect = 0.36
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 27 VKELIENAID-AKA---TSIQINLMNQGLDLIEVKDDGSGIPT 65
V E+++N+ID A A I++ + I+V D+G GIP
Sbjct: 36 VWEIVDNSIDEALAGYANQIEVVIEKDNW--IKVTDNGRGIPV 76
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory
system, hiska GHKL domain, structural genomics; 2.50A
{Caulobacter crescentus}
Length = 268
Score = 30.2 bits (69), Expect = 0.38
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 30 LIENAIDAKAT----SIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
L+ENA+ + T + ++ ++ ++V D G G+P I
Sbjct: 163 LVENAL--RQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHI 207
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA
ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Length = 391
Score = 30.1 bits (69), Expect = 0.53
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
Query: 27 VKELIENAID------AKATSIQINLMNQGLDLIEVKDDGSGIPT 65
V E+++NAID K + I+ N + V+DDG GIPT
Sbjct: 39 VFEVVDNAIDEALAGHCKEIIVTIHADNS----VSVQDDGRGIPT 79
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex,
isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus}
SCOP: d.14.1.3 d.122.1.2
Length = 390
Score = 30.1 bits (69), Expect = 0.53
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 27 VKELIENAID-AKA---TSIQINLMNQGLDLIEVKDDGSGIPT 65
KE+++NA+D A A T I + L G + V+D+G GIP
Sbjct: 37 FKEILDNAVDEALAGYATEILVRLNEDGS--LTVEDNGRGIPV 77
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain,
transferase; HET: MSE ADP; 2.10A {Bacillus subtilis}
PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Length = 218
Score = 29.2 bits (66), Expect = 0.79
Identities = 9/45 (20%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 27 VKELIENAID-AKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVP 69
+KE + N + ++A + ++++ ++ I V DDG+ ++
Sbjct: 135 LKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENSF 179
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 29.1 bits (66), Expect = 0.81
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 30 LIENAIDA--KATSIQINL-MNQGLDLIEVKDDGSGIPTQDVPLI 71
+++NAI+A ++Q+ + ++ G LI + D G G+ + + +
Sbjct: 131 VMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERL 175
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
transferase, mitochondrial protein kinase, potassium;
HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
d.122.1.4 PDB: 1gjv_A 1gkx_A*
Length = 388
Score = 29.2 bits (65), Expect = 1.0
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 27 VKELIENAIDA----------KATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
+ EL++NA+ A + I + N +DL I + D G GI +D+ +
Sbjct: 243 LPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRV 298
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase;
1.90A {Mycobacterium tuberculosis}
Length = 124
Score = 28.3 bits (64), Expect = 1.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 37 AKATSIQINLMNQGLDLIEVKDDGSGIP 64
A ATS+ IN+ + +EV DDG GI
Sbjct: 55 ANATSLAINVSVEDDVRVEVVDDGVGIS 82
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two
component system, transfera; 1.60A {Escherichia coli}
SCOP: d.122.1.3
Length = 160
Score = 28.3 bits (64), Expect = 1.2
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 14/49 (28%)
Query: 30 LIENAIDAKA-----------TSIQINLMNQGLDL---IEVKDDGSGIP 64
++ NA+ A T+ Q+ L + L I+V+D+G GIP
Sbjct: 56 IVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIP 104
>3zxo_A Redox sensor histidine kinase response regulator; transferase;
HET: MSE; 1.90A {Mycobacterium tuberculosis}
Length = 129
Score = 27.6 bits (62), Expect = 1.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 37 AKATSIQINLMNQGLDLIEVKDDGSGIPTQ 66
A A+++ + + IEV D+G G+P +
Sbjct: 59 AAASTLTVRVKVDDDLCIEVTDNGRGMPDE 88
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown
function, B-subunit binding, isomerase,
nucleotide-binding, topoisomerase; HET: DNA; 1.95A
{Myxococcus xanthus}
Length = 369
Score = 28.3 bits (64), Expect = 2.2
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 27 VKELIENAID-AKA---TSIQINLMNQGLDLIEVKDDGSGIPT 65
V L++ A + A+ + + + G I + +
Sbjct: 35 VYFLLDVAYEEARRGECRDVVLEVGGDGS--IALFCTSRTVTA 75
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 26.6 bits (59), Expect = 3.4
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 54 IEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTK 113
I+V G+ + P + + DL ++Y L S+T
Sbjct: 40 IQVTAPGAPPLQAETP-----GSAVDYP-LHDLVLHTNYTATVRGLRGPNLTSPASITFT 93
Query: 114 TNSDPVASMYKFSHTGEVTSTQPS 137
T + + EVT + PS
Sbjct: 94 TGLEAPRDL----EAKEVTPSGPS 113
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation,
redox control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 27.2 bits (61), Expect = 4.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 15 TTSQIITSVSTAVKELIENAIDA 37
Q++ SVS A ++L E AI +
Sbjct: 60 RKDQLVGSVSKANQDLAEKAIQS 82
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein,
transferase; HET: ACP ADP; 1.60A {Thermotoga maritima}
SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A*
1i5d_A*
Length = 189
Score = 26.7 bits (60), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 53 LIEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLS 90
+IEV+DDG GI D I + A + D + +LS
Sbjct: 93 VIEVEDDGRGI---DKEKIIRKAIEKGLIDESKAATLS 127
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea}
Length = 101
Score = 25.2 bits (55), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 4/23 (17%)
Query: 125 FSHTGEVTSTQPSH----FPNGT 143
FS T +T+T PS+ FP+G+
Sbjct: 78 FSQTATLTNTNPSYGACNFPSGS 100
>1zp7_A Recombination protein U; recombination,DNA-binding
protein,resolvase, DNA binding protein; 2.25A {Bacillus
subtilis} PDB: 1rzn_A
Length = 206
Score = 26.0 bits (57), Expect = 8.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 138 HFPNGTTVSVKNLFHNLPVRKQYLSSKNR--MLEEL 171
+PNG T K+ + +K+ S NR LE+
Sbjct: 3 RYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDD 38
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 25.5 bits (56), Expect = 8.4
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 15/73 (20%)
Query: 54 IEVKDDGSGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIG------E 107
+E+ D G + + + L S+Y R +A N G
Sbjct: 46 LELDDGNGGQFREVYV------GKETMCTVDGLHFNSTYNARVKAFNK---TGVSPYSKT 96
Query: 108 VSVTTKTNSDPVA 120
+ + T S P +
Sbjct: 97 LVLQTSEGSGPSS 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.369
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,004,385
Number of extensions: 164488
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 57
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)