RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5349
(213 letters)
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 218
Score = 161 bits (409), Expect = 9e-51
Identities = 62/205 (30%), Positives = 113/205 (55%), Gaps = 3/205 (1%)
Query: 1 MSINILPQSTIRQITTSQIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDG 60
M I +LP QI +++ ++ VKEL+EN++DA AT I I++ G LI ++D+G
Sbjct: 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 62
Query: 61 SGIPTQDVPLICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVA 120
GI ++ L TSKI + DL+++ S GFRGEAL ++ + +++T++T A
Sbjct: 63 CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 122
Query: 121 SMYKFSHTGEVTSTQPSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKC 180
+ +P+ P GTT+ V +LF+N P R+++L ++ E ++ +++
Sbjct: 123 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKT---EFNHIDEIIRR 179
Query: 181 LSLIHCKLRVTLTHNKCVIWQKNPV 205
++L + + L+HN ++ Q V
Sbjct: 180 IALARFDVTINLSHNGKIVRQYRAV 204
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 133 bits (335), Expect = 7e-40
Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 2/190 (1%)
Query: 18 QIITSVSTAVKELIENAIDAKATSIQINLMNQGLDLIEVKDDGSGIPTQDVPLICQAATT 77
Q++ S+STAVKEL+EN++DA AT+I + L + G+DLIEV D+G G+ ++ + T
Sbjct: 2 QVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHT 61
Query: 78 SKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTSTQPS 137
SKI + DL + ++GFRGEAL++LC + +V+++T S V + F H G++ P
Sbjct: 62 SKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPY 121
Query: 138 HFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVTLTHNKC 197
P GTTVSV+ LF LPVR + + +E K+ +V+ +I +RV+ T+
Sbjct: 122 PRPRGTTVSVQQLFSTLPVRHKEFQRNIK--KEYAKMVQVLHAYCIISAGIRVSCTNQLG 179
Query: 198 VIWQKNPVWT 207
++ V T
Sbjct: 180 QGKRQPVVCT 189
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 73.3 bits (179), Expect = 1e-16
Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 16/185 (8%)
Query: 22 SVSTAVKELIENAIDA-------KATSIQINLMNQGLDL--IEVKDDGSGIPTQDVPLIC 72
++ V+ELIEN++DA I I+L++ + + V D+G GIP Q+VP
Sbjct: 22 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAF 81
Query: 73 QAATTSKITDITDLDSLSSYGFRGEALNA-LCQIGEVSVTTKTNSDPVASMYKFSHTGEV 131
S + G + L + + Q + + T + +K
Sbjct: 82 GRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKL---KID 138
Query: 132 TSTQPSHFPNGTTVSVKNLFHNLPVRKQYLSSKNRMLEELRKVERVVKCLSLIHCKLRVT 191
+ +V FH V + ++ +K +I
Sbjct: 139 INKNEPIIVERGSVENTRGFHGTSVAISIPGD---WPKAKSRIYEYIKRTYIITPYAEFI 195
Query: 192 LTHNK 196
+
Sbjct: 196 FKDPE 200
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 36.8 bits (85), Expect = 6e-04
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 30 LIENAIDAKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLICQAATTSK 79
++ NA I+++ + +V+DDG GI + + Q
Sbjct: 55 MVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGD 105
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 212
Score = 36.6 bits (84), Expect = 0.001
Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 15/135 (11%)
Query: 27 VKELIENAID----AKATSIQINLMNQGLDLIEVKDDGSGIPTQD---------VPLICQ 73
KE+++NA+D AT I + L G + V+D+G GIP +
Sbjct: 31 FKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNT 88
Query: 74 AATTSKITDITDLDSLSSYGFRGEALNALCQIGEVSVTTKTNSDPVASMYKFSHTGEVTS 133
+ K S +G +NAL + V V + +A
Sbjct: 89 LHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVV 148
Query: 134 TQPSHFPNGTTVSVK 148
+ GT V+ K
Sbjct: 149 GEAPRGKTGTRVTFK 163
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 34.5 bits (79), Expect = 0.003
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 26 AVKELIENAIDA-KATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
AV I NA+ AT +Q++ ++ + I + D+GSG+P + ++
Sbjct: 48 AVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVV 95
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 33.0 bits (75), Expect = 0.013
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 30 LIENAIDAKATSIQINLMNQGLD------LIEVKDDGSGIPTQDVPLICQ 73
L+ N + + LD LI V+D+G GIP I +
Sbjct: 57 LLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFE 106
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 29.7 bits (66), Expect = 0.18
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 30 LIENAIDA---------KATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLICQAATTSK 79
L +NA+ A I+I + DL I++ D G G+P + + + ++
Sbjct: 68 LFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTA 127
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia
coli [TaxId: 562]}
Length = 146
Score = 29.4 bits (66), Expect = 0.19
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 30 LIENAIDAKATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLI 71
+++NA ++I+ L I V+DDG GIP +I
Sbjct: 52 VLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVI 94
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 28.9 bits (64), Expect = 0.32
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 23/144 (15%)
Query: 25 TAVKELIENAIDAKATSIQINLMNQGL-----------------DLIEVKDDGSGIPTQD 67
++ELI N+ DA +L + + + D G G+ D
Sbjct: 27 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKAD 86
Query: 68 VPL----ICQAATTSKITDITDLDSLSSYGFRGEALNALCQIGE--VSVTTKTNSDPVAS 121
+ I ++ T + + + +S G G + + E +T + + A
Sbjct: 87 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAW 146
Query: 122 MYKFSHTGEVTSTQPSHFPNGTTV 145
+ V + GT V
Sbjct: 147 ESSAGGSFTVRTDTGEPMGRGTKV 170
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 26.8 bits (58), Expect = 1.3
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 54 IEVKDDGSGIPTQDVPLI 71
I++ D G G+P + + +
Sbjct: 107 IKISDLGGGVPLRKIDRL 124
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid
dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 193
Score = 27.2 bits (59), Expect = 1.5
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 27 VKELIENAIDA----------KATSIQINLMNQGLDL-IEVKDDGSGIPTQDVPLICQAA 75
+ EL++NA+ A + I + N +DL I + D G GI +D+ +
Sbjct: 58 LPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYH 117
Query: 76 TTSKITDITDLDSLSSYGFRGEA 98
T+ D +G
Sbjct: 118 FTTAEASTQDPRISPLFGHLDMH 140
>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS)
{Thermus thermophilus [TaxId: 274]}
Length = 70
Score = 23.5 bits (51), Expect = 6.7
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 26 AVKELIENAIDAKATSIQINLMNQGL 51
A+K +E A++A+ +++ + + L
Sbjct: 42 AIKAALEAALEAREKALEEAALKEAL 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.369
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,475
Number of extensions: 30895
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 16
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)