BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy535
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 27/246 (10%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
++RVV+ G L I+ + DSG+Y C N A E ++ P +
Sbjct: 168 DSRVVVLPSGALQISRLQPGDSGVYRCSARN------PASTRTGNEAEVRILSDPGLHRQ 221
Query: 69 PFRLQ------------GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF 116
+ LQ V++C + P + TW + + +++ ++K ++ +LL
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF-TWLRGEEVIQ-LRSKKYSLLGGSNLLI 279
Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
+ V + G YTC + +S ++ VLV PP F P +Y ES+D+ E
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTVLV--PPWFLNHPSNLYAY---ESMDIEFEC 334
Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGG-NITIEGLRRVDFGYYECVVSNEVATIVQ 235
G PT+ W + V +P + +IVGG N+ I G+ + D G+Y+CV NE
Sbjct: 335 A-VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQS 393
Query: 236 AAQLVV 241
+AQL+V
Sbjct: 394 SAQLIV 399
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 16/223 (7%)
Query: 29 DSGLYMCEVSNG-IGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV-VQCHIKANPTF 86
D GLY CE S G G + A + V P + + T F V ++C + +P
Sbjct: 93 DEGLYQCEASLGDSGSIISRTAKVMVAGPLRF-LSQTESITAFMGDTVLLKCEVIGDP-M 150
Query: 87 QYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ-GSSGQM 144
+ W K+++ L P +VV+ +G+L +R+ G Y C+ N T+ G+ ++
Sbjct: 151 PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV 210
Query: 145 EVL----VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR-RDGVALPK 199
+L + + F +P + + ++V C G P+ TW R + + L
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECC----VSGYPPPSFTWLRGEEVIQLRS 266
Query: 200 NRVKIVGG-NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
+ ++GG N+ I + D G Y CVV+ + I +A+L V
Sbjct: 267 KKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTV 309
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 24/281 (8%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV- 76
+LVIN V D G Y C+ N +G ++ + E +F ++ + L V
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVA 120
Query: 77 -QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNA 134
+C I + Q V+W KD LL+ + N +L + +Q+H G+Y C+ N
Sbjct: 121 FECRINGSEPLQ-VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNP 179
Query: 135 HGTQGSSGQMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
GT SS ++ + + PP F +KP ++ +GES C GT ITW + +
Sbjct: 180 LGTASSSAKLTLSEHEVPPFFDLKPVSV-DLALGESGTFKCHVT---GTAPIKITWAKDN 235
Query: 194 GVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
P K+ +T+ + + D G Y C SN +AQL V+ P
Sbjct: 236 REIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ----EPP 291
Query: 250 YNITGVATEFSVTLEWLPGYS----GGPDLKQNYVIWYREQ 286
I + V + Y G P++K V+WY+++
Sbjct: 292 RFIKKLEPSRIVKQDEHTRYECKIGGSPEIK---VLWYKDE 329
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 141/328 (42%), Gaps = 31/328 (9%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
+++ TL + V D+G Y C SN G+ + A L V+ P + F ++ P R+
Sbjct: 248 LVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPR--FIKKLE--PSRI 302
Query: 73 -----QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL-FTRVNQNHQGR 126
+C I +P + V W KD+ ++ + +++ ++L ++ G
Sbjct: 303 VKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
YTC +NA G+ SS ++ V++PP F KP + K G V + CE Q GT
Sbjct: 362 YTCEAHNAAGSASSSTSLK--VKEPPVFRKKPHPVETLK-GADVHLECELQ---GTPPFQ 415
Query: 187 ITWQRRDGVALPKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
++W + + KI+ N I I + D G Y+C SN+V + + ++
Sbjct: 416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG----NKDWLPIPVTP 298
P ++ ++T ++ G + V W++++G D + I +
Sbjct: 476 AP-PRFVKKLSDISTVVGEEVQLQATIEGAEPIS---VAWFKDKGEIVRESDNIWISYSE 531
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELG 326
+T + +R PA ++ KNE G
Sbjct: 532 NIAT-LQFSRAEPANAGKYTCQIKNEAG 558
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 10/128 (7%)
Query: 25 VGSDDSGLYMCEVSNGIGEPQAAQAY-LNV--EFPAKVTFTPTVQYLPFRLQGVVQCHIK 81
V S D G Y C+ SN +G + L F K++ TV +LQ ++
Sbjct: 447 VDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE---G 503
Query: 82 ANPTFQYVTWTKDK-RLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNAHGTQG 139
A P V W KDK ++ I +N +L F+R + G+YTC N GTQ
Sbjct: 504 AEPI--SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561
Query: 140 SSGQMEVL 147
+ VL
Sbjct: 562 CFATLSVL 569
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 25/236 (10%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQ 77
GTL+I +DSG Y+C V+N +G ++ + L V P P Q + F V
Sbjct: 306 GTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 364
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
C NP + V+W KD + + ++ L V + +G Y C N +
Sbjct: 365 CQYTGNP-IKTVSWMKDGKAIGHSES---------VLRIESVKKEDKGMYQCFVRNDRES 414
Query: 138 QGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL 197
+S ++++ R P + + G SV + C A G P I+W+ DG +
Sbjct: 415 AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG---GNPTPEISWE-LDGKKI 470
Query: 198 PKNRVKIVGGNITIEG----------LRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
N VG +T+ G + D G Y+C+ ++V +A+L V G
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 37/245 (15%)
Query: 17 DGTLVINPVGSD-DSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG- 74
+GTL+I V + D Y C N G +A+ L V+ V P + +PF +
Sbjct: 578 NGTLIIENVERNSDQATYTCVAKNQEG--YSARGSLEVQ----VMVLPRI--IPFAFEEG 629
Query: 75 --------VVQCHIKANPTFQYVTWTKDKRLL-EPYQTKDIVVMQNGSLL-FTRVNQNHQ 124
+ C + + WT D + + E V + GS+L V +H
Sbjct: 630 PAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHA 689
Query: 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP--EAMYQRKVGESVDMHCEAQEAEGT 182
G +TC N G Q + + V V PP + ++P +A Q G + C +A+G
Sbjct: 690 GNFTCHARNLAGHQQFTTPLNVYV--PPRWILEPTDKAFAQ---GSDAKVEC---KADGF 741
Query: 183 QKPTITWQRRDGVA------LPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ 235
KP +TW++ G L K + +++ G + ++ +++ + GYY C N + + +
Sbjct: 742 PKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLS 801
Query: 236 AAQLV 240
A ++
Sbjct: 802 AVIMI 806
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 32/238 (13%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
+ + + + L I V +D G+Y C V N + ++A+A ++ + F P V
Sbjct: 380 DGKAIGHSESVLRIESVKKEDKGMYQCFVRN---DRESAEASAELKLGGR--FDPPVIRQ 434
Query: 69 PFRLQGV-------VQCHIKANPTFQYVTWTKDKRLL---EPYQTKDIVVMQNGSLL--- 115
F+ + + ++C NPT + ++W D + + + YQ V + NG ++
Sbjct: 435 AFQEETMEPGPSVFLKCVAGGNPTPE-ISWELDGKKIANNDRYQVGQYVTV-NGDVVSYL 492
Query: 116 -FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHC 174
T V+ N G Y C + G S ++ V P ++ +A+ GE++ + C
Sbjct: 493 NITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY-GLPYIRQMEKKAIV---AGETLIVTC 548
Query: 175 EAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRR-VDFGYYECVVSNE 229
G +I W+ RD ALP NR + V G + IE + R D Y CV N+
Sbjct: 549 PVA---GYPIDSIVWE-RDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQ 602
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 96/258 (37%), Gaps = 37/258 (14%)
Query: 3 TKVGSLETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEFP 56
T VG + I DG LV P ++D + +Y C N G + ++
Sbjct: 79 TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 138
Query: 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTF-----QYVTW-TKDKRLLEPYQTKD--IVV 108
+++ V++C I P+F + V+W T ++ P D +V
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLI---PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195
Query: 109 MQNGSLLFTRVN-QNHQGRYTC-TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV 166
+ +G L V ++ Y C T + G S LV P + P+ + K
Sbjct: 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255
Query: 167 -------GESVDMHCEAQEAEGTQKPTITW-------QRRDGVALPKNRVKIVGGNITIE 212
++ + C AQ G P W R+ V L +RVK V G + I+
Sbjct: 256 DMKTYSGSSTMALLCPAQ---GYPVPVFRWYKFIEGTTRKQAVVL-NDRVKQVSGTLIIK 311
Query: 213 GLRRVDFGYYECVVSNEV 230
D G Y CVV+N V
Sbjct: 312 DAVVEDSGKYLCVVNNSV 329
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
++GTL ++ + + G Y+CE NGIG +A ++V+
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA---LPKNRVKIV 205
+K P F +P ++ C+A G P I W R DG A +P R
Sbjct: 36 QKGPVFLKEPTNRIDFSNSTGAEIECKAS---GNPMPEIIWIRSDGTAVGDVPGLRQISS 92
Query: 206 GGNITIEGLRRVDF------GYYECVVSNEVATIV 234
G + R D+ Y C+ N+ +I+
Sbjct: 93 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 127
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 101/244 (41%), Gaps = 23/244 (9%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQ----AYLNVEFPAKVTFTPTVQ 66
V + G L I + D G Y C ++ + + A LN+ F P+++
Sbjct: 150 HFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIK 209
Query: 67 -------YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV 119
Y Q ++C NP + + W K L P T +Q S+ F
Sbjct: 210 ARFPAETYALVGQQVTLECFAFGNPVPR-IKWRKVDGSLSPQWTTAEPTLQIPSVSF--- 265
Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA 179
+G Y C N+ G G+ ++V+ P + +K + + +G ++ C A
Sbjct: 266 --EDEGTYECEAENSKGRDTVQGR--IIVQAQPEW-LKVISDTEADIGSNLRWGCAAA-- 318
Query: 180 EGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
G +PT+ W R +NRV+++ G++ L D G Y+CV N+ TI +A+L
Sbjct: 319 -GKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAEL 377
Query: 240 VVEG 243
V+
Sbjct: 378 AVQA 381
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 98/271 (36%), Gaps = 24/271 (8%)
Query: 18 GTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
G LVI NP + D+G+Y C SN +G + +A L F + + + P +
Sbjct: 60 GNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFS---KEERDPVKAHEGW 116
Query: 77 QCHIKANPTFQYVTWTKDKRLLE-----PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131
+ NP Y + L E P + V G+L R N + G Y+C
Sbjct: 117 GVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLA 176
Query: 132 -----YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRK----VGESVDMHCEAQEAEGT 182
++ Q+ + F +A + + VG+ V + C A G
Sbjct: 177 TSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAF---GN 233
Query: 183 QKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
P I W++ DG P+ + I + D G YEC N +++V+
Sbjct: 234 PVPRIKWRKVDGSLSPQ--WTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQ 291
Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGP 273
QP I+ + L W +G P
Sbjct: 292 A-QPEWLKVISDTEADIGSNLRWGCAAAGKP 321
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 135/349 (38%), Gaps = 49/349 (14%)
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
+ SL V + GRY C + G G M + + P F I + +Y G +
Sbjct: 62 SSSLHIKDVKLSDSGRYDCEAASRIG--GHQKSMYLDIEYAPKF-ISNQTIYYSWEGNPI 118
Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI----VGGNITIE--GLRRVDFGYYE 223
++ C+ + +I W RRD + LP KN + G + +E DFG Y
Sbjct: 119 NISCDVK---SNPPASIHW-RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWL----PGYSGGPDLKQNY 279
C +N + T Q L + P +PY + + E S T + P GG + +Y
Sbjct: 175 CTATNHIGTRFQEYILALADV-PSSPYGVKII--ELSQTTAKVSFNKPDSHGGVPI-HHY 230
Query: 280 VIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXX 339
+ +E ++ W I + T + +N L P TTYE +V N G G S I
Sbjct: 231 QVDVKEVASEIW-KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL 289
Query: 340 XXXXXXXRNVS-VTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
++ F +S + + I Y++KYR+ + +E+
Sbjct: 290 PVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRS------------KDKED 337
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
+L E + QGNKD I + L YE Q+ N LG
Sbjct: 338 QWL-EKKVQGNKD------------HIILEHLQWTMGYEVQITAANRLG 373
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 7 SLETRVVIKK---DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
SL+ R+ +K +L I V DSG Y CE ++ IG Q + YL++E+ K
Sbjct: 49 SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM-YLDIEYAPKFISNQ 107
Query: 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV---N 120
T+ Y + C +K+NP + W +DK +L T ++ G + + +
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 121 QNHQGRYTCTPYNAHGTQ 138
N GRY CT N GT+
Sbjct: 167 DNDFGRYNCTATNHIGTR 184
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 122/339 (35%), Gaps = 80/339 (23%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR-DGVALPKN------RV 202
+P +K E Y+ V + C+A EG P ITW+R DG + R+
Sbjct: 1 QPHIIQLKNETTYENG---QVTLVCDA---EGEPIPEITWKRAVDGFTFTEGDKSLDGRI 54
Query: 203 KIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATE 258
++ G ++ I+ ++ D G Y+C ++ + ++ L +E +AP I+
Sbjct: 55 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----YAPKFISNQTIY 110
Query: 259 FSVTLEWLPGYSGGP-----DLKQN---YVIWYREQGNKDWLPIPVTPPGSTQIT----I 306
+S + G P D+K N + W R+ K LP T T T I
Sbjct: 111 YS--------WEGNPINISCDVKSNPPASIHWRRD---KLVLPAKNTTNLKTYSTGRKMI 159
Query: 307 NRLTPATTYEF---QVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSVTEVNNGFVISWQ 363
+ P + +F N +G I + + +++ +S+
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAK--VSFN 217
Query: 364 PPLERASL-IQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420
P + I +Y + + S WK + ++
Sbjct: 218 KPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ-------------------------- 251
Query: 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
T + +N L P TTYE +V N G G S I + +T
Sbjct: 252 --TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 8 LETRVVIKKDGTLV-INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
+TR I+++G L+ I V D G+Y C +NG+G + L V+ K+T P
Sbjct: 51 FDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINV 110
Query: 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR 126
+ L+ V+ C NP V+W K L + I V+++GSL V + G+
Sbjct: 111 KIIEGLKAVLPCTTMGNPK-PSVSWIKGDSALR--ENSRIAVLESGSLRIHNVQKEDAGQ 167
Query: 127 YTCTPYNAHGTQGS 140
Y C N+ GT S
Sbjct: 168 YRCVAKNSLGTAYS 181
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL-FTRVNQNHQGRYTCTPYNA-H 135
C +++ P + ++WT++K L++ + T+ + +NG LL V + G Y CT N
Sbjct: 29 CAVESYPQPE-ISWTRNKILIKLFDTR-YSIRENGQLLTILSVEDSDDGIYCCTANNGVG 86
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
G S G ++V ++ P T +P + G + C G KP+++W + D
Sbjct: 87 GAVESCGALQVKMK--PKIT-RPPINVKIIEGLKAVLPCTTM---GNPKPSVSWIKGDSA 140
Query: 196 ALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVAT 232
+R+ ++ G++ I +++ D G Y CV N + T
Sbjct: 141 LRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGT 178
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA 57
+R+ + + G+L I+ V +D+G Y C N +G + L VE A
Sbjct: 145 SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 22/230 (9%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
+++ TL + V D+G Y C SN G+ + A L V+ P + F ++ P R+
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQAPPR--FIKKLE--PSRI 110
Query: 73 -----QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL-FTRVNQNHQGR 126
+C I +P + V W KD+ ++ + +++ ++L ++ G
Sbjct: 111 VKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
YTC +NA G+ SS ++ V++PP F KP + K G V + CE Q GT
Sbjct: 170 YTCEAHNAAGSASSSTSLK--VKEPPVFRKKPHPVETLK-GADVHLECELQ---GTPPFQ 223
Query: 187 ITWQRRDGVALPKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVAT 232
++W + + KI+ N I I + D G Y+C SN+V +
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 104/286 (36%), Gaps = 33/286 (11%)
Query: 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSL 114
P P L G +CH+ + +TW KD R + P + +++N +L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHC 174
+V + G+YTC N G S Q+ V+ PP F K E K E C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLG--VQAPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 175 EAQEAEGTQKPTITWQRRDGV--ALPKNRVKIVGGNITIE--GLRRVDFGYYECVVSNEV 230
+ G+ + + W + + K R+ V +E L D G Y C N
Sbjct: 122 KIG---GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 231 ATIVQAAQLVVEG-----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
+ + L V+ +PH + G L+ P + V W+++
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ---------VSWHKD 229
Query: 286 Q-----GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
+ G K + ++ T I I + A E+Q N++G
Sbjct: 230 KRELRSGKKYKI---MSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 22/230 (9%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
+++ TL + V D+G Y C SN G+ + A L V+ P + F ++ P R+
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPR--FIKKLE--PSRI 110
Query: 73 -----QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL-FTRVNQNHQGR 126
+C I +P + V W KD+ ++ + +++ ++L ++ G
Sbjct: 111 VKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
YTC +NA G+ SS ++ V++PP F KP + K G V + CE Q GT
Sbjct: 170 YTCEAHNAAGSASSSTSLK--VKEPPVFRKKPHPVETLK-GADVHLECELQ---GTPPFQ 223
Query: 187 ITWQRRDGVALPKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVAT 232
++W + + KI+ N I I + D G Y+C SN+V +
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 105/286 (36%), Gaps = 33/286 (11%)
Query: 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSL 114
P P L G +CH+ + +TW KD R + P + +++N +L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHC 174
+V + G+YTC N G S Q+ V++PP F K E K E C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLG--VQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 175 EAQEAEGTQKPTITWQRRDGV--ALPKNRVKIVGGNITIE--GLRRVDFGYYECVVSNEV 230
+ G+ + + W + + K R+ V +E L D G Y C N
Sbjct: 122 KIG---GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 231 ATIVQAAQLVVEG-----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
+ + L V+ +PH + G L+ P + V W+++
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ---------VSWHKD 229
Query: 286 Q-----GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
+ G K + ++ T I I + A E+Q N++G
Sbjct: 230 KRELRSGKKYKI---MSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 131/328 (39%), Gaps = 35/328 (10%)
Query: 17 DGTLVIN-PVGSDDSGLYMCEVSNGIG-----EPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
DG+L+IN P + D+G Y C +N G E + AYL F + T +V+
Sbjct: 60 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-NFKTRTRSTVSVR---- 114
Query: 71 RLQG-VVQCHIKANPTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLLFTRVNQNHQGRYT 128
R QG V+ C + W ++ YQ + V + G+L +V ++ G YT
Sbjct: 115 RGQGMVLLCGPPPHSGELSYAWIFNE--YPSYQDNRRFVSQETGNLYIAKVEKSDVGNYT 172
Query: 129 CTPYNAHGTQGSSGQMEVLVRK--------PPAFTIK-PEAMYQRKVGESVDMHCEAQEA 179
C N G L+ + P ++ PE + K G +V + C A
Sbjct: 173 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK-GTTVKLECFAL-- 229
Query: 180 EGTQKPTITWQRRDGVALP-KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
G PTI W+R DG + K R G + I ++ D G YECV N V Q
Sbjct: 230 -GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ 288
Query: 239 LVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
L QP+ I + ++ W +G P ++ +D + I
Sbjct: 289 LTFYA-QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI---E 344
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELG 326
G+ ITI L+ A Y Q V +N+ G
Sbjct: 345 QGTLNITIVNLSDAGMY--QCVAENKHG 370
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 95/248 (38%), Gaps = 33/248 (13%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGI------GEPQAA-----------QAYLNV 53
R V ++ G L I V D G Y C V+N + G P + + V
Sbjct: 149 RFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV 208
Query: 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS 113
+FP V P + +L+ C NP + W + +P K NG
Sbjct: 209 QFPETV---PAEKGTTVKLE----CFALGNPV-PTILWRRADG--KPIARKARRHKSNGI 258
Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMH 173
L Q G Y C N+ G + GQ+ +P I + + ESV
Sbjct: 259 LEIPNFQQEDAGSYECVAENSRGKNVAKGQL-TFYAQPNWVQIINDIHVAME--ESVFWE 315
Query: 174 CEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233
C+A G KPT W + L ++R++I G + I + D G Y+CV N+ I
Sbjct: 316 CKAN---GRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 372
Query: 234 VQAAQLVV 241
+A+L V
Sbjct: 373 FSSAELSV 380
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
K +G L I +D+G Y C N G+ A+ L F A+ + + + ++
Sbjct: 254 KSNGILEIPNFQQEDAGSYECVAENSRGK-NVAKGQLT--FYAQPNWVQIINDIHVAMEE 310
Query: 75 VVQCHIKAN----PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
V KAN PT++ W K+ +P T+D + ++ G+L T VN + G Y C
Sbjct: 311 SVFWECKANGRPKPTYR---WLKNG---DPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 364
Query: 131 PYNAHGTQGSSGQMEVLV 148
N HG SS ++ V+
Sbjct: 365 AENKHGVIFSSAELSVIA 382
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 131/328 (39%), Gaps = 35/328 (10%)
Query: 17 DGTLVIN-PVGSDDSGLYMCEVSNGIG-----EPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
DG+L+IN P + D+G Y C +N G E + AYL F + T +V+
Sbjct: 61 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-NFKTRTRSTVSVR---- 115
Query: 71 RLQG-VVQCHIKANPTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLLFTRVNQNHQGRYT 128
R QG V+ C + W ++ YQ + V + G+L +V ++ G YT
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNE--YPSYQDNRRFVSQETGNLYIAKVEKSDVGNYT 173
Query: 129 CTPYNAHGTQGSSGQMEVLVRK--------PPAFTIK-PEAMYQRKVGESVDMHCEAQEA 179
C N G L+ + P ++ PE + K G +V + C A
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK-GTTVKLECFAL-- 230
Query: 180 EGTQKPTITWQRRDGVALP-KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
G PTI W+R DG + K R G + I ++ D G YECV N V Q
Sbjct: 231 -GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ 289
Query: 239 LVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
L QP+ I + ++ W +G P ++ +D + I
Sbjct: 290 LTFYA-QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI---E 345
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELG 326
G+ ITI L+ A Y Q V +N+ G
Sbjct: 346 QGTLNITIVNLSDAGMY--QCVAENKHG 371
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 95/248 (38%), Gaps = 33/248 (13%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGI------GEPQAA-----------QAYLNV 53
R V ++ G L I V D G Y C V+N + G P + + V
Sbjct: 150 RFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV 209
Query: 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS 113
+FP V P + +L+ C NP + W + +P K NG
Sbjct: 210 QFPETV---PAEKGTTVKLE----CFALGNPV-PTILWRRADG--KPIARKARRHKSNGI 259
Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMH 173
L Q G Y C N+ G + GQ+ +P I + + ESV
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQL-TFYAQPNWVQIINDIHVAME--ESVFWE 316
Query: 174 CEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233
C+A G KPT W + L ++R++I G + I + D G Y+CV N+ I
Sbjct: 317 CKAN---GRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 373
Query: 234 VQAAQLVV 241
+A+L V
Sbjct: 374 FSSAELSV 381
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
K +G L I +D+G Y C N G+ A+ L F A+ + + + ++
Sbjct: 255 KSNGILEIPNFQQEDAGSYECVAENSRGK-NVAKGQLT--FYAQPNWVQIINDIHVAMEE 311
Query: 75 VVQCHIKAN----PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
V KAN PT++ W K+ +P T+D + ++ G+L T VN + G Y C
Sbjct: 312 SVFWECKANGRPKPTYR---WLKNG---DPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 365
Query: 131 PYNAHGTQGSSGQMEVLV 148
N HG SS ++ V+
Sbjct: 366 AENKHGVIFSSAELSVIA 383
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 7 SLETRVVIKK---DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
SL+ R+ +K +L I V DSG Y CE ++ IG Q + YL++E+ K
Sbjct: 49 SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM-YLDIEYAPKFISNQ 107
Query: 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV---N 120
T+ Y + C +K+NP + W +DK +L T ++ G + + +
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 121 QNHQGRYTCTPYNAHGTQ 138
N GRY CT N GT+
Sbjct: 167 DNDFGRYNCTATNHIGTR 184
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 23/234 (9%)
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
+ SL V + GRY C + G G M + + P F I + +Y G +
Sbjct: 62 SSSLHIKDVKLSDSGRYDCEAASRIG--GHQKSMYLDIEYAPKF-ISNQTIYYSWEGNPI 118
Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI----VGGNITIE--GLRRVDFGYYE 223
++ C+ + +I W RRD + LP KN + G + +E DFG Y
Sbjct: 119 NISCDVK---SNPPASIHW-RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWL----PGYSGGPDLKQNY 279
C +N + T Q L + P +PY + + E S T + P GG + +Y
Sbjct: 175 CTATNHIGTRFQEYILALADV-PSSPYGVKII--ELSQTTAKVSFNKPDSHGGVPI-HHY 230
Query: 280 VIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 333
+ +E ++ W I + T + +N L P TTYE +V N G G S I
Sbjct: 231 QVDVKEVASEIW-KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKI 283
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 123/339 (36%), Gaps = 80/339 (23%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR-DGVALPKN------RV 202
+P +K E Y+ V + C+A EG P ITW+R DG + R+
Sbjct: 1 QPHIIQLKNETTYENG---QVTLVCDA---EGEPIPEITWKRAVDGFTFTEGDKSLDGRI 54
Query: 203 KIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATE 258
++ G ++ I+ ++ D G Y+C ++ + ++ L +E +AP I+
Sbjct: 55 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----YAPKFISNQTIY 110
Query: 259 FSVTLEWLPGYSGGP-----DLKQN---YVIWYREQGNKDWLPIPVTPPGSTQIT----I 306
+S + G P D+K N + W R+ K LP T T T I
Sbjct: 111 YS--------WEGNPINISCDVKSNPPASIHWRRD---KLVLPAKNTTNLKTYSTGRKMI 159
Query: 307 NRLTPATTYEF---QVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSVTEVNNGFVISWQ 363
+ P + +F N +G I + + +++ +S+
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAK--VSFN 217
Query: 364 PPLERASL-IQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420
P + I +Y + + S WK + R G +
Sbjct: 218 KPDSHGGVPIHHYQVDVKEVASEIWKIV----------------RSHGVQ---------- 251
Query: 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
T + +N L P TTYE +V N G G S I + +T
Sbjct: 252 --TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 28/234 (11%)
Query: 11 RVVIKKDGT---LVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
RVV++K+G L I +D+G+Y C+ ++ G+ Q A L E K+TF V
Sbjct: 50 RVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL--EIYQKLTFREVVSP 107
Query: 68 LPFRL--QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG 125
F+ V C + ++P V+W + ++ N +L +N++ +G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG 166
Query: 126 RYTCTPYNAHGTQGSSGQME-----VLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQE 178
Y C G + G+++ V+V PPA ++ P+ + GE + C A
Sbjct: 167 IYRC-----EGRVEARGEIDFRDIIVIVNVPPAISM-PQKSFNATAERGEEMTFSCRAS- 219
Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGGN---ITIEGLRRVDFGYYECVVSNE 229
G+ +P I+W R+G + +N I+ G+ +T+ + D G Y C +N+
Sbjct: 220 --GSPEPAISW-FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNK 270
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 37/251 (14%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIG---------------EPQAAQAY---LN 52
R V + G L I + D G Y C ++ I + A+ Y +
Sbjct: 151 RFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK 210
Query: 53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG 112
+FPA T+ T Q + ++C NP Q + W K L+ QT + +
Sbjct: 211 AKFPAD-TYALTGQMV------TLECFAFGNPVPQ-IKWRK----LDGSQTSKWLSSEP- 257
Query: 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDM 172
L V+ +G Y C N G G++ ++ +P + + + +G +
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI-IIHAQPDWLDVITDT--EADIGSDLRW 314
Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
C A G +P + W R +NR+++ GG + L D G Y+CV N+ T
Sbjct: 315 SCVAS---GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT 371
Query: 233 IVQAAQLVVEG 243
+ +A+L V+
Sbjct: 372 VYASAELTVQA 382
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 102/286 (35%), Gaps = 33/286 (11%)
Query: 18 GTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
G LVI NPV + D+G Y C +N G + +A L F + + + P ++
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS---AEERDPVKITEGW 117
Query: 77 QCHIKANPTFQYVTWTKDKRLLE-----PYQTKDIVVMQNGSLLFTRVNQNHQGRYTC-- 129
+P Y + L E P + V G+L + + G Y+C
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFA 177
Query: 130 TPYNAHGTQGSSGQMEVLV-------RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
T + T+ + L + P+ K A G+ V + C A G
Sbjct: 178 TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF---GN 234
Query: 183 QKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDF---GYYECVVSNEVATIVQAAQL 239
P I W++ DG K + + ++ VDF G YEC N ++
Sbjct: 235 PVPQIKWRKLDG----SQTSKWLSSEPLLH-IQNVDFEDEGTYECEAENIKGRDTYQGRI 289
Query: 240 VVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
++ QP IT + L W SG P + V W R+
Sbjct: 290 IIHA-QPDWLDVITDTEADIGSDLRWSCVASGKP---RPAVRWLRD 331
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 21/151 (13%)
Query: 4 KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP--------QAAQAYLNVEF 55
K+ +T + + L I V +D G Y CE N G A +L+V
Sbjct: 243 KLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV-- 300
Query: 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL 115
T T + L+ K P V W +D +P +++ + + G L
Sbjct: 301 -----ITDTEADIGSDLRWSCVASGKPRPA---VRWLRDG---QPLASQNRIEVSGGELR 349
Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
F+++ G Y C N HGT +S ++ V
Sbjct: 350 FSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ-RRDGVAL---PKNRVKIVGG 207
PA T+ PE + KV + C A+ P T++ + +G L P +R ++V G
Sbjct: 11 PAHTLFPEGSAEEKV----TLTCRAR-----ANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 208 NITIEG-LRRVDFGYYECVVSNEVATIV 234
++ I ++ D G Y+CV +N T+V
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVV 89
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 22/237 (9%)
Query: 1 MNTKVGSLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAK 58
+N + + R+ + D TL + V +D G Y C + N + + LNV + P
Sbjct: 324 VNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDD 383
Query: 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR 118
T +P+ Y + + CH +NP QY +W D + + Q L +
Sbjct: 384 PTISPSYTYYRPGVNLSLSCHAASNPPAQY-SWLIDGNIQQHTQ----------ELFISN 432
Query: 119 VNQNHQGRYTCTPYN-AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
+ + + G YTC N A G ++ + + + P +I + ++V CE
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP- 491
Query: 178 EAEGTQKPTITWQRRDGVALPKN-RVKIVGGN--ITIEGLRRVDFGYYECVVSNEVA 231
EA+ T T W +G +LP + R+++ GN +T+ + R D Y C + N V+
Sbjct: 492 EAQNT---TYLWW-VNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS 544
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 19/217 (8%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQYLPFRLQGVVQ 77
TL + V +D+ Y CE N + ++ LNV + P T +P +
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLS 224
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH-G 136
CH +NP QY +W + + Q L + N+ G YTC +N+ G
Sbjct: 225 CHAASNPPAQY-SWFVNGTFQQSTQ----------ELFIPNITVNNSGSYTCQAHNSDTG 273
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
++ + +PP I + ++V + CE + Q T W +
Sbjct: 274 LNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPE----IQNTTYLWWVNNQSL 329
Query: 197 LPKNRVKIVGGN--ITIEGLRRVDFGYYECVVSNEVA 231
R+++ N +T+ + R D G YEC + NE++
Sbjct: 330 PVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELS 366
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 6/168 (3%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEV--SNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
R +I + +L+I + +D+G Y V S+ + E Q + E P + + +
Sbjct: 64 REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPV 123
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
+ C + Y+ W ++ L P + + N +L V +N Y
Sbjct: 124 EDKDAVAFTCEPETQDA-TYLWWVNNQSL--PVSPRLQLSNGNRTLTLFNVTRNDTASYK 180
Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
C N + S + ++ P A TI P R GE++++ C A
Sbjct: 181 CETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRS-GENLNLSCHA 227
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAH-GTQGSSGQMEVLVRKP-PAFTIKPEAMYQR 164
++ N SLL + QN G YT + + ++GQ V P P+ + +
Sbjct: 66 IIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVED 125
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYY 222
K ++V CE + TQ T W + R+++ GN +T+ + R D Y
Sbjct: 126 K--DAVAFTCEPE----TQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179
Query: 223 ECVVSNEVA 231
+C N V+
Sbjct: 180 KCETQNPVS 188
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 33/189 (17%)
Query: 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQ----GRY 127
+ C ++ P + W KD EP T + V ++G+L F R Q + G Y
Sbjct: 29 LNCKVEGKPE-PTIEWFKDG---EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 128 TCTPYNAHG---TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
C N G ++ +S Q+ VL F ++P+ K GE+ + C +G +
Sbjct: 85 WCVAKNRVGQAVSRHASLQIAVLRDD---FRVEPKDTRVAK-GETALLECGP--PKGIPE 138
Query: 185 PTITWQRRDGVAL---------PKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIV 234
PT+ W + DGV L +RV+IV GGN+ I + +D G Y+C+ N V T
Sbjct: 139 PTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197
Query: 235 QA-AQLVVE 242
+ A+L+V+
Sbjct: 198 SSYAKLIVQ 206
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 29 DSGLYMCEVSNGIGEPQAAQAYLNVE-FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQ 87
D G Y C N +G+ + A L + P + +++C
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139
Query: 88 YVTWTKDKRLLEPYQ------TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
+ W KD L+ + + + ++ G+LL + V +G Y C N GT+ SS
Sbjct: 140 TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 33/189 (17%)
Query: 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQ----GRY 127
+ C ++ P + W KD EP T + V ++G+L F R Q + G Y
Sbjct: 29 LNCKVEGKPE-PTIEWFKDG---EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 128 TCTPYNAHG---TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
C N G ++ +S Q+ VL F ++P+ K GE+ + C +G +
Sbjct: 85 WCVAKNRVGQAVSRHASLQIAVLRDD---FRVEPKDTRVAK-GETALLECGP--PKGIPE 138
Query: 185 PTITWQRRDGVAL---------PKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIV 234
PT+ W + DGV L +RV+IV GGN+ I + +D G Y+C+ N V T
Sbjct: 139 PTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197
Query: 235 QA-AQLVVE 242
+ A+L+V+
Sbjct: 198 SSYAKLIVQ 206
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 29 DSGLYMCEVSNGIGEPQAAQAYLNVE-FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQ 87
D G Y C N +G+ + A L + P + +++C
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139
Query: 88 YVTWTKDKRLLEPYQ------TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
+ W KD L+ + + + ++ G+LL + V +G Y C N GT+ SS
Sbjct: 140 TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT---KDIVVMQ 110
+FP ++ P+ + + C + PT + W K +E + +++
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 111 NGSLLFTRVNQNHQGR-----YTCTPYNAHGTQGS-SGQMEVLVRKPPAFTIKPEAMYQR 164
+GSL F R+ + R Y C N G S +EV + + F P +
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD-DFRQNPSDVMV- 123
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIVGGNITIEGLRRVDFGYY 222
VGE M C Q G +PTI+W ++DG L R+ I GG + I R+ D G Y
Sbjct: 124 AVGEPAVMEC--QPPRGHPEPTISW-KKDGSPLDDKDERITIRGGKLMITYTRKSDAGKY 180
Query: 223 ECVVSNEVA 231
CV +N V
Sbjct: 181 VCVGTNMVG 189
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 29 DSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF--TPTVQYLPFRLQGVVQCHIKANPTF 86
D G+Y+C N +GE + A L V + F P+ + V++C
Sbjct: 83 DEGVYVCVARNYLGEAVSHDASLEVAI-LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPE 141
Query: 87 QYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS-GQM 144
++W KD P KD + ++ G L+ T ++ G+Y C N G + S ++
Sbjct: 142 PTISWKKDG---SPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAEL 198
Query: 145 EVLVRKPPAF 154
VL R P+F
Sbjct: 199 TVLER--PSF 206
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 18/224 (8%)
Query: 29 DSGLYMCEVSNGIGEPQAAQAYLNV----EFPA---KVTFTPTVQYLPFRLQGVVQCHIK 81
D +Y C N +GE A L V + P+ + P ++ + + C
Sbjct: 75 DENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 82 ANPTFQYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140
NP + +TW KD ++P + I +++G+L + QG+Y C N+ G + S
Sbjct: 134 GNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS 192
Query: 141 S-GQMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
S + V V+ P F+I P + ++ G +V++ C A G+ P + W + P
Sbjct: 193 SPANLYVRVQNVAPRFSILPMS-HEIMPGGNVNITCVAV---GSPMPYVKWMQGAEDLTP 248
Query: 199 KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
++ + VG N+ +E D Y CV + + I AQ+ V+
Sbjct: 249 EDDMP-VGRNV-LELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---- 205
+PP F +P + ++G S + +A G KP +TW ++ G + R + +
Sbjct: 5 EPPRFIKEP----KDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVNSQRFETIEFDE 59
Query: 206 --GGNITIEGLRR-VDFGYYECVVSNEVATIVQAAQLVV--EGTQPHAPYNITG----VA 256
G + I+ LR D YECV N V I A+L V E P NI
Sbjct: 60 SAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV 119
Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
E + T L SG PD + + W+ KD+LP+
Sbjct: 120 VERTRTATMLCAASGNPDPE---ITWF-----KDFLPV 149
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 101/263 (38%), Gaps = 48/263 (18%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
K TLVI ++ S LY CE N +G + ++ P ++T P +Q P +
Sbjct: 512 KTVSTLVIQ--AANVSALYKCEAVNKVGRGERVISFHVTRGP-EITLQPDMQ--PTEQES 566
Query: 75 VVQCHIKANPTFQYVTWTK-----------------DKRL---------LEPYQTKDIVV 108
V TF+ +TW K K L + T DI++
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 109 MQ--NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS--GQMEVLVRKPPAFTIKPEAMYQR 164
M+ N SL QG Y C + + Q+ VL R P T E
Sbjct: 627 MELKNASL-------QDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQ-TT 678
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYY 222
+GES+++ C A G P I W + + + + + + GN +TI +R+ D G Y
Sbjct: 679 SIGESIEVSCTAS---GNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY 735
Query: 223 ECVVSNEVATIVQAAQLVVEGTQ 245
C + + A ++EG Q
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQ 758
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
+L V ++ QG YTC + T+ +S + V + AF E++ + VGE V
Sbjct: 290 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVR 349
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231
+ + G P I W ++G+ L N G +TI + D G Y +++N ++
Sbjct: 350 I---PAKYLGYPPPEIKWY-KNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPIS 405
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 21/224 (9%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF--TPTVQYLPFRLQGV 75
TL I DD+G+Y C V+ G ++A +NV+ K+ F PT Q V
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDG--TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 76 VQCHIKAN--PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
+ C + ++ PT + W R + + +V+ N L + + +G Y C
Sbjct: 120 IVCDVVSSLPPT---IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRI 176
Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAM-YQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
+ + ++V+V PP + + +G+SV + C +A+G +PT++W +
Sbjct: 177 LARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC---DADGFPEPTMSWT-K 232
Query: 193 DGVAL-------PKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
DG + K+ +TI + + D Y C+ N+
Sbjct: 233 DGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK 276
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 15/151 (9%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCE---VSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
+ R ++ + L I + D G Y CE ++ G + Q +NV P V ++
Sbjct: 146 DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV--PPTVQARQSI 203
Query: 66 QYLPFRLQGVVQCHIKAN----PTFQYVTWTKDKRLLEPYQTKD---IVVMQNGSLLFTR 118
L V A+ PT ++WTKD +E + D I + L
Sbjct: 204 VNATANLGQSVTLVCDADGFPEPT---MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRN 260
Query: 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
V++N + Y C N G Q +S ++V +
Sbjct: 261 VDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQ 77
GTL+I +DSG Y+C V+N +G ++ + L V P P Q + F V
Sbjct: 273 GTLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 331
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
C NP + V+W KD + + ++ L V + +G Y C N +
Sbjct: 332 CQYTGNP-IKTVSWMKDGKAIGHSES---------VLRIESVKKEDKGMYQCFVRNDRES 381
Query: 138 QGSSGQMEV 146
+S ++++
Sbjct: 382 AEASAELKL 390
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 35/231 (15%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
ETR+ K ++ PVGS + PQ +++VE + + Q
Sbjct: 193 ETRLSATKGRLVITEPVGSVRPKV----------NPQDKHQFIDVELASSYSLLCMAQSY 242
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
P P+F++ + + + D V +G+L+ G+Y
Sbjct: 243 P-------------TPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 289
Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
C N+ G G S + + V P + I P G C+ G T++
Sbjct: 290 CVVNNSVG--GESVETVLTVTAPLSAKIDPPTQ-TVDFGRPAVFTCQYT---GNPIKTVS 343
Query: 189 WQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
W + DG A+ + + IE +++ D G Y+C V N+ + +A+L
Sbjct: 344 WMK-DGKAIGHSE-----SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 388
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 94/257 (36%), Gaps = 33/257 (12%)
Query: 3 TKVGSLETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEFP 56
T VG + I DG LV P ++D + +Y C N G + ++
Sbjct: 44 TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVI 103
Query: 57 AKVTFTPTVQYLPFRLQGVVQCHIK---ANPTFQYVTWTKDKRLLEPYQTKDI----VVM 109
+Y+ V++C I A+ F + + R P + +V+
Sbjct: 104 QSYESEADNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVL 163
Query: 110 QNGSLLFTRVN-QNHQGRYTC-TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRK-- 165
+G L V ++ Y C T + G S LV P +++P+ Q K
Sbjct: 164 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQ 223
Query: 166 -----VGESVDMHCEAQEAEGTQKPTITW-------QRRDGVALPKNRVKIVGGNITIEG 213
+ S + C AQ P+ W R+ V L +RVK V G + I+
Sbjct: 224 FIDVELASSYSLLCMAQ---SYPTPSFRWYKFIEGTTRKQAVVL-NDRVKQVSGTLIIKD 279
Query: 214 LRRVDFGYYECVVSNEV 230
D G Y CVV+N V
Sbjct: 280 AVVEDSGKYLCVVNNSV 296
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQ 77
GTL+I +DSG Y+C V+N +G ++ + L V P P Q + F V
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
C NP + V+W KD + + ++ L V + +G Y C N +
Sbjct: 329 CQYTGNP-IKTVSWMKDGKAIGHSES---------VLRIESVKKEDKGMYQCFVRNDRES 378
Query: 138 QGSSGQMEV 146
+S ++++
Sbjct: 379 AEASAELKL 387
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 42/260 (16%)
Query: 3 TKVGSLETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEFP 56
T VG + I DG LV P ++D + +Y C N G + ++
Sbjct: 44 TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 103
Query: 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTF-----QYVTW-TKDKRLLEPYQTKD--IVV 108
+++ V++C I P+F + V+W T ++ P D +V
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLI---PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 160
Query: 109 MQNGSLLFTRVN-QNHQGRYTC-TPYNAHG-TQGSSGQMEVLVRKP--------PAFTIK 157
+ +G L V ++ Y C T + G T+ S+ + +++ +P PA K
Sbjct: 161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220
Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITW-------QRRDGVALPKNRVKIVGGNIT 210
P + V ++ + C AQ G P+ W R+ V L +RVK V G +
Sbjct: 221 PLELM---VAHTISLLCPAQ---GFPAPSFRWYKFIEGTTRKQAVVL-NDRVKQVSGTLI 273
Query: 211 IEGLRRVDFGYYECVVSNEV 230
I+ D G Y CVV+N V
Sbjct: 274 IKDAVVEDSGKYLCVVNNSV 293
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 12/156 (7%)
Query: 84 PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143
P+F++ + + + D V +G+L+ G+Y C N+ G G S +
Sbjct: 242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG--GESVE 299
Query: 144 MEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK 203
+ V P + I P G C+ G T++W + DG A+ +
Sbjct: 300 TVLTVTAPLSAKIDPPTQ-TVDFGRPAVFTCQYT---GNPIKTVSWMK-DGKAIGHSE-- 352
Query: 204 IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
+ IE +++ D G Y+C V N+ + +A+L
Sbjct: 353 ---SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQ 77
GTL+I +DSG Y+C V+N +G ++ + L V P P Q + F V
Sbjct: 276 GTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 334
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
C NP + V+W KD + + ++ L V + +G Y C N +
Sbjct: 335 CQYTGNP-IKTVSWMKDGKAIGHSES---------VLRIESVKKEDKGMYQCFVRNDRES 384
Query: 138 QGSSGQMEV 146
+S ++++
Sbjct: 385 AEASAELKL 393
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 42/260 (16%)
Query: 3 TKVGSLETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEFP 56
T VG + I DG LV P ++D + +Y C N G + ++
Sbjct: 50 TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 109
Query: 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTF-----QYVTW-TKDKRLLEPYQTKD--IVV 108
+++ V++C I P+F + V+W T ++ P D +V
Sbjct: 110 QYYEADVNKEHVIRGNSAVIKCLI---PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 166
Query: 109 MQNGSLLFTRVN-QNHQGRYTC-TPYNAHG-TQGSSGQMEVLVRKP--------PAFTIK 157
+ +G L V ++ Y C T + G T+ S+ + +++ +P PA K
Sbjct: 167 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 226
Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITW-------QRRDGVALPKNRVKIVGGNIT 210
P + V ++ + C AQ G P+ W R+ V L +RVK V G +
Sbjct: 227 PLELM---VAHTISLLCPAQ---GFPAPSFRWYKFIEGTTRKQAVVL-NDRVKQVSGTLI 279
Query: 211 IEGLRRVDFGYYECVVSNEV 230
I+ D G Y CVV+N V
Sbjct: 280 IKDAVVEDSGKYLCVVNNSV 299
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 12/156 (7%)
Query: 84 PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143
P+F++ + + + D V +G+L+ G+Y C N+ G G S +
Sbjct: 248 PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG--GESVE 305
Query: 144 MEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK 203
+ V P + I P G C+ G T++W + DG A+ +
Sbjct: 306 TVLTVTAPLSAKIDPPTQ-TVDFGRPAVFTCQYT---GNPIKTVSWMK-DGKAIGHSE-- 358
Query: 204 IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
+ IE +++ D G Y+C V N+ + +A+L
Sbjct: 359 ---SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 71 RLQGVVQ--CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR-- 126
R+ GV C + +P V W K+ + + Q++ V+ Q G + R+ GR
Sbjct: 21 RVGGVASFYCAARGDPPPSIV-WRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 79
Query: 127 --YTCTPYNAHGTQGSSGQMEVLV---RKPPAFTIKPEAMYQR--KVGESVDMHCEAQEA 179
Y C N G S+ + + P F + + R +VG +V M C+A
Sbjct: 80 APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAI-- 137
Query: 180 EGTQKPTITW-QRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
G P I W + + V + R + G + IE R D G YECV N + T
Sbjct: 138 -GNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT 190
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 20 LVINPV--GSDDSGLYMCEVSNGIGEPQAAQAYLNV--------EFPAKVTFTPTVQYLP 69
L I PV G DD+ Y C NG+G+ +A A L + FP +T P + +
Sbjct: 68 LRIEPVRAGRDDA-PYECVAENGVGDAVSADATLTIYEGDKTPAGFPV-ITQGPGTRVIE 125
Query: 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
++ C NPT + W K++ ++ + +++G L + QG+Y C
Sbjct: 126 VGHTVLMTCKAIGNPTPN-IYWIKNQTKVD--MSNPRYSLKDGFLQIENSREEDQGKYEC 182
Query: 130 TPYNAHGTQGSSG-QMEVLVRK-PPAFT 155
N+ GT+ S + V VR+ PP F+
Sbjct: 183 VAENSMGTEHSKATNLYVKVRRVPPTFS 210
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 71 RLQGVVQ--CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR-- 126
R+ GV C + +P V W K+ + + Q++ V+ Q G + R+ GR
Sbjct: 19 RVGGVASFYCAARGDPPPSIV-WRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 77
Query: 127 --YTCTPYNAHGTQGSSGQMEVLV---RKPPAFTIKPEAMYQR--KVGESVDMHCEAQEA 179
Y C N G S+ + + P F + + R +VG +V M C+A
Sbjct: 78 APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAI-- 135
Query: 180 EGTQKPTITW-QRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
G P I W + + V + R + G + IE R D G YECV N + T
Sbjct: 136 -GNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT 188
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 20 LVINPV--GSDDSGLYMCEVSNGIGEPQAAQAYLNV--------EFPAKVTFTPTVQYLP 69
L I PV G DD+ Y C NG+G+ +A A L + FP +T P + +
Sbjct: 66 LRIEPVRAGRDDA-PYECVAENGVGDAVSADATLTIYEGDKTPAGFPV-ITQGPGTRVIE 123
Query: 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
++ C NPT + W K++ ++ + +++G L + QG+Y C
Sbjct: 124 VGHTVLMTCKAIGNPTPN-IYWIKNQTKVD--MSNPRYSLKDGFLQIENSREEDQGKYEC 180
Query: 130 TPYNAHGTQGSSG-QMEVLVRK 150
N+ GT+ S + V VR+
Sbjct: 181 VAENSMGTEHSKATNLYVKVRR 202
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 92/245 (37%), Gaps = 24/245 (9%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSG---LYMCEVSNGIGEPQAAQAYLNVEFPAK 58
N V + R+ DG L V +D Y+C N + + ++ K
Sbjct: 145 NADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTK 204
Query: 59 ----VTFTPTVQYLPFRLQG------VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV 108
P QY+ + ++ C +NP Y + K+ + + +D +
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP-MGYPNYFKNGKDVNG-NPEDRIT 262
Query: 109 MQNGS----LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR 164
N + LLF +G YTC N G + +++ V P + KPE +
Sbjct: 263 RHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG-KPQKHSLKLTVVSAPKYEQKPEKVIVV 321
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYEC 224
K G+ V + C+ G P + W + L R + + I+G++ D GYY C
Sbjct: 322 KQGQDVTIPCKVT---GLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVKNGDKGYYGC 377
Query: 225 VVSNE 229
+NE
Sbjct: 378 RATNE 382
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 28 DDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV-VQCHIKANPTF 86
+D G+Y CEV NG+G+PQ L V K P + + Q V + C + P
Sbjct: 280 EDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP 339
Query: 87 QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138
V W+ + + L + + + L+ V +G Y C N HG +
Sbjct: 340 N-VVWSHNAKPL----SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK 386
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 73/208 (35%), Gaps = 28/208 (13%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
V++C I+ N +W KD + + + GSL+F R + +G Y C
Sbjct: 25 VLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP 84
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
G S V+ + P +++ E + KP ITW++R
Sbjct: 85 AGVASS----RVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLS 140
Query: 195 VALPKNRVKIVGGNITIEGLRRVDFG-----YYECVVSNEVATIVQ----AAQLVVEGTQ 245
A P V + RR+ G Y+ V +V+ I + A V+
Sbjct: 141 GADPNADV--------TDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV 192
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGP 273
Y I GV + S GY G P
Sbjct: 193 VLVEYEIKGVTKDNS-------GYKGEP 213
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 16/197 (8%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
G ETR+ +DG L + P +DSG Y+C N L V F F P +
Sbjct: 70 GEEETRM-WAQDGALWLLPALQEDSGTYVCTTRNA-SYCDKMSIELRV-FENTDAFLPFI 126
Query: 66 QY---LPFRLQGVVQC----HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR 118
Y L GV+ C + T + W KD LL+ K + V LL
Sbjct: 127 SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHD 186
Query: 119 VNQNHQGRYTCTPYNAHGTQ--GSSGQMEVLVRKPPAFT----IKPEAMYQRKVGESVDM 172
V G Y C AH Q + +E+ ++K T I P +G + +
Sbjct: 187 VALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTI 246
Query: 173 HCEAQEAEGTQKPTITW 189
C+ GT T+ W
Sbjct: 247 PCKVFLGTGTPLTTMLW 263
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 34/195 (17%)
Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316
T+ SVTL W P G +NY++ RE K + + T T +++L +Y
Sbjct: 18 TKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTV-ATNCHKTSWKVDQLQEGCSYY 76
Query: 317 FQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSVTEVN-NGFVISWQPP-LERASLIQY 374
F+V+ +NE G G+ + +++ +V N +SW+ P + S I
Sbjct: 77 FRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILG 136
Query: 375 YLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP 432
Y+++ +T GS W T ++ T+ TI L
Sbjct: 137 YIVEMQTKGSDKWATCATVKV-----------------------------TEATITGLIQ 167
Query: 433 ATTYEFQVVGKNELG 447
Y F+V +NE G
Sbjct: 168 GEEYSFRVSAQNEKG 182
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 221 YYECVVSNE--VATIVQAAQLVVEGTQPHAPYNITGV-ATEFSVTLEW-LPGYSGGPDLK 276
Y+ + NE + + A+ V +P P IT + T SV+L W P + GG +
Sbjct: 76 YFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRI- 134
Query: 277 QNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
Y++ + +G+ W T+ TI L Y F+V +NE G
Sbjct: 135 LGYIVEMQTKGSDKWATCATVK--VTEATITGLIQGEEYSFRVSAQNEKG 182
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 100/257 (38%), Gaps = 33/257 (12%)
Query: 15 KKDGTLVINPVG----SDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
++ GTLVI+ + G Y C N G + + L V +K P P
Sbjct: 70 RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV---SKSPLWPKENLDPV 126
Query: 71 RLQGVVQCHIKANPT----FQYVTWTKDKRLLEPY-QTKDIVVMQNGSLLFTRVN-QNHQ 124
+Q ++ NP + W +EP Q K + NG L F+ V Q+ Q
Sbjct: 127 VVQEGAPLTLQCNPPPGLPSPVIFWMSSS--MEPITQDKRVSQGHNGDLYFSNVMLQDMQ 184
Query: 125 GRYTCTPYNAHGT----QGSSGQMEVL-----VRKPPAFTIKPEAMYQRKVGESVDMHCE 175
Y+C H T Q + ++VL + P+F + V +D+ E
Sbjct: 185 TDYSCN-ARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243
Query: 176 AQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATI 233
A G P I W ++ G LP ++ K N + I + D G Y C+ SN++ +I
Sbjct: 244 CI-ASGVPTPDIAWYKKGG-DLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI 301
Query: 234 VQAAQLVVEGTQPHAPY 250
+ V+ APY
Sbjct: 302 RHTISVRVKA----APY 314
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 246 PHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
P AP ++ V ++ F V L W P ++ Q + +++ +G+ + T PGS Q
Sbjct: 18 PSAPRDVVPVLVSSRF-VRLSWRPPAEAKGNI-QTFTVFFSREGDNRERALNTTQPGSLQ 75
Query: 304 ITINRLTPATTYEFQVVGKNELGDG 328
+T+ L P Y F+VV NE G G
Sbjct: 76 LTVGNLKPEAMYTFRVVAYNEWGPG 100
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 26/115 (22%)
Query: 347 RNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
R+V V++ FV +SW+PP E IQ + + + S G+ R
Sbjct: 22 RDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFF-------------------SREGDNR 62
Query: 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
E+ + T PGS Q+T+ L P Y F+VV NE G G S + V T+
Sbjct: 63 ERA------LNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ 111
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 4 KVGSLETRVVIKKDGT---LVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNVE----- 54
KV S V+ DG L I P+ D +Y C +N +GE + +E
Sbjct: 46 KVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLP 105
Query: 55 --FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IVVMQN 111
FP+ + P ++ + + C NP + ++W KD ++P + I +++
Sbjct: 106 PGFPS-IDMGPQLKVVEKARTATMLCAAGGNPDPE-ISWFKDFLPVDPATSNGRIKQLRS 163
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSS-GQMEVLVRK 150
G+L ++ QG+Y C N+ GT+ S+ + V VR+
Sbjct: 164 GALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRR 203
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN----QNHQGRYTCTPYN 133
C P + +TW K + + Q +++ +G+ R+ Q + Y CT N
Sbjct: 28 CQATGEPKPR-ITWMKKGKKVS-SQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATN 85
Query: 134 AHGTQGSSGQMEVLVRK--PPAF---TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
+ G +S ++ VL + PP F + P+ K + M C A G P I+
Sbjct: 86 SLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKA-RTATMLCAAG---GNPDPEIS 141
Query: 189 WQRRDGV----ALPKNRVK-IVGGNITIEGLRRVDFGYYECVVSNEVAT 232
W +D + A R+K + G + IE D G YECV +N T
Sbjct: 142 W-FKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 189
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIV------GGNITIEGLR-RVDFGYYECVVSNEV 230
+A G KP ITW ++ G + R +++ G + I+ LR + D YEC +N +
Sbjct: 29 QATGEPKPRITWMKK-GKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSL 87
Query: 231 ATIVQAAQLVV---EGTQPHAPYNITG---VATEFSVTLEWLPGYSGGPDLKQNYVIWYR 284
I +A+L V E P P G E + T L G PD + + W+
Sbjct: 88 GEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPE---ISWF- 143
Query: 285 EQGNKDWLPI-PVTPPG 300
KD+LP+ P T G
Sbjct: 144 ----KDFLPVDPATSNG 156
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
++W ++ +L+E + K I+ N L + + G Y C N G ++V V
Sbjct: 36 ISWFRNGKLIEENE-KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 94
Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR-DGVALPK------NR 201
+P +K E Y+ V + C+A EG P ITW+R DG + R
Sbjct: 95 -QPHIIQLKNETTYENG---QVTLVCDA---EGEPIPEITWKRAVDGFTFTEGDKSLDGR 147
Query: 202 VKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+++ G ++ I+ ++ D G Y+C ++ + ++ L +E
Sbjct: 148 IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 7 SLETRVVIKK---DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
SL+ R+ +K +L I V DSG Y CE ++ IG Q + YL++E
Sbjct: 143 SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM-YLDIE 192
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 21/169 (12%)
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN----QNHQGRYTCTPYN 133
C P + +TW K + + Q +++ +G+ R+ Q + Y CT N
Sbjct: 29 CQATGEPKPR-ITWMKKGKKVS-SQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATN 86
Query: 134 AHGTQGSSGQMEVLVRKP-----PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
+ G +S ++ VL P + P+ K G + M C A G P I+
Sbjct: 87 SLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEK-GRTATMLCAAG---GNPDPEIS 142
Query: 189 WQRRDGV----ALPKNRVK-IVGGNITIEGLRRVDFGYYECVVSNEVAT 232
W +D + A R+K + G + IE D G YECV +N T
Sbjct: 143 W-FKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 190
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 4 KVGSLETRVVIKKDGT---LVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNVE----- 54
KV S V+ DG L I P+ D +Y C +N +GE + +E
Sbjct: 47 KVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLP 106
Query: 55 --FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IVVMQN 111
FP + P ++ + + C NP + ++W KD ++P + I +++
Sbjct: 107 SGFPT-IDMGPQLKVVEKGRTATMLCAAGGNPDPE-ISWFKDFLPVDPAASNGRIKQLRS 164
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
G+L ++ QG+Y C N+ GT+ S+
Sbjct: 165 GALQIESSEESDQGKYECVATNSAGTRYSA 194
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 22/130 (16%)
Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIV------GGNITIEGLR-RVDFGYYECVVSNEV 230
+A G KP ITW ++ G + R +++ G + I+ LR + D YEC +N +
Sbjct: 30 QATGEPKPRITWMKK-GKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSL 88
Query: 231 ATIVQAAQL-VVEGTQPHAPYNITGVATEFSV-----TLEWLPGYSGGPDLKQNYVIWYR 284
I +A+L V+E Q + + + + V T L G PD + + W+
Sbjct: 89 GEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPE---ISWF- 144
Query: 285 EQGNKDWLPI 294
KD+LP+
Sbjct: 145 ----KDFLPV 150
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 75/205 (36%), Gaps = 31/205 (15%)
Query: 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNGSLL 115
K+ P + FR C NPT ++W K+ R + + Q SL+
Sbjct: 131 KLLAVPAANTVRFR------CPAAGNPT-PSISWLKNGREFRGEHRIGGIKLRHQQWSLV 183
Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIKPEAMYQRKVGESVDMH 173
V + +G YTC N G+ + ++VL R P P A +G V+ H
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 243
Query: 174 CEAQEAEGTQKPTITWQRRDGVALPK---------NRVKIVGGNITIEGLRRV------- 217
C+ +P I W + V K +K G N T + L +
Sbjct: 244 CKVYS---DAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTF 300
Query: 218 -DFGYYECVVSNEVATIVQAAQLVV 241
D G Y C+ N + +A LVV
Sbjct: 301 EDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 32/181 (17%)
Query: 157 KPEAMYQRKVG----ESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG----- 207
+PE M ++ + +V C A G P+I+W + ++R+ GG
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAA---GNPTPSISWLKNGREFRGEHRI---GGIKLRH 177
Query: 208 ---NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLE 264
++ +E + D G Y CVV N+ +I Q L V PH P G+ + L
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL- 236
Query: 265 WLPGYSGGPDLKQNYVIWYREQGNKDWLP------IPVTPPGSTQITINRLTPATTYEFQ 318
G D++ + ++ Q + WL V P G+ +T+ + A T + +
Sbjct: 237 -------GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKE 289
Query: 319 V 319
+
Sbjct: 290 L 290
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 158 PEAMYQR----KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-----VKIVGGN 208
PE M ++ ++V C + GT +PT+ W + P +R V+ +
Sbjct: 18 PEKMEKKLHAVPAAKTVKFKCPSS---GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWS 74
Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
I ++ + D G Y C+V NE +I QL V PH P G+ +V L
Sbjct: 75 IIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL 129
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 22/148 (14%)
Query: 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIKPEAMYQRKVGESV 170
S++ V + +G YTC N +G+ + Q++V+ R P P A +G +V
Sbjct: 74 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNV 133
Query: 171 DMHCEAQEAEGTQKPTITWQRR---DGVAL-PKNR-----VKIVGGNIT-----IEGLRR 216
+ C+ +P I W + +G + P N +K G N T + LR
Sbjct: 134 EFMCKVY---SDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRN 190
Query: 217 VDF---GYYECVVSNEVATIVQAAQLVV 241
V F G Y C+ N + +A L V
Sbjct: 191 VSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 158 PEAMYQR----KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-----VKIVGGN 208
PE M ++ ++V C + GT +PT+ W + P +R V+ +
Sbjct: 19 PEKMEKKLHAVPAAKTVKFKCPSS---GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWS 75
Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
I ++ + D G Y C+V NE +I QL V PH P G+ +V L
Sbjct: 76 IIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL 130
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 22/148 (14%)
Query: 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIKPEAMYQRKVGESV 170
S++ V + +G YTC N +G+ + Q++V+ R P P A +G +V
Sbjct: 75 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNV 134
Query: 171 DMHCEAQEAEGTQKPTITWQRR---DGVAL-PKNR-----VKIVGGNIT-----IEGLRR 216
+ C+ +P I W + +G + P N +K G N T + LR
Sbjct: 135 EFMCKVY---SDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRN 191
Query: 217 VDF---GYYECVVSNEVATIVQAAQLVV 241
V F G Y C+ N + +A L V
Sbjct: 192 VSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 158 PEAMYQR----KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-----VKIVGGN 208
PE M ++ ++V C + GT PT+ W + P +R V+ +
Sbjct: 18 PEKMEKKLHAVPAAKTVKFKCPSS---GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWS 74
Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
I ++ + D G Y C+V NE +I QL V PH P G+ +V L
Sbjct: 75 IIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL 129
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 27/180 (15%)
Query: 83 NPTFQYVTWTKDKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140
NPT + W K+ + +P V S++ V + +G YTC N +G+
Sbjct: 45 NPTLR---WLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 141 SGQMEVLVRKP--PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR---DGV 195
+ Q++V+ R P P A +G +V+ C+ +P I W + +G
Sbjct: 102 TYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY---SDPQPHIQWLKHIEVNGS 158
Query: 196 AL-PKNR-----VKIVGGNIT-----IEGLRRVDF---GYYECVVSNEVATIVQAAQLVV 241
+ P N +K G N T + LR V F G Y C+ N + +A L V
Sbjct: 159 KIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 249 PYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN 307
P NIT +VTL+W P Y+GG + +Y++ R+ N WL + + T++
Sbjct: 19 PLNIT----RHTVTLKWAKPEYTGGFKIT-SYIVEKRDLPNGRWLKANFSNILENEFTVS 73
Query: 308 RLTPATTYEFQVVGKNELG 326
LT YEF+V+ KN G
Sbjct: 74 GLTEDAAYEFRVIAKNAAG 92
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
SY+ E R+ N WL + + T++ LT YEF+V+ KN G
Sbjct: 44 SYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAG 92
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---- 205
+PP F +P + ++G S + +A G KP +TW ++ G + R + +
Sbjct: 5 EPPRFIKEP----KDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVNSQRFETIEFDE 59
Query: 206 --GGNITIEGLRR-VDFGYYECVVSNEVATIVQAAQLVV--EGTQPHAPYNITG----VA 256
G + I+ LR D YECV N V I A+L V E P NI
Sbjct: 60 SAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV 119
Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
E + T L SG PD + + W+ KD+LP+
Sbjct: 120 VERTRTATMLCAASGNPDPE---ITWF-----KDFLPV 149
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 29 DSGLYMCEVSNGIGEPQAAQAYLNV----EFPA---KVTFTPTVQYLPFRLQGVVQCHIK 81
D +Y C N +GE A L V + P+ + P ++ + + C
Sbjct: 75 DENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 82 ANPTFQYVTWTKDKRLLEPYQTK-DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140
NP + +TW KD ++P + I +++G+L + QG+Y C N+ G + S
Sbjct: 134 GNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS 192
Query: 141 S 141
S
Sbjct: 193 S 193
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 179 AEGTQKPTITWQRRDGVALPK---NRVK-IVGGNITIEGLRRVDFGYYECVVSN 228
A G P ITW + P R+K + G + IE D G YECV +N
Sbjct: 132 ASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 243 GTQPHAPYNITG--VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
G P AP ++ V+T F + L W S Y ++Y ++G + PG
Sbjct: 15 GPLPSAPRDVVASLVSTRF-IKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPG 73
Query: 301 STQITINRLTPATTYEFQVVGKNELGDG 328
Q+TI L PAT Y F+V+ +N+ G G
Sbjct: 74 EMQVTIQNLMPATVYIFRVMAQNKHGSG 101
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
PG Q+TI L PAT Y F+V+ +N+ G G S + V+T+
Sbjct: 72 PGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ 112
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---- 205
+PP F +P + ++G S + +A G KP +TW ++ G + R + +
Sbjct: 5 EPPRFIKEP----KDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVNSQRFETIEFDE 59
Query: 206 --GGNITIEGLRR-VDFGYYECVVSNEVATIVQAAQLVV--EGTQPHAPYNITG----VA 256
G + I+ LR D YECV N V I A+L V E P NI
Sbjct: 60 SAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV 119
Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
E + T L SG PD + + W+ KD+LP+
Sbjct: 120 VERTRTATMLCAASGNPDPE---ITWF-----KDFLPV 149
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 29 DSGLYMCEVSNGIGEPQAAQAYLNV----EFPA---KVTFTPTVQYLPFRLQGVVQCHIK 81
D +Y C N +GE A L V + P+ + P ++ + + C
Sbjct: 75 DENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 82 ANPTFQYVTWTKDKRLLEPYQTK-DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140
NP + +TW KD ++P + I +++G+L + QG+Y C N+ G + S
Sbjct: 134 GNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS 192
Query: 141 S-GQMEVLVRK 150
S + V VR+
Sbjct: 193 SPANLYVRVRR 203
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
G+ + R+ + DGTL V D+G+Y C VSN +G A+ A LNV
Sbjct: 385 GAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTAS-ATLNV 431
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP----KNRVKIVG-GNIT 210
++P A G + ++ C A T +++W +G + K R+ ++ G +
Sbjct: 345 VEPPADLNVTEGMAAELKCRA----STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 211 IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
+ D G Y C+VSN V +A L V GT
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGT 434
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 106 IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
I V+ +G+L FT V G YTC N+ G +S + V
Sbjct: 391 IAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGN 208
+P A+ + P GES+++ C ++A I+W +DGV L P NR ++G
Sbjct: 7 QPEAYVVAP--------GESLELQCMLKDA-----AVISW-TKDGVHLGPNNRTVLIGEY 52
Query: 209 ITIEGLRRVDFGYYECVVSNEV 230
+ I+G D G Y C + V
Sbjct: 53 LQIKGATPRDSGLYACTAARTV 74
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
Query: 181 GTQKPTITWQR-RDGVALPKNRVKIVGGNITI----EGLRRVDFGYYECVVSNEVATIVQ 235
G P ITWQ+ +D + + IV + T G+ R D G+Y N +
Sbjct: 130 GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK 189
Query: 236 AAQL-VVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
+L V + P ++ V+ + SV L W S G NY++ + WL
Sbjct: 190 TVELDVADVPDPPRGVKVSDVSRD-SVNLTWTEPASDGGSKITNYIVEKCATTAERWLR- 247
Query: 295 PVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
V T+ T+ L T+Y+F+V+ +N+ G
Sbjct: 248 -VGQARETRYTVINLFGKTSYQFRVIAENKFG 278
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 48/282 (17%)
Query: 181 GTQKPTITWQRR------DGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV 234
G KP + W R+ DG+ K + I + D Y+ +N+ ++
Sbjct: 30 GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 89
Query: 235 QAAQLVVE-GTQPHAPYNITGVATEFSVTLEWLP---GYSGGPDLKQNYVIWYREQG--- 287
A L VE + H P + G+ ++ E + +SG PD + W + Q
Sbjct: 90 GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD---PVITWQKGQDLID 146
Query: 288 NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXR 347
N + VT ++ + N + + V KN G + R
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG---IDQKTVELDVADVPDPPR 203
Query: 348 NVSVTEVNNGFV-ISW-QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
V V++V+ V ++W +P + S I Y+++ + + L GQ R
Sbjct: 204 GVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR----------- 252
Query: 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
T+ T+ L T+Y+F+V+ +N+ G
Sbjct: 253 ----------------ETRYTVINLFGKTSYQFRVIAENKFG 278
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 143 QMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV 202
Q+ VL R P T E +GES+++ C A G P I W + + + + +
Sbjct: 2 QLTVLERVAPTITGNLENQTT-SIGESIEVSCTAS---GNPPPQIMWFKDNETLVEDSGI 57
Query: 203 KIVGGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
+ GN +TI +R+ D G Y C + + A ++EG Q
Sbjct: 58 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT 314
A+ S+T+ W SG ++ QNY ++Y E+G + V+ S TIN L T
Sbjct: 28 AASPTSITVTWETPVSGNGEI-QNYKLYYMEKGTDKEQDVDVS---SHSYTINGLKKYTE 83
Query: 315 YEFQVVGKNELGDGM 329
Y F+VV N+ G G+
Sbjct: 84 YSFRVVAYNKHGPGV 98
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
Y E+G + V+ S TIN L T Y F+VV N+ G G+ + V V+T
Sbjct: 55 YMEKGTDKEQDVDVS---SHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 107
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 25/144 (17%)
Query: 20 LVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---------------EFPAKVTFTPT 64
L+ N V D+G Y+C V+N + + L+V E ++ PT
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT 126
Query: 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
Q L V+QC +P Y W K++ L ++TK + + V+ HQ
Sbjct: 127 SQKLMPGSTLVLQCVAVGSPIPHY-QWFKNELPLT-HETKKL-------YMVPYVDLEHQ 177
Query: 125 GRYTCTPYNAHGTQGSSGQMEVLV 148
G Y C YN +Q S ++E+++
Sbjct: 178 GTYWCHVYNDRDSQDSK-KVEIII 200
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 246 PHAP-YNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGS 301
PHAP + + ++T ++ L W + G L + Y++ E N W + + P +
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIR-YILEMSEN-NAPWTVLLASVDPKA 75
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLS 331
T +T+ L PA +Y+F++ N++G G S
Sbjct: 76 TSVTVKGLVPARSYQFRLCAVNDVGKGQFS 105
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452
P +T +T+ L PA +Y+F++ N++G G S
Sbjct: 73 PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFS 105
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
+L V ++ QG YTC + T+ +S + V + AF E++ + VGE V
Sbjct: 160 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVR 219
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231
+ + G P I W ++G+ L N G +TI + D G Y +++N ++
Sbjct: 220 I---PAKYLGYPPPEIKWY-KNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPIS 275
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 24/86 (27%)
Query: 163 QRKVGESVDMHCEAQEAEGTQKPTITW------------QRRDGVALPKNRVKI------ 204
QR VG SV++HCEA G+ P I W Q DG L +RV I
Sbjct: 32 QRWVGGSVELHCEAV---GSPVPEIQWWFEGQGPNDICSQLWDGARL--DRVHIHATYHQ 86
Query: 205 -VGGNITIEGLRRVDFGYYECVVSNE 229
I+I+ L D G YEC SN+
Sbjct: 87 HAASTISIDTLVEEDTGTYECRASND 112
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 86/223 (38%), Gaps = 36/223 (16%)
Query: 43 EPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD-KRLLEP 100
EP+ A + N E K + P + FR C NP W K+ K +
Sbjct: 3 EPEGAPYWTNTEKXEKRLHAVPAANTVKFR------CPAGGNPX-PTXRWLKNGKEFKQE 55
Query: 101 YQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIK 157
++ V Q+ SL+ V + +G YTC N +G+ + ++V+ R P P
Sbjct: 56 HRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAG 115
Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR----------DGVALPKNRV-KIVG 206
A VG V+ C+ +P I W + DG LP +V K G
Sbjct: 116 LPANASTVVGGDVEFVCKVYS---DAQPHIQWIKHVEKNGSKYGPDG--LPYLKVLKAAG 170
Query: 207 GNIT---IEGL--RRVDF---GYYECVVSNEVATIVQAAQLVV 241
N T IE L R V F G Y C+ N + +A L V
Sbjct: 171 VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGG--------NITIEGLRRVDFGYYECVVSNEV 230
A G PT W + ++R+ GG ++ E + D G Y CVV NE
Sbjct: 35 AGGNPXPTXRWLKNGKEFKQEHRI---GGYKVRNQHWSLIXESVVPSDKGNYTCVVENEY 91
Query: 231 ATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
+I L V PH P G+ S +
Sbjct: 92 GSINHTYHLDVVERSPHRPILQAGLPANASTVV 124
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQA 49
+T+ S + V+ G LV +P+ + D+G Y CE NG G P + A
Sbjct: 155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNA 202
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVS----NGIGEPQAAQAYLNVEFPA 57
N S E RV G + V +D+G Y C VS N GE + L P+
Sbjct: 53 NKITASYEDRVTFLPTG-ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP--PS 109
Query: 58 KVTFT-PTVQYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---- 111
K T P+ + R V+ C + +P +Y TW KD ++ P K N
Sbjct: 110 KPTVNIPSSATIGNR--AVLTCSEQDGSPPSEY-TWFKDG-IVMPTNPKSTRAFSNSSYV 165
Query: 112 -----GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
G L+F ++ + G Y+C N +GT +S + +
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 20/156 (12%)
Query: 104 KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMY- 162
+D V + F V + G YTC G +++++V PP+ KP
Sbjct: 60 EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPS---KPTVNIP 116
Query: 163 -QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR------------VKIVGGNI 209
+G + C Q +G+ TW +DG+ +P N + G +
Sbjct: 117 SSATIGNRAVLTCSEQ--DGSPPSEYTW-FKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL 173
Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
+ L D G Y C N T + + + +E +
Sbjct: 174 VFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 11 RVVIKKDGT---LVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
RVV++K+G L I +D+G+Y C+ ++ G+ Q A L E K+TF V
Sbjct: 48 RVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL--EIYQKLTFREVVSP 105
Query: 68 LPFRL--QGVVQCHIKANPT 85
F+ V C + ++P
Sbjct: 106 QEFKQGEDAEVVCRVSSSPA 125
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 60/164 (36%), Gaps = 13/164 (7%)
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR----YTCTPYN 133
C +P + VTW K + + + + I ++ + R+ R Y C N
Sbjct: 28 CQATGDPKPR-VTWNKKGKKVNSQRFETIEFDESAGAVL-RIQPLRTPRDENIYECVAQN 85
Query: 134 AHGTQGSSGQMEVLVRK--PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
HG ++ VL PP F + Q KV E A G P ITW +
Sbjct: 86 PHGEVTVHAKLTVLREDQLPPGFP-NIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK 144
Query: 192 RDGVALPKN---RVK-IVGGNITIEGLRRVDFGYYECVVSNEVA 231
P R+K + G + IE D G YECV SN
Sbjct: 145 DFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAG 188
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 26/157 (16%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----- 205
PP F KP ++G S + +A G KP +TW ++ G + R + +
Sbjct: 6 PPVFIKKP----VDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVNSQRFETIEFDES 60
Query: 206 -GGNITIEGLRR-VDFGYYECVVSNEVATIVQAAQLVV--EGTQPHAPYNITG----VAT 257
G + I+ LR D YECV N + A+L V E P NI
Sbjct: 61 AGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVV 120
Query: 258 EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
E + T L SG PD + + W+ KD+LP+
Sbjct: 121 ERTRTATMLCAASGNPDPE---ITWF-----KDFLPV 149
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 29 DSGLYMCEVSNGIGEPQAAQAYLNV--------EFPAKVTFTPTVQYLPFRLQGVVQCHI 80
D +Y C N GE A L V FP + P ++ + + C
Sbjct: 75 DENIYECVAQNPHGE-VTVHAKLTVLREDQLPPGFP-NIDMGPQLKVVERTRTATMLCAA 132
Query: 81 KANPTFQYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139
NP + +TW KD ++P + I +++G L + QG+Y C N+ G +
Sbjct: 133 SGNPDPE-ITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAGVRY 191
Query: 140 SS 141
SS
Sbjct: 192 SS 193
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 24/86 (27%)
Query: 163 QRKVGESVDMHCEAQEAEGTQKPTITW------------QRRDGVALPKNRVKI------ 204
QR VG SV++HCEA G+ P I W Q DG L +RV I
Sbjct: 32 QRWVGGSVELHCEAV---GSPVPEIQWWFEGQGPNDIXSQLWDGARL--DRVHIHATYHQ 86
Query: 205 -VGGNITIEGLRRVDFGYYECVVSNE 229
I+I+ L D G YEC SN+
Sbjct: 87 HAASTISIDTLVEEDTGTYECRASND 112
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
S R+ + DGTL + V D+G+Y C V+N G A+ AYLNV
Sbjct: 395 ASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNAS-AYLNVS 442
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 20/149 (13%)
Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIKPEAMYQRKVG 167
Q+ SL+ V + +G YTC N +G+ + ++V+ R P P A VG
Sbjct: 74 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVG 133
Query: 168 ESVDMHCEAQEAEGTQKPTITWQRR----------DGVALPK--NRVKIVGGNITIEGLR 215
V+ C+ +P I W + DG+ K I N + L
Sbjct: 134 GDVEFVCKVY---SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 216 RV---DFGYYECVVSNEVATIVQAAQLVV 241
V D G Y C VSN + Q+A L V
Sbjct: 191 NVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGG--------NITIEGLRRVDFGYYECVVSNEV 230
A G PT+ W + ++R+ GG ++ +E + D G Y CVV NE
Sbjct: 43 AGGNPMPTMRWLKNGKEFKQEHRI---GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEY 99
Query: 231 ATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
+I L V PH P G+ S +
Sbjct: 100 GSINHTYHLDVVERSPHRPILQAGLPANASTVV 132
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF--TPTVQYLPFRLQGV 75
TL I DD+G+Y C V+ G ++A +NV+ K+ F PT Q V
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDG--TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 76 VQCHIKAN--PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
+ C + ++ PT + W R + + +V+ N L + + +G Y C
Sbjct: 120 IVCDVVSSLPPT---IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 4 KVGSLETRVVIKKDGT---LVINPVGS-DDSGLYMCEVSNGIGEPQAA-------QAYLN 52
KV + V+ DG+ L I P+ + D +Y C SN +GE + + +
Sbjct: 46 KVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIP 105
Query: 53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY----QTKDIVV 108
FP + P ++ + + C NP + +TW KD ++ + K +
Sbjct: 106 RGFPT-IDMGPQLKVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDTSNNNGRIKQLRS 163
Query: 109 MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
G+L + ++ QG+Y C N+ GT+ S+
Sbjct: 164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 77/212 (36%), Gaps = 29/212 (13%)
Query: 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS 113
E P + T TP Q C +P + V W K + + Q +++ +GS
Sbjct: 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIV-WNKKGKKVS-NQRFEVIEFDDGS 61
Query: 114 LLFTRVNQNHQGR----YTCTPYNAHGTQGSSGQMEVLV-----RKPPAFTIKPEAMYQR 164
R+ R Y C N G S ++ VL R P + P Q
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGP----QL 117
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN------RVKIVG----GNITIEGL 214
KV E A G P ITW + LP + R+K + G + IE
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKD---FLPVDTSNNNGRIKQLRSESIGALQIEQS 174
Query: 215 RRVDFGYYECVVSNEVATIVQA-AQLVVEGTQ 245
D G YECV +N T A A L V GT+
Sbjct: 175 EESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 24/152 (15%)
Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIKPEAMYQRKVG 167
Q+ SL+ V + +G YTC N +G+ + ++V+ R P P A VG
Sbjct: 66 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVG 125
Query: 168 ESVDMHCEAQEAEGTQKPTITWQRR----------DGVALPKNRVKIVGGNIT---IEGL 214
V+ C+ +P I W + DG+ K +K G N T IE L
Sbjct: 126 GDVEFVCKVYS---DAQPHIQWIKHVEKNGSKYGPDGLPYLK-VLKAAGVNTTDKEIEVL 181
Query: 215 --RRVDF---GYYECVVSNEVATIVQAAQLVV 241
R V F G Y C+ N + +A L V
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGG--------NITIEGLRRVDFGYYECVVSNEV 230
A G PT+ W + ++R+ GG ++ +E + D G Y CVV NE
Sbjct: 35 AGGNPMPTMRWLKNGKEFKQEHRI---GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEY 91
Query: 231 ATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
+I L V PH P G+ S +
Sbjct: 92 GSINHTYHLDVVERSPHRPILQAGLPANASTVV 124
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 24/152 (15%)
Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIKPEAMYQRKVG 167
Q+ SL+ V + +G YTC N +G+ + ++V+ R P P A VG
Sbjct: 65 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVG 124
Query: 168 ESVDMHCEAQEAEGTQKPTITWQRR----------DGVALPKNRVKIVGGNIT---IEGL 214
V+ C+ +P I W + DG+ K +K G N T IE L
Sbjct: 125 GDVEFVCKVYS---DAQPHIQWIKHVEKNGSKYGPDGLPYLK-VLKAAGVNTTDKEIEVL 180
Query: 215 --RRVDF---GYYECVVSNEVATIVQAAQLVV 241
R V F G Y C+ N + +A L V
Sbjct: 181 YIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 212
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGG--------NITIEGLRRVDFGYYECVVSNEV 230
A G PT+ W + ++R+ GG ++ +E + D G Y CVV NE
Sbjct: 34 AGGNPMPTMRWLKNGKEFKQEHRI---GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEY 90
Query: 231 ATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
+I L V PH P G+ S +
Sbjct: 91 GSINHTYHLDVVERSPHRPILQAGLPANASTVV 123
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 14/136 (10%)
Query: 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNGSLL 115
K+ P + FR C NPT ++W K+ R + + Q SL+
Sbjct: 23 KLLAVPAANTVRFR------CPAAGNPT-PSISWLKNGREFRGEHRIGGIKLRHQQWSLV 75
Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIKPEAMYQRKVGESVDMH 173
V + +G YTC N G+ + ++VL R P P A +G V+ H
Sbjct: 76 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 135
Query: 174 CEAQEAEGTQKPTITW 189
C+ +P I W
Sbjct: 136 CKVY---SDAQPHIQW 148
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 154 FTIKPEAMYQRKVG----ESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG-- 207
+ +PE M ++ + +V C A G P+I+W + ++R+ GG
Sbjct: 13 YWTRPERMDKKLLAVPAANTVRFRCPAA---GNPTPSISWLKNGREFRGEHRI---GGIK 66
Query: 208 ------NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSV 261
++ +E + D G Y CVV N+ +I Q L V PH P G+ +
Sbjct: 67 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 126
Query: 262 TLEWLPGYSGGPDLKQNYVIWYREQGNKDWL 292
L G D++ + ++ Q + WL
Sbjct: 127 VL--------GSDVEFHCKVYSDAQPHIQWL 149
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 244 TQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGS 301
+ P AP T A+E SV + W+P +GG ++ V + + + DW L PP
Sbjct: 16 SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 75
Query: 302 TQITINRLTPATTYEFQVVGKNELGD 327
+ I L +Y+F+V N LG+
Sbjct: 76 LSVEITGLEKGISYKFRVRALNMLGE 101
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
GS R+ + DGTL V D+G Y C V+N G A+ A LNV
Sbjct: 356 GSYRVRISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTAS-ATLNV 402
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 106 IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
I V+ +G+L FT V G+YTC N+ G +S + V
Sbjct: 362 ISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 239 LVVEGTQPHAP-YNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297
+V + +P P + I + +V L W P G L NY I RE W P +
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS 62
Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELG 326
T TI L YEF+++ +N+ G
Sbjct: 63 --RYTYTTIEGLRAGKQYEFRIIAENKHG 89
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTCTPYNAHGTQ 138
VTW KD R L+ Q+ + NG+ L RV + +G YT N++GT+
Sbjct: 514 VTWHKDDRELK--QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTK 564
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIKPEAMYQR 164
V Q+ SL+ V + +G YTC N +G+ + ++V+ R P P A
Sbjct: 70 VRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAST 129
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRR----------DGVALPK--NRVKIVGGNITIE 212
VG V+ C+ +P I W + DG+ K I N +
Sbjct: 130 VVGGDVEFVCKVY---SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 186
Query: 213 GLRRV---DFGYYECVVSNEVATIVQAAQLVV 241
L V D G Y C VSN + Q+A L V
Sbjct: 187 ALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGG--------NITIEGLRRVDFGYYECVVSNEV 230
A G PT W + ++R+ GG ++ E + D G Y CVV NE
Sbjct: 42 AGGNPXPTXRWLKNGKEFKQEHRI---GGYKVRNQHWSLIXESVVPSDKGNYTCVVENEY 98
Query: 231 ATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
+I L V PH P G+ S +
Sbjct: 99 GSINHTYHLDVVERSPHRPILQAGLPANASTVV 131
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 24/152 (15%)
Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP--PAFTIKPEAMYQRKVG 167
Q+ SL+ V + +G YTC N +G+ + ++V+ R P P A VG
Sbjct: 66 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVG 125
Query: 168 ESVDMHCEAQEAEGTQKPTITWQRR----------DGVALPKNRVKIVGGNIT---IEGL 214
V+ C+ +P I W + DG+ K +K G N T IE L
Sbjct: 126 GDVEFVCKVYS---DAQPHIQWIKHVEKNGSKYGPDGLPYLK-VLKAAGVNTTDKEIEVL 181
Query: 215 --RRVDF---GYYECVVSNEVATIVQAAQLVV 241
R V F G Y C+ N + +A L V
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGG--------NITIEGLRRVDFGYYECVVSNEV 230
A G PT+ W + ++R+ GG ++ +E + D G Y CVV NE
Sbjct: 35 AGGNPMPTMRWLKNGKEFKQEHRI---GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEY 91
Query: 231 ATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
+I L V PH P G+ S +
Sbjct: 92 GSINHTYHLDVVERWPHRPILQAGLPANASTVV 124
>pdb|2R6P|E Chain E, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
Resolution Cryoem Map Of Fab Complexed With Dengue 2
Virus.
pdb|2R6P|G Chain G, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
Resolution Cryoem Map Of Fab Complexed With Dengue 2
Virus
Length = 206
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 10/123 (8%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF------PAKVTFTPTVQYL 68
+ D TL INPV +DD Y C+ +N +P A +E P F P+ + L
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQTN--VDPWAFGGGTKLEIKRADAAPTVSIFPPSSEQL 129
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKR--LLEPYQTKDIVVMQNGSLLFTRVNQNHQGR 126
VV P V W D++ +L + +D + +L T+
Sbjct: 130 TSGGASVVCFLNNFYPKDINVKWKIDRQNGVLNSWTDQDSTYSMSSTLTLTKDEYERHNS 189
Query: 127 YTC 129
YTC
Sbjct: 190 YTC 192
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 38/146 (26%)
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA--MYQRKVGE 168
+GSLL V + +G YTC + + ++++KP + PE + +VG+
Sbjct: 83 DGSLLLQDVQKADEGIYTCEIRLKNES--------MVMKKPVELWVLPEEPRDLRVRVGD 134
Query: 169 SVDMHCEAQEAEGTQKPTITWQRRDG----------------------VALPKNRVKIVG 206
+ M C Q E + + W G + +NRV + G
Sbjct: 135 TTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTG 194
Query: 207 ------GNITIEGLRRVDFGYYECVV 226
G+I ++ ++ D G Y C +
Sbjct: 195 DISRNDGSIKLQTVKESDQGIYTCSI 220
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human
Leucine- Rich Repeat-Containing Protein 4
Length = 103
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
S R+ + DGTL + V D+G+Y C V+N G A+ AYLNV
Sbjct: 50 ASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNAS-AYLNV 96
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
V C + ++P V+W + ++ N +L +N++ +G Y C
Sbjct: 22 VVCRVSSSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----E 75
Query: 136 GTQGSSGQME-----VLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTIT 188
G + G+++ V+V PPA ++ P+ + GE + C A G+ +P I+
Sbjct: 76 GRVEARGEIDFRDIIVIVNVPPAISM-PQKSFNATAERGEEMTFSCRAS---GSPEPAIS 131
Query: 189 WQRRDGVALPKNRVKIVGGN---ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
W R+G + +N I+ G+ +T+ + D G Y C +N+ + A L V
Sbjct: 132 W-FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXR-NVSVTEVN 355
T P Q+ L P T Y+F+V G N G G S I + +++
Sbjct: 41 TVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSP 100
Query: 356 NGFVISWQPP-LERASLIQY 374
+G ++W+PP + +I+Y
Sbjct: 101 DGAHLTWEPPSVTSGKIIEY 120
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
T P Q+ L P T Y+F+V G N G G S I KT
Sbjct: 41 TVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKT 82
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQA 49
K G L+ +PV + DSG Y C+ NG G ++A
Sbjct: 167 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEA 200
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 23/158 (14%)
Query: 94 DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153
+ ++ PY D V + + F+ V + G YTC G + + V PP+
Sbjct: 49 NSQITAPY--ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPS 106
Query: 154 FTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV------ 205
KP V G + C E +G+ +W +DG+++ K
Sbjct: 107 ---KPTISVPSSVTIGNRAVLTC--SEHDGSPPSEYSW-FKDGISMLTADAKKTRAFMNS 160
Query: 206 -------GGNITIEGLRRVDFGYYECVVSNEVATIVQA 236
G++ + + D G Y C N T +++
Sbjct: 161 SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 198
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 13/134 (9%)
Query: 105 DIVVMQNGSLLFTRVNQNHQGRYTC-TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQ 163
D++V N SL RV +G YTC + S Q+ K P+ T++P
Sbjct: 65 DLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSK-PSMTLEPNK--D 121
Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN----RVKIVGGNITIEGLRRVDF 219
+ G V + C + +G + + W+ GV L N ++ G + + RV
Sbjct: 122 LRPGNMVTITCSSY--QGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVL 179
Query: 220 GY---YECVVSNEV 230
G Y C+V N V
Sbjct: 180 GANGTYSCLVRNPV 193
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG----NITIEGLRRVDFG 220
K+GE+ + C+ G P I W R + + K+ +T+ + D G
Sbjct: 20 KLGEAAQLSCQIV---GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEG 76
Query: 221 YYECVVSNEVATIVQAAQLVVEGT-QPHAPY 250
Y C+ +NEV + +++L+++ T Q H Y
Sbjct: 77 VYTCIATNEVGEVETSSKLLLQATPQFHPGY 107
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 1 MNTKVGSLETRVVIKKDGTLV-INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAK 58
N++ L R+ + ++ +++ I+P+ +D+G Y CE+SN + ++ L++ F P++
Sbjct: 145 FNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPSR 204
Query: 59 V 59
+
Sbjct: 205 L 205
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 107 VVMQNGSLLFTRVNQNHQGRYTC--TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR 164
++ NGSLLF + G YT T N TQ + + V +P
Sbjct: 66 IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQAT---VRFHVHQPVTQPFLQVTNTTV 122
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYY 222
K +SV + C + + I W R+ + N + I+ ++R D G Y
Sbjct: 123 KELDSVTLTCLSNDIGAN----IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEY 178
Query: 223 ECVVSNEVA 231
+C +SN V+
Sbjct: 179 QCEISNPVS 187
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 1 MNTKVGSLETRVVIKKDGTLV-INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF 55
N++ L R+ + ++ +++ I+P+ +D+G Y CE+SN + ++ L++ F
Sbjct: 145 FNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 107 VVMQNGSLLFTRVNQNHQGRYTC--TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR 164
++ NGSLLF + G YT T N TQ + + V +P
Sbjct: 66 IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQAT---VRFHVHQPVTQPFLQVTNTTV 122
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYY 222
K +SV + C + + I W R+ + N + I+ ++R D G Y
Sbjct: 123 KELDSVTLTCLSNDIGAN----IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEY 178
Query: 223 ECVVSNEVA 231
+C +SN V+
Sbjct: 179 QCEISNPVS 187
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 74/225 (32%), Gaps = 38/225 (16%)
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVI----WYREQGNKDWLPIPV---TP 298
P AP+ +T V V L W P G Y + + E G V P
Sbjct: 331 PSAPHYLTAVGXGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEP 390
Query: 299 PGS---TQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSVT-EV 354
P T +T++ L P Y F V +N + + S V +
Sbjct: 391 PHGLTRTSVTVSDLEPHXNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRS 450
Query: 355 NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414
+SW P + S + Y + YR G + N +R R +G
Sbjct: 451 TTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYN---VR----------RTEG------ 491
Query: 415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+T++ L P TTY QV + G G S + +T
Sbjct: 492 --------FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 528
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL--VRKPPAFTIKPEAMYQRKVG 167
Q+ SL+ V + +G YTC N +G+ + ++V+ R P A VG
Sbjct: 66 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVG 125
Query: 168 ESVDMHCEAQEAEGTQKPTITWQRR----------DGVALPKNRVKIVGGNIT---IEGL 214
V+ C+ +P I W + DG+ K +K G N T IE L
Sbjct: 126 GDVEFVCKVYS---DAQPHIQWIKHVEKNGSKYGPDGLPYLK-VLKAAGVNTTDKEIEVL 181
Query: 215 --RRVDF---GYYECVVSNEVATIVQAAQLVV 241
R V F G Y C+ N + +A L V
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 20/149 (13%)
Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL--VRKPPAFTIKPEAMYQRKVG 167
Q+ SL+ V + +G YTC N +G+ + ++V+ R P A VG
Sbjct: 74 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVG 133
Query: 168 ESVDMHCEAQEAEGTQKPTITWQRR----------DGVALPK--NRVKIVGGNITIEGLR 215
V+ C+ +P I W + DG+ K I N + L
Sbjct: 134 GDVEFVCKVY---SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 216 RV---DFGYYECVVSNEVATIVQAAQLVV 241
V D G Y C VSN + Q+A L V
Sbjct: 191 NVTEADAGEYICKVSNYIGQANQSAWLTV 219
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 74/225 (32%), Gaps = 38/225 (16%)
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVI----WYREQGNKDWLPIPV---TP 298
P AP+ +T V V L W P G Y + + E G V P
Sbjct: 331 PSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEP 390
Query: 299 PGS---TQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSVT-EV 354
P T +T++ L P Y F V +N + + S V +
Sbjct: 391 PHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRS 450
Query: 355 NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414
+SW P + S + Y + YR G + NSY R +G
Sbjct: 451 TTSLSVSWSIPPPQQSRVWKYEVTYRKKG------------DSNSY-NVRRTEG------ 491
Query: 415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+T++ L P TTY QV + G G S + +T
Sbjct: 492 --------FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 528
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 32.3 bits (72), Expect = 0.59, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
G+ GSSG +EV +F + P G+ + + C ++ +I W R DGV
Sbjct: 1 GSSGSSG-VEV-----ESFLVHP--------GDLLQLRCRLRD----DVQSINWLR-DGV 41
Query: 196 ALPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
L + NR +I G + ++ D G Y CV S+ + + V P P
Sbjct: 42 QLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGP 96
>pdb|3VCY|A Chain A, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin.
pdb|3VCY|B Chain B, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin.
pdb|3VCY|C Chain C, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin.
pdb|3VCY|D Chain D, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin
Length = 430
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 161 MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN--------ITIE 212
M + VG ++ + C A AEGT R + N + +G ITIE
Sbjct: 159 MDKVSVGATITVMCAATLAEGTTVLE-NAAREPEIVDTANFLNAIGAKVSGMGTDTITIE 217
Query: 213 GLRRVDFGYYECVVSN------EVATIVQAAQLVVEGTQPH 247
G+ R+ GY+E V VA V ++V + T+ H
Sbjct: 218 GVERLGGGYHEVVADRIETGTFLVAAAVSGGKIVCKNTKAH 258
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 74/225 (32%), Gaps = 38/225 (16%)
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVI----WYREQGNKDWLPIPV---TP 298
P AP+ +T V V L W P G Y + + E G V P
Sbjct: 334 PSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEP 393
Query: 299 PGS---TQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSVT-EV 354
P T +T++ L P Y F V +N + + S V +
Sbjct: 394 PHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRS 453
Query: 355 NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414
+SW P + S + Y + YR G + N +R R +G
Sbjct: 454 TTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYN---VR----------RTEG------ 494
Query: 415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+T++ L P TTY QV + G G S + +T
Sbjct: 495 --------FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 531
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL--VRKPPAFTIKPEAMYQRKVG 167
Q+ SL+ V + +G YTC N +G+ + ++V+ R P A VG
Sbjct: 64 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVG 123
Query: 168 ESVDMHCEAQEAEGTQKPTITWQRR----------DGVALPKNRVKIVGGNIT---IEGL 214
V+ C+ +P I W + DG+ K +K G N T IE L
Sbjct: 124 GDVEFVCKVYS---DAQPHIQWIKHVEKNGSKYGPDGLPYLK-VLKAAGVNTTDKEIEVL 179
Query: 215 --RRVDF---GYYECVVSNEVATIVQAAQLVV 241
R V F G Y C+ N + +A L V
Sbjct: 180 YIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 211
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 241 VEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQ----NYVIWYREQGNKDWLPIPV 296
++ +P+ P+N++ + +E ++ L P +K Y I YR + W IP
Sbjct: 1 MDKVKPNPPHNLSVINSEELSSI--LKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPP 58
Query: 297 TPPGSTQ--ITINRLTPATTYEFQVVGKNELGDGMLSN 332
ST+ T+ L P T Y F++ E G G S+
Sbjct: 59 EDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 96
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 104/287 (36%), Gaps = 59/287 (20%)
Query: 187 ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ-----LVV 241
I W + + +PK + I+ N T + D ++ + T Q Q ++
Sbjct: 43 IVW-KTNHFTIPKEQYTII--NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITII 99
Query: 242 EGTQPHAPYNITGVATE-FSVTLEWLPGYSGGPD--LKQNYVI---W----YREQGNKDW 291
G P P N++ + E + EW GG + L+ N+ + W + + K
Sbjct: 100 SGLPPEKPKNLSCIVNEGKKMRCEW----DGGRETHLETNFTLKSEWATHKFADCKAKRD 155
Query: 292 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSV 351
P T ST +N E V +N LG +I N+SV
Sbjct: 156 TPTSCTVDYSTVYFVN-------IEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSV 208
Query: 352 T---EVNNGFVISWQPPLERASLIQYYLIKYRTD--GSWKTLNKGQIRPEENSYLGEYRE 406
E+++ ++W P ++ +I Y I+YRT +W QI PE+
Sbjct: 209 INSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTW-----SQIPPED--------- 254
Query: 407 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
T + T+ L P T Y F++ E G G S+
Sbjct: 255 -----------TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 290
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 11 RVVIKKDGT---LVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
RVV++K+G L I +D+G+Y C+ ++ G+ Q A L +
Sbjct: 46 RVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 104/287 (36%), Gaps = 59/287 (20%)
Query: 187 ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ-----LVV 241
I W + + +PK + I+ N T + D ++ + T Q Q ++
Sbjct: 43 IVW-KTNHFTIPKEQYTII--NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITII 99
Query: 242 EGTQPHAPYNITGVATE-FSVTLEWLPGYSGGPD--LKQNYVI---W----YREQGNKDW 291
G P P N++ + E + EW GG + L+ N+ + W + + K
Sbjct: 100 SGLPPEKPKNLSCIVNEGKKMRCEW----DGGRETHLETNFTLKSEWATHKFADCKAKRD 155
Query: 292 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSV 351
P T ST +N E V +N LG +I N+SV
Sbjct: 156 TPTSCTVDYSTVYFVN-------IEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSV 208
Query: 352 T---EVNNGFVISWQPPLERASLIQYYLIKYRTD--GSWKTLNKGQIRPEENSYLGEYRE 406
E+++ ++W P ++ +I Y I+YRT +W QI PE+
Sbjct: 209 INSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTW-----SQIPPED--------- 254
Query: 407 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
T + T+ L P T Y F++ E G G S+
Sbjct: 255 -----------TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 290
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 104/287 (36%), Gaps = 59/287 (20%)
Query: 187 ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ-----LVV 241
I W + + +PK + I+ N T + D ++ + T Q Q ++
Sbjct: 42 IVW-KTNHFTIPKEQYTII--NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITII 98
Query: 242 EGTQPHAPYNITGVATE-FSVTLEWLPGYSGGPD--LKQNYVI---W----YREQGNKDW 291
G P P N++ + E + EW GG + L+ N+ + W + + K
Sbjct: 99 SGLPPEKPKNLSCIVNEGKKMRCEW----DGGRETHLETNFTLKSEWATHKFADCKAKRD 154
Query: 292 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSV 351
P T ST +N E V +N LG +I N+SV
Sbjct: 155 TPTSCTVDYSTVYFVN-------IEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSV 207
Query: 352 T---EVNNGFVISWQPPLERASLIQYYLIKYRTD--GSWKTLNKGQIRPEENSYLGEYRE 406
E+++ ++W P ++ +I Y I+YRT +W QI PE+
Sbjct: 208 INSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTW-----SQIPPED--------- 253
Query: 407 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
T + T+ L P T Y F++ E G G S+
Sbjct: 254 -----------TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 289
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 23/102 (22%)
Query: 358 FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417
+++WQPP E I Y+I Y TD + + DW+ PV
Sbjct: 37 IIVNWQPPSEANGKITGYIIYYSTDVNAEI----------------------HDWVIEPV 74
Query: 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
T I LT T Y F++ +N G G +S V +T
Sbjct: 75 VGNRLTH-QIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 115
>pdb|1EJO|L Chain L, Fab Fragment Of Neutralising Monoclonal Antibody 4c4
Complexed With G-H Loop From Fmdv
Length = 216
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ D TL INPV +DD Y C+ SN +P A +E + PTV P
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQSN--EDPLTFGAGTKLEL-KRADAAPTVSIFP 123
>pdb|3UYP|A Chain A, Crystal Structure Of The Dengue Virus Serotype 4 Envelope
Protein Domain Iii In Complex With The Variable Domains
Of Mab 4e11
pdb|3UZE|A Chain A, Crystal Structure Of The Dengue Virus Serotype 3 Envelope
Protein Domain Iii In Complex With The Variable Domains
Of Mab 4e11
pdb|3UZE|B Chain B, Crystal Structure Of The Dengue Virus Serotype 3 Envelope
Protein Domain Iii In Complex With The Variable Domains
Of Mab 4e11
pdb|3UZQ|A Chain A, Crystal Structure Of The Dengue Virus Serotype 1 Envelope
Protein Domain Iii In Complex With The Variable Domains
Of Mab 4e11
pdb|3UZV|B Chain B, Crystal Structure Of The Dengue Virus Serotype 2 Envelope
Protein Domain Iii In Complex With The Variable Domains
Of Mab 4e11
Length = 253
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGI 41
+ D TL INPV +DD Y C+ SN +
Sbjct: 204 RTDFTLTINPVEADDVATYFCQRSNEV 230
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQ----NYVIWYREQGNKDWLPIPVTPPG 300
+P+ P+N++ + +E ++ L P +K Y I YR + W IP
Sbjct: 99 KPNPPHNLSVINSEELSSI--LKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA 156
Query: 301 STQ--ITINRLTPATTYEFQVVGKNELGDGMLSN 332
ST+ T+ L P T Y F++ E G G S+
Sbjct: 157 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 190
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 30/143 (20%)
Query: 316 EFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSVT---EVNNGFVISWQPPLERASLI 372
E V +N LG +I N+SV E+++ ++W P ++ +I
Sbjct: 73 EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVII 132
Query: 373 QYYLIKYRTD--GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRL 430
Y I+YRT +W QI PE+ T + T+ L
Sbjct: 133 LKYNIQYRTKDASTW-----SQIPPED--------------------TASTRSSFTVQDL 167
Query: 431 TPATTYEFQVVGKNELGDGMLSN 453
P T Y F++ E G G S+
Sbjct: 168 KPFTEYVFRIRCMKEDGKGYWSD 190
>pdb|3S35|L Chain L, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 217
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ D TL INPV +DD Y C+ SN +P A +E + PTV P
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQSN--EDPLTFGAGTKLEL-KRADAAPTVSIFP 123
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 28/87 (32%)
Query: 356 NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
N ++SWQPP R I Y+IKY GS P E +
Sbjct: 216 NSLLVSWQPPRAR---ITGYIIKYEKPGS---------PPREV----------------V 247
Query: 416 PVTPPGSTQITINRLTPATTYEFQVVG 442
P PG T+ TI L P T Y V+
Sbjct: 248 PRPRPGVTEATITGLEPGTEYTIYVIA 274
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 210 TIEGLRR-VDFGYYECVVSNEVATIVQAAQLVVEG-TQPHAPYNITGVATE-FSVTLEWL 266
TI GL+ D+ Y +++ +++ +V++ T AP N+ +AT S+ + W
Sbjct: 168 TITGLQPGTDYKIYLYTLNDNA----RSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQ 223
Query: 267 PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 321
P + Y+I Y + G+ +P PG T+ TI L P T Y V+
Sbjct: 224 PPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIA 274
>pdb|1QGC|4 Chain 4, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 438
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ D TL I+PV +DD Y C+ SN + A L+++ + PTV P
Sbjct: 72 RTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLK---RADAAPTVSIFP 123
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 23/102 (22%)
Query: 358 FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417
+++WQPP E I Y+I Y TD + +I DW+ PV
Sbjct: 124 IIVNWQPPSEANGKITGYIIYYSTDVN------AEIH----------------DWVIEPV 161
Query: 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
T I LT T Y F++ +N G G +S V +T
Sbjct: 162 VGNRLTH-QIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 202
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 28/87 (32%)
Query: 356 NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
N ++SWQPP R I Y+IKY GS P E +
Sbjct: 197 NSLLVSWQPPRAR---ITGYIIKYEKPGS---------PPREV----------------V 228
Query: 416 PVTPPGSTQITINRLTPATTYEFQVVG 442
P PG T+ TI L P T Y V+
Sbjct: 229 PRPRPGVTEATITGLEPGTEYTIYVIA 255
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 210 TIEGLRR-VDFGYYECVVSNEVATIVQAAQLVVEG-TQPHAPYNITGVATE-FSVTLEWL 266
TI GL+ D+ Y +++ +++ +V++ T AP N+ +AT S+ + W
Sbjct: 149 TITGLQPGTDYKIYLYTLNDNA----RSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQ 204
Query: 267 PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 321
P + Y+I Y + G+ +P PG T+ TI L P T Y V+
Sbjct: 205 PPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIA 255
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 111 NGSLLFTRVNQNHQGRYTC--TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGE 168
+GS+L Q +G Y C + + A Q ++ + V PP ++ P + G
Sbjct: 78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQA---RLRLRVLVPPLPSLNPGPALEEGQGL 134
Query: 169 SVDMHCEAQEAEGTQKPTITW 189
++ C A EG+ P++TW
Sbjct: 135 TLAASCTA---EGSPAPSVTW 152
>pdb|1GGI|L Chain L, Crystal Structure Of An Hiv-1 Neutralizing Antibody 50.1
In Complex With Its V3 Loop Peptide Antigen
pdb|1GGI|M Chain M, Crystal Structure Of An Hiv-1 Neutralizing Antibody 50.1
In Complex With Its V3 Loop Peptide Antigen
Length = 218
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ D TL INPV +DD Y C+ SN +P A +E + PTV P
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQSN--EDPLTFGAGTKLEI-KRADAAPTVSIFP 123
>pdb|1GGB|L Chain L, Major Antigen-Induced Domain Rearrangements In An Antibody
pdb|1GGC|L Chain L, Major Antigen-Induced Domain Rearrangements In An Antibody
Length = 215
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ D TL INPV +DD Y C+ SN +P A +E + PTV P
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQSN--EDPLTFGAGTKLEI-KRADAAPTVSIFP 123
>pdb|1LK3|L Chain L, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
pdb|1LK3|M Chain M, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
Length = 210
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 18/128 (14%)
Query: 17 DGTLVINPVGSDDSGLYMCEVS-NGIGEPQAAQAYLNVEF------PAKVTFTPTVQYLP 69
D TL I+PV +DD+ +Y C+ S NG P A +E P F P+ + L
Sbjct: 69 DFTLTIDPVEADDTAIYFCQQSWNG---PLTFGAGTKLELKRADAAPTVSIFPPSTEQLA 125
Query: 70 FRLQGVVQCHIKANPTFQYVTWTKD---KR-----LLEPYQTKDIVVMQNGSLLFTRVNQ 121
VV P V W D +R + +KD + +L T+ +
Sbjct: 126 TGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADY 185
Query: 122 NHQGRYTC 129
YTC
Sbjct: 186 ESHNLYTC 193
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQ----NYVIWYREQGNKDWLPIPVTPPG 300
+P+ P+N++ + +E ++ L P +K Y I YR + W IP
Sbjct: 103 KPNPPHNLSVINSEELSSI--LKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA 160
Query: 301 STQ--ITINRLTPATTYEFQVVGKNELGDGMLSN 332
ST+ T+ L P T Y F++ E G G S+
Sbjct: 161 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 194
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 30/143 (20%)
Query: 316 EFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSVT---EVNNGFVISWQPPLERASLI 372
E V +N LG +I N+SV E+++ ++W P ++ +I
Sbjct: 77 EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVII 136
Query: 373 QYYLIKYRTD--GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRL 430
Y I+YRT +W QI PE+ T + T+ L
Sbjct: 137 LKYNIQYRTKDASTW-----SQIPPED--------------------TASTRSSFTVQDL 171
Query: 431 TPATTYEFQVVGKNELGDGMLSN 453
P T Y F++ E G G S+
Sbjct: 172 KPFTEYVFRIRCMKEDGKGYWSD 194
>pdb|4G6A|D Chain D, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
pdb|4G6A|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
Length = 218
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN----GIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
+ D TL I+PV +DD+ Y C+ +N G + V P+ F P+ + L
Sbjct: 72 RTDFTLTIDPVEADDAATYYCQQNNVDPWTFGGGTKLEIKRAVAAPSVFIFPPSDEQLKS 131
Query: 71 RLQGVVQCHIKANPTFQYVTWTKDKRL--------LEPYQTKDIVVMQNGSLLFTRVNQN 122
VV P V W D L + +KD + +L ++ +
Sbjct: 132 GTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYE 191
Query: 123 HQGRYTC 129
Y C
Sbjct: 192 KHKVYAC 198
>pdb|3N1G|C Chain C, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|D Chain D, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1M|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1P|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 111
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 15/70 (21%)
Query: 394 RPEENSYLGEYRE---QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM 450
RP ++ +Y++ +G+K W +I+ L P T+Y+ ++ NE G+
Sbjct: 47 RPTDSDNDSDYKKDMVEGDKYWH------------SISHLQPETSYDIKMQCFNEGGESE 94
Query: 451 LSNIVVVKTK 460
SN+++ +TK
Sbjct: 95 FSNVMICETK 104
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 15/176 (8%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDI-VVMQNGSLLFT--RVNQNHQGRYTCTPYN 133
+ HI P + V+W +D +++ + + +G T V + + GRY+ N
Sbjct: 26 EAHISGFPVPE-VSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84
Query: 134 AHGTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
G S+ ++ V PP F + ++M R+ G V + G P + + R
Sbjct: 85 GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQ-GSQVRLQVRV---TGIPTPVVKF-YR 139
Query: 193 DGVALPKN---RVKIVGG--NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
DG + + ++ G ++ I D G Y +N V A+L+V+G
Sbjct: 140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQG 195
>pdb|3TT3|L Chain L, Crystal Structure Of Leut In The Inward-Open
Conformation In Complex With Fab
Length = 218
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
+ D TL INPV +DD Y C+ SN
Sbjct: 72 RTDFTLTINPVETDDVATYYCQQSN 96
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
V+W + R ++ ++V + G SL+F V + G Y C N G + Q++V
Sbjct: 37 VSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Query: 147 LVRK 150
L ++
Sbjct: 97 LAKE 100
>pdb|3BSZ|L Chain L, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|M Chain M, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
Length = 215
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
+ D TL INPV +DD Y C+ SN
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQSN 96
>pdb|2VL5|B Chain B, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2VL5|D Chain D, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2Y5T|B Chain B, Crystal Structure Of The Pathogenic Autoantibody Ciic1
In Complex With The Triple-Helical C1 Peptide
Length = 218
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
+ D TL INPV +DD Y C+ SN
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQSN 96
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 28/154 (18%)
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVS--VTEVNNGFVIS 361
+TI L P TTY ++ N G G +S + + E N ++
Sbjct: 70 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVN 129
Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
+ S I++YL++YR S +W P P G
Sbjct: 130 LIKQDDGGSPIRHYLVRYRALSS--------------------------EWKPEIRLPSG 163
Query: 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455
S + + L YE VV +N+ G ++ V
Sbjct: 164 SDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFV 197
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 53/157 (33%), Gaps = 33/157 (21%)
Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSV-TEVNN 356
PP IT+ L P T Y ++ N G + R++ V
Sbjct: 51 PPSRNSITLTNLNPGTEYVVSIIAVN----GREESPPLIGQQATVSDIPRDLEVIASTPT 106
Query: 357 GFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
+ISW+PP A ++YY I Y G NS + E+ G+K
Sbjct: 107 SLLISWEPP---AVSVRYYRITYGETGG-------------NSPVQEFTVPGSK------ 144
Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
+ TIN + P Y + GD S+
Sbjct: 145 ------STATINNIKPGADYTITLYAVTGRGDSPASS 175
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
T + +N L P TTYE +V N G G S I + +T
Sbjct: 74 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 110
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNI 333
T + +N L P TTYE +V N G G S I
Sbjct: 74 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKI 105
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 11 RVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGE 43
+++++++G +L+I PV S D+G+Y C +N G+
Sbjct: 57 KMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQ 91
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
G+ GSSG ++ P T++ G+ M C+ G P ++WQ
Sbjct: 1 GSSGSSGFRPHFLQAPGDLTVQE--------GKLCRMDCKVS---GLPTPDLSWQLDGKP 49
Query: 196 ALPKNRVKIVG-----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
P + K++ ++ IE + D G Y C+ +N + +LVV +
Sbjct: 50 VRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 144 MEVLVRKPPAFTIKPEAM-YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----- 197
++V+V PP+ + M + +SV + C+A +G +PT+TW +DG +
Sbjct: 4 IQVIVNVPPSVRARQSTMNATANLSQSVTLACDA---DGFPEPTMTWT-KDGEPIEQEDN 59
Query: 198 -PKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
K G + I+ + + D Y C+ N+
Sbjct: 60 EEKYSFNYDGSELIIKKVDKSDEAEYICIAENK 92
>pdb|3D1M|C Chain C, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|D Chain D, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3N1F|C Chain C, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|D Chain D, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1Q|C Chain C, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|D Chain D, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|F Chain F, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 102
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 394 RPEENSYLGEYRE---QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM 450
RP ++ +Y+ +G+K W I L P T+Y+ ++ NE G+
Sbjct: 45 RPTDSDNDSDYKRDVVEGSKQWH------------MIGHLQPETSYDIKMQCFNEGGESE 92
Query: 451 LSNIVVVKTK 460
SN+++ +TK
Sbjct: 93 FSNVMICETK 102
>pdb|2R29|L Chain L, Neutralization Of Dengue Virus By A Serotype
Cross-Reactive Antibody Elucidated By Cryoelectron
Microscopy And X-Ray Crystallography
Length = 217
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ D TL INPV +DD Y C+ +N +P A +E + PTV P
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQTN--VDPWAFGGGTKLEI-KRADAAPTVSIFP 123
>pdb|2R69|L Chain L, Crystal Structure Of Fab 1a1d-2 Complexed With E-Diii Of
Dengue Virus At 3.8 Angstrom Resolution
Length = 212
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ D TL INPV +DD Y C+ +N +P A +E + PTV P
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQTN--VDPWAFGGGTKLEI-KRADAAPTVSIFP 123
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNI 209
KP T++ + + G V C A+ T+ W R LP +R G +
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAY--TLVWTRLHNGKLP-SRAMDFNGIL 64
Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
TI ++ D G Y C SN A A L V+
Sbjct: 65 TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVI-WYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 315
T+ S+TL+W G + QN+V+ W +GN ++ + Q I +L+PA
Sbjct: 30 TKNSLTLQWKAPSDNGSKI-QNFVLEWDEGKGNGEFCQCYMG--SQKQFKITKLSPAMGC 86
Query: 316 EFQVVGKNELGDGMLS 331
+F++ +N+ G S
Sbjct: 87 KFRLSARNDYGTSGFS 102
>pdb|1ACY|L Chain L, Crystal Structure Of The Principal Neutralizing Site Of
Hiv- 1
pdb|1AI1|L Chain L, Hiv-1 V3 Loop Mimic
Length = 215
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ D TL I+PV +DD+ Y C+ +N +P A +E + PTV P
Sbjct: 72 RTDFTLTIDPVEADDAATYYCQQNN--EDPPTFGAGTKLEM-RRADAAPTVSIFP 123
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTCTPYNAHGTQ 138
VTW KD R L+ Q+ + NG+ L RV + +G YT N++GT+
Sbjct: 408 VTWHKDDRELK--QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTK 458
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 45 QAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP---- 100
+ L V P ++ T T Q+ +G ++C I++ P + W+ + +LE
Sbjct: 3 SGSSGTLTVNGPPIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG 61
Query: 101 YQTKDIVVMQNGSL----LFTRVNQNHQGRYTCTPYNAHGT 137
T + + + G + + V + Q Y CT +N+ G+
Sbjct: 62 RYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS 102
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+T+ T++ L P T Y FQV + G G S + V+T
Sbjct: 65 TTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET 102
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 28/154 (18%)
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVS--VTEVNNGFVIS 361
+TI L P TTY ++ N G G +S + E N ++
Sbjct: 70 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQRGEDGNSIKVN 129
Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
+ S I++YL++YR S +W P P G
Sbjct: 130 LIKQDDGGSPIRHYLVRYRALSS--------------------------EWKPEIRLPSG 163
Query: 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455
S + + L YE VV +N+ G ++ V
Sbjct: 164 SDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFV 197
>pdb|1QFW|L Chain L, Ternary Complex Of Human Chorionic Gonadotropin With Fv
Anti Alpha Subunit And Fv Anti Beta Subunit
Length = 114
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
+ D TL INPV +DD Y C+ S+
Sbjct: 72 RTDFTLTINPVEADDVATYYCQQSD 96
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGNITIEGLRRVDFGYYECV 225
G+ + + C ++ +I W R DGV L NR +I G + + D G Y CV
Sbjct: 24 GDLLQLRCRLRD----DVQSINWLR-DGVQLVESNRTRITGEEVEVRDSIPADSGLYACV 78
Query: 226 VSN 228
S+
Sbjct: 79 TSS 81
>pdb|1MOE|A Chain A, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage.
pdb|1MOE|B Chain B, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage
Length = 240
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
+ D TL+I+PV +DD Y C+ +N
Sbjct: 72 RTDFTLIIDPVEADDVATYYCQQTN 96
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
KK L +N V D+G+Y C SN +G A + VE
Sbjct: 242 KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
KK L +N V D+G+Y C SN +G A + VE
Sbjct: 242 KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
D TL IN V ++D G+Y C+ SN L ++ + PTV P
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSNSWPRTFGGGTKLEIK---RADAAPTVSIFP 119
>pdb|1XT5|A Chain A, Crystal Structure Of Vcbp3, Domain 1, From Branchiostoma
Floridae
Length = 135
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEG 213
G +V++ C Q A TQ P I+W + A P K+ GN +G
Sbjct: 18 AGGTVELPCSYQLANDTQPPVISWLKG---ASPDRSTKVFKGNYNWQG 62
>pdb|2FBO|J Chain J, Crystal Structure Of The Two Tandem V-Type Regions Of
Vcbp3 (V-Region-Containing Chitin Binding Protein) To
1.85 A
Length = 250
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEG 213
G +V++ C Q A TQ P I+W + A P K+ GN +G
Sbjct: 16 AGGTVELPCSYQLANDTQPPVISWLKG---ASPDRSTKVFKGNYNWQG 60
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 357 GFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
++SWQPPLE I Y++ Y D + DW+
Sbjct: 26 AVIVSWQPPLEANGKITAYILFYTLD----------------------KNIPIDDWIMET 63
Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
++ T I L T Y F++ +N G G LS+ ++ +T
Sbjct: 64 ISGDRLTH-QIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105
>pdb|1J05|L Chain L, The Crystal Structure Of Anti-carcinoembryonic Antigen
Monoclonal Antibody T84.66 Fv Fragment
pdb|1J05|A Chain A, The Crystal Structure Of Anti-carcinoembryonic Antigen
Monoclonal Antibody T84.66 Fv Fragment
Length = 111
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
+ D TL+I+PV +DD Y C+ +N
Sbjct: 72 RTDFTLIIDPVEADDVATYYCQQTN 96
>pdb|1EGJ|L Chain L, Domain 4 Of The Beta Common Chain In Complex With An
Antibody
Length = 215
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
+ D TL I+PV +DD+ Y C+ +N
Sbjct: 72 RTDFTLTIDPVETDDAATYYCQQNN 96
>pdb|4GAG|L Chain L, Structure Of The Broadly Neutralizing Antibody Ap33 In
Complex With Its Hcv Epitope (E2 Residues 412-423)
pdb|4GAJ|L Chain L, Structure Of The Broadly Neutralizing Antibody Ap33 In
Complex With Its Hcv Epitope (E2 Residues 411-424)
pdb|4GAY|L Chain L, Structure Of The Broadly Neutralizing Antibody Ap33
pdb|4GAY|B Chain B, Structure Of The Broadly Neutralizing Antibody Ap33
Length = 218
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
+ D TL I+PV +DD+ Y C+ +N
Sbjct: 72 RTDFTLTIDPVEADDAATYYCQQNN 96
>pdb|1XGP|A Chain A, Structure For Antibody Hyhel-63 Y33a Mutant Complexed
With Hen Egg Lysozyme
pdb|1XGQ|A Chain A, Structure For Antibody Hyhel-63 Y33v Mutant Complexed
With Hen Egg Lysozyme
pdb|1XGR|A Chain A, Structure For Antibody Hyhel-63 Y33i Mutant Complexed
With Hen Egg Lysozyme
pdb|1XGT|A Chain A, Structure For Antibody Hyhel-63 Y33l Mutant Complexed
With Hen Egg Lysozyme
Length = 215
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNG 40
D TL IN V ++D G+Y C+ SN
Sbjct: 71 DFTLSINSVETEDFGMYFCQQSNS 94
>pdb|3D9A|L Chain L, High Resolution Crystal Structure Structure Of Hyhel10
Fab Complexed To Hen Egg Lysozyme
Length = 213
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSN 39
D TL IN V ++D G+Y C+ SN
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSN 92
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316
T SVTL W SG + Y I YR G + V +T+ +I L+P + Y
Sbjct: 20 TATSVTLTWD---SGNSEPVTYYGIQYRAAGTEGPF-QEVDGVATTRYSIGGLSPFSEYA 75
Query: 317 FQVVGKNELGDG 328
F+V+ N +G G
Sbjct: 76 FRVLAVNSIGRG 87
>pdb|1J1X|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ls93a Complexed
With Hen Egg White Lysozyme
Length = 107
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNG 40
D TL IN V ++D G+Y C+ SN
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSNA 93
>pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
pdb|1NDG|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
pdb|1NDM|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-26
Complexed With Lysozyme
pdb|1XGU|A Chain A, Structure For Antibody Hyhel-63 Y33f Mutant Complexed
With Hen Egg Lysozyme
Length = 214
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNG 40
D TL IN V ++D G+Y C+ SN
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSNS 93
>pdb|3HFM|L Chain L, Structure Of An Antibody-Antigen Complex. Crystal
Structure Of The HyHEL-10 Fab-Lysozyme Complex
Length = 214
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSN 39
D TL IN V ++D G+Y C+ SN
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSN 92
>pdb|1C08|A Chain A, Crystal Structure Of Hyhel-10 Fv-Hen Lysozyme Complex
pdb|1IC4|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a)-Hen
Lysozyme Complex
pdb|1IC5|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd99a)-Hen
Lysozyme Complex
pdb|1IC7|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a99a)-Hen
Lysozyme Complex
pdb|1UA6|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Sfsf Complexed
With Hen Egg White Lysozyme Complex
pdb|1UAC|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Sfsf Complexed
With Turkey White Lysozyme
pdb|2DQC|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hy33f) Complexed
With Hen Egg Lysozyme
pdb|2DQD|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy50f)
Complexed With Hen Egg Lysozyme
pdb|2DQE|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy53a)
Complexed With Hen Egg Lysozyme
pdb|2DQF|A Chain A, Crystal Structure Of Hyhel-10 Fv Mutant (Y33ay53a)
Complexed With Hen Egg Lysozyme
pdb|2DQF|D Chain D, Crystal Structure Of Hyhel-10 Fv Mutant (Y33ay53a)
Complexed With Hen Egg Lysozyme
pdb|2DQG|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy53f)
Complexed With Hen Egg Lysozyme
pdb|2DQH|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy58a)
Complexed With Hen Egg Lysozyme
pdb|2DQJ|L Chain L, Crystal Structure Of Hyhel-10 Fv (Wild-Type) Complexed
With Hen Egg Lysozyme At 1.8a Resolution
Length = 107
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSN 39
D TL IN V ++D G+Y C+ SN
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSN 92
>pdb|1OPG|L Chain L, Opg2 Fab Fragment
pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex
Length = 214
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNG 40
D TL IN V ++D G+Y C+ SN
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSNS 93
>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Mouse Myosin-Binding Protein C, Fast-Type Homolog
Length = 111
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 398 NSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
+ YL EY +G+++W+P P T+ L F+VVG N G
Sbjct: 41 DGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAG 90
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 263 LEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 322
L+W P G Y++ Y +G+++W+P P T+ L F+VVG
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 323 NELG 326
N G
Sbjct: 87 NIAG 90
>pdb|3OG4|B Chain B, The Crystal Structure Of Human Interferon Lambda 1
Complexed With Its High Affinity Receptor In Space Group
P21212
pdb|3OG6|B Chain B, The Crystal Structure Of Human Interferon Lambda 1
Complexed With Its High Affinity Receptor In Space Group
P212121
Length = 226
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 249 PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW 291
P N+T ++ FSV L WLPG G P +V + + W
Sbjct: 9 PQNVTLLSQNFSVYLTWLPGL-GNPQDVTYFVAYQSSPTRRRW 50
>pdb|2DYP|D Chain D, Crystal Structure Of Lilrb2(Lir2ILT4CD85D) COMPLEXED WITH
Hla-G
Length = 196
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 108 VMQNGSLLFTRVNQNHQGRYTCTPYN-AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV 166
+++NG + H GRY C Y+ A ++ S + V+ P T+ +
Sbjct: 54 LVKNGQFRIPSITWEHTGRYGCQYYSRARWSELSDPLVLVMTGAYPKPTLSAQPSPVVTS 113
Query: 167 GESVDMHCEAQEAEG 181
G V + CE+Q A G
Sbjct: 114 GGRVTLQCESQVAFG 128
>pdb|2ZNW|A Chain A, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
pdb|2ZNW|B Chain B, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
Length = 242
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSN 39
D TL IN V ++D G+Y C+ SN
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSN 92
>pdb|2GW5|A Chain A, Crystal Structure Of Lir-2 (Ilt4) At 1.8 : Differences
From Lir-1 (Ilt2) In Regions Implicated In The Binding
Of The Cytomegalovirus Class I Mhc Homolog Ul18
Length = 197
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 108 VMQNGSLLFTRVNQNHQGRYTCTPYN-AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV 166
+++NG + H GRY C Y+ A ++ S + V+ P T+ +
Sbjct: 54 LVKNGQFHIPSITWEHTGRYGCQYYSRARWSELSDPLVLVMTGAYPKPTLSAQPSPVVTS 113
Query: 167 GESVDMHCEAQEAEG 181
G V + CE+Q A G
Sbjct: 114 GGRVTLQCESQVAFG 128
>pdb|1X4Y|A Chain A, Solution Structure Of The 3rd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 114
Score = 28.5 bits (62), Expect = 8.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 426 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
+I+ L P T+Y+ ++ NE G+ SN+++ +TK
Sbjct: 72 SISHLQPETSYDIKMQCFNEGGESEFSNVMICETK 106
>pdb|2ZNX|A Chain A, 5-Fluorotryptophan Incorporated Scfv10 Complexed To Hen
Egg Lysozyme
pdb|2ZNX|B Chain B, 5-Fluorotryptophan Incorporated Scfv10 Complexed To Hen
Egg Lysozyme
Length = 242
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSN 39
D TL IN V ++D G+Y C+ SN
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSN 92
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 157 KPEAM--YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNIT 210
KP +M Y+ GES C+ +G PT+TW R+ V R ++
Sbjct: 20 KPRSMTVYE---GESARFSCDT---DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 211 IEGLRRVDFGYYECVVSN 228
I ++ D G Y VV N
Sbjct: 74 ISSVQASDEGNYSVVVEN 91
>pdb|1LWR|A Chain A, Solution Structure Of The Ncam Fibronectin Type Iii Module
2
Length = 96
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455
YL +YR + +W P P GS + + L YE VV +N+ G ++ V
Sbjct: 36 YLVKYRALAS-EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFV 90
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 426 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
TI L P TY +V+ +GDG LS+ + V T+
Sbjct: 79 TIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,629,695
Number of Sequences: 62578
Number of extensions: 640895
Number of successful extensions: 2371
Number of sequences better than 100.0: 185
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1906
Number of HSP's gapped (non-prelim): 420
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)