Query psy535
Match_columns 460
No_of_seqs 253 out of 2198
Neff 11.8
Searched_HMMs 46136
Date Sat Aug 17 00:20:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4221|consensus 100.0 2.3E-53 5E-58 395.1 38.9 423 1-460 176-711 (1381)
2 KOG3513|consensus 100.0 1E-52 2.2E-57 392.8 43.0 413 7-459 282-711 (1051)
3 KOG3513|consensus 100.0 3.7E-50 7.9E-55 375.7 44.3 422 2-459 368-814 (1051)
4 KOG4221|consensus 100.0 2.2E-43 4.8E-48 328.9 40.7 409 7-459 85-610 (1381)
5 KOG4222|consensus 100.0 8.7E-38 1.9E-42 290.1 23.5 403 8-453 177-614 (1281)
6 KOG4222|consensus 100.0 3.5E-32 7.5E-37 253.2 22.1 426 4-459 263-740 (1281)
7 KOG4194|consensus 100.0 1.5E-27 3.2E-32 208.8 18.6 218 18-242 574-796 (873)
8 KOG4194|consensus 99.9 2E-24 4.2E-29 189.4 21.1 264 56-328 503-787 (873)
9 PHA02785 IL-beta-binding prote 99.9 7.1E-24 1.5E-28 185.5 24.4 210 11-232 74-317 (326)
10 PHA02785 IL-beta-binding prote 99.9 1.7E-22 3.7E-27 176.8 24.4 248 67-326 37-316 (326)
11 KOG0196|consensus 99.8 1.5E-17 3.3E-22 151.4 20.1 214 220-459 306-534 (996)
12 PHA02826 IL-1 receptor-like pr 99.8 1.3E-17 2.8E-22 136.7 17.3 158 64-230 30-211 (227)
13 PHA02826 IL-1 receptor-like pr 99.8 2.3E-17 5E-22 135.2 13.8 112 17-137 97-213 (227)
14 cd05851 Ig3_Contactin-1 Third 99.7 1.4E-15 3.1E-20 105.7 10.4 87 56-146 1-87 (88)
15 cd05762 Ig8_MLCK Eighth immuno 99.6 4.1E-15 8.8E-20 105.5 11.1 91 57-152 1-94 (98)
16 cd04975 Ig4_SCFR_like Fourth i 99.6 6.7E-15 1.5E-19 104.3 10.6 82 64-146 11-99 (101)
17 cd05852 Ig5_Contactin-1 Fifth 99.6 3.8E-15 8.3E-20 99.0 8.6 72 71-145 1-72 (73)
18 cd05771 IgC_Tapasin_R Tapasin- 99.6 2.9E-14 6.2E-19 109.2 13.3 116 19-135 2-131 (139)
19 cd05745 Ig3_Peroxidasin Third 99.6 6.4E-15 1.4E-19 99.1 8.6 73 70-145 1-73 (74)
20 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.9E-14 4E-19 97.4 10.0 75 71-146 1-75 (76)
21 cd05865 Ig1_NCAM-1 First immun 99.6 2.5E-14 5.4E-19 100.6 10.9 86 60-148 4-95 (96)
22 cd04968 Ig3_Contactin_like Thi 99.6 5.1E-14 1.1E-18 98.5 10.7 87 56-146 1-87 (88)
23 cd05868 Ig4_NrCAM Fourth immun 99.6 2.8E-14 6.1E-19 96.2 9.0 75 71-146 1-75 (76)
24 cd05892 Ig_Myotilin_C C-termin 99.6 3.6E-14 7.9E-19 94.6 9.0 70 74-145 1-74 (75)
25 cd05747 Ig5_Titin_like M5, fif 99.6 6.3E-14 1.4E-18 98.8 10.7 85 55-142 2-89 (92)
26 cd05728 Ig4_Contactin-2-like F 99.5 4.7E-14 1E-18 97.6 9.4 83 59-145 2-84 (85)
27 cd05730 Ig3_NCAM-1_like Third 99.5 6E-14 1.3E-18 99.8 10.1 82 64-147 11-93 (95)
28 cd05723 Ig4_Neogenin Fourth im 99.5 6.8E-14 1.5E-18 93.1 9.6 70 73-145 1-70 (71)
29 cd05863 Ig2_VEGFR-3 Second imm 99.5 3E-14 6.5E-19 92.1 7.5 67 74-148 1-67 (67)
30 cd05760 Ig2_PTK7 Second immuno 99.5 7.7E-14 1.7E-18 94.4 9.5 75 74-149 1-75 (77)
31 cd05737 Ig_Myomesin_like_C C-t 99.5 8.3E-14 1.8E-18 98.1 9.9 81 62-143 7-89 (92)
32 cd05851 Ig3_Contactin-1 Third 99.5 1.2E-13 2.6E-18 96.0 10.5 87 151-241 1-87 (88)
33 cd05893 Ig_Palladin_C C-termin 99.5 5.9E-14 1.3E-18 93.8 8.5 70 74-145 1-74 (75)
34 cd05864 Ig2_VEGFR-2 Second imm 99.5 5.7E-14 1.2E-18 92.1 8.0 70 74-148 1-70 (70)
35 cd05859 Ig4_PDGFR-alpha Fourth 99.5 1.2E-13 2.7E-18 98.1 10.0 81 65-147 12-100 (101)
36 cd04969 Ig5_Contactin_like Fif 99.5 8.8E-14 1.9E-18 93.3 8.8 72 71-145 1-72 (73)
37 cd05866 Ig1_NCAM-2 First immun 99.5 2.9E-13 6.3E-18 94.1 11.3 84 60-148 4-91 (92)
38 cd05722 Ig1_Neogenin First imm 99.5 1.9E-13 4.1E-18 97.1 10.7 87 59-147 2-94 (95)
39 cd05850 Ig1_Contactin-2 First 99.5 3.7E-13 8E-18 94.9 11.9 81 57-139 2-86 (94)
40 cd05762 Ig8_MLCK Eighth immuno 99.5 2.6E-13 5.7E-18 96.2 11.0 93 152-249 1-97 (98)
41 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 2.1E-13 4.5E-18 94.2 10.1 77 65-143 4-83 (86)
42 cd05869 Ig5_NCAM-1 Fifth immun 99.5 2.4E-13 5.2E-18 96.9 10.7 89 56-145 2-96 (97)
43 cd04978 Ig4_L1-NrCAM_like Four 99.5 1.5E-13 3.3E-18 93.3 9.2 75 71-146 1-75 (76)
44 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 1.6E-13 3.6E-18 92.0 9.1 72 74-147 1-72 (74)
45 cd04976 Ig2_VEGFR Second immun 99.5 1.3E-13 2.9E-18 91.4 8.5 71 74-148 1-71 (71)
46 cd05854 Ig6_Contactin-2 Sixth 99.5 3.2E-13 7E-18 93.0 10.7 79 72-152 1-85 (85)
47 cd05848 Ig1_Contactin-5 First 99.5 3.9E-13 8.5E-18 94.7 11.1 80 57-138 2-85 (94)
48 cd05735 Ig8_DSCAM Eight immuno 99.5 4.2E-13 9.1E-18 93.2 10.8 78 71-152 1-85 (88)
49 cd05853 Ig6_Contactin-4 Sixth 99.5 2.4E-13 5.2E-18 92.3 9.2 79 72-152 1-85 (85)
50 cd05849 Ig1_Contactin-1 First 99.5 4.6E-13 9.9E-18 93.9 10.8 80 57-139 2-85 (93)
51 cd07693 Ig1_Robo First immunog 99.5 5.2E-13 1.1E-17 96.5 11.4 82 56-138 1-90 (100)
52 cd05740 Ig_CEACAM_D4 Fourth im 99.5 3.3E-13 7.3E-18 94.1 9.8 81 62-148 9-90 (91)
53 cd05724 Ig2_Robo Second immuno 99.5 4.3E-13 9.4E-18 93.6 10.4 76 62-139 2-78 (86)
54 PF07679 I-set: Immunoglobulin 99.5 2.8E-13 6E-18 95.6 9.4 87 57-144 1-88 (90)
55 cd05752 Ig1_FcgammaR_like Frst 99.5 1.6E-13 3.5E-18 92.2 7.7 68 57-134 1-68 (78)
56 cd05746 Ig4_Peroxidasin Fourth 99.5 1.8E-13 3.9E-18 90.5 7.6 67 74-143 1-67 (69)
57 cd04972 Ig_TrkABC_d4 Fourth do 99.5 3.6E-13 7.7E-18 94.5 9.3 83 62-145 6-89 (90)
58 cd04970 Ig6_Contactin_like Six 99.5 4.9E-13 1.1E-17 92.7 9.4 79 72-152 1-85 (85)
59 cd05744 Ig_Myotilin_C_like Imm 99.5 5.1E-13 1.1E-17 89.7 9.1 70 74-145 1-74 (75)
60 cd05870 Ig5_NCAM-2 Fifth immun 99.5 9.3E-13 2E-17 94.0 10.9 87 56-144 2-96 (98)
61 cd05891 Ig_M-protein_C C-termi 99.5 6.4E-13 1.4E-17 93.2 9.7 81 62-143 7-89 (92)
62 cd05758 Ig5_KIRREL3-like Fifth 99.4 1.4E-12 3E-17 93.1 10.7 86 56-142 2-95 (98)
63 cd05876 Ig3_L1-CAM Third immun 99.4 5.8E-13 1.3E-17 88.5 8.2 68 74-144 1-68 (71)
64 cd04973 Ig1_FGFR First immunog 99.4 9.7E-13 2.1E-17 89.5 9.4 74 63-141 1-74 (79)
65 cd04977 Ig1_NCAM-1_like First 99.4 2.2E-12 4.7E-17 90.6 11.3 84 59-147 3-91 (92)
66 cd05725 Ig3_Robo Third immunog 99.4 6.7E-13 1.4E-17 87.9 8.2 67 74-144 1-67 (69)
67 cd05726 Ig4_Robo Fhird immunog 99.4 1E-12 2.2E-17 92.2 9.4 75 71-146 1-81 (90)
68 cd05857 Ig2_FGFR Second immuno 99.4 1E-12 2.2E-17 91.4 9.2 78 66-144 4-83 (85)
69 cd07702 Ig2_VEGFR-1 Second imm 99.4 8.9E-13 1.9E-17 86.5 8.3 71 74-147 1-71 (72)
70 cd05773 Ig8_hNephrin_like Eigh 99.4 2.1E-12 4.5E-17 93.7 11.0 95 54-152 2-108 (109)
71 cd05743 Ig_Perlecan_D2_like Im 99.4 1E-12 2.2E-17 89.3 8.6 74 71-147 1-77 (78)
72 cd04974 Ig3_FGFR Third immunog 99.4 1.8E-12 3.8E-17 90.8 9.5 75 71-146 1-89 (90)
73 cd04968 Ig3_Contactin_like Thi 99.4 3.2E-12 6.9E-17 89.3 10.7 86 152-241 2-87 (88)
74 cd05749 Ig2_Tyro3_like Second 99.4 1.3E-12 2.7E-17 88.5 8.3 73 60-139 2-74 (81)
75 cd05732 Ig5_NCAM-1_like Fifth 99.4 2E-12 4.3E-17 92.3 9.8 87 56-144 2-94 (96)
76 cd05852 Ig5_Contactin-1 Fifth 99.4 1.7E-12 3.7E-17 86.3 8.3 72 167-241 1-73 (73)
77 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 2.2E-12 4.7E-17 84.8 8.7 67 71-143 1-67 (69)
78 cd05764 Ig_2 Subgroup of the i 99.4 2.9E-12 6.4E-17 86.3 9.2 69 71-142 1-70 (74)
79 cd05763 Ig_1 Subgroup of the i 99.4 2.3E-12 5E-17 87.0 8.7 72 74-146 1-74 (75)
80 cd05858 Ig3_FGFR-2 Third immun 99.4 2.6E-12 5.7E-17 90.0 9.1 75 71-146 1-89 (90)
81 cd05748 Ig_Titin_like Immunogl 99.4 2.9E-12 6.2E-17 86.3 8.9 68 73-143 1-71 (74)
82 KOG3515|consensus 99.4 3.6E-11 7.8E-16 112.1 18.2 351 19-384 362-733 (741)
83 cd05756 Ig1_IL1R_like First im 99.4 2.7E-12 5.8E-17 90.0 8.2 79 64-144 7-92 (94)
84 cd05728 Ig4_Contactin-2-like F 99.4 4.2E-12 9.2E-17 87.8 9.1 81 157-241 5-85 (85)
85 cd05855 Ig_TrkB_d5 Fifth domai 99.4 4.7E-12 1E-16 84.6 8.8 67 75-142 2-74 (79)
86 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 5.1E-12 1.1E-16 85.8 8.9 67 75-142 2-76 (81)
87 cd05856 Ig2_FGFRL1-like Second 99.4 2.7E-12 5.9E-17 88.8 7.8 73 67-141 5-77 (82)
88 cd05736 Ig2_Follistatin_like S 99.4 8.4E-12 1.8E-16 84.5 9.8 72 74-146 1-73 (76)
89 cd05733 Ig6_L1-CAM_like Sixth 99.4 5.5E-12 1.2E-16 85.3 8.4 64 74-138 1-69 (77)
90 cd05731 Ig3_L1-CAM_like Third 99.3 4.5E-12 9.8E-17 84.8 7.7 68 74-144 1-68 (71)
91 PF00041 fn3: Fibronectin type 99.3 4.7E-12 1E-16 88.4 8.0 84 344-452 1-85 (85)
92 cd05734 Ig7_DSCAM Seventh immu 99.3 7.2E-12 1.6E-16 85.5 8.7 72 74-147 1-78 (79)
93 cd05873 Ig_Sema4D_like Immunog 99.3 1E-11 2.3E-16 84.6 9.1 70 62-135 2-71 (87)
94 cd05874 Ig6_NrCAM Sixth immuno 99.3 1.2E-11 2.5E-16 83.4 9.0 65 74-139 1-70 (77)
95 cd05745 Ig3_Peroxidasin Third 99.3 7.8E-12 1.7E-16 84.0 8.1 73 166-241 1-74 (74)
96 cd05735 Ig8_DSCAM Eight immuno 99.3 1.9E-11 4.1E-16 84.9 10.2 78 167-249 1-88 (88)
97 cd05875 Ig6_hNeurofascin_like 99.3 1.4E-11 2.9E-16 83.1 9.1 65 74-139 1-70 (77)
98 cd05747 Ig5_Titin_like M5, fif 99.3 1.4E-11 3E-16 86.8 9.4 85 151-239 3-91 (92)
99 cd04967 Ig1_Contactin First Ig 99.3 2.8E-11 6.1E-16 85.1 10.3 80 57-138 2-85 (91)
100 cd05723 Ig4_Neogenin Fourth im 99.3 1.7E-11 3.7E-16 81.4 8.7 70 169-241 1-71 (71)
101 cd05757 Ig2_IL1R_like Second i 99.3 2.3E-11 5.1E-16 84.6 9.1 80 65-147 4-87 (92)
102 cd05765 Ig_3 Subgroup of the i 99.3 1.9E-11 4E-16 84.2 8.5 73 71-144 1-79 (81)
103 cd05898 Ig5_KIRREL3 Fifth immu 99.3 5E-11 1.1E-15 83.2 10.5 85 56-141 2-94 (98)
104 cd05867 Ig4_L1-CAM_like Fourth 99.3 3.4E-11 7.3E-16 81.4 9.5 71 167-241 1-75 (76)
105 cd05892 Ig_Myotilin_C C-termin 99.3 2.1E-11 4.5E-16 81.3 8.0 69 170-241 1-75 (75)
106 cd04969 Ig5_Contactin_like Fif 99.3 3.4E-11 7.4E-16 80.7 8.3 72 167-241 1-73 (73)
107 cd05737 Ig_Myomesin_like_C C-t 99.3 3.3E-11 7E-16 84.9 8.5 76 163-241 12-92 (92)
108 cd05753 Ig2_FcgammaR_like Seco 99.3 2E-11 4.4E-16 83.5 7.2 78 62-147 5-82 (83)
109 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 4.6E-11 1E-15 82.5 9.1 76 163-241 6-86 (86)
110 cd05893 Ig_Palladin_C C-termin 99.3 3.2E-11 6.8E-16 80.6 7.9 69 170-241 1-75 (75)
111 cd05865 Ig1_NCAM-1 First immun 99.3 1.2E-10 2.6E-15 81.9 11.0 81 157-241 6-95 (96)
112 cd04975 Ig4_SCFR_like Fourth i 99.2 5.1E-11 1.1E-15 84.5 8.6 76 163-242 14-100 (101)
113 cd05754 Ig3_Perlecan_like Thir 99.2 4E-11 8.6E-16 83.2 7.8 77 62-143 7-83 (85)
114 cd05868 Ig4_NrCAM Fourth immun 99.2 7.1E-11 1.5E-15 79.6 8.8 71 167-241 1-75 (76)
115 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 7E-11 1.5E-15 77.6 8.5 68 167-239 1-68 (69)
116 cd05895 Ig_Pro_neuregulin-1 Im 99.2 3.7E-11 8.1E-16 81.3 7.5 68 74-141 1-73 (76)
117 cd05771 IgC_Tapasin_R Tapasin- 99.2 2.3E-10 4.9E-15 87.6 12.7 111 113-229 2-130 (139)
118 cd04979 Ig_Semaphorin_C Immuno 99.2 8.7E-11 1.9E-15 82.2 9.4 84 62-149 2-87 (89)
119 cd05725 Ig3_Robo Third immunog 99.2 7.7E-11 1.7E-15 78.0 8.5 68 170-241 1-69 (69)
120 cd05726 Ig4_Robo Fhird immunog 99.2 1.4E-10 3.1E-15 81.3 10.3 75 167-244 1-84 (90)
121 cd05727 Ig2_Contactin-2-like S 99.2 4E-11 8.6E-16 82.9 7.2 74 64-137 11-85 (96)
122 cd05750 Ig_Pro_neuregulin Immu 99.2 6.1E-11 1.3E-15 80.2 8.1 67 74-141 1-72 (75)
123 cd04976 Ig2_VEGFR Second immun 99.2 5.6E-11 1.2E-15 78.8 7.6 69 170-241 1-69 (71)
124 KOG3515|consensus 99.2 2.4E-10 5.3E-15 106.7 14.4 318 10-336 51-395 (741)
125 cd04978 Ig4_L1-NrCAM_like Four 99.2 9.4E-11 2E-15 79.5 8.8 72 167-241 1-75 (76)
126 cd05876 Ig3_L1-CAM Third immun 99.2 8.6E-11 1.9E-15 78.0 8.0 69 170-241 1-70 (71)
127 cd05730 Ig3_NCAM-1_like Third 99.2 1.8E-10 3.8E-15 81.9 10.0 77 163-242 14-93 (95)
128 cd05863 Ig2_VEGFR-3 Second imm 99.2 7.5E-11 1.6E-15 76.2 7.3 65 170-241 1-65 (67)
129 cd05746 Ig4_Peroxidasin Fourth 99.2 5.9E-11 1.3E-15 78.4 7.0 67 170-239 1-68 (69)
130 cd04973 Ig1_FGFR First immunog 99.2 1.7E-10 3.6E-15 78.5 9.4 74 163-240 5-78 (79)
131 cd05742 Ig1_VEGFR_like First i 99.2 7.1E-11 1.5E-15 81.6 7.7 76 71-146 1-83 (84)
132 cd05882 Ig1_Necl-1 First (N-te 99.2 1.1E-10 2.5E-15 81.7 8.6 69 64-133 5-83 (95)
133 cd05773 Ig8_hNephrin_like Eigh 99.2 1.8E-10 3.9E-15 83.6 9.8 91 149-243 2-106 (109)
134 cd04972 Ig_TrkABC_d4 Fourth do 99.2 1.8E-10 3.9E-15 80.8 9.3 76 163-241 11-90 (90)
135 cd05859 Ig4_PDGFR-alpha Fourth 99.2 1.3E-10 2.9E-15 82.6 8.6 77 163-242 14-100 (101)
136 PF07679 I-set: Immunoglobulin 99.2 1.3E-10 2.8E-15 81.9 8.6 85 153-241 2-90 (90)
137 cd05864 Ig2_VEGFR-2 Second imm 99.2 1.1E-10 2.4E-15 76.5 7.5 68 170-241 1-68 (70)
138 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.5E-10 5.4E-15 78.5 9.4 78 71-149 1-83 (84)
139 cd05744 Ig_Myotilin_C_like Imm 99.2 1.9E-10 4.2E-15 77.2 8.4 69 170-241 1-75 (75)
140 cd05748 Ig_Titin_like Immunogl 99.2 2.3E-10 4.9E-15 77.0 8.6 70 169-241 1-74 (74)
141 cd05857 Ig2_FGFR Second immuno 99.2 2.8E-10 6E-15 79.1 9.1 76 163-241 5-85 (85)
142 cd05848 Ig1_Contactin-5 First 99.2 5.5E-10 1.2E-14 78.7 10.5 67 166-235 18-87 (94)
143 cd05869 Ig5_NCAM-1 Fifth immun 99.2 4E-10 8.6E-15 80.2 9.9 87 151-241 2-97 (97)
144 cd05870 Ig5_NCAM-2 Fifth immun 99.2 3.5E-10 7.5E-15 80.7 9.6 75 163-240 12-97 (98)
145 cd05854 Ig6_Contactin-2 Sixth 99.2 4.2E-10 9.2E-15 77.5 9.7 72 168-243 1-83 (85)
146 cd05764 Ig_2 Subgroup of the i 99.1 4E-10 8.7E-15 75.8 9.1 72 167-241 1-74 (74)
147 cd07693 Ig1_Robo First immunog 99.1 3.8E-10 8.1E-15 81.5 9.5 87 151-241 1-99 (100)
148 cd05853 Ig6_Contactin-4 Sixth 99.1 4.2E-10 9.1E-15 76.4 8.9 75 168-244 1-84 (85)
149 cd05891 Ig_M-protein_C C-termi 99.1 3.7E-10 7.9E-15 79.3 8.9 76 163-241 12-92 (92)
150 cd05740 Ig_CEACAM_D4 Fourth im 99.1 9.6E-10 2.1E-14 76.7 10.6 74 163-241 14-90 (91)
151 cd05743 Ig_Perlecan_D2_like Im 99.1 4.5E-10 9.7E-15 76.3 8.7 70 167-239 1-74 (78)
152 cd05849 Ig1_Contactin-1 First 99.1 5.8E-10 1.3E-14 78.1 9.4 66 167-235 19-86 (93)
153 cd05845 Ig2_L1-CAM_like Second 99.1 2.6E-10 5.6E-15 78.7 6.9 72 63-136 10-83 (95)
154 cd05850 Ig1_Contactin-2 First 99.1 1.1E-09 2.5E-14 77.1 10.4 67 166-235 18-87 (94)
155 cd05866 Ig1_NCAM-2 First immun 99.1 7.6E-10 1.6E-14 77.0 9.3 74 163-240 11-90 (92)
156 cd05763 Ig_1 Subgroup of the i 99.1 6.1E-10 1.3E-14 75.1 8.7 69 170-241 1-74 (75)
157 cd05729 Ig2_FGFR_like Second i 99.1 8.4E-10 1.8E-14 76.8 9.4 74 67-141 5-80 (85)
158 cd05856 Ig2_FGFRL1-like Second 99.1 5.6E-10 1.2E-14 77.1 8.4 75 163-240 5-81 (82)
159 cd07701 Ig1_Necl-3 First (N-te 99.1 8.5E-10 1.8E-14 77.7 9.3 80 63-144 4-93 (95)
160 cd05732 Ig5_NCAM-1_like Fifth 99.1 9.5E-10 2.1E-14 78.4 9.5 76 163-241 12-96 (96)
161 cd05885 Ig2_Necl-4 Second immu 99.1 1.1E-09 2.4E-14 72.9 8.9 65 74-138 2-69 (80)
162 cd05731 Ig3_L1-CAM_like Third 99.1 5.9E-10 1.3E-14 74.4 7.5 68 170-241 1-70 (71)
163 cd05760 Ig2_PTK7 Second immuno 99.1 6.4E-10 1.4E-14 75.1 7.6 67 170-239 1-70 (77)
164 cd05756 Ig1_IL1R_like First im 99.1 8.3E-10 1.8E-14 77.4 8.2 76 163-241 10-94 (94)
165 cd04970 Ig6_Contactin_like Six 99.1 8.2E-10 1.8E-14 76.5 8.0 73 168-244 1-84 (85)
166 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 7.9E-10 1.7E-14 75.0 7.7 66 172-240 3-79 (81)
167 cd05897 Ig2_IL1R2_like Second 99.1 1.2E-09 2.6E-14 75.7 8.6 73 66-139 5-82 (95)
168 cd04974 Ig3_FGFR Third immunog 99.1 6.9E-10 1.5E-14 77.6 7.5 72 167-241 1-89 (90)
169 cd05855 Ig_TrkB_d5 Fifth domai 99.1 7.6E-10 1.7E-14 74.0 7.1 66 172-240 3-77 (79)
170 smart00408 IGc2 Immunoglobulin 99.1 1.5E-09 3.3E-14 70.6 8.4 63 70-136 1-63 (63)
171 cd05722 Ig1_Neogenin First imm 99.0 2E-09 4.4E-14 76.3 9.1 79 156-239 4-93 (95)
172 cd05749 Ig2_Tyro3_like Second 99.0 1E-09 2.3E-14 74.2 7.1 71 157-235 4-75 (81)
173 cd07702 Ig2_VEGFR-1 Second imm 99.0 1.5E-09 3.3E-14 71.2 7.5 67 170-239 1-68 (72)
174 cd05765 Ig_3 Subgroup of the i 99.0 3E-09 6.5E-14 73.1 8.7 72 167-241 1-81 (81)
175 cd05858 Ig3_FGFR-2 Third immun 99.0 3.1E-09 6.6E-14 74.4 8.8 72 167-241 1-89 (90)
176 cd05724 Ig2_Robo Second immuno 99.0 4.3E-09 9.3E-14 73.3 9.5 70 163-234 7-78 (86)
177 cd05738 Ig2_RPTP_IIa_LAR_like 99.0 2.3E-09 5E-14 71.8 7.6 69 170-241 1-73 (74)
178 PF13895 Ig_2: Immunoglobulin 99.0 3.1E-09 6.8E-14 73.0 8.4 72 66-148 9-80 (80)
179 cd05758 Ig5_KIRREL3-like Fifth 99.0 5.1E-09 1.1E-13 74.7 9.4 84 151-239 2-97 (98)
180 cd05860 Ig4_SCFR Fourth immuno 99.0 8.9E-09 1.9E-13 71.2 9.8 83 64-148 11-99 (101)
181 cd05871 Ig_Semaphorin_classIII 99.0 7.4E-09 1.6E-13 72.1 9.4 78 66-148 6-88 (91)
182 cd05742 Ig1_VEGFR_like First i 99.0 5.5E-09 1.2E-13 72.1 8.7 72 167-241 1-83 (84)
183 PF00047 ig: Immunoglobulin do 99.0 1.4E-09 3E-14 70.9 5.3 59 71-131 1-64 (64)
184 cd04977 Ig1_NCAM-1_like First 99.0 7.3E-09 1.6E-13 72.7 9.2 79 157-240 6-91 (92)
185 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 8.8E-09 1.9E-13 71.4 9.0 77 65-141 9-99 (104)
186 cd05736 Ig2_Follistatin_like S 98.9 5.3E-09 1.2E-13 70.7 7.8 70 170-242 1-74 (76)
187 cd05734 Ig7_DSCAM Seventh immu 98.9 4.6E-09 1E-13 71.5 7.4 67 170-239 1-77 (79)
188 cd05754 Ig3_Perlecan_like Thir 98.9 1.1E-08 2.4E-13 70.9 9.3 73 163-239 12-84 (85)
189 cd00063 FN3 Fibronectin type 3 98.9 2.3E-08 5E-13 70.8 11.1 92 343-459 1-93 (93)
190 cd05717 Ig1_Necl-1-3_like Firs 98.9 1.3E-08 2.9E-13 72.1 9.4 79 64-144 5-93 (95)
191 cd04967 Ig1_Contactin First Ig 98.9 1.5E-08 3.3E-13 71.1 9.5 66 166-235 18-87 (91)
192 cd05872 Ig_Sema4B_like Immunog 98.9 1.6E-08 3.5E-13 68.4 9.1 79 64-148 4-82 (85)
193 cd05752 Ig1_FcgammaR_like Frst 98.9 5.2E-09 1.1E-13 70.4 6.7 66 153-229 2-68 (78)
194 cd05862 Ig1_VEGFR First immuno 98.9 1.1E-08 2.3E-13 70.6 8.4 76 71-146 1-84 (86)
195 cd05759 Ig2_KIRREL3-like Secon 98.9 1.5E-08 3.2E-13 69.6 9.0 73 74-147 2-81 (82)
196 cd05750 Ig_Pro_neuregulin Immu 98.9 5.8E-09 1.2E-13 70.5 6.8 65 170-237 1-73 (75)
197 cd05751 Ig1_LILRB1_like First 98.9 7.7E-09 1.7E-13 72.4 7.0 87 57-148 3-90 (91)
198 cd05774 Ig_CEACAM_D1 First imm 98.9 2.1E-08 4.6E-13 71.3 9.1 75 62-137 4-95 (105)
199 cd07690 Ig1_CD4 First immunogl 98.8 1.1E-08 2.5E-13 71.1 6.9 70 67-137 3-90 (94)
200 cd05861 Ig1_PDGFR-alphabeta Fr 98.8 3.9E-08 8.4E-13 67.6 9.5 73 167-242 1-83 (84)
201 cd05874 Ig6_NrCAM Sixth immuno 98.8 3.3E-08 7.1E-13 66.6 8.6 64 170-236 1-72 (77)
202 cd05757 Ig2_IL1R_like Second i 98.8 2.6E-08 5.5E-13 69.4 8.0 77 163-240 6-85 (92)
203 cd05873 Ig_Sema4D_like Immunog 98.8 4.5E-08 9.7E-13 66.8 8.9 63 163-229 7-70 (87)
204 smart00410 IG_like Immunoglobu 98.8 1.1E-07 2.3E-12 66.2 11.1 79 65-148 3-85 (86)
205 smart00409 IG Immunoglobulin. 98.8 1.1E-07 2.3E-12 66.2 11.1 79 65-148 3-85 (86)
206 cd05733 Ig6_L1-CAM_like Sixth 98.8 2E-08 4.3E-13 67.8 6.9 63 170-235 1-71 (77)
207 cd05879 Ig_P0 Immunoglobulin ( 98.8 8.5E-08 1.9E-12 69.8 10.5 85 63-147 5-115 (116)
208 PF13927 Ig_3: Immunoglobulin 98.8 1.8E-08 3.8E-13 68.2 6.7 74 57-133 2-75 (75)
209 cd05875 Ig6_hNeurofascin_like 98.8 6.5E-08 1.4E-12 65.1 8.9 64 170-236 1-72 (77)
210 cd05729 Ig2_FGFR_like Second i 98.8 6.5E-08 1.4E-12 67.2 9.2 75 163-240 5-84 (85)
211 cd04979 Ig_Semaphorin_C Immuno 98.8 6.6E-08 1.4E-12 67.6 9.2 76 163-242 7-87 (89)
212 cd05881 Ig1_Necl-2 First (N-te 98.8 9.6E-08 2.1E-12 66.4 9.8 69 64-133 5-83 (95)
213 cd05895 Ig_Pro_neuregulin-1 Im 98.8 3.3E-08 7.1E-13 66.8 6.7 67 170-238 1-75 (76)
214 cd05871 Ig_Semaphorin_classIII 98.8 1.1E-07 2.4E-12 66.2 9.5 76 163-242 7-89 (91)
215 cd05741 Ig_CEACAM_D1_like Firs 98.8 6.2E-08 1.3E-12 68.4 8.3 75 71-147 1-91 (92)
216 cd05882 Ig1_Necl-1 First (N-te 98.7 8E-08 1.7E-12 67.3 8.3 63 163-228 8-83 (95)
217 cd07701 Ig1_Necl-3 First (N-te 98.7 1.1E-07 2.4E-12 66.9 8.4 74 163-240 8-94 (95)
218 cd05898 Ig5_KIRREL3 Fifth immu 98.7 2.2E-07 4.8E-12 65.0 9.4 84 151-239 2-97 (98)
219 cd05727 Ig2_Contactin-2-like S 98.7 9.1E-08 2E-12 66.3 7.1 69 163-233 14-86 (96)
220 cd05753 Ig2_FcgammaR_like Seco 98.7 8.6E-08 1.9E-12 65.6 6.8 65 163-233 10-74 (83)
221 cd05775 Ig_SLAM-CD84_like_N N- 98.7 8E-08 1.7E-12 68.0 6.9 78 70-148 3-96 (97)
222 PHA03376 BARF1; Provisional 98.7 4.8E-07 1.1E-11 68.8 10.8 123 66-194 21-163 (221)
223 smart00408 IGc2 Immunoglobulin 98.6 1.6E-07 3.6E-12 60.8 7.4 63 166-231 1-63 (63)
224 cd05883 Ig2_Necl-2 Second immu 98.6 3.4E-07 7.5E-12 61.2 8.6 75 74-149 2-80 (82)
225 cd05880 Ig_EVA1 Immunoglobulin 98.6 4.3E-07 9.4E-12 66.5 9.7 84 63-146 5-113 (115)
226 cd05845 Ig2_L1-CAM_like Second 98.6 2.5E-07 5.4E-12 64.0 7.0 69 162-232 13-84 (95)
227 PHA03376 BARF1; Provisional 98.6 1E-06 2.2E-11 67.2 10.6 88 7-96 73-163 (221)
228 cd05877 Ig_LP_like Immunoglobu 98.6 5.9E-07 1.3E-11 65.2 9.2 77 70-148 1-102 (106)
229 cd04983 IgV_TCR_alpha_like Imm 98.6 3.6E-07 7.8E-12 66.8 8.1 74 61-135 3-93 (109)
230 cd05900 Ig_Aggrecan Immunoglob 98.5 1.2E-06 2.6E-11 63.2 10.1 78 70-149 1-109 (112)
231 cd05887 Ig1_Nectin-3_like Firs 98.5 9E-07 1.9E-11 61.7 9.0 74 73-146 2-95 (96)
232 cd05862 Ig1_VEGFR First immuno 98.5 6.3E-07 1.4E-11 61.8 8.2 73 167-242 1-85 (86)
233 cd05715 Ig_P0-like Immunoglobu 98.5 1.2E-06 2.5E-11 64.7 10.0 86 62-147 4-115 (116)
234 cd05755 Ig2_ICAM-1_like Second 98.5 5.5E-07 1.2E-11 62.9 7.6 79 59-137 4-87 (100)
235 cd05718 Ig1_PVR_like First imm 98.5 7.5E-07 1.6E-11 63.7 8.6 75 72-148 1-97 (98)
236 cd05896 Ig1_IL1RAPL-1_like Fir 98.5 1E-06 2.2E-11 61.3 8.8 78 163-240 11-103 (104)
237 cd05899 IgV_TCR_beta Immunoglo 98.5 6.4E-07 1.4E-11 65.4 8.3 72 61-134 3-94 (110)
238 KOG4802|consensus 98.5 1.4E-06 3E-11 74.4 11.1 138 289-451 197-342 (516)
239 cd05714 Ig_CSPGs_LP Immunoglob 98.5 1E-06 2.2E-11 63.9 8.7 78 70-149 1-103 (106)
240 PF00041 fn3: Fibronectin type 98.5 9.7E-07 2.1E-11 61.2 8.1 81 248-330 2-84 (85)
241 cd05717 Ig1_Necl-1-3_like Firs 98.5 1.7E-06 3.7E-11 61.2 9.2 74 163-240 8-94 (95)
242 cd05878 Ig_Aggrecan_like Immun 98.5 1.6E-06 3.5E-11 62.9 9.2 77 71-149 2-107 (110)
243 PF00047 ig: Immunoglobulin do 98.5 8.9E-07 1.9E-11 57.4 7.1 58 167-226 1-64 (64)
244 cd05711 Ig_FcalphaRI Immunoglo 98.5 8E-07 1.7E-11 62.4 7.3 88 57-147 2-93 (94)
245 cd07690 Ig1_CD4 First immunogl 98.5 7.4E-07 1.6E-11 62.0 6.8 68 163-233 3-91 (94)
246 cd05713 Ig_MOG_like Immunoglob 98.5 1.4E-06 3E-11 62.5 8.5 76 71-148 1-99 (100)
247 KOG0196|consensus 98.5 1.7E-05 3.6E-10 74.5 17.3 135 205-341 396-537 (996)
248 PHA03270 envelope glycoprotein 98.4 4.5E-05 9.8E-10 66.2 17.9 163 19-195 183-360 (466)
249 PF13895 Ig_2: Immunoglobulin 98.4 1.7E-06 3.6E-11 59.2 7.8 70 163-241 10-80 (80)
250 cd05886 Ig1_Nectin-1_like Firs 98.4 4.1E-06 8.8E-11 59.0 9.7 74 73-148 2-98 (99)
251 cd04980 IgV_L_kappa Immunoglob 98.4 1.5E-06 3.3E-11 63.0 7.6 74 60-133 4-92 (106)
252 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2.9E-06 6.2E-11 60.3 8.9 76 71-148 1-96 (97)
253 cd00099 IgV Immunoglobulin var 98.4 1.6E-06 3.4E-11 62.9 7.6 70 67-136 2-91 (105)
254 cd05774 Ig_CEACAM_D1 First imm 98.4 9E-07 2E-11 63.1 6.0 37 7-43 59-95 (105)
255 cd07694 Ig2_CD4 Second immunog 98.4 3.9E-06 8.5E-11 55.9 8.1 76 66-148 9-85 (88)
256 cd00098 IgC Immunoglobulin Con 98.4 1.3E-06 2.8E-11 62.0 6.4 69 69-137 11-87 (95)
257 cd05761 Ig2_Necl-1-4_like Seco 98.4 4.5E-06 9.7E-11 57.0 8.7 63 74-137 2-70 (82)
258 smart00060 FN3 Fibronectin typ 98.3 5.9E-06 1.3E-10 56.6 9.5 79 345-448 3-82 (83)
259 cd05885 Ig2_Necl-4 Second immu 98.3 3.7E-06 8E-11 56.1 7.8 61 170-233 2-69 (80)
260 cd05902 Ig_Neurocan Immunoglob 98.3 4.1E-06 8.9E-11 60.2 8.4 77 71-149 2-107 (110)
261 PF07686 V-set: Immunoglobulin 98.3 4E-06 8.7E-11 61.9 8.7 74 61-134 6-101 (114)
262 cd07705 Ig2_Necl-1 Second immu 98.3 6.3E-06 1.4E-10 56.2 8.8 63 74-137 2-71 (83)
263 cd05872 Ig_Sema4B_like Immunog 98.3 6E-06 1.3E-10 56.0 8.5 62 163-228 7-68 (85)
264 smart00409 IG Immunoglobulin. 98.3 9.9E-06 2.1E-10 56.1 10.2 76 163-241 5-85 (86)
265 smart00410 IG_like Immunoglobu 98.3 9.9E-06 2.1E-10 56.1 10.2 76 163-241 5-85 (86)
266 cd05888 Ig1_Nectin-4_like Frst 98.3 7.2E-06 1.6E-10 58.4 9.4 74 73-148 2-99 (100)
267 PHA02987 Ig domain OX-2-like p 98.3 9.1E-06 2E-10 62.6 10.3 86 65-151 24-124 (189)
268 cd05889 Ig1_DNAM-1_like First 98.3 8.7E-06 1.9E-10 56.8 9.4 66 73-138 2-87 (96)
269 cd05751 Ig1_LILRB1_like First 98.3 4.5E-06 9.9E-11 58.3 8.1 72 152-229 3-75 (91)
270 cd05860 Ig4_SCFR Fourth immuno 98.3 8.6E-06 1.9E-10 56.6 9.0 77 163-242 14-100 (101)
271 cd05741 Ig_CEACAM_D1_like Firs 98.3 1.6E-06 3.4E-11 61.2 5.5 46 7-52 46-91 (92)
272 cd05897 Ig2_IL1R2_like Second 98.3 5.4E-06 1.2E-10 57.6 7.4 70 163-233 6-81 (95)
273 PHA03269 envelope glycoprotein 98.3 0.00013 2.9E-09 64.3 17.1 205 9-228 275-512 (566)
274 PHA03273 envelope glycoprotein 98.2 0.00016 3.4E-09 63.6 17.5 162 19-194 199-377 (486)
275 cd05884 Ig2_Necl-3 Second immu 98.2 1E-05 2.2E-10 55.1 8.1 63 74-136 2-70 (83)
276 cd05886 Ig1_Nectin-1_like Firs 98.2 3.8E-06 8.2E-11 59.2 6.1 49 6-54 47-99 (99)
277 cd05901 Ig_Versican Immunoglob 98.2 1.9E-05 4.2E-10 56.9 9.7 76 71-148 2-113 (117)
278 cd04982 IgV_TCR_gamma Immunogl 98.2 7.4E-06 1.6E-10 60.5 7.7 72 61-133 3-98 (116)
279 cd05770 IgC_beta2m Class I maj 98.2 3.5E-05 7.7E-10 53.4 9.9 67 69-135 13-83 (93)
280 cd05775 Ig_SLAM-CD84_like_N N- 98.2 3.9E-06 8.5E-11 59.4 5.3 46 8-53 50-96 (97)
281 cd07706 IgV_TCR_delta Immunogl 98.2 8.8E-06 1.9E-10 60.1 7.2 74 60-133 3-93 (116)
282 PF13927 Ig_3: Immunoglobulin 98.1 2.3E-06 5E-11 57.6 3.7 72 152-228 2-75 (75)
283 cd05887 Ig1_Nectin-3_like Firs 98.1 8.3E-06 1.8E-10 56.9 6.2 47 7-53 45-95 (96)
284 cd05716 Ig_pIgR Immunoglobulin 98.1 1.9E-05 4.2E-10 56.2 8.3 69 67-135 3-87 (98)
285 cd07698 IgC_MHC_I_alpha3 Class 98.1 4.1E-05 8.8E-10 53.7 9.7 65 71-135 14-83 (93)
286 PHA03271 envelope glycoprotein 98.1 0.00057 1.2E-08 59.2 17.1 175 6-194 190-385 (490)
287 cd05900 Ig_Aggrecan Immunoglob 98.1 5.1E-05 1.1E-09 54.9 9.2 78 166-243 1-110 (112)
288 cd05877 Ig_LP_like Immunoglobu 98.0 5.2E-05 1.1E-09 54.9 9.3 78 166-243 1-104 (106)
289 cd05772 IgC_SIRP Signal-regula 98.0 6E-05 1.3E-09 54.4 9.2 70 66-137 16-94 (111)
290 cd05888 Ig1_Nectin-4_like Frst 98.0 1.8E-05 3.8E-10 56.4 6.3 47 7-53 48-99 (100)
291 cd04984 IgV_L_lambda Immunoglo 98.0 2.2E-05 4.7E-10 55.9 6.8 67 67-133 2-84 (98)
292 KOG4367|consensus 98.0 6.8E-06 1.5E-10 70.7 4.6 91 340-459 435-529 (699)
293 cd07699 IgC_L Immunoglobulin C 98.0 1.8E-05 3.9E-10 56.2 5.9 69 67-135 13-89 (100)
294 cd05713 Ig_MOG_like Immunoglob 98.0 8.6E-05 1.9E-09 53.1 9.3 35 207-241 65-99 (100)
295 cd05881 Ig1_Necl-2 First (N-te 98.0 0.00012 2.6E-09 51.0 9.5 63 163-228 8-83 (95)
296 cd05714 Ig_CSPGs_LP Immunoglob 98.0 9.4E-05 2E-09 53.6 9.4 78 166-243 1-104 (106)
297 KOG4258|consensus 97.9 0.00013 2.7E-09 69.1 11.9 126 256-381 499-650 (1025)
298 cd05767 IgC_MHC_II_alpha Class 97.9 0.00014 3E-09 50.7 9.2 66 70-135 14-84 (94)
299 cd05766 IgC_MHC_II_beta Class 97.9 0.00019 4.1E-09 50.3 9.8 67 70-136 13-84 (94)
300 cd05759 Ig2_KIRREL3-like Secon 97.9 8.7E-05 1.9E-09 50.8 7.9 62 170-234 2-73 (82)
301 cd05889 Ig1_DNAM-1_like First 97.9 4.7E-05 1E-09 53.2 6.3 45 6-50 44-92 (96)
302 cd05711 Ig_FcalphaRI Immunoglo 97.9 0.00012 2.7E-09 51.3 8.3 70 152-227 2-75 (94)
303 cd05718 Ig1_PVR_like First imm 97.9 4.9E-05 1.1E-09 54.2 6.4 47 7-53 47-97 (98)
304 TIGR00864 PCC polycystin catio 97.9 0.076 1.6E-06 58.6 33.6 186 28-243 1397-1593(2740)
305 cd07696 IgC_CH3 CH3 domain (th 97.9 4.9E-05 1.1E-09 53.3 5.9 75 62-136 5-87 (96)
306 PF08205 C2-set_2: CD80-like C 97.9 9.7E-05 2.1E-09 51.5 7.5 66 71-136 14-85 (89)
307 cd07700 IgV_CD8_beta Immunoglo 97.8 5.9E-05 1.3E-09 54.6 6.4 66 67-132 2-92 (107)
308 KOG0613|consensus 97.8 0.00027 5.8E-09 70.4 12.6 162 67-238 240-424 (1205)
309 cd05878 Ig_Aggrecan_like Immun 97.8 0.0002 4.3E-09 52.0 9.1 78 166-243 1-108 (110)
310 cd07694 Ig2_CD4 Second immunog 97.8 0.00031 6.7E-09 47.0 9.0 76 163-241 10-85 (88)
311 cd04983 IgV_TCR_alpha_like Imm 97.8 0.00014 3.1E-09 53.0 8.3 65 163-230 9-93 (109)
312 cd05879 Ig_P0 Immunoglobulin ( 97.8 4.6E-05 9.9E-10 55.6 5.5 36 7-42 64-104 (116)
313 cd00096 Ig Immunoglobulin doma 97.8 7.6E-05 1.6E-09 49.3 6.3 61 74-135 1-66 (74)
314 cd05719 Ig2_PVR_like Second im 97.8 0.00017 3.7E-09 50.4 8.0 73 72-147 16-94 (95)
315 smart00407 IGc1 Immunoglobulin 97.8 0.00014 3E-09 48.6 7.3 62 74-135 2-71 (75)
316 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00017 3.8E-09 53.3 8.5 73 62-134 5-102 (119)
317 cd04981 IgV_H Immunoglobulin ( 97.8 0.00011 2.4E-09 54.1 7.3 72 62-133 3-97 (117)
318 cd00063 FN3 Fibronectin type 3 97.8 0.00063 1.4E-08 47.5 11.2 74 258-332 14-87 (93)
319 TIGR00864 PCC polycystin catio 97.8 0.099 2.2E-06 57.7 34.4 276 28-337 1481-1778(2740)
320 cd05846 Ig1_MRC-OX-2_like Firs 97.8 7.5E-05 1.6E-09 52.9 6.1 48 7-54 46-97 (97)
321 cd05901 Ig_Versican Immunoglob 97.8 8.4E-05 1.8E-09 53.6 6.2 48 6-54 61-114 (117)
322 cd05847 IgC_CH2_IgE CH2 domain 97.8 0.00012 2.7E-09 51.0 6.9 66 70-135 13-86 (94)
323 cd05902 Ig_Neurocan Immunoglob 97.8 5.3E-05 1.1E-09 54.5 5.1 48 6-54 54-107 (110)
324 cd05755 Ig2_ICAM-1_like Second 97.7 0.00022 4.8E-09 50.0 7.7 66 163-232 12-87 (100)
325 PF10179 DUF2369: Uncharacteri 97.7 0.022 4.8E-07 48.6 24.7 154 300-460 126-297 (300)
326 cd05899 IgV_TCR_beta Immunoglo 97.7 0.00025 5.5E-09 51.7 8.3 63 163-229 9-94 (110)
327 KOG4258|consensus 97.7 6.8E-05 1.5E-09 70.8 5.7 129 303-457 783-920 (1025)
328 PHA02633 hypothetical protein; 97.7 0.00014 3E-09 44.4 5.0 38 17-55 17-54 (63)
329 cd00099 IgV Immunoglobulin var 97.6 0.00025 5.3E-09 51.3 7.1 66 163-231 2-91 (105)
330 cd07703 Ig2_Nectin-2_like Seco 97.6 0.00046 1E-08 48.1 8.0 72 73-146 17-93 (95)
331 cd05880 Ig_EVA1 Immunoglobulin 97.6 0.00014 3.1E-09 53.3 5.4 46 7-52 63-114 (115)
332 cd07697 IgC_TCR_gamma T cell r 97.6 0.00034 7.5E-09 48.8 6.9 67 68-134 13-84 (96)
333 cd05768 IgC_CH4 CH4 domain (fo 97.6 0.00022 4.7E-09 50.8 5.8 67 69-135 14-91 (102)
334 cd05720 Ig_CD8_alpha Immunoglo 97.6 0.00025 5.4E-09 50.9 6.1 65 67-132 2-89 (104)
335 cd04980 IgV_L_kappa Immunoglob 97.5 0.00079 1.7E-08 48.7 8.1 64 163-229 11-93 (106)
336 cd05715 Ig_P0-like Immunoglobu 97.5 0.00027 5.8E-09 52.1 5.7 46 7-52 64-115 (116)
337 KOG4152|consensus 97.5 0.00057 1.2E-08 61.0 8.1 74 306-379 651-726 (830)
338 smart00406 IGv Immunoglobulin 97.5 0.00043 9.2E-09 47.2 6.0 59 73-131 1-81 (81)
339 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00027 5.8E-09 44.2 4.3 50 70-133 6-55 (65)
340 PF07654 C1-set: Immunoglobuli 97.4 0.0011 2.4E-08 45.3 7.8 64 71-137 8-79 (83)
341 cd05883 Ig2_Necl-2 Second immu 97.4 0.00076 1.7E-08 45.3 6.2 58 170-230 2-67 (82)
342 cd05769 IgC_TCR_beta T cell re 97.4 0.00074 1.6E-08 49.0 6.4 70 68-137 15-94 (115)
343 PHA02987 Ig domain OX-2-like p 97.4 0.0019 4E-08 50.2 8.8 79 163-243 26-123 (189)
344 cd04982 IgV_TCR_gamma Immunogl 97.3 0.00095 2.1E-08 49.2 7.1 63 163-228 9-98 (116)
345 cd07704 Ig2_Nectin-3-4_like Se 97.3 0.0016 3.4E-08 45.3 7.5 79 66-146 11-95 (97)
346 cd04985 IgC_CH1 CH1 domain (fi 97.3 0.0011 2.3E-08 46.5 6.3 64 70-135 15-87 (95)
347 cd04986 IgC_CH2 CH2 domain (se 97.3 0.00085 1.8E-08 46.9 5.7 72 63-136 11-90 (99)
348 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.0014 3.1E-08 41.3 5.8 48 72-133 7-54 (69)
349 PF07686 V-set: Immunoglobulin 97.2 0.00034 7.3E-09 51.5 3.7 48 6-53 62-114 (114)
350 cd04984 IgV_L_lambda Immunoglo 97.2 0.0022 4.8E-08 45.5 7.7 63 163-228 2-84 (98)
351 KOG1480|consensus 97.2 5.3E-05 1.2E-09 70.6 -1.7 125 20-147 87-217 (909)
352 PF08205 C2-set_2: CD80-like C 97.1 0.0018 4E-08 45.0 6.3 64 167-232 14-86 (89)
353 PF01108 Tissue_fac: Tissue fa 97.1 0.002 4.3E-08 46.5 6.3 81 343-450 22-106 (107)
354 cd05716 Ig_pIgR Immunoglobulin 97.0 0.0053 1.1E-07 43.6 8.1 65 163-229 3-86 (98)
355 cd07706 IgV_TCR_delta Immunogl 97.0 0.0048 1E-07 45.4 8.0 64 163-228 10-93 (116)
356 PHA02633 hypothetical protein; 97.0 0.0018 4E-08 39.7 4.5 36 110-145 16-51 (63)
357 cd05761 Ig2_Necl-1-4_like Seco 97.0 0.0046 9.9E-08 42.1 6.8 60 170-232 2-70 (82)
358 cd07689 Ig2_VCAM-1 Second immu 96.9 0.0039 8.4E-08 43.1 6.1 66 68-134 12-85 (99)
359 KOG0613|consensus 96.9 0.0048 1E-07 61.9 9.1 304 19-332 279-615 (1205)
360 PF11465 Receptor_2B4: Natural 96.9 0.0026 5.6E-08 44.1 4.9 47 8-54 60-107 (108)
361 smart00060 FN3 Fibronectin typ 96.9 0.02 4.3E-07 38.5 9.6 67 257-327 13-82 (83)
362 cd05884 Ig2_Necl-3 Second immu 96.7 0.0088 1.9E-07 40.7 6.7 60 170-232 2-71 (83)
363 cd05720 Ig_CD8_alpha Immunoglo 96.7 0.012 2.6E-07 42.2 7.6 63 163-228 2-90 (104)
364 cd07705 Ig2_Necl-1 Second immu 96.7 0.011 2.3E-07 40.3 6.9 59 170-231 2-70 (83)
365 cd07700 IgV_CD8_beta Immunoglo 96.6 0.012 2.5E-07 42.6 7.3 64 163-228 2-93 (107)
366 cd00098 IgC Immunoglobulin Con 96.6 0.0057 1.2E-07 43.1 5.5 63 165-231 11-86 (95)
367 cd00096 Ig Immunoglobulin doma 96.6 0.012 2.6E-07 38.3 6.9 58 170-230 1-66 (74)
368 smart00406 IGv Immunoglobulin 96.6 0.0013 2.7E-08 44.8 2.0 31 7-37 46-81 (81)
369 PF08204 V-set_CD47: CD47 immu 96.6 0.0027 5.9E-08 46.4 3.7 67 70-137 26-110 (130)
370 PF09294 Interfer-bind: Interf 96.5 0.011 2.4E-07 42.6 6.4 88 344-459 4-105 (106)
371 PF07354 Sp38: Zona-pellucida- 96.4 0.0043 9.3E-08 50.8 4.1 39 2-40 21-59 (271)
372 cd05721 IgV_CTLA-4 Immunoglobu 96.4 0.032 6.9E-07 40.0 7.8 68 64-131 6-93 (115)
373 cd05712 Ig_Siglec_N Immunoglob 96.4 0.0058 1.3E-07 45.2 4.3 34 7-40 64-102 (119)
374 cd05772 IgC_SIRP Signal-regula 96.3 0.039 8.5E-07 39.9 8.4 44 150-195 4-48 (111)
375 cd07692 Ig_CD3_epsilon Immunog 96.3 0.013 2.9E-07 36.8 5.0 52 165-229 5-56 (65)
376 PHA03270 envelope glycoprotein 96.3 0.78 1.7E-05 41.0 20.1 79 113-196 183-263 (466)
377 cd07704 Ig2_Nectin-3-4_like Se 96.2 0.054 1.2E-06 37.8 8.2 72 157-230 6-84 (97)
378 cd05719 Ig2_PVR_like Second im 96.0 0.07 1.5E-06 37.3 8.1 64 167-232 15-84 (95)
379 KOG4367|consensus 95.9 0.019 4.1E-07 50.2 5.8 83 255-340 449-531 (699)
380 cd04981 IgV_H Immunoglobulin ( 95.9 0.054 1.2E-06 39.8 7.5 65 163-228 8-97 (117)
381 KOG1480|consensus 95.9 0.0073 1.6E-07 57.1 3.4 58 1-58 166-223 (909)
382 PF11465 Receptor_2B4: Natural 95.8 0.031 6.7E-07 38.9 5.3 59 89-148 46-106 (108)
383 PHA02982 hypothetical protein; 95.8 0.029 6.3E-07 44.1 5.6 74 66-139 34-127 (251)
384 PF07354 Sp38: Zona-pellucida- 95.7 0.018 3.9E-07 47.3 4.7 47 87-134 13-59 (271)
385 cd07703 Ig2_Nectin-2_like Seco 95.6 0.098 2.1E-06 36.5 7.5 64 169-234 17-86 (95)
386 PF09067 EpoR_lig-bind: Erythr 95.5 0.17 3.6E-06 36.0 8.2 88 342-455 7-101 (104)
387 cd07689 Ig2_VCAM-1 Second immu 95.4 0.12 2.5E-06 36.0 6.9 63 163-229 11-85 (99)
388 cd07699 IgC_L Immunoglobulin C 95.2 0.074 1.6E-06 37.7 6.0 30 163-194 13-43 (100)
389 cd07691 Ig_CD3_gamma_delta Imm 95.2 0.11 2.4E-06 33.0 5.9 50 166-228 5-54 (69)
390 cd07698 IgC_MHC_I_alpha3 Class 95.1 0.083 1.8E-06 36.9 5.9 61 167-230 14-83 (93)
391 PF01108 Tissue_fac: Tissue fa 95.0 0.29 6.4E-06 35.2 8.7 78 245-324 21-101 (107)
392 PHA03269 envelope glycoprotein 94.8 3.1 6.7E-05 38.0 19.9 80 114-196 291-371 (566)
393 KOG4802|consensus 94.6 0.13 2.8E-06 45.2 6.7 92 343-452 145-238 (516)
394 KOG4806|consensus 94.6 0.78 1.7E-05 39.6 11.0 147 304-459 286-446 (454)
395 PHA02914 Immunoglobulin-like d 94.4 3.5 7.6E-05 36.6 21.4 40 19-60 82-121 (500)
396 cd07696 IgC_CH3 CH3 domain (th 94.2 0.33 7.1E-06 34.1 7.1 30 163-195 10-42 (96)
397 PHA03042 CD47-like protein; Pr 94.2 0.34 7.4E-06 40.2 8.0 61 71-137 31-95 (286)
398 smart00407 IGc1 Immunoglobulin 94.1 0.24 5.2E-06 32.9 6.0 58 170-229 2-70 (75)
399 PHA03273 envelope glycoprotein 94.0 4.7 0.0001 36.7 21.3 78 114-196 200-279 (486)
400 PHA03286 envelope glycoprotein 94.0 1.9 4.1E-05 38.8 12.5 76 18-93 127-225 (492)
401 PF07495 Y_Y_Y: Y_Y_Y domain; 93.8 0.25 5.3E-06 31.8 5.5 28 424-452 30-57 (66)
402 cd05768 IgC_CH4 CH4 domain (fo 93.8 0.2 4.4E-06 35.6 5.5 29 163-194 12-42 (102)
403 PHA02865 MHC-like TNF binding 93.8 0.34 7.4E-06 42.2 7.7 22 73-94 216-238 (338)
404 cd05769 IgC_TCR_beta T cell re 93.8 0.42 9E-06 34.8 7.1 30 163-194 14-44 (115)
405 PF10179 DUF2369: Uncharacteri 93.7 4.2 9.1E-05 35.2 13.9 129 300-447 13-152 (300)
406 COG4733 Phage-related protein, 93.5 1.7 3.6E-05 42.6 12.1 125 300-451 658-785 (952)
407 KOG4597|consensus 93.0 0.13 2.8E-06 46.1 4.0 83 64-147 204-292 (560)
408 cd05767 IgC_MHC_II_alpha Class 92.9 0.53 1.1E-05 32.9 6.2 27 165-194 13-41 (94)
409 cd05766 IgC_MHC_II_beta Class 92.7 1 2.2E-05 31.5 7.5 28 165-194 12-40 (94)
410 PHA02914 Immunoglobulin-like d 92.7 0.99 2.2E-05 39.8 8.7 117 64-191 272-416 (500)
411 KOG3632|consensus 92.6 1.2 2.5E-05 44.3 10.0 136 234-380 660-814 (1335)
412 cd05770 IgC_beta2m Class I maj 92.4 0.66 1.4E-05 32.3 6.2 62 164-229 12-82 (93)
413 cd04986 IgC_CH2 CH2 domain (se 92.2 0.6 1.3E-05 32.8 5.8 29 163-194 15-46 (99)
414 PHA03283 envelope glycoprotein 92.1 3.6 7.7E-05 38.1 11.7 37 18-55 134-170 (542)
415 PF08204 V-set_CD47: CD47 immu 92.0 0.19 4.2E-06 37.0 3.2 77 165-242 25-120 (130)
416 cd05847 IgC_CH2_IgE CH2 domain 92.0 1.2 2.6E-05 31.1 7.2 62 166-230 13-86 (94)
417 PF02124 Marek_A: Marek's dise 91.3 6.9 0.00015 31.8 12.9 96 87-194 7-115 (211)
418 COG3401 Fibronectin type 3 dom 91.2 4.1 8.9E-05 35.4 10.6 119 257-383 82-202 (343)
419 cd05721 IgV_CTLA-4 Immunoglobu 91.0 0.36 7.7E-06 34.8 3.6 31 8-38 59-94 (115)
420 KOG4152|consensus 90.5 0.23 5.1E-06 45.1 2.9 33 427-459 651-683 (830)
421 PF05790 C2-set: Immunoglobuli 90.3 3.7 7.9E-05 27.6 7.8 36 88-132 28-63 (80)
422 PHA02982 hypothetical protein; 90.0 3.2 6.9E-05 33.2 8.3 84 7-97 86-173 (251)
423 PRK14081 triple tyrosine motif 89.6 22 0.00047 34.9 36.2 369 22-449 247-654 (667)
424 PF06328 Lep_receptor_Ig: Ig-l 89.4 3 6.5E-05 28.7 7.1 63 163-226 14-81 (89)
425 PF09067 EpoR_lig-bind: Erythr 89.0 3.7 8.1E-05 29.2 7.5 80 245-327 7-95 (104)
426 cd07697 IgC_TCR_gamma T cell r 89.0 1.8 4E-05 30.3 5.9 30 163-194 12-42 (96)
427 PLN02533 probable purple acid 88.1 6.5 0.00014 36.7 10.5 93 342-460 40-134 (427)
428 PF06328 Lep_receptor_Ig: Ig-l 87.5 1.6 3.6E-05 30.0 4.8 68 61-131 8-81 (89)
429 cd04985 IgC_CH1 CH1 domain (fi 87.3 4.2 9.2E-05 28.4 6.9 26 166-194 15-42 (95)
430 PHA03042 CD47-like protein; Pr 87.3 2.2 4.9E-05 35.7 6.1 71 167-240 31-103 (286)
431 PF07654 C1-set: Immunoglobuli 86.9 1.9 4E-05 29.2 4.9 28 165-194 6-34 (83)
432 PHA03282 envelope glycoprotein 86.8 1.8 3.9E-05 39.2 5.7 45 9-54 116-161 (540)
433 COG3401 Fibronectin type 3 dom 85.8 24 0.00051 31.0 15.3 193 219-450 136-333 (343)
434 PF09294 Interfer-bind: Interf 85.8 1.8 3.9E-05 31.0 4.6 84 252-337 8-104 (106)
435 KOG4228|consensus 85.2 7.5 0.00016 39.8 9.7 48 221-268 1-48 (1087)
436 COG5475 Uncharacterized small 82.6 4.5 9.8E-05 24.3 4.3 34 8-43 7-41 (60)
437 PF05790 C2-set: Immunoglobuli 82.1 9.8 0.00021 25.5 6.5 20 19-38 44-63 (80)
438 PF02010 REJ: REJ domain; Int 82.1 1.8 3.9E-05 40.7 4.2 263 18-283 38-340 (440)
439 PF02480 Herpes_gE: Alphaherpe 82.0 1.1 2.4E-05 41.4 2.6 38 18-55 89-126 (439)
440 PHA03271 envelope glycoprotein 81.9 40 0.00087 30.6 22.4 77 113-194 208-287 (490)
441 KOG4597|consensus 81.1 3.8 8.3E-05 37.3 5.4 77 163-242 207-292 (560)
442 TIGR00868 hCaCC calcium-activa 80.7 73 0.0016 32.8 27.4 95 342-454 755-861 (863)
443 cd05890 Ig2_Nectin-1_like Seco 80.6 11 0.00024 26.0 6.2 59 74-134 23-86 (98)
444 PF09240 IL6Ra-bind: Interleuk 80.5 17 0.00038 25.5 9.6 84 346-452 2-90 (99)
445 PHA03052 Hypothetical protein; 75.2 16 0.00034 23.3 5.3 31 163-193 8-38 (69)
446 KOG3632|consensus 68.9 3.5 7.6E-05 41.2 2.2 97 313-445 643-740 (1335)
447 PF03921 ICAM_N: Intercellular 68.7 36 0.00078 23.6 11.3 82 59-153 6-90 (91)
448 PF01688 Herpes_gI: Alphaherpe 68.2 17 0.00038 28.2 5.4 44 8-52 112-157 (161)
449 PHA03281 envelope glycoprotein 66.8 68 0.0015 30.3 9.5 39 17-55 297-335 (642)
450 PHA03282 envelope glycoprotein 66.2 20 0.00043 32.9 6.0 41 109-149 121-161 (540)
451 PRK14081 triple tyrosine motif 66.2 1.4E+02 0.0031 29.6 26.0 274 25-322 344-646 (667)
452 PHA03283 envelope glycoprotein 64.4 80 0.0017 29.8 9.6 37 112-150 134-170 (542)
453 PHA03052 Hypothetical protein; 63.5 32 0.00069 22.0 4.9 36 63-98 4-41 (69)
454 PF06832 BiPBP_C: Penicillin-B 62.9 46 0.001 22.8 8.4 53 74-138 32-84 (89)
455 KOG0200|consensus 62.8 37 0.0008 33.6 8.0 108 16-133 11-138 (609)
456 PHA03112 IL-18 binding protein 61.7 35 0.00076 25.7 5.7 27 69-95 36-63 (141)
457 cd05890 Ig2_Nectin-1_like Seco 60.6 40 0.00086 23.5 5.4 59 169-229 22-86 (98)
458 COG4733 Phage-related protein, 58.7 27 0.00057 34.9 5.9 39 411-452 650-689 (952)
459 PF11049 KSHV_K1: Glycoprotein 58.0 46 0.00099 21.1 4.8 43 75-132 2-44 (71)
460 KOG1026|consensus 54.5 31 0.00067 34.5 5.7 157 67-242 203-363 (774)
461 PF09240 IL6Ra-bind: Interleuk 53.8 75 0.0016 22.3 8.8 69 258-328 12-87 (99)
462 PHA03281 envelope glycoprotein 51.2 2.2E+02 0.0047 27.3 10.0 40 110-150 296-335 (642)
463 PHA03189 UL14 tegument protein 50.6 1.1E+02 0.0023 26.6 7.5 20 63-82 59-78 (348)
464 PF11344 DUF3146: Protein of u 50.4 12 0.00025 24.4 1.5 15 429-443 66-80 (80)
465 PF03921 ICAM_N: Intercellular 48.9 88 0.0019 21.7 9.6 76 157-243 9-87 (91)
466 PHA03290 envelope glycoprotein 48.1 44 0.00095 29.3 5.0 35 19-54 130-164 (357)
467 PF08758 Cadherin_pro: Cadheri 46.5 96 0.0021 21.4 5.9 38 7-44 43-82 (90)
468 PHA02865 MHC-like TNF binding 46.0 58 0.0013 29.0 5.5 21 169-192 216-238 (338)
469 PHA03240 envelope glycoprotein 45.7 48 0.001 26.9 4.5 19 110-128 103-121 (258)
470 PF01688 Herpes_gI: Alphaherpe 45.7 61 0.0013 25.3 5.0 25 113-137 125-149 (161)
471 PF09423 PhoD: PhoD-like phosp 45.2 34 0.00074 32.4 4.5 36 421-459 62-97 (453)
472 PHA03286 envelope glycoprotein 44.6 2.6E+02 0.0056 26.1 9.2 36 112-148 127-162 (492)
473 PF11141 DUF2914: Protein of u 44.2 85 0.0018 20.1 7.6 56 87-146 7-65 (66)
474 PLN02533 probable purple acid 43.7 2.4E+02 0.0051 26.6 9.6 32 302-339 103-134 (427)
475 PF14686 fn3_3: Polysaccharide 42.6 49 0.0011 23.2 3.8 34 410-448 41-74 (95)
476 PF07353 Uroplakin_II: Uroplak 41.7 45 0.00097 25.6 3.6 25 422-446 101-125 (184)
477 PF02440 Adeno_E3_CR1: Adenovi 41.6 78 0.0017 20.1 4.2 20 164-190 2-21 (63)
478 PHA03289 envelope glycoprotein 41.3 66 0.0014 28.1 5.0 34 19-53 123-156 (352)
479 PF02480 Herpes_gE: Alphaherpe 40.2 20 0.00044 33.4 2.1 32 9-40 259-291 (439)
480 PHA02935 Hypothetical protein; 39.9 45 0.00097 26.5 3.6 88 88-177 68-165 (349)
481 PF10342 GPI-anchored: Ser-Thr 39.6 1.2E+02 0.0026 20.7 8.8 63 355-442 12-78 (93)
482 PF11141 DUF2914: Protein of u 39.4 78 0.0017 20.3 4.1 49 279-327 8-56 (66)
483 PHA03189 UL14 tegument protein 39.4 70 0.0015 27.7 4.8 35 10-44 121-159 (348)
484 PHA03292 envelope glycoprotein 39.2 1E+02 0.0023 27.7 5.9 25 19-43 129-153 (413)
485 PHA02579 7 baseplate wedge sub 37.1 2.2E+02 0.0048 28.6 8.1 89 345-456 7-96 (1030)
486 TIGR03000 plancto_dom_1 Planct 36.9 55 0.0012 21.6 3.1 24 420-443 26-49 (75)
487 PF13754 Big_3_4: Bacterial Ig 36.6 99 0.0022 18.7 5.5 28 424-452 15-42 (54)
488 PHA02935 Hypothetical protein; 36.3 79 0.0017 25.2 4.4 63 19-82 103-166 (349)
489 PF10430 Ig_Tie2_1: Tie-2 Ig-l 35.0 1.5E+02 0.0032 20.3 6.4 60 73-132 17-83 (96)
490 PHA03291 envelope glycoprotein 34.5 95 0.0021 27.5 5.0 35 19-54 130-164 (401)
491 KOG4228|consensus 31.8 80 0.0017 33.0 4.7 106 317-459 2-109 (1087)
492 KOG3611|consensus 31.5 1E+02 0.0022 31.2 5.4 60 73-134 571-634 (737)
493 KOG1948|consensus 30.9 2.1E+02 0.0045 29.3 7.1 82 372-458 900-983 (1165)
494 KOG1026|consensus 30.8 2.1E+02 0.0046 29.0 7.3 72 163-243 203-274 (774)
495 PF02010 REJ: REJ domain; Int 29.9 17 0.00038 34.1 0.0 156 18-176 148-326 (440)
496 PF04775 Bile_Hydr_Trans: Acyl 28.9 80 0.0017 23.5 3.3 25 423-447 5-29 (126)
497 PF00801 PKD: PKD domain; Int 28.8 80 0.0017 20.2 3.0 29 66-95 6-34 (69)
498 PF10333 Pga1: GPI-Mannosyltra 27.9 83 0.0018 25.2 3.4 21 421-441 64-84 (180)
499 PF12988 DUF3872: Domain of un 27.6 1E+02 0.0022 23.1 3.5 44 150-194 31-76 (137)
500 PF09926 DUF2158: Uncharacteri 25.7 1.7E+02 0.0036 17.9 4.2 35 9-43 4-42 (53)
No 1
>KOG4221|consensus
Probab=100.00 E-value=2.3e-53 Score=395.10 Aligned_cols=423 Identities=28% Similarity=0.474 Sum_probs=338.8
Q ss_pred CCcccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC------eeEEcceeeeecceeeE
Q psy535 1 MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA------KVTFTPTVQYLPFRLQG 74 (460)
Q Consensus 1 ~~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~ 74 (460)
||++..+.++|+.+..+|.|.|.++++.|.|.|+|.|+++.....+..+.|+|...+ .|...|....+.+|+++
T Consensus 176 kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v 255 (1381)
T KOG4221|consen 176 KNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDV 255 (1381)
T ss_pred cccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcE
Confidence 355556777799999999999999999999999999999987777888999987322 35667888899999999
Q ss_pred EEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCce
Q psy535 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF 154 (460)
Q Consensus 75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~ 154 (460)
.|.|.+.+.|.+ +|.|.+||..+.... .++.....+.|.|.+++..|+|.|+|+|.|......++ .+|.|..+|.+
T Consensus 256 ~leCvvs~~p~p-~v~Wlrng~~i~~ds-~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idas--aev~V~a~P~~ 331 (1381)
T KOG4221|consen 256 VLECVVSGVPKP-SVKWLRNGEKISVDS-YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDAS--AEVTVLAPPGF 331 (1381)
T ss_pred EEEEEecCCCCC-ceEEeeCCeeeeecc-eEEEEecccceEEeccccccCceEEEEecCCCcccccc--eEEEEEcCCCC
Confidence 999999999887 799999999987533 56666667889999999999999999999955554444 45556668999
Q ss_pred eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecc-eEEEccccceeceEEEEEEeccccee
Q psy535 155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG-NITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 155 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
...|... .+..+.++.+.|.+ .|.|.|.+.|++++....+...+++..+ .+.|..+-..|.|.|.|.+.|..|..
T Consensus 332 ~~~p~~l-~A~e~~die~ec~~---~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a 407 (1381)
T KOG4221|consen 332 TKAPTTL-VAHESMDIEFECPV---SGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSA 407 (1381)
T ss_pred CCCCcce-eeeeccceeEeCCC---CCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccc
Confidence 9999887 56679999999999 7889999999998877777666666433 37777777888888888888877765
Q ss_pred eeeeEEEEecC---------------------------------------------------------------------
Q psy535 234 VQAAQLVVEGT--------------------------------------------------------------------- 244 (460)
Q Consensus 234 ~~~~~l~v~~~--------------------------------------------------------------------- 244 (460)
.....+.+...
T Consensus 408 ~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv 487 (1381)
T KOG4221|consen 408 QAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTV 487 (1381)
T ss_pred cchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEe
Confidence 55444422110
Q ss_pred --------------------------------CCCCCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe
Q psy535 245 --------------------------------QPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW 291 (460)
Q Consensus 245 --------------------------------~p~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (460)
+|.+|..+. .......+.+.|.+|..++.++ ..|.+.|...+.+.|
T Consensus 488 ~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I-~~yk~~ys~~~~~~~ 566 (1381)
T KOG4221|consen 488 QNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPI-TGYKLFYSEDDTGKE 566 (1381)
T ss_pred eecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCc-eEEEEEEEcCCCCce
Confidence 121222121 1234567899999988777776 799999988866777
Q ss_pred eeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCCC-
Q psy535 292 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLER- 368 (460)
Q Consensus 292 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~~- 368 (460)
..+.. +...++|.+|.+.+.|.|+|+|.|..|.|..|..+.+.+..+.|+ ||.|+++...+ ++|.|+|.+|...
T Consensus 567 ~~~~~---n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t 643 (1381)
T KOG4221|consen 567 LRVEN---NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSET 643 (1381)
T ss_pred EEEec---CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCccc
Confidence 76654 678999999999999999999999999999999999999999996 66669998776 6999999998654
Q ss_pred -CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCC
Q psy535 369 -ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447 (460)
Q Consensus 369 -~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G 447 (460)
++.+.+|+|+|+.... .....|..+. .+.+.|.+.+|+|++.|.|||.|.|..|
T Consensus 644 ~ng~itgYkIRy~~~~~----------------------~~~~~~t~v~---~n~~~~l~~~Lep~T~Y~vrIsa~t~nG 698 (1381)
T KOG4221|consen 644 QNGQITGYKIRYRKLSR----------------------EDEVNETVVK---GNTTQYLFNGLEPNTQYRVRISAMTVNG 698 (1381)
T ss_pred ccceEEEEEEEecccCc----------------------ccccceeecc---cchhhhHhhcCCCCceEEEEEEEeccCC
Confidence 7789999999996543 1222333332 3677888999999999999999999999
Q ss_pred CCCCCceeEeecC
Q psy535 448 DGMLSNIVVVKTK 460 (460)
Q Consensus 448 ~s~~s~~~~~~T~ 460 (460)
.|++|+|+.+.|.
T Consensus 699 tGpaS~w~~aeT~ 711 (1381)
T KOG4221|consen 699 TGPASEWVSAETP 711 (1381)
T ss_pred CCCcccceeccCc
Confidence 9999999999884
No 2
>KOG3513|consensus
Probab=100.00 E-value=1e-52 Score=392.83 Aligned_cols=413 Identities=26% Similarity=0.439 Sum_probs=329.1
Q ss_pred cccceEEEeeCC-eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC
Q psy535 7 SLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT 85 (460)
Q Consensus 7 ~~~~r~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 85 (460)
+..+|.+....| .|.|.+++.+|+|.|+|.|.|..|.. .....|.|..+|.+...+.+..+..|+++.|.|.+.|.|.
T Consensus 282 ~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~ 360 (1051)
T KOG3513|consen 282 PPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPN 360 (1051)
T ss_pred CCCcceeeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCC
Confidence 555666665544 99999999999999999999999964 8899999999999999999999999999999999999988
Q ss_pred CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcc-ccc
Q psy535 86 FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAM-YQR 164 (460)
Q Consensus 86 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~-~~~ 164 (460)
+ .|+|++||.++.+..........++.|.|.+++..|+|.|+|.|.|..|...+++.|.|.. .+|.+...+... +.+
T Consensus 361 p-~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a-~~P~f~~~p~~~~~~a 438 (1051)
T KOG3513|consen 361 P-TVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA-SAPVFPLNPVERKVMA 438 (1051)
T ss_pred C-ceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc-cCCCCCCCccceEEEE
Confidence 7 7999999999986544444556788999999999999999999999999988888877753 346666666543 457
Q ss_pred CCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
..|..+.|.|.. .+.|.|.+.|.+.++.++...|+.+ .+++|.|.+++.+|+|.|+|.|.|.+|.......|.|..
T Consensus 439 ~~g~~v~i~C~~---~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd 515 (1051)
T KOG3513|consen 439 VVGGTVTIDCKP---FASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD 515 (1051)
T ss_pred EeCCeEEEeecc---CCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEec
Confidence 789999999999 8999999999997776777888887 688999999999999999999999999999999999876
Q ss_pred CCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-----eeeeccCCCCceEEEccCccCccEE
Q psy535 244 TQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-----LPIPVTPPGSTQITINRLTPATTYE 316 (460)
Q Consensus 244 ~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~l~~~~~~~ 316 (460)
.+- .+|.+. ....+..++|.|....+...... +.|++++..-.. ........+...|+|.++...+.|.
T Consensus 516 ~tri~~~P~~~-~v~~g~~v~l~Ce~shD~~ld~~---f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~ 591 (1051)
T KOG3513|consen 516 ATRITLAPSNT-DVKVGESVTLTCEASHDPSLDIT---FTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGK 591 (1051)
T ss_pred CceEEeccchh-hhccCceEEEEeecccCCCcceE---EEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCce
Confidence 321 122222 23456789999987665555443 477776542111 1111111122569999999999999
Q ss_pred EEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEc--CCeeeeccccC
Q psy535 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTD--GSWKTLNKGQI 393 (460)
Q Consensus 317 ~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~--~~~~~~~~~~~ 393 (460)
|.|.|...+........+.++ ++|+||.++.+...+ +++.|+|.+..+++++|..|.|+++.. +.|.....
T Consensus 592 Y~C~aqT~~Ds~s~~A~l~V~---gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~--- 665 (1051)
T KOG3513|consen 592 YTCVAQTALDSASARADLLVR---GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTT--- 665 (1051)
T ss_pred EEEEEEEeecchhcccceEEe---cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeE---
Confidence 999999876655555556665 458899999999887 599999999999999999999999974 44654432
Q ss_pred CCCcccccccceecCceeeeeeccCCCCc---ceEEECCCCcCceEEEEEEEeecCCCCCCCceeE-eec
Q psy535 394 RPEENSYLGEYREQGNKDWLPIPVTPPGS---TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKT 459 (460)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~-~~T 459 (460)
++... .+.++.+|.|.+.|+|||.|+|..|.|+||.+.. ++|
T Consensus 666 ------------------------vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT 711 (1051)
T KOG3513|consen 666 ------------------------VPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRT 711 (1051)
T ss_pred ------------------------CCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceec
Confidence 22222 3577889999999999999999999999988754 444
No 3
>KOG3513|consensus
Probab=100.00 E-value=3.7e-50 Score=375.74 Aligned_cols=422 Identities=28% Similarity=0.466 Sum_probs=340.8
Q ss_pred CcccCcccce---EEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC-CeeEEcceee--eecceeeEE
Q psy535 2 NTKVGSLETR---VVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-AKVTFTPTVQ--YLPFRLQGV 75 (460)
Q Consensus 2 ~~~~~~~~~r---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~ 75 (460)
|++.....+| +++ .+|.|+|++++.+|+|.|+|.|+|..|.. .+.+.|.|... |.|...|... .+..|.++.
T Consensus 368 Ng~pl~~~~r~~~~~i-~~g~L~is~v~~~dsg~YQC~A~Nk~G~i-~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~ 445 (1051)
T KOG3513|consen 368 NGEPLEPAERDPRYKI-DDGTLIISNVQESDSGVYQCIAENKYGTI-YANAELKVLASAPVFPLNPVERKVMAVVGGTVT 445 (1051)
T ss_pred CCeecCccCCCcceEE-eCCEEEEEecccccCeEEEeeeecccceE-eeeeEEEEEccCCCCCCCccceEEEEEeCCeEE
Confidence 4444444555 888 67799999999999999999999999997 78899999864 8887777555 566789999
Q ss_pred EEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCcee
Q psy535 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT 155 (460)
Q Consensus 76 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~ 155 (460)
|.|...+.|.+ .++|.|++..+. +..++.+.++|+|.|.+++.+|+|.|+|.|.|..|... ....|.|..++.+.
T Consensus 446 i~C~~~asP~p-~~~W~k~~~~~~--~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~--~~~~L~Vkd~tri~ 520 (1051)
T KOG3513|consen 446 IDCKPFASPKP-KVSWLKGGEKLL--QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAE--STGNLIVKDATRIT 520 (1051)
T ss_pred EeeccCCCCcc-eEEEEcCCcccc--cCceEEECCCCcEEecccCcccCcEEEEEEEcccCccc--eEEEEEEecCceEE
Confidence 99999999987 799999998433 67899999999999999999999999999999999864 45667778899999
Q ss_pred eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC----CcccEEEecc----eEEEccccceeceEEEEEEe
Q psy535 156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----PKNRVKIVGG----NITIEGLRRVDFGYYECVVS 227 (460)
Q Consensus 156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~----~~~~~~~~~~----~l~i~~~~~~~~g~y~C~a~ 227 (460)
..|... .+..|+.++|.|.+.++ ......+.|.+ ++..+ .......... .|.|.+++..|+|.|.|++.
T Consensus 521 ~~P~~~-~v~~g~~v~l~Ce~shD-~~ld~~f~W~~-nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aq 597 (1051)
T KOG3513|consen 521 LAPSNT-DVKVGESVTLTCEASHD-PSLDITFTWKK-NGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQ 597 (1051)
T ss_pred eccchh-hhccCceEEEEeecccC-CCcceEEEEEE-CCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEE
Confidence 988776 78999999999998543 33456889999 44433 2333444333 49999999999999999999
Q ss_pred cccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCC---ce
Q psy535 228 NEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS---TQ 303 (460)
Q Consensus 228 n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 303 (460)
....+.++...+.|.. +|.||..+.. ......+.|+|.++.+...+ +..|.+.++......|..+....... .+
T Consensus 598 T~~Ds~s~~A~l~V~g-pPgpP~~v~~~~i~~t~~~lsW~~g~dn~Sp-I~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~s 675 (1051)
T KOG3513|consen 598 TALDSASARADLLVRG-PPGPPPDVHVDDISDTTARLSWSPGSDNNSP-IEKYTIQFRTPFPGKWKAVTTVPGNITGDES 675 (1051)
T ss_pred EeecchhcccceEEec-CCCCCCceeEeeeccceEEEEeecCCCCCCC-ceEEeEEecCCCCCcceEeeECCCcccCccc
Confidence 8777777778888886 6777776654 56778999999999888776 68999999999888998876333222 35
Q ss_pred EEEccCccCccEEEEEEEEcCCCCCCCCCcEE-EEccCCCC-CCCcceEEEeec-ceEEEEecCCC--CCCccceEEEEE
Q psy535 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIK 378 (460)
Q Consensus 304 ~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~-~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~--~~~~~i~~y~i~ 378 (460)
..+-+|.|...|+||+.|.|..|.|.+|.+.. ++|.+.+| ..|.++..-..+ +.+.|+|++.. ..+++-.+|+|.
T Consensus 676 a~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vs 755 (1051)
T KOG3513|consen 676 ATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVS 755 (1051)
T ss_pred eeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEE
Confidence 77889999999999999999999999988754 67888888 489999988776 68999999865 347899999999
Q ss_pred EEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEEC--CCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535 379 YRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITIN--RLTPATTYEFQVVGKNELGDGMLSNIVV 456 (460)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~~~Y~~~v~a~n~~G~s~~s~~~~ 456 (460)
|+..+. ...|....+....+..+.+. ...|++.|+++|.|+|..|+|+.|..+.
T Consensus 756 wr~~g~------------------------~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v 811 (1051)
T KOG3513|consen 756 WRPQGA------------------------DKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTV 811 (1051)
T ss_pred EEeCCC------------------------CcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEE
Confidence 998764 11455544444444555544 5667999999999999999999999877
Q ss_pred eec
Q psy535 457 VKT 459 (460)
Q Consensus 457 ~~T 459 (460)
+.+
T Consensus 812 ~~S 814 (1051)
T KOG3513|consen 812 GYS 814 (1051)
T ss_pred EEc
Confidence 643
No 4
>KOG4221|consensus
Probab=100.00 E-value=2.2e-43 Score=328.87 Aligned_cols=409 Identities=25% Similarity=0.450 Sum_probs=313.8
Q ss_pred cccceEEEeeCCeEEEeecCC-----CCCeeEEEEEEeC-CCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535 7 SLETRVVIKKDGTLVINPVGS-----DDSGLYMCEVSNG-IGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~~~~~-----~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
..++|.++++||+|.|.++.. -|+|.|+|.|+-. .|...+..+.|.+...+.|...+....+..|+++.|.|.+
T Consensus 85 ~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~v 164 (1381)
T KOG4221|consen 85 VYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEV 164 (1381)
T ss_pred hhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEE
Confidence 456889999999999999998 8899999999977 5666788899999889999999999999999999999999
Q ss_pred ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC------ce
Q psy535 81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP------AF 154 (460)
Q Consensus 81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p------~~ 154 (460)
.+.+-+ .+.|.++..++.- ..++.+..+|.|.|.+++..|.|.|+|.|+++.... .+...++.|..-| .|
T Consensus 165 n~e~~p-~i~w~kn~~pl~~--~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r-~S~~a~ltv~s~~~~~~~~~f 240 (1381)
T KOG4221|consen 165 NAEPVP-TIMWLKNDQPLPL--DSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQR-TSNEAELTVLSDPGALNKLVF 240 (1381)
T ss_pred cCccCc-eeEEecccccccC--CCcEEEcCCCcEEecccccCCCceEEEEEecCCcCC-ccceeEEEecCCcccccceee
Confidence 996555 7999999998763 348899999999999999999999999999865443 3445555554222 24
Q ss_pred eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc--cEEEe-cceEEEccccceeceEEEEEEecccc
Q psy535 155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIV-GGNITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 155 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
...|... .+..|+.+.|.|.+ .+.|.|.+.|.+ ++..+... ++... .+.|.|.+++..|+|.|+|+|.|...
T Consensus 241 l~~p~~~-~v~~g~~v~leCvv---s~~p~p~v~Wlr-ng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D 315 (1381)
T KOG4221|consen 241 LDEPSNA-VVVEGDDVVLECVV---SGVPKPSVKWLR-NGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTND 315 (1381)
T ss_pred ecCCCcc-ccccCCcEEEEEEe---cCCCCCceEEee-CCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCc
Confidence 4455555 68899999999999 899999999999 55555433 44444 56899999999999999999999554
Q ss_pred eeeeeeEEEEecCCC--CCCCce---------------------------------------------------------
Q psy535 232 TIVQAAQLVVEGTQP--HAPYNI--------------------------------------------------------- 252 (460)
Q Consensus 232 ~~~~~~~l~v~~~~p--~~p~~~--------------------------------------------------------- 252 (460)
...+..++.|..+|- ..|..+
T Consensus 316 ~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~ 395 (1381)
T KOG4221|consen 316 SIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGF 395 (1381)
T ss_pred ccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchh
Confidence 445555555543210 000000
Q ss_pred ----------------------------------------eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCee
Q psy535 253 ----------------------------------------TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL 292 (460)
Q Consensus 253 ----------------------------------------~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (460)
........+.++|.++...+.+. ..|.+.|+........
T Consensus 396 yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i-~~~~v~~~~~~~~rer 474 (1381)
T KOG4221|consen 396 YQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNI-STYTVFYKVEGDVRER 474 (1381)
T ss_pred hhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCc-ceEEEEEecCCchhhh
Confidence 00011235678888766444443 4566656554433222
Q ss_pred eeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCcc
Q psy535 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASL 371 (460)
Q Consensus 293 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~ 371 (460)
.......+ ....+.+|.+.+.|.|+|.|.|..|.+..+..+.+.+... +|..+.....+ .++.+.|++|.-++++
T Consensus 475 ~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE---gp~~~~a~ats~~ti~v~WepP~~~n~~ 550 (1381)
T KOG4221|consen 475 LQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE---GPVQLQAYATSPTTILVTWEPPPFGNGP 550 (1381)
T ss_pred heeccCCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC---CCccccccccCcceEEEEecCCCCCCCC
Confidence 23333334 7889999999999999999999999999999999987644 33336666666 5999999999988999
Q ss_pred ceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCC
Q psy535 372 IQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449 (460)
Q Consensus 372 i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s 449 (460)
|++|++.|..++. |..+. .+..+++|.||.+++.|.|+|.|+|+.|.|
T Consensus 551 I~~yk~~ys~~~~~~~~~~~------------------------------~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g 600 (1381)
T KOG4221|consen 551 ITGYKLFYSEDDTGKELRVE------------------------------NNATEYTINGLEKYTEYSIRVVAYNSAGSG 600 (1381)
T ss_pred ceEEEEEEEcCCCCceEEEe------------------------------cCccEEEeecCCCccceEEEEEEecCCCCC
Confidence 9999999997632 22222 477899999999999999999999999999
Q ss_pred CCCceeEeec
Q psy535 450 MLSNIVVVKT 459 (460)
Q Consensus 450 ~~s~~~~~~T 459 (460)
..|..+.|+|
T Consensus 601 ~sS~~i~V~T 610 (1381)
T KOG4221|consen 601 VSSADITVRT 610 (1381)
T ss_pred CCCCceEEEe
Confidence 9999999987
No 5
>KOG4222|consensus
Probab=100.00 E-value=8.7e-38 Score=290.11 Aligned_cols=403 Identities=24% Similarity=0.402 Sum_probs=304.5
Q ss_pred ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCC
Q psy535 8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQ 87 (460)
Q Consensus 8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~ 87 (460)
+..++.+..+|.|.|.+++.+|+|.|.|++.|-.|...+...+|.|+.+|.|...|....+..|..+.+.|.+.|.|.+
T Consensus 177 ~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P- 255 (1281)
T KOG4222|consen 177 DVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQP- 255 (1281)
T ss_pred cceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCC-
Confidence 5677777789999999999999999999999999998888999999999999999999999999999999999998876
Q ss_pred eEEEeeCCeecCccccccEEEeec-CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCC
Q psy535 88 YVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV 166 (460)
Q Consensus 88 ~v~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~ 166 (460)
.+.|.+++..+. ..+..+..+ .+|.|.+++..|.|.|.|.+.|..|..+.++.++| +.+|.+...+... .+..
T Consensus 256 ~Vrwkk~~~~~P---~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV--~apP~f~kkp~dq-~v~l 329 (1281)
T KOG4222|consen 256 TVRWKKDDPSLP---RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTV--QAPPSFGKKPRDQ-KVAL 329 (1281)
T ss_pred ceeeeccCCCCC---ccceeeeeccccccccccCCCcccceeeeccccccccccccceEE--ecCcccccccCcc-cccc
Confidence 799999777664 345555555 78999999999999999999999999888877666 5599999888876 6888
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--------cccEEE-ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALP--------KNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--------~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
|..++|.|.. .+.|.|.+.|.+.+...+- ..+..+ ..+.|.|.++...|.|.|.|...+..|......
T Consensus 330 g~~vt~pc~~---~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a 406 (1281)
T KOG4222|consen 330 GGTVTFPCET---LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKA 406 (1281)
T ss_pred CceEEeeeec---CCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccce
Confidence 9999999999 8999999999997654431 122222 234799999999999999999888777654433
Q ss_pred EEEEecC-CC-CCCCceeee------eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccC
Q psy535 238 QLVVEGT-QP-HAPYNITGV------ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRL 309 (460)
Q Consensus 238 ~l~v~~~-~p-~~p~~~~~~------~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 309 (460)
.+.+... .- .||..+... .......+-|. ..+.+.+. +.|.+++-................+.+.++
T Consensus 407 ~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~--atg~P~p~---i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl 481 (1281)
T KOG4222|consen 407 YLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCS--ATGAPTPN---ISWLKDGCNVMNPDSRISQQEIGSLRIRDL 481 (1281)
T ss_pred eEEEEeeeccCCCCceeeecccccccccCcccccChh--hhCCCCCC---chhhhcccccccCCcccceeeeceeeeeee
Confidence 3322111 11 222222211 11223444444 34444433 555555433211112222324467899999
Q ss_pred ccCccEEEEEEEEcCCCCCCCCCcEEEEccCC------------CCCCCcceEEEeec-ceEEEEecCCCC-CCccceEE
Q psy535 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGP------------KPGPPRNVSVTEVN-NGFVISWQPPLE-RASLIQYY 375 (460)
Q Consensus 310 ~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~------------~P~~p~~~~~~~~~-~~v~l~W~~~~~-~~~~i~~y 375 (460)
.-.+.|.|.|.|.+..|++.++..+.+..... .|++|....+..++ ++++|+|.+... +..++.+|
T Consensus 482 ~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~y 561 (1281)
T KOG4222|consen 482 KGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGY 561 (1281)
T ss_pred ecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchh
Confidence 99999999999999999999998887654422 35667777777777 599999999876 45699999
Q ss_pred EEEEEEcC---CeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535 376 LIKYRTDG---SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452 (460)
Q Consensus 376 ~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s 452 (460)
.|+|.... .|..... . ...+.+.|.+|.|+..|.|.|+|.|..|-|.+|
T Consensus 562 iieafs~~~~etw~~ta~---------------------------~-v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps 613 (1281)
T KOG4222|consen 562 IIEAFSPDLGETWQTTAG---------------------------R-VKTTTYAIRGLKPNLSYLFLVRAENEQGISDPS 613 (1281)
T ss_pred HHHHhhhhhccccccccc---------------------------c-cccceeeecCcCccceeeeeeeccccccccCCc
Confidence 99987532 2433321 1 356788999999999999999999999988776
Q ss_pred c
Q psy535 453 N 453 (460)
Q Consensus 453 ~ 453 (460)
.
T Consensus 614 ~ 614 (1281)
T KOG4222|consen 614 T 614 (1281)
T ss_pred c
Confidence 4
No 6
>KOG4222|consensus
Probab=100.00 E-value=3.5e-32 Score=253.16 Aligned_cols=426 Identities=27% Similarity=0.398 Sum_probs=313.1
Q ss_pred ccCcccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535 4 KVGSLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 4 ~~~~~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
.-...-.|+++..+ -+|.|..++..|.|.|.|.+.|..|.. .+...|+|+.+|.|..+|....+..|..++|.|.+.+
T Consensus 263 ~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l-~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~g 341 (1281)
T KOG4222|consen 263 DPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGL-EASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLG 341 (1281)
T ss_pred CCCCCccceeeeeccccccccccCCCcccceeeecccccccc-ccccceEEecCcccccccCccccccCceEEeeeecCC
Confidence 34456688999888 799999999999999999999999986 8889999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeCCeecC------ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE---ee-C-C
Q psy535 83 NPTFQYVTWTKDKRLLE------PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL---VR-K-P 151 (460)
Q Consensus 83 ~~~~~~v~W~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~---v~-~-~ 151 (460)
+|++ .+.|.+.|...- +..+.+..+...+.|.|.+++..|.|.|.|...+..+.....+.+.+. .. . +
T Consensus 342 nP~P-avfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPp 420 (1281)
T KOG4222|consen 342 NPPP-AVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPP 420 (1281)
T ss_pred CCCc-ceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCC
Confidence 9887 699999775421 123455566667789999999999999999988777766555444432 11 3 3
Q ss_pred CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC-CcccEE-EecceEEEccccceeceEEEEEEecc
Q psy535 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVK-IVGGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-~~~~~~-~~~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
|.+...+... ....+..+.|.|.+ .+.|.+.+.|.+++.... ...+.. ...+.+.+..+...|.|.|+|.+.+.
T Consensus 421 p~i~~g~~nQ-tl~v~s~a~l~c~a---tg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~ 496 (1281)
T KOG4222|consen 421 PIIEQGPANQ-TLPVGSTASLPCSA---TGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDE 496 (1281)
T ss_pred ceeeeccccc-ccccCcccccChhh---hCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCc
Confidence 4455556554 67779999999999 899999999999554322 122222 23578999999999999999999999
Q ss_pred cceeeeeeEEEEecC--------------CCCCCCce-eeeeecceEEEEeecCCCCCCCceeeEEEEEEecC-CCCeee
Q psy535 230 VATIVQAAQLVVEGT--------------QPHAPYNI-TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG-NKDWLP 293 (460)
Q Consensus 230 ~g~~~~~~~l~v~~~--------------~p~~p~~~-~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 293 (460)
.|+...+..+.|... .|.+|... .......+++|.|.+....+.-++.+|++.+.... ...|..
T Consensus 497 ~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ 576 (1281)
T KOG4222|consen 497 SGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQT 576 (1281)
T ss_pred ccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccc
Confidence 999888877777431 12222211 13445679999999887766666678888765433 345665
Q ss_pred eeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE-EEccCCCCCC-------------CcceEEEe---ec-
Q psy535 294 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTKGPKPGP-------------PRNVSVTE---VN- 355 (460)
Q Consensus 294 ~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~-~~~~~~~P~~-------------p~~~~~~~---~~- 355 (460)
..... ..+.+.|.+|.+...|.|.|+|.|..|-+.++..-. +++.+..+.. -..++... ..
T Consensus 577 ta~~v-~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~a 655 (1281)
T KOG4222|consen 577 TAGRV-KTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNA 655 (1281)
T ss_pred ccccc-ccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccch
Confidence 54322 667899999999999999999999999776554322 2222111110 01122221 12
Q ss_pred ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCc
Q psy535 356 NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPAT 434 (460)
Q Consensus 356 ~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~ 434 (460)
++|.+.|...... ...|.+|+|.||..+. ....|..+.........+.+.+|.|++
T Consensus 656 sslr~~w~~~kq~~~~~i~g~~I~~r~~~~-----------------------~~a~~s~~~v~~~t~~s~v~~nl~p~t 712 (1281)
T KOG4222|consen 656 SSLRLGWTKDKQHGSQYIQGYRISYRSLGS-----------------------QLAQWSNAGVTVPTPESVVVPNLKPGT 712 (1281)
T ss_pred hheeeeeeeecccCcccccceEEEeccCcc-----------------------ccccccccceeccCCcceeccccCCCc
Confidence 4799999998765 4489999999998764 122344455555677889999999999
Q ss_pred eEEEEEEEeecCCC---CCCCceeEeec
Q psy535 435 TYEFQVVGKNELGD---GMLSNIVVVKT 459 (460)
Q Consensus 435 ~Y~~~v~a~n~~G~---s~~s~~~~~~T 459 (460)
.|+|.++.+-..|. |-+|..+.+.|
T Consensus 713 ~ye~f~~Pf~~~~~s~~g~pS~sk~alt 740 (1281)
T KOG4222|consen 713 NYEFFVRPFFPHGYSIQGAPSNSKTALT 740 (1281)
T ss_pred cceeeccCccCCCcceecCCcccccccc
Confidence 99999999988653 55666555443
No 7
>KOG4194|consensus
Probab=99.96 E-value=1.5e-27 Score=208.77 Aligned_cols=218 Identities=27% Similarity=0.419 Sum_probs=178.5
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 97 (460)
+.|.+.+|+..|+|.|+|+++|.+|+.+++.+.|+|...|.|...|.+.++..|+.+.|.|.+.|.|.| .|.|.|+|..
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~P-eIawqkdggt 652 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRP-EIAWQKDGGT 652 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCc-ceeehhcCCC
Confidence 379999999999999999999999999999999999999999999999999999999999999999887 7999998876
Q ss_pred -cCccccccEEEee-cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEee
Q psy535 98 -LEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE 175 (460)
Q Consensus 98 -~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~ 175 (460)
.......|..+.. +..+.|.|++.+|+|.|+|.|.|..|...+++.++| .+.|.+.+.-... .+..|+++.|.|.
T Consensus 653 dFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V--~e~p~f~~PL~~~-~V~~get~vlqC~ 729 (873)
T KOG4194|consen 653 DFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTV--LETPSFSIPLEDQ-LVVVGETLVLQCL 729 (873)
T ss_pred CCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEE--ecCCcccccccce-EEEecceEEEEEe
Confidence 4333445555544 456999999999999999999999999877766655 5566666554444 6889999999999
Q ss_pred eeccCCCCC-CeeEEEcCCCccCCcccEEEe--cceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 176 AQEAEGTQK-PTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 176 ~~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
+ .+.|. |.+.|+++++..+-..+.... +.-+.+.+...+|+|.|+|...|..|.-.....+.+.
T Consensus 730 a---~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 730 A---EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred c---CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence 8 67776 999999977765544444333 3357788888999999999999998876555555443
No 8
>KOG4194|consensus
Probab=99.93 E-value=2e-24 Score=189.43 Aligned_cols=264 Identities=20% Similarity=0.331 Sum_probs=199.0
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc---ccccEE-Ee----------ecCeEEEeecC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY---QTKDIV-VM----------QNGSLLFTRVN 120 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~---~~~~~~-~~----------~~~~l~i~~~~ 120 (460)
.|++...|.......|..++|+|.+.+. ..+.++.|.++....... ....+. .. -.+.|.+.||.
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 4667778888888889999999999763 234479999976632110 000000 00 01359999999
Q ss_pred CCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-
Q psy535 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK- 199 (460)
Q Consensus 121 ~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~- 199 (460)
..|+|.|+|.++|.+|+. .+..+.+.|...|++...|.+. ....|+.+.|.|.+ .|.|.|++.|.+.++..++.
T Consensus 583 ~td~grYQCVvtN~FGSt-ysqk~KltV~~~PsFtktP~dl-tl~tg~mArl~CaA---tG~P~PeIawqkdggtdFPAA 657 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGST-YSQKAKLTVNQAPSFTKTPEDL-TLRTGQMARLECAA---TGHPRPEIAWQKDGGTDFPAA 657 (873)
T ss_pred cccCceEEEEEecccCcc-hhheeEEEeeccCccccCcccc-eeecccceeeeeec---cCCCCcceeehhcCCCCCchh
Confidence 999999999999999988 5567788888899999999987 88999999999999 89999999999988876653
Q ss_pred --ccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecC-CCCCCCceeeeeecceEEEEeecCCCCCCC
Q psy535 200 --NRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT-QPHAPYNITGVATEFSVTLEWLPGYSGGPD 274 (460)
Q Consensus 200 --~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~-~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~ 274 (460)
.|+.+ .+..+.|.++..+|.|.|+|.|.|..|..+....++|.+. .+..|..-.....+..+.++|.+...+..
T Consensus 658 ~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~- 736 (873)
T KOG4194|consen 658 RERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPAD- 736 (873)
T ss_pred hhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCC-
Confidence 34443 3557899999999999999999999999999999999764 33444433455677889999986433221
Q ss_pred ceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCC
Q psy535 275 LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 328 (460)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~ 328 (460)
..+.|+|+.+...........++..-+.+.+..-.+.|.|.|...|..|.-
T Consensus 737 ---pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~ 787 (873)
T KOG4194|consen 737 ---PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTE 787 (873)
T ss_pred ---ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccce
Confidence 237788776543322222334466678888888999999999999999854
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=7.1e-24 Score=185.49 Aligned_cols=210 Identities=20% Similarity=0.382 Sum_probs=147.0
Q ss_pred eEEEeeCC-eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec--CCeeEEcceeeeecceeeEEEEEEE-----ec
Q psy535 11 RVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--PAKVTFTPTVQYLPFRLQGVVQCHI-----KA 82 (460)
Q Consensus 11 r~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~-----~~ 82 (460)
|.....+| .|.|.++..+|+|.|+|.|.|..|.. ...+.|.|.. ++.+...+....+.+|..+.|.|.. .+
T Consensus 74 ~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~ 152 (326)
T PHA02785 74 RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCD-MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIAS 152 (326)
T ss_pred eEEEccCCceEEEcccCcccCeEEEEEEECCCcce-EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccC
Confidence 33333445 59999999999999999999988764 5667777754 3333333344556789999999972 34
Q ss_pred CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee--eEEEEEee---CCCceeeC
Q psy535 83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS--GQMEVLVR---KPPAFTIK 157 (460)
Q Consensus 83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~--~~~~v~v~---~~p~~~~~ 157 (460)
.+++ .++|+++.. + ...++....++.|.|.+++.+|+|.|+|.|.|..|..... ..+.|.|. .||.+ ..
T Consensus 153 ~~~~-~i~W~k~~~-~---~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~ 226 (326)
T PHA02785 153 NVNA-DIIWSGHRR-L---RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QL 226 (326)
T ss_pred CCCc-eEEEccCCc-c---CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cC
Confidence 4444 799998643 2 2345555556789999999999999999999987765433 23444443 23433 34
Q ss_pred CCcccccCCCCeEEEEeeeeccCCCCC---CeeEEEcCCCccCCc------ccEEE------------ecceEEEccccc
Q psy535 158 PEAMYQRKVGESVDMHCEAQEAEGTQK---PTITWQRRDGVALPK------NRVKI------------VGGNITIEGLRR 216 (460)
Q Consensus 158 ~~~~~~~~~g~~~~l~C~~~~~~~~p~---~~~~W~~~~~~~~~~------~~~~~------------~~~~l~i~~~~~ 216 (460)
|... .+..|+.++|.|.+ .+.|. +.+.|+++ +..+.. .++.. ..+.|.|.++..
T Consensus 227 p~~~-~~~~G~~v~L~C~a---~g~P~~~~~~v~W~kn-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~ 301 (326)
T PHA02785 227 PEGV-VTSIGSNLTIACRV---SLRPPTTDADVFWISN-GMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKE 301 (326)
T ss_pred CCcE-EecCCCcEEEEEEE---ECCCCCCCceEEEEEC-CEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcch
Confidence 5444 56789999999999 56665 48999995 433321 12211 134699999999
Q ss_pred eeceEEEEEEecccce
Q psy535 217 VDFGYYECVVSNEVAT 232 (460)
Q Consensus 217 ~~~g~y~C~a~n~~g~ 232 (460)
+|.|.|+|.|.|..|.
T Consensus 302 ~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 302 EDATTFTCMAFTIPSI 317 (326)
T ss_pred hcCeeeEEEEEeccCc
Confidence 9999999999998754
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.91 E-value=1.7e-22 Score=176.83 Aligned_cols=248 Identities=18% Similarity=0.248 Sum_probs=159.5
Q ss_pred eecceeeEEEEEEE-----ecCCCCCeEEEeeCCeecCccccccEEEeecC-eEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 67 YLPFRLQGVVQCHI-----KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG-SLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 67 ~~~~g~~~~l~C~~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
...+|+.+.|.|.+ .|.|.+ .++|+|+|... .+.....++ .|.|.++..+|+|.|+|.+.|..|....
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~-~i~W~K~g~~~-----~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~ 110 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNIL-DILWEKRGADN-----DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMM 110 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCc-eEEEEECCCcc-----ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEE
Confidence 34569999999997 566654 89999987532 122223334 4889999999999999999999887666
Q ss_pred eeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeec--cCCCCCCeeEEEcCCCccCCcccEEEe-cceEEEccccce
Q psy535 141 SGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE--AEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRV 217 (460)
Q Consensus 141 ~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~l~i~~~~~~ 217 (460)
+..++|....++.+...+... .+..|..+.+.|.... ..+.|.+.+.|++ +. .+...+.... ++.|.|.+++..
T Consensus 111 s~~L~V~~~~~~~~~~~~~~~-~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k-~~-~~~~~r~~~~~~~~L~i~~v~~~ 187 (326)
T PHA02785 111 SLNLTIVSVSESNIDLISYPQ-IVNERSTGEMVCPNINAFIASNVNADIIWSG-HR-RLRNKRLKQRTPGIITIEDVRKN 187 (326)
T ss_pred EEEEEEEecCCCccceeeccc-eecccCcEEEECCChhhcccCCCCceEEEcc-CC-ccCCcceEecCCCeEEEeecChh
Confidence 666666555444333222222 4668999999997210 1356889999987 33 3334444433 568999999999
Q ss_pred eceEEEEEEecccceeeee----eEEEEecC--CC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC
Q psy535 218 DFGYYECVVSNEVATIVQA----AQLVVEGT--QP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK 289 (460)
Q Consensus 218 ~~g~y~C~a~n~~g~~~~~----~~l~v~~~--~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~ 289 (460)
|.|.|+|.+.|..|..... +.+.|..+ +| ..|.... ...+..++|.|... +.+.+...-+.|++++...
T Consensus 188 d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~-~~~G~~v~L~C~a~--g~P~~~~~~v~W~kng~~i 264 (326)
T PHA02785 188 DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVV-TSIGSNLTIACRVS--LRPPTTDADVFWISNGMYY 264 (326)
T ss_pred hCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEE-ecCCCcEEEEEEEE--CCCCCCCceEEEEECCEEC
Confidence 9999999999988765432 33444321 12 1122222 23456799999853 3332212235677654311
Q ss_pred Ce------eeeeccC---------CCCceEEEccCccCccEEEEEEEEcCCC
Q psy535 290 DW------LPIPVTP---------PGSTQITINRLTPATTYEFQVVGKNELG 326 (460)
Q Consensus 290 ~~------~~~~~~~---------~~~~~~~i~~l~~~~~~~~~~~a~n~~G 326 (460)
.. ....... .....|.|.++...|.|.|.|.|.|..|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~ 316 (326)
T PHA02785 265 EEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPS 316 (326)
T ss_pred CCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence 00 0111000 0134699999999999999999999885
No 11
>KOG0196|consensus
Probab=99.79 E-value=1.5e-17 Score=151.45 Aligned_cols=214 Identities=24% Similarity=0.317 Sum_probs=153.8
Q ss_pred eEEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC------eee
Q psy535 220 GYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD------WLP 293 (460)
Q Consensus 220 g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 293 (460)
|.-.|...+.+-.......-.-.-.||.+|.++.....+.++.|.|.+|.+.++..-..|-+-.+.-.... ...
T Consensus 306 ga~~C~C~~gyyRA~~Dp~~mpCT~PPSaP~nlis~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~ 385 (996)
T KOG0196|consen 306 GATSCTCENGYYRADSDPPSMPCTRPPSAPRNLISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDN 385 (996)
T ss_pred CCCcccccCCcccCCCCCCCCCCCCCCCccceeeeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCC
Confidence 44456555544332222111122358899999998899999999999998877765555655444322110 001
Q ss_pred ee----ccCCCCceEEEccCccCccEEEEEEEEcCCCCC----CCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecC
Q psy535 294 IP----VTPPGSTQITINRLTPATTYEFQVVGKNELGDG----MLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQP 364 (460)
Q Consensus 294 ~~----~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~----~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~ 364 (460)
+. ...-......+.+|.+.+.|.|.+.|.|.+-.- .....+.+++....|.++..++..... ++++|+|..
T Consensus 386 V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~ 465 (996)
T KOG0196|consen 386 VRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSE 465 (996)
T ss_pred ceECCCCCCcccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCC
Confidence 11 112245679999999999999999999986421 223457778887888999999988877 699999999
Q ss_pred CCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEee
Q psy535 365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444 (460)
Q Consensus 365 ~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n 444 (460)
|...++.|..|+|+|..... .+.+|.... ...+..+|.+|.|++.|.|+|+|+.
T Consensus 466 p~~png~ildYEvky~ek~~-----------~e~~~~~~~---------------t~~~~~ti~gL~p~t~YvfqVRarT 519 (996)
T KOG0196|consen 466 PDQPNGVILDYEVKYYEKDE-----------DERSYSTLK---------------TKTTTATITGLKPGTVYVFQVRART 519 (996)
T ss_pred CCCCCCcceeEEEEEeeccc-----------cccceeEEe---------------cccceEEeeccCCCcEEEEEEEEec
Confidence 99999999999999997642 111121111 3567889999999999999999999
Q ss_pred cCCCCCCCceeEeec
Q psy535 445 ELGDGMLSNIVVVKT 459 (460)
Q Consensus 445 ~~G~s~~s~~~~~~T 459 (460)
.+|.|++|..+.|.|
T Consensus 520 ~aG~G~~S~~~~fqT 534 (996)
T KOG0196|consen 520 AAGYGPYSGKHEFQT 534 (996)
T ss_pred ccCCCCCCCceeeee
Confidence 999999999999987
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.78 E-value=1.3e-17 Score=136.67 Aligned_cols=158 Identities=20% Similarity=0.302 Sum_probs=108.9
Q ss_pred eeeeecceeeEEEEEEEecCCC----------CCeEEEeeCCeecCc-cccc---------cEEEeecCeEEEeecCCCC
Q psy535 64 TVQYLPFRLQGVVQCHIKANPT----------FQYVTWTKDKRLLEP-YQTK---------DIVVMQNGSLLFTRVNQNH 123 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~----------~~~v~W~~~~~~~~~-~~~~---------~~~~~~~~~l~i~~~~~~d 123 (460)
....+.+|+++.|.|.+.+.++ ...|.|+|++...-. .... ......++.|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 3456778999999999876442 236999998764210 0001 1111234689999999999
Q ss_pred CeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCccc
Q psy535 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALPKNR 201 (460)
Q Consensus 124 ~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~~~ 201 (460)
+|.|+|.|.|..+.... .+.|.|..++ ... .+..|+.+.|.|.+... .+.|.|.+.|++++..+....+
T Consensus 110 sG~Y~C~a~N~~~~~~~--~i~L~V~~~~------~~~-~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r 180 (227)
T PHA02826 110 EGIYICTISSGNICEES--TIRLTFDSGT------INY-QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR 180 (227)
T ss_pred CEEEEEEEEECCcceEE--EEEEEEecCC------ccc-eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence 99999999997766544 4455553322 112 46789999999997311 1356789999995554444445
Q ss_pred EEEe--cceEEEccccceeceEEEEEEeccc
Q psy535 202 VKIV--GGNITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 202 ~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
+... ++.|.|.++..+|+|.|+|.|....
T Consensus 181 ~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 181 IQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 5543 3579999999999999999998754
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.75 E-value=2.3e-17 Score=135.18 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=85.4
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCC----CCCeEEEe
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANP----TFQYVTWT 92 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~----~~~~v~W~ 92 (460)
+++|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|..++ ....+.+|+++.|.|.+.+.+ +.++|+|+
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy 169 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY 169 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence 5699999999999999999999977653 566777774322 234567899999999986432 23589999
Q ss_pred eCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 93 KDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
|++.++... .++... .+++|.|.+++.+|+|.|+|.|......
T Consensus 170 Kng~~l~~~--~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 170 KNGNIVLYT--DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred ECCEECCCC--CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 999998632 344333 3457999999999999999999875433
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.65 E-value=1.4e-15 Score=105.73 Aligned_cols=87 Identities=20% Similarity=0.347 Sum_probs=71.7
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
||.+...+.+..+.+|+.+.|.|.+.|.|.| .++|+|++.++... .++ ...++.|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~~~~~--~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVP-VIRWRKILEPMPAT--AEI-SMSGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCC-EEEEEECCcCCCCC--CEE-ecCCCEEEECcCChhhCEEEEEEEEcCC
Confidence 5778888888999999999999999999877 79999999877532 222 2345689999999999999999999999
Q ss_pred CCcceeeEEEE
Q psy535 136 GTQGSSGQMEV 146 (460)
Q Consensus 136 g~~~~~~~~~v 146 (460)
|....++.+.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 99766655544
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.63 E-value=4.1e-15 Score=105.49 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=73.1
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEc
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
|.|...|....+..|+.+.|.|.+.|.|++ .+.|+|+|..+... .++.+. ..+.|.|.++..+|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~l~~~--~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQIQEG--EGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCC-ceEEEECCEEecCC--CcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 456778888999999999999999998876 79999999998642 333333 245799999999999999999999
Q ss_pred CCCCcceeeEEEEEeeCCC
Q psy535 134 AHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 134 ~~g~~~~~~~~~v~v~~~p 152 (460)
..|...++ +.|.|..+|
T Consensus 78 ~~G~~~~~--~~l~V~~~P 94 (98)
T cd05762 78 KLGSRQAQ--VNLTVVDKP 94 (98)
T ss_pred CCCceeEE--EEEEEecCC
Confidence 99997665 445555555
No 16
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.62 E-value=6.7e-15 Score=104.30 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=62.0
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee-------cCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-------NGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
....+.+|+++.|.|.+.|+++++.+.|+|||.++.... ....... .+.|.|.++..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKL-TEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCc-ceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 356678899999999999944445899999999987422 2121211 25799999999999999999999999
Q ss_pred CcceeeEEEE
Q psy535 137 TQGSSGQMEV 146 (460)
Q Consensus 137 ~~~~~~~~~v 146 (460)
.......+.|
T Consensus 90 ~~~~t~~L~V 99 (101)
T cd04975 90 SKSLTFELYV 99 (101)
T ss_pred cEEEEEEEEE
Confidence 8655544444
No 17
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.61 E-value=3.8e-15 Score=99.01 Aligned_cols=72 Identities=28% Similarity=0.530 Sum_probs=62.0
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
|+++.|.|.+.|.|.+ .|+|+|++..+. ...++.+..+++|.|.+++.+|+|.|+|.|.|..|....++.++
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~k~~~~l~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKP-KFSWSKGTELLV--NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCC-EEEEEeCCEecc--cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 5789999999998876 899999998875 34577777788999999999999999999999999987766654
No 18
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.60 E-value=2.9e-14 Score=109.21 Aligned_cols=116 Identities=21% Similarity=0.291 Sum_probs=84.6
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC-CCeEEEeeCCee
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDKRL 97 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~ 97 (460)
+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+.+.+.......|+.++|.|.+.+..+ ...|+|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 79999999999999999999877764 7888999999999888776555557888999999999644 358999998864
Q ss_pred cCc-------cccccEEEeecC------eEEEeecCCCCCeEEEEEEEcCC
Q psy535 98 LEP-------YQTKDIVVMQNG------SLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 98 ~~~-------~~~~~~~~~~~~------~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
... ..........++ .|.|......+.+.|+|.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 211 001112222333 35555444456779999998654
No 19
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.60 E-value=6.4e-15 Score=99.07 Aligned_cols=73 Identities=26% Similarity=0.454 Sum_probs=61.1
Q ss_pred ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
+|+++.|.|.+.|.|.| .++|+|++..+.. ..+.....++.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus 1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQLSV--DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCC-EEEEEECCEECCC--CCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 58899999999999877 7999999998863 3445556678999999999999999999999999876655443
No 20
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.58 E-value=1.9e-14 Score=97.39 Aligned_cols=75 Identities=21% Similarity=0.418 Sum_probs=60.8
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
|+++.|.|.+.|.|.| .++|+|+|.++............++.|.|.+++.+|+|.|+|.|.|..|.....+.+.|
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999999999876 79999999988653333233456778999999999999999999999998766655544
No 21
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.58 E-value=2.5e-14 Score=100.58 Aligned_cols=86 Identities=19% Similarity=0.391 Sum_probs=64.3
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeec----CeEEEeecCCCCCeEEEEEEEcC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQN----GSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+.|....+.+|+++.|.|.+.|.|.++.++|++ ++..+... ..++.+..+ ++|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 4567777788999999999999998655899998 77666431 234333322 57999999999999999999998
Q ss_pred C-CCcceeeEEEEEe
Q psy535 135 H-GTQGSSGQMEVLV 148 (460)
Q Consensus 135 ~-g~~~~~~~~~v~v 148 (460)
. |..++ .+.|.|
T Consensus 83 ~~g~~~~--s~~l~v 95 (96)
T cd05865 83 DEGESEA--TVNVKI 95 (96)
T ss_pred CCCcEEE--EEEEEE
Confidence 6 55444 444443
No 22
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=5.1e-14 Score=98.50 Aligned_cols=87 Identities=20% Similarity=0.396 Sum_probs=69.5
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
|+.+...|....+.+|+.+.|.|.+.|.|.+ .++|+|++..+... .. ....++.|.|.+++.+|+|.|+|.|.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~--~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVP-QIKWRKVDGSMPSS--AE-ISMSGAVLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCCCc--cE-EEEeCCEEEECCCCcccCEEEEEEEEECC
Confidence 3455667788888899999999999998876 79999988766432 12 22466789999999999999999999999
Q ss_pred CCcceeeEEEE
Q psy535 136 GTQGSSGQMEV 146 (460)
Q Consensus 136 g~~~~~~~~~v 146 (460)
|....+..+.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd04968 77 GKDTHQGRIYV 87 (88)
T ss_pred CcEEEEEEEEE
Confidence 98766655544
No 23
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.56 E-value=2.8e-14 Score=96.17 Aligned_cols=75 Identities=19% Similarity=0.378 Sum_probs=60.6
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
|+++.|.|.+.|.|.| .|+|+|+|.++............++.|.|.+++..|+|.|+|.|.|..|...+++.+.|
T Consensus 1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 5789999999999876 79999999988643222333345568999999999999999999999999877766654
No 24
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.55 E-value=3.6e-14 Score=94.58 Aligned_cols=70 Identities=26% Similarity=0.529 Sum_probs=56.4
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec--C--eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN--G--SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~--~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
+.|.|.+.|.|.| .|.|+|++..+... ..++.+..+ + +|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~v~G~P~P-~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPP-KIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCC-eEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 5799999999887 79999999988642 235544433 2 699999999999999999999999876666554
No 25
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.55 E-value=6.3e-14 Score=98.79 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=69.9
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~ 131 (460)
.||.+...|....+.+|+++.|.|.+.|.|.+ .+.|+|+|..+... .++.+.. .+.|.|.++..+|+|.|+|.|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIVSS--QRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEECCCC--CcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 36788888989999999999999999999876 79999999887632 3333333 247999999999999999999
Q ss_pred EcCCCCcceee
Q psy535 132 YNAHGTQGSSG 142 (460)
Q Consensus 132 ~~~~g~~~~~~ 142 (460)
.|..|....+.
T Consensus 79 ~N~~G~~~~~~ 89 (92)
T cd05747 79 ENSEGKQEAQF 89 (92)
T ss_pred EcCCCCEeEEE
Confidence 99999865443
No 26
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.55 E-value=4.7e-14 Score=97.63 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=67.9
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
|...|....+.+|+++.|.|.+.|.|.+ .+.|+|++.++.. ..++. ..++.|.|.++..+|+|.|+|.|.|..|..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~~~~--~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRP-AYRWLKNGQPLAS--ENRIE-VEAGDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEECCC--CCeEE-EeCCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 3456777889999999999999999876 7999999998853 23333 456789999999999999999999999986
Q ss_pred ceeeEEE
Q psy535 139 GSSGQME 145 (460)
Q Consensus 139 ~~~~~~~ 145 (460)
..+..+.
T Consensus 78 ~~~~~l~ 84 (85)
T cd05728 78 YASAELA 84 (85)
T ss_pred EEEEEEE
Confidence 5555443
No 27
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.54 E-value=6e-14 Score=99.80 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=64.7
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee-cCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG 142 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~ 142 (460)
....+..|+++.|.|.+.|.|.+ .+.|+++|..+... ..++.... .+.|.|.++..+|+|.|+|.|.|..|....+.
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEP-TMTWTKDGEPIESG-EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCC-EEEEEECCEECcCC-CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 34467889999999999998876 79999999988643 23333333 34699999999999999999999999876666
Q ss_pred EEEEE
Q psy535 143 QMEVL 147 (460)
Q Consensus 143 ~~~v~ 147 (460)
.+.|.
T Consensus 89 ~L~V~ 93 (95)
T cd05730 89 HLKVF 93 (95)
T ss_pred EEEEE
Confidence 65554
No 28
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.54 E-value=6.8e-14 Score=93.05 Aligned_cols=70 Identities=21% Similarity=0.460 Sum_probs=58.0
Q ss_pred eEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 73 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
++.|.|.+.|.|.| .++|+|++..+.+ ..++....++.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus 1 ~v~l~C~~~G~P~p-~v~W~k~g~~~~~--~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTP-TVKWVKNGDMVIP--SDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCC-EEEEEECCeECCC--CCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 47899999999876 7999999998864 3445556677899999999999999999999999876655443
No 29
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.54 E-value=3e-14 Score=92.06 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=55.8
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
+.|.|.+.|.|.| .++|+|||.++... ...+.|.|.++..+|+|.|+|.|.|..|....+..++|.|
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~v 67 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELIV 67 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEEC
Confidence 4799999999887 79999999998521 1345799999999999999999999999876776666643
No 30
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.53 E-value=7.7e-14 Score=94.39 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=58.4
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
++|.|.+.|.|.| .++|+|+|.++.............+.|.|.++..+|+|.|+|.|.|..|....+..++|.|.
T Consensus 1 v~L~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRP-TYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCC-cEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5799999999876 79999999988643222222233458999999999999999999999998766667777653
No 31
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.53 E-value=8.3e-14 Score=98.11 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=62.9
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec--CeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN--GSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
.|....+.+|+++.|.|.+.|.|.| .+.|+|++.++......++..... ..|.|.++..+|+|.|+|.|.|..|...
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 4556778899999999999999876 799999999986432222222212 3699999999999999999999999865
Q ss_pred eeeE
Q psy535 140 SSGQ 143 (460)
Q Consensus 140 ~~~~ 143 (460)
....
T Consensus 86 ~~~~ 89 (92)
T cd05737 86 VDVT 89 (92)
T ss_pred EEEE
Confidence 5433
No 32
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.53 E-value=1.2e-13 Score=96.00 Aligned_cols=87 Identities=23% Similarity=0.373 Sum_probs=72.2
Q ss_pred CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccc
Q psy535 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
||.+...+... .+..|+.+.|.|.+ .|.|.|.+.|++++.......++...+..|.|.++..+|.|.|+|.|.|..
T Consensus 1 ~p~i~~~~~~~-~~~~G~~v~l~C~~---~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDT-YALKGQNVTLECFA---LGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccE-EEeCCCcEEEEEEe---cccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCC
Confidence 46677777766 68899999999999 899999999999665443444455556789999999999999999999999
Q ss_pred ceeeeeeEEEE
Q psy535 231 ATIVQAAQLVV 241 (460)
Q Consensus 231 g~~~~~~~l~v 241 (460)
|.......|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 99888887765
No 33
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.53 E-value=5.9e-14 Score=93.78 Aligned_cols=70 Identities=20% Similarity=0.434 Sum_probs=56.9
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC----eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
+.|.|.+.|.|.| .|+|+|++..+.. ...++....++ .|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~v~G~P~P-~v~W~k~~~~l~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHP-QIFWKKENESLTH-NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECCC-CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 5799999999887 8999999998864 23455554443 599999999999999999999999987666554
No 34
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.53 E-value=5.7e-14 Score=92.12 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=58.1
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
+.|.|.+.|.|.| .++|+|+|.++... .+ ...+..|.|.++..+|+|.|+|.|.|..|..+.+.+++|.|
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~~--~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v 70 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQLIVLN--HT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV 70 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC--CE--EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence 4689999999887 79999999998642 22 23455799999999999999999999999888887877754
No 35
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.52 E-value=1.2e-13 Score=98.09 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=62.9
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--------ecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--------QNGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
...+..|+.+.|.|.+.|.|+| .+.|+|+|.++..... .+... ..++|.|.++..+|+|.|+|.|.|..|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~l~~~~~-~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPP-QIRWLKDNRTLIENLT-EITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCC-ceEEEECCEECcCCcc-eEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 4556778999999999999887 7999999999864221 11111 125799999999999999999999998
Q ss_pred CcceeeEEEEE
Q psy535 137 TQGSSGQMEVL 147 (460)
Q Consensus 137 ~~~~~~~~~v~ 147 (460)
....+..+.|.
T Consensus 90 ~~~~t~~l~V~ 100 (101)
T cd05859 90 VKSYTFALQIQ 100 (101)
T ss_pred eEEEEEEEEEE
Confidence 87666555553
No 36
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.52 E-value=8.8e-14 Score=93.29 Aligned_cols=72 Identities=29% Similarity=0.575 Sum_probs=60.4
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
|+++.|.|.+.|.|.+ .++|+|++..+.. ..++....++.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~~~~~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKP-TISWSKGTELLTN--SSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCC-EEEEEECCEEccc--CCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 5789999999998876 8999999998763 3456666778899999999999999999999999876655543
No 37
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.52 E-value=2.9e-13 Score=94.10 Aligned_cols=84 Identities=17% Similarity=0.354 Sum_probs=65.9
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
.++|....+.+|+++.|.|.+.|.|. .++|++ ++.++.. ..++....++ .|.|.++..+|+|.|+|.|.|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~ 79 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIVS--SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAK 79 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeEecC--CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCC
Confidence 45677778899999999999999875 699998 4666643 3455555555 79999999999999999999999
Q ss_pred CCcceeeEEEEEe
Q psy535 136 GTQGSSGQMEVLV 148 (460)
Q Consensus 136 g~~~~~~~~~v~v 148 (460)
|... ...+.|.+
T Consensus 80 G~~~-~~~i~l~~ 91 (92)
T cd05866 80 GQTQ-EATVVLEI 91 (92)
T ss_pred CcEE-EEEEEEEE
Confidence 8763 55555543
No 38
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.52 E-value=1.9e-13 Score=97.07 Aligned_cols=87 Identities=26% Similarity=0.361 Sum_probs=68.3
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeec-----CCCCCeEEEEEEEc
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV-----NQNHQGRYTCTPYN 133 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~~ 133 (460)
|...|....+.+|+++.|.|.+.+.|.+ .++|+|+|..+......+.....++.|.|.++ ...|+|.|+|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCC-EEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 3456777778889999999999998865 89999999998754444455666777888776 58999999999999
Q ss_pred C-CCCcceeeEEEEE
Q psy535 134 A-HGTQGSSGQMEVL 147 (460)
Q Consensus 134 ~-~g~~~~~~~~~v~ 147 (460)
. .|.. .+..+.|.
T Consensus 81 ~~~G~~-~s~~~~l~ 94 (95)
T cd05722 81 DSLGSI-VSRTARLT 94 (95)
T ss_pred CccCcE-EEeeeEEe
Confidence 9 8876 35555554
No 39
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.51 E-value=3.7e-13 Score=94.92 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=63.6
Q ss_pred CeeEEcceeeeecce---eeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecC-CCCCeEEEEEEE
Q psy535 57 AKVTFTPTVQYLPFR---LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN-QNHQGRYTCTPY 132 (460)
Q Consensus 57 p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~ 132 (460)
|.|...|....+.+| ++++|.|.+.|.|.+ .++|+++|..+......++. ..++.|.|.++. ..|+|.|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~~~~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPA-TYRWKMNGTEIKFAPESRYT-LVAGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCC-EEEEEECCEECccCCCceEE-EECCeEEEccCCccCcCEEEEEEEE
Confidence 456667777776665 579999999999876 89999999998643333433 456789998865 599999999999
Q ss_pred cCCCCcc
Q psy535 133 NAHGTQG 139 (460)
Q Consensus 133 ~~~g~~~ 139 (460)
|..|...
T Consensus 80 N~~G~~~ 86 (94)
T cd05850 80 NRCGTVV 86 (94)
T ss_pred cCcCcEE
Confidence 9999773
No 40
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.51 E-value=2.6e-13 Score=96.20 Aligned_cols=93 Identities=29% Similarity=0.459 Sum_probs=74.2
Q ss_pred CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEe
Q psy535 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVS 227 (460)
Q Consensus 152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~ 227 (460)
|.|...+... .+..|+.+.|.|.+ .|.|.+.+.|++++..+....++... ...|.|.++...|+|.|+|.|.
T Consensus 1 p~~~~~p~~~-~v~~G~~v~l~C~~---~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~ 76 (98)
T cd05762 1 PQIIQFPEDM-KVRAGESVELFCKV---TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVE 76 (98)
T ss_pred CceEECCcCE-EEECCCEEEEEEEE---cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEE
Confidence 3445556555 68999999999999 89999999999955444334455443 3579999999999999999999
Q ss_pred cccceeeeeeEEEEecCCCCCC
Q psy535 228 NEVATIVQAAQLVVEGTQPHAP 249 (460)
Q Consensus 228 n~~g~~~~~~~l~v~~~~p~~p 249 (460)
|..|....++.|.|.+. |.+|
T Consensus 77 N~~G~~~~~~~l~V~~~-P~pP 97 (98)
T cd05762 77 NKLGSRQAQVNLTVVDK-PDPP 97 (98)
T ss_pred cCCCceeEEEEEEEecC-CCCC
Confidence 99999999999999863 4544
No 41
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.51 E-value=2.1e-13 Score=94.20 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=61.6
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
...+.+|+.+.|.|.+.|.|.| .+.|+|++.++... ..++.+.. .+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~i~~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~ 81 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAP-TVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHAS 81 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCC-eEEEEECCEECccC-CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence 3567789999999999999877 89999999998642 23444332 2479999999999999999999999986544
Q ss_pred eE
Q psy535 142 GQ 143 (460)
Q Consensus 142 ~~ 143 (460)
..
T Consensus 82 ~~ 83 (86)
T cd05894 82 LF 83 (86)
T ss_pred EE
Confidence 33
No 42
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.51 E-value=2.4e-13 Score=96.85 Aligned_cols=89 Identities=24% Similarity=0.410 Sum_probs=66.7
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc---cccEEEeec---CeEEEeecCCCCCeEEEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ---TKDIVVMQN---GSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~~---~~l~i~~~~~~d~G~y~C 129 (460)
.|.|...+....+..|+.++|.|.+.|.|.| .++|++++..+.... ..++.+... +.|.|.++..+|+|.|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C 80 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC 80 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence 4666666666666668999999999998876 899999887764321 123332222 479999999999999999
Q ss_pred EEEcCCCCcceeeEEE
Q psy535 130 TPYNAHGTQGSSGQME 145 (460)
Q Consensus 130 ~~~~~~g~~~~~~~~~ 145 (460)
.|.|..|....+..|.
T Consensus 81 ~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 81 TASNTIGQDSQSMYLE 96 (97)
T ss_pred EEecCCCCeeEEEEEE
Confidence 9999999876655543
No 43
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.51 E-value=1.5e-13 Score=93.32 Aligned_cols=75 Identities=21% Similarity=0.398 Sum_probs=60.7
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
|+++.|.|.+.|.|.| .|.|+++|..+.............+.|.|.+++.+|+|.|+|.|.|..|...+++.+.|
T Consensus 1 G~~~~l~C~~~g~P~p-~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQP-TITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCC-EEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6789999999998876 79999999988653333234455678999999999999999999999998766655544
No 44
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.50 E-value=1.6e-13 Score=92.05 Aligned_cols=72 Identities=25% Similarity=0.476 Sum_probs=58.6
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
++|.|.+.|.|.| .|+|+|++.++......++....++.|.|.+++.+|+|.|+|.|.|..|.. .+....|.
T Consensus 1 a~l~C~~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~-~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDP-EITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTR-YSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCce-EcccEEEE
Confidence 4799999999876 799999999886544566777777899999999999999999999999875 33344443
No 45
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.50 E-value=1.3e-13 Score=91.37 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=58.5
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
+.|.|.+.|.|++ .+.|+|+|.++... .......++|.|.++..+|+|.|+|.|.|..|....+..+.|.|
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~---~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~v 71 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKLISEK---NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLVV 71 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC---CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEEC
Confidence 4689999999876 79999999998642 23345567899999999999999999999999877777766643
No 46
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.50 E-value=3.2e-13 Score=92.99 Aligned_cols=79 Identities=28% Similarity=0.506 Sum_probs=58.9
Q ss_pred eeEEEEEEEecCCCCC-eEEEeeCCeecCccc-cccEE---E-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 72 LQGVVQCHIKANPTFQ-YVTWTKDKRLLEPYQ-TKDIV---V-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 72 ~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~-~~~~~---~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
++++|.|.+.|.|.+. .++|+++|.++.... ..++. . ...++|.|.+++..|+|.|+|.|.|..|....++.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~-- 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT-- 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE--
Confidence 3689999999998763 689999998875322 12221 1 13468999999999999999999999988655544
Q ss_pred EEeeCCC
Q psy535 146 VLVRKPP 152 (460)
Q Consensus 146 v~v~~~p 152 (460)
|.|..||
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 5555555
No 47
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.50 E-value=3.9e-13 Score=94.68 Aligned_cols=80 Identities=18% Similarity=0.394 Sum_probs=61.9
Q ss_pred CeeEEcceeeeec---ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecC-CCCCeEEEEEEE
Q psy535 57 AKVTFTPTVQYLP---FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN-QNHQGRYTCTPY 132 (460)
Q Consensus 57 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~ 132 (460)
|.|...|....+. +|++++|.|.+.|.|.+ .|+|+|+|..+......++ ...++.|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~~~~~~~~-~~~~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVP-TYRWLRNGTEIDTESDYRY-SLIDGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCC-EEEEEECCeECccCCCceE-EeeCCeEEEccCCccCcCEEEEEEEE
Confidence 4555666665443 46899999999999877 8999999998864333333 3456789999875 699999999999
Q ss_pred cCCCCc
Q psy535 133 NAHGTQ 138 (460)
Q Consensus 133 ~~~g~~ 138 (460)
|..|..
T Consensus 80 N~~G~~ 85 (94)
T cd05848 80 NSIGSI 85 (94)
T ss_pred cCCCeE
Confidence 999976
No 48
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.49 E-value=4.2e-13 Score=93.21 Aligned_cols=78 Identities=19% Similarity=0.480 Sum_probs=60.3
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee----c---CeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ----N---GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~ 143 (460)
|+.++|.|.+.|.|++ .++|+|++..+.... .++.+.. . ++|.|.++..+|+|.|+|.|.|..|.....
T Consensus 1 g~~~~l~C~~~g~p~~-~i~W~k~~~~i~~~~-~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~-- 76 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IVRWEKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI-- 76 (88)
T ss_pred CCeEEEEEEEECCCCC-EEEEeeCCEECCCCC-CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE--
Confidence 6789999999998765 899999998886432 3443322 1 469999999999999999999999986554
Q ss_pred EEEEeeCCC
Q psy535 144 MEVLVRKPP 152 (460)
Q Consensus 144 ~~v~v~~~p 152 (460)
+.|.|..+|
T Consensus 77 ~~L~V~~~P 85 (88)
T cd05735 77 IQLTVQEPP 85 (88)
T ss_pred EEEEEeCCC
Confidence 555555565
No 49
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.49 E-value=2.4e-13 Score=92.25 Aligned_cols=79 Identities=19% Similarity=0.394 Sum_probs=58.7
Q ss_pred eeEEEEEEEecCC-CCCeEEEeeCCeecCcc-ccccEEE----eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 72 LQGVVQCHIKANP-TFQYVTWTKDKRLLEPY-QTKDIVV----MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 72 ~~~~l~C~~~~~~-~~~~v~W~~~~~~~~~~-~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
+++.|.|.+.+.+ .+..+.|++||.++... ...++.. ..++.|.|.+++..|+|.|+|.|.|..+...+++.+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 3689999997733 23479999999999632 2234433 2456899999999999999999999998876665555
Q ss_pred EEeeCCC
Q psy535 146 VLVRKPP 152 (460)
Q Consensus 146 v~v~~~p 152 (460)
| ..||
T Consensus 81 V--~~pP 85 (85)
T cd05853 81 V--RGPP 85 (85)
T ss_pred E--ecCC
Confidence 4 5565
No 50
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.49 E-value=4.6e-13 Score=93.86 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=61.7
Q ss_pred CeeEEcceeeeecce---eeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecC-CCCCeEEEEEEE
Q psy535 57 AKVTFTPTVQYLPFR---LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN-QNHQGRYTCTPY 132 (460)
Q Consensus 57 p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~ 132 (460)
|.|...|....+.++ ..+.|.|.+.|.|.+ .++|+|++..+... ..++ ...++.|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P-~i~W~k~~~~i~~~-~~~~-~~~~g~L~I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFP-IYKWRKNNLDIDLT-NDRY-SMVGGNLVINNPDKYKDAGRYVCIVS 78 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCC-EEEEEECCEEccCC-CCeE-EEECCEEEECcCCcCCCCEEEEEEEE
Confidence 556666666655544 379999999999877 89999999987532 2333 3457889999885 689999999999
Q ss_pred cCCCCcc
Q psy535 133 NAHGTQG 139 (460)
Q Consensus 133 ~~~g~~~ 139 (460)
|..|...
T Consensus 79 N~~G~~~ 85 (93)
T cd05849 79 NIYGKVR 85 (93)
T ss_pred eCcceEE
Confidence 9999763
No 51
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.49 E-value=5.2e-13 Score=96.53 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=63.0
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcc---ccccEEEeecCeEEEee-----cCCCCCeEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY---QTKDIVVMQNGSLLFTR-----VNQNHQGRY 127 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~-----~~~~d~G~y 127 (460)
||.+...|....+.+|+++.|.|.+.|.|.+ .+.|+|+|..+... .........++.+.+.. +..+|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 5778888889999999999999999999876 79999999988641 11223333444443332 368999999
Q ss_pred EEEEEcCCCCc
Q psy535 128 TCTPYNAHGTQ 138 (460)
Q Consensus 128 ~C~~~~~~g~~ 138 (460)
+|.|.|..|..
T Consensus 80 ~C~a~N~~G~~ 90 (100)
T cd07693 80 VCVAHNSLGEA 90 (100)
T ss_pred EEEEEccccce
Confidence 99999999984
No 52
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.49 E-value=3.3e-13 Score=94.10 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=63.9
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
.+.++.+.+|++++|.|.+.|. .+ .+.|+|++..+.. .++... .++.|.|.+++.+|+|.|+|.|.|..|.. .
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~l~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~ 82 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSLLVP---PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNM-T 82 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CC-EEEEEECCEECCC---CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCE-E
Confidence 3445678899999999999998 54 8999999998753 233333 34589999999999999999999999986 4
Q ss_pred eeEEEEEe
Q psy535 141 SGQMEVLV 148 (460)
Q Consensus 141 ~~~~~v~v 148 (460)
+..+.|.|
T Consensus 83 S~~~~L~V 90 (91)
T cd05740 83 SDPYILNV 90 (91)
T ss_pred eeeEEEEe
Confidence 55565554
No 53
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.48 E-value=4.3e-13 Score=93.64 Aligned_cols=76 Identities=22% Similarity=0.501 Sum_probs=62.6
Q ss_pred cceeeeecceeeEEEEEEE-ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 62 TPTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
.|....+.+|+++.|.|.+ .+.|.+ .+.|+|++..+... ..++....++.|.|.++..+|+|.|+|.|.|..|...
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLD-NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCC-CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 4566778899999999998 576655 89999999988652 3455555678899999999999999999999988763
No 54
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.48 E-value=2.8e-13 Score=95.65 Aligned_cols=87 Identities=26% Similarity=0.363 Sum_probs=68.8
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
|.|...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......+... ....|.|.++..+|+|.|+|.|.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSS-EEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCC-cccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 567778888999999999999999998765 8999999999875322222222 23469999999999999999999998
Q ss_pred CCcceeeEE
Q psy535 136 GTQGSSGQM 144 (460)
Q Consensus 136 g~~~~~~~~ 144 (460)
|.......+
T Consensus 80 g~~~~~~~l 88 (90)
T PF07679_consen 80 GEATASVNL 88 (90)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 876555444
No 55
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.48 E-value=1.6e-13 Score=92.24 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=57.1
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
|.+.+.|....+.+|++++|.|.+.+.|.+..+.|+|||..+.. ..+.|.|.++ .+|+|.|+|+|.+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 35667888888999999999999998876557999999988731 3457999999 99999999999864
No 56
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.48 E-value=1.8e-13 Score=90.46 Aligned_cols=67 Identities=25% Similarity=0.434 Sum_probs=56.2
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~ 143 (460)
+.|.|.+.|.|.+ .++|+|++..+.. ..++.+..++.|.|.++..+|+|.|+|.|.|..|....+..
T Consensus 1 v~L~C~~~g~P~p-~i~W~k~g~~~~~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 1 VQIPCSAQGDPEP-TITWNKDGVQVTE--SGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred CEeEecceEeCCC-EEEEEECCEECCC--CCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 4799999999876 7999999988763 34556666789999999999999999999999998755543
No 57
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.47 E-value=3.6e-13 Score=94.51 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=63.2
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
.|....+.+|+.+.|.|.+.|.|.| .+.|++++..+......... ....+.|.|.++..+|.|.|+|.|.|..|....
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 4555668899999999999999876 89999999987532111111 122347999999999999999999999998765
Q ss_pred eeEEE
Q psy535 141 SGQME 145 (460)
Q Consensus 141 ~~~~~ 145 (460)
+..+.
T Consensus 85 ~~~L~ 89 (90)
T cd04972 85 SVQVT 89 (90)
T ss_pred EEEEe
Confidence 55443
No 58
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.47 E-value=4.9e-13 Score=92.73 Aligned_cols=79 Identities=25% Similarity=0.459 Sum_probs=58.4
Q ss_pred eeEEEEEEEecCCCCC-eEEEeeCCeecCcccc-c----cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 72 LQGVVQCHIKANPTFQ-YVTWTKDKRLLEPYQT-K----DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 72 ~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~-~----~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
+++.|.|.+.+.|.+. .+.|+++|..+..... . .......+.|.|.+++..|+|.|+|.|.|..|.... .+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~--~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA--SAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEE--EEE
Confidence 4689999999987653 5799999998753221 1 111234578999999999999999999999887644 455
Q ss_pred EEeeCCC
Q psy535 146 VLVRKPP 152 (460)
Q Consensus 146 v~v~~~p 152 (460)
|.|..||
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 5566565
No 59
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.46 E-value=5.1e-13 Score=89.68 Aligned_cols=70 Identities=24% Similarity=0.481 Sum_probs=55.4
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC----eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
+.|.|.+.|.|.| .|.|+|++..+... ..++.+..++ +|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 1 v~L~C~v~G~P~P-~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPP-QIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCC-eEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 4799999999887 79999999988642 2344443332 599999999999999999999999876665543
No 60
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.46 E-value=9.3e-13 Score=94.00 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=64.6
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCcc---ccccEEEee---cCeEEEeecCCCCCeEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEPY---QTKDIVVMQ---NGSLLFTRVNQNHQGRY 127 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~G~y 127 (460)
+|.+. .+.+..+.+|++++|.|.+.|.|.+ .+.|+|+ +..+... ...++.+.. .+.|.|.++..+|+|.|
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y 79 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRY 79 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEE
Confidence 45654 4667888899999999999998876 7999994 4433211 123444432 24799999999999999
Q ss_pred EEEEEcCCCCcceeeEE
Q psy535 128 TCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 128 ~C~~~~~~g~~~~~~~~ 144 (460)
+|.|.|..|....+..|
T Consensus 80 ~C~A~N~~G~~~~~~~l 96 (98)
T cd05870 80 DCEAASRIGGHQKSMYL 96 (98)
T ss_pred EEEEeccCCcceeEEEE
Confidence 99999999987655444
No 61
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.46 E-value=6.4e-13 Score=93.24 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=62.1
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec--CeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN--GSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
.|....+.+|+++.|.|.+.+.|.+ .+.|++++..+............. .+|.|.++..+|+|.|+|.|.|..|...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 4556778899999999999998766 799999998876422112222222 2699999999999999999999999875
Q ss_pred eeeE
Q psy535 140 SSGQ 143 (460)
Q Consensus 140 ~~~~ 143 (460)
.+..
T Consensus 86 ~~~~ 89 (92)
T cd05891 86 VDVT 89 (92)
T ss_pred eEEE
Confidence 5443
No 62
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.44 E-value=1.4e-12 Score=93.11 Aligned_cols=86 Identities=24% Similarity=0.434 Sum_probs=66.7
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-------CeEEEeecCCC-CCeEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-------GSLLFTRVNQN-HQGRY 127 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~-d~G~y 127 (460)
||.+. .+....+.+|+++.|.|.+.|.|.|..|.|++++..+......++.+... +.|.|.++..+ |.|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 45553 45566778899999999999988775699999999887544455555443 36999999994 59999
Q ss_pred EEEEEcCCCCcceee
Q psy535 128 TCTPYNAHGTQGSSG 142 (460)
Q Consensus 128 ~C~~~~~~g~~~~~~ 142 (460)
+|.|.|..|......
T Consensus 81 ~C~A~N~~G~~~~~~ 95 (98)
T cd05758 81 NCTAWNSFGSGTAII 95 (98)
T ss_pred EEEEEcCCCcccEEE
Confidence 999999999875543
No 63
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.44 E-value=5.8e-13 Score=88.53 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=53.8
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
+.|.|.+.|.|.| .+.|+|++..+... .......+++|.|.++..+|+|.|+|.|.|..|.......+
T Consensus 1 ~~L~C~~~G~P~P-~v~W~k~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 1 LVLECIAEGLPTP-EVHWDRIDGPLSPN--RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCcCCCCC--ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 4789999999887 79999999877532 22233456789999999999999999999999986554443
No 64
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.44 E-value=9.7e-13 Score=89.51 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=58.8
Q ss_pred ceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
|....+.+|+.+.|.|.+.+. .+ .+.|+|+|.++... .++.+ ..+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~l~~~--~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~ 74 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQLGEN--NRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGSDTTY 74 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-Cc-eEEEeeCCcCCCCC--ceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence 345667889999999999885 33 79999999988642 33433 45689999999999999999999988775443
No 65
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.44 E-value=2.2e-12 Score=90.57 Aligned_cols=84 Identities=23% Similarity=0.428 Sum_probs=62.2
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeec----CeEEEeecCCCCCeEEEEEEEc
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQN----GSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
+.+.|....+.+|+++.|.|.+.|.| + .++|++ ++..+.. ..++....+ ++|.|.++..+|+|.|+|.|.|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEP-K-DISWFSPNGEKLVT--QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeC-C-eEEEECCCCCEecc--CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEc
Confidence 34567778889999999999999985 3 799998 5655543 223333333 3799999999999999999999
Q ss_pred CCCCcceeeEEEEE
Q psy535 134 AHGTQGSSGQMEVL 147 (460)
Q Consensus 134 ~~g~~~~~~~~~v~ 147 (460)
..|.. ..+.+.|.
T Consensus 79 ~~g~~-~~~sv~l~ 91 (92)
T cd04977 79 AKGTE-SEATVNLK 91 (92)
T ss_pred CCCCc-ceeEEEEE
Confidence 87654 35555554
No 66
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.44 E-value=6.7e-13 Score=87.95 Aligned_cols=67 Identities=25% Similarity=0.455 Sum_probs=54.8
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
++|.|.+.|.|++ .+.|+|++..+. ..+.....++.|.|.++..+|+|.|+|.|.|..|....+..+
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 1 VEFQCEVGGDPVP-TVLWRKEDGELP---KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred CEEEEECccCCCC-EEEEEECCccCC---CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 4799999998876 799999987663 244555577889999999999999999999999987555444
No 67
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.44 E-value=1e-12 Score=92.20 Aligned_cols=75 Identities=25% Similarity=0.384 Sum_probs=59.0
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCc------cccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEP------YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
|+++.|.|.+.+.|.+ .+.|+|++..+.. ....++.+..++.|.|.+++.+|+|.|+|.|.|..|....++.+
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 6789999999998876 7999998865311 12345666667789999999999999999999999987655554
Q ss_pred EE
Q psy535 145 EV 146 (460)
Q Consensus 145 ~v 146 (460)
.|
T Consensus 80 ~V 81 (90)
T cd05726 80 EV 81 (90)
T ss_pred EE
Confidence 44
No 68
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.43 E-value=1e-12 Score=91.44 Aligned_cols=78 Identities=23% Similarity=0.349 Sum_probs=60.0
Q ss_pred eeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc-cEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535 66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK-DIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~ 143 (460)
..+.+|+.+.|.|.+.|.|.+ .+.|+|+|..+...... .+.. .....|.|.++..+|+|.|+|.|.|..|....+..
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 346789999999999998765 89999999988643221 1111 23447999999999999999999999998665544
Q ss_pred E
Q psy535 144 M 144 (460)
Q Consensus 144 ~ 144 (460)
+
T Consensus 83 l 83 (85)
T cd05857 83 L 83 (85)
T ss_pred E
Confidence 4
No 69
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.43 E-value=8.9e-13 Score=86.48 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=54.9
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
+.|.|.+.|.|+| .+.|+|++.++.... .++ ...+.+|.|.++..+|+|.|+|.|.+..........++|.
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~~-~~~-~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~ 71 (72)
T cd07702 1 YRLTPKVKAFPAP-EVIWLKDGLPAAEKC-SRY-HVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLI 71 (72)
T ss_pred CeEEeeEEEcCCC-eEEEEECCEECCCCC-cEE-EeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEE
Confidence 3689999999887 799999999886422 233 2345589999999999999999999986665555555554
No 70
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.43 E-value=2.1e-12 Score=93.65 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=66.5
Q ss_pred ecCCeeEEcceeeee----cceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--e-----cCeEEEeecC-C
Q psy535 54 EFPAKVTFTPTVQYL----PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--Q-----NGSLLFTRVN-Q 121 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~-----~~~l~i~~~~-~ 121 (460)
..+|.|...|....+ ..|..+.|.|.+.|.|++ .+.|+|+|..+... ..++... . .+.|.|.++. .
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p-~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~ 79 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV-QFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAA 79 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCC-EEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCcc
Confidence 345555544442222 235789999999998876 89999999988642 2233211 1 2469999987 5
Q ss_pred CCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
+|.|.|+|.|.|..|.. ...+.|.+..+|
T Consensus 80 ~D~G~Y~C~A~N~~G~~--~~~i~L~~~~~p 108 (109)
T cd05773 80 LDYALFTCTAHNSLGED--SLDIQLVSTSRP 108 (109)
T ss_pred CCCEEEEEEEEeCCccC--cEEEEEEecCCC
Confidence 89999999999999986 445666666665
No 71
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.43 E-value=1e-12 Score=89.26 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=57.8
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
|+++.|.|.+.|.|.| .++|++++..+.. ..++.+... +.|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVATGVPTP-IINWRLNWGHVPD--SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEEEEecCC-EEEEEECCeECCC--CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 6789999999999876 7999999887753 233333222 479999999999999999999999987665555443
No 72
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.42 E-value=1.8e-12 Score=90.77 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=55.4
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCC----eecCccccccEEEe----------ecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDK----RLLEPYQTKDIVVM----------QNGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~----~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
|++++|.|.+.|.|.| .|+|+|++ ..+.+......... ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 5789999999999876 79999963 33322122211111 224699999999999999999999999
Q ss_pred CcceeeEEEE
Q psy535 137 TQGSSGQMEV 146 (460)
Q Consensus 137 ~~~~~~~~~v 146 (460)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9877776655
No 73
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=3.2e-12 Score=89.35 Aligned_cols=86 Identities=23% Similarity=0.439 Sum_probs=69.9
Q ss_pred CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc
Q psy535 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
+.+...|... .+..|+.+.|.|.+ .|.|.|.+.|++++............++.|.|.++..+|+|.|.|.|.|..|
T Consensus 2 ~~~~~~p~~~-~~~~g~~v~l~C~~---~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 2 SIIVVFPKDT-YALKGQNVTLECFA---LGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CcEEECCCce-EEeCCCcEEEEEEe---eEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCC
Confidence 3444455554 57889999999998 7999999999997665555444455678899999999999999999999999
Q ss_pred eeeeeeEEEE
Q psy535 232 TIVQAAQLVV 241 (460)
Q Consensus 232 ~~~~~~~l~v 241 (460)
.......|.|
T Consensus 78 ~~~~~~~l~V 87 (88)
T cd04968 78 KDTHQGRIYV 87 (88)
T ss_pred cEEEEEEEEE
Confidence 9888877765
No 74
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.41 E-value=1.3e-12 Score=88.47 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=58.3
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
...|....+.+|+++.|.|.+.|.|.|..|+|+|+|.++... . ....+.|.|.++ .|+|.|+|.|.|..|...
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~---~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P---APSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C---CCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 456777888999999999999999877469999999988531 1 123457888877 478999999999999763
No 75
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.41 E-value=2e-12 Score=92.31 Aligned_cols=87 Identities=25% Similarity=0.305 Sum_probs=64.2
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc---cccEEEee---cCeEEEeecCCCCCeEEEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ---TKDIVVMQ---NGSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~---~~~l~i~~~~~~d~G~y~C 129 (460)
+|.+. .+....+.+|+++.|.|.+.|.|.+ .+.|++++..+.... ..++.+.. .+.|.|.+++.+|+|.|+|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 79 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDC 79 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEE
Confidence 45554 4456778889999999999998766 799999886654211 12233222 2379999999999999999
Q ss_pred EEEcCCCCcceeeEE
Q psy535 130 TPYNAHGTQGSSGQM 144 (460)
Q Consensus 130 ~~~~~~g~~~~~~~~ 144 (460)
.|.|..|....+..+
T Consensus 80 ~a~N~~G~~~~s~~l 94 (96)
T cd05732 80 EASNRIGGDQQSMYL 94 (96)
T ss_pred EEEeCCCCcEEEEEE
Confidence 999999987555443
No 76
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.41 E-value=1.7e-12 Score=86.29 Aligned_cols=72 Identities=24% Similarity=0.532 Sum_probs=61.2
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
|+.+.|.|.+ .|.|.|.+.|++++..+....++.+ .+++|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus 1 G~~~~l~C~~---~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKP---KAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEec---ceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999 7999999999996655555556665 4578999999999999999999999999988887754
No 77
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.40 E-value=2.2e-12 Score=84.78 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=52.0
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~ 143 (460)
|+++.|.|.+.|.|.| .|+|+|++.++... .+. ......|.|.++. |+|.|+|.|.|..|....++.
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~~--~~~-~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTKE--DEM-PVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEECCCc--cce-ecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEE
Confidence 5689999999999887 79999999887532 222 2234568888874 899999999999998655544
No 78
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.40 E-value=2.9e-12 Score=86.30 Aligned_cols=69 Identities=22% Similarity=0.479 Sum_probs=55.1
Q ss_pred eeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG 142 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~ 142 (460)
|+.+.|.|.+.|.|.+ .+.|++ ++..+.. ..+.....+++|.|.++..+|+|.|+|.|.|..|......
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05764 1 GQRATLRCKARGDPEP-AIHWISPDGKLISN--SSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATV 70 (74)
T ss_pred CCeEEEEEEccCcCCC-EEEEEeCCCEEecC--CCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence 6789999999998776 899997 5665542 2344556678999999999999999999999998764443
No 79
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.40 E-value=2.3e-12 Score=86.95 Aligned_cols=72 Identities=24% Similarity=0.495 Sum_probs=54.4
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCcc-ccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPY-QTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
++|.|.+.|.|.| .++|+|++....+. ...++... .++.|.|.+++.+|+|.|+|.|.|..|....+..+.|
T Consensus 1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999877 79999998653322 22333333 3468999999999999999999999998766555544
No 80
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.39 E-value=2.6e-12 Score=90.04 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=55.8
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeC----CeecCccccccEEEee----------cCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKD----KRLLEPYQTKDIVVMQ----------NGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~----~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
|+++.|.|.+.+.|.| .|+|+|+ +..+.+.......+.. .+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 5789999999999886 8999984 4444332222222111 14699999999999999999999999
Q ss_pred CcceeeEEEE
Q psy535 137 TQGSSGQMEV 146 (460)
Q Consensus 137 ~~~~~~~~~v 146 (460)
....++.+.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 8877766654
No 81
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.39 E-value=2.9e-12 Score=86.31 Aligned_cols=68 Identities=25% Similarity=0.398 Sum_probs=53.7
Q ss_pred eEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535 73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143 (460)
Q Consensus 73 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~ 143 (460)
.+.|.|.+.|.|.| .++|+|+|..+.. ..++.+.. .+.|.|.++..+|+|.|+|.|.|..|....+..
T Consensus 1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05748 1 SVRLEVPISGRPTP-TVTWSKDGKPLKL--SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71 (74)
T ss_pred CEEEEeeEeeeCCC-eEEEEECCEEcCC--CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence 36899999999887 7999999998853 23333322 347999999999999999999999998655443
No 82
>KOG3515|consensus
Probab=99.38 E-value=3.6e-11 Score=112.07 Aligned_cols=351 Identities=16% Similarity=0.161 Sum_probs=207.4
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEE-cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTF-TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR 96 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~ 96 (460)
.+........|.|.|+|.+.+..... .+..+.|.+..+|.+.. ........+++.....-.+.++|....+.|.+.+.
T Consensus 362 ~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~ 441 (741)
T KOG3515|consen 362 SHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLY 441 (741)
T ss_pred EeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecce
Confidence 56677888999999999999876442 24445556655554432 23333344444444444444777777899999999
Q ss_pred ecCccccccEEEeecCeE-EEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEee
Q psy535 97 LLEPYQTKDIVVMQNGSL-LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE 175 (460)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l-~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~ 175 (460)
++.......+.+...+-+ .+.++.+.|.|.|.|.++|..|... ..+.+.+...|.+....... ....++.+.+.|.
T Consensus 442 ~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~--~~~~~~~~~sp~~~~~~~~~-~~~~~ns~~~~~~ 518 (741)
T KOG3515|consen 442 KLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQ--AYLLLGVHTSPHNHHLQDQV-EGATGNSVDGECM 518 (741)
T ss_pred ecccccCceEEeeccccccccceeeeccCCcceeeeccCCCcee--eEEeeccccCCccccccccc-ccCCCCcccceee
Confidence 887766666666555543 3778999999999999999888754 34445555555544333333 4556777899999
Q ss_pred eeccCCCCCCeeEEEcCCCccCCcc-------cEEEecceEEEccccceeceEEEEEEecccce-eeeeeEEEEecCC--
Q psy535 176 AQEAEGTQKPTITWQRRDGVALPKN-------RVKIVGGNITIEGLRRVDFGYYECVVSNEVAT-IVQAAQLVVEGTQ-- 245 (460)
Q Consensus 176 ~~~~~~~p~~~~~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~-~~~~~~l~v~~~~-- 245 (460)
... .....--+.|.+.+ ...+.. .-....+.+.+........+.|.|.+.+ .+. ......+.+...+
T Consensus 519 q~~-~~~~~~m~~~~r~g-e~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~pA~~~~~l~~~s~~~v 595 (741)
T KOG3515|consen 519 QDE-QPQDQQMHHEPRSG-EPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG-SSPPAGLSLVLKAYSALIV 595 (741)
T ss_pred ccc-cccchhhhcccccC-CCCcccccccccccccCCccceeecccccccccceEEeecC-CCCccccceEEEecccccc
Confidence 731 12223367788743 333211 1112334566666666667899999998 333 2222333332211
Q ss_pred -CCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC---Ce-eeeec--cCCCCceEEEccCccCccEEEE
Q psy535 246 -PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DW-LPIPV--TPPGSTQITINRLTPATTYEFQ 318 (460)
Q Consensus 246 -p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~--~~~~~~~~~i~~l~~~~~~~~~ 318 (460)
+..|...........++..|. +.+.+.+. ..|-+..... .. ..... ........-+-+...+..|.+.
T Consensus 596 ~~~tp~~~~~~~g~v~as~~~~--a~~~~~~~---~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~~ 670 (741)
T KOG3515|consen 596 TVRTPNMYTAQEGCVNASDDCV--ASGVPSTS---FTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYENG 670 (741)
T ss_pred cccCCceeeeccCcccccccce--ecccccce---eecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcce
Confidence 111221122222224444442 22222221 2333222110 00 00000 0112233334455566777799
Q ss_pred EEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC
Q psy535 319 VVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS 384 (460)
Q Consensus 319 ~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~ 384 (460)
|.+.|.+|....+..+..- ..|..|.++.+.... ..+.|.|.+..+ ++..+.|.+.|...+.
T Consensus 671 c~t~n~lg~~~v~~~~~~~---t~~~~~~n~~~~~~~~~~i~l~~~p~fd-gg~~q~f~~~~~~~~~ 733 (741)
T KOG3515|consen 671 CTTQNLLGSDHVSGAIHSG---TASVGPINLTYDNLTYSTISLEWMPGFD-GGLQQRFFLKYYDLGT 733 (741)
T ss_pred eeecccCCCccccceecCC---cCCCCccceEeeeeeeeeeceeeeeccc-cccccceeeehhhcCC
Confidence 9999999988777666543 347889999987776 589999999988 6667889999987664
No 83
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.38 E-value=2.7e-12 Score=90.00 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=59.4
Q ss_pred eeeeecceeeEEEEEEEec-----CCCCCeEEEeeCCeecCcc--ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 64 TVQYLPFRLQGVVQCHIKA-----NPTFQYVTWTKDKRLLEPY--QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~-----~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
....+.+|+.+.|.|.+.+ .|.+ .|.|+|++..+... ...++. ..++.|.|.++..+|+|.|+|.+.|..|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMH-QQKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceee-ecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 3456778999999999988 4554 79999998764321 122332 2467899999999999999999999988
Q ss_pred CcceeeEE
Q psy535 137 TQGSSGQM 144 (460)
Q Consensus 137 ~~~~~~~~ 144 (460)
.......+
T Consensus 85 ~~~~~~~L 92 (94)
T cd05756 85 CMKVSISL 92 (94)
T ss_pred cEEEEEEE
Confidence 86554443
No 84
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.37 E-value=4.2e-12 Score=87.80 Aligned_cols=81 Identities=28% Similarity=0.567 Sum_probs=67.9
Q ss_pred CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeee
Q psy535 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 236 (460)
.|... .+..|+.+.|.|.+ .|.|.|.+.|++++.......++...++.|.|.++..+|.|.|+|.|.|..|....+
T Consensus 5 ~p~~~-~~~~G~~~~l~C~~---~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05728 5 VISDT-EADIGSSLRWECKA---SGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYAS 80 (85)
T ss_pred cCCcc-EEcCCCcEEEEEEe---eEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence 34444 67899999999999 799999999999665544455677778899999999999999999999999998888
Q ss_pred eEEEE
Q psy535 237 AQLVV 241 (460)
Q Consensus 237 ~~l~v 241 (460)
..|.|
T Consensus 81 ~~l~V 85 (85)
T cd05728 81 AELAV 85 (85)
T ss_pred EEEEC
Confidence 77653
No 85
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.37 E-value=4.7e-12 Score=84.57 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=51.2
Q ss_pred EEEEEEecCCCCCeEEEeeCCeecCccccccEE--E----eecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV--V----MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG 142 (460)
Q Consensus 75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~ 142 (460)
.+.|.+.|.|.| .|+|+|||.++......... . ...+.|.|.++..+|+|.|+|.|.|..|....+.
T Consensus 2 ~i~~~v~G~P~P-ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~ 74 (79)
T cd05855 2 CIPFTVKGNPKP-TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNV 74 (79)
T ss_pred eEEEEEeEeCCC-ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEE
Confidence 378999999987 79999999999643211111 1 1234799999999999999999999999865543
No 86
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.37 E-value=5.1e-12 Score=85.80 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=51.5
Q ss_pred EEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG 142 (460)
Q Consensus 75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~ 142 (460)
.+.|.+.|.|.| .|+|+|+|.++.+......... ..+.|.|.++..+|+|.|+|.|.|..|....+.
T Consensus 2 ~i~~~v~G~P~P-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 76 (81)
T cd04971 2 CIPFTVRGNPKP-TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI 76 (81)
T ss_pred eEEEEeEeeCCC-cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence 368999999887 7999999999975332111111 134699999999999999999999999865443
No 87
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.37 E-value=2.7e-12 Score=88.79 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=56.6
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
....|+++.|.|.+.+.|.+ .+.|++++..+..... .........|.|.++..+|+|.|+|.|.|..|.....
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 77 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRP-DITWLKDNKPLTPTEI-GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT 77 (82)
T ss_pred eccCCCeEEEEEEeeEeCCC-cEEEEECCcCCcCCcc-ceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence 45679999999999998876 6999999988754221 1112223579999999999999999999999875433
No 88
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.36 E-value=8.4e-12 Score=84.52 Aligned_cols=72 Identities=26% Similarity=0.508 Sum_probs=57.0
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC-eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG-SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
+.|.|.+.|.|++ .+.|+|++..+.+....++....++ .|.|.++..+|.|.|+|.+.|..|.......+.|
T Consensus 1 ~~L~C~v~g~P~p-~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLP-RLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCC-EEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 4689999998876 7999999998875444445544444 6999999999999999999999998765555444
No 89
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.35 E-value=5.5e-12 Score=85.28 Aligned_cols=64 Identities=27% Similarity=0.591 Sum_probs=51.1
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCC----CCCeEEEEEEEcCCCCc
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQ----NHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~----~d~G~y~C~~~~~~g~~ 138 (460)
++|.|.+.|.|.| .|+|+|++..+......++.. ..++.|.|.++.. +|+|.|+|.|.|..|..
T Consensus 1 i~l~C~~~G~P~P-~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCEAKGNPPP-TFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 4799999999876 799999999886544444443 3467899998754 78999999999999976
No 90
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.35 E-value=4.5e-12 Score=84.76 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=52.1
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
+.|.|.+.|.|.| .+.|+|++..+... ........+.|.|.++..+|+|.|+|.|.|..|.......+
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 1 LLLECIAEGLPTP-EISWIKIGGELPAD--RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCeECCCC--ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 4799999999876 79999998876431 12222334589999999999999999999999976544433
No 91
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.35 E-value=4.7e-12 Score=88.40 Aligned_cols=84 Identities=37% Similarity=0.650 Sum_probs=66.5
Q ss_pred CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535 344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422 (460)
Q Consensus 344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (460)
.+|.++.+.... +++.|+|+++...++.+.+|.|+|+..+.-. .|.... .....
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~------------------------~~~~~~-~~~~~ 55 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS------------------------DWQEVT-VPGNE 55 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSS------------------------EEEEEE-EETTS
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccce------------------------eeeeee-eeeee
Confidence 368899999876 6999999999877889999999999765300 111111 12345
Q ss_pred ceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535 423 TQITINRLTPATTYEFQVVGKNELGDGMLS 452 (460)
Q Consensus 423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s 452 (460)
..+.|.+|.|++.|.|+|+|+|..|.|++|
T Consensus 56 ~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~S 85 (85)
T PF00041_consen 56 TSYTITGLQPGTTYEFRVRAVNSDGEGPPS 85 (85)
T ss_dssp SEEEEESCCTTSEEEEEEEEEETTEEEEEE
T ss_pred eeeeeccCCCCCEEEEEEEEEeCCcCcCCC
Confidence 699999999999999999999999999876
No 92
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.35 E-value=7.2e-12 Score=85.45 Aligned_cols=72 Identities=26% Similarity=0.451 Sum_probs=54.0
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCcc------ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPY------QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
++|.|.+.|.|.| .+.|++++....+. ...++....+++|.|.++..+|+|.|+|.|.|..|.. .+..+.|.
T Consensus 1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGAD-ASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCC-CceEEEEe
Confidence 5799999999877 79999964322111 2345555667899999999999999999999999876 34444443
No 93
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.34 E-value=1e-11 Score=84.58 Aligned_cols=70 Identities=20% Similarity=0.427 Sum_probs=56.6
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
.|....+..|+++.|.|.+.+ +. +.|+|++||.++.... .++ ...++.|.|.+++.+|+|.|+|.+.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~-~~i~W~~ng~~i~~~~-~r~-~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NL-ARVVWKFDGKVLTPES-AKY-LLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CC-CeEEEEECCEECCCCC-ceE-EEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 466778889999999999864 44 4799999999987532 344 3456789999999999999999998753
No 94
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.33 E-value=1.2e-11 Score=83.43 Aligned_cols=65 Identities=25% Similarity=0.494 Sum_probs=50.2
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCC----CCCeEEEEEEEcCCCCcc
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQ----NHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~----~d~G~y~C~~~~~~g~~~ 139 (460)
+.|.|.+.|.|.| .|+|+|++.++......++.. ..+++|.|..+.. .|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05874 1 IVIQCEAKGKPPP-SFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV 70 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence 4799999999876 799999999875433334433 3467898887764 378999999999999763
No 95
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.33 E-value=7.8e-12 Score=83.99 Aligned_cols=73 Identities=33% Similarity=0.546 Sum_probs=59.3
Q ss_pred CCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
+|+.+.|.|.+ .|.|.|.+.|++++.......+... .++.|.|.++...|.|.|+|.|.|..|.......|.|
T Consensus 1 eG~~v~l~C~~---~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA---QGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC---CEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 48899999999 8999999999995543333333332 4568999999999999999999999999888877654
No 96
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.33 E-value=1.9e-11 Score=84.90 Aligned_cols=78 Identities=24% Similarity=0.463 Sum_probs=62.2
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEe--------cceEEEccccceeceEEEEEEecccceeeee
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIV--------GGNITIEGLRRVDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~--------~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 236 (460)
|+.++|.|.+ .|.|.+.+.|++++ ..+.. .++.+. ...|.|.++...|.|.|+|.|.|..|.....
T Consensus 1 g~~~~l~C~~---~g~p~~~i~W~k~~-~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~ 76 (88)
T cd05735 1 GQKKEMSCTA---HGEKPIIVRWEKED-RIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI 76 (88)
T ss_pred CCeEEEEEEE---ECCCCCEEEEeeCC-EECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE
Confidence 7889999999 78899999999954 34422 233322 1469999999999999999999999999999
Q ss_pred eEEEEecCCCCCC
Q psy535 237 AQLVVEGTQPHAP 249 (460)
Q Consensus 237 ~~l~v~~~~p~~p 249 (460)
..|.|.. +|.+|
T Consensus 77 ~~L~V~~-~P~~P 88 (88)
T cd05735 77 IQLTVQE-PPDPP 88 (88)
T ss_pred EEEEEeC-CCCCC
Confidence 9999986 45544
No 97
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.33 E-value=1.4e-11 Score=83.09 Aligned_cols=65 Identities=22% Similarity=0.495 Sum_probs=50.3
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecC----CCCCeEEEEEEEcCCCCcc
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVN----QNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~----~~d~G~y~C~~~~~~g~~~ 139 (460)
+.|.|.+.|.|.| .|+|+|++..+......++.. ..+++|.|..+. .+|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVP-TFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCC-EEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4799999999876 899999998764333444444 356789998764 2479999999999999763
No 98
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.32 E-value=1.4e-11 Score=86.83 Aligned_cols=85 Identities=27% Similarity=0.500 Sum_probs=68.9
Q ss_pred CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEE
Q psy535 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVV 226 (460)
Q Consensus 151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a 226 (460)
||.+...|... .+..|+.+.|.|.+ .|.|.|.+.|++++..+....++.+. .+.|.|.++...|.|.|+|.|
T Consensus 3 ~~~~~~~p~~~-~~~~G~~~~L~C~~---~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 3 PATILTKPRSL-TVSEGESARFSCDV---DGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCcccccCccE-EEeCCCcEEEEEEE---eecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 67777777665 78999999999999 89999999999965544444455443 247999999999999999999
Q ss_pred ecccceeeeeeEE
Q psy535 227 SNEVATIVQAAQL 239 (460)
Q Consensus 227 ~n~~g~~~~~~~l 239 (460)
.|..|.....+.|
T Consensus 79 ~N~~G~~~~~~~l 91 (92)
T cd05747 79 ENSEGKQEAQFTL 91 (92)
T ss_pred EcCCCCEeEEEEe
Confidence 9999998777655
No 99
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.31 E-value=2.8e-11 Score=85.06 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=59.8
Q ss_pred CeeEEcceeeeecc---eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCC-CCCeEEEEEEE
Q psy535 57 AKVTFTPTVQYLPF---RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ-NHQGRYTCTPY 132 (460)
Q Consensus 57 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~ 132 (460)
|.|...|....+.+ +..+.|.|.+.|.|.+ .++|++++..+......++. ..++.|.|.++.. +|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPP-TYRWLMNGTEIDDEPDSRYS-LVGGNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCC-EEEEEECCEECCCCCCCCEE-EECCEEEEecCCccCCCEEEEEEEE
Confidence 44555566555444 3579999999998766 89999999988533333433 4567899998874 89999999999
Q ss_pred cCCCCc
Q psy535 133 NAHGTQ 138 (460)
Q Consensus 133 ~~~g~~ 138 (460)
|..|..
T Consensus 80 N~~G~~ 85 (91)
T cd04967 80 NIVGTV 85 (91)
T ss_pred cCCCEE
Confidence 999865
No 100
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.31 E-value=1.7e-11 Score=81.42 Aligned_cols=70 Identities=31% Similarity=0.723 Sum_probs=58.1
Q ss_pred eEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 169 ~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
++.|.|.+ .|.|.|.+.|++++....+..+..+ ..+.+.|.++..+|.|.|+|.|.|..|....+..|.|
T Consensus 1 ~v~l~C~~---~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEV---TGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEE---EEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999 7999999999997665555555554 3557889999999999999999999999988887754
No 101
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.30 E-value=2.3e-11 Score=84.56 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=60.1
Q ss_pred eeeecceeeEEEEEEEecCC----CCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 65 VQYLPFRLQGVVQCHIKANP----TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
...+.+|.++.|.|...+.. +.+.+.|+|++.++.. ..+. ...++.|.|.++..+|+|.|+|.+.|..+....
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~--~~~~-~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG--DRKR-FVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC--CccE-EecCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 34577899999999875432 2347999999999863 2222 236778999999999999999999998877655
Q ss_pred eeEEEEE
Q psy535 141 SGQMEVL 147 (460)
Q Consensus 141 ~~~~~v~ 147 (460)
....++.
T Consensus 81 ~~t~t~~ 87 (92)
T cd05757 81 NVTRTIS 87 (92)
T ss_pred EEEEEEE
Confidence 5444444
No 102
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=1.9e-11 Score=84.21 Aligned_cols=73 Identities=25% Similarity=0.458 Sum_probs=53.6
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCe---ec--Cccc-cccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKR---LL--EPYQ-TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~---~~--~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
|+++.|.|.+.|.|.+ .++|+|++. .+ .+.. ..++.....+.|.|.++..+|+|.|+|.|.|..|.......|
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 6789999999998876 799999732 11 1111 123334455689999999999999999999999986554443
No 103
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.29 E-value=5e-11 Score=83.23 Aligned_cols=85 Identities=24% Similarity=0.461 Sum_probs=67.4
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-------CeEEEeecCCCC-CeEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-------GSLLFTRVNQNH-QGRY 127 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d-~G~y 127 (460)
||.+ .......+.+|++++|.|.+.+.|+|..|.|..++..+......++.+... +.|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 4544 455667788999999999999989888899999888776544456655442 369999998877 8999
Q ss_pred EEEEEcCCCCccee
Q psy535 128 TCTPYNAHGTQGSS 141 (460)
Q Consensus 128 ~C~~~~~~g~~~~~ 141 (460)
.|.|.|.+|.....
T Consensus 81 ~C~a~N~~G~d~~~ 94 (98)
T cd05898 81 NCTAWNSFGSGTAI 94 (98)
T ss_pred EEEEEeCCccceEE
Confidence 99999999987544
No 104
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.29 E-value=3.4e-11 Score=81.38 Aligned_cols=71 Identities=24% Similarity=0.558 Sum_probs=58.9
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc----ccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPK----NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
|+.+.|.|.+ .|.|.|.+.|++++ ..+.. .+....++.|.|.++...|+|.|.|.|.|..|.......|.|
T Consensus 1 G~~v~l~C~~---~G~P~p~i~W~k~g-~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV---EGIPTPNITWSING-APIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEe---eEeCCCeEEEEECC-EECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999998 79999999999954 34322 245556778999999999999999999999999888877765
No 105
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.29 E-value=2.1e-11 Score=81.33 Aligned_cols=69 Identities=25% Similarity=0.524 Sum_probs=54.9
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEe--c-c--eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIV--G-G--NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~--~-~--~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
+.|.|.+ .|.|.|.+.|++++..+.. ..++.+. + + +|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus 1 v~l~C~v---~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQI---SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEE---EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 4789999 8999999999995544332 3455442 1 2 6999999999999999999999999988877754
No 106
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.26 E-value=3.4e-11 Score=80.66 Aligned_cols=72 Identities=26% Similarity=0.507 Sum_probs=59.9
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-cceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
|+.+.|.|.+ .|.|.|.+.|++++..+....++... ++.|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus 1 G~~v~L~C~~---~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKP---KAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEee---eEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6789999998 78999999999966555444555543 467999999999999999999999999888887754
No 107
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.26 E-value=3.3e-11 Score=84.87 Aligned_cols=76 Identities=21% Similarity=0.403 Sum_probs=61.1
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-----cceEEEccccceeceEEEEEEecccceeeeee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-----GGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
.+..|+.+.|.|.+ .|.|.|.+.|++++.......++.+. ...|.|.++...|+|.|+|.|.|..|.....+
T Consensus 12 ~v~~G~~v~L~C~v---~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 12 TIMEGKTLNLTCTV---FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred EEeCCCcEEEEEEE---EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 67889999999999 79999999999965444333444332 12699999999999999999999999988777
Q ss_pred EEEE
Q psy535 238 QLVV 241 (460)
Q Consensus 238 ~l~v 241 (460)
.+.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 6653
No 108
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.26 E-value=2e-11 Score=83.55 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=58.4
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
.+....+.+|++++|.|.+.+..+...+.|+|+|..+... ...+.|.|.+++.+|+|.|+|.+.+..+.. .+
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~-~s 76 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY-SS 76 (83)
T ss_pred ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-------CCCceEEECccCHHHCEEEEEEEEeCCcee-cC
Confidence 3334568889999999998654444479999999876421 124579999999999999999999988754 45
Q ss_pred eEEEEE
Q psy535 142 GQMEVL 147 (460)
Q Consensus 142 ~~~~v~ 147 (460)
..+.|.
T Consensus 77 ~~~~i~ 82 (83)
T cd05753 77 EPVSIT 82 (83)
T ss_pred CCEEEE
Confidence 555554
No 109
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.26 E-value=4.6e-11 Score=82.46 Aligned_cols=76 Identities=28% Similarity=0.408 Sum_probs=61.7
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEe----cceEEEccccceeceEEEEEEecccceeeeee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
.+..|+.+.|.|.+ .|.|.|.+.|++++..+.. ..++... .+.|.|.++...|+|.|+|.|.|..|.....+
T Consensus 6 ~v~~G~~v~l~c~~---~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 6 VVVAGNKLRLDVPI---SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEcCCEEEEEeeE---eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 57789999999999 8999999999995543332 2345443 24799999999999999999999999988887
Q ss_pred EEEE
Q psy535 238 QLVV 241 (460)
Q Consensus 238 ~l~v 241 (460)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 7653
No 110
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.26 E-value=3.2e-11 Score=80.60 Aligned_cols=69 Identities=26% Similarity=0.523 Sum_probs=55.1
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEecc-----eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIVGG-----NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-----~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
+.|.|.+ .|.|.|.+.|++++..+.. ..++..... .|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 1 v~l~C~v---~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRV---SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEE---eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 4799999 8999999999996554432 234554322 5899999999999999999999999988877754
No 111
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.26 E-value=1.2e-10 Score=81.92 Aligned_cols=81 Identities=32% Similarity=0.534 Sum_probs=61.9
Q ss_pred CCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccC-C-cccEEEe-----cceEEEccccceeceEEEEEEec
Q psy535 157 KPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVAL-P-KNRVKIV-----GGNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~-~-~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n 228 (460)
.|... .+..|+.++|.|.+ .|.|. |.+.|++.++..+ . ..++... .++|.|.++...|.|.|+|.|.|
T Consensus 6 ~p~~~-~v~~G~~v~l~C~v---~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 6 VPSQG-EISVGESKFFLCQV---AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred eCCcc-EECCCCeEEEEEEE---eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence 34444 57889999999999 78885 7999998555443 3 3344332 24799999999999999999999
Q ss_pred cc-ceeeeeeEEEE
Q psy535 229 EV-ATIVQAAQLVV 241 (460)
Q Consensus 229 ~~-g~~~~~~~l~v 241 (460)
.. |....++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 96 88888877765
No 112
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.24 E-value=5.1e-11 Score=84.51 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=61.5
Q ss_pred ccCCCCeEEEEeeeeccCC-CCCCeeEEEcCCCccCC-cccEE-E--------ecceEEEccccceeceEEEEEEecccc
Q psy535 163 QRKVGESVDMHCEAQEAEG-TQKPTITWQRRDGVALP-KNRVK-I--------VGGNITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~-~p~~~~~W~~~~~~~~~-~~~~~-~--------~~~~l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
.+..|+.+.|.|.+ .| .|.|.+.|+++ +..+. ..... . ....|.|.++..+|+|.|+|.|.|..|
T Consensus 14 ~v~~G~~v~L~c~v---~g~~P~p~v~W~Kd-g~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 14 FVNLGENLNLVVEV---EAYPPPPHINWTYD-NRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred EEECCCCEEEEEEE---EecCCCCccEEEeC-CeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 67889999999999 78 89999999995 44444 22221 1 135799999999999999999999999
Q ss_pred eeeeeeEEEEe
Q psy535 232 TIVQAAQLVVE 242 (460)
Q Consensus 232 ~~~~~~~l~v~ 242 (460)
.....+.|.|.
T Consensus 90 ~~~~t~~L~V~ 100 (101)
T cd04975 90 SKSLTFELYVN 100 (101)
T ss_pred cEEEEEEEEEE
Confidence 98888888764
No 113
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.24 E-value=4e-11 Score=83.17 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=59.9
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
.|....+.+|++++|.|.+.+..+.+.+.|++++..+.. + ....++.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS----R-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC----c-ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 456667888999999999976434458999998876532 1 12345789999999999999999999999887665
Q ss_pred eE
Q psy535 142 GQ 143 (460)
Q Consensus 142 ~~ 143 (460)
+.
T Consensus 82 ~~ 83 (85)
T cd05754 82 AT 83 (85)
T ss_pred EE
Confidence 44
No 114
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.24 E-value=7.1e-11 Score=79.56 Aligned_cols=71 Identities=30% Similarity=0.550 Sum_probs=57.8
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc---c-cEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPK---N-RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~---~-~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
|+.+.|.|.+ .|.|.|.+.|+++ +..+.. . .....++.|.|.++...|.|.|+|.|.|..|...++..|.|
T Consensus 1 g~~~~l~C~a---~G~P~P~i~W~k~-g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRA---NGNPKPSISWLTN-GVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEe---eEeCCCeEEEEEC-CEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 6789999999 8999999999995 444421 1 22334557899999999999999999999999998888766
No 115
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.24 E-value=7e-11 Score=77.59 Aligned_cols=68 Identities=21% Similarity=0.445 Sum_probs=53.2
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
|+.++|.|.+ .|.|.|.+.|++++..+....+.......|.|.++. |.|.|+|.|.|..|....+..|
T Consensus 1 G~~v~L~C~a---~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVA---VGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEe---eecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 6789999999 899999999999655443333444444568888874 6899999999999998777654
No 116
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.24 E-value=3.7e-11 Score=81.27 Aligned_cols=68 Identities=15% Similarity=0.332 Sum_probs=49.6
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCcccc--ccEEEe---ecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQT--KDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
+.|.|.+.+.++.+.++|+++|..+..... .++... ..+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence 479999875444447999999998853221 222222 22469999999999999999999999876544
No 117
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.24 E-value=2.3e-10 Score=87.65 Aligned_cols=111 Identities=21% Similarity=0.366 Sum_probs=74.5
Q ss_pred eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEE
Q psy535 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQ 190 (460)
Q Consensus 113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~ 190 (460)
+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+.+.+... ....|..++|.|.+ .+ .|. +.+.|+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~--~~~~~l~v~~~P~v~~~~~~~-~~~~~~~~~L~C~a---~g~~P~~~~i~W~ 75 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA--QQIIQLSVSEPPRVRLSLEKL-VSMIEEPQTLICHI---AGYYPLDVQVEWT 75 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce--eeEEEEEEecCCceEEeCCCc-eeecCCcEEEEEEE---CCCCCCCeEEEEE
Confidence 58999999999999999998876664 455666777899988777654 33468889999999 55 454 489999
Q ss_pred cCCCccCC----cccE-----E-Eecc------eEEEccccceeceEEEEEEecc
Q psy535 191 RRDGVALP----KNRV-----K-IVGG------NITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 191 ~~~~~~~~----~~~~-----~-~~~~------~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
+++..... .... . ..++ .|.+..-...+...|.|.+.+.
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 96532110 0111 1 1122 3444433333456899998764
No 118
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.23 E-value=8.7e-11 Score=82.21 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=61.3
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc--cccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ--TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
+|....+.+|+++.|.|.+.+ |.+ .+.|++++..+.... ..++.. ..+.|.|.+++.+|+|.|+|.|.+..+. .
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~-~ 77 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSPADAGVYTCQSVEHGFK-Q 77 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEE-cCCCEEEccCCHHHCEEEEEEEecCccc-e
Confidence 355667888999999999876 554 799999998775432 123333 3456999999999999999999876543 3
Q ss_pred eeeEEEEEee
Q psy535 140 SSGQMEVLVR 149 (460)
Q Consensus 140 ~~~~~~v~v~ 149 (460)
....+.|.|.
T Consensus 78 ~~~~~~l~V~ 87 (89)
T cd04979 78 TLATYSLNVL 87 (89)
T ss_pred eEeEEEEEEe
Confidence 5556666653
No 119
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.23 E-value=7.7e-11 Score=78.00 Aligned_cols=68 Identities=37% Similarity=0.675 Sum_probs=55.0
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
++|.|.+ .|.|.|.+.|+++++. ++..+... .+..|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus 1 v~l~C~~---~g~P~p~v~W~k~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEV---GGDPVPTVLWRKEDGE-LPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEEC---ccCCCCEEEEEECCcc-CCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4789998 8999999999996543 34444443 4568999999999999999999999999887776653
No 120
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.23 E-value=1.4e-10 Score=81.26 Aligned_cols=75 Identities=35% Similarity=0.683 Sum_probs=61.6
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------CcccEEEe-cceEEEccccceeceEEEEEEecccceeeeee
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------PKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
|+.+.|.|.+ .+.|.|.+.|++++.... ...++... ++.|.|.++..+|.|.|.|.|.|..|......
T Consensus 1 G~~v~L~C~~---~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEA---TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEEC---CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 6789999998 899999999999655321 23344443 56899999999999999999999999999999
Q ss_pred EEEEecC
Q psy535 238 QLVVEGT 244 (460)
Q Consensus 238 ~l~v~~~ 244 (460)
.|.|...
T Consensus 78 ~l~V~~~ 84 (90)
T cd05726 78 YLEVTDV 84 (90)
T ss_pred EEEEeec
Confidence 9988764
No 121
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.23 E-value=4e-11 Score=82.88 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=55.6
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc-cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK-DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
....+.+|+.+.|.|....+.+.+.|.|++++.++....+. ++....+|.|.|.+++.+|+|.|+|.|.|..+.
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 33557789999999977554344589999998765322233 344444799999999999999999999987644
No 122
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.23 E-value=6.1e-11 Score=80.22 Aligned_cols=67 Identities=22% Similarity=0.448 Sum_probs=51.0
Q ss_pred EEEEEEEec-CCCCCeEEEeeCCeecCccccccEE-Ee---ecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 74 GVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIV-VM---QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 74 ~~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
+.|.|.+.+ .|.+ .+.|+|++.++......... .. ..+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 368999999 6665 89999999988643322211 11 23479999999999999999999999986544
No 123
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.22 E-value=5.6e-11 Score=78.78 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=55.5
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
+.|.|.+ .|.|.|.+.|++++..+....+......+|.|.++...|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~l~c~v---~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKV---KAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEE---EEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4689999 79999999999955444344444455678999999999999999999999998777766654
No 124
>KOG3515|consensus
Probab=99.22 E-value=2.4e-10 Score=106.66 Aligned_cols=318 Identities=15% Similarity=0.159 Sum_probs=174.7
Q ss_pred ceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec-CCCCCe
Q psy535 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA-NPTFQY 88 (460)
Q Consensus 10 ~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~ 88 (460)
+|+....+.+|.......+.-+.|.|++.|..+........+.|..+|.-...........+..+.+.|.+.. ..+...
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~n 130 (741)
T KOG3515|consen 51 GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPN 130 (741)
T ss_pred cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcc
Confidence 4444445557778888888889999999999777667778888888776443333444556778899995543 344457
Q ss_pred EEEeeCCeecCccccccEEE---------eecCeEEEeecCCCCCeEEEEEEEcCCCCcc-eeeEEEEEeeCCC--ceee
Q psy535 89 VTWTKDKRLLEPYQTKDIVV---------MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG-SSGQMEVLVRKPP--AFTI 156 (460)
Q Consensus 89 v~W~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~-~~~~~~v~v~~~p--~~~~ 156 (460)
+.|..+.............+ .....|.+...+.+|.|.|+|.|.+...... ....+.+.+..+. ....
T Consensus 131 lrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~ 210 (741)
T KOG3515|consen 131 LRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGIT 210 (741)
T ss_pred eeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceec
Confidence 99999876543222111100 2234588888899999999999988422111 2223333333322 2222
Q ss_pred CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecc------eEEEccccceeceEEEEEEeccc
Q psy535 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG------NITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
..........|+.+.|.|.+. .+.|.+.+.|++++.............+ .+.+..-.....-...|.+.| .
T Consensus 211 ~~~~~qsF~~g~~inlvc~~~--gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~ 287 (741)
T KOG3515|consen 211 GAQEQQSFTEGQTINLVCNAQ--GGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-L 287 (741)
T ss_pred chhhcCcccccceEEEEehhh--cCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-c
Confidence 233334678999999999774 8999999999985543332211111111 122222222233456799988 2
Q ss_pred ceeeeeeEEEEecCCCCCCCc--eeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eee--ec---cCCCCc
Q psy535 231 ATIVQAAQLVVEGTQPHAPYN--ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPI--PV---TPPGST 302 (460)
Q Consensus 231 g~~~~~~~l~v~~~~p~~p~~--~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~---~~~~~~ 302 (460)
+. .+..+.+...+...+.. ......+.+..+.|...... ++ ..+.|+++.....- ... .. ......
T Consensus 288 ~~--~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~-p~---~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~ 361 (741)
T KOG3515|consen 288 LA--ASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSK-PP---AHIAWYKDTKMPKGSQKASSKTSNMGGVAVI 361 (741)
T ss_pred cc--cceeeecccccccccccCcccccccccccccceeccCCC-Cc---cceeeeccCcccccccCcccCCCcccceeeE
Confidence 22 12222222211111111 11233445566666532222 22 22455553321100 000 00 001122
Q ss_pred eEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 303 ~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
.+.+......+.+.|.|.|-|..+....+..+.+
T Consensus 362 ~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l 395 (741)
T KOG3515|consen 362 SHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLL 395 (741)
T ss_pred EeeecccchhcCceEEccccccccccccccceec
Confidence 3445556677899999999988755444444433
No 125
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.22 E-value=9.4e-11 Score=79.50 Aligned_cols=72 Identities=31% Similarity=0.518 Sum_probs=58.4
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc---cEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
|+.+.|.|.+ .|.|.|.+.|++++....... ......+.|.|.++...|.|.|+|.|.|..|.......|.|
T Consensus 1 G~~~~l~C~~---~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA---EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEc---eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6889999998 799999999998554333222 23344678999999999999999999999999988887765
No 126
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.21 E-value=8.6e-11 Score=78.05 Aligned_cols=69 Identities=23% Similarity=0.434 Sum_probs=55.5
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCccc-EEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
+.|.|.+ .|.|.|.+.|++++........ ......+|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus 1 ~~L~C~~---~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIA---EGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEe---eEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4689999 8999999999996654433222 2224568999999999999999999999999888887765
No 127
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.21 E-value=1.8e-10 Score=81.91 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=62.0
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEe--cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
.+..|+.+.|.|.+ .|.|.|.+.|++++...... .+.... ...|.|.++...|.|.|+|.|.|..|.....+.|
T Consensus 14 ~~~~G~~v~L~C~~---~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 14 TANLGQSVTLACDA---DGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred EEeCCCCEEEEEec---cEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 57889999999999 79999999999954433222 233322 3469999999999999999999999999888888
Q ss_pred EEe
Q psy535 240 VVE 242 (460)
Q Consensus 240 ~v~ 242 (460)
.|.
T Consensus 91 ~V~ 93 (95)
T cd05730 91 KVF 93 (95)
T ss_pred EEE
Confidence 775
No 128
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.21 E-value=7.5e-11 Score=76.24 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=52.6
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
++|.|.+ .|.|.|.+.|++ ++..+... .....|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 1 ~~l~c~v---~g~P~P~v~W~k-dg~~l~~~---~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKV---AAYPPPEFQWYK-DGKLISGK---HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEE---EEeCCCEEEEEE-CCEECccc---CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 4789999 899999999999 45455321 23568999999999999999999999997777666654
No 129
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.21 E-value=5.9e-11 Score=78.41 Aligned_cols=67 Identities=30% Similarity=0.562 Sum_probs=54.8
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
+.|.|.+ .|.|.|.+.|++++..+....++.+. ++.|.|.++...|.|.|+|.|.|..|....+..|
T Consensus 1 v~L~C~~---~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSA---QGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecc---eEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4789998 79999999999955444444455543 6689999999999999999999999998877665
No 130
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.21 E-value=1.7e-10 Score=78.48 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=59.3
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~ 240 (460)
.+..|+.+.|.|.+ .+. .+.+.|++++..+....+....+..|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus 5 ~~~~G~~v~l~C~~---~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 5 SAHPGDLLQLRCRL---RDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred EecCCCCEEEEEEe---cCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 57789999999998 554 568999996544444456666777899999999999999999999988876665554
No 131
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.21 E-value=7.1e-11 Score=81.62 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=54.1
Q ss_pred eeeEEEEEEEecCC-CCCeEEEeeCCeecCccccc--cEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535 71 RLQGVVQCHIKANP-TFQYVTWTKDKRLLEPYQTK--DIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143 (460)
Q Consensus 71 g~~~~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~--~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~ 143 (460)
|+++.|.|.+.+.+ +++.++|++++..+...... +.. ....+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 67899999999983 33479999987654321100 000 112347999999999999999999999988766665
Q ss_pred EEE
Q psy535 144 MEV 146 (460)
Q Consensus 144 ~~v 146 (460)
+.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 543
No 132
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.20 E-value=1.1e-10 Score=81.67 Aligned_cols=69 Identities=13% Similarity=0.308 Sum_probs=51.8
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCc------cccccEEEee----cCeEEEeecCCCCCeEEEEEEEc
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP------YQTKDIVVMQ----NGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+.. ....++.+.. +.+|.|.++..+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 45678899999999999998765 7999998764311 0123333221 34799999999999999999976
No 133
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.20 E-value=1.8e-10 Score=83.56 Aligned_cols=91 Identities=20% Similarity=0.375 Sum_probs=66.4
Q ss_pred eCCCceeeCCCccccc---CCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEE--------ecceEEEcccc
Q psy535 149 RKPPAFTIKPEAMYQR---KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKI--------VGGNITIEGLR 215 (460)
Q Consensus 149 ~~~p~~~~~~~~~~~~---~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~--------~~~~l~i~~~~ 215 (460)
.++|.+...|.....+ ..|..++|.|.+ .|.|.+.+.|++++ ..+. ..++.. ..+.|.|.++.
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a---~G~P~p~i~W~k~g-~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~ 77 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQA---QGVPRVQFRWAKNG-VPLDLGNPRYEETTEHTGTVHTSILTIINVS 77 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEEC---cccCCCEEEEEECC-EECCCCCCeEEEEeeccCccceeEEEECcCC
Confidence 3466666555532222 356899999999 79999999999954 4443 223321 13468999987
Q ss_pred -ceeceEEEEEEecccceeeeeeEEEEec
Q psy535 216 -RVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 216 -~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
..|.|.|+|.|.|..|.....+.|.+..
T Consensus 78 ~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~ 106 (109)
T cd05773 78 AALDYALFTCTAHNSLGEDSLDIQLVSTS 106 (109)
T ss_pred ccCCCEEEEEEEEeCCccCcEEEEEEecC
Confidence 5899999999999999998888888764
No 134
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.19 E-value=1.8e-10 Score=80.77 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=60.6
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE----ecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
.+..|+.+.|.|.+ .|.|.|.+.|++++........... ....|.|.++...|.|.|+|.|.|..|.....+.
T Consensus 11 ~v~~G~~v~l~C~~---~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~ 87 (90)
T cd04972 11 VVYEGGTATIRCTA---EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQ 87 (90)
T ss_pred EEcCCCcEEEEEEE---EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence 57899999999999 7999999999996544333222111 2347999999999999999999999999888877
Q ss_pred EEE
Q psy535 239 LVV 241 (460)
Q Consensus 239 l~v 241 (460)
|.|
T Consensus 88 L~v 90 (90)
T cd04972 88 VTV 90 (90)
T ss_pred EeC
Confidence 653
No 135
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.19 E-value=1.3e-10 Score=82.56 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=61.6
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE----------ecceEEEccccceeceEEEEEEecccce
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI----------VGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
.+..|+.+.|.|.+ .|.|.|.+.|++++..+....+... ...+|.|.++..+|+|.|+|.|.|..|.
T Consensus 14 ~~~~~~~~~l~~~v---~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 14 FANLHEVKEFVVEV---EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred EEecCCcEEEEEEE---EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 67789999999999 8999999999995443333322211 1247999999999999999999999999
Q ss_pred eeeeeEEEEe
Q psy535 233 IVQAAQLVVE 242 (460)
Q Consensus 233 ~~~~~~l~v~ 242 (460)
...++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9888887764
No 136
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.19 E-value=1.3e-10 Score=81.90 Aligned_cols=85 Identities=35% Similarity=0.612 Sum_probs=67.1
Q ss_pred ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEec
Q psy535 153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n 228 (460)
.+...+... .+..|+.+.|.|.+ .+.|.+.+.|++++..+....+.... ...|.|.++...|.|.|+|.+.|
T Consensus 2 ~~~~~~~~~-~v~~G~~~~l~c~~---~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 2 VFTKKPKDV-TVKEGESVTLECEV---SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEESSEE-EEETTSEEEEEEEE---EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred EEEEecCCE-EEeCCCEEEEEEEE---EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 344455444 78899999999999 67799999999965444444455443 34699999999999999999999
Q ss_pred ccceeeeeeEEEE
Q psy535 229 EVATIVQAAQLVV 241 (460)
Q Consensus 229 ~~g~~~~~~~l~v 241 (460)
..|.....+.|.|
T Consensus 78 ~~g~~~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEATASVNLTV 90 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEC
Confidence 9999888887764
No 137
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.19 E-value=1.1e-10 Score=76.52 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=52.7
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
+.|.|.+ .|.|.|.+.|++++. .+........+..|.|.++...|.|.|+|.|.|..|.......+.+
T Consensus 1 ~~~~c~v---~G~P~P~v~W~k~g~-~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKY---YGYPPPEVKWYKNGQ-LIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEE---EEeCCCEEEEEECCE-ECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 3688999 899999999999544 4433322223457999999999999999999999997766665544
No 138
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.18 E-value=2.5e-10 Score=78.50 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=54.3
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccc--cEEE---eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK--DIVV---MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
|++++|.|.+.+.|.+ .+.|+++++........ +... .....|.|.+++.+|+|.|+|.|.|..+....+..+.
T Consensus 1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 6789999999997765 79999877543211000 1111 1134799999999999999999998766444566666
Q ss_pred EEee
Q psy535 146 VLVR 149 (460)
Q Consensus 146 v~v~ 149 (460)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 6653
No 139
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.17 E-value=1.9e-10 Score=77.15 Aligned_cols=69 Identities=23% Similarity=0.494 Sum_probs=54.0
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEe-c--c--eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIV-G--G--NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~-~--~--~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
++|.|.+ .|.|.|.+.|++++..+.. ..++.+. . + .|.|.++...|.|.|+|.|.|..|.......|.|
T Consensus 1 v~L~C~v---~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRV---SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEE---eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 4799999 8999999999995543332 2344432 1 1 5999999999999999999999999888877653
No 140
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.17 E-value=2.3e-10 Score=77.00 Aligned_cols=70 Identities=24% Similarity=0.385 Sum_probs=56.5
Q ss_pred eEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 169 ~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
.+.|.|.+ .|.|.|.+.|++++..+....+..+. ...|.|.++...|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~---~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPI---SGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeE---eeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999 89999999999965544344444443 346999999999999999999999999888877654
No 141
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.16 E-value=2.8e-10 Score=79.07 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=59.8
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE---EE--ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV---KI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~---~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
.+..|+.+.|.|.+ .|.|.|.+.|++++..+....+. .. ....|.|.++...|+|.|+|.|.|..|....++
T Consensus 5 ~v~~G~~~~L~C~~---~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05857 5 AVPAANTVKFRCPA---AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 81 (85)
T ss_pred EcCCCCEEEEEEEc---CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence 57789999999998 78899999999955443332221 11 234688999999999999999999999988887
Q ss_pred EEEE
Q psy535 238 QLVV 241 (460)
Q Consensus 238 ~l~v 241 (460)
.|.|
T Consensus 82 ~l~v 85 (85)
T cd05857 82 HLDV 85 (85)
T ss_pred EEEC
Confidence 7654
No 142
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.16 E-value=5.5e-10 Score=78.66 Aligned_cols=67 Identities=28% Similarity=0.549 Sum_probs=53.1
Q ss_pred CCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEecceEEEcccc-ceeceEEEEEEecccceeee
Q psy535 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIVGGNITIEGLR-RVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~ 235 (460)
.|+.+.|.|.+ .|.|.|.+.|++++..+... .++...++.|.|.++. ..|.|.|+|.|.|..|...+
T Consensus 18 ~g~~v~l~C~~---~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEA---RGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEe---eecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 47899999999 89999999999955433222 2445567789998875 68999999999999998643
No 143
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.16 E-value=4e-10 Score=80.22 Aligned_cols=87 Identities=24% Similarity=0.420 Sum_probs=63.4
Q ss_pred CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-----ccEEEe----cceEEEccccceeceE
Q psy535 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-----NRVKIV----GGNITIEGLRRVDFGY 221 (460)
Q Consensus 151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-----~~~~~~----~~~l~i~~~~~~~~g~ 221 (460)
.|.+...+... .+..|+.++|.|.+ .|.|.|.+.|++++...... .++... .+.|.|.++...|.|.
T Consensus 2 ~p~i~~~~~~~-~~~~g~~v~l~C~~---~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~ 77 (97)
T cd05869 2 KPKITYVENQT-AMELEEQITLTCEA---SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGE 77 (97)
T ss_pred CceEEEccCce-EEEcCCCEEEEEEe---eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEE
Confidence 35555455443 34568999999999 79999999999954322211 122222 2479999999999999
Q ss_pred EEEEEecccceeeeeeEEEE
Q psy535 222 YECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 222 y~C~a~n~~g~~~~~~~l~v 241 (460)
|+|.|.|..|....++.|.|
T Consensus 78 Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 78 YLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEecCCCCeeEEEEEEC
Confidence 99999999999888877653
No 144
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.16 E-value=3.5e-10 Score=80.70 Aligned_cols=75 Identities=23% Similarity=0.511 Sum_probs=59.4
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCC-CccCC------cccEEEe----cceEEEccccceeceEEEEEEecccc
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRD-GVALP------KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~-~~~~~------~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
.+..|+.++|.|.+ .|.|.|.+.|++.+ +..+. ..++... ...|.|.++..+|.|.|.|.|.|..|
T Consensus 12 ~~~~G~~v~l~C~~---~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 12 TTVENGAATLSCKA---EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred EEcCCCcEEEEEec---ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 67899999999998 79999999999843 22221 2244432 24799999999999999999999999
Q ss_pred eeeeeeEEE
Q psy535 232 TIVQAAQLV 240 (460)
Q Consensus 232 ~~~~~~~l~ 240 (460)
....++.|.
T Consensus 89 ~~~~~~~l~ 97 (98)
T cd05870 89 GHQKSMYLD 97 (98)
T ss_pred cceeEEEEe
Confidence 988777664
No 145
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.16 E-value=4.2e-10 Score=77.46 Aligned_cols=72 Identities=25% Similarity=0.462 Sum_probs=57.0
Q ss_pred CeEEEEeeeeccCCCCCC--eeEEEcCCCccCCc----ccE---EE--ecceEEEccccceeceEEEEEEecccceeeee
Q psy535 168 ESVDMHCEAQEAEGTQKP--TITWQRRDGVALPK----NRV---KI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 168 ~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~----~~~---~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 236 (460)
++++|.|.+ .|.|.| .+.|++++ ..+.. .++ .. ..+.|.|.+++..|+|.|+|.|.|..|...++
T Consensus 1 ~~~~L~C~a---~g~P~p~~~v~W~~~g-~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHA---SHDPTMDLTFTWSLDD-FPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEE---ecCCCCCeEEEEEECC-eEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 468999999 788877 68999954 33321 122 11 24689999999999999999999999999999
Q ss_pred eEEEEec
Q psy535 237 AQLVVEG 243 (460)
Q Consensus 237 ~~l~v~~ 243 (460)
..|.|.+
T Consensus 77 ~~L~V~~ 83 (85)
T cd05854 77 ATLVVRG 83 (85)
T ss_pred EEEEEEC
Confidence 9999986
No 146
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.15 E-value=4e-10 Score=75.82 Aligned_cols=72 Identities=25% Similarity=0.518 Sum_probs=57.6
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEE-EecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVK-IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~-~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
|+.+.|.|.+ .|.|.|.+.|++.++..+.. .+.. ...++|.|..+...|.|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~---~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKA---RGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEc---cCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999998 78999999999755555433 2222 24568999999999999999999999999877776653
No 147
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.15 E-value=3.8e-10 Score=81.45 Aligned_cols=87 Identities=28% Similarity=0.544 Sum_probs=59.8
Q ss_pred CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-----cc-cEEEecceEEEc-----cccceec
Q psy535 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-----KN-RVKIVGGNITIE-----GLRRVDF 219 (460)
Q Consensus 151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-----~~-~~~~~~~~l~i~-----~~~~~~~ 219 (460)
||.+...|... .+..|+.+.|.|.+ .|.|.|.+.|++++..+.. .. .....++.+.+. .+...|.
T Consensus 1 ~P~i~~~p~~~-~v~~G~~~~l~C~~---~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~ 76 (100)
T cd07693 1 PPRIVEHPSDL-IVSKGDPATLNCKA---EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDE 76 (100)
T ss_pred CCeEEecCcee-EEcCCCeEEEEeeC---CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcC
Confidence 46666667665 68899999999998 7999999999995543322 11 112223333222 2368899
Q ss_pred eEEEEEEecccce-eeeeeEEEE
Q psy535 220 GYYECVVSNEVAT-IVQAAQLVV 241 (460)
Q Consensus 220 g~y~C~a~n~~g~-~~~~~~l~v 241 (460)
|.|+|.|.|..|. .+....|.|
T Consensus 77 G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 77 GVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEEEccccceecceEEEEe
Confidence 9999999999998 455555544
No 148
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.14 E-value=4.2e-10 Score=76.44 Aligned_cols=75 Identities=23% Similarity=0.468 Sum_probs=58.4
Q ss_pred CeEEEEeeeeccCCCCCCeeEEEcCCCccCC----cccEEE-----ecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535 168 ESVDMHCEAQEAEGTQKPTITWQRRDGVALP----KNRVKI-----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 168 ~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~----~~~~~~-----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
+.+.|.|.+.. .+.+.+.+.|++++ ..+. ..++.. ..+.|.|.+++..|+|.|+|.|.|..+...++..
T Consensus 1 ~~~~l~C~v~~-d~~l~~~~~W~~dg-~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSH-DHSLDIVFTWSFNG-HLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEecc-CCCCCcEEEEEECC-EECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 36889999842 14567899999954 4443 123433 3457999999999999999999999999999999
Q ss_pred EEEecC
Q psy535 239 LVVEGT 244 (460)
Q Consensus 239 l~v~~~ 244 (460)
|.|.++
T Consensus 79 L~V~~p 84 (85)
T cd05853 79 LIVRGP 84 (85)
T ss_pred EEEecC
Confidence 999864
No 149
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.14 E-value=3.7e-10 Score=79.27 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=61.4
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--ec---ceEEEccccceeceEEEEEEecccceeeeee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--VG---GNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~---~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
.+..|+.+.|.|.+ .+.|.|.+.|++++.......++.. .. .+|.|.++..+|.|.|+|.|.|..|....++
T Consensus 12 ~v~eG~~v~L~C~v---~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05891 12 TIMEGKTLNLTCTV---FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV 88 (92)
T ss_pred EEcCCCEEEEEEEE---EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence 67899999999998 7889999999996655444333332 22 2689999999999999999999999988887
Q ss_pred EEEE
Q psy535 238 QLVV 241 (460)
Q Consensus 238 ~l~v 241 (460)
.+.|
T Consensus 89 ~v~~ 92 (92)
T cd05891 89 TVSV 92 (92)
T ss_pred EEEC
Confidence 7654
No 150
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.13 E-value=9.6e-10 Score=76.69 Aligned_cols=74 Identities=30% Similarity=0.507 Sum_probs=58.3
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cceEEEccccceeceEEEEEEecccceeee-eeEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQ-AAQL 239 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~-~~~l 239 (460)
.+..|+.++|.|.+ .|. .|.+.|++++. .+...++... +..|.|.++..+|.|.|+|.|.|..|...+ .+.|
T Consensus 14 ~v~~g~~v~l~C~a---~g~-~p~i~W~kng~-~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 14 PPEDNQPVTLTCEA---EGQ-ATYIWWVNNGS-LLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred ccccCCcEEEEEEe---CCC-CCEEEEEECCE-ECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 67899999999999 788 99999999544 4444444443 458999999999999999999999997543 4455
Q ss_pred EE
Q psy535 240 VV 241 (460)
Q Consensus 240 ~v 241 (460)
.|
T Consensus 89 ~V 90 (91)
T cd05740 89 NV 90 (91)
T ss_pred Ee
Confidence 44
No 151
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.13 E-value=4.5e-10 Score=76.25 Aligned_cols=70 Identities=30% Similarity=0.525 Sum_probs=55.7
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
|+.+.|.|.+ .|.|.|.+.|+++++......++... ...|.|.++..+|.|.|+|.|.|..|.......+
T Consensus 1 G~~v~l~C~~---~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 1 GETVEFTCVA---TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCEEEEEEEE---EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 6789999999 79999999999865544444444432 2479999999999999999999999987655544
No 152
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.13 E-value=5.8e-10 Score=78.14 Aligned_cols=66 Identities=27% Similarity=0.503 Sum_probs=53.2
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccC-CcccEEEecceEEEcccc-ceeceEEEEEEecccceeee
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGNITIEGLR-RVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~ 235 (460)
+..+.|.|.+ .|.|.|.+.|++++.... ...+....++.|.|.++. ..|.|.|.|.|.|..|...+
T Consensus 19 ~~~v~l~C~a---~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 19 EGKVSVNCRA---RANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCeEEEeCcC---ccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 5579999999 899999999999554332 234566667899999885 68999999999999998643
No 153
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.11 E-value=2.6e-10 Score=78.70 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=60.1
Q ss_pred ceeeeecceeeEEEEEE-EecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCe-EEEEEEEcCCC
Q psy535 63 PTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG-RYTCTPYNAHG 136 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~g 136 (460)
.....+.+|+++.|.|. ..|.|.+ .|.|++++..... ...|+.+..+|.|.|.++..+|+| .|.|.|.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHIT-QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCcccc-ccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 45677889999999997 5787776 8999998766443 467888888899999999999999 79999998753
No 154
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.11 E-value=1.1e-09 Score=77.12 Aligned_cols=67 Identities=28% Similarity=0.545 Sum_probs=52.6
Q ss_pred CCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--CcccEEEecceEEEcccc-ceeceEEEEEEecccceeee
Q psy535 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--PKNRVKIVGGNITIEGLR-RVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~ 235 (460)
.|+.++|.|.+ .|.|.|.+.|++++..+. ...++...++.|.|.++. ..|.|.|+|.|.|..|...+
T Consensus 18 ~g~~v~l~C~a---~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 18 PEEKVTLGCRA---RASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCCeEEEEeEc---eeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 35789999999 799999999999554332 133555667889998765 58999999999999998644
No 155
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.11 E-value=7.6e-10 Score=77.01 Aligned_cols=74 Identities=27% Similarity=0.448 Sum_probs=57.6
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC-CcccEEEe-cc---eEEEccccceeceEEEEEEeccccee-eee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV-GG---NITIEGLRRVDFGYYECVVSNEVATI-VQA 236 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-~~~~~~~~-~~---~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~ 236 (460)
.+..|+.+.|.|.+ .|.|. .+.|++.++..+ ...++... ++ .|.|.++..+|+|.|+|.|.|..|.. ..+
T Consensus 11 ~v~~G~~v~l~C~~---~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 86 (92)
T cd05866 11 ELSVGESKFFTCTA---IGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86 (92)
T ss_pred EEcCCCeEEEEEEE---EEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence 67889999999999 78887 899998555443 34455543 22 79999999999999999999999985 444
Q ss_pred eEEE
Q psy535 237 AQLV 240 (460)
Q Consensus 237 ~~l~ 240 (460)
+.|.
T Consensus 87 i~l~ 90 (92)
T cd05866 87 VVLE 90 (92)
T ss_pred EEEE
Confidence 4443
No 156
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.11 E-value=6.1e-10 Score=75.07 Aligned_cols=69 Identities=29% Similarity=0.605 Sum_probs=54.8
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCC---cccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALP---KNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~---~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
++|.|.+ .|.|.|.+.|++++....+ ..++.. .++.|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus 1 a~l~C~~---~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAA---TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeec---ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4689998 8999999999996653322 223333 3457999999999999999999999999888887766
No 157
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.10 E-value=8.4e-10 Score=76.84 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=54.7
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEE--EeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV--VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
.+..|+++.|.|.+.+.|.+ .+.|++++..+......... ......|.|.++..+|+|.|.|.+.|..|....+
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~ 80 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRP-TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT 80 (85)
T ss_pred EecCCCcEEEEEEcCCCCCC-eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence 45679999999999988765 79999999887532111110 1112369999999999999999999988875443
No 158
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.10 E-value=5.6e-10 Score=77.09 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=58.3
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~ 240 (460)
.+..|+.+.|.|.+ .+.|.|.+.|++++........... ....|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus 5 ~~~~G~~v~L~C~~---~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVA---SGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEe---eEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 45679999999998 7889999999996554433222222 234799999999999999999999999877776654
No 159
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.10 E-value=8.5e-10 Score=77.68 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=54.9
Q ss_pred ceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC------ccccccEEEe----ecCeEEEeecCCCCCeEEEEEEE
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE------PYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
+.+..+.+|+++.|.|.+.+.|.+ .+.|++.+..+. .....++... ...+|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 456778899999999999988765 799987432110 0123444432 22479999999999999999998
Q ss_pred cCCCCcceeeEE
Q psy535 133 NAHGTQGSSGQM 144 (460)
Q Consensus 133 ~~~g~~~~~~~~ 144 (460)
+..+. ...+.+
T Consensus 83 t~~~~-~~~~~l 93 (95)
T cd07701 83 TMPVK-TSKAYL 93 (95)
T ss_pred eecCc-cEEEEE
Confidence 74333 344443
No 160
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.09 E-value=9.5e-10 Score=78.41 Aligned_cols=76 Identities=29% Similarity=0.468 Sum_probs=59.2
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-----cccEEEe----cceEEEccccceeceEEEEEEeccccee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-----KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-----~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.+..|+.+.|.|.+ .|.|.|.+.|++++..... ..++... ...|.|.++...|.|.|.|.|.|..|..
T Consensus 12 ~~~~g~~v~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (96)
T cd05732 12 TAVELEQITLTCEA---EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD 88 (96)
T ss_pred eEecCCcEEEEEEE---eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence 57889999999999 7899999999995532221 1223222 2479999999999999999999999998
Q ss_pred eeeeEEEE
Q psy535 234 VQAAQLVV 241 (460)
Q Consensus 234 ~~~~~l~v 241 (460)
..++.|.|
T Consensus 89 ~~s~~l~v 96 (96)
T cd05732 89 QQSMYLEV 96 (96)
T ss_pred EEEEEEeC
Confidence 87776653
No 161
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.09 E-value=1.1e-09 Score=72.88 Aligned_cols=65 Identities=11% Similarity=0.204 Sum_probs=49.8
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCcccc---ccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQT---KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
++|+|.+.+..|++.|+||+|+.++..... ........++|.|.....+|.+.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999988777779999999999864221 11112234569999999999999999999987654
No 162
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.08 E-value=5.9e-10 Score=74.42 Aligned_cols=68 Identities=26% Similarity=0.502 Sum_probs=54.3
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE--EecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK--IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
+.|.|.+ .|.|.|.+.|+++++... ..+.. .....|.|.++...|.|.|+|.|.|..|.....+.+.|
T Consensus 1 v~l~C~~---~g~P~p~v~W~k~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIA---EGLPTPEISWIKIGGELP-ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEe---eEecCCeEEEEECCeECC-CCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4789999 799999999999655433 22222 23458999999999999999999999999888877765
No 163
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.08 E-value=6.4e-10 Score=75.15 Aligned_cols=67 Identities=19% Similarity=0.441 Sum_probs=50.3
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcc-cEEEe--cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
++|.|.+ .|.|.|.+.|++++..+.... +.... ...|.|.++..+|.|.|.|.|.|..|....+..+
T Consensus 1 v~L~C~~---~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 70 (77)
T cd05760 1 VTLRCHI---DGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNF 70 (77)
T ss_pred CEEEEEe---eecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceE
Confidence 5799998 799999999999554332222 22332 3579999999999999999999999986544333
No 164
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.07 E-value=8.3e-10 Score=77.40 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=60.2
Q ss_pred ccCCCCeEEEEeeeeccCC-----CCCCeeEEEcCCCccC----CcccEEEecceEEEccccceeceEEEEEEeccccee
Q psy535 163 QRKVGESVDMHCEAQEAEG-----TQKPTITWQRRDGVAL----PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~-----~p~~~~~W~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.+..|+.+.|.|.+ .+ .|.+.+.|++++.... ...++...++.|.|.++..+|+|.|.|.+.|..|..
T Consensus 10 ~v~~G~~~~L~C~~---~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 10 YVLEGEPVVIKCPL---FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EEecCCCeEEECCC---CCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 46789999999998 56 6888999999664322 123444456789999999999999999999999998
Q ss_pred eeeeEEEE
Q psy535 234 VQAAQLVV 241 (460)
Q Consensus 234 ~~~~~l~v 241 (460)
...+.|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 87776653
No 165
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.07 E-value=8.2e-10 Score=76.48 Aligned_cols=73 Identities=26% Similarity=0.482 Sum_probs=56.7
Q ss_pred CeEEEEeeeeccCCCCCC--eeEEEcCCCccCCcc----cE-----EEecceEEEccccceeceEEEEEEecccceeeee
Q psy535 168 ESVDMHCEAQEAEGTQKP--TITWQRRDGVALPKN----RV-----KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 168 ~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~~----~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 236 (460)
+.+.|.|.+ .+.|.| .+.|++++ ..+... .+ ....+.|.|.+++..|+|.|+|.|.|..|....+
T Consensus 1 e~~~L~C~~---~g~P~p~i~~~W~~~g-~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 76 (85)
T cd04970 1 ESITLQCHA---SHDPTLDLTFTWSFNG-VPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS 76 (85)
T ss_pred CcEEEEEEE---ecCCCCCeEEEEEECC-eEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence 468999999 788877 67999854 443211 11 1135679999999999999999999999999999
Q ss_pred eEEEEecC
Q psy535 237 AQLVVEGT 244 (460)
Q Consensus 237 ~~l~v~~~ 244 (460)
..|.|.++
T Consensus 77 ~~l~V~~p 84 (85)
T cd04970 77 ADLIVRGP 84 (85)
T ss_pred EEEEEECC
Confidence 99999863
No 166
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.07 E-value=7.9e-10 Score=75.04 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=50.9
Q ss_pred EEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-----------ecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-----------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240 (460)
Q Consensus 172 l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~ 240 (460)
|.|.+ .|.|.|.++|++++..+........ ..+.|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus 3 i~~~v---~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTV---RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEe---EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 67888 8999999999995544433332211 133699999999999999999999999988877654
No 167
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.07 E-value=1.2e-09 Score=75.71 Aligned_cols=73 Identities=25% Similarity=0.267 Sum_probs=52.4
Q ss_pred eeecceeeEEEEEEE-ecC---CCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 66 QYLPFRLQGVVQCHI-KAN---PTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~-~~~---~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
+.+.+|.++.|.|.- .+. ...+.++||||+.++... ..+... .....|.|.++..+|+|.|+|.+.+..+...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~-~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD-NEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC-CcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 446678899999973 222 123479999999988632 223332 2345799999999999999999999876553
No 168
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.06 E-value=6.9e-10 Score=77.61 Aligned_cols=72 Identities=25% Similarity=0.487 Sum_probs=54.8
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCC---CccC-Cc--ccEE-----------EecceEEEccccceeceEEEEEEecc
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRD---GVAL-PK--NRVK-----------IVGGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~---~~~~-~~--~~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
|+.++|.|.+ .|.|.|.++|++++ +..+ .. .... .....|.|.++..+|+|.|+|.|.|.
T Consensus 1 G~~v~l~C~v---~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd04974 1 GSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS 77 (90)
T ss_pred CCcEEEEEEE---eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence 6789999999 89999999999852 1111 11 0101 01236899999999999999999999
Q ss_pred cceeeeeeEEEE
Q psy535 230 VATIVQAAQLVV 241 (460)
Q Consensus 230 ~g~~~~~~~l~v 241 (460)
.|....+..|.|
T Consensus 78 ~G~~~~sa~L~V 89 (90)
T cd04974 78 IGPSHHSAWLTV 89 (90)
T ss_pred cCcccCCEEEEe
Confidence 999888888776
No 169
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.06 E-value=7.6e-10 Score=73.99 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=50.1
Q ss_pred EEeeeeccCCCCCCeeEEEcCCCccCCcccEEE---------ecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI---------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240 (460)
Q Consensus 172 l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~ 240 (460)
|.|.+ .|.|.|.++|++++..+....+... ..+.|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v---~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTV---KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEE---eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 67888 8999999999995443333332211 134799999999999999999999999987776543
No 170
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.05 E-value=1.5e-09 Score=70.55 Aligned_cols=63 Identities=24% Similarity=0.449 Sum_probs=49.8
Q ss_pred ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
+|+++.|.|.+.+.+.+ .+.|++++..+. ...........|.|.++...|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP-NITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCC-eEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47889999998777655 799999998775 1223334456899999999999999999988654
No 171
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.04 E-value=2e-09 Score=76.33 Aligned_cols=79 Identities=29% Similarity=0.624 Sum_probs=56.3
Q ss_pred eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-c---cEEEecceEEEccc-----cceeceEEEEEE
Q psy535 156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-N---RVKIVGGNITIEGL-----RRVDFGYYECVV 226 (460)
Q Consensus 156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~---~~~~~~~~l~i~~~-----~~~~~g~y~C~a 226 (460)
..|... .+..|+++.|.|.+ .+.|.|.+.|++++. .+.. . .....++.+.|.++ ...|.|.|+|.|
T Consensus 4 ~~P~~~-~~~~g~~v~l~C~v---~g~P~p~i~W~k~g~-~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 4 SEPSDI-VAVRGGPVVLNCSA---EGEPPPKIEWKKDGV-LLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred ECCCCe-EEcCCCCEEEeeec---ccCCCCEEEEEECCe-ECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEE
Confidence 345444 56789999999999 789999999999544 4432 1 12223556777665 578999999999
Q ss_pred ecc-ccee-eeeeEE
Q psy535 227 SNE-VATI-VQAAQL 239 (460)
Q Consensus 227 ~n~-~g~~-~~~~~l 239 (460)
.|. .|.. +..+.|
T Consensus 79 ~N~~~G~~~s~~~~l 93 (95)
T cd05722 79 QNDSLGSIVSRTARL 93 (95)
T ss_pred ECCccCcEEEeeeEE
Confidence 999 8876 334444
No 172
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.03 E-value=1e-09 Score=74.23 Aligned_cols=71 Identities=18% Similarity=0.411 Sum_probs=53.5
Q ss_pred CCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeee
Q psy535 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 235 (460)
.|... .+..|+.+.|.|.+ .|.|.| .+.|.+++ ..+.. ......+.|.|..+. |.|.|.|.|.|..|...+
T Consensus 4 ~P~~~-~v~~G~~v~l~C~a---~G~P~P~~I~W~k~g-~~l~~-~~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 4 EPEDL-SVTANTPFNLTCQA---VGPPEPVEILWWQGG-SPLGD-PPAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCCce-EEcCCCCEEEEEEe---eeecCCeEEEEEECC-EECCC-CCCCCCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence 34444 68899999999999 899999 79999954 44432 122345678888774 679999999999997543
No 173
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.03 E-value=1.5e-09 Score=71.21 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=50.5
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
+.|.|.+ .|.|.|.+.|++++..+... .+....+.+|.|.++..+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v---~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKV---KAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeE---EEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 3689999 89999999999955433322 3444455689999999999999999999976554444433
No 174
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.01 E-value=3e-09 Score=73.12 Aligned_cols=72 Identities=28% Similarity=0.523 Sum_probs=55.2
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCC--cc--CCcc----cEEE-ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDG--VA--LPKN----RVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~--~~--~~~~----~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
|+.+.|.|.+ .|.|.|.+.|+++.. .. .... ++.. ....|.|.++...|.|.|.|.|.|..|.....+
T Consensus 1 G~~v~l~C~~---~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 1 GETASFHCDV---TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEeec---cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence 6789999998 899999999998531 11 1111 1111 235799999999999999999999999988888
Q ss_pred EEEE
Q psy535 238 QLVV 241 (460)
Q Consensus 238 ~l~v 241 (460)
.|.|
T Consensus 78 ~l~v 81 (81)
T cd05765 78 PLSV 81 (81)
T ss_pred EEeC
Confidence 7754
No 175
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.00 E-value=3.1e-09 Score=74.44 Aligned_cols=72 Identities=24% Similarity=0.488 Sum_probs=54.8
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCC---CccC-Ccc--cEEEe-----------cceEEEccccceeceEEEEEEecc
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRD---GVAL-PKN--RVKIV-----------GGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~---~~~~-~~~--~~~~~-----------~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
|+.+.|.|.+ .+.|.|.+.|++.+ +..+ ... ..... ...|.|.++..+|+|.|+|.|.|.
T Consensus 1 G~~v~L~C~~---~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd05858 1 GSTVEFVCKV---YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS 77 (90)
T ss_pred CCeEEEEEEE---ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence 6789999999 79999999999842 2211 111 11110 146999999999999999999999
Q ss_pred cceeeeeeEEEE
Q psy535 230 VATIVQAAQLVV 241 (460)
Q Consensus 230 ~g~~~~~~~l~v 241 (460)
.|....+..|.|
T Consensus 78 ~G~~~~~a~L~V 89 (90)
T cd05858 78 IGISHHSAWLTV 89 (90)
T ss_pred CCcccceEEEEE
Confidence 999888887766
No 176
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.00 E-value=4.3e-09 Score=73.32 Aligned_cols=70 Identities=33% Similarity=0.583 Sum_probs=54.9
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE-ecceEEEccccceeceEEEEEEecccceee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIV 234 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 234 (460)
.+..|+.+.|.|.+. .+.|.|.+.|++++..... ..+... .++.|.|.++...|.|.|+|.|.|..|...
T Consensus 7 ~~~~G~~v~l~C~~~--~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 7 QVAVGEMAVLECSPP--RGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred EEeCCCCEEEEEECC--CCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 577899999999863 5889999999995443332 223333 346899999999999999999999998754
No 177
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.00 E-value=2.3e-09 Score=71.82 Aligned_cols=69 Identities=35% Similarity=0.527 Sum_probs=52.3
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccC--CcccEEE-ecceEEEccccceeceEEEEEEeccccee-eeeeEEEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVAL--PKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVV 241 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~--~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v 241 (460)
++|.|.+ .|.|.|.+.|++++.... ...++.. .++.|.|.++...|.|.|+|.|.|..|.. +....|.|
T Consensus 1 a~l~C~~---~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAA---SGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEE---eEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4789998 799999999999544332 2334443 35589999999999999999999999974 45555554
No 178
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.99 E-value=3.1e-09 Score=72.98 Aligned_cols=72 Identities=25% Similarity=0.452 Sum_probs=55.6
Q ss_pred eeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
..+.+|++++|.|.+.+.|.. .+.|++++..+... ...|.+.++..+|+|.|+|.+.+..+. ..+..+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~g~y~C~~~~~~~~-~~s~~~~ 77 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPP-QVQWYKNGSPINSS---------QNGLFIPNVSPEDSGNYTCRASNGSGS-NTSTSVN 77 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSS-EEEEEETTEEEEEE---------SSEEEESSEEGGGTEEEEEEEEETTEE-EEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccce-eeeeeeeeeeeeee---------eeeeeeeeeccccCEEEEEEEEeCCCC-eEeeeEE
Confidence 557889999999999987764 89999998877521 122777889999999999999986653 3566666
Q ss_pred EEe
Q psy535 146 VLV 148 (460)
Q Consensus 146 v~v 148 (460)
|.|
T Consensus 78 v~V 80 (80)
T PF13895_consen 78 VTV 80 (80)
T ss_dssp EEE
T ss_pred eeC
Confidence 654
No 179
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.98 E-value=5.1e-09 Score=74.68 Aligned_cols=84 Identities=20% Similarity=0.344 Sum_probs=61.0
Q ss_pred CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCC--cccEEEec--------ceEEEcccccee-
Q psy535 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALP--KNRVKIVG--------GNITIEGLRRVD- 218 (460)
Q Consensus 151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~--~~~~~~~~--------~~l~i~~~~~~~- 218 (460)
||.+. .+... .+..|+.+.|.|.+ .|.|.| .+.|++++..+.. ..++.+.. +.|.|.++...|
T Consensus 2 pp~i~-~~~~~-~~~~G~~v~L~C~~---~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~ 76 (98)
T cd05758 2 PPIIT-SEATQ-YAILGDKGRVECFI---FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDF 76 (98)
T ss_pred CCeEc-CCCcE-EEeCCCcEEEEEEE---cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccc
Confidence 55553 33333 57889999999999 799999 6999985433322 23444432 369999999855
Q ss_pred ceEEEEEEecccceeeeeeEE
Q psy535 219 FGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 219 ~g~y~C~a~n~~g~~~~~~~l 239 (460)
.|.|.|.|.|..|.....+.|
T Consensus 77 ~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 77 QTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred ceeEEEEEEcCCCcccEEEEe
Confidence 899999999999997776654
No 180
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.97 E-value=8.9e-09 Score=71.21 Aligned_cols=83 Identities=19% Similarity=0.200 Sum_probs=61.5
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
....+.+|+++.|.|.+.++|++..+.|.+++..+............. +.|.|.+++.+|+|.|+|.|.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 345688899999999999999986699999987665333322221111 35999999999999999999998776
Q ss_pred cceeeEEEEEe
Q psy535 138 QGSSGQMEVLV 148 (460)
Q Consensus 138 ~~~~~~~~v~v 148 (460)
. +.++.|.|
T Consensus 91 ~--s~tF~l~v 99 (101)
T cd05860 91 A--SVTFNVYV 99 (101)
T ss_pred E--EEEEEEEE
Confidence 5 44454544
No 181
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.96 E-value=7.4e-09 Score=72.11 Aligned_cols=78 Identities=17% Similarity=0.309 Sum_probs=52.0
Q ss_pred eeecceeeEEEEEEEecCCCCCeEEEeeCC--eecCc--cccccEEEeecCeEEEeecCCCCCeEEEEEEEc-CCCCcce
Q psy535 66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLEP--YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN-AHGTQGS 140 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~-~~g~~~~ 140 (460)
+...+|+++.|.|.. +.|.+ .+.|++.+ ..... ....+.. ..++.|.|.++..+|+|.|+|.+.+ ..+..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-- 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLI-HTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-- 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEE-EecCeEEEeeCChhHCEEEEEEEEccCCeEE--
Confidence 456789999999996 45554 79999833 22111 0123333 3456799999999999999999985 44433
Q ss_pred eeEEEEEe
Q psy535 141 SGQMEVLV 148 (460)
Q Consensus 141 ~~~~~v~v 148 (460)
...+.|.|
T Consensus 81 ~~~~~l~v 88 (91)
T cd05871 81 LAKYTLHV 88 (91)
T ss_pred EEEEEEEE
Confidence 33555554
No 182
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.96 E-value=5.5e-09 Score=72.12 Aligned_cols=72 Identities=15% Similarity=0.281 Sum_probs=54.7
Q ss_pred CCeEEEEeeeeccCCC--CCCeeEEEcCCCccCCccc---------EEEecceEEEccccceeceEEEEEEecccceeee
Q psy535 167 GESVDMHCEAQEAEGT--QKPTITWQRRDGVALPKNR---------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~--p~~~~~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 235 (460)
|+.+.|.|.+ .+. |.+.+.|.+.+........ .......|.|.+++..|+|.|+|.|.|..|....
T Consensus 1 Ge~~~L~C~~---~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 1 GETLVLNCTV---LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred CCeEEEEEEE---EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 6889999999 677 8889999875543221110 1123457999999999999999999999998888
Q ss_pred eeEEEE
Q psy535 236 AAQLVV 241 (460)
Q Consensus 236 ~~~l~v 241 (460)
+..+.|
T Consensus 78 s~~v~v 83 (84)
T cd05742 78 STKVNI 83 (84)
T ss_pred EEEEEE
Confidence 777654
No 183
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.96 E-value=1.4e-09 Score=70.89 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=42.8
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC-----eEEEeecCCCCCeEEEEEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG-----SLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~l~i~~~~~~d~G~y~C~~ 131 (460)
|++++|.|.+...+++..+.|++++..+... ........+ .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG--STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEE--EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCc--ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6789999999444445589999998876532 111112222 2999999999999999986
No 184
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.96 E-value=7.3e-09 Score=72.67 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=56.6
Q ss_pred CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC-CcccEEEe-c----ceEEEccccceeceEEEEEEeccc
Q psy535 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV-G----GNITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-~~~~~~~~-~----~~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
.|... .+..|+.+.|.|.+ .|.| +.+.|++.++..+ ...+.... . ..|.|.++..+|.|.|+|.|.|..
T Consensus 6 ~p~~~-~v~~G~~~~l~C~~---~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 80 (92)
T cd04977 6 VPSQG-EISVGESKFFLCQV---IGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK 80 (92)
T ss_pred ecCcE-EECCCCeEEEEEEe---EeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence 34443 67889999999999 6776 4999997555433 32333322 2 379999999999999999999986
Q ss_pred ce-eeeeeEEE
Q psy535 231 AT-IVQAAQLV 240 (460)
Q Consensus 231 g~-~~~~~~l~ 240 (460)
|. ...++.|.
T Consensus 81 g~~~~~sv~l~ 91 (92)
T cd04977 81 GTESEATVNLK 91 (92)
T ss_pred CCcceeEEEEE
Confidence 54 45555443
No 185
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.95 E-value=8.8e-09 Score=71.44 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=52.7
Q ss_pred eeeecceeeEEEEEEEec----------CCCCCeEEEeeCCeecCccc---cc-cEEEeecCeEEEeecCCCCCeEEEEE
Q psy535 65 VQYLPFRLQGVVQCHIKA----------NPTFQYVTWTKDKRLLEPYQ---TK-DIVVMQNGSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~----------~~~~~~v~W~~~~~~~~~~~---~~-~~~~~~~~~l~i~~~~~~d~G~y~C~ 130 (460)
...+.+|+.+.|.|.... ......++|+|++..+.... .. ......+..|.|.++..+|+|.|+|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 345778999999998611 11122699999975554322 11 12334566899999999999999999
Q ss_pred EEcCCCCccee
Q psy535 131 PYNAHGTQGSS 141 (460)
Q Consensus 131 ~~~~~g~~~~~ 141 (460)
+.|.......+
T Consensus 89 ~rN~t~C~~~~ 99 (104)
T cd05896 89 LRNSTYCMKVS 99 (104)
T ss_pred ECCCCcceEEE
Confidence 99876554333
No 186
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.94 E-value=5.3e-09 Score=70.68 Aligned_cols=70 Identities=30% Similarity=0.594 Sum_probs=55.4
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcc--cEEEe--cceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
+.|.|.+ .|.|.|.+.|++++..+.... ++... +..|.|.++...|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v---~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHA---EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEe---eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689998 799999999999655443322 23332 2469999999999999999999999999988888775
No 187
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.94 E-value=4.6e-09 Score=71.54 Aligned_cols=67 Identities=34% Similarity=0.649 Sum_probs=50.4
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccC--------CcccEEE-ecceEEEccccceeceEEEEEEeccccee-eeeeEE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVAL--------PKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQL 239 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l 239 (460)
++|.|.+ .|.|.|.+.|++.++... ...++.. .+++|.|.++...|.|.|.|.|.|..|.. +..+.|
T Consensus 1 v~l~C~~---~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSA---EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeC---eEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 5789998 799999999998644221 1233333 45789999999999999999999999976 333433
No 188
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.93 E-value=1.1e-08 Score=70.87 Aligned_cols=73 Identities=32% Similarity=0.482 Sum_probs=57.8
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
.+..|+.++|.|.+. .+.|.+.+.|++++.. ++. +....++.|.|.++..+|+|.|.|.|.|..|.......|
T Consensus 12 ~v~~G~~v~L~C~~~--~~~~~~~i~W~~~~~~-~~~-~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 12 EVRPGADVSFICRAK--SKSPAYTLVWTRVGGG-LPS-RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EEcCCCCEEEEEEcC--CCCCCcEEEEEECCCc-CCC-cccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 578899999999983 3468889999996544 322 223346789999999999999999999999988776654
No 189
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.92 E-value=2.3e-08 Score=70.77 Aligned_cols=92 Identities=40% Similarity=0.711 Sum_probs=68.7
Q ss_pred CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421 (460)
Q Consensus 343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (460)
|.+|.++.+.... .++.|+|.++....+.+.+|.|+|...+. ..|..+......
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~-------------------------~~~~~~~~~~~~ 55 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGS-------------------------GDWKEVEVTPGS 55 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCC-------------------------CCCEEeeccCCc
Confidence 4567777777766 69999999986655678899999987531 112222222135
Q ss_pred cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
...+.+.+|.|++.|.|+|+|.+..|.|.++..+.++|
T Consensus 56 ~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~~~~~~t 93 (93)
T cd00063 56 ETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93 (93)
T ss_pred ccEEEEccccCCCEEEEEEEEECCCccCCCcccccccC
Confidence 67899999999999999999999999998888666554
No 190
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.91 E-value=1.3e-08 Score=72.14 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=52.8
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC------ccccccEEEe----ecCeEEEeecCCCCCeEEEEEEEc
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE------PYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
....+.+|++++|.|.+.+.+.+ .+.|++.+..+. +....++... ....|.|.+++.+|+|.|+|.+.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 34567889999999999877654 799986332210 0112344332 224699999999999999999987
Q ss_pred CCCCcceeeEE
Q psy535 134 AHGTQGSSGQM 144 (460)
Q Consensus 134 ~~g~~~~~~~~ 144 (460)
... ...++.+
T Consensus 84 ~~~-~~~~~~~ 93 (95)
T cd05717 84 MPV-QTAKATV 93 (95)
T ss_pred CCC-ceEEEEE
Confidence 543 3344443
No 191
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.91 E-value=1.5e-08 Score=71.10 Aligned_cols=66 Identities=33% Similarity=0.668 Sum_probs=51.9
Q ss_pred CCCeEEEEeeeeccCCCCCCeeEEEcCCCccC---CcccEEEecceEEEcccc-ceeceEEEEEEecccceeee
Q psy535 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVAL---PKNRVKIVGGNITIEGLR-RVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~---~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~ 235 (460)
.+..+.|.|.+ .|.|.|.+.|++++ ..+ ...++...++.|.|.++. ..|.|.|+|.|.|..|...+
T Consensus 18 ~~~~~~l~C~~---~g~p~p~i~W~k~~-~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRA---RGSPPPTYRWLMNG-TEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEee---eEcCCCEEEEEECC-EECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 45689999999 78899999999954 343 233555567789998876 48999999999999997543
No 192
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.91 E-value=1.6e-08 Score=68.42 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=58.2
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~ 143 (460)
....+..|+++.|.|...+.. + .+.|++++..+.+ +.++.....| |.|..++..|+|.|+|.+. ..|....-+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~-A-~v~W~~ng~~l~~--~~r~~~~~~G-LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~ 77 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNL-A-SPVWLFNGTPLNA--QFSYRVGTDG-LLILVTSPEHSGTYRCYSE-EEGFQQLVAS 77 (85)
T ss_pred eEEEEecCCCEEEECCCCCCC-c-cEEEEECCcccCC--CcceEEeCCC-CEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence 345677899999999997753 3 7999999999864 3455555555 7799999999999999986 3455444444
Q ss_pred EEEEe
Q psy535 144 MEVLV 148 (460)
Q Consensus 144 ~~v~v 148 (460)
+.|.|
T Consensus 78 y~l~v 82 (85)
T cd05872 78 YSLNV 82 (85)
T ss_pred EEEEE
Confidence 44443
No 193
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.91 E-value=5.2e-09 Score=70.38 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=50.0
Q ss_pred ceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecc
Q psy535 153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+.+.|... .+..|+.++|.|.+ .+.|. ..+.|+++ +..+. ..+..|.|.++ .+|+|.|+|.|.|.
T Consensus 2 vv~~~P~~~-~v~~G~~V~L~C~~---~~~p~~~~~~W~kn-g~~l~-----~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPPWT-TIFQGEKVTLTCNG---FNSPEQNSTQWYHN-GKLLE-----TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCCCe-EeeCCCCEEEEEeC---CCCCCCccEEEEEC-CEEee-----ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 344555554 68899999999998 66665 47999994 43331 24567999999 99999999999875
No 194
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.90 E-value=1.1e-08 Score=70.62 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=51.4
Q ss_pred eeeEEEEEEEecCCC-CCeEEEeeCCeecCcc---ccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535 71 RLQGVVQCHIKANPT-FQYVTWTKDKRLLEPY---QTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG 142 (460)
Q Consensus 71 g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~---~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~ 142 (460)
|+++.|.|.+.+.+. ...+.|..++...... ...+.. ....+.|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 678999999987543 2468999877643210 110111 11235799999999999999999999887655554
Q ss_pred EEEE
Q psy535 143 QMEV 146 (460)
Q Consensus 143 ~~~v 146 (460)
.+.|
T Consensus 81 ~~~V 84 (86)
T cd05862 81 IVIV 84 (86)
T ss_pred EEEE
Confidence 4433
No 195
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.90 E-value=1.5e-08 Score=69.64 Aligned_cols=73 Identities=14% Similarity=0.286 Sum_probs=49.8
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
+.|.|.+.|..+.+.|+|+++|.++...... .....+ +.|.|.....+|.|.|+|.|.|..........++|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYS-KELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceee-eeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 6899999885333489999999987532111 111122 24777777778899999999998766656666655
Q ss_pred E
Q psy535 147 L 147 (460)
Q Consensus 147 ~ 147 (460)
.
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 4
No 196
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.90 E-value=5.8e-09 Score=70.47 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=49.1
Q ss_pred EEEEeeeeccCC-CCCCeeEEEcCCCccCCcccEE---E----ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 170 VDMHCEAQEAEG-TQKPTITWQRRDGVALPKNRVK---I----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 170 ~~l~C~~~~~~~-~p~~~~~W~~~~~~~~~~~~~~---~----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
+.|.|.+ .| .|.|.+.|++++..+....+.. . ....|.|.++...|.|.|+|.|.|..|....++
T Consensus 1 ~~l~C~~---~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEA---TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEc---cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 4689999 67 8999999999554333222211 1 234799999999999999999999999876654
No 197
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.88 E-value=7.7e-09 Score=72.37 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=58.5
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC-C
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA-H 135 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~-~ 135 (460)
|.+...|. ..+..|++|+|.|.... + ...+.|+|+|....... .......+.|.|.+++.+|+|.|+|+..+. .
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~~-~-~~~f~l~k~g~~~~~~~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~ 77 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGPY-G-AVEYRLYREGSTFAVKK--PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVA 77 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecCC-C-CCEEEEEECCCCccccc--cCCCceeEEEEccCCChhHCEEEEEEEECCCC
Confidence 34445554 46788999999998753 3 33799999987543110 001122346999999999999999999876 3
Q ss_pred CCcceeeEEEEEe
Q psy535 136 GTQGSSGQMEVLV 148 (460)
Q Consensus 136 g~~~~~~~~~v~v 148 (460)
+....+..+.|.|
T Consensus 78 ~~S~~Sd~lel~V 90 (91)
T cd05751 78 LWSEPSDPLELVV 90 (91)
T ss_pred ccCCCCCcEEEEe
Confidence 3344555666654
No 198
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.87 E-value=2.1e-08 Score=71.35 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=53.9
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe-----ecC------------ccccccEEEeecCeEEEeecCCCCC
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR-----LLE------------PYQTKDIVVMQNGSLLFTRVNQNHQ 124 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~ 124 (460)
.+....+.+|+++.|.|...... ...+.|+|+.. .+. +....|..+..+++|.|.+++.+|+
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~-~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPEN-LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCC-ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 33344577899999999764332 23799999632 110 1234567777889999999999999
Q ss_pred eEEEEEEEcCCCC
Q psy535 125 GRYTCTPYNAHGT 137 (460)
Q Consensus 125 G~y~C~~~~~~g~ 137 (460)
|.|+|.+.+....
T Consensus 83 G~Y~~~v~~~~~~ 95 (105)
T cd05774 83 GFYTLQTITTNFQ 95 (105)
T ss_pred EEEEEEEEeCCcc
Confidence 9999999886643
No 199
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.85 E-value=1.1e-08 Score=71.07 Aligned_cols=70 Identities=7% Similarity=0.123 Sum_probs=48.0
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc------------cccEEEe----ec--CeEEEeecCCCCCeEEE
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ------------TKDIVVM----QN--GSLLFTRVNQNHQGRYT 128 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~------------~~~~~~~----~~--~~l~i~~~~~~d~G~y~ 128 (460)
.+.+|++|+|.|.+.+.+.+ .+.|++++....... ..++... .. ..|.|.+++.+|+|.|+
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45689999999999887654 799997663321111 1111111 11 25999999999999999
Q ss_pred EEEEcCCCC
Q psy535 129 CTPYNAHGT 137 (460)
Q Consensus 129 C~~~~~~g~ 137 (460)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999876543
No 200
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.85 E-value=3.9e-08 Score=67.58 Aligned_cols=73 Identities=19% Similarity=0.364 Sum_probs=53.0
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc----cEE----EecceEEEccccceeceEEEEEEecccc--eeeee
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN----RVK----IVGGNITIEGLRRVDFGYYECVVSNEVA--TIVQA 236 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~----~~~----~~~~~l~i~~~~~~~~g~y~C~a~n~~g--~~~~~ 236 (460)
|+.++|.|.+ .+.|.+.+.|.+.++...... +.. .....|.|.+++..|+|.|.|.|.|..+ ....+
T Consensus 1 Ge~~~l~C~~---~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCIV---QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEEE---ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 7889999999 678899999997543221110 111 1245799999999999999999998766 55666
Q ss_pred eEEEEe
Q psy535 237 AQLVVE 242 (460)
Q Consensus 237 ~~l~v~ 242 (460)
+.|.|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 666653
No 201
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.83 E-value=3.3e-08 Score=66.58 Aligned_cols=64 Identities=25% Similarity=0.499 Sum_probs=46.7
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccC--CcccEEE--ecceEEEccccc----eeceEEEEEEecccceeeee
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVAL--PKNRVKI--VGGNITIEGLRR----VDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~--~~~~~~~--~~~~l~i~~~~~----~~~g~y~C~a~n~~g~~~~~ 236 (460)
+.|.|.+ .|.|.|.+.|++++..+. ...+... .+++|.|..+.. .|.|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a---~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEA---KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeC---cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 4789999 899999999999554331 1223333 356788877764 36899999999999986543
No 202
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.82 E-value=2.6e-08 Score=69.36 Aligned_cols=77 Identities=14% Similarity=0.255 Sum_probs=56.7
Q ss_pred ccCCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 163 QRKVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
.+..|....|.|..... ...|.|.+.|++++ ..+...+... .++.|.|.++..+|+|.|+|.+.|..+.....+..
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~-~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~ 84 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC-KLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR 84 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECC-EECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence 56789999999987421 12367899999954 4554433333 66789999999999999999999988776555444
Q ss_pred E
Q psy535 240 V 240 (460)
Q Consensus 240 ~ 240 (460)
.
T Consensus 85 t 85 (92)
T cd05757 85 T 85 (92)
T ss_pred E
Confidence 3
No 203
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.82 E-value=4.5e-08 Score=66.83 Aligned_cols=63 Identities=17% Similarity=0.453 Sum_probs=50.8
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEecceEEEccccceeceEEEEEEecc
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+..|+++.|.|.+ . .+.+.+.|++++..+... .++.+.++.|.|.+++..|+|.|+|.+.+.
T Consensus 7 ~v~~G~~v~L~C~~---~-~~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 7 TFKLGNNAELKCSP---K-SNLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEECCCCEEEEEEC---C-CCCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 67889999999997 3 367899999954433332 456677788999999999999999999875
No 204
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.81 E-value=1.1e-07 Score=66.21 Aligned_cols=79 Identities=24% Similarity=0.444 Sum_probs=57.7
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeC-CeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
...+..|+++.|.|.+.+.+. ..+.|+++ +..+.. ..++..... ..|.|.++...|+|.|+|.+.+..+....
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~v~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPP-PEVTWYKQGGKLLAE--SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCC-CeEEEEECCCEEcCC--CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 455678999999999988744 47999998 776642 233333333 57999999999999999999977666533
Q ss_pred eeEEEEEe
Q psy535 141 SGQMEVLV 148 (460)
Q Consensus 141 ~~~~~v~v 148 (460)
. +.|.|
T Consensus 80 ~--~~l~V 85 (86)
T smart00410 80 T--TTLTV 85 (86)
T ss_pred E--EEEEE
Confidence 3 44443
No 205
>smart00409 IG Immunoglobulin.
Probab=98.81 E-value=1.1e-07 Score=66.21 Aligned_cols=79 Identities=24% Similarity=0.444 Sum_probs=57.7
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeC-CeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
...+..|+++.|.|.+.+.+. ..+.|+++ +..+.. ..++..... ..|.|.++...|+|.|+|.+.+..+....
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~v~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPP-PEVTWYKQGGKLLAE--SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCC-CeEEEEECCCEEcCC--CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 455678999999999988744 47999998 776642 233333333 57999999999999999999977666533
Q ss_pred eeEEEEEe
Q psy535 141 SGQMEVLV 148 (460)
Q Consensus 141 ~~~~~v~v 148 (460)
. +.|.|
T Consensus 80 ~--~~l~V 85 (86)
T smart00409 80 T--TTLTV 85 (86)
T ss_pred E--EEEEE
Confidence 3 44443
No 206
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.81 E-value=2e-08 Score=67.84 Aligned_cols=63 Identities=32% Similarity=0.617 Sum_probs=46.5
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEE--ecceEEEccccc----eeceEEEEEEecccceeee
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKI--VGGNITIEGLRR----VDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~--~~~~l~i~~~~~----~~~g~y~C~a~n~~g~~~~ 235 (460)
+.|.|.+ .|.|.|.++|++++..+.. ..++.. ..+.|.|..+.. .|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~---~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEA---KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeC---cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4789998 8999999999995443322 223333 356888888754 6899999999999997543
No 207
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.80 E-value=8.5e-08 Score=69.77 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=56.5
Q ss_pred ceeeeecceeeEEEEEEEecCC---CCCeEEEe---------------eCCeecC---ccccccEEEe-----ecCeEEE
Q psy535 63 PTVQYLPFRLQGVVQCHIKANP---TFQYVTWT---------------KDKRLLE---PYQTKDIVVM-----QNGSLLF 116 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~---------------~~~~~~~---~~~~~~~~~~-----~~~~l~i 116 (460)
+....+..|++++|.|...... ....|.|. ++|.... +....|+... .+.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 4445677899999999996643 23479993 2333321 1112344332 3457999
Q ss_pred eecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
.+++.+|+|.|+|.+.|..+.......+.|.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 9999999999999999887655455555554
No 208
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.80 E-value=1.8e-08 Score=68.17 Aligned_cols=74 Identities=16% Similarity=0.332 Sum_probs=51.0
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
|.+...+.......+. ++|.|.+.+.+++..+.|+....... ..........+.|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 5566666555555555 99999999987566899991111111 12223334456799999999999999999976
No 209
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.79 E-value=6.5e-08 Score=65.13 Aligned_cols=64 Identities=27% Similarity=0.493 Sum_probs=46.6
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCcc--CCcccEEE--ecceEEEcccc----ceeceEEEEEEecccceeeee
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVA--LPKNRVKI--VGGNITIEGLR----RVDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~--~~~~~~~~--~~~~l~i~~~~----~~~~g~y~C~a~n~~g~~~~~ 236 (460)
+.|.|.+ .|.|.|.+.|++++... ....++.. .+++|.|..+. ..|.|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~---~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEA---KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEec---cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4689999 89999999999955422 12334443 35688888764 246899999999999976543
No 210
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.78 E-value=6.5e-08 Score=67.22 Aligned_cols=75 Identities=25% Similarity=0.465 Sum_probs=56.8
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-----ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
.+..|+.+.|.|.+ .+.|.+.+.|++++........... ....|.|.++..+|.|.|.|.+.|..|....++
T Consensus 5 ~~~~G~~~~l~C~~---~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~ 81 (85)
T cd05729 5 AVPAGSTVRLKCPA---SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY 81 (85)
T ss_pred EecCCCcEEEEEEc---CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence 45679999999998 7889999999996544332222221 123588899999999999999999999877776
Q ss_pred EEE
Q psy535 238 QLV 240 (460)
Q Consensus 238 ~l~ 240 (460)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05729 82 KVD 84 (85)
T ss_pred EEe
Confidence 654
No 211
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.78 E-value=6.6e-08 Score=67.58 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=56.9
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc----ccEEEecceEEEccccceeceEEEEEEeccc-ceeeeee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK----NRVKIVGGNITIEGLRRVDFGYYECVVSNEV-ATIVQAA 237 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~-g~~~~~~ 237 (460)
.+..|+.+.|.|.+ .+ |.+.+.|++++...... .++......|.|.++..+|+|.|+|.|.+.. +....+.
T Consensus 7 ~v~~g~~v~L~C~~---~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 82 (89)
T cd04979 7 TVVEGNSVFLECSP---KS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY 82 (89)
T ss_pred EEECCCcEEEEEeC---CC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence 56789999999997 45 78899999966543322 3445555679999999999999999998654 4455556
Q ss_pred EEEEe
Q psy535 238 QLVVE 242 (460)
Q Consensus 238 ~l~v~ 242 (460)
.+.|.
T Consensus 83 ~l~V~ 87 (89)
T cd04979 83 SLNVL 87 (89)
T ss_pred EEEEe
Confidence 66654
No 212
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.78 E-value=9.6e-08 Score=66.38 Aligned_cols=69 Identities=16% Similarity=0.325 Sum_probs=50.1
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC------ccccccEEEee-cC---eEEEeecCCCCCeEEEEEEEc
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE------PYQTKDIVVMQ-NG---SLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~-~~---~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.+..+.+|+++.|.|.+.+.... .+.|++.+..+. +....|+.... ++ +|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 34678899999999999887543 588887664321 11334554433 22 599999999999999999975
No 213
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.76 E-value=3.3e-08 Score=66.77 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=48.4
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCc----ccEEE----ecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPK----NRVKI----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~----~~~~~----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
+.|.|.+. .+.|.+.+.|++++..+... .++.. ....|.|.++...|+|.|+|.+.|..|....+..
T Consensus 1 ~~L~C~a~--~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETV--SEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecc--cCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 46899973 45788899999955433211 11222 1357999999999999999999999998776543
No 214
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.75 E-value=1.1e-07 Score=66.19 Aligned_cols=76 Identities=17% Similarity=0.310 Sum_probs=57.5
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCc-c-----CCcccEEEecceEEEccccceeceEEEEEEe-cccceeee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV-A-----LPKNRVKIVGGNITIEGLRRVDFGYYECVVS-NEVATIVQ 235 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~-~-----~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~-n~~g~~~~ 235 (460)
.+..|+.+.|.|.. +.|.|.+.|++.+.. . ....+.....+.|.|.++..+|+|.|+|.+. |..+....
T Consensus 7 ~~~eG~~v~L~C~~----~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~ 82 (91)
T cd05871 7 YGVENNSTFLECLP----KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLA 82 (91)
T ss_pred EEecCCcEEEEEEC----CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence 56789999999995 368899999974321 1 1234555666789999999999999999998 56666666
Q ss_pred eeEEEEe
Q psy535 236 AAQLVVE 242 (460)
Q Consensus 236 ~~~l~v~ 242 (460)
..+|.|.
T Consensus 83 ~~~l~v~ 89 (91)
T cd05871 83 KYTLHVI 89 (91)
T ss_pred EEEEEEe
Confidence 7777664
No 215
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.75 E-value=6.2e-08 Score=68.39 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=52.9
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecC----------------ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLE----------------PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~----------------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
|++|+|.|...... ...|.|+++..... +....+.....+++|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~-~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPEN-LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCC-CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 67899999887643 34799999653321 11234555666788999999999999999999876
Q ss_pred CCCcceeeEEEEE
Q psy535 135 HGTQGSSGQMEVL 147 (460)
Q Consensus 135 ~g~~~~~~~~~v~ 147 (460)
.+.. ....+.|.
T Consensus 80 ~~~~-~~~~~~l~ 91 (92)
T cd05741 80 NGVT-ENAKFFLR 91 (92)
T ss_pred CCcE-EEEEEEEE
Confidence 6443 44455443
No 216
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.73 E-value=8e-08 Score=67.33 Aligned_cols=63 Identities=24% Similarity=0.496 Sum_probs=49.4
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------CcccEEEe-----cceEEEccccceeceEEEEEEec
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------PKNRVKIV-----GGNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n 228 (460)
.+..|+.+.|.|.+ .+.|.+.+.|.+.+...+ ...++... ..+|.|.++..+|.|.|+|.+..
T Consensus 8 tv~~G~tv~L~C~v---~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 8 TVAVGGTVTLKCGV---KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred EEecCCcEEEEEEE---eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 67899999999999 788999999998654321 22333322 34799999999999999999986
No 217
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.71 E-value=1.1e-07 Score=66.90 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=53.4
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCC--------CccCCcccEEEe-----cceEEEccccceeceEEEEEEecc
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRD--------GVALPKNRVKIV-----GGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~--------~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+..|++++|.|.+ .+.|.+.+.|++.+ .......++... ..+|.|.+++.+|+|.|.|.+.+.
T Consensus 8 ~v~eG~~v~L~C~~---~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 8 TVVEGGTANLTCRV---DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred EEecCCcEEEEEEE---ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 67899999999999 78899999998632 222234454431 247999999999999999999874
Q ss_pred cceeeeeeEEE
Q psy535 230 VATIVQAAQLV 240 (460)
Q Consensus 230 ~g~~~~~~~l~ 240 (460)
. .......|.
T Consensus 85 ~-~~~~~~~l~ 94 (95)
T cd07701 85 P-VKTSKAYLT 94 (95)
T ss_pred c-CccEEEEEE
Confidence 2 224444443
No 218
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.69 E-value=2.2e-07 Score=64.98 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=58.4
Q ss_pred CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCC--cccEEEe--------cceEEEcccccee-
Q psy535 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALP--KNRVKIV--------GGNITIEGLRRVD- 218 (460)
Q Consensus 151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~--~~~~~~~--------~~~l~i~~~~~~~- 218 (460)
||.+ ..... ..+..|+.+.|.|.+ .+.|.| .+.|...+..+.. ..++.+. .+.|.|.++...|
T Consensus 2 pP~i-~~~~s-~~~~~G~~~~L~C~~---~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~ 76 (98)
T cd05898 2 PPII-SSEQV-QYAVRGERGKVKCFI---GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADF 76 (98)
T ss_pred CCEE-ecCce-EEEeCCCcEEEEEEE---ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccC
Confidence 5655 23333 368899999999998 566776 5677764332212 2344442 2369999998767
Q ss_pred ceEEEEEEecccceeeeeeEE
Q psy535 219 FGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 219 ~g~y~C~a~n~~g~~~~~~~l 239 (460)
.|.|.|.|.|.+|.....+.|
T Consensus 77 ~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 77 QTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred CcEEEEEEEeCCccceEEEEe
Confidence 789999999999998776654
No 219
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.68 E-value=9.1e-08 Score=66.30 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=53.7
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--Ccc-cEEE-ecceEEEccccceeceEEEEEEeccccee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--PKN-RVKI-VGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--~~~-~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.+..|+.+.|.|... .+.|.+.+.|++++.... ... ++.. .++.|.+.++...|.|.|.|.|.|.....
T Consensus 14 ~v~eG~~~~L~C~pP--~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 14 KVKEGWGVVLFCDPP--PHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeCCcEEEeeCCC--CCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 578899999999875 899999999999654321 122 2222 36899999999999999999999976443
No 220
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.67 E-value=8.6e-08 Score=65.58 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=50.6
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccccee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.+..|+.++|.|... .+.+.+.+.|++++. .+.. ......|.|.++...|+|.|+|.+.+..|..
T Consensus 10 ~V~~G~~vtL~C~~~--~~~~~~~~~w~k~g~-~~~~---~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 10 VVFEGEPLVLRCHGW--KNKPVYKVTYYRDGK-AKKY---SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred eecCCCCEEEEeeCC--CCCcceEEEEEECCe-Eccc---cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 578999999999973 356677899999554 3321 1234679999999999999999999988754
No 221
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.67 E-value=8e-08 Score=68.04 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=53.2
Q ss_pred ceeeEEEEEEEecCCCCCeEEEeeCCeecCcc---------------ccccEEEee-cCeEEEeecCCCCCeEEEEEEEc
Q psy535 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY---------------QTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~---------------~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.|++|+|.|..........+.|++....+... ...|+.+.. +.+|.|.+++.+|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 58999999987542223469999864322110 012333333 36799999999999999999988
Q ss_pred CCCCcceeeEEEEEe
Q psy535 134 AHGTQGSSGQMEVLV 148 (460)
Q Consensus 134 ~~g~~~~~~~~~v~v 148 (460)
..|.. ....+.|.|
T Consensus 83 ~~~~~-~~~~f~L~v 96 (97)
T cd05775 83 KNGVT-ITKEFTLHI 96 (97)
T ss_pred CCCCe-EEEEEEEEe
Confidence 77554 566776665
No 222
>PHA03376 BARF1; Provisional
Probab=98.66 E-value=4.8e-07 Score=68.82 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=73.7
Q ss_pred eeecceeeEEEEEEEecCC--CCCeEEEeeCCe----ec---------Cc--cccccEEE---eecCeEEEeecCCCCCe
Q psy535 66 QYLPFRLQGVVQCHIKANP--TFQYVTWTKDKR----LL---------EP--YQTKDIVV---MQNGSLLFTRVNQNHQG 125 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~~----~~---------~~--~~~~~~~~---~~~~~l~i~~~~~~d~G 125 (460)
+....|+.+.|.|...... ....|.|+|.+. .+ .+ ....+..+ ..+-+|.|.+++.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 4456799999999875221 224699999421 11 00 01222222 12226999999999999
Q ss_pred EEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCC
Q psy535 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194 (460)
Q Consensus 126 ~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~ 194 (460)
.|+|.+............+ .+-.|-.+.+..... ....-+..++.|.. .|.|.|.+.|..+.+
T Consensus 101 tY~C~fQkge~~~~k~ehL--t~V~~~~Lsv~a~~~-dFp~~~~~~i~C~s---ggfP~P~~~Wle~~~ 163 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHL--SVVKPLTLSVHSERS-QFPDFSVLTVTCTV---NAFPHPHVQWLMPEG 163 (221)
T ss_pred eEEEEEEcCCCceeeeeee--eeeecceEEEEeccc-cCCCCCeeEEEEec---CCcCCchheeccccC
Confidence 9999998654332222222 222233333333221 23336677899996 899999999998555
No 223
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.64 E-value=1.6e-07 Score=60.76 Aligned_cols=63 Identities=35% Similarity=0.619 Sum_probs=47.8
Q ss_pred CCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc
Q psy535 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
.|+.+.|.|.+ .+.+.+.+.|++++...............|.|.++...|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA---EGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC---ccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47889999997 6788899999995543332122223455799999999999999999988754
No 224
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.63 E-value=3.4e-07 Score=61.18 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=50.9
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCcccccc----EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD----IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
+.|.|.+.|..|++.|+|++++.++....... -.....++|.|.....+|...|+|+|.|..-.. ......|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~-~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKD-LQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCC-ceeeEEEEEE
Confidence 68999999987777999999999986421110 001122358888777788888999999876432 4445555543
No 225
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.62 E-value=4.3e-07 Score=66.55 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=52.6
Q ss_pred ceeeeecceeeEEEEEEEecCCC---CCeEEEeeC----Cee--cC-------c----cccccEEEe-----ecCeEEEe
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT---FQYVTWTKD----KRL--LE-------P----YQTKDIVVM-----QNGSLLFT 117 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~----~~~--~~-------~----~~~~~~~~~-----~~~~l~i~ 117 (460)
|....+.+|++++|.|.....++ ...|.|++- +.+ +. . ....+.... .+.+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 45567788999999999865432 235999741 221 10 0 001222221 23469999
Q ss_pred ecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
+++.+|+|.|+|.+.|..+.......+.|
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~ 113 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRL 113 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEE
Confidence 99999999999999987664333344444
No 226
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.58 E-value=2.5e-07 Score=63.99 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=54.6
Q ss_pred cccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE-ecceEEEccccceece-EEEEEEecccce
Q psy535 162 YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI-VGGNITIEGLRRVDFG-YYECVVSNEVAT 232 (460)
Q Consensus 162 ~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~-~~~~l~i~~~~~~~~g-~y~C~a~n~~g~ 232 (460)
..+.+|+.+.|.|... .|.|.|.+.|++++...+. ..|+.+ .+++|.|.++...|.| .|.|.|.|....
T Consensus 13 v~V~eG~~~~L~C~pP--~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 13 VEVEEGDSVVLPCNPP--KSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred eEEecCCCEEEEecCC--CCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 3688999999999742 8999999999975543332 445555 3689999999999999 799999987533
No 227
>PHA03376 BARF1; Provisional
Probab=98.58 E-value=1e-06 Score=67.16 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=57.5
Q ss_pred cccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecC
Q psy535 7 SLETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKAN 83 (460)
Q Consensus 7 ~~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 83 (460)
++.+|+.+..+ -+|.|.+++.+|.|.|+|.+....... ...-.|++-.|-...+.......+.-....+.|.+.|.
T Consensus 73 EyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggf 151 (221)
T PHA03376 73 PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAF 151 (221)
T ss_pred ccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCCce-eeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCc
Confidence 56678888554 299999999999999999999876544 22233333222222222222222334456899998788
Q ss_pred CCCCeEEEeeCCe
Q psy535 84 PTFQYVTWTKDKR 96 (460)
Q Consensus 84 ~~~~~v~W~~~~~ 96 (460)
|.| .++|.-+..
T Consensus 152 P~P-~~~Wle~~~ 163 (221)
T PHA03376 152 PHP-HVQWLMPEG 163 (221)
T ss_pred CCc-hheeccccC
Confidence 876 899998654
No 228
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.57 E-value=5.9e-07 Score=65.20 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=50.7
Q ss_pred ceeeEEEEEEEecCC-----CCCeEEEeeCCe---e----c-C--------ccccccEEEee----cCeEEEeecCCCCC
Q psy535 70 FRLQGVVQCHIKANP-----TFQYVTWTKDKR---L----L-E--------PYQTKDIVVMQ----NGSLLFTRVNQNHQ 124 (460)
Q Consensus 70 ~g~~~~l~C~~~~~~-----~~~~v~W~~~~~---~----~-~--------~~~~~~~~~~~----~~~l~i~~~~~~d~ 124 (460)
.|++++|.|.....| ....|.|+|... + + . .....++.... +.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999987653 234699999531 1 0 0 00123444321 23699999999999
Q ss_pred eEEEEEEEcCCCCcceeeEEEEEe
Q psy535 125 GRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 125 G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
|.|+|.+.+..+.. ...+.|.|
T Consensus 81 G~Y~C~v~~~~~~~--~~~~~l~v 102 (106)
T cd05877 81 GRYRCEVIDGLEDE--SVVVALRL 102 (106)
T ss_pred EEEEEEEEecccce--EEEEEEEE
Confidence 99999998866654 45555554
No 229
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.57 E-value=3.6e-07 Score=66.82 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=51.8
Q ss_pred EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee---c---C------ccccccEEEee-----cCeEEEeecCCCC
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL---L---E------PYQTKDIVVMQ-----NGSLLFTRVNQNH 123 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~---~---~------~~~~~~~~~~~-----~~~l~i~~~~~~d 123 (460)
..|....+.+|++++|.|.+.+.+. ..+.|++.... . . .....++.+.. ...|.|.+++.+|
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~-~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTF-YYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCc-cEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 3566677889999999999987643 47999984311 0 0 01223443332 2369999999999
Q ss_pred CeEEEEEEEcCC
Q psy535 124 QGRYTCTPYNAH 135 (460)
Q Consensus 124 ~G~y~C~~~~~~ 135 (460)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999998654
No 230
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.55 E-value=1.2e-06 Score=63.23 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=51.0
Q ss_pred ceeeEEEEEEEecCCC-----------CCeEEEeeC--Ce-e--c---------CccccccEEEe------ecCeEEEee
Q psy535 70 FRLQGVVQCHIKANPT-----------FQYVTWTKD--KR-L--L---------EPYQTKDIVVM------QNGSLLFTR 118 (460)
Q Consensus 70 ~g~~~~l~C~~~~~~~-----------~~~v~W~~~--~~-~--~---------~~~~~~~~~~~------~~~~l~i~~ 118 (460)
.|++++|.|....... ...|.|+|- |. + + ......|+.+. .+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 3789999999865421 347999983 21 1 1 11112344443 245799999
Q ss_pred cCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
++.+|+|.|+|.+.++... .+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~--~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIED--NYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCC--ceeEEEEEEE
Confidence 9999999999999864433 4556666654
No 231
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.54 E-value=9e-07 Score=61.69 Aligned_cols=74 Identities=22% Similarity=0.405 Sum_probs=48.6
Q ss_pred eEEEEEEEecCCCCCeEEEeeCCe----ecC-----------ccccccEEE----eecCeEEEeecCCCCCeEEEEEEE-
Q psy535 73 QGVVQCHIKANPTFQYVTWTKDKR----LLE-----------PYQTKDIVV----MQNGSLLFTRVNQNHQGRYTCTPY- 132 (460)
Q Consensus 73 ~~~l~C~~~~~~~~~~v~W~~~~~----~~~-----------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~- 132 (460)
+++|.|.....+....|+|.|... .+. +....|+.. ..+.+|.|.+++.+|+|.|+|++.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 589999987655556799988321 111 111234443 225689999999999999999975
Q ss_pred cCCCCcceeeEEEE
Q psy535 133 NAHGTQGSSGQMEV 146 (460)
Q Consensus 133 ~~~g~~~~~~~~~v 146 (460)
.+.|..+++..+.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 45677655544443
No 232
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.54 E-value=6.3e-07 Score=61.78 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=52.9
Q ss_pred CCeEEEEeeeeccCCCC--CCeeEEEcCCCccCC---cc--cE-----EEecceEEEccccceeceEEEEEEecccceee
Q psy535 167 GESVDMHCEAQEAEGTQ--KPTITWQRRDGVALP---KN--RV-----KIVGGNITIEGLRRVDFGYYECVVSNEVATIV 234 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p--~~~~~W~~~~~~~~~---~~--~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 234 (460)
|+.+.|.|.+ .+.+ ...+.|...+..... .. +. ......|.|.+++..|+|.|+|.|.|..|...
T Consensus 1 Ge~~~L~C~~---~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~ 77 (86)
T cd05862 1 GEKLVLNCTA---RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK 77 (86)
T ss_pred CCcEEEEEEE---EeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence 6889999998 4443 458899875543211 01 11 11245799999999999999999999998888
Q ss_pred eeeEEEEe
Q psy535 235 QAAQLVVE 242 (460)
Q Consensus 235 ~~~~l~v~ 242 (460)
....|.|.
T Consensus 78 ~~t~~~V~ 85 (86)
T cd05862 78 NSTIVIVH 85 (86)
T ss_pred ccEEEEEe
Confidence 77777764
No 233
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.53 E-value=1.2e-06 Score=64.67 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=53.3
Q ss_pred cceeeeecceeeEEEEEEEecCCC---CCeEEEeeCCe------ecC------------ccccccEEEee-----cCeEE
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPT---FQYVTWTKDKR------LLE------------PYQTKDIVVMQ-----NGSLL 115 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~------~~~------------~~~~~~~~~~~-----~~~l~ 115 (460)
.|....+.+|++++|.|....... ...+.|++... .+. .....|+.+.. +.+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 355567788999999998865421 13599986211 110 00012222222 24699
Q ss_pred EeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 116 i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
|.+++.+|+|.|.|.+.+..........+.|.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 99999999999999999876543333344443
No 234
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.53 E-value=5.5e-07 Score=62.89 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=52.3
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCe--EEEeeCCeecCcccccc---EEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQY--VTWTKDKRLLEPYQTKD---IVVMQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~--v~W~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
+.+.+....+.+|+.++|.|.+.+..+++. |.|||++..+....... .......+|.+.....+|.-.|+|+|.+
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL 83 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence 445555555789999999999988766555 79999999886321111 0112233577765555555689999987
Q ss_pred CCCC
Q psy535 134 AHGT 137 (460)
Q Consensus 134 ~~g~ 137 (460)
....
T Consensus 84 ~l~~ 87 (100)
T cd05755 84 DLRP 87 (100)
T ss_pred ccCc
Confidence 6543
No 235
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.52 E-value=7.5e-07 Score=63.66 Aligned_cols=75 Identities=15% Similarity=0.328 Sum_probs=47.7
Q ss_pred eeEEEEEEEecCC--CCCeEEEeeCCee---------------cCccccccEEEe----ecCeEEEeecCCCCCeEEEEE
Q psy535 72 LQGVVQCHIKANP--TFQYVTWTKDKRL---------------LEPYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 72 ~~~~l~C~~~~~~--~~~~v~W~~~~~~---------------~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~ 130 (460)
++|+|.|.....+ ....|.|+|.... +.+....+.... .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987654 3346999995421 011112233322 245799999999999999999
Q ss_pred EEc-CCCCcceeeEEEEEe
Q psy535 131 PYN-AHGTQGSSGQMEVLV 148 (460)
Q Consensus 131 ~~~-~~g~~~~~~~~~v~v 148 (460)
+.. +.|.. .+.+.|.|
T Consensus 81 v~~~~~g~~--~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNR--QKVTTLTV 97 (98)
T ss_pred EEeCCCCcE--EEEEEEEe
Confidence 874 44554 44444443
No 236
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.52 E-value=1e-06 Score=61.29 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=56.3
Q ss_pred ccCCCCeEEEEeeeec--------cCCCCCCeeEEEcCCCccCC-------cccEEEecceEEEccccceeceEEEEEEe
Q psy535 163 QRKVGESVDMHCEAQE--------AEGTQKPTITWQRRDGVALP-------KNRVKIVGGNITIEGLRRVDFGYYECVVS 227 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~--------~~~~p~~~~~W~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 227 (460)
.+..|+.+.|.|.... ........+.|++++..... ..|+...+..|.|.++..+|+|.|+|++.
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r 90 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR 90 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence 5788999999999621 00222348999996422222 13667778899999999999999999999
Q ss_pred cccceeeeeeEEE
Q psy535 228 NEVATIVQAAQLV 240 (460)
Q Consensus 228 n~~g~~~~~~~l~ 240 (460)
|........+.|.
T Consensus 91 N~t~C~~~~i~l~ 103 (104)
T cd05896 91 NSTYCMKVSMSLT 103 (104)
T ss_pred CCCcceEEEEEEE
Confidence 9876665555443
No 237
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.52 E-value=6.4e-07 Score=65.44 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=50.3
Q ss_pred EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe--ecC--------------ccccccEEEee----cCeEEEeecC
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR--LLE--------------PYQTKDIVVMQ----NGSLLFTRVN 120 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~~--------------~~~~~~~~~~~----~~~l~i~~~~ 120 (460)
..|....+.+|++++|.|.+.+ +. ..+.|||... ... .....++.... ...|.|.+++
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~-~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GH-DNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CC-CEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 4667788899999999999977 43 4799999431 110 01122333222 2369999999
Q ss_pred CCCCeEEEEEEEcC
Q psy535 121 QNHQGRYTCTPYNA 134 (460)
Q Consensus 121 ~~d~G~y~C~~~~~ 134 (460)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999998764
No 238
>KOG4802|consensus
Probab=98.52 E-value=1.4e-06 Score=74.43 Aligned_cols=138 Identities=22% Similarity=0.338 Sum_probs=95.9
Q ss_pred CCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC---CCCCCCcEEEEccCCCCCCCcceEEEeec-c---eEEEE
Q psy535 289 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG---DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-N---GFVIS 361 (460)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G---~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~---~v~l~ 361 (460)
-.|..+.... ....+...++.|+.-|+|++.|.|..| -+.+|..+.....+.+|.+|.++++..+- + ...|-
T Consensus 197 thwQtv~~t~-~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~ 275 (516)
T KOG4802|consen 197 THWQTVEKTM-EENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVV 275 (516)
T ss_pred ccceeeeecC-CCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEE
Confidence 3566655433 344788999999999999999999876 45677777777777778899999987653 2 35667
Q ss_pred ecCCCCCCccceEEEEEEEEcC-CeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEE
Q psy535 362 WQPPLERASLIQYYLIKYRTDG-SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440 (460)
Q Consensus 362 W~~~~~~~~~i~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v 440 (460)
|-|+.. +-|+..|+|.|..-- +.... -.+.+++. -...++.|.+|.|+..|.+.|
T Consensus 276 w~P~~s-dlPv~~Yki~Ws~~v~s~k~~-----m~tks~~~------------------k~thq~si~~L~Pns~Y~Vev 331 (516)
T KOG4802|consen 276 WCPSKS-DLPVEKYKITWSLYVNSAKAS-----MITKSSYV------------------KDTHQFSIKELLPNSSYYVEV 331 (516)
T ss_pred eCCCCC-CCcceeeEEEeehhhhhhhhh-----ccccccee------------------eccchhhhhhcCCCCeEEEEE
Confidence 776654 779999999987421 10000 00011110 012244599999999999999
Q ss_pred EEeecCCCCCC
Q psy535 441 VGKNELGDGML 451 (460)
Q Consensus 441 ~a~n~~G~s~~ 451 (460)
.|....|.+..
T Consensus 332 qAi~y~g~~rL 342 (516)
T KOG4802|consen 332 QAISYLGSRRL 342 (516)
T ss_pred EEEEeccCccc
Confidence 99999998764
No 239
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.50 E-value=1e-06 Score=63.94 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=50.5
Q ss_pred ceeeEEEEEEEecCC-----CCCeEEEeeCC-----e-ecCc----------cccccEEE----eecCeEEEeecCCCCC
Q psy535 70 FRLQGVVQCHIKANP-----TFQYVTWTKDK-----R-LLEP----------YQTKDIVV----MQNGSLLFTRVNQNHQ 124 (460)
Q Consensus 70 ~g~~~~l~C~~~~~~-----~~~~v~W~~~~-----~-~~~~----------~~~~~~~~----~~~~~l~i~~~~~~d~ 124 (460)
.|++|+|.|.....+ ....|.|+|.. . .+.. ....++.. ..+.+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378999999987653 24579999962 1 1100 01112211 1234799999999999
Q ss_pred eEEEEEEEcCCCCcceeeEEEEEee
Q psy535 125 GRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 125 G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
|.|+|.+.+..+. ....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~--~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIED--EQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCc--eEEEEEEEEE
Confidence 9999999986544 4556666654
No 240
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.48 E-value=9.7e-07 Score=61.23 Aligned_cols=81 Identities=35% Similarity=0.529 Sum_probs=61.0
Q ss_pred CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC-eeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535 248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD-WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL 325 (460)
Q Consensus 248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~ 325 (460)
+|.++.. .....++.|+|.++. .....+..|.+.++...... +....... ....+.|.+|.+++.|.|++.|.|..
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPG-NETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEET-TSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred cCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeee-eeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 3455554 347889999999876 33444579999998877655 55554443 45589999999999999999999999
Q ss_pred CCCCC
Q psy535 326 GDGML 330 (460)
Q Consensus 326 G~~~~ 330 (460)
|.|.+
T Consensus 80 g~g~~ 84 (85)
T PF00041_consen 80 GEGPP 84 (85)
T ss_dssp EEEEE
T ss_pred cCcCC
Confidence 87754
No 241
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.47 E-value=1.7e-06 Score=61.24 Aligned_cols=74 Identities=19% Similarity=0.403 Sum_probs=52.1
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc--------CCcccEEEe-----cceEEEccccceeceEEEEEEecc
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA--------LPKNRVKIV-----GGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+..|+.++|.|.+ .+.+.+.+.|++.++.. ....++... ...|.|.+++..|+|.|.|.+.+.
T Consensus 8 ~v~~G~~v~L~C~~---~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 8 TVVEGGTATLKCRV---KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred EEcCCCCEEEEEEE---CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 57889999999998 66778899998533221 122344431 236899999999999999999876
Q ss_pred cceeeeeeEEE
Q psy535 230 VATIVQAAQLV 240 (460)
Q Consensus 230 ~g~~~~~~~l~ 240 (460)
.. ......|.
T Consensus 85 ~~-~~~~~~~~ 94 (95)
T cd05717 85 PV-QTAKATVT 94 (95)
T ss_pred CC-ceEEEEEE
Confidence 43 34444443
No 242
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.47 E-value=1.6e-06 Score=62.86 Aligned_cols=77 Identities=16% Similarity=0.291 Sum_probs=50.2
Q ss_pred eeeEEEEEEEecCCC---------CCeEEEeeC--Ceec------------CccccccEEEe------ecCeEEEeecCC
Q psy535 71 RLQGVVQCHIKANPT---------FQYVTWTKD--KRLL------------EPYQTKDIVVM------QNGSLLFTRVNQ 121 (460)
Q Consensus 71 g~~~~l~C~~~~~~~---------~~~v~W~~~--~~~~------------~~~~~~~~~~~------~~~~l~i~~~~~ 121 (460)
|++++|.|.....+. ...|.|+|. +... ......|.... .+.+|.|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 789999999876542 257999984 2110 11112344332 234699999999
Q ss_pred CCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
+|+|.|.|.+...... ..+.+.|.|.
T Consensus 82 sD~G~Y~C~v~~~~~~--~~~~v~l~V~ 107 (110)
T cd05878 82 SDSGVYRCEVMHGIED--EQDTVPLEVT 107 (110)
T ss_pred hhCEEEEEEEEeCCCc--ceEEEEEEEE
Confidence 9999999999875443 3455556553
No 243
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.47 E-value=8.9e-07 Score=57.43 Aligned_cols=58 Identities=28% Similarity=0.509 Sum_probs=43.5
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cc----eEEEccccceeceEEEEEE
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GG----NITIEGLRRVDFGYYECVV 226 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~----~l~i~~~~~~~~g~y~C~a 226 (460)
|+.++|.|.+. .+.+...+.|.+++............ .. .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVS--SGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEE--ESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecC--CCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 78999999983 57778899999966655433332221 12 2999999999999999986
No 244
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.47 E-value=8e-07 Score=62.43 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=53.9
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccc-ccEEEeecCeEEEeecCCCCCeEEEEEEEcC-
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT-KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA- 134 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~- 134 (460)
|.+...| ...+..|++|+|.|.... .. ..+.|+|+|........ ..........|.|.+++.+|+|.|+|.....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~-~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~ 78 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RF-DRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNH 78 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CC-CEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCC
Confidence 3343334 456778999999998755 22 37999998876432110 0000111236899999999999999997532
Q ss_pred --CCCcceeeEEEEE
Q psy535 135 --HGTQGSSGQMEVL 147 (460)
Q Consensus 135 --~g~~~~~~~~~v~ 147 (460)
......+..+.|.
T Consensus 79 ~~~~wS~~Sdpl~l~ 93 (94)
T cd05711 79 SLYEWSAPSDPLKIV 93 (94)
T ss_pred CCccccCCCCCeEEe
Confidence 2233344455443
No 245
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.46 E-value=7.4e-07 Score=62.02 Aligned_cols=68 Identities=18% Similarity=0.390 Sum_probs=49.3
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--------------cccEEEe-------cceEEEccccceeceE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--------------KNRVKIV-------GGNITIEGLRRVDFGY 221 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--------------~~~~~~~-------~~~l~i~~~~~~~~g~ 221 (460)
.+..|++++|.|.+ .+.+.+.+.|++.+..... ..++... ..+|.|.++..+|+|.
T Consensus 3 ~~~~G~~VtL~C~~---s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 3 LGKKGDTAELPCTA---SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred EeeCCCCEEEEEEe---CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence 46789999999998 6788899999864322211 1111111 1259999999999999
Q ss_pred EEEEEeccccee
Q psy535 222 YECVVSNEVATI 233 (460)
Q Consensus 222 y~C~a~n~~g~~ 233 (460)
|.|.+.|..++.
T Consensus 80 Y~C~v~~~~~~~ 91 (94)
T cd07690 80 YICEVEDKKEEV 91 (94)
T ss_pred EEEEECCccceE
Confidence 999999887654
No 246
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.46 E-value=1.4e-06 Score=62.48 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=47.4
Q ss_pred eeeEEEEEEEecCC--CCCeEEEeeCCe--ec---------C----ccccccEEEee------cCeEEEeecCCCCCeEE
Q psy535 71 RLQGVVQCHIKANP--TFQYVTWTKDKR--LL---------E----PYQTKDIVVMQ------NGSLLFTRVNQNHQGRY 127 (460)
Q Consensus 71 g~~~~l~C~~~~~~--~~~~v~W~~~~~--~~---------~----~~~~~~~~~~~------~~~l~i~~~~~~d~G~y 127 (460)
|++++|.|...... ....+.|++... .+ . .....|..+.. +.+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 57899999985321 223588887431 11 0 00112433321 24699999999999999
Q ss_pred EEEEEcCCCCcceeeEEEEEe
Q psy535 128 TCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 128 ~C~~~~~~g~~~~~~~~~v~v 148 (460)
+|.+.+..+. ....+.|.|
T Consensus 81 ~C~v~~~~~~--~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFY--EEATVELKV 99 (100)
T ss_pred EEEEecCCcE--EEEEEEEEE
Confidence 9999986655 445555544
No 247
>KOG0196|consensus
Probab=98.45 E-value=1.7e-05 Score=74.48 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=97.8
Q ss_pred ecceEEEccccceeceEEEEEEeccccee------eeeeEEEEecCCCCCCCcee-eeeecceEEEEeecCCCCCCCcee
Q psy535 205 VGGNITIEGLRRVDFGYYECVVSNEVATI------VQAAQLVVEGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQ 277 (460)
Q Consensus 205 ~~~~l~i~~~~~~~~g~y~C~a~n~~g~~------~~~~~l~v~~~~p~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~ 277 (460)
....+.+.++..+..+.|...|.|....- ...+.+......|.+-..+. ......+++|+|..+...++.+ .
T Consensus 396 t~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~i-l 474 (996)
T KOG0196|consen 396 TETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVI-L 474 (996)
T ss_pred ccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcc-e
Confidence 45578899999999999999999876432 22333433332333323333 4567789999999877666664 7
Q ss_pred eEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCC
Q psy535 278 NYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP 341 (460)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~ 341 (460)
.|.+.|++..... ..........++.+|.+|.|++.|.|+++|+...|.|..|....+.+...
T Consensus 475 dYEvky~ek~~~e-~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 475 DYEVKYYEKDEDE-RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred eEEEEEeeccccc-cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 9999998875422 22222233567899999999999999999999999999999999987753
No 248
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.42 E-value=4.5e-05 Score=66.21 Aligned_cols=163 Identities=11% Similarity=0.085 Sum_probs=97.7
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCC--CeEEEeeCC
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKDK 95 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~ 95 (460)
.|.|..++.+.+|.|+=...+..+.. ..+.+.|..+.+|.+.+.+.. +.+|+...-.|.+..+.++ ..+.||+||
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 59999999999999999988766542 345566666778887766543 6689999999999886443 459999999
Q ss_pred eecCccccc--cEEEeecCeEEEeecCCCCC------eEEEEEEE-cCCCC--cceeeEEEEEeeCCCceeeCCCccccc
Q psy535 96 RLLEPYQTK--DIVVMQNGSLLFTRVNQNHQ------GRYTCTPY-NAHGT--QGSSGQMEVLVRKPPAFTIKPEAMYQR 164 (460)
Q Consensus 96 ~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~------G~y~C~~~-~~~g~--~~~~~~~~v~v~~~p~~~~~~~~~~~~ 164 (460)
.++...... ......++--.+.-+..++. =..+|.+. ...+. ...++...-.|..+|.+++. .
T Consensus 261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~------F 334 (466)
T PHA03270 261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME------F 334 (466)
T ss_pred ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE------E
Confidence 988632211 11112222122223333332 25799874 33222 22333444445666766553 2
Q ss_pred CCCCeEEEEeeeeccCCCC-CCeeEEEcCCCc
Q psy535 165 KVGESVDMHCEAQEAEGTQ-KPTITWQRRDGV 195 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~ 195 (460)
..|. ..|.+ .--| ...+.|.-+++.
T Consensus 335 ~dG~---AVCtA---~CVPegV~l~W~V~D~~ 360 (466)
T PHA03270 335 GGDE---AVCTA---ACVPEGVTLAWLLGADP 360 (466)
T ss_pred eCCE---EEEec---cccCCCCEEEEEecCCC
Confidence 3333 23443 2222 348999875543
No 249
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.41 E-value=1.7e-06 Score=59.19 Aligned_cols=70 Identities=21% Similarity=0.459 Sum_probs=51.0
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc-eeeeeeEEEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA-TIVQAAQLVV 241 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g-~~~~~~~l~v 241 (460)
.+..|+.++|.|.+ .+.|.+.+.|++++ ..+. .....+.+..+...+.|.|+|.+.+..+ ..+..+.|.|
T Consensus 10 ~v~~g~~~~l~C~~---~~~p~~~~~w~~~~-~~~~-----~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 10 SVEEGDSVTLTCSV---SGNPPPQVQWYKNG-SPIN-----SSQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEETTSEEEEEEEE---ESSSSSEEEEEETT-EEEE-----EESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEeCCCcEEEEEEE---Ecccceeeeeeeee-eeee-----eeeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 46789999999998 58788999999843 3322 1222377788999999999999998654 3444455443
No 250
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.41 E-value=4.1e-06 Score=59.04 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=46.9
Q ss_pred eEEEEEEEecCCC---CCeEEEeeCC--e--e-----------cCccccccEEEee----cCeEEEeecCCCCCeEEEEE
Q psy535 73 QGVVQCHIKANPT---FQYVTWTKDK--R--L-----------LEPYQTKDIVVMQ----NGSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 73 ~~~l~C~~~~~~~---~~~v~W~~~~--~--~-----------~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~ 130 (460)
+++|.|.....++ ...|+|.+.. . . +.+....|+.... +.+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 5789998874322 2258998731 1 1 1111223444332 36899999999999999999
Q ss_pred EEc-CCCCcceeeEEEEEe
Q psy535 131 PYN-AHGTQGSSGQMEVLV 148 (460)
Q Consensus 131 ~~~-~~g~~~~~~~~~v~v 148 (460)
+.+ +.|. .++.+.|.|
T Consensus 82 v~t~P~g~--~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGN--RESQLNLTV 98 (99)
T ss_pred EEeCCCCC--eEEEEEEEE
Confidence 998 5665 445555544
No 251
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.40 E-value=1.5e-06 Score=62.97 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=49.8
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--ee---cC-------ccccccEEEeec---CeEEEeecCCCCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RL---LE-------PYQTKDIVVMQN---GSLLFTRVNQNHQ 124 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~~-------~~~~~~~~~~~~---~~l~i~~~~~~d~ 124 (460)
...|....+.+|++++|.|.+.+......+.|||.. .. +. .....++..... ..|.|.+++.+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 456677788999999999998765423469999832 11 10 001123333222 2599999999999
Q ss_pred eEEEEEEEc
Q psy535 125 GRYTCTPYN 133 (460)
Q Consensus 125 G~y~C~~~~ 133 (460)
|.|.|.+.+
T Consensus 84 g~Y~Ca~~~ 92 (106)
T cd04980 84 AVYYCQQYG 92 (106)
T ss_pred EEEEEEEeC
Confidence 999999864
No 252
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.40 E-value=2.9e-06 Score=60.26 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=46.4
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCee----cC-----------ccccccEEEe----ecCeEEEeecCCCCCeEEEEEE
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRL----LE-----------PYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~----~~-----------~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~ 131 (460)
|++++|.|..........|.|+|.... +. .....+.... .+.+|.|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998765433336999984211 00 0011122221 2346999999999999999998
Q ss_pred Ec-CCCCcceeeEEEEEe
Q psy535 132 YN-AHGTQGSSGQMEVLV 148 (460)
Q Consensus 132 ~~-~~g~~~~~~~~~v~v 148 (460)
.. +.|. .+..+.|.|
T Consensus 81 ~~~p~g~--~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGS--KSGTMCLTV 96 (97)
T ss_pred EeCCCCC--eeeEEEEEE
Confidence 64 4454 344444443
No 253
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.39 E-value=1.6e-06 Score=62.94 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=48.0
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCCee-----c----------CccccccEEEeec-----CeEEEeecCCCCCeE
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRL-----L----------EPYQTKDIVVMQN-----GSLLFTRVNQNHQGR 126 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~----------~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~ 126 (460)
.+.+|++++|.|.+........+.|++.... + .+....++....+ .+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 4678999999999987523447999994321 1 0111233333222 269999999999999
Q ss_pred EEEEEEcCCC
Q psy535 127 YTCTPYNAHG 136 (460)
Q Consensus 127 y~C~~~~~~g 136 (460)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 254
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.39 E-value=9e-07 Score=63.06 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.9
Q ss_pred cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCC
Q psy535 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGE 43 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 43 (460)
.+++|..+..||+|.|.+++.+|+|.|+|.+.+....
T Consensus 59 ~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~ 95 (105)
T cd05774 59 AYSGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQ 95 (105)
T ss_pred ccCCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCcc
Confidence 5689999999999999999999999999999987644
No 255
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.36 E-value=3.9e-06 Score=55.91 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=51.9
Q ss_pred eeecceeeEEEEEEEecCCC-CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 66 QYLPFRLQGVVQCHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
..+..|++++|+|.....+. .+.|+|+..+.... ........+|.+..+...|+|.++|.+... .....+.+
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~--~k~~~~~~ 81 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILNQDKKTLNLVQLGPNDSGTWDCIVSVN--SSEKTLKL 81 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eeccCCccEEEeceeCcccCCEEEEEEEEC--ceEEEEEe
Confidence 35678999999999865433 23699998766532 111234557999999999999999999744 22234444
Q ss_pred EEEe
Q psy535 145 EVLV 148 (460)
Q Consensus 145 ~v~v 148 (460)
.|.|
T Consensus 82 ~V~V 85 (88)
T cd07694 82 DIKV 85 (88)
T ss_pred eEEE
Confidence 4443
No 256
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.36 E-value=1.3e-06 Score=62.04 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=47.8
Q ss_pred cceeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc-ccEEEeecCe------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535 69 PFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT-KDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 69 ~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
..|+.++|.|.+.|. |+...++|+++|..+..... .......+++ |.|......|.|.|+|+|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 357899999999998 55568999999998864322 2222233333 555555556999999999876543
No 257
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.36 E-value=4.5e-06 Score=57.01 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=40.8
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC------eEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG------SLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
+.|.|.+.+..+++.|+|++++..+.... .......++ .|.+.....++.+.|+|+|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999998874445899999999875321 111111222 3555444556678999999987544
No 258
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.35 E-value=5.9e-06 Score=56.57 Aligned_cols=79 Identities=37% Similarity=0.706 Sum_probs=52.2
Q ss_pred CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcc
Q psy535 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGST 423 (460)
Q Consensus 345 ~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (460)
+|.++.+.... +++.|+|+++..... .+|.++|........ ..|...... ....
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~----------------------~~~~~~~~~-~~~~ 57 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEG----------------------SSWKEVNVT-PSST 57 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCC----------------------CccEEEEec-CCcc
Confidence 44456666554 489999997754332 778888875432000 112222221 1257
Q ss_pred eEEECCCCcCceEEEEEEEeecCCC
Q psy535 424 QITINRLTPATTYEFQVVGKNELGD 448 (460)
Q Consensus 424 ~~~i~~L~p~~~Y~~~v~a~n~~G~ 448 (460)
.+.+.+|.|++.|.|+|.|.+..|.
T Consensus 58 ~~~i~~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 58 SYTLTGLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred EEEEeCcCCCCEEEEEEEEEcccCC
Confidence 8999999999999999999998764
No 259
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.35 E-value=3.7e-06 Score=56.11 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=45.7
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCccc-------EEEecceEEEccccceeceEEEEEEeccccee
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-------VKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
++|.|... .+.|.+.++|++++. .+.... .....+.|.+......|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~--~skP~a~i~W~k~~~-~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSP--RSKPAATLRWYRDRK-ELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCC--CccCCCeEEEEECCE-ECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999985 889999999999554 433211 11233468888888999999999999987754
No 260
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.33 E-value=4.1e-06 Score=60.22 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=49.4
Q ss_pred eeeEEEEEEEecCC------CCCeEEEeeCC-----ee------------cCccccccEEEee------cCeEEEeecCC
Q psy535 71 RLQGVVQCHIKANP------TFQYVTWTKDK-----RL------------LEPYQTKDIVVMQ------NGSLLFTRVNQ 121 (460)
Q Consensus 71 g~~~~l~C~~~~~~------~~~~v~W~~~~-----~~------------~~~~~~~~~~~~~------~~~l~i~~~~~ 121 (460)
|.+++|.|...-.| ..+.|.|.|.. .. ..+....|..+.. +.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67899999965332 23579999741 11 1112233444433 34799999999
Q ss_pred CCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
+|+|.|+|.+...... ....+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~--~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGIND--EQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcc--cEEEEEEEEE
Confidence 9999999999874433 4555566553
No 261
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.33 E-value=4e-06 Score=61.90 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=50.3
Q ss_pred EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe-----ecC------------ccccccEEEeecC-----eEEEee
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR-----LLE------------PYQTKDIVVMQNG-----SLLFTR 118 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~~------------~~~~~~~~~~~~~-----~l~i~~ 118 (460)
..|....+.+|+++.|.|..........+.|++... .+. .....+..+..+. +|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 346677788999999999998212334799999322 111 0112233333332 499999
Q ss_pred cCCCCCeEEEEEEEcC
Q psy535 119 VNQNHQGRYTCTPYNA 134 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~ 134 (460)
++.+|+|.|.|.+...
T Consensus 86 l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESGGGEEEEEEEEEES
T ss_pred CCcCcCEEEEEEEEEC
Confidence 9999999999999876
No 262
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.33 E-value=6.3e-06 Score=56.24 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=41.8
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-Ce------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GS------LLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~------l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
+.|.|.+.+..++..|+|+++|..+.... .......+ ++ |.|.....+|...|+|+|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 68999998874445999999999876422 11222222 23 444455566779999999987543
No 263
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.32 E-value=6e-06 Score=55.96 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=50.2
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEec
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 228 (460)
.+..|+++.|.|.. ..+.+.+.|..++..+....++......|.|..++..|+|.|.|.+..
T Consensus 7 tv~~g~~v~L~C~~----~s~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 7 TVAPGADVVLPCQL----RSNLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEecCCCEEEECCC----CCCCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence 57789999999996 445779999996665544556666667788999999999999999873
No 264
>smart00409 IG Immunoglobulin.
Probab=98.32 E-value=9.9e-06 Score=56.05 Aligned_cols=76 Identities=30% Similarity=0.588 Sum_probs=56.3
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEec----ceEEEccccceeceEEEEEEecccceeeeee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
.+..|+.+.|.|.+ .+.+.+.+.|+++++..+. ..+..... ..|.|.++...|.|.|.|.+.+..+......
T Consensus 5 ~~~~g~~~~l~C~~---~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 5 TVKEGESVTLSCEV---SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEeCCCeEEEEEEE---ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 46789999999999 5557889999996233332 33333322 4699999999999999999998877766555
Q ss_pred EEEE
Q psy535 238 QLVV 241 (460)
Q Consensus 238 ~l~v 241 (460)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5544
No 265
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.32 E-value=9.9e-06 Score=56.05 Aligned_cols=76 Identities=30% Similarity=0.588 Sum_probs=56.3
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEec----ceEEEccccceeceEEEEEEecccceeeeee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
.+..|+.+.|.|.+ .+.+.+.+.|+++++..+. ..+..... ..|.|.++...|.|.|.|.+.+..+......
T Consensus 5 ~~~~g~~~~l~C~~---~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 5 TVKEGESVTLSCEV---SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEeCCCeEEEEEEE---ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 46789999999999 5557889999996233332 33333322 4699999999999999999998877766555
Q ss_pred EEEE
Q psy535 238 QLVV 241 (460)
Q Consensus 238 ~l~v 241 (460)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5544
No 266
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.32 E-value=7.2e-06 Score=58.44 Aligned_cols=74 Identities=16% Similarity=0.381 Sum_probs=46.3
Q ss_pred eEEEEEEEecCC--CCCeEEEeeCCe---e--cC-----------ccccccEEEee-----cCeEEEeecCCCCCeEEEE
Q psy535 73 QGVVQCHIKANP--TFQYVTWTKDKR---L--LE-----------PYQTKDIVVMQ-----NGSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 73 ~~~l~C~~~~~~--~~~~v~W~~~~~---~--~~-----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C 129 (460)
+++|.|...... ....|.|+|... + +. +....|..... +.+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 588999886543 233699998321 1 10 00112333322 4479999999999999999
Q ss_pred EEEc-CCCCcceeeEEEEEe
Q psy535 130 TPYN-AHGTQGSSGQMEVLV 148 (460)
Q Consensus 130 ~~~~-~~g~~~~~~~~~v~v 148 (460)
.+.+ +.|.. .+.+.|.|
T Consensus 82 ~v~~~p~g~~--~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNF--EAELVLTV 99 (100)
T ss_pred EEEeCCCCCe--eeEEEEEe
Confidence 9987 45553 55555544
No 267
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.32 E-value=9.1e-06 Score=62.56 Aligned_cols=86 Identities=15% Similarity=0.266 Sum_probs=55.3
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeCCeec----------CccccccEEEe----ecCeEEEeecCCCCCeEEEEE
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL----------EPYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~----------~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~ 130 (460)
...+.+|++++|.|..........+.|+|....+ .+....++... .+..|.|.++..+|+|.|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 3557889999999998522233479999963221 11112333321 345799999999999999998
Q ss_pred EEcC-CCCcceeeEEEEEeeCC
Q psy535 131 PYNA-HGTQGSSGQMEVLVRKP 151 (460)
Q Consensus 131 ~~~~-~g~~~~~~~~~v~v~~~ 151 (460)
..-- .| ...++...|.|..+
T Consensus 104 F~tfp~G-~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSK-NNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCC-CCceeEEEEEEEch
Confidence 7543 33 13566666666543
No 268
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.31 E-value=8.7e-06 Score=56.84 Aligned_cols=66 Identities=20% Similarity=0.381 Sum_probs=43.1
Q ss_pred eEEEEEEEecCCCCCeEEEeeCCe----ec-----------CccccccEEEe----ecCeEEEeecCCCCCeEEEEEEEc
Q psy535 73 QGVVQCHIKANPTFQYVTWTKDKR----LL-----------EPYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 73 ~~~l~C~~~~~~~~~~v~W~~~~~----~~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.++|.|..........|+|.|... .+ ......|+... .+.+|.|.+++.+|+|.|+|.+..
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 578999886543445688998421 11 11112344433 246899999999999999999865
Q ss_pred -CCCCc
Q psy535 134 -AHGTQ 138 (460)
Q Consensus 134 -~~g~~ 138 (460)
+.|..
T Consensus 82 ~P~g~~ 87 (96)
T cd05889 82 YPQGSW 87 (96)
T ss_pred CCCCCe
Confidence 34543
No 269
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.31 E-value=4.5e-06 Score=58.34 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=50.8
Q ss_pred CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEecceEEEccccceeceEEEEEEecc
Q psy535 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
|.+...|.. .+..|++++|.|.. ..+...+.|++++...... .......+.+.|.++...|+|.|+|...+.
T Consensus 3 P~L~a~p~~--vV~~G~~VtL~C~~----~~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEPSS--VVPLGKPVTLRCQG----PYGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecCCC--ccCCCCcEEEEEec----CCCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 455555544 57899999999985 4667789999854422111 111123456999999999999999999875
No 270
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.30 E-value=8.6e-06 Score=56.59 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=59.8
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCCccc--EEE-------ecceEEEccccceeceEEEEEEecccce
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKNR--VKI-------VGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~~~~--~~~-------~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
.+..|+++.|.|.+ .+.|.|. +.|.+.+........ ... ..+.|.+.++...+.|.|+|.|.|....
T Consensus 14 ~v~~gE~~~L~V~i---eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 14 FVNAGENLDLIVEY---EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred EEECCCCEEEEEEE---EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 68899999999999 7999997 999985442221111 111 1246999999999999999999999998
Q ss_pred eeeeeEEEEe
Q psy535 233 IVQAAQLVVE 242 (460)
Q Consensus 233 ~~~~~~l~v~ 242 (460)
.+.++.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888877664
No 271
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.30 E-value=1.6e-06 Score=61.17 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=38.4
Q ss_pred cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEE
Q psy535 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLN 52 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 52 (460)
...+|+.+..+++|.|.+++.+|+|.|+|.+....+....+.+.|.
T Consensus 46 ~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 46 AYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred CcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 4578999999999999999999999999999988766545555554
No 272
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.26 E-value=5.4e-06 Score=57.62 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=49.7
Q ss_pred ccCCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCcc--cEEE--ecceEEEccccceeceEEEEEEeccccee
Q psy535 163 QRKVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALPKN--RVKI--VGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~~--~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.+..|....|.|.-..+ ...+.+.+.|+++ +.++... +... ....|.|.++..+|+|.|+|.+.+..|..
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd-~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKD-SVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccC-CEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 45678899999973211 2346779999994 5555422 2222 23579999999999999999999986654
No 273
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.25 E-value=0.00013 Score=64.33 Aligned_cols=205 Identities=15% Similarity=0.186 Sum_probs=115.2
Q ss_pred cceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535 9 ETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 9 ~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
.++|.+-.. -.|.|.+++.+++|.|+=++.+.... .....+.|.+..+|.+.+.+. -+.+|+...-.|.+.
T Consensus 275 ~~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA 352 (566)
T PHA03269 275 KEKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVN 352 (566)
T ss_pred CceEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEee
Confidence 355555332 17999999999999998776644322 234556667777887766554 366899999999998
Q ss_pred cCCCC--CeEEEeeCCeecCccc-cccEEEeecCe------EEEeecCCCC--CeEEEEEEE-cCCCCcce--eeEEEEE
Q psy535 82 ANPTF--QYVTWTKDKRLLEPYQ-TKDIVVMQNGS------LLFTRVNQNH--QGRYTCTPY-NAHGTQGS--SGQMEVL 147 (460)
Q Consensus 82 ~~~~~--~~v~W~~~~~~~~~~~-~~~~~~~~~~~------l~i~~~~~~d--~G~y~C~~~-~~~g~~~~--~~~~~v~ 147 (460)
.+.++ ..+.|++||.++.... ........+|. |.+......| .=..+|.+. ...+.... ++...-.
T Consensus 353 ~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~ 432 (566)
T PHA03269 353 KYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPD 432 (566)
T ss_pred eecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCc
Confidence 86443 4599999998886421 12222233442 3332211111 234699874 43333322 3444445
Q ss_pred eeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCcccEEEec------ceEEEcc---ccc
Q psy535 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKNRVKIVG------GNITIEG---LRR 216 (460)
Q Consensus 148 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~------~~l~i~~---~~~ 216 (460)
|..+|.+++. ...|. ..|.+ .--|. ..+.|.-+++. ....+....+ +...|.+ ++.
T Consensus 433 VY~~PtISm~------FedG~---AVCtA---~CVP~~~V~l~WlVgD~p-~~~~~t~itG~C~ehPGLVNLRS~~pLS~ 499 (566)
T PHA03269 433 VYPFPNVSIE------IIDGH---IVCLA---KCVPRGVVHFNWWINDIP-IEHENSEILGVCDNNKRFVNLQSSCDTSE 499 (566)
T ss_pred cccCCeEEEE------EeCCE---EEEec---ccccCCCceEEEEecCCC-CCCccceeeccCCCCCCceeecccccccc
Confidence 6666766553 33333 23554 33333 47999986654 3222222211 1233333 333
Q ss_pred ee-ceEEEEEEec
Q psy535 217 VD-FGYYECVVSN 228 (460)
Q Consensus 217 ~~-~g~y~C~a~n 228 (460)
.| .-.|+|++..
T Consensus 500 ~dgpveYTCrL~G 512 (566)
T PHA03269 500 LDGPITYSCHLDG 512 (566)
T ss_pred cCCceeEEEEEee
Confidence 32 3589998763
No 274
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.25 E-value=0.00016 Score=63.64 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=96.6
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCC--CeEEEeeCC
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKDK 95 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~ 95 (460)
.|.|..++.+++|.|+=.+.+..+.. ....+.|..+.+|.+.+.+.. +.+|+...-.|.+..+.++ ..+.|++||
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 49999999999999987765654432 234444555778887766643 6689999999999886443 459999999
Q ss_pred eecCccc--cccEEEeecC------eEEEeecCC-CCCeEEEEEEE-cCCCCcce--eeEEEEEeeCCCceeeCCCcccc
Q psy535 96 RLLEPYQ--TKDIVVMQNG------SLLFTRVNQ-NHQGRYTCTPY-NAHGTQGS--SGQMEVLVRKPPAFTIKPEAMYQ 163 (460)
Q Consensus 96 ~~~~~~~--~~~~~~~~~~------~l~i~~~~~-~d~G~y~C~~~-~~~g~~~~--~~~~~v~v~~~p~~~~~~~~~~~ 163 (460)
.++.+.. ........++ +|.+..... +..=..+|.+. ...+.... ++...-.|..+|.+.+.
T Consensus 277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~------ 350 (486)
T PHA03273 277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT------ 350 (486)
T ss_pred eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE------
Confidence 9987322 1222222222 233333221 22346899874 33332222 23334445666666553
Q ss_pred cCCCCeEEEEeeeeccCCCCC--CeeEEEcCCC
Q psy535 164 RKVGESVDMHCEAQEAEGTQK--PTITWQRRDG 194 (460)
Q Consensus 164 ~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~ 194 (460)
...|. ..|.+ .--|. ..+.|.-++.
T Consensus 351 F~~G~---AVCtA---~CVP~egV~l~W~v~D~ 377 (486)
T PHA03273 351 VEDGD---AVCTA---KCVPSTGVFVSWSVNDH 377 (486)
T ss_pred EeCCE---EEEec---ccccCCCeeEEEEccCC
Confidence 23333 23555 34443 6899987553
No 275
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.23 E-value=1e-05 Score=55.07 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=41.9
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
++|.|.+.+..++..|+|+|+|..+............+ ..|.|.....+|...|+|+|.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 68999998865557899999999875321111111111 2466665556778899999987643
No 276
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.23 E-value=3.8e-06 Score=59.20 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=38.9
Q ss_pred CcccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535 6 GSLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54 (460)
Q Consensus 6 ~~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 54 (460)
.+..+|..+.. |++|.|.+++.+|+|.|+|.+.+......+..+.|.|+
T Consensus 47 ~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 47 PPYRERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred ccccCcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence 35668888764 36999999999999999999999543335778888873
No 277
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.22 E-value=1.9e-05 Score=56.85 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=48.8
Q ss_pred eeeEEEEEEEecCCC----------CCeEEEeeC-----Ce-----ec----------CccccccEEEe------ecCeE
Q psy535 71 RLQGVVQCHIKANPT----------FQYVTWTKD-----KR-----LL----------EPYQTKDIVVM------QNGSL 114 (460)
Q Consensus 71 g~~~~l~C~~~~~~~----------~~~v~W~~~-----~~-----~~----------~~~~~~~~~~~------~~~~l 114 (460)
|.+++|.|...-.|. ...|.|++- |. .+ ......|..+. .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 567899999874432 236999873 11 11 11123344443 23579
Q ss_pred EEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 115 ~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
.|.+++.+|+|.|+|++.+.... ....+.|.|
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~--~~~~v~L~V 113 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIED--TQDTVSLDV 113 (117)
T ss_pred EEcccccccCEEEEEEEEECCcc--cEEEEEEEE
Confidence 99999999999999999876544 344555554
No 278
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.20 E-value=7.4e-06 Score=60.52 Aligned_cols=72 Identities=11% Similarity=0.265 Sum_probs=49.3
Q ss_pred EcceeeeecceeeEEEEEEEec--CCCCCeEEEeeC--Ceec------C---------ccccccEEEeec-----CeEEE
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKA--NPTFQYVTWTKD--KRLL------E---------PYQTKDIVVMQN-----GSLLF 116 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~--~~~~~~v~W~~~--~~~~------~---------~~~~~~~~~~~~-----~~l~i 116 (460)
..|....+.+|++++|.|.+.+ .+. ..+.|||. +... . .....++....+ ..|.|
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~-~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 81 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFST-TYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI 81 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccc-cEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence 3566677889999999999876 343 37999993 2110 0 001234443322 35999
Q ss_pred eecCCCCCeEEEEEEEc
Q psy535 117 TRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~ 133 (460)
.+++.+|+|.|.|.+..
T Consensus 82 ~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 82 QNLEKEDSATYYCAYWE 98 (116)
T ss_pred EECCHHHCEEEEEEEec
Confidence 99999999999999864
No 279
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.17 E-value=3.5e-05 Score=53.43 Aligned_cols=67 Identities=10% Similarity=0.194 Sum_probs=46.0
Q ss_pred cceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCC
Q psy535 69 PFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 69 ~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~ 135 (460)
..|+..+|.|.+.|. |+...++|+|||..+............++++.+. .+...+...|.|++....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 346667999999994 6667899999999875322233333445555443 346678889999998643
No 280
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.17 E-value=3.9e-06 Score=59.40 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=38.7
Q ss_pred ccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535 8 LETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53 (460)
Q Consensus 8 ~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 53 (460)
..+|+.+..+ ++|.|.+++.+|+|.|.|.+.+..|......+.|.|
T Consensus 50 f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 50 YKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred ceeeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 3468888775 799999999999999999999888776677777766
No 281
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.16 E-value=8.8e-06 Score=60.07 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=50.3
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Cee---c-------CccccccEEEee-----cCeEEEeecCCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRL---L-------EPYQTKDIVVMQ-----NGSLLFTRVNQN 122 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~-----~~~l~i~~~~~~ 122 (460)
...|....+.+|++++|.|..........+.|+|. +.. + ......|+.... ..+|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 34566777899999999999876423346999983 211 0 011123444331 125999999999
Q ss_pred CCeEEEEEEEc
Q psy535 123 HQGRYTCTPYN 133 (460)
Q Consensus 123 d~G~y~C~~~~ 133 (460)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999875
No 282
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.15 E-value=2.3e-06 Score=57.61 Aligned_cols=72 Identities=29% Similarity=0.564 Sum_probs=45.4
Q ss_pred CceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccC-CcccEEEecceEEEccccceeceEEEEEEec
Q psy535 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVAL-PKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 228 (460)
|.+...+... ...+..++|.|.+ .+.+ .+.+.|+....... .........+.|.|.++...|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~--~~~~~~~~l~C~~---~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPV--VTSGGSVTLTCSA---EGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSE--EETTEEEEEEEEE---SSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCc--EeeceeEEEEEEE---ccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 4444444443 2223339999999 5555 88999991111111 1112223456799999999999999999986
No 283
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.13 E-value=8.3e-06 Score=56.89 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=37.9
Q ss_pred cccceEEEe----eCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535 7 SLETRVVIK----KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53 (460)
Q Consensus 7 ~~~~r~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 53 (460)
.+.+|..+. .+++|.|.+++.+|+|.|+|.+.+.......++..|.|
T Consensus 45 ~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 45 DYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred hhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 556788884 24699999999999999999998776555577888876
No 284
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.13 E-value=1.9e-05 Score=56.23 Aligned_cols=69 Identities=9% Similarity=0.115 Sum_probs=46.2
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCCee-----c------CccccccEEEeec-----CeEEEeecCCCCCeEEEEE
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRL-----L------EPYQTKDIVVMQN-----GSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~------~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~ 130 (460)
.+.+|++++|.|..........+.|+|.... + ......+.....+ ..|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 4678999999999865333346999985321 1 0112233433221 2599999999999999999
Q ss_pred EEcCC
Q psy535 131 PYNAH 135 (460)
Q Consensus 131 ~~~~~ 135 (460)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87543
No 285
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.13 E-value=4.1e-05 Score=53.74 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=41.9
Q ss_pred eeeEEEEEEEecC-CCCCeEEEeeCCeecCc-cccccEEEeecCeEEE---eecCCCCCeEEEEEEEcCC
Q psy535 71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEP-YQTKDIVVMQNGSLLF---TRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~~ 135 (460)
++.++|.|.+.|. |+...++|+++|..+.. ..........++++.+ ..+...+.+.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6789999999996 54458999999964322 1122233333444322 2345568899999998654
No 286
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.08 E-value=0.00057 Score=59.20 Aligned_cols=175 Identities=15% Similarity=0.238 Sum_probs=99.0
Q ss_pred CcccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCCcce-eeeEEEE-ecCCeeEEcceeeeecceeeEEEEE
Q psy535 6 GSLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNV-EFPAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 6 ~~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~l~v-~~~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
.+.+++|-+-.+. +|.|.++...|+|.|.-...+....... +.+.+.+ +-||.+.+.+.. +.+|+...-.|
T Consensus 190 ~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC 267 (490)
T PHA03271 190 SPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP--VLSGENYKASC 267 (490)
T ss_pred CCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc--cccCCCceEEE
Confidence 3456677775553 7999999999999776666665554322 2233333 346666665543 56899999999
Q ss_pred EEecCCCC--CeEEEeeCCeecCccccccEEE--eec-------CeEEEeecCCCCCeEEEEEEE-cCCCCc-ceeeEEE
Q psy535 79 HIKANPTF--QYVTWTKDKRLLEPYQTKDIVV--MQN-------GSLLFTRVNQNHQGRYTCTPY-NAHGTQ-GSSGQME 145 (460)
Q Consensus 79 ~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~--~~~-------~~l~i~~~~~~d~G~y~C~~~-~~~g~~-~~~~~~~ 145 (460)
.+..+.++ ..+.|++||.++.+........ .++ ++|.+.+...+..=..+|.+. ...... ..++...
T Consensus 268 ~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaat 347 (490)
T PHA03271 268 IVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAI 347 (490)
T ss_pred EeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccC
Confidence 99886443 4599999999886533222221 111 123333332223346899875 322111 1233333
Q ss_pred EEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCC
Q psy535 146 VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDG 194 (460)
Q Consensus 146 v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~ 194 (460)
-.|..+|.+.+. ...|.. .|.+ .--| ...+.|.-+++
T Consensus 348 P~VY~~P~ISv~------FedG~A---VCtA---~CVP~gV~lrWlVgD~ 385 (490)
T PHA03271 348 PTVYHHPRISLA------FKDGYA---ICTI---ECVPSGITVRWLVHDE 385 (490)
T ss_pred CccccCCeEEEE------EeCCEE---EEec---cccCCCcEEEEEecCC
Confidence 345556665543 333332 3443 2222 34899987554
No 287
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.06 E-value=5.1e-05 Score=54.88 Aligned_cols=78 Identities=26% Similarity=0.439 Sum_probs=53.3
Q ss_pred CCCeEEEEeeeeccCCC---------CCCeeEEEcCCCc--c--C------------CcccEEE-------ecceEEEcc
Q psy535 166 VGESVDMHCEAQEAEGT---------QKPTITWQRRDGV--A--L------------PKNRVKI-------VGGNITIEG 213 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~---------p~~~~~W~~~~~~--~--~------------~~~~~~~-------~~~~l~i~~ 213 (460)
.|++++|.|.+...... ..+.+.|++.... . + -..|+.+ .+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 38899999998521111 1468999974210 0 0 0124443 234799999
Q ss_pred ccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 214 LRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 214 ~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
++..|+|.|+|.+.+........+.|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998777777777777764
No 288
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.05 E-value=5.2e-05 Score=54.91 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=53.5
Q ss_pred CCCeEEEEeeeeccC---CCCCCeeEEEcCCCcc-------C---------C--cccEEEe-----cceEEEccccceec
Q psy535 166 VGESVDMHCEAQEAE---GTQKPTITWQRRDGVA-------L---------P--KNRVKIV-----GGNITIEGLRRVDF 219 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~---~~p~~~~~W~~~~~~~-------~---------~--~~~~~~~-----~~~l~i~~~~~~~~ 219 (460)
.|++++|.|.+.... +.....+.|++..... + . ..++... ..+|.|.+++..|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999873110 1234579999853210 0 0 1233322 23699999999999
Q ss_pred eEEEEEEecccceeeeeeEEEEec
Q psy535 220 GYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 220 g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888888888887764
No 289
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.03 E-value=6e-05 Score=54.42 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=43.3
Q ss_pred eeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeec-Ce------EEEeecCCCCCe-EEEEEEEcCCC
Q psy535 66 QYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN-GS------LLFTRVNQNHQG-RYTCTPYNAHG 136 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~------l~i~~~~~~d~G-~y~C~~~~~~g 136 (460)
..+..|+.++|.|.+.+. |+...++|+|||..+.... .......+ ++ |.+. ....|.| .|+|.+.+...
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~-~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQ-PNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccc-cceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCC
Confidence 334567789999999986 4446899999999975321 12211122 23 4334 3344444 59999987643
Q ss_pred C
Q psy535 137 T 137 (460)
Q Consensus 137 ~ 137 (460)
.
T Consensus 94 ~ 94 (111)
T cd05772 94 Q 94 (111)
T ss_pred C
Confidence 3
No 290
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.03 E-value=1.8e-05 Score=56.45 Aligned_cols=47 Identities=30% Similarity=0.411 Sum_probs=36.0
Q ss_pred cccceEEEee-----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535 7 SLETRVVIKK-----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53 (460)
Q Consensus 7 ~~~~r~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 53 (460)
+..+|.++.. +++|.|.+++.+|+|.|.|.+.+..+......+.|.|
T Consensus 48 ~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 48 AYEGRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CccCcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 3447777764 3599999999999999999999854433477777776
No 291
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.02 E-value=2.2e-05 Score=55.93 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=44.0
Q ss_pred eecceeeEEEEEEEecCC-CCCeEEEeeCCe--ecC----------ccccccEEEeec---CeEEEeecCCCCCeEEEEE
Q psy535 67 YLPFRLQGVVQCHIKANP-TFQYVTWTKDKR--LLE----------PYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~~--~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~ 130 (460)
.+.+|++++|.|.+.+.. ....+.||+... ... .....++....+ ..|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 367899999999987641 223599998321 110 001223333222 2599999999999999999
Q ss_pred EEc
Q psy535 131 PYN 133 (460)
Q Consensus 131 ~~~ 133 (460)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
No 292
>KOG4367|consensus
Probab=98.01 E-value=6.8e-06 Score=70.68 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=68.5
Q ss_pred CCCCCCCcceEEEee--cceEEEEecCCCCCCccceEEEEEEEEcC--CeeeeccccCCCCcccccccceecCceeeeee
Q psy535 340 GPKPGPPRNVSVTEV--NNGFVISWQPPLERASLIQYYLIKYRTDG--SWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415 (460)
Q Consensus 340 ~~~P~~p~~~~~~~~--~~~v~l~W~~~~~~~~~i~~y~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (460)
.++|+.|..-.-..- .++++|.|..|...+.+..||.++....+ .|...-.
T Consensus 435 s~vpatpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy~------------------------- 489 (699)
T KOG4367|consen 435 SPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYV------------------------- 489 (699)
T ss_pred CCCCCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEEe-------------------------
Confidence 345655543332222 35999999987776889999999987632 2332222
Q ss_pred ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
..++..+|.||--++.|..||.|+|+.|.|++|+.+...|
T Consensus 490 ----g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~lqt 529 (699)
T KOG4367|consen 490 ----GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQT 529 (699)
T ss_pred ----cCceeEEecceecchhHHHHHHHhhccCCCcccceeEeee
Confidence 4568899999999999999999999999999999887766
No 293
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.00 E-value=1.8e-05 Score=56.18 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=43.6
Q ss_pred eecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc-cccEEEeecCeEE------EeecCCCCCeEEEEEEEcCC
Q psy535 67 YLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLL------FTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~l~------i~~~~~~d~G~y~C~~~~~~ 135 (460)
....++.++|.|.+.|. |....|+|++||..+.... ........++++. +......+...|+|++....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 34456779999999985 5466899999999875321 1122222244433 33333345688999998754
No 294
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.98 E-value=8.6e-05 Score=53.10 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=28.9
Q ss_pred ceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
.+|.|.+++..|+|.|+|.+.+..+.....+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 36999999999999999999987776666666654
No 295
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.97 E-value=0.00012 Score=50.98 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=46.3
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc--------CCcccEEEec--c---eEEEccccceeceEEEEEEec
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA--------LPKNRVKIVG--G---NITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~--~---~l~i~~~~~~~~g~y~C~a~n 228 (460)
.+..|++++|.|.+ .+.....+.|++.+... ....|+.... + +|.|.+++.+|.|.|.|.+..
T Consensus 8 tv~~G~ta~L~C~v---~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 8 TVVEGEVAIISCRV---KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred EEcCCCcEEEEEEE---ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 67899999999999 55555677887655322 2344554332 2 589999999999999999874
No 296
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.97 E-value=9.4e-05 Score=53.56 Aligned_cols=78 Identities=26% Similarity=0.505 Sum_probs=52.4
Q ss_pred CCCeEEEEeeeeccC---CCCCCeeEEEcCC--Cc-c--C---Ccc----------cEEE-----ecceEEEccccceec
Q psy535 166 VGESVDMHCEAQEAE---GTQKPTITWQRRD--GV-A--L---PKN----------RVKI-----VGGNITIEGLRRVDF 219 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~---~~p~~~~~W~~~~--~~-~--~---~~~----------~~~~-----~~~~l~i~~~~~~~~ 219 (460)
.|++++|.|.+.... ......+.|++.. .. . + ... ++.. ...+|.|.+++..|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 388999999984211 1235699999852 10 0 0 010 1111 134799999999999
Q ss_pred eEEEEEEecccceeeeeeEEEEec
Q psy535 220 GYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 220 g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998877777777777753
No 297
>KOG4258|consensus
Probab=97.95 E-value=0.00013 Score=69.08 Aligned_cols=126 Identities=21% Similarity=0.377 Sum_probs=90.7
Q ss_pred eecceEEEEeecCCCCCCCceeeEEEEEEecC--------------CCCeeeeeccCC-------CCceEEEccCccCcc
Q psy535 256 ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG--------------NKDWLPIPVTPP-------GSTQITINRLTPATT 314 (460)
Q Consensus 256 ~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~i~~l~~~~~ 314 (460)
...+++.++|..-......-..+|.+.|+..- ...|....+..+ ......+.+|+|.+.
T Consensus 499 ~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~Tq 578 (1025)
T KOG4258|consen 499 TSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPWTQ 578 (1025)
T ss_pred eecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCccce
Confidence 34568999998543332222357888887642 234555544332 122577889999999
Q ss_pred EEEEEEEEcC--CCCC--CCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEE
Q psy535 315 YEFQVVGKNE--LGDG--MLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRT 381 (460)
Q Consensus 315 ~~~~~~a~n~--~G~~--~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~ 381 (460)
|.|.+.+... .+.. ..|...-++|....|.||..+-....+ +.|.|+|.+|..+++.++.|.|.|..
T Consensus 579 YAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer 650 (1025)
T KOG4258|consen 579 YAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWER 650 (1025)
T ss_pred eEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEe
Confidence 9999988622 2221 357778899999999999887776666 48999999999999999999999976
No 298
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.93 E-value=0.00014 Score=50.68 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=41.3
Q ss_pred ceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCC
Q psy535 70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~ 135 (460)
.++..+|.|.+.|. |....++|.+||..+... .........++++.+. .+...+...|+|.+....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 35567999999995 666789999999987531 1112222333432221 233456779999998653
No 299
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.92 E-value=0.00019 Score=50.25 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=43.4
Q ss_pred ceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCCC
Q psy535 70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~g 136 (460)
.|+.++|.|.+.|. |+...++|++||..+... .........++++.+. .+...+...|+|.+.....
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 57789999999995 555579999999987542 1122222333333321 2344567789999987543
No 300
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.91 E-value=8.7e-05 Score=50.77 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=41.0
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE----------ecceEEEccccceeceEEEEEEecccceee
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI----------VGGNITIEGLRRVDFGYYECVVSNEVATIV 234 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 234 (460)
+.|.|.+. .+.|.+.+.|+++ +..+....... ..+.|.+......+.+.|+|.|.|......
T Consensus 2 ~~L~C~v~--g~~P~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~ 73 (82)
T cd05759 2 YNLTCRAR--GAKPAAEIIWFRD-GEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG 73 (82)
T ss_pred EEEEEEEe--CccCCCEEEEEEC-CEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence 68999993 3478889999994 44443322111 112466666666778899999998765443
No 301
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.89 E-value=4.7e-05 Score=53.19 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=34.2
Q ss_pred CcccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeE
Q psy535 6 GSLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAY 50 (460)
Q Consensus 6 ~~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 50 (460)
.+..+|+.+.. +++|.|.+++.+|+|.|+|.+.........+.++
T Consensus 44 ~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~ 92 (96)
T cd05889 44 DKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE 92 (96)
T ss_pred ccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence 35668888864 4799999999999999999998765443344443
No 302
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.88 E-value=0.00012 Score=51.33 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=47.0
Q ss_pred CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc----ccEEEecceEEEccccceeceEEEEEEe
Q psy535 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK----NRVKIVGGNITIEGLRRVDFGYYECVVS 227 (460)
Q Consensus 152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 227 (460)
|.+...|.. .+..|++++|.|... .....+.|++++...... .........+.|..++..|+|.|+|...
T Consensus 2 P~l~a~p~~--vV~~G~~VTL~C~~~----~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPSP--VVPSGENVTLQCHSD----IRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecCCC--ccCCCCeEEEEEecC----CCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 444444544 578999999999862 245589999965432110 0001123478999999999999999975
No 303
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.87 E-value=4.9e-05 Score=54.21 Aligned_cols=47 Identities=30% Similarity=0.409 Sum_probs=34.9
Q ss_pred cccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535 7 SLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53 (460)
Q Consensus 7 ~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 53 (460)
...+|..+.. +.+|.|.+++.+|+|.|.|.+...........+.|.|
T Consensus 47 ~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 47 SYEGRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CcCceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 3467777764 4599999999999999999998643333366666665
No 304
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.86 E-value=0.076 Score=58.58 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=91.6
Q ss_pred CCCeeEEEEEE--eCCCCcceeeeEEEEecCCe---eEEcceee-eecceeeEEEEEEEecCCCCCeEEEeeCCeecCcc
Q psy535 28 DDSGLYMCEVS--NGIGEPQAAQAYLNVEFPAK---VTFTPTVQ-YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY 101 (460)
Q Consensus 28 ~d~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p~---~~~~~~~~-~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~ 101 (460)
...|.|+-... |..+.. .....+.|..|.. +....... .+..+..+.+.=...+. +..+.|..++......
T Consensus 1397 ~~pGtYTVTLTVtN~~gs~-T~s~~I~V~~Pv~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt--~~Sy~WdFGDGstst~ 1473 (2740)
T TIGR00864 1397 NDPGCYLVTVAASNNISAA-NDSALIEVLEPVGATSFKHNGSHGNNLELGQPYLFSAFGRAR--NASYLWDFGDGGLLEG 1473 (2740)
T ss_pred CCCceEEEEEEEECCCcce-eeeeEEEEecCCCcceeeecCCcccccccCcceEEeecCCCC--ceEEEEECCCCCccCc
Confidence 35688876554 444432 4555667765422 21111111 12223333333222332 3468888755432110
Q ss_pred ccccEEEeecCeEEEeecCCCCCeEEEE--EEEcCCCCcceeeEEEEEeeCCCc-eeeCCCcccccCCCCeEEEEeeeec
Q psy535 102 QTKDIVVMQNGSLLFTRVNQNHQGRYTC--TPYNAHGTQGSSGQMEVLVRKPPA-FTIKPEAMYQRKVGESVDMHCEAQE 178 (460)
Q Consensus 102 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C--~~~~~~g~~~~~~~~~v~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~ 178 (460)
.+ ........|.|+- .+.|..|..... +.|.|..|.. +.+.+... .+..+..+.+.-...
T Consensus 1474 --------qn-----ptHtY~~~GtYtVtLTvtN~~Gsst~T--~~VtV~~pV~~~tinas~~-~vpl~~sV~Fta~~s- 1536 (2740)
T TIGR00864 1474 --------PE-----ILHAFNSPGDFNIRLAAANEVGKNEAT--LNVAVKARVRGLTINASLT-NVPLNGSVHFEAHLD- 1536 (2740)
T ss_pred --------cc-----eEEEcCCCceEEEEEEEECCCCceEEE--EEEEEeccccceEEcCCCc-cccccceEEEEEEcc-
Confidence 01 1123456899976 567877775444 4455544432 33333333 344566677764431
Q ss_pred cCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEE--EEEecccceeeeeeEEEEec
Q psy535 179 AEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYE--CVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 179 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~--C~a~n~~g~~~~~~~l~v~~ 243 (460)
.|. ...+.|...++...... +.+. +. .....|.|+ ..+.|..|....+..+.|..
T Consensus 1537 -~Gs-~v~ysWdFGDg~ts~~~-----npt~-~y--TY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~ 1593 (2740)
T TIGR00864 1537 -AGD-DVRFSWILCDHCTPIFG-----GNTI-FY--TFRSVGTFNIIVTAENDVGAAQASIFLFVLQ 1593 (2740)
T ss_pred -CCC-ceeEEEEeCCCCccccC-----CCce-EE--eecCCceEEEEEEEecCCCccceeEEEEEee
Confidence 343 45899998665322111 1110 11 112346665 56779999887777777664
No 305
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.85 E-value=4.9e-05 Score=53.29 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=44.8
Q ss_pred cceeeeecceeeEEEEEEEecC--CCCCeEEEeeCCeecCccccccEEEeecCeEEEee---cCC---CCCeEEEEEEEc
Q psy535 62 TPTVQYLPFRLQGVVQCHIKAN--PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR---VNQ---NHQGRYTCTPYN 133 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~---~d~G~y~C~~~~ 133 (460)
.|....+..++.++|.|.+.|. |+...|+|+|++...............++++.+.. +.. .+...|+|.+..
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3433445568889999999998 66677999998743321111122223444444432 222 245679999987
Q ss_pred CCC
Q psy535 134 AHG 136 (460)
Q Consensus 134 ~~g 136 (460)
...
T Consensus 85 ~~l 87 (96)
T cd07696 85 PDL 87 (96)
T ss_pred CCC
Confidence 543
No 306
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.85 E-value=9.7e-05 Score=51.50 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=41.9
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
|+.+.|.|.+.+..+++.|+|+.++..+............+ +.|.+......+...++|.|.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 67999999887665556899999988772111111111111 2466665555677889999988654
No 307
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.84 E-value=5.9e-05 Score=54.61 Aligned_cols=66 Identities=15% Similarity=0.297 Sum_probs=43.1
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCCee---c--------Cc---------cccccEEE--eec---CeEEEeecCC
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRL---L--------EP---------YQTKDIVV--MQN---GSLLFTRVNQ 121 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~---~--------~~---------~~~~~~~~--~~~---~~l~i~~~~~ 121 (460)
.+.+|++++|.|.+.+......+.||+-... . .. ....+... ..+ ..|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 4678999999999876433346999983211 0 00 00123322 111 2499999999
Q ss_pred CCCeEEEEEEE
Q psy535 122 NHQGRYTCTPY 132 (460)
Q Consensus 122 ~d~G~y~C~~~ 132 (460)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
No 308
>KOG0613|consensus
Probab=97.84 E-value=0.00027 Score=70.35 Aligned_cols=162 Identities=12% Similarity=0.018 Sum_probs=96.3
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
....++...+.|.+.+...+ ...|+.+....... .....++.|.+....+.+.|+|...+..+.........+
T Consensus 240 ~t~e~s~~~i~~~l~~~~G~-~~~~~~~~l~e~~~------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~ 312 (1205)
T KOG0613|consen 240 VTLEASDRKIQLTLRAPRGP-YSAHILGYLIEQRK------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEA 312 (1205)
T ss_pred cccchhheeeeEEeecCCCc-hHHHHhcchhhhcc------cCCCccccccccCCccccceeeecccCCcccceeeeEEe
Confidence 34456666778887776554 56776655443321 122335677777778888899988877776654444333
Q ss_pred Eee--------------CCCceeeCCC--cccccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCCcc------cEE
Q psy535 147 LVR--------------KPPAFTIKPE--AMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKN------RVK 203 (460)
Q Consensus 147 ~v~--------------~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~~~------~~~ 203 (460)
.+. .++...+... .......+..+++.|.. .+.+.+. +.|+++........ ...
T Consensus 313 ~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1205)
T KOG0613|consen 313 PIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL---SGTQKPDEAQGYHGEEVSSESLGALPCPVGT 389 (1205)
T ss_pred eccccccCchhhhhhccCCccccccccccceeccccCcceeecccc---cCCcCCchheeeccccccccccccccccccc
Confidence 322 1111111110 11135567789999998 6777775 99998443222111 111
Q ss_pred EecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535 204 IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 204 ~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
.....+.+..+...+.+.+.|.+.|..|.......
T Consensus 390 ~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~ 424 (1205)
T KOG0613|consen 390 VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAE 424 (1205)
T ss_pred ccCcchhhhhcCcccccccccceeccCCcccccch
Confidence 12335777888888999999999999887654443
No 309
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.84 E-value=0.0002 Score=51.96 Aligned_cols=78 Identities=26% Similarity=0.455 Sum_probs=51.7
Q ss_pred CCCeEEEEeeeeccCC-------CCCCeeEEEcCCC-ccC---------------CcccEEE-------ecceEEEcccc
Q psy535 166 VGESVDMHCEAQEAEG-------TQKPTITWQRRDG-VAL---------------PKNRVKI-------VGGNITIEGLR 215 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~-------~p~~~~~W~~~~~-~~~---------------~~~~~~~-------~~~~l~i~~~~ 215 (460)
.|++++|.|.+..... .....+.|++... ... -..|+.. ...+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3889999999842111 1136799998521 110 0123333 12469999999
Q ss_pred ceeceEEEEEEecccceeeeeeEEEEec
Q psy535 216 RVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 216 ~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
..|+|.|.|.+..........+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999988766677777777654
No 310
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.84 E-value=0.00031 Score=47.02 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=51.4
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
.+..|++++|+|.... ...|.+.++|...++.... .......+|.+..+...|+|.++|.+....-.......+.|
T Consensus 10 ~lL~G~sLtLtl~~~s-~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 10 HVLSGTNLTLTLHGSS-NSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred eeecCCcEEEEEecCC-CCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 5788999999999831 1234559999975554321 11123457999999999999999999755444444444444
No 311
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.82 E-value=0.00014 Score=53.00 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=47.5
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCc--c------------CCcccEEEe------cceEEEccccceeceEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV--A------------LPKNRVKIV------GGNITIEGLRRVDFGYY 222 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~--~------------~~~~~~~~~------~~~l~i~~~~~~~~g~y 222 (460)
.+..|++++|.|.+ .+.+...+.|++.... . ....++.+. ...|.|.+++.+|+|.|
T Consensus 9 ~~~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 9 SVQEGENVTLNCNY---STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred EEcCCCCEEEEEEE---CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 68899999999998 4557789999974321 0 112334332 23699999999999999
Q ss_pred EEEEeccc
Q psy535 223 ECVVSNEV 230 (460)
Q Consensus 223 ~C~a~n~~ 230 (460)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 99998654
No 312
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.82 E-value=4.6e-05 Score=55.57 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=30.0
Q ss_pred cccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC
Q psy535 7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG 42 (460)
Q Consensus 7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~ 42 (460)
...+|+.+..+ .+|.|.+++.+|+|.|+|.+.|..+
T Consensus 64 ~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 64 PFKERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred CccCceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 44578887543 5999999999999999999998765
No 313
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.81 E-value=7.6e-05 Score=49.34 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=43.2
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCcccc-----ccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQT-----KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
+.|.|.+.+ ++...+.|++++........ ..........|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASG-PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecC-CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999988 44457999998876543211 11122233469999999999999999998755
No 314
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.81 E-value=0.00017 Score=50.39 Aligned_cols=73 Identities=8% Similarity=0.035 Sum_probs=45.0
Q ss_pred eeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 72 LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 72 ~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
....+.|.+.+..+++.|+|+++..... ........+ +.|.+.....+|...|+|++.+..-.......++
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~---~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEA---ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcc---eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3467899997665566899999721110 011111122 2477766666777889999998766555555555
Q ss_pred EE
Q psy535 146 VL 147 (460)
Q Consensus 146 v~ 147 (460)
|.
T Consensus 93 L~ 94 (95)
T cd05719 93 LN 94 (95)
T ss_pred ee
Confidence 53
No 315
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.80 E-value=0.00014 Score=48.61 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=39.7
Q ss_pred EEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535 74 GVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 74 ~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
++|.|.+.+. |+...++|+|+|.++... .........+++ |.|......+...|+|++.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999996 444689999999874321 111112223333 5554445577789999997643
No 316
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.80 E-value=0.00017 Score=53.31 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=47.6
Q ss_pred cceeeeecceeeEEEEEEEecCC-----CCCeEEEeeCCe-----e-cC---------ccccccEEEee-----cCeEEE
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-----TFQYVTWTKDKR-----L-LE---------PYQTKDIVVMQ-----NGSLLF 116 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-----~~~~v~W~~~~~-----~-~~---------~~~~~~~~~~~-----~~~l~i 116 (460)
.|....+.+|++|+|.|...... ....+.|++... . +. .....|+.... +..|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 45667788999999999875322 123599998421 1 10 01112333321 125999
Q ss_pred eecCCCCCeEEEEEEEcC
Q psy535 117 TRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~~ 134 (460)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998653
No 317
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.80 E-value=0.00011 Score=54.07 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=47.0
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeC---Cee--c---C---------ccccccEEEeec---C--eEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD---KRL--L---E---------PYQTKDIVVMQN---G--SLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~---~~~--~---~---------~~~~~~~~~~~~---~--~l~i~~ 118 (460)
.|....+.+|++++|.|...+.. ....+.|||- +.+ + . .....++....+ . .|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 45667788999999999876432 1236999982 222 1 0 001123333211 1 599999
Q ss_pred cCCCCCeEEEEEEEc
Q psy535 119 VNQNHQGRYTCTPYN 133 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~ 133 (460)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998764
No 318
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.80 E-value=0.00063 Score=47.52 Aligned_cols=74 Identities=41% Similarity=0.646 Sum_probs=55.0
Q ss_pred cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCC
Q psy535 258 EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 332 (460)
Q Consensus 258 ~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~ 332 (460)
..++.+.|.++...... ...|.++++......|..+.........+.+.+|.++..|.+++.|.+..|.+..+.
T Consensus 14 ~~~~~v~W~~~~~~~~~-~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~ 87 (93)
T cd00063 14 STSVTLSWTPPEDDGGP-ITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSE 87 (93)
T ss_pred CCEEEEEECCCCCCCCc-ceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCCCcc
Confidence 57999999976443222 368888888765556665554323567899999999999999999999887776554
No 319
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.79 E-value=0.099 Score=57.75 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=133.7
Q ss_pred CCCeeEEEE--EEeCCCCcceeeeEEEEecCC-eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc
Q psy535 28 DDSGLYMCE--VSNGIGEPQAAQAYLNVEFPA-KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK 104 (460)
Q Consensus 28 ~d~G~Y~C~--~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~ 104 (460)
...|.|+-. |.|..|.. .....+.|..|. .+.+.+....+..+.++.|.-...... +..+.|..++.........
T Consensus 1481 ~~~GtYtVtLTvtN~~Gss-t~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs-~v~ysWdFGDg~ts~~~np 1558 (2740)
T TIGR00864 1481 NSPGDFNIRLAAANEVGKN-EATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD-DVRFSWILCDHCTPIFGGN 1558 (2740)
T ss_pred CCCceEEEEEEEECCCCce-EEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC-ceeEEEEeCCCCccccCCC
Confidence 347888665 45666764 566677776543 355556656666777787774433333 3379998865422110111
Q ss_pred cEEEeecCeEEEeecCCCCCeEEEE--EEEcCCCCcceeeEEEEEeeCCCce-eeCCC------------cccccCCCCe
Q psy535 105 DIVVMQNGSLLFTRVNQNHQGRYTC--TPYNAHGTQGSSGQMEVLVRKPPAF-TIKPE------------AMYQRKVGES 169 (460)
Q Consensus 105 ~~~~~~~~~l~i~~~~~~d~G~y~C--~~~~~~g~~~~~~~~~v~v~~~p~~-~~~~~------------~~~~~~~g~~ 169 (460)
+. .-.....|.|+- .+.|..|....+..+.| +.+... .+... ....+..+..
T Consensus 1559 --------t~---~yTY~spGtYtVtLTvtN~~Gs~~~T~~i~V--~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~ 1625 (2740)
T TIGR00864 1559 --------TI---FYTFRSVGTFNIIVTAENDVGAAQASIFLFV--LQEIEGLQILGETAEGGGGGVQELDGCYFETNHT 1625 (2740)
T ss_pred --------ce---EEeecCCceEEEEEEEecCCCccceeEEEEE--eecccceEEEeecccccCCcccccccceeccCCE
Confidence 10 112345788875 56788888755554444 433211 11100 0012344555
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEE--EEEEecccceeeeeeEEEEecCCCC
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYY--ECVVSNEVATIVQAAQLVVEGTQPH 247 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y--~C~a~n~~g~~~~~~~l~v~~~~p~ 247 (460)
+.|.-... .| ....+.|...++...........+....+. ..+.|.| +..+.|..|....+..+.+..+...
T Consensus 1626 v~l~~~~~--~G-TnvsysW~~~~~n~~dg~~~~~tGk~~~vt---~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~ 1699 (2740)
T TIGR00864 1626 VQFHAGFK--DG-TNLSFSWNAILDNEPDGPAFAGSGKGAKLN---PLEAGPCDIFLQAANLLGQATADCTIDFLEPAGN 1699 (2740)
T ss_pred EEeeeccC--CC-CeeEEEEEEecCCCCCCccccccCceeEEe---cCCCceEEEEEEEeecccceeeEEEEEEEEEcCc
Confidence 66655542 33 345777865211100011111112222222 2334554 5677899999888877777653221
Q ss_pred CCCcee--eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535 248 APYNIT--GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL 325 (460)
Q Consensus 248 ~p~~~~--~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~ 325 (460)
.-.... .......+.++-. ...+.. ..|.+.+.++. .|... .. ...........|.+.+.|.|..
T Consensus 1700 L~L~aS~~~aavn~~V~fs~~--lt~GS~--vty~W~~gdG~--s~~~s-----~p--~~tHtf~~~G~y~VtVta~N~v 1766 (2740)
T TIGR00864 1700 LMLQASDNPAAVNALINLSAE--LAEGSG--LQYRWFLEEGD--DLETS-----EP--FMSHSFPSAGLHLVTMKAFNEL 1766 (2740)
T ss_pred eEEeccCCcccCCCeEEEEEE--ecCCCC--cEEEEEECCCC--CcccC-----CC--ceEEEccCCceEEEEEEEEccc
Confidence 110001 1112233444322 223333 23433333321 11110 11 1112244456678899999999
Q ss_pred CCCCCCCcEEEE
Q psy535 326 GDGMLSNIVVVK 337 (460)
Q Consensus 326 G~~~~s~~~~~~ 337 (460)
|....+..+.+.
T Consensus 1767 ss~~~s~~V~Vq 1778 (2740)
T TIGR00864 1767 GSANASEEVDVQ 1778 (2740)
T ss_pred cccceeEEEEEE
Confidence 977665555554
No 320
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.78 E-value=7.5e-05 Score=52.95 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=36.9
Q ss_pred cccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535 7 SLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54 (460)
Q Consensus 7 ~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 54 (460)
...+|+.+.. +.+|.|.+++.+|+|.|+|.+........+..+.|+|+
T Consensus 46 ~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 46 SYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred CccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence 4566776643 24899999999999999999987655545777888873
No 321
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.78 E-value=8.4e-05 Score=53.61 Aligned_cols=48 Identities=31% Similarity=0.548 Sum_probs=38.1
Q ss_pred CcccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535 6 GSLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54 (460)
Q Consensus 6 ~~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 54 (460)
..+.+|..+.. +.+|.|.+++.+|+|.|+|.+.+..... ...+.|.|.
T Consensus 61 ~~y~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~ 114 (117)
T cd05901 61 QEYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS 114 (117)
T ss_pred CcccCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence 36678888863 3499999999999999999999876543 667777764
No 322
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.78 E-value=0.00012 Score=51.03 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=40.9
Q ss_pred ceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535 70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
.+..++|.|.+.|. |....|+|+++|..+... .........+++ |.|..-...+...|+|.+.+..
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 45568999999995 555689999999886321 111112222333 4343333345678999998754
No 323
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.77 E-value=5.3e-05 Score=54.53 Aligned_cols=48 Identities=31% Similarity=0.515 Sum_probs=37.9
Q ss_pred CcccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535 6 GSLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54 (460)
Q Consensus 6 ~~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 54 (460)
..+.+|.++.. +.+|.|.+++.+|+|.|+|.+..... .....+.|.|.
T Consensus 54 ~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~-~~~~~v~L~V~ 107 (110)
T cd05902 54 KAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGIN-DEQDTVPLEVT 107 (110)
T ss_pred hhcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCc-ccEEEEEEEEE
Confidence 46778999965 34999999999999999999998543 23666777764
No 324
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.75 E-value=0.00022 Score=49.97 Aligned_cols=66 Identities=18% Similarity=0.342 Sum_probs=43.9
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCe--eEEEcCCCccCCcccEE-------EecceEEEccccceece-EEEEEEecccce
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPT--ITWQRRDGVALPKNRVK-------IVGGNITIEGLRRVDFG-YYECVVSNEVAT 232 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~--~~W~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~~~g-~y~C~a~n~~g~ 232 (460)
.+..|+.++|.|.+. .+.|.+. +.|++++. .+...... ....++.+..- .+|.| .|+|.|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~--g~~P~a~L~i~W~rG~~-~l~~~~~~~~~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVP--GVAPRQNLTVVLLRGNE-TLSRQPFGDNTKSPVNAPATITITVD-REDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEc--CcCCCCcEEEEEeeCCE-EcccceeccccCCCceeEEEEEEecc-hhhCCcEEEEEEEeccCc
Confidence 467899999999995 6788886 79999544 44322211 12234555544 45555 899999987655
No 325
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=97.73 E-value=0.022 Score=48.60 Aligned_cols=154 Identities=23% Similarity=0.284 Sum_probs=90.6
Q ss_pred CCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE-EEcc---CCCCCCCcceEEEeec-----ceEEEEecCCCCCCc
Q psy535 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTK---GPKPGPPRNVSVTEVN-----NGFVISWQPPLERAS 370 (460)
Q Consensus 300 ~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~-~~~~---~~~P~~p~~~~~~~~~-----~~v~l~W~~~~~~~~ 370 (460)
+-..+.+.++.++..|..++.+.|.... .....+. +.+. .+-|.-|.+..+...+ ++++|.|.+..+..
T Consensus 126 ~~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~- 203 (300)
T PF10179_consen 126 GLRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS- 203 (300)
T ss_pred ceEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC-
Confidence 4567999999999999999988775432 2222333 2222 2346678887775443 68999999876532
Q ss_pred cceEEEEEEEEcCC-eeeeccccCCCCccccc--ccceecCceeeeeecc------CCCCcceEEECCCCcCceEEEEEE
Q psy535 371 LIQYYLIKYRTDGS-WKTLNKGQIRPEENSYL--GEYREQGNKDWLPIPV------TPPGSTQITINRLTPATTYEFQVV 441 (460)
Q Consensus 371 ~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~i~~L~p~~~Y~~~v~ 441 (460)
..|-|+.+.... +....... ..+... ..++..+......... ....-...+|.+|+||+.|.|.|.
T Consensus 204 --~kYCvy~~~~~~~~~~~~~~~---~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~ 278 (300)
T PF10179_consen 204 --IKYCVYRREEHSNYQERSVSR---MPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVY 278 (300)
T ss_pred --ceEEEEEEEecCchhhhhhcc---cCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEE
Confidence 567777775332 11100000 000111 0000001111111111 112234568999999999999999
Q ss_pred EeecCCCCCCCceeEeecC
Q psy535 442 GKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 442 a~n~~G~s~~s~~~~~~T~ 460 (460)
+.-..|.+-+-..+.|+|+
T Consensus 279 ~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 279 VNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred EecCCCceeecceEEEEec
Confidence 9999998877777778774
No 326
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.73 E-value=0.00025 Score=51.69 Aligned_cols=63 Identities=27% Similarity=0.471 Sum_probs=45.6
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCc-cC-----------------CcccEEEe-----cceEEEccccceec
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV-AL-----------------PKNRVKIV-----GGNITIEGLRRVDF 219 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~-~~-----------------~~~~~~~~-----~~~l~i~~~~~~~~ 219 (460)
.+..|++++|.|.+ .+ +...+.|++.... .+ ...++... ..+|.|.+++.+|+
T Consensus 9 ~v~~G~~v~l~C~~---~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 9 IKGRGQSVTLRCSQ---TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred EEcCCCcEEEEEEE---CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 67899999999998 45 6678999985321 10 11233221 23699999999999
Q ss_pred eEEEEEEecc
Q psy535 220 GYYECVVSNE 229 (460)
Q Consensus 220 g~y~C~a~n~ 229 (460)
|.|.|.+.+.
T Consensus 85 g~Y~Ca~~~~ 94 (110)
T cd05899 85 AVYLCASSLG 94 (110)
T ss_pred EEEEEEeeCC
Confidence 9999998764
No 327
>KOG4258|consensus
Probab=97.68 E-value=6.8e-05 Score=70.78 Aligned_cols=129 Identities=22% Similarity=0.340 Sum_probs=85.9
Q ss_pred eEEEccCccCccEEEEEEEEcCCCC----CCCCCcEEEEccC-----CCCCCCcceEEEeecceEEEEecCCCCCCccce
Q psy535 303 QITINRLTPATTYEFQVVGKNELGD----GMLSNIVVVKTKG-----PKPGPPRNVSVTEVNNGFVISWQPPLERASLIQ 373 (460)
Q Consensus 303 ~~~i~~l~~~~~~~~~~~a~n~~G~----~~~s~~~~~~~~~-----~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~ 373 (460)
.+.|.+|...+.|...+.|.|.++. +..+. +..++.. +.|+ |.........+++.|+|..|..+++-|.
T Consensus 783 ~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~-v~~RT~~~~~aD~i~g-~v~we~~~~~~~v~l~w~EP~~pNGli~ 860 (1025)
T KOG4258|consen 783 SYVISGLRHFTLYRIDLQACNHATPKCGCSHAAF-VFARTMPTMGADDIPG-PVTWECHIEMNSVILRWLEPKEPNGLIL 860 (1025)
T ss_pred hhhhhccccchhhhhhHhhhcccccccccchhhh-hhhccccccccccCCC-ceeEecccCcceEEEecCCCCCCCccEE
Confidence 5678889999999999999988764 32222 2222221 1222 2223333334699999999999999999
Q ss_pred EEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCc
Q psy535 374 YYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453 (460)
Q Consensus 374 ~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~ 453 (460)
.|.|.|+..+.-..... +.+ ..-.......+.+|.|| .|.++|+|..-+|.|++.+
T Consensus 861 ~Y~Vk~r~~~~et~v~c-----------vsR------------~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~ 916 (1025)
T KOG4258|consen 861 NYEVKYRRNGDETHVEC-----------VSR------------MDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTE 916 (1025)
T ss_pred EEEEEEeeccCcchhhh-----------hhh------------hhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcC
Confidence 99999998765221111 000 00012345567788887 9999999999999999988
Q ss_pred eeEe
Q psy535 454 IVVV 457 (460)
Q Consensus 454 ~~~~ 457 (460)
...+
T Consensus 917 ~~~~ 920 (1025)
T KOG4258|consen 917 SVIF 920 (1025)
T ss_pred Ccce
Confidence 7554
No 328
>PHA02633 hypothetical protein; Provisional
Probab=97.68 E-value=0.00014 Score=44.44 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=28.8
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF 55 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 55 (460)
+..|+|-++..+|+|.|.|..+|..-- ...++.|.|..
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c-~~~si~l~V~~ 54 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYS-DMMKFDLCICL 54 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCee-EEEEEEEEEee
Confidence 348999999999999999999975332 24556666653
No 329
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.64 E-value=0.00025 Score=51.33 Aligned_cols=66 Identities=29% Similarity=0.342 Sum_probs=46.5
Q ss_pred ccCCCCeEEEEeeeeccCCC-CCCeeEEEcCCCcc-----------------CCcccEEEe------cceEEEcccccee
Q psy535 163 QRKVGESVDMHCEAQEAEGT-QKPTITWQRRDGVA-----------------LPKNRVKIV------GGNITIEGLRRVD 218 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~-p~~~~~W~~~~~~~-----------------~~~~~~~~~------~~~l~i~~~~~~~ 218 (460)
.+..|++++|.|.+ ... +...+.|++..... ....++... ..+|.|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~---~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTY---SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEE---eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHH
Confidence 46789999999998 343 56789999843210 011233221 2268999999999
Q ss_pred ceEEEEEEecccc
Q psy535 219 FGYYECVVSNEVA 231 (460)
Q Consensus 219 ~g~y~C~a~n~~g 231 (460)
.|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999987654
No 330
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.64 E-value=0.00046 Score=48.09 Aligned_cols=72 Identities=7% Similarity=0.054 Sum_probs=44.0
Q ss_pred eEEEEEEEecCCCCCeEEEeeCCeecCc-----cccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 73 QGVVQCHIKANPTFQYVTWTKDKRLLEP-----YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 73 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
-..+.|.+.+..+++.|+|+++...... .....+ ...+.|.+.....+|...|+|++.+..-.......++|
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~--tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l 93 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTV--TVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTL 93 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCE--EEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEE
Confidence 4689999987666669999997221110 001111 11224666666667788899999987655545555544
No 331
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.61 E-value=0.00014 Score=53.28 Aligned_cols=46 Identities=26% Similarity=0.422 Sum_probs=33.0
Q ss_pred cccceEEEee-----CCeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEE
Q psy535 7 SLETRVVIKK-----DGTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLN 52 (460)
Q Consensus 7 ~~~~r~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~ 52 (460)
...+|+.+.. +.+|.|.+++.+|+|.|+|.+.|..+.. ...++.|.
T Consensus 63 ~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 63 RFKGRVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred cccCeEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 4456776653 3489999999999999999999876532 13445554
No 332
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.59 E-value=0.00034 Score=48.83 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=38.6
Q ss_pred ecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEEe---ecCCC-CCeEEEEEEEcC
Q psy535 68 LPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT---RVNQN-HQGRYTCTPYNA 134 (460)
Q Consensus 68 ~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~-d~G~y~C~~~~~ 134 (460)
+..+..++|.|.+.+. |....++|.+||..+............+.++.+. .+... ....|+|.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~ 84 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHE 84 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEEC
Confidence 3345678999999994 6666799999998864321111111111132221 22333 344599999863
No 333
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.57 E-value=0.00022 Score=50.78 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=40.2
Q ss_pred cceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccc--cEEEe--ecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535 69 PFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTK--DIVVM--QNGS------LLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 69 ~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~--~~~~~--~~~~------l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
..++.++|.|.+.|. |....++|+++|..+...... ..... .+++ |.|..-...+...|+|.+....
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 346789999999995 545578999999886532110 11111 1243 3332222235577999998654
No 334
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.56 E-value=0.00025 Score=50.94 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=42.0
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCC----ee---cC---cc-c---------cccEEEeec---CeEEEeecCCCC
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDK----RL---LE---PY-Q---------TKDIVVMQN---GSLLFTRVNQNH 123 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~----~~---~~---~~-~---------~~~~~~~~~---~~l~i~~~~~~d 123 (460)
.+.+|++|+|.|....... ..+.|+|-. .. +. .. . ..++..... ..|.|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~-~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSP-TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCC-CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 3578999999999865432 369999832 11 10 00 0 112222111 259999999999
Q ss_pred CeEEEEEEE
Q psy535 124 QGRYTCTPY 132 (460)
Q Consensus 124 ~G~y~C~~~ 132 (460)
+|.|.|.+.
T Consensus 81 sgtY~Ca~~ 89 (104)
T cd05720 81 EGYYFCSVA 89 (104)
T ss_pred CEEEEEEEc
Confidence 999999875
No 335
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.50 E-value=0.00079 Score=48.68 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=44.0
Q ss_pred ccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCC-ccC-------------CcccEEEe----cceEEEccccceeceEEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDG-VAL-------------PKNRVKIV----GGNITIEGLRRVDFGYYE 223 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~-~~~-------------~~~~~~~~----~~~l~i~~~~~~~~g~y~ 223 (460)
.+..|++++|.|.+ .+.. ...+.|++... ... ...++... ...|.|.+++.+|+|.|.
T Consensus 11 ~v~~G~~v~L~C~~---~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 87 (106)
T cd04980 11 SVSPGESATISCKA---SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYY 87 (106)
T ss_pred EECCCCCEEEEEEE---CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEE
Confidence 67899999999998 3443 56799987431 100 01233322 125899999999999999
Q ss_pred EEEecc
Q psy535 224 CVVSNE 229 (460)
Q Consensus 224 C~a~n~ 229 (460)
|.+.+.
T Consensus 88 Ca~~~~ 93 (106)
T cd04980 88 CQQYGT 93 (106)
T ss_pred EEEeCC
Confidence 998653
No 336
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.49 E-value=0.00027 Score=52.06 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=32.5
Q ss_pred cccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEE
Q psy535 7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLN 52 (460)
Q Consensus 7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~ 52 (460)
...+|+.+..+ .+|.|.+++.+|+|.|.|.+.+..... ....+.|.
T Consensus 64 ~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 64 RFKDRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred cccCcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 34467777543 489999999999999999999765432 12345544
No 337
>KOG4152|consensus
Probab=97.47 E-value=0.00057 Score=60.96 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=59.2
Q ss_pred EccCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEeecceEEEEecCCCCCC-ccceEEEEEE
Q psy535 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEVNNGFVISWQPPLERA-SLIQYYLIKY 379 (460)
Q Consensus 306 i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~~~v~l~W~~~~~~~-~~i~~y~i~~ 379 (460)
-..|.++..|.|++.|.|..|.+.+|..+.+.+-. ..|.+|..+++...-..+.+.|++|...+ +.|..|..+.
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k~~eGi~l~weppt~p~sg~Iieys~yl 726 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKKTIEGISLVWEPPTKPGSGTIIEYSPYL 726 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccccccceeecccCCCCCCCcceEEeehhh
Confidence 34578899999999999999999999988876653 44788888888776678999999997764 4677776654
No 338
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.45 E-value=0.00043 Score=47.20 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=37.3
Q ss_pred eEEEEEEEecCCCC-CeEEEeeCCe--e---cCc-----------cccccEEEeec-----CeEEEeecCCCCCeEEEEE
Q psy535 73 QGVVQCHIKANPTF-QYVTWTKDKR--L---LEP-----------YQTKDIVVMQN-----GSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 73 ~~~l~C~~~~~~~~-~~v~W~~~~~--~---~~~-----------~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~ 130 (460)
+++|.|.+...... ..+.|++... . +.. ....++..... .+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899988764432 3689998431 1 100 11234443332 3599999999999999996
Q ss_pred E
Q psy535 131 P 131 (460)
Q Consensus 131 ~ 131 (460)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 339
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.45 E-value=0.00027 Score=44.23 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=34.6
Q ss_pred ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.|.+|+|+|...+. .+.|.+++..+.. .+..+.+.+-. +++|.|+|.+.+
T Consensus 6 sGTtVtlTCP~~~~----~i~W~~n~~~~~g---------~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLSGD----DIKWKKNDQVSQG---------SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCCCC----CceEEeCCccCCC---------CCceEEeeccC-CCCceEEEEeCC
Confidence 48899999976532 3999999966542 11234444445 889999999853
No 340
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.43 E-value=0.0011 Score=45.33 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=42.4
Q ss_pred eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEE-eecCe------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535 71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVV-MQNGS------LLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~------l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
++.++|.|.+.+. |....|+|+++|..+.......... ..+++ |.+. ..+...|+|.+......
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 7789999999985 5555799999999875322221122 23443 4443 56677899999876543
No 341
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.39 E-value=0.00076 Score=45.26 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=39.2
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccE--------EEecceEEEccccceeceEEEEEEeccc
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV--------KIVGGNITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
+.|.|... .+.|.+.|+|++++. .+..... ....+.|.+..-...|...|+|.|.|..
T Consensus 2 ~~L~C~s~--gSkP~A~I~W~k~~~-~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAM--ASKPAATIRWFKGNK-ELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEec--CCCCCCEEEEEECCE-ECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 68999985 788999999999553 4433211 1122356676555666669999999865
No 342
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.37 E-value=0.00074 Score=48.98 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=42.1
Q ss_pred ecceeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc-ccEEEeec-Ce------EEEeecCCCC-CeEEEEEEEcCCCC
Q psy535 68 LPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT-KDIVVMQN-GS------LLFTRVNQNH-QGRYTCTPYNAHGT 137 (460)
Q Consensus 68 ~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~~~-~~------l~i~~~~~~d-~G~y~C~~~~~~g~ 137 (460)
+..++.++|.|.+.+. |....|+|++||..+..... .......+ ++ |.|......+ ...|+|.+......
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 3456679999999996 44457999999988753211 11111121 33 4444333223 57899999875443
No 343
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.36 E-value=0.0019 Score=50.19 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=54.9
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC----------C--cccEEE-----ecceEEEccccceeceEEEEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----------P--KNRVKI-----VGGNITIEGLRRVDFGYYECV 225 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~----------~--~~~~~~-----~~~~l~i~~~~~~~~g~y~C~ 225 (460)
.+.+|++++|.|... .+...+.++|++.++... + ..++.. ....+.|.++..+|+|.|.|.
T Consensus 26 ~V~ege~VtLsCs~t--~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 26 TVSEHVNVKISCNKT--SSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEcCCCCEEEEEecC--CCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 678899999999973 355677899998533111 1 124443 345799999999999999998
Q ss_pred Eec-ccc-eeeeeeEEEEec
Q psy535 226 VSN-EVA-TIVQAAQLVVEG 243 (460)
Q Consensus 226 a~n-~~g-~~~~~~~l~v~~ 243 (460)
..- +.| ..+...-|.|..
T Consensus 104 F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEecCCCCCceeEEEEEEEc
Confidence 753 345 555566666653
No 344
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.35 E-value=0.00095 Score=49.23 Aligned_cols=63 Identities=25% Similarity=0.452 Sum_probs=44.8
Q ss_pred ccCCCCeEEEEeeeeccCC--CCCCeeEEEcCCC--ccC-----------------CcccEEEe------cceEEEcccc
Q psy535 163 QRKVGESVDMHCEAQEAEG--TQKPTITWQRRDG--VAL-----------------PKNRVKIV------GGNITIEGLR 215 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~--~p~~~~~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~ 215 (460)
.+..|+.++|.|.+ .+ .+.+.+.|++... .+. ...++... ...|.|.+++
T Consensus 9 ~~~~G~~v~l~C~~---~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~ 85 (116)
T cd04982 9 TREESKSVTISCKV---SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE 85 (116)
T ss_pred EeCCCCCEEEEEEE---eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence 67889999999998 44 5677899998421 110 12233321 1258999999
Q ss_pred ceeceEEEEEEec
Q psy535 216 RVDFGYYECVVSN 228 (460)
Q Consensus 216 ~~~~g~y~C~a~n 228 (460)
.+|+|.|.|.+..
T Consensus 86 ~~Dsg~Y~C~~~~ 98 (116)
T cd04982 86 KEDSATYYCAYWE 98 (116)
T ss_pred HHHCEEEEEEEec
Confidence 9999999999864
No 345
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.34 E-value=0.0016 Score=45.34 Aligned_cols=79 Identities=9% Similarity=0.026 Sum_probs=48.2
Q ss_pred eeecceeeEEE-EEEEecCCCCCeEEEeeCCeecCc-----cccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 66 QYLPFRLQGVV-QCHIKANPTFQYVTWTKDKRLLEP-----YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 66 ~~~~~g~~~~l-~C~~~~~~~~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
..+.+|+.+.+ .|.+.+..+++.|+|+.+...... ..+..+ .-.+.|.+.....+|...++|.+.+..-...
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~--TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~ 88 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTT--TVTSEYIWVPSRHANGHPLTCVVSHPALQQD 88 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCE--EEEEEEEEEeCHHHCCcEEEEEEeCcccCCC
Confidence 34566788888 999877766679999986332110 011111 2223477766677788889999987644333
Q ss_pred eeeEEEE
Q psy535 140 SSGQMEV 146 (460)
Q Consensus 140 ~~~~~~v 146 (460)
....+.|
T Consensus 89 ~~~~~~L 95 (97)
T cd07704 89 FRITHIL 95 (97)
T ss_pred ceeeEEe
Confidence 3333333
No 346
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.29 E-value=0.0011 Score=46.46 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=38.4
Q ss_pred ceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc--cccEEEeecCeEEEe---ecCCCC---CeEEEEEEEcCC
Q psy535 70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ--TKDIVVMQNGSLLFT---RVNQNH---QGRYTCTPYNAH 135 (460)
Q Consensus 70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~l~i~---~~~~~d---~G~y~C~~~~~~ 135 (460)
.++.++|.|.+.+. |....|+|+|||.. .... .... ...++++.+. .+...| ...|+|++....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~-~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAV-LQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCE-eCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 35578999999995 65667999999997 3211 1111 1114433221 223333 567999998654
No 347
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.28 E-value=0.00085 Score=46.93 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=42.3
Q ss_pred ceeeeecceeeEEEEEEEecC--CCCCeEEEeeCCeecCccccccEEEeecCeEEEee---cCC---CCCeEEEEEEEcC
Q psy535 63 PTVQYLPFRLQGVVQCHIKAN--PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR---VNQ---NHQGRYTCTPYNA 134 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~---~d~G~y~C~~~~~ 134 (460)
|....+..+..++|.|.+.+. |....|+|.++|.. ...... .....++++.+.. +.. .....|+|.+.+.
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~-~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTS-AESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcC-cccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence 433334457789999999995 44567999999875 221111 1223345443332 222 3335699999875
Q ss_pred CC
Q psy535 135 HG 136 (460)
Q Consensus 135 ~g 136 (460)
..
T Consensus 89 ~l 90 (99)
T cd04986 89 EG 90 (99)
T ss_pred Cc
Confidence 43
No 348
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.25 E-value=0.0014 Score=41.33 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=35.4
Q ss_pred eeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535 72 LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 72 ~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
..|.|.|.+. .+|+|++ |..+... .+.+|.+.....+-.|.|+|.+.+
T Consensus 7 ~~V~L~C~~~-----tsi~W~k-G~~~~~~--------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 7 GKVFLKCNGA-----TNITWKK-GKEILEV--------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ceEEEEecCC-----CcEEEec-Ccccccc--------cccEEeccCcccCCCcceEecCcc
Confidence 4689999652 2699999 6655421 144688888888889999998865
No 349
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.24 E-value=0.00034 Score=51.47 Aligned_cols=48 Identities=29% Similarity=0.468 Sum_probs=34.5
Q ss_pred CcccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535 6 GSLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53 (460)
Q Consensus 6 ~~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 53 (460)
....+|+.+..++ +|.|.+++.+|+|.|.|.+...........+.|.|
T Consensus 62 ~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 62 PSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp TTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 3556788877764 69999999999999999999863222233444443
No 350
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.24 E-value=0.0022 Score=45.54 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=43.0
Q ss_pred ccCCCCeEEEEeeeeccCCC--CCCeeEEEcCCCc-cC-------------CcccEEEe----cceEEEccccceeceEE
Q psy535 163 QRKVGESVDMHCEAQEAEGT--QKPTITWQRRDGV-AL-------------PKNRVKIV----GGNITIEGLRRVDFGYY 222 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~--p~~~~~W~~~~~~-~~-------------~~~~~~~~----~~~l~i~~~~~~~~g~y 222 (460)
.+..|++++|.|.+ ... ....+.|++.... .. ...++... ...|.|.+++.+|+|.|
T Consensus 2 ~v~~G~~v~l~C~~---~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y 78 (98)
T cd04984 2 SVSPGETVTITCTG---SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADY 78 (98)
T ss_pred ccCCCCCEEEEEEE---cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEE
Confidence 46789999999998 343 4567899874321 11 01133321 12589999999999999
Q ss_pred EEEEec
Q psy535 223 ECVVSN 228 (460)
Q Consensus 223 ~C~a~n 228 (460)
.|.+.+
T Consensus 79 ~C~~~~ 84 (98)
T cd04984 79 YCQVWD 84 (98)
T ss_pred EEEEcc
Confidence 999865
No 351
>KOG1480|consensus
Probab=97.15 E-value=5.3e-05 Score=70.60 Aligned_cols=125 Identities=17% Similarity=0.307 Sum_probs=80.6
Q ss_pred EEEeecCCCCC---eeEEE--EEEeCCCCcceeeeEEEEec-CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535 20 LVINPVGSDDS---GLYMC--EVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK 93 (460)
Q Consensus 20 L~i~~~~~~d~---G~Y~C--~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~ 93 (460)
+.|..-..++. -.|.| .|....|...+....+.+.+ ...+...|....+..+..+.+.|...-..+...+.|++
T Consensus 87 i~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k 166 (909)
T KOG1480|consen 87 IDISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLK 166 (909)
T ss_pred eeeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccc
Confidence 44444444433 34655 45555554433333332221 22345567777788888899999874443444799999
Q ss_pred CCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 94 DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
++..+.+ ........+..|.+..++..|.|+|+|+|.|..+.. ....++|.
T Consensus 167 ~e~~~~p--d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r-~~~~~~v~ 217 (909)
T KOG1480|consen 167 NEVVIDP--DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKR-KSDPATVQ 217 (909)
T ss_pred cCCCCCc--cccchhhhcCCccccchhhhhcccceeeeehhhccc-cccceEEE
Confidence 9999887 445555667789999999999999999999877654 33334443
No 352
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.14 E-value=0.0018 Score=45.00 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=41.8
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc---------cEEEecceEEEccccceeceEEEEEEecccce
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---------RVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
|+.+.+.|.+. .+.|.+.+.|+.+++...... ........|.+..-...+...++|.+.+....
T Consensus 14 ~~~~~~~C~s~--~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSS--GGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEE--EEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeC--CeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 78999999885 899999999999665441110 11111234666555555667899999986543
No 353
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=97.10 E-value=0.002 Score=46.55 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=55.4
Q ss_pred CCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEc--CCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535 343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTD--GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420 (460)
Q Consensus 343 P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (460)
..+|.++++....-...|+|+++.. ...-..|.|+|+.. +.|..... - ...
T Consensus 22 lp~P~nv~~~s~nf~~iL~W~~~~~-~~~~~~ytVq~~~~~~~~W~~v~~-------------------------C-~~i 74 (107)
T PF01108_consen 22 LPAPQNVTVDSVNFKHILRWDPGPG-SPPNVTYTVQYKKYGSSSWKDVPG-------------------------C-QNI 74 (107)
T ss_dssp GSSCEEEEEEEETTEEEEEEEESTT-SSSTEEEEEEEEESSTSCEEEECC-------------------------E-EEE
T ss_pred CCCCCeeEEEEECCceEEEeCCCCC-CCCCeEEEEEEEecCCcceeeccc-------------------------e-ecc
Confidence 5689999999988899999999654 33678899999942 33443310 0 012
Q ss_pred CcceEEECCCC--cCceEEEEEEEeecCCCCC
Q psy535 421 GSTQITINRLT--PATTYEFQVVGKNELGDGM 450 (460)
Q Consensus 421 ~~~~~~i~~L~--p~~~Y~~~v~a~n~~G~s~ 450 (460)
..+...+++.. +...|.+||+|.-....|.
T Consensus 75 ~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~~S~ 106 (107)
T PF01108_consen 75 TETSCDLTDETSDPSESYYARVRAEVGNQTSD 106 (107)
T ss_dssp SSSEEECTTCCTTTTSEEEEEEEEEETTEEEE
T ss_pred cccceeCcchhhcCcCCEEEEEEEEeCCccCC
Confidence 33555565433 7889999999998765553
No 354
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.04 E-value=0.0053 Score=43.60 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=44.8
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc-------------CCcccEEEe------cceEEEccccceeceEEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA-------------LPKNRVKIV------GGNITIEGLRRVDFGYYE 223 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~-------------~~~~~~~~~------~~~l~i~~~~~~~~g~y~ 223 (460)
.+..|++++|.|... .......+.|++..... ....+.... ..+|.|.++..+|+|.|.
T Consensus 3 ~~~~G~~vtl~C~~~--~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~ 80 (98)
T cd05716 3 TGELGGSVTIPCPYP--PKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW 80 (98)
T ss_pred EEEeCCeEEEEeeCC--CCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE
Confidence 467899999999973 22345678999854211 012233332 126899999999999999
Q ss_pred EEEecc
Q psy535 224 CVVSNE 229 (460)
Q Consensus 224 C~a~n~ 229 (460)
|.+...
T Consensus 81 C~~~~~ 86 (98)
T cd05716 81 CGVGDD 86 (98)
T ss_pred EEcccC
Confidence 998764
No 355
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.03 E-value=0.0048 Score=45.44 Aligned_cols=64 Identities=25% Similarity=0.381 Sum_probs=44.5
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc--------------CCcccEEEe------cceEEEccccceeceEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA--------------LPKNRVKIV------GGNITIEGLRRVDFGYY 222 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~--------------~~~~~~~~~------~~~l~i~~~~~~~~g~y 222 (460)
.+..|++++|.|... .......+.|++..... ....|+... ..+|.|.++...|+|.|
T Consensus 10 ~~~~G~~v~L~C~~~--~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 10 SVQVGEEVTLNCRYE--TSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred EEcCCCCEEEEEEEe--CCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 678999999999983 22345679999742111 012344432 12589999999999999
Q ss_pred EEEEec
Q psy535 223 ECVVSN 228 (460)
Q Consensus 223 ~C~a~n 228 (460)
.|.+..
T Consensus 88 ~C~~~~ 93 (116)
T cd07706 88 FCALST 93 (116)
T ss_pred EEEEEC
Confidence 999874
No 356
>PHA02633 hypothetical protein; Provisional
Probab=97.02 E-value=0.0018 Score=39.67 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=26.8
Q ss_pred ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 110 ~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
....|.|.++..+|+|.|.|...|..-....+..++
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~ 51 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLC 51 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEE
Confidence 445699999999999999999987655544443333
No 357
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.95 E-value=0.0046 Score=42.10 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=37.1
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE---ecc------eEEEccccceeceEEEEEEecccce
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI---VGG------NITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~---~~~------~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
+.|.|.+. .+.|.+.+.|++++. .+....... .++ .|.+......+...|+|.+.+....
T Consensus 2 ~~L~C~~~--~~~P~~~v~W~~~~~-~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSS--GSKPAATIRWFKGDK-ELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEec--CcCcCCeEEEEECCE-EccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999994 667889999999543 333221111 111 2344434444567999999987654
No 358
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.93 E-value=0.0039 Score=43.06 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=40.2
Q ss_pred ecceeeEEEEEEEecCCCC--CeEEEeeCCeecCcccccc-----EEEeecCeEEEeecCCCCCe-EEEEEEEcC
Q psy535 68 LPFRLQGVVQCHIKANPTF--QYVTWTKDKRLLEPYQTKD-----IVVMQNGSLLFTRVNQNHQG-RYTCTPYNA 134 (460)
Q Consensus 68 ~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~ 134 (460)
+.+|..+++.|.+.+..+. ..+.|+++...+....... ........+.|... ++|.| .|.|+|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4789999999999765433 4699999776654211100 00011124566554 55555 899998643
No 359
>KOG0613|consensus
Probab=96.92 E-value=0.0048 Score=61.90 Aligned_cols=304 Identities=15% Similarity=0.105 Sum_probs=158.9
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec------CCe----eE-------Ecce--eeeecceeeEEEEEE
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF------PAK----VT-------FTPT--VQYLPFRLQGVVQCH 79 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~------~p~----~~-------~~~~--~~~~~~g~~~~l~C~ 79 (460)
++.|.+....+.+.|+|...+..+.. ...+...+.. +.. +. ..+. ......+..+++.|.
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~-~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQD-RFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred cccccccCCccccceeeecccCCccc-ceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence 67788888889999999988877664 2222222211 110 01 1111 112223456789999
Q ss_pred EecCCCCCeEEEeeCCeecCccccccEEE---eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee----CCC
Q psy535 80 IKANPTFQYVTWTKDKRLLEPYQTKDIVV---MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR----KPP 152 (460)
Q Consensus 80 ~~~~~~~~~v~W~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~----~~p 152 (460)
..+.+.+..+.|+.++............. .....+.|..+...+.+.|.|.|.|..|........++... .++
T Consensus 358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~ 437 (1205)
T KOG0613|consen 358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPP 437 (1205)
T ss_pred ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCc
Confidence 99988776799999776554322111111 11235888889999999999999999887655544444321 112
Q ss_pred ceeeCCCcc-cccCCCCeEEEEeeeeccCCCCCC--eeEEEcCCCccCCcccEEEe---cceEEEccccceeceEEEEEE
Q psy535 153 AFTIKPEAM-YQRKVGESVDMHCEAQEAEGTQKP--TITWQRRDGVALPKNRVKIV---GGNITIEGLRRVDFGYYECVV 226 (460)
Q Consensus 153 ~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~a 226 (460)
.+.. .... .....-+.+.+.|.. ...+.+ .++|.+.+. .......... -.+|.+.-....+.+.|.-..
T Consensus 438 ~~kk-~~~~t~~L~~~~~i~~~~~~---~s~~~~~~~~tt~~~~~-~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~ 512 (1205)
T KOG0613|consen 438 KFKK-DVSTTDLLTVKDEITVRTPD---SSTSMPMTTVTTIKDGL-PLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRAL 512 (1205)
T ss_pred cccc-cccccccccCCcccccccCC---CCccccceeEeeccCCc-ccccccccccccchhhheeeccCCCccchhhhhh
Confidence 2221 1111 112233678888887 555544 555555322 2222222222 224556666666777775443
Q ss_pred ecccceeeeeeEEEEecCCCCCCC-ceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEE
Q psy535 227 SNEVATIVQAAQLVVEGTQPHAPY-NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305 (460)
Q Consensus 227 ~n~~g~~~~~~~l~v~~~~p~~p~-~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (460)
....+.............-..++. .+....-.....+.|.+-..........|....+ ....|.... ...+ .+..
T Consensus 513 ~~~~~k~~~~~~~~l~~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~~~~-~r~g-tt~t 588 (1205)
T KOG0613|consen 513 RTLQGKPVPSLDRKLPAAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWRVPE-SRPG-TTET 588 (1205)
T ss_pred hccCCCCCCcccccccccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhh--hccCCcccc-cCCC-cccc
Confidence 333333222221111111111121 1112222334455555432222222122222222 112222222 2223 7788
Q ss_pred EccCccCccEEEEEEEEcCCCCCCCCC
Q psy535 306 INRLTPATTYEFQVVGKNELGDGMLSN 332 (460)
Q Consensus 306 i~~l~~~~~~~~~~~a~n~~G~~~~s~ 332 (460)
+-+..++..|.+...+.+..|.+..+.
T Consensus 589 ~~~~~p~~~~~~t~~~k~~~gE~~ps~ 615 (1205)
T KOG0613|consen 589 IGSILPGHEYHVTIKAKNELGESRPSS 615 (1205)
T ss_pred cccccccccceeehhhhhcccccCCCC
Confidence 888999999999999999999887763
No 360
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.87 E-value=0.0026 Score=44.09 Aligned_cols=47 Identities=28% Similarity=0.375 Sum_probs=38.5
Q ss_pred ccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535 8 LETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54 (460)
Q Consensus 8 ~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 54 (460)
.++|+.+..+ .+|.|..+++.|+|.|.-.+++..|......+.|.|+
T Consensus 60 ~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 60 FNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp HHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 5688888775 5999999999999999999999999887777777765
No 361
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=96.85 E-value=0.02 Score=38.47 Aligned_cols=67 Identities=40% Similarity=0.671 Sum_probs=44.3
Q ss_pred ecceEEEEeecCCCCCCCceeeEEEEEEecCCC---CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCC
Q psy535 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD 327 (460)
Q Consensus 257 ~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~ 327 (460)
...++.++|.++..... ..|.+.+...... .|....... ....+.+.+|.++..|.+++.|.+..|.
T Consensus 13 ~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 13 TSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTP-SSTSYTLTGLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred eCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecC-CccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence 44589999996543332 3556655543322 244433322 3578999999999999999999987653
No 362
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.72 E-value=0.0088 Score=40.68 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=37.1
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE-E---------ecceEEEccccceeceEEEEEEecccce
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK-I---------VGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~-~---------~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
++|.|.+. ...|...++|++++.. +...... . ....|.+..-...+...|+|.+.+....
T Consensus 2 ~~LtC~a~--gf~P~~~itW~kng~~-l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTS--GSKPAADIRWFKNDKE-IKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeC--CccCCCEEEEEECCEE-CcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 68999994 6678889999995543 3322111 1 1123455444455566899999876433
No 363
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.69 E-value=0.012 Score=42.23 Aligned_cols=63 Identities=19% Similarity=0.401 Sum_probs=41.9
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCc---cC-------C------------cccEEEe----cceEEEccccc
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV---AL-------P------------KNRVKIV----GGNITIEGLRR 216 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~---~~-------~------------~~~~~~~----~~~l~i~~~~~ 216 (460)
.+..|++++|.|.+ .......+.|++.... .+ . ..++... ...|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~---~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~ 78 (104)
T cd05720 2 DAELGQKVELKCEV---LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK 78 (104)
T ss_pred cccCCCeEEEEEEe---cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH
Confidence 36789999999987 3334457889875422 10 0 1112211 12589999999
Q ss_pred eeceEEEEEEec
Q psy535 217 VDFGYYECVVSN 228 (460)
Q Consensus 217 ~~~g~y~C~a~n 228 (460)
+|+|.|.|.+.+
T Consensus 79 sDsgtY~Ca~~~ 90 (104)
T cd05720 79 ENEGYYFCSVAS 90 (104)
T ss_pred HHCEEEEEEEcc
Confidence 999999998763
No 364
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.69 E-value=0.011 Score=40.31 Aligned_cols=59 Identities=17% Similarity=0.339 Sum_probs=36.3
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--e-c-ce------EEEccccceeceEEEEEEecccc
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--V-G-GN------ITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~-~-~~------l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
++|.|.+. .+.|.+.+.|++++. .+....... . + ++ +.+......+...|+|.+.+...
T Consensus 2 ~~LtC~a~--g~~P~~~ItW~k~g~-~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSS--GSKPAANIKWRKGDQ-ELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEec--CccCCCEeEEEECCE-ECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 68999994 566889999999553 333221111 1 1 22 33334445566799999988654
No 365
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.63 E-value=0.012 Score=42.57 Aligned_cols=64 Identities=20% Similarity=0.403 Sum_probs=42.4
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc--C--------------------CcccEEE--ec----ceEEEccc
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA--L--------------------PKNRVKI--VG----GNITIEGL 214 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~--~--------------------~~~~~~~--~~----~~l~i~~~ 214 (460)
.+..|++++|.|.+. .......+.|++..... . ...+... .. ..|.|.++
T Consensus 2 ~v~~G~~vtL~C~~~--~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAK--GISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEe--cCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence 467899999999983 11234579999754320 0 0123322 11 24899999
Q ss_pred cceeceEEEEEEec
Q psy535 215 RRVDFGYYECVVSN 228 (460)
Q Consensus 215 ~~~~~g~y~C~a~n 228 (460)
+.+|+|.|.|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999753
No 366
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.63 E-value=0.0057 Score=43.12 Aligned_cols=63 Identities=27% Similarity=0.421 Sum_probs=40.3
Q ss_pred CCCCeEEEEeeeeccCCC-C-CCeeEEEcCCCccCCcccE--E---Eecc------eEEEccccceeceEEEEEEecccc
Q psy535 165 KVGESVDMHCEAQEAEGT-Q-KPTITWQRRDGVALPKNRV--K---IVGG------NITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~~~~~~~~~--~---~~~~------~l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
..|+.++|.|.+ .|. | ...++|++++. .+..... . ..++ .|.+......+.+.|+|.+.+...
T Consensus 11 ~~~~~~~L~C~a---~g~~P~~~~i~W~~~g~-~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLA---TGFYPPDITVTWLKNGK-ELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEE---eeEECCCcEEEEEECCE-ECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468899999999 565 5 36899999543 4332221 1 1122 344444444588999999988654
No 367
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.62 E-value=0.012 Score=38.32 Aligned_cols=58 Identities=31% Similarity=0.493 Sum_probs=40.7
Q ss_pred EEEEeeeeccCCCCCCeeEEEcCCCccCCcc--------cEEEecceEEEccccceeceEEEEEEeccc
Q psy535 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKN--------RVKIVGGNITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
+.|.|.+ .+.+...+.|.+.+....... ........+.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~---~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLA---SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEe---cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4689998 457788999998554332211 112233468889999999999999998765
No 368
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.62 E-value=0.0013 Score=44.80 Aligned_cols=31 Identities=42% Similarity=0.700 Sum_probs=26.0
Q ss_pred cccceEEEeeC-----CeEEEeecCCCCCeeEEEEE
Q psy535 7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEV 37 (460)
Q Consensus 7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~ 37 (460)
...+|+.+..+ .+|.|.+++.+|+|.|.|.+
T Consensus 46 ~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 46 SYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred ccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 45688888765 38999999999999999964
No 369
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.61 E-value=0.0027 Score=46.44 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=36.3
Q ss_pred ceeeEEEEEEEecCCC----CCeEEEeeCCeecCccccccEEE--------------eecCeEEEeecCCCCCeEEEEEE
Q psy535 70 FRLQGVVQCHIKANPT----FQYVTWTKDKRLLEPYQTKDIVV--------------MQNGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 70 ~g~~~~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~--------------~~~~~l~i~~~~~~d~G~y~C~~ 131 (460)
=+++|.|.|.+..... ...|.|..++..+-......... ..+.+|.+.....- .|.|+|++
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 3788999999965221 13599999888764322211111 11124777764444 89999999
Q ss_pred EcCCCC
Q psy535 132 YNAHGT 137 (460)
Q Consensus 132 ~~~~g~ 137 (460)
......
T Consensus 105 t~~~~e 110 (130)
T PF08204_consen 105 TELSRE 110 (130)
T ss_dssp EETTEE
T ss_pred EecCCC
Confidence 875543
No 370
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.48 E-value=0.011 Score=42.65 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=55.2
Q ss_pred CCCcceEEEeecceEEEEecCCCC-----CCc-------cceEEEEEEEEcCCeeeeccccCCCCcccccccceecCcee
Q psy535 344 GPPRNVSVTEVNNGFVISWQPPLE-----RAS-------LIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD 411 (460)
Q Consensus 344 ~~p~~~~~~~~~~~v~l~W~~~~~-----~~~-------~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (460)
+||. +.+....+.|.|.+.+|.. ... ....|.|.|+..++-...
T Consensus 4 gPP~-v~v~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~----------------------- 59 (106)
T PF09294_consen 4 GPPS-VNVSSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKK----------------------- 59 (106)
T ss_dssp -SSE-EEEEEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEE-----------------------
T ss_pred cCCE-EEEEECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccce-----------------------
Confidence 3555 8887777899999998861 111 235799999987752000
Q ss_pred eeeeccCCCCcceEEECCCCcCceEEEEEEEeecC--CCCCCCceeEeec
Q psy535 412 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL--GDGMLSNIVVVKT 459 (460)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~--G~s~~s~~~~~~T 459 (460)
.........+.|.+|.|++.|=|+|.|.... -.|.+|++.=++|
T Consensus 60 ----~~~~~~~~~~~l~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 60 ----KEIETKNSSVTLSDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp ----EEEESSSEEEEEES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred ----EEEeecCCEEEEeCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 0011245667899999999999999993333 3477777765554
No 371
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.41 E-value=0.0043 Score=50.80 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=34.8
Q ss_pred CcccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeC
Q psy535 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNG 40 (460)
Q Consensus 2 ~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 40 (460)
|+++...++++.|...|.|.+.+..++++|.|+|...-.
T Consensus 21 ~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 21 NGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 456677888999999999999999999999999998854
No 372
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.37 E-value=0.032 Score=40.00 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=41.9
Q ss_pred eeeeecceeeEEEEEEEecCCCCC--eEEEeeCCe-ecC-----------c-cccccEEEeec-----CeEEEeecCCCC
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQ--YVTWTKDKR-LLE-----------P-YQTKDIVVMQN-----GSLLFTRVNQNH 123 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~~-~~~-----------~-~~~~~~~~~~~-----~~l~i~~~~~~d 123 (460)
....+..|.+++|.|.+.+..-.. .+.|+|... .++ . ....++....+ -+|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 334455677899999997754332 689998321 100 0 01122222221 159999999999
Q ss_pred CeEEEEEE
Q psy535 124 QGRYTCTP 131 (460)
Q Consensus 124 ~G~y~C~~ 131 (460)
.+.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999974
No 373
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.36 E-value=0.0058 Score=45.17 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=27.8
Q ss_pred cccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeC
Q psy535 7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNG 40 (460)
Q Consensus 7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~ 40 (460)
...+|+++..+ .+|.|.+++.+|+|.|.|.+...
T Consensus 64 ~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 64 STRGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred cccccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 34579988532 38999999999999999999774
No 374
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.34 E-value=0.039 Score=39.91 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=27.2
Q ss_pred CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCc
Q psy535 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGV 195 (460)
Q Consensus 150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~ 195 (460)
.+|...+-.........|+.++|.|.+. ...|. ..++|++++..
T Consensus 4 ~~P~~p~i~~~~~~~~~g~~~tL~C~a~--gF~P~~i~v~W~kng~~ 48 (111)
T cd05772 4 AKPSVPVVSGPSGRANPGQSVNFTCSAH--GFSPRDITVKWLKNGNE 48 (111)
T ss_pred cCCCCcEeCCchhccCCCCCEEEEEEEe--eEeCCCCEEEEEECCEE
Confidence 3444333332222456788899999994 44554 58999995443
No 375
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.32 E-value=0.013 Score=36.81 Aligned_cols=52 Identities=23% Similarity=0.457 Sum_probs=33.7
Q ss_pred CCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecc
Q psy535 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
..|..|+|+|+. .. ..+.|.+++ ..... .+..+.+.+.. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~---~~---~~i~W~~n~-~~~~g-----~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPL---SG---DDIKWKKND-QVSQG-----SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCC---CC---CCceEEeCC-ccCCC-----CCceEEeeccC-CCCceEEEEeCCC
Confidence 368999999985 22 239999955 33332 22234444455 7899999998643
No 376
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.28 E-value=0.78 Score=40.98 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=62.4
Q ss_pred eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEE
Q psy535 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQ 190 (460)
Q Consensus 113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~ 190 (460)
.|.|..+....+|.|+=...+..+.......++|....+|.+.+.+.. +..|+.....|.+. .-+|. ..+.|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P---vL~Ge~Y~AtC~va--~YYPp~Sv~lrWf 257 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA---VLEGEPFGATCVAA--NYYPGDRAAFRWF 257 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc---cccCCCceEEEEee--eecCCCceEEEEE
Confidence 599999999999999998777666555667788888899998888765 57899999999984 33333 389999
Q ss_pred cCCCcc
Q psy535 191 RRDGVA 196 (460)
Q Consensus 191 ~~~~~~ 196 (460)
.++...
T Consensus 258 ~ng~~V 263 (466)
T PHA03270 258 EGGDEV 263 (466)
T ss_pred eCCccc
Confidence 955544
No 377
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.24 E-value=0.054 Score=37.78 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=43.7
Q ss_pred CCCcccccCCCCeEEE-EeeeeccCCCCCCeeEEEcCCCccCCcccEE------EecceEEEccccceeceEEEEEEecc
Q psy535 157 KPEAMYQRKVGESVDM-HCEAQEAEGTQKPTITWQRRDGVALPKNRVK------IVGGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l-~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+.....+..|+.+.+ .|.+. .+.|.+.|.|+.+........... ...+.+.+......|.-.++|.+...
T Consensus 6 ~~~~~~~~~~g~~~~vA~C~sa--~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 6 SPGPSLLIDGGNGTTLAACCAA--EGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred CCCCeeEeecCcceeEEEEEcc--CCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 3444445677888888 99985 899999999997432221110001 11224555444555666899999875
Q ss_pred c
Q psy535 230 V 230 (460)
Q Consensus 230 ~ 230 (460)
.
T Consensus 84 a 84 (97)
T cd07704 84 A 84 (97)
T ss_pred c
Confidence 3
No 378
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.04 E-value=0.07 Score=37.33 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=38.6
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE------EEecceEEEccccceeceEEEEEEecccce
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV------KIVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
.....+.|.+. .|.|.+.|.|+++.......... ....+.|.+......+.-.|+|.+.+..-.
T Consensus 15 ~~~~va~C~s~--~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 15 EPVTVATCVSA--NGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CccEEEEEECC--CCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 34577899985 89999999999841111111110 111224555544555556899999887543
No 379
>KOG4367|consensus
Probab=95.91 E-value=0.019 Score=50.21 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=65.3
Q ss_pred eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcE
Q psy535 255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 334 (460)
Q Consensus 255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~ 334 (460)
.....++++.|..|...+.+. .+|+++..++..+.+..+-.. ..+.++|++|.-...|.-++.|.|..|.+..|..+
T Consensus 449 ~t~nns~t~~wkqp~~~~~~~-dg~~leld~g~~g~frevy~g--~etmctvdglhfns~y~arvka~n~tg~s~ys~tl 525 (699)
T KOG4367|consen 449 CTHNNSATLSWKQPPLSTVPA-DGYILELDDGNGGQFREVYVG--KETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 525 (699)
T ss_pred hccCCceEEEeecCCCCCCCC-cceEEEeecCCCCceeEEEec--CceeEEecceecchhHHHHHHHhhccCCCccccee
Confidence 455678999999443333333 799999988877776666443 57889999999999999999999999999999988
Q ss_pred EEEccC
Q psy535 335 VVKTKG 340 (460)
Q Consensus 335 ~~~~~~ 340 (460)
...+..
T Consensus 526 ~lqts~ 531 (699)
T KOG4367|consen 526 VLQTSE 531 (699)
T ss_pred Eeeecc
Confidence 877653
No 380
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=95.91 E-value=0.054 Score=39.83 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=41.9
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCC--cc--C---------------CcccEEEe--c--c--eEEEccccce
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDG--VA--L---------------PKNRVKIV--G--G--NITIEGLRRV 217 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~--~~--~---------------~~~~~~~~--~--~--~l~i~~~~~~ 217 (460)
.+..|+.++|.|..... ......+.|++... .+ + ...++... . . .|.|.++..+
T Consensus 8 ~v~~G~~vtL~C~~~~~-~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 86 (117)
T cd04981 8 LVKPGQSLKLSCKASGF-TFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE 86 (117)
T ss_pred EEcCCCCEEEEEEEeCC-CcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence 57889999999987311 11245688987432 11 0 01233321 1 1 5899999999
Q ss_pred eceEEEEEEec
Q psy535 218 DFGYYECVVSN 228 (460)
Q Consensus 218 ~~g~y~C~a~n 228 (460)
|+|.|.|.+..
T Consensus 87 Dsa~YyCa~~~ 97 (117)
T cd04981 87 DTAVYYCARGL 97 (117)
T ss_pred HCEEEEEEEEc
Confidence 99999998764
No 381
>KOG1480|consensus
Probab=95.88 E-value=0.0073 Score=57.08 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=47.0
Q ss_pred CCcccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe
Q psy535 1 MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58 (460)
Q Consensus 1 ~~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 58 (460)
|++.+...+..+....++.|+|..+++.|.|.|+|+|.|..+...+..+.+.|.....
T Consensus 166 k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~gg 223 (909)
T KOG1480|consen 166 KNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNGG 223 (909)
T ss_pred ccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEEcCc
Confidence 4566666677777778889999999999999999999999888777777777765433
No 382
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.81 E-value=0.031 Score=38.92 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=38.8
Q ss_pred EEEeeCCeecCccc-cccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 89 VTWTKDKRLLEPYQ-TKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 89 v~W~~~~~~~~~~~-~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
++|..+........ +.++. ..++-+|.|..++..|+|.|.-++++..|.. ....+.|.|
T Consensus 46 ltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqVsV 106 (108)
T PF11465_consen 46 LTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQVSV 106 (108)
T ss_dssp EEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEEEE
T ss_pred EEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcE-EEEEEEEEe
Confidence 67766655543311 22332 2345589999999999999999999988876 566666654
No 383
>PHA02982 hypothetical protein; Provisional
Probab=95.77 E-value=0.029 Score=44.12 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=49.1
Q ss_pred eeecceeeEEEEEEEecCCCCCeEEEeeCCee-cCccc----------------cc--cE-EEeecCeEEEeecCCCCCe
Q psy535 66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL-LEPYQ----------------TK--DI-VVMQNGSLLFTRVNQNHQG 125 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-~~~~~----------------~~--~~-~~~~~~~l~i~~~~~~d~G 125 (460)
.....+++|.|.|.........+..|++++.. +.... .. +. .....++|+|.++..+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 34567899999999755555567899985432 21000 00 01 1122357999999999999
Q ss_pred EEEEEEEcCCCCcc
Q psy535 126 RYTCTPYNAHGTQG 139 (460)
Q Consensus 126 ~y~C~~~~~~g~~~ 139 (460)
-|+|.+....+..+
T Consensus 114 CYtc~~ks~~~k~E 127 (251)
T PHA02982 114 CFTCEAKDAEGKEE 127 (251)
T ss_pred ceEEEEecCCCchh
Confidence 99999987665544
No 384
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.74 E-value=0.018 Score=47.30 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=37.8
Q ss_pred CeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 87 QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 87 ~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
|.+.|..++..... ....+.+...|.|.+.+.+..++|.|+|.....
T Consensus 13 P~y~W~GP~g~~l~-gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 13 PTYLWTGPNGKPLS-GNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CceEEECCCCcccC-CCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 37999996544432 456778888999999999999999999988654
No 385
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.64 E-value=0.098 Score=36.54 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=38.8
Q ss_pred eEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE------EecceEEEccccceeceEEEEEEecccceee
Q psy535 169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK------IVGGNITIEGLRRVDFGYYECVVSNEVATIV 234 (460)
Q Consensus 169 ~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 234 (460)
.+.+.|.+. .+.|.+.|.|+++........... ...+.|.+......+.-.|+|++.+......
T Consensus 17 ~~va~C~s~--~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~ 86 (95)
T cd07703 17 VPVAKCVSA--NGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEP 86 (95)
T ss_pred cEEEEEEcC--CCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 577899884 799999999998522111111000 1122455555555556689999998754433
No 386
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=95.48 E-value=0.17 Score=36.01 Aligned_cols=88 Identities=24% Similarity=0.393 Sum_probs=56.5
Q ss_pred CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419 (460)
Q Consensus 342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (460)
+|+.|.++...... ..++.-|++....+.+ ..|.+.|...+. |.....-. ...
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~-~~y~L~Y~~~~~~~~eCp~~~------------------------~~~ 61 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGNLP-TNYTLFYKKEGEEWKECPDYS------------------------TSG 61 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSSTST-CEEEEEEEETTSEEEEESESS------------------------TTE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCCCC-CcEEEEEEeCCCCCccCCCeE------------------------ecC
Confidence 37788888887666 5899999998775543 339999997642 33332100 000
Q ss_pred CCc-----ceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535 420 PGS-----TQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455 (460)
Q Consensus 420 ~~~-----~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~ 455 (460)
.+. ..|.-.+..-...|.|+|.|.|..|.- .|+.+
T Consensus 62 ~ns~~~~~C~F~~~~t~lf~~y~i~V~a~~~~~~~-~s~~l 101 (104)
T PF09067_consen 62 PNSTVRHICYFPKSDTSLFVPYCIQVEATNALGSI-TSRVL 101 (104)
T ss_dssp TTEEEEEEEEE-CCGCSSSSEEEEEEEEEETTEEE-EEEEE
T ss_pred CCCceeEEEEcCCCCeEEEEEEEEEEEeccCCCcE-EeeEE
Confidence 112 344445788899999999999998743 34444
No 387
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.36 E-value=0.12 Score=35.97 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=38.6
Q ss_pred ccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCcccEEE---------ecceEEEccccceece-EEEEEEecc
Q psy535 163 QRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKNRVKI---------VGGNITIEGLRRVDFG-YYECVVSNE 229 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~~~g-~y~C~a~n~ 229 (460)
.+..|..+++.|.+. ...|. ..+.|++ +...+....+.. ....+.+... .+|.| .|+|.|.-.
T Consensus 11 ~l~~G~~vtv~C~v~--~v~P~~~l~v~Llk-G~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVP--DVYPFDRLEIELLK-GETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEec--CcccCCceEEEEec-CcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 346899999999995 55555 6899987 443332221111 1123455443 55655 899998743
No 388
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.24 E-value=0.074 Score=37.74 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=21.2
Q ss_pred ccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCC
Q psy535 163 QRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDG 194 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~ 194 (460)
....++.++|.|.+. .-.| ...+.|++++.
T Consensus 13 ~~~~~~~~~L~C~~~--gfyP~~i~v~W~~~g~ 43 (100)
T cd07699 13 ELEKSGKATLVCLIN--DFYPGFATVQWKVDGA 43 (100)
T ss_pred HHccCCCcEEEEEEE--eEECCCCEEEEEECCE
Confidence 444577899999994 3344 45899999544
No 389
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.24 E-value=0.11 Score=33.00 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=36.2
Q ss_pred CCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEec
Q psy535 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 228 (460)
..+.|.|.|.. ...+.|.+ +...... .+.++.+......-.|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~-------~tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG-------ATNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC-------CCcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc
Confidence 45678999974 14599998 5444322 155688888888889999999877
No 390
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.10 E-value=0.083 Score=36.93 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCeEEEEeeeeccCCC-CCC-eeEEEcCCCccCCcc---cEEE-ecceEE---EccccceeceEEEEEEeccc
Q psy535 167 GESVDMHCEAQEAEGT-QKP-TITWQRRDGVALPKN---RVKI-VGGNIT---IEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~~~~~~---~~~~-~~~~l~---i~~~~~~~~g~y~C~a~n~~ 230 (460)
++.++|.|.+ .|. |.. .+.|.+++....... .... .++++. ...+...+...|+|.+.+..
T Consensus 14 ~~~~~L~C~a---~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHA---TGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEE---EEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6789999999 564 543 899999553222111 1111 122221 22333446788999987643
No 391
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.01 E-value=0.29 Score=35.23 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=55.6
Q ss_pred CCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeecc-CCCCceEEEccCc--cCccEEEEEEE
Q psy535 245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-PPGSTQITINRLT--PATTYEFQVVG 321 (460)
Q Consensus 245 ~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~--~~~~~~~~~~a 321 (460)
...+|.++..........|.|+++....+ ...|.++|+..+...|..+... ......+-+.+.. ....|.++|+|
T Consensus 21 ~lp~P~nv~~~s~nf~~iL~W~~~~~~~~--~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A 98 (107)
T PF01108_consen 21 SLPAPQNVTVDSVNFKHILRWDPGPGSPP--NVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRA 98 (107)
T ss_dssp SGSSCEEEEEEEETTEEEEEEEESTTSSS--TEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEE
T ss_pred cCCCCCeeEEEEECCceEEEeCCCCCCCC--CeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEE
Confidence 44577888888888999999998443332 3689999997777888887311 1144667777644 57788889988
Q ss_pred EcC
Q psy535 322 KNE 324 (460)
Q Consensus 322 ~n~ 324 (460)
.-.
T Consensus 99 ~~~ 101 (107)
T PF01108_consen 99 EVG 101 (107)
T ss_dssp EET
T ss_pred EeC
Confidence 754
No 392
>PHA03269 envelope glycoprotein C; Provisional
Probab=94.84 E-value=3.1 Score=38.01 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=59.4
Q ss_pred EEEeecCCCCCeEEEEEEEc-CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcC
Q psy535 114 LLFTRVNQNHQGRYTCTPYN-AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192 (460)
Q Consensus 114 l~i~~~~~~d~G~y~C~~~~-~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~ 192 (460)
|.|.++...++|.|+=.+.+ ..+.......++|....+|.+.+.+.. +..|+.....|.+.+.-......+.|+.+
T Consensus 291 L~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P---VL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 291 LHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP---VLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred eEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc---cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 99999999999999876543 334445667888888899988887764 57899999999984221222348999996
Q ss_pred CCcc
Q psy535 193 DGVA 196 (460)
Q Consensus 193 ~~~~ 196 (460)
++..
T Consensus 368 g~~V 371 (566)
T PHA03269 368 FGNI 371 (566)
T ss_pred Cccc
Confidence 4443
No 393
>KOG4802|consensus
Probab=94.59 E-value=0.13 Score=45.16 Aligned_cols=92 Identities=20% Similarity=0.335 Sum_probs=50.9
Q ss_pred CCCCcceEEEe--ecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535 343 PGPPRNVSVTE--VNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420 (460)
Q Consensus 343 P~~p~~~~~~~--~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (460)
+.+|.+..+.. ...++.+.|..... +.-|.+.+..-..|..... -.+.+...|-.+... .
T Consensus 145 ~l~Pr~k~~y~r~~~g~~av~w~~~~~----~~v~~~~~~vr~~w~~g~h-------------ase~~~thwQtv~~t-~ 206 (516)
T KOG4802|consen 145 QLPPRPKILYFRRSRGSHAVDWKIESS----LLVYYVHVEVRSHWGRGFH-------------ASELGPTHWQTVEKT-M 206 (516)
T ss_pred CCCCcchhhhhhhccCceeeeeeeccc----cceeeeehhhhhhhccccc-------------ccccccccceeeeec-C
Confidence 44555544433 23579999987543 2333333332222221111 012233445444432 2
Q ss_pred CcceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLS 452 (460)
Q Consensus 421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s 452 (460)
....+..+++.||.+|+|||.|+|..|.-.+|
T Consensus 207 ~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs 238 (516)
T KOG4802|consen 207 EENTYIFTDMRPGRWYEFRVAAVNAYGFRGFS 238 (516)
T ss_pred CCceeeeeecCcceeEEEEEeeeecccccccC
Confidence 23377888999999999999999998753333
No 394
>KOG4806|consensus
Probab=94.58 E-value=0.78 Score=39.60 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=85.5
Q ss_pred EEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEc---cCCCCCCCcceEEEeec---ceEEEEecCCCCCCccceEEEE
Q psy535 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT---KGPKPGPPRNVSVTEVN---NGFVISWQPPLERASLIQYYLI 377 (460)
Q Consensus 304 ~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~---~~~~P~~p~~~~~~~~~---~~v~l~W~~~~~~~~~i~~y~i 377 (460)
+.-..+.+...|.++....|....- ....+-..+ ..+.|.-|.+-++.... ++.+|.|....+. -..|-|
T Consensus 286 ~~Qfvv~~~~~~~~rf~~~ndde~~-~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~---~~kyCI 361 (454)
T KOG4806|consen 286 IRQFVVLPGERYLMRFEPSNDDEAL-QKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE---ELKYCI 361 (454)
T ss_pred eeEEEecCCCceEEEEEecCCchhh-heeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcch---heeEEE
Confidence 4455677899999999998875321 111121221 22447778887777664 5799999976542 456777
Q ss_pred EEEEcCCeeeeccccCCCCccccccc--cee---cCceeeeeec---cCCCCcceEEECCCCcCceEEEEEEEeecCCCC
Q psy535 378 KYRTDGSWKTLNKGQIRPEENSYLGE--YRE---QGNKDWLPIP---VTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449 (460)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~---~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s 449 (460)
+.+...+ ...... ..+.|=+. .+. .---.|.... ..+.+..+-+|.||.|+..|.+-|.|.-.+|..
T Consensus 362 y~~~~~~-~e~~v~----~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~ 436 (454)
T KOG4806|consen 362 YVFNLPQ-RERSVV----DFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKP 436 (454)
T ss_pred EEecccc-hhhhhh----hhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcc
Confidence 7665332 000000 01111000 000 0111244432 222334566799999999999999999999988
Q ss_pred CCCceeEeec
Q psy535 450 MLSNIVVVKT 459 (460)
Q Consensus 450 ~~s~~~~~~T 459 (460)
-+-..+.++|
T Consensus 437 lpyqa~~v~t 446 (454)
T KOG4806|consen 437 LPYQALTVHT 446 (454)
T ss_pred ccceeEEEEe
Confidence 7766666665
No 395
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.36 E-value=3.5 Score=36.57 Aligned_cols=40 Identities=15% Similarity=0.360 Sum_probs=29.9
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~ 60 (460)
++.+.+++..|.|.|+|.......+.....+.|.| .|.+.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrV--mPKId 121 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRK--APKID 121 (500)
T ss_pred EEEecCcccccCCcEEEEEEeCCceeEEEEEEEEE--cccee
Confidence 68889999999999999999877665555555544 45543
No 396
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.25 E-value=0.33 Score=34.08 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=22.4
Q ss_pred ccCCCCeEEEEeeeeccCCC--C-CCeeEEEcCCCc
Q psy535 163 QRKVGESVDMHCEAQEAEGT--Q-KPTITWQRRDGV 195 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~--p-~~~~~W~~~~~~ 195 (460)
.+..++.++|.|.+ .|. | ...++|.++++.
T Consensus 10 ~l~~~~~~tLtC~v---~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 10 QLLLTKSVKLTCLV---TNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred HhccCCCeEEEEEE---eCCCCCCCcEEEEEECCeE
Confidence 45678999999999 555 3 347899996543
No 397
>PHA03042 CD47-like protein; Provisional
Probab=94.22 E-value=0.34 Score=40.25 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=39.7
Q ss_pred eeeEEEEEEEecCC----CCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 71 RLQGVVQCHIKANP----TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 71 g~~~~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
++++.+.|.+...- ....+.|..++..+-..... +..+|.+.. ...-.|+|+|+|.+....
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----n~aSL~~~f-~~~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----NTSSLKFNF-SKNLSGNYTCEAINKFNK 95 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----cceEEEEec-cccCCCceeEEEeecccC
Confidence 67899999985521 12369999999887532222 113466554 334489999999875543
No 398
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=94.12 E-value=0.24 Score=32.88 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=31.8
Q ss_pred EEEEeeeeccCCCCC-CeeEEEcCCCccCCccc---EEE-ecc------eEEEccccceeceEEEEEEecc
Q psy535 170 VDMHCEAQEAEGTQK-PTITWQRRDGVALPKNR---VKI-VGG------NITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~~~---~~~-~~~------~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
++|.|.+. .-.|. ..+.|++++........ ... .++ .|.+......+...|+|.+...
T Consensus 2 ~~L~C~a~--gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVS--GFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEE--eEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 68999994 33454 58999994432222111 011 122 2444333445567899988754
No 399
>PHA03273 envelope glycoprotein C; Provisional
Probab=93.99 E-value=4.7 Score=36.69 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=59.8
Q ss_pred EEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEc
Q psy535 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQR 191 (460)
Q Consensus 114 l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~ 191 (460)
|.|..+...++|.|+=...+..+.......++|....+|.+.+.+.. +..|+.....|.+. .-.| ...+.|+.
T Consensus 200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P---vL~Ge~y~A~C~aa--~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP---SLKGENYRAVCVVA--SYFPHSSVKLRWYK 274 (486)
T ss_pred eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc---cccCCCceEEEEee--eecCCCceEEEEEe
Confidence 99999999999999877656555555567777777889998888764 57899999999984 2333 34899999
Q ss_pred CCCcc
Q psy535 192 RDGVA 196 (460)
Q Consensus 192 ~~~~~ 196 (460)
++...
T Consensus 275 dg~~V 279 (486)
T PHA03273 275 NAKEV 279 (486)
T ss_pred CCeec
Confidence 55533
No 400
>PHA03286 envelope glycoprotein E; Provisional
Probab=93.99 E-value=1.9 Score=38.84 Aligned_cols=76 Identities=12% Similarity=-0.035 Sum_probs=50.3
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec-----CCeeE--------------EcceeeeecceeeEEEEE
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-----PAKVT--------------FTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~p~~~--------------~~~~~~~~~~g~~~~l~C 78 (460)
..|.|.+++.+++|.|+-...|..|......+.|.|.. +|.+. ..+.......|+++.+.-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 37999999999999999999988777666778888842 11111 123334456688886665
Q ss_pred EEe-cC---CCCCeEEEee
Q psy535 79 HIK-AN---PTFQYVTWTK 93 (460)
Q Consensus 79 ~~~-~~---~~~~~v~W~~ 93 (460)
... .. +-...+.|+.
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEeecccCCCceEEEEEEE
Confidence 543 11 1123588984
No 401
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=93.84 E-value=0.25 Score=31.78 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=21.1
Q ss_pred eEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535 424 QITINRLTPATTYEFQVVGKNELGDGMLS 452 (460)
Q Consensus 424 ~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s 452 (460)
.+.+.+|.|| .|.|+|+|.|..|.....
T Consensus 30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNLPPG-KYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES--SE-EEEEEEEEEETTS-B-SS
T ss_pred EEEEEeCCCE-EEEEEEEEECCCCCcCcc
Confidence 8889999988 999999999999875443
No 402
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.84 E-value=0.2 Score=35.64 Aligned_cols=29 Identities=14% Similarity=0.396 Sum_probs=20.4
Q ss_pred ccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCC
Q psy535 163 QRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDG 194 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~ 194 (460)
.+..+..++|.|.+ .|. |. ..+.|.+++.
T Consensus 12 ~~~~~~~~tL~C~a---~gFyP~~i~v~W~k~g~ 42 (102)
T cd05768 12 ELSLQETATLTCLV---KGFSPSDIFVKWLQNGQ 42 (102)
T ss_pred HhCcCCceEEEEEE---eeEeCCCCEEEEEECCE
Confidence 34457889999999 454 33 3789999543
No 403
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.81 E-value=0.34 Score=42.22 Aligned_cols=22 Identities=14% Similarity=0.459 Sum_probs=18.6
Q ss_pred eEEEEEEEecC-CCCCeEEEeeC
Q psy535 73 QGVVQCHIKAN-PTFQYVTWTKD 94 (460)
Q Consensus 73 ~~~l~C~~~~~-~~~~~v~W~~~ 94 (460)
.++|+|.|.|. |....++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996 55567999999
No 404
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=93.81 E-value=0.42 Score=34.82 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=20.7
Q ss_pred ccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCC
Q psy535 163 QRKVGESVDMHCEAQEAEGTQK-PTITWQRRDG 194 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~ 194 (460)
....++.++|.|.+. .-.|. ..+.|++++.
T Consensus 14 e~~~~~~~tL~Cla~--gFyP~~I~V~W~kng~ 44 (115)
T cd05769 14 EIRNKRKATLVCLAT--GFYPDHVSLSWKVNGK 44 (115)
T ss_pred HhccCCCcEEEEEEE--eEeCCCcEEEEEECCE
Confidence 344567799999994 33454 4899999543
No 405
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=93.73 E-value=4.2 Score=35.22 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=64.9
Q ss_pred CCceEEEccCccCccEEEEEEEEcCC-CCCCCCCcEEEEccCCCCCCCcceE-----EEeec--ce-EEEEecCCC--CC
Q psy535 300 GSTQITINRLTPATTYEFQVVGKNEL-GDGMLSNIVVVKTKGPKPGPPRNVS-----VTEVN--NG-FVISWQPPL--ER 368 (460)
Q Consensus 300 ~~~~~~i~~l~~~~~~~~~~~a~n~~-G~~~~s~~~~~~~~~~~P~~p~~~~-----~~~~~--~~-v~l~W~~~~--~~ 368 (460)
..+.++|.+|.|++.|.|.+.|.|.. |.+..-....+.+.+....+|..++ ....+ .. -..++..|. ..
T Consensus 13 ~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~~ 92 (300)
T PF10179_consen 13 QKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSST 92 (300)
T ss_pred CCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCCCC
Confidence 45789999999999999999999985 3222211222333222233333322 11222 12 344555442 10
Q ss_pred CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCC
Q psy535 369 ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447 (460)
Q Consensus 369 ~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G 447 (460)
...+ .+.|.-+ .|. ..++...+|..-... ....+-..+.+.++.|+..|.+++.+.|...
T Consensus 93 ~~~~-~l~v~~C-~G~---------------V~v~i~r~gk~l~~~--~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e 152 (300)
T PF10179_consen 93 HQSL-WLFVQSC-SGS---------------VRVEISRNGKILLSQ--KNVEGLRHFRLSGVKPGERYLIRIQISNSDE 152 (300)
T ss_pred CccE-EEEEEeC-CCe---------------EEEEEEECCeEEeee--ecccceEEEEECCCCCCCeEEEEEEccCCCC
Confidence 1111 1111111 111 111111122221111 1123567899999999999999998877543
No 406
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=93.48 E-value=1.7 Score=42.60 Aligned_cols=125 Identities=10% Similarity=0.012 Sum_probs=68.1
Q ss_pred CCceEEEccCccCccEEEEEEEEcCCCCCCCC---CcEEEEccCCCCCCCcceEEEeecceEEEEecCCCCCCccceEEE
Q psy535 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLS---NIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYL 376 (460)
Q Consensus 300 ~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s---~~~~~~~~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~ 376 (460)
....+.+.++.+ -.|..+++|.|..|....- ....+..+..+|..+..+......-.+.+.|--|.. .-.+..-.
T Consensus 658 ~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it~~~~l~v~dPt~-~~d~~~se 735 (952)
T COG4733 658 SAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIITLVIRLVVGDPTG-AVDITSTE 735 (952)
T ss_pred cccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEEeeeeEEEecCCc-ceEEeeee
Confidence 456688888877 7889999999999865332 233343333333333334444444567888876641 11233333
Q ss_pred EEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCC
Q psy535 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML 451 (460)
Q Consensus 377 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~ 451 (460)
+++.....-.. ...+. ..-..| ...=.+|+++..|.|+++++|..|.+.+
T Consensus 736 i~~s~~~d~~~---------~Ar~L-----G~~~~~-----------~~~~~~i~~g~~~~F~~R~Vn~vG~~~~ 785 (952)
T COG4733 736 IRSAVIADGNF---------QARSL-----GNLNYP-----------GLFSVGIQAGLTFWFRNRNVDLVGNNDK 785 (952)
T ss_pred eeeeccccchh---------HHhhh-----hccccc-----------cccccCcCCCceEEEEeeeccccccccc
Confidence 33332111000 00000 000011 1111689999999999999999997644
No 407
>KOG4597|consensus
Probab=92.96 E-value=0.13 Score=46.06 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=58.8
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEee---CCeecC--cc-ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTK---DKRLLE--PY-QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~---~~~~~~--~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
....+..+++..++|-+.|.+.+ .|+|.+ |+..+. +. ...+..+.+...|.|-+....|+|.|+|.+.+..|.
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred chhhcccchhhcccccccCCcCc-eeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence 33456678899999999998776 699987 333221 10 112333444456999999999999999999999888
Q ss_pred cceeeEEEEE
Q psy535 138 QGSSGQMEVL 147 (460)
Q Consensus 138 ~~~~~~~~v~ 147 (460)
......+.+.
T Consensus 283 ~~rdv~c~s~ 292 (560)
T KOG4597|consen 283 LRRDVPCSSV 292 (560)
T ss_pred eeccceeeee
Confidence 7666555543
No 408
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=92.86 E-value=0.53 Score=32.87 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=18.8
Q ss_pred CCCCeEEEEeeeeccCC-CC-CCeeEEEcCCC
Q psy535 165 KVGESVDMHCEAQEAEG-TQ-KPTITWQRRDG 194 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~~~-~p-~~~~~W~~~~~ 194 (460)
..+...+|.|.+ .| .| ...+.|.+++.
T Consensus 13 ~~~~~~tL~C~a---~gFyP~~I~v~W~~~g~ 41 (94)
T cd05767 13 ELGEPNTLICFV---DNFFPPVLNVTWLKNGV 41 (94)
T ss_pred cCCCCeEEEEEE---EEEECCcCEEEEEECCe
Confidence 345667999999 45 34 34889998544
No 409
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=92.73 E-value=1 Score=31.49 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=20.0
Q ss_pred CCCCeEEEEeeeeccCCCCCC-eeEEEcCCC
Q psy535 165 KVGESVDMHCEAQEAEGTQKP-TITWQRRDG 194 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~ 194 (460)
..|..++|.|.+. .-.|.. .+.|.+++.
T Consensus 12 ~~~~~~~L~C~~~--gFyP~~i~v~W~~~g~ 40 (94)
T cd05766 12 SLSHPHLLVCHVW--GFYPPEITVKWFKNGQ 40 (94)
T ss_pred cCCCCeEEEEEEe--eecCCCCEEEEEECCe
Confidence 4578899999994 234443 889999544
No 410
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=92.69 E-value=0.99 Score=39.78 Aligned_cols=117 Identities=16% Similarity=0.319 Sum_probs=68.8
Q ss_pred eeeeecceeeEEEEEEEec--CCCCCeEEEeeCCeecCcc---------------ccccEEE---------eecCeEEEe
Q psy535 64 TVQYLPFRLQGVVQCHIKA--NPTFQYVTWTKDKRLLEPY---------------QTKDIVV---------MQNGSLLFT 117 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~--~~~~~~v~W~~~~~~~~~~---------------~~~~~~~---------~~~~~l~i~ 117 (460)
....++.|..+.|.|.... +......+|+--|-++.|. ....+.+ +..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3345667999999998753 3444568999765544431 1111211 223579999
Q ss_pred ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCC-eEEEEeeeeccCC-CCCCeeEEEc
Q psy535 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGE-SVDMHCEAQEAEG-TQKPTITWQR 191 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~~~-~p~~~~~W~~ 191 (460)
.++.+.+|-|.|+|..+.-..+...-+.|. ..-.+. ....|. .....|-+- +. ..++++.|+-
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~--d~V~f~-------W~~e~~n~T~V~Cyv~--sy~~kp~si~wkv 416 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVA--DHVFFK-------WNTEGDNETKVACYAA--QYDMQPFSILWKS 416 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEec--cEEEEE-------EEeccCceEEEEEEEE--ecccCCceeEEEE
Confidence 999999999999998764443333333332 111111 112333 344678763 22 4556799987
No 411
>KOG3632|consensus
Probab=92.64 E-value=1.2 Score=44.29 Aligned_cols=136 Identities=23% Similarity=0.293 Sum_probs=85.6
Q ss_pred eeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccC
Q psy535 234 VQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPA 312 (460)
Q Consensus 234 ~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 312 (460)
.....|.+....+..|..+.+ .....+..++|.+......+. .|-+..+. ......-..+++.+|.++
T Consensus 660 ~lrc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~Hv------iyln~eE~-----~ps~a~~y~ytf~~lrpg 728 (1335)
T KOG3632|consen 660 QLRCILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNSNFLHV------IYLNAEEP-----RPSVAEMYNYTFMRLRPG 728 (1335)
T ss_pred cceeeEeccccccccchhhhhhhhhchhhheeeeecCCCccee------eecCCccC-----CCchhhhhHHHHhccCCC
Confidence 344455565556667776654 556678899998754333321 22222211 111113456788899999
Q ss_pred ccEEEEEEEEcC-CC--------CCCCCCcEEEEccC-CCCCCCcceEEEeec--ceEEEEecCCC------CCCccceE
Q psy535 313 TTYEFQVVGKNE-LG--------DGMLSNIVVVKTKG-PKPGPPRNVSVTEVN--NGFVISWQPPL------ERASLIQY 374 (460)
Q Consensus 313 ~~~~~~~~a~n~-~G--------~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~--~~v~l~W~~~~------~~~~~i~~ 374 (460)
+.|..++.|.-. .+ ++.....+.+++.. ++|.||.++++.... ..+.++|.++- .++-.+++
T Consensus 729 t~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtg 808 (1335)
T KOG3632|consen 729 TDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTG 808 (1335)
T ss_pred CccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeee
Confidence 999999988755 11 12233445565554 457899999998775 47999999973 22347889
Q ss_pred EEEEEE
Q psy535 375 YLIKYR 380 (460)
Q Consensus 375 y~i~~~ 380 (460)
|.|+..
T Consensus 809 Yavyad 814 (1335)
T KOG3632|consen 809 YAVYAD 814 (1335)
T ss_pred eeeeeC
Confidence 999776
No 412
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=92.43 E-value=0.66 Score=32.28 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=33.5
Q ss_pred cCCCCeEEEEeeeeccCC-CC-CCeeEEEcCCCccCCcccEE----EecceEEE---ccccceeceEEEEEEecc
Q psy535 164 RKVGESVDMHCEAQEAEG-TQ-KPTITWQRRDGVALPKNRVK----IVGGNITI---EGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 164 ~~~g~~~~l~C~~~~~~~-~p-~~~~~W~~~~~~~~~~~~~~----~~~~~l~i---~~~~~~~~g~y~C~a~n~ 229 (460)
+..|...+|.|.+ .| .| ...+.|.++ +..+...... ..++++.+ ..+...+...|.|.+...
T Consensus 12 ~~~g~~~~L~C~a---~gFyP~~i~v~W~~d-g~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYV---TGFHPPDIEIRLLKN-GVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEE---EEEeCCCCEEEEEEC-CEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 3456777999999 45 33 347899994 4443321100 11223222 223344556788887653
No 413
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=92.21 E-value=0.6 Score=32.83 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=21.2
Q ss_pred ccCCCCeEEEEeeeeccCC-C-C-CCeeEEEcCCC
Q psy535 163 QRKVGESVDMHCEAQEAEG-T-Q-KPTITWQRRDG 194 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~-~-p-~~~~~W~~~~~ 194 (460)
....+..++|.|.+. + . | ...+.|.++++
T Consensus 15 ~l~~~~~atLtClV~---~f~~P~~i~V~W~~~g~ 46 (99)
T cd04986 15 DLLLGSSASLTCTLS---GLRDPEGAVFTWTPSGG 46 (99)
T ss_pred HhCcCCccEEEEEEe---ccCCCCCeEEEEEECCc
Confidence 345688899999994 4 3 3 35899998654
No 414
>PHA03283 envelope glycoprotein E; Provisional
Probab=92.11 E-value=3.6 Score=38.07 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=30.8
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF 55 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 55 (460)
+.|.|.+++++++|.|+-..++..+ .....+.|.|..
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 3799999999999999999998766 446667788865
No 415
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.01 E-value=0.19 Score=37.00 Aligned_cols=77 Identities=14% Similarity=0.237 Sum_probs=41.0
Q ss_pred CCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCC--cc-c-E--------EE-----ecceEEEccccceeceEEEEE
Q psy535 165 KVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALP--KN-R-V--------KI-----VGGNITIEGLRRVDFGYYECV 225 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~--~~-~-~--------~~-----~~~~l~i~~~~~~~~g~y~C~ 225 (460)
.=.+++.|.|.+... ...+.-.+.|..++...+. +. . . .+ .+.+|.+.....- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 447789999998421 1122346899985543321 00 0 0 01 0124666654433 7999999
Q ss_pred EecccceeeeeeEEEEe
Q psy535 226 VSNEVATIVQAAQLVVE 242 (460)
Q Consensus 226 a~n~~g~~~~~~~l~v~ 242 (460)
+.....+.+..+.|...
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99887777777777653
No 416
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=92.00 E-value=1.2 Score=31.07 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=33.6
Q ss_pred CCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCCccc-----EEEecce------EEEccccceeceEEEEEEeccc
Q psy535 166 VGESVDMHCEAQEAEGTQK-PTITWQRRDGVALPKNR-----VKIVGGN------ITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~~~-----~~~~~~~------l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
....++|.|.+. .-.|. ..+.|.+++. ...... ....+++ |.+..-...+...|.|.+....
T Consensus 13 ~~~~~~L~C~a~--gFyP~~I~vtW~~dg~-~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 13 TSETIQLLCLIS--GYTPGTIEVEWLVDGQ-VATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCCEEEEEEEE--eEECCCCEEEEEECCE-ECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 456689999994 22444 5899998544 331111 1111222 3333222224568999987654
No 417
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=91.33 E-value=6.9 Score=31.83 Aligned_cols=96 Identities=17% Similarity=0.290 Sum_probs=47.9
Q ss_pred CeEEEeeCCeecCccccc-cEEEeecC------eEEEe-ecCCCCCeEEEEEEE-cCCCCcce--eeEEEEEeeCCCcee
Q psy535 87 QYVTWTKDKRLLEPYQTK-DIVVMQNG------SLLFT-RVNQNHQGRYTCTPY-NAHGTQGS--SGQMEVLVRKPPAFT 155 (460)
Q Consensus 87 ~~v~W~~~~~~~~~~~~~-~~~~~~~~------~l~i~-~~~~~d~G~y~C~~~-~~~g~~~~--~~~~~v~v~~~p~~~ 155 (460)
..+.|+.||.++.+.... ......+| +|.+. +...+..-..+|.+. ........ ++.+.-.|..+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 368999999988753221 11222223 35552 223333456899874 33222222 233333455566555
Q ss_pred eCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCC
Q psy535 156 IKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDG 194 (460)
Q Consensus 156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~ 194 (460)
+. ...| ...|.+ .--|. ..+.|.-++.
T Consensus 87 v~------F~~g---~AVC~A---~CVP~~~v~l~W~v~d~ 115 (211)
T PF02124_consen 87 VR------FEDG---YAVCTA---RCVPRGNVTLRWSVGDD 115 (211)
T ss_pred EE------ecCC---EEEEEc---ceeeCCCeEEEEEECCc
Confidence 43 2222 234655 33332 5899997554
No 418
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=91.18 E-value=4.1 Score=35.41 Aligned_cols=119 Identities=19% Similarity=0.157 Sum_probs=65.6
Q ss_pred ecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCC-CCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE
Q psy535 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP-GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335 (460)
Q Consensus 257 ~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~ 335 (460)
....+.+-|.|..+-. + ..|++....+... +........ -...+.-.++.....|.+.+.|.+..+.-..+....
T Consensus 82 ~~~~~~~~w~~~~d~~--~-~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gV 157 (343)
T COG3401 82 RPKSVKVFWSPHPDVS--V-GKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGV 157 (343)
T ss_pred CcceeeecccccCCCC--C-CeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeee
Confidence 3456899999754322 2 5788877665543 222221110 112344457888899999999998876544442222
Q ss_pred EEccCCCCCCCcceEEEee-cceEEEEecCCCCCCccceEEEEEEEEcC
Q psy535 336 VKTKGPKPGPPRNVSVTEV-NNGFVISWQPPLERASLIQYYLIKYRTDG 383 (460)
Q Consensus 336 ~~~~~~~P~~p~~~~~~~~-~~~v~l~W~~~~~~~~~i~~y~i~~~~~~ 383 (460)
-.+....|..-.+++++.. .+.+.|+|+.+...+ .|+|+-...+
T Consensus 158 E~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~~----yy~IY~~~~g 202 (343)
T COG3401 158 EATPKAEPKEITNVRVSFDLGNNIELSEDGSEAED----YYRIYASDSG 202 (343)
T ss_pred ecccccCCceeeeeeeecCCCCcceeeccCccccc----eEEEeccCCc
Confidence 1111122222223333332 257999999875433 7888666554
No 419
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=90.99 E-value=0.36 Score=34.77 Aligned_cols=31 Identities=6% Similarity=0.279 Sum_probs=25.5
Q ss_pred ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEE
Q psy535 8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVS 38 (460)
Q Consensus 8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~ 38 (460)
..+|+++..+. +|+|.+++.+|++.|.|...
T Consensus 59 ~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 59 SLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred cCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence 45777776663 89999999999999999763
No 420
>KOG4152|consensus
Probab=90.52 E-value=0.23 Score=45.08 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=30.4
Q ss_pred ECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 427 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 427 i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
-..|.+|+.|+|||.|.|..|.|++|....++|
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kT 683 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKT 683 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeee
Confidence 347999999999999999999999999998887
No 421
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.32 E-value=3.7 Score=27.59 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=24.8
Q ss_pred eEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535 88 YVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 88 ~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
.+.|+..+..+. .....+.......+|+|.++|.|.
T Consensus 28 ~~~l~~~~~k~~---------~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 28 SLFLENPGKKSL---------ETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEEECSSCEEE---------EESSEEEEESBTCGGSEEEEEEEE
T ss_pred hheeeccCcccc---------ccceEEEEecCCCCCCEEEEEEEc
Confidence 577776555432 223346667788899999999995
No 422
>PHA02982 hypothetical protein; Provisional
Probab=90.02 E-value=3.2 Score=33.20 Aligned_cols=84 Identities=10% Similarity=0.258 Sum_probs=52.9
Q ss_pred cccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC-CeeEEcceeeeecceeeEEEEEEEec
Q psy535 7 SLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-AKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 7 ~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
++.+.+.++-+| +|.|.++..+..|-|+|.+..+.+....-...|.|+.. ..+.+. .-...-.+.|-+..
T Consensus 86 ~~kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~------e~nNeT~V~CyVgS 159 (251)
T PHA02982 86 PYKDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILYVVE------EHNNETIITCFVGS 159 (251)
T ss_pred ccceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEEEEE------ecCCeEEEEEEEEe
Confidence 344556665554 99999999999999999999977654333556666322 122221 11223468898865
Q ss_pred CCCCCeEEEeeCCee
Q psy535 83 NPTFQYVTWTKDKRL 97 (460)
Q Consensus 83 ~~~~~~v~W~~~~~~ 97 (460)
...+ -..|.-+|..
T Consensus 160 ~~~d-vp~W~V~GVv 173 (251)
T PHA02982 160 KHGD-VPRFIVAGIV 173 (251)
T ss_pred ccCC-CccEEEeeEE
Confidence 4433 1388877653
No 423
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=89.62 E-value=22 Score=34.87 Aligned_cols=369 Identities=14% Similarity=0.142 Sum_probs=184.6
Q ss_pred EeecCCCCCeeE--EEEEEeCCCCc---ceeeeEEEEe--cCCeeE-Ec-ceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535 22 INPVGSDDSGLY--MCEVSNGIGEP---QAAQAYLNVE--FPAKVT-FT-PTVQYLPFRLQGVVQCHIKANPTFQYVTWT 92 (460)
Q Consensus 22 i~~~~~~d~G~Y--~C~~~~~~~~~---~~~~~~l~v~--~~p~~~-~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~ 92 (460)
+-.-.+..+|.| .|.|.+..... .......+|. .|+.+. +. ........|+.+.|.+.+.|+... .+.+.
T Consensus 247 ~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~l-lYrf~ 325 (667)
T PRK14081 247 IVSYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKEL-LYRFI 325 (667)
T ss_pred eEEEEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCce-EEEEE
Confidence 334456788998 55565543221 1223333443 233331 11 112234568899999999987654 35544
Q ss_pred eCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE--cCCCC--cceeeEEEEEeeCC---Cc-ee--eCCCccc
Q psy535 93 KDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY--NAHGT--QGSSGQMEVLVRKP---PA-FT--IKPEAMY 162 (460)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~--~~~g~--~~~~~~~~v~v~~~---p~-~~--~~~~~~~ 162 (460)
-.|..+... .. ..+..+.. .+..+|.|.-.+. +.... -.....+...+... |. +. +.+...
T Consensus 326 I~G~~~e~~---~Y--~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~- 396 (667)
T PRK14081 326 IKGKESEDS---GY--IRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGK- 396 (667)
T ss_pred ECCcEEeec---cc--cccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCC-
Confidence 455544211 11 12223433 3456899987654 33322 22344455555443 32 11 111112
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeE-EEcCCCccCCcccEEEecceEEEccccceeceEEEEEE--ecccce----eee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTIT-WQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVV--SNEVAT----IVQ 235 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~-W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a--~n~~g~----~~~ 235 (460)
....|+.+.+.|.+. .+. ...+. |.+.++......... .+..+. ..+..+|.|+..+ .+.... ...
T Consensus 397 ~~lvG~~i~i~v~a~--gg~-~~lY~f~ik~ng~~ve~~~Y~-~~~~~~---f~P~~~G~Y~IeV~vKdk~S~~~yD~~k 469 (667)
T PRK14081 397 HILKGEEIKIRVIAE--GGT-NLRYSFIIKKDGKEEEKIDYG-KNNWVN---FIPEEKGNYELEVRVKDKYSDKEYDAHT 469 (667)
T ss_pred ceEeCCeEEEEEEec--CCC-eEEEEEEEEECCEEEEEeecc-cccEEE---EEECCCeeEEEEEEEecccCchhcccce
Confidence 456799999999984 343 33332 344455443321111 122233 3345578887654 443332 244
Q ss_pred eeEEEEecCCCCCCCc-eee----eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCc
Q psy535 236 AAQLVVEGTQPHAPYN-ITG----VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLT 310 (460)
Q Consensus 236 ~~~l~v~~~~p~~p~~-~~~----~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 310 (460)
.+.+.|....|..-.. +.. ...+..++++... .++...... |.....+.|.....- .....+.+.
T Consensus 470 ~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~--~~~k~v~y~----y~~~~NG~~v~~t~Y-s~~~~ysf~--- 539 (667)
T PRK14081 470 IVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVII--QNTKDVLIK----YILKINGHKVEETDY-IKNKKYKFI--- 539 (667)
T ss_pred EEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEE--eCCCeEEEE----EEEEECCEEEEEeec-cccceEEEe---
Confidence 4556665544442221 111 1234455555542 333333223 332233445433321 134445544
Q ss_pred cCccEEEE--EEEEcCCCCCCCCCc--EEEEccCCCCCCCcceEEEeecc----eEEEEecCCCCCCccceEEEEEEEEc
Q psy535 311 PATTYEFQ--VVGKNELGDGMLSNI--VVVKTKGPKPGPPRNVSVTEVNN----GFVISWQPPLERASLIQYYLIKYRTD 382 (460)
Q Consensus 311 ~~~~~~~~--~~a~n~~G~~~~s~~--~~~~~~~~~P~~p~~~~~~~~~~----~v~l~W~~~~~~~~~i~~y~i~~~~~ 382 (460)
|...|.|. +.|.|....-..... +.+...+ +.|+.+..+..... .-.++|..-.. +|.-.-|+.+....
T Consensus 540 P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e--~~pi~nt~~~~~~~~~~~n~~~t~~~~~~-gg~~v~Yef~v~~~ 616 (667)
T PRK14081 540 PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVRE--ALPITNTKIKTSKKKFKCNEEVTFSVKSE-GGKDVCYEFYIMEK 616 (667)
T ss_pred ecCCceEEEEEEEcccccccccccceEEEEEEcC--CCCceeeEEEeecceEEcCCeEEEEEEcc-CCCcEEEEEEEEEC
Confidence 66666665 566777654333322 3333332 45666666554431 35777777666 44445899999999
Q ss_pred CCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCC
Q psy535 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449 (460)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s 449 (460)
|.|...+.= +....|++.-...| .|.+.|.+....+.-
T Consensus 617 g~w~~vq~y----------------------------s~k~~ysf~p~~~g-~Y~ilvl~ks~~~k~ 654 (667)
T PRK14081 617 GEWKLVQKY----------------------------SRKNYYSFMPFNKG-KYKVLVLCKSYYKKC 654 (667)
T ss_pred CcEEEEeec----------------------------cccCceEEEeccCC-cEEEEEEEecccccc
Confidence 988877641 12334444444444 799988888776654
No 424
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.44 E-value=3 Score=28.69 Aligned_cols=63 Identities=14% Similarity=0.412 Sum_probs=39.5
Q ss_pred ccCCCCeEEEEeeeeccC--CCCCCeeEEEcCCCccCCcccEEEecc---eEEEccccceeceEEEEEE
Q psy535 163 QRKVGESVDMHCEAQEAE--GTQKPTITWQRRDGVALPKNRVKIVGG---NITIEGLRRVDFGYYECVV 226 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~--~~p~~~~~W~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~g~y~C~a 226 (460)
.+..|+++++.|.+...- ......+.|+.++. .++..+.+..+. .+++.++.....-.|.|..
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~-~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE-KIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC-ESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCE-ECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 578899999999986321 13556899998555 777766665433 4666676666556677764
No 425
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=89.03 E-value=3.7 Score=29.24 Aligned_cols=80 Identities=26% Similarity=0.496 Sum_probs=53.8
Q ss_pred CCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccC-CCCce-----EEEc--cCccCccE
Q psy535 245 QPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP-PGSTQ-----ITIN--RLTPATTY 315 (460)
Q Consensus 245 ~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~i~--~l~~~~~~ 315 (460)
+|..|.++.+. .....++.-|.++..++.+ ..|.+.|+..+ ..|....... ..... +.+. ++.-...|
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~--~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGNLP--TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSSTST--CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCCCC--CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence 56777777754 4456899999998776654 34888888766 5565554322 12223 5555 67788999
Q ss_pred EEEEEEEcCCCC
Q psy535 316 EFQVVGKNELGD 327 (460)
Q Consensus 316 ~~~~~a~n~~G~ 327 (460)
.++|.|.|..|.
T Consensus 84 ~i~V~a~~~~~~ 95 (104)
T PF09067_consen 84 CIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEeccCCCc
Confidence 999999999874
No 426
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=89.03 E-value=1.8 Score=30.28 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=20.0
Q ss_pred ccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCC
Q psy535 163 QRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDG 194 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~ 194 (460)
....+..++|.|.+. .-.| ...+.|.+++.
T Consensus 12 e~~~~~~~tL~C~a~--gFyP~~I~v~W~kng~ 42 (96)
T cd07697 12 EIEKQGQGIYLCLLE--NFFPDVIQVHWREGNS 42 (96)
T ss_pred HHccCCCEEEEEEEE--EEeCCCeEEEEEECCE
Confidence 344567799999994 2234 34789999543
No 427
>PLN02533 probable purple acid phosphatase
Probab=88.13 E-value=6.5 Score=36.65 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419 (460)
Q Consensus 342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (460)
.|..|..+.+.-.. +++.|+|.-..... + .|+|-.... -.....+ ...+|. .. ..-.+
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~~-~----~V~yG~~~~~l~~~a~g----~~~~~~------~~-----~~~~~ 99 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQDSIP-P----SVVYGTVSGKYEGSANG----TSSSYH------YL-----LIYRS 99 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCCCCC-C----EEEEecCCCCCcceEEE----EEEEEe------cc-----ccccC
Confidence 36678888887655 68999999775422 2 255543221 0000000 001110 00 00112
Q ss_pred CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
.......|.+|+|++.|.+||- ....|+...|+|.
T Consensus 100 g~iH~v~l~~L~p~T~Y~Yrvg------~~~~s~~~~F~T~ 134 (427)
T PLN02533 100 GQINDVVIGPLKPNTVYYYKCG------GPSSTQEFSFRTP 134 (427)
T ss_pred CeEEEEEeCCCCCCCEEEEEEC------CCCCccceEEECC
Confidence 3345788999999999999983 2234666777773
No 428
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=87.53 E-value=1.6 Score=29.97 Aligned_cols=68 Identities=13% Similarity=0.306 Sum_probs=40.9
Q ss_pred EcceeeeecceeeEEEEEEEecC----CCCCeEEEeeCCeecCccccccEEEeecC--eEEEeecCCCCCeEEEEEE
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKAN----PTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~ 131 (460)
+.|....+..|.+++..|..... .....|.|..++..+.. .++....++ ++++.+.....+-.|-|..
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~---~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG---SQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC---GCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh---hHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 34555677889999999998533 13446999999986542 444444454 4566665555555566653
No 429
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=87.28 E-value=4.2 Score=28.43 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=18.6
Q ss_pred CCCeEEEEeeeeccCCC-C-CCeeEEEcCCC
Q psy535 166 VGESVDMHCEAQEAEGT-Q-KPTITWQRRDG 194 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~ 194 (460)
.++.++|.|.+ .+. | ...+.|.+++.
T Consensus 15 ~~~~~~L~C~a---~gFyP~~i~vtW~k~g~ 42 (95)
T cd04985 15 SSDSVTLGCLA---TGFLPEPVTFTWNSGSN 42 (95)
T ss_pred CCCcEEEEEEE---eeEECCCcEEEEeECCE
Confidence 46678999999 453 3 34789999554
No 430
>PHA03042 CD47-like protein; Provisional
Probab=87.25 E-value=2.2 Score=35.67 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=41.4
Q ss_pred CCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535 167 GESVDMHCEAQEA--EGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240 (460)
Q Consensus 167 g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~ 240 (460)
.+++.+.|.+.+- .....-.+.|..++...+..... ..++|.+.. ...-.|+|+|.+.+...+.....++.
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEec-cccCCCceeEEEeecccCccEEEEEE
Confidence 5788999998421 11134579999865544322221 223455443 33347999999987665555555443
No 431
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=86.89 E-value=1.9 Score=29.24 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=20.0
Q ss_pred CCCCeEEEEeeeeccCCCCCC-eeEEEcCCC
Q psy535 165 KVGESVDMHCEAQEAEGTQKP-TITWQRRDG 194 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~ 194 (460)
..+..++|.|.+. .-.|.. .+.|.+++.
T Consensus 6 ~~~~~~~L~C~v~--~f~P~~i~v~W~~~~~ 34 (83)
T PF07654_consen 6 ELGGSVTLTCLVS--GFYPKDITVTWLKNGK 34 (83)
T ss_dssp HSTSEEEEEEEEE--EEBSSTEEEEEEETTE
T ss_pred cCCCCEEEEEEEE--EEECCCcEEEEEeccc
Confidence 3488999999994 334433 799998544
No 432
>PHA03282 envelope glycoprotein E; Provisional
Probab=86.79 E-value=1.8 Score=39.20 Aligned_cols=45 Identities=33% Similarity=0.507 Sum_probs=33.7
Q ss_pred cceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEe
Q psy535 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVE 54 (460)
Q Consensus 9 ~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~ 54 (460)
++|+.+ .|++|.|.+++++|+|.|+..+....... ....++|.|.
T Consensus 116 ~~rvs~-~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 116 PPRVAV-VNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred CcceeE-ecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 678888 48899999999999999999986554433 2333556664
No 433
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=85.81 E-value=24 Score=30.99 Aligned_cols=193 Identities=16% Similarity=0.058 Sum_probs=96.8
Q ss_pred ceEEEEEEecccceeeeeeEEEEecCCCCCCCcee----eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeee
Q psy535 219 FGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294 (460)
Q Consensus 219 ~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (460)
...|...+.+..+..+.++.. |...+-..|.... .......+.|+|.-+... ..|.+.-.+.+.......
T Consensus 136 ~~~~~Iia~~f~~~~sfsf~g-VE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~-----~yy~IY~~~~g~e~~~~i 209 (343)
T COG3401 136 KYMELIIAADFQMGKSFSFTG-VEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE-----DYYRIYASDSGNEEYGFI 209 (343)
T ss_pred ceeeeEEeecccccceeeeee-eecccccCCceeeeeeeecCCCCcceeeccCcccc-----ceEEEeccCCccccccce
Confidence 445666666655544444322 2222222232222 233455778888732111 134443333322222211
Q ss_pred eccCCCCceEEEccCccCccEEEEEEEEc-CCCCCCCCCcEEEEccCCCCCCCcceEEEeecceEEEEecCCCCCCccce
Q psy535 295 PVTPPGSTQITINRLTPATTYEFQVVGKN-ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQ 373 (460)
Q Consensus 295 ~~~~~~~~~~~i~~l~~~~~~~~~~~a~n-~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~ 373 (460)
... ....+.-.-...+..+.|.+.+.. ..+++..+....+......|..|....-....+.+.|.|+...... ..
T Consensus 210 a~t--~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~~~s~i~V~~E~~~~~~--av 285 (343)
T COG3401 210 AQT--TENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGETTEASFIGVAAEQNQLRQ--AV 285 (343)
T ss_pred eec--cccchhhhhhccCceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCceeeeeeeeEEecccccce--ee
Confidence 111 223333333444667777777764 5556766766666555554554444444444456778888753311 22
Q ss_pred EEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCC
Q psy535 374 YYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM 450 (460)
Q Consensus 374 ~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~ 450 (460)
.|.++-..++..... .......+....+.++..|.+.|.+++..|.+.
T Consensus 286 ~ytvyr~~~g~~~~~-----------------------------f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 286 TYTVYRVEDGTPTKF-----------------------------FTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred EEeeeeccCCCccee-----------------------------eeeeeccccchhhccccceeEEEEEeccccccc
Confidence 333322222211100 012345566778889999999999999999753
No 434
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=85.79 E-value=1.8 Score=30.98 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=45.7
Q ss_pred eeeeeecceEEEEeecCCC----CCCC-------ceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEE
Q psy535 252 ITGVATEFSVTLEWLPGYS----GGPD-------LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 320 (460)
Q Consensus 252 ~~~~~~~~~~~l~w~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 320 (460)
+........+.+.+.++.. ++.. ....|.+.+++.+....... .......+.|.+|.++..|-+++.
T Consensus 8 v~v~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~--~~~~~~~~~l~~L~p~t~YCv~V~ 85 (106)
T PF09294_consen 8 VNVSSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKE--IETKNSSVTLSDLKPGTNYCVSVQ 85 (106)
T ss_dssp EEEEEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEE--EESSSEEEEEES--TTSEEEEEEE
T ss_pred EEEEECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEE--EeecCCEEEEeCCCCCCCEEEEEE
Confidence 4455666777777775531 0000 01357777777665411111 222456679999999999999999
Q ss_pred EEcCC--CCCCCCCcEEEE
Q psy535 321 GKNEL--GDGMLSNIVVVK 337 (460)
Q Consensus 321 a~n~~--G~~~~s~~~~~~ 337 (460)
|.... -.|.+|....+.
T Consensus 86 ~~~~~~~~~s~~S~~~C~~ 104 (106)
T PF09294_consen 86 AFSPSQNKNSQPSEPQCIT 104 (106)
T ss_dssp EEECSSTEEEEEBSEEEEE
T ss_pred EEeccCCCcCCCCCCEeEe
Confidence 83322 134445444443
No 435
>KOG4228|consensus
Probab=85.23 E-value=7.5 Score=39.77 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=31.7
Q ss_pred EEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecC
Q psy535 221 YYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPG 268 (460)
Q Consensus 221 ~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~ 268 (460)
.|.|.+....+.......+.|...||.++..........++.+.|...
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~ 48 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLG 48 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhcc
Confidence 388999988888888888888776665554433333444566666543
No 436
>COG5475 Uncharacterized small protein [Function unknown]
Probab=82.64 E-value=4.5 Score=24.27 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=25.9
Q ss_pred ccceEEEeeCC-eEEEeecCCCCCeeEEEEEEeCCCC
Q psy535 8 LETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGE 43 (460)
Q Consensus 8 ~~~r~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~~~ 43 (460)
.++-.++.+.| .++|+..+.+ |.|.|...+..|.
T Consensus 7 tgdvV~lKsGGP~Mtvs~~ss~--Gmy~C~Wf~g~g~ 41 (60)
T COG5475 7 TGDVVTLKSGGPRMTVSGYSSD--GMYECRWFDGYGV 41 (60)
T ss_pred cCcEEEeecCCceEEEeccccC--CeEEEEEecCCCc
Confidence 34556776666 7888877754 9999999998874
No 437
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=82.10 E-value=9.8 Score=25.55 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.5
Q ss_pred eEEEeecCCCCCeeEEEEEE
Q psy535 19 TLVINPVGSDDSGLYMCEVS 38 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~ 38 (460)
.+.....+.+|+|.+.|.|.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEc
Confidence 56777888999999999995
No 438
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=82.07 E-value=1.8 Score=40.68 Aligned_cols=263 Identities=14% Similarity=0.184 Sum_probs=19.4
Q ss_pred CeEEEeecCCCC-CeeEEEEEE--eCCCCcceeeeEEEEecCCe-eEEcc-eeeeecceeeEEEEEEEecCCC------C
Q psy535 18 GTLVINPVGSDD-SGLYMCEVS--NGIGEPQAAQAYLNVEFPAK-VTFTP-TVQYLPFRLQGVVQCHIKANPT------F 86 (460)
Q Consensus 18 ~~L~i~~~~~~d-~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p~-~~~~~-~~~~~~~g~~~~l~C~~~~~~~------~ 86 (460)
..|.|.+..+.- .-.|...+. +..+......+.|.|...|. ..+.- ....+..++.+.|.....-.|. .
T Consensus 38 ~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~ 117 (440)
T PF02010_consen 38 PQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSG 117 (440)
T ss_dssp SECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------
T ss_pred eEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCCc
Confidence 378888877632 234566666 22232335556666654332 22221 2233333456777764432221 2
Q ss_pred CeEEEeeCCeecC-----ccccccEEEeecCeEEEeecCCCCCeEEE--EEEEcCCC-CcceeeEEEEEeeCCCceeeCC
Q psy535 87 QYVTWTKDKRLLE-----PYQTKDIVVMQNGSLLFTRVNQNHQGRYT--CTPYNAHG-TQGSSGQMEVLVRKPPAFTIKP 158 (460)
Q Consensus 87 ~~v~W~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~--C~~~~~~g-~~~~~~~~~v~v~~~p~~~~~~ 158 (460)
..+.|.-....-. ..............|.|......-...|. ..+....+ .......+.+.-..+|.+.+..
T Consensus 118 l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~ 197 (440)
T PF02010_consen 118 LTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISC 197 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEcc
Confidence 3577876332211 00001111123345666443332222254 44444333 2223333333333455554443
Q ss_pred Ccc--cccCCCCeEEEEeeeeccC-CCCCCeeEEEc-----CC--CccCC---cc-cEEEecceEEEcc--ccceeceEE
Q psy535 159 EAM--YQRKVGESVDMHCEAQEAE-GTQKPTITWQR-----RD--GVALP---KN-RVKIVGGNITIEG--LRRVDFGYY 222 (460)
Q Consensus 159 ~~~--~~~~~g~~~~l~C~~~~~~-~~p~~~~~W~~-----~~--~~~~~---~~-~~~~~~~~l~i~~--~~~~~~g~y 222 (460)
... ..+..++.+.|...+.... ......+.|.. .. ...+. .. ........|.|.. +.....+.+
T Consensus 198 ~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~ 277 (440)
T PF02010_consen 198 VSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTF 277 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeecccccccccccccccccccccccccccccccccccccccccc
Confidence 221 1266677777665553111 03345778876 00 00000 00 0011122455553 344445566
Q ss_pred EEEEeccccee-eeeeEEEEecCCCCC-CCcee---eeeecceEEEEeecCCCCCCCceeeEEEEE
Q psy535 223 ECVVSNEVATI-VQAAQLVVEGTQPHA-PYNIT---GVATEFSVTLEWLPGYSGGPDLKQNYVIWY 283 (460)
Q Consensus 223 ~C~a~n~~g~~-~~~~~l~v~~~~p~~-p~~~~---~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~ 283 (460)
++.+.+..+.. .++..+.+.. +|.. ...+. +......++++|.-..+... | ..|.+.+
T Consensus 278 ~l~v~~~~~~~~~a~~~~~~n~-pP~~g~c~v~P~~G~al~T~Ft~~c~~~~d~~~-p-L~Y~f~~ 340 (440)
T PF02010_consen 278 RLTVTDSSGSSGSASISFTVNA-PPSGGSCSVSPSSGYALETTFTITCSGWTDDDQ-P-LTYQFYY 340 (440)
T ss_dssp ------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-c-ccccccc
Confidence 66777665543 4555555543 2321 11111 22334566777763333333 3 4666666
No 439
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=81.95 E-value=1.1 Score=41.40 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=0.0
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF 55 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 55 (460)
|.|.|.+++++|+|.|+-...+..+......+.|.|..
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp --------------------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 57999999999999999999987776656667777764
No 440
>PHA03271 envelope glycoprotein C; Provisional
Probab=81.91 E-value=40 Score=30.59 Aligned_cols=77 Identities=10% Similarity=0.200 Sum_probs=53.8
Q ss_pred eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe-eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEE
Q psy535 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITW 189 (460)
Q Consensus 113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v-~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W 189 (460)
.|.|.++...|+|.|+-...+..........+.+.+ +.||.+.+.+.. +..|+.....|.+. .-.|+ ..++|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P---VL~Ge~YkAtC~vA--nYYPP~SvrlrW 282 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP---VLSGENYKASCIVR--HFYPPGSVYVSW 282 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc---cccCCCceEEEEee--eecCCCceEEEE
Confidence 499999999999977666665544443444444444 467778777764 57899999999994 23333 38999
Q ss_pred EcCCC
Q psy535 190 QRRDG 194 (460)
Q Consensus 190 ~~~~~ 194 (460)
+.++.
T Consensus 283 f~nG~ 287 (490)
T PHA03271 283 RQNGN 287 (490)
T ss_pred EeCCc
Confidence 99544
No 441
>KOG4597|consensus
Probab=81.08 E-value=3.8 Score=37.27 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=56.4
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcC--CCccC-Ccc------cEEEecceEEEccccceeceEEEEEEeccccee
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRR--DGVAL-PKN------RVKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~--~~~~~-~~~------~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.+..++...++|-+ .|.+.+.+.|.+. +...+ ... -.......|.|-+-...++|.|+|.+.+..|-.
T Consensus 207 ~vg~wetcS~tCg~---~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 207 FVGDWETCSSTCGV---QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred hcccchhhcccccc---cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 46678899999998 7999999999863 11111 001 111234468899999999999999999999988
Q ss_pred eeeeEEEEe
Q psy535 234 VQAAQLVVE 242 (460)
Q Consensus 234 ~~~~~l~v~ 242 (460)
...+.+.+.
T Consensus 284 ~rdv~c~s~ 292 (560)
T KOG4597|consen 284 RRDVPCSSV 292 (560)
T ss_pred eccceeeee
Confidence 887776654
No 442
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=80.71 E-value=73 Score=32.79 Aligned_cols=95 Identities=14% Similarity=0.252 Sum_probs=55.4
Q ss_pred CCCCCcceEEEeecceEEEEecCCCC--CCccceEEEEEEEEcC-----CeeeeccccCCCCcccccccceecCceeeee
Q psy535 342 KPGPPRNVSVTEVNNGFVISWQPPLE--RASLIQYYLIKYRTDG-----SWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414 (460)
Q Consensus 342 ~P~~p~~~~~~~~~~~v~l~W~~~~~--~~~~i~~y~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (460)
+|....+|++......|.|+|+.|.+ ..+...+|.|+|...- .+..... + .++- .
T Consensus 755 PP~rItDL~~~~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~--v---n~~~-------------~ 816 (863)
T TIGR00868 755 PPSKITDLEAGFQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQ--V---NTTD-------------L 816 (863)
T ss_pred CCccceeeEEeecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccc--c---ccCC-------------c
Confidence 34555556665445679999999976 3677899999997531 1111110 0 0000 0
Q ss_pred eccCCCCcceEEEC--C--CCcCceEEEEEEEeecCCC-CCCCce
Q psy535 415 IPVTPPGSTQITIN--R--LTPATTYEFQVVGKNELGD-GMLSNI 454 (460)
Q Consensus 415 ~~~~~~~~~~~~i~--~--L~p~~~Y~~~v~a~n~~G~-s~~s~~ 454 (460)
++........|++. + ...++.|.|-|+|++..|- |+.|+.
T Consensus 817 ~P~~ags~e~~~f~~~~~~~~~~~~~~~ai~a~d~~~~~s~~sn~ 861 (863)
T TIGR00868 817 IPKEANSKEVFVFKPEGIPIENGTDLFIAVQAIDKANLTSEVSNI 861 (863)
T ss_pred CCCCCCceeEEEEeCCcccccCCeEEEEEEEEEcccccccccccc
Confidence 12222333333333 3 2357899999999999974 766653
No 443
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=80.59 E-value=11 Score=26.01 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=34.5
Q ss_pred EEEEEEEecCCCCCeEEEeeC--Cee-cC--ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 74 GVVQCHIKANPTFQYVTWTKD--KRL-LE--PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~--~~~-~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
+.-.|.+.+..+++.|+|.-+ |.. .. ...+....+ .+.+.+......|.-..+|.+...
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV--~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV--ISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEE--EEEEEEeECHHHcCCEeEEEEEec
Confidence 456899655545568999862 321 00 001111111 123666677888899999999764
No 444
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=80.52 E-value=17 Score=25.54 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=49.0
Q ss_pred CcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc--
Q psy535 346 PRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS-- 422 (460)
Q Consensus 346 p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 422 (460)
|.++...... +.+..+|.+... ..+-+.|.|+|+.......... ..........
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~-~~~~t~y~L~~~~~~~~~~~eC----------------------~~y~~~~~~~~g 58 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKE-APPDTQYTLYYWYSPLEEEKEC----------------------PHYSKDSGTRIG 58 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTT-CSTTEEEEEEEEETTSSSEEEE----------------------SEEEESTSSEEE
T ss_pred CeeCEEEEECCEEEEEEECCCCC-CCCcccEEEEEEcCCCCccccC----------------------CCccccCCceeE
Confidence 5677776665 689999998754 3355789999998652111111 0000011112
Q ss_pred ceEEECCC--CcCceEEEEEEEeecCCCCCCC
Q psy535 423 TQITINRL--TPATTYEFQVVGKNELGDGMLS 452 (460)
Q Consensus 423 ~~~~i~~L--~p~~~Y~~~v~a~n~~G~s~~s 452 (460)
..+..... .....|.|.|.+.|..|.-.+.
T Consensus 59 C~~~~~~~~~~~~~~~~v~V~~ss~~~~i~~~ 90 (99)
T PF09240_consen 59 CQFPVSEIDSSEFSQYNVCVNGSSSAGSIRSS 90 (99)
T ss_dssp EEEESCTT-TTTTSEEEEEEEEEETTEEEECE
T ss_pred EEecCCCccccccceEEEEEEeccCCCccCCc
Confidence 23444444 2345899999999998865444
No 445
>PHA03052 Hypothetical protein; Provisional
Probab=75.22 E-value=16 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.389 Sum_probs=23.0
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCC
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~ 193 (460)
.+..|.+++|.|.+..-.+...+.+.|..++
T Consensus 8 ~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~ 38 (69)
T PHA03052 8 VTSLGSNLTITCKVSLRPPTTDADVFWISNG 38 (69)
T ss_pred EEEccCCceEeEEEEecCCCcceEEEEEeCC
Confidence 6788999999999974344445678887743
No 446
>KOG3632|consensus
Probab=68.86 E-value=3.5 Score=41.24 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=59.8
Q ss_pred ccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccc
Q psy535 313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKG 391 (460)
Q Consensus 313 ~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~ 391 (460)
..|...+.+....|.+.....+-. +....|..|.++++.... .+..++|-+-..+.. .+.|...+.
T Consensus 643 ~s~~isvq~ltSrGsqd~lrc~Ll-vgg~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~-----Hviyln~eE------- 709 (1335)
T KOG3632|consen 643 HSGYISVQRLTSRGSQDQLRCILL-VGGAAPVVPSQLRVWNATQTSAMITWVPFNSNFL-----HVIYLNAEE------- 709 (1335)
T ss_pred CceeeehhhhhccCCCCcceeeEe-ccccccccchhhhhhhhhchhhheeeeecCCCcc-----eeeecCCcc-------
Confidence 445555556666775544333322 234457899999998887 589999987654221 122222211
Q ss_pred cCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeec
Q psy535 392 QIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 445 (460)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~ 445 (460)
..........|++.+|.|++.|.++|-|.-.
T Consensus 710 -----------------------~~ps~a~~y~ytf~~lrpgt~y~a~vea~~p 740 (1335)
T KOG3632|consen 710 -----------------------PRPSVAEMYNYTFMRLRPGTDYWASVEAALP 740 (1335)
T ss_pred -----------------------CCCchhhhhHHHHhccCCCCccceecccccC
Confidence 0111234456788999999999999988765
No 447
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=68.75 E-value=36 Score=23.56 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=49.3
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
+.+.|....++.|.++.++|...- +.+..+-|.-.= .+..... -..+.|.++.. | ..-.|.+.- .
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~L--------~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C-~ 73 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETSL--------SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNC-S 73 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESS-SS-SEEEEESSS--------EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEE-T
T ss_pred EEEECCccEECCCCCEEEEEcCCC-CCCCcceEEEec--------CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEc-C
Confidence 456788888999999999999854 333345554311 1111111 12477888885 4 567798864 3
Q ss_pred CCcceeeEEEEEeeCCCc
Q psy535 136 GTQGSSGQMEVLVRKPPA 153 (460)
Q Consensus 136 g~~~~~~~~~v~v~~~p~ 153 (460)
|. +..+.+.|.|+.+|.
T Consensus 74 g~-Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 74 GE-QSSASANITVYKPPE 90 (91)
T ss_dssp TE-EEEEEEEEEEEB--S
T ss_pred Ce-EEEeEEeeEEeCCCC
Confidence 33 467788888887774
No 448
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=68.16 E-value=17 Score=28.17 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=29.7
Q ss_pred ccceEEEeeC-C-eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEE
Q psy535 8 LETRVVIKKD-G-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLN 52 (460)
Q Consensus 8 ~~~r~~~~~~-~-~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 52 (460)
.-.|.+...+ + .|.|.+.+.+|+|.|.-++.-..... ...+.+.
T Consensus 112 ~~~r~~~~~~~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~-~d~F~~~ 157 (161)
T PF01688_consen 112 AYPRLNTSPENGVLLRIRNPRPEDSGIYYLRVWLDGANK-ADVFRLS 157 (161)
T ss_pred CccccccCCCcceEEEeCCCCcccceEEEEEEEECCCCC-CcEEEEe
Confidence 3344444444 3 69999999999999999999764332 3334443
No 449
>PHA03281 envelope glycoprotein E; Provisional
Probab=66.80 E-value=68 Score=30.33 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF 55 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 55 (460)
.+.|.|.+++..++|.|+-..+...|......+.|+|..
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 358999999999999999988866665545567777764
No 450
>PHA03282 envelope glycoprotein E; Provisional
Probab=66.21 E-value=20 Score=32.94 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=29.6
Q ss_pred eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 109 MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 109 ~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
..+++|.|.+++.+|+|.|+..+............+.+.|.
T Consensus 121 ~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 121 VVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred EecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 34778999999999999999997654444434445555554
No 451
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=66.17 E-value=1.4e+02 Score=29.57 Aligned_cols=274 Identities=14% Similarity=0.150 Sum_probs=136.2
Q ss_pred cCCCCCeeEEEEEEeCCCCc-----ceeeeEEEEecC---C-eeE--EcceeeeecceeeEEEEEEEecCCCCCe-EEEe
Q psy535 25 VGSDDSGLYMCEVSNGIGEP-----QAAQAYLNVEFP---A-KVT--FTPTVQYLPFRLQGVVQCHIKANPTFQY-VTWT 92 (460)
Q Consensus 25 ~~~~d~G~Y~C~~~~~~~~~-----~~~~~~l~v~~~---p-~~~--~~~~~~~~~~g~~~~l~C~~~~~~~~~~-v~W~ 92 (460)
-.+..+|.|.-.+.-..... ....+...|... | .+. +.+....+..|+++.+.|.+.+.....- +.-.
T Consensus 344 w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik 423 (667)
T PRK14081 344 WKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIK 423 (667)
T ss_pred EeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEE
Confidence 34567899987766332111 123345555432 3 221 2333456777999999999988754321 2223
Q ss_pred eCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE--cCCCCc--ceeeEEEEEeeC-CCc-ee--eCCCccccc
Q psy535 93 KDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY--NAHGTQ--GSSGQMEVLVRK-PPA-FT--IKPEAMYQR 164 (460)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~--~~~g~~--~~~~~~~v~v~~-~p~-~~--~~~~~~~~~ 164 (460)
++|..+.. ..-..+..+.+. +.-+|.|+-.+. +..... .....+.+.|.. .|. +. +.+... ..
T Consensus 424 ~ng~~ve~-----~~Y~~~~~~~f~---P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~-~~ 494 (667)
T PRK14081 424 KDGKEEEK-----IDYGKNNWVNFI---PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKE-YY 494 (667)
T ss_pred ECCEEEEE-----eecccccEEEEE---ECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccc-cE
Confidence 46666542 111122334443 477999998654 433222 134456666664 443 22 223333 35
Q ss_pred CCCCeEEEEeeeeccCCCCCCeeEEE-cCCCccCCcccEEEecceEEEccccceeceEEEEEEe--cccc----eeeeee
Q psy535 165 KVGESVDMHCEAQEAEGTQKPTITWQ-RRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVS--NEVA----TIVQAA 237 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~~~~p~~~~~W~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~--n~~g----~~~~~~ 237 (460)
..|+.+++.|... +.....+... ..++......... ....+.+. +..+|.|+..+. |... .....+
T Consensus 495 ~vg~~i~~~~~~~---~~k~v~y~y~~~~NG~~v~~t~Ys-~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v 567 (667)
T PRK14081 495 LVGDDIEIEVIIQ---NTKDVLIKYILKINGHKVEETDYI-KNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEV 567 (667)
T ss_pred EeCCEEEEEEEEe---CCCeEEEEEEEEECCEEEEEeecc-ccceEEEe---ecCCceEEEEEEEcccccccccccceEE
Confidence 7899999999984 3223333322 2234332111111 12234333 445788887654 3332 223445
Q ss_pred EEEEecCCCCCCCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccE
Q psy535 238 QLVVEGTQPHAPYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 315 (460)
Q Consensus 238 ~l~v~~~~p~~p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 315 (460)
.+.|..+.|.....+..... ...-.++|.....++... -|..+..+ .+.|..+.... ...-++ +.|...|
T Consensus 568 ~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~~v--~Yef~v~~--~g~w~~vq~ys-~k~~ys---f~p~~~g 639 (667)
T PRK14081 568 KFYVREALPITNTKIKTSKKKFKCNEEVTFSVKSEGGKDV--CYEFYIME--KGEWKLVQKYS-RKNYYS---FMPFNKG 639 (667)
T ss_pred EEEEcCCCCceeeEEEeecceEEcCCeEEEEEEccCCCcE--EEEEEEEE--CCcEEEEeecc-ccCceE---EEeccCC
Confidence 56666543333222222111 113344555444555543 45555554 45777765332 333343 3467777
Q ss_pred EEEEEEE
Q psy535 316 EFQVVGK 322 (460)
Q Consensus 316 ~~~~~a~ 322 (460)
.|.+.|.
T Consensus 640 ~Y~ilvl 646 (667)
T PRK14081 640 KYKVLVL 646 (667)
T ss_pred cEEEEEE
Confidence 7777663
No 452
>PHA03283 envelope glycoprotein E; Provisional
Probab=64.43 E-value=80 Score=29.80 Aligned_cols=37 Identities=24% Similarity=0.171 Sum_probs=28.9
Q ss_pred CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK 150 (460)
Q Consensus 112 ~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~ 150 (460)
+.|+|.++..+++|.|+-..++..+ .....+.|.|..
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~--~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGM--MKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCc--eEEEEEEEEecC
Confidence 4699999999999999999887655 344555566665
No 453
>PHA03052 Hypothetical protein; Provisional
Probab=63.53 E-value=32 Score=22.01 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=26.8
Q ss_pred ceeeeecceeeEEEEEEEecCCC--CCeEEEeeCCeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT--FQYVTWTKDKRLL 98 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~ 98 (460)
|....+..|..+++.|.+.=.++ .+.|.|.-|+..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 45566778999999999843322 3459999999887
No 454
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=62.92 E-value=46 Score=22.77 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=33.7
Q ss_pred EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
..|.+.+.+. .. .+.||-||..+..... ...+. ......|.|+-.+.+..|..
T Consensus 32 ~~l~l~a~~~-~~-~~~W~vdg~~~g~~~~-------~~~~~---~~~~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 32 QPLVLKAAGG-RG-PVYWFVDGEPLGTTQP-------GHQLF---WQPDRPGEHTLTVVDAQGRS 84 (89)
T ss_pred ceEEEEEeCC-CC-cEEEEECCEEcccCCC-------CCeEE---eCCCCCeeEEEEEEcCCCCE
Confidence 4455555554 33 5999999999842111 11232 33457899999998888765
No 455
>KOG0200|consensus
Probab=62.82 E-value=37 Score=33.61 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=58.5
Q ss_pred eCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe---e-EEcceeeeecceeeEEEEEEEecCCCCCeEEE
Q psy535 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK---V-TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTW 91 (460)
Q Consensus 16 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W 91 (460)
.++.+.+..+...|.|.|+|.+.+ . ...+.+. ..... + ...+.......+....+ +...+ ...+.|
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~--~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~ 80 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN--I---NLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIP-QPFIKW 80 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec--C---ceeeEee-cccCcccccccCCCCCcceeeccccee---eeecC-CCccee
Confidence 456899999999999999999999 1 2222222 11111 1 11233333334444455 22223 335777
Q ss_pred eeCCeecC---ccc-------------cccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535 92 TKDKRLLE---PYQ-------------TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 92 ~~~~~~~~---~~~-------------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.+...... ... ..+........+.+.++...+.+.|.|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 81 GTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 76432110 000 0000001122478889999999999998765
No 456
>PHA03112 IL-18 binding protein; Provisional
Probab=61.71 E-value=35 Score=25.74 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=21.0
Q ss_pred cceeeEEEEEEEecC-CCCCeEEEeeCC
Q psy535 69 PFRLQGVVQCHIKAN-PTFQYVTWTKDK 95 (460)
Q Consensus 69 ~~g~~~~l~C~~~~~-~~~~~v~W~~~~ 95 (460)
.+++++.|+|.+-+. |....+-|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 348899999999765 555679999765
No 457
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=60.65 E-value=40 Score=23.46 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=34.0
Q ss_pred eEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec------ceEEEccccceeceEEEEEEecc
Q psy535 169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG------GNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 169 ~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~------~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+...|... .|.|+..+.|..+=+...........+ +.+.+......+.-..+|.+...
T Consensus 22 v~VA~CiSa--~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 22 MLVATCVSA--NGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEEcC--CCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 455789863 899999999985211111111111111 23555556666667888988765
No 458
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=58.70 E-value=27 Score=34.89 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=29.7
Q ss_pred eeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCC-CCCC
Q psy535 411 DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLS 452 (460)
Q Consensus 411 ~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~-s~~s 452 (460)
+|..... .....|.+.+|.+ ..|.++|+|.|.+|. |++.
T Consensus 650 ~~vta~r--t~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a 689 (952)
T COG4733 650 NWITAPR--TSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDA 689 (952)
T ss_pred ceEeccc--ccccceeecCcCc-cceEEEEEEeeccCCCCCCc
Confidence 4555443 3567888999999 499999999999997 4443
No 459
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=57.98 E-value=46 Score=21.11 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=27.9
Q ss_pred EEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
+|.|.....- | +.||-||..+-. ....+|.+.++ .++|+|.-.
T Consensus 2 tltC~s~~sL-P--iswYcN~TRLlR--------lt~~Tlt~~~l----tcNFtCV~q 44 (71)
T PF11049_consen 2 TLTCPSNASL-P--ISWYCNGTRLLR--------LTQQTLTVVTL----TCNFTCVGQ 44 (71)
T ss_pred ceecCCCCCC-c--ccEEECCceeee--------ecCCeEeeeee----eEEeeecCC
Confidence 5788876642 2 899999987642 22335655443 578999754
No 460
>KOG1026|consensus
Probab=54.46 E-value=31 Score=34.46 Aligned_cols=157 Identities=11% Similarity=0.019 Sum_probs=81.1
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
.+..+..+++.|...+.+.+ ...|+..+.............. +-...+.+ +.|.+.|..+....+..+.+
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp-~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~ 272 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVP-CHYWFPNCLASSNTNQTSSLCR-SECEVLEN--------DLCIAENAVARSNPSILLVV 272 (774)
T ss_pred hhcccchheeeeecccCCCc-ceeeecccccccCCCccccccc-ccceeeec--------hhhHHHHhhhhcCceeeeEE
Confidence 35567788999999998776 6899987766543211111111 11111222 88999988887655544433
Q ss_pred EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc--cEEEec--ceEEEccccceeceEE
Q psy535 147 LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIVG--GNITIEGLRRVDFGYY 222 (460)
Q Consensus 147 ~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~--~~l~i~~~~~~~~g~y 222 (460)
. .|+........ ... .-.|......+.+.+...|-.++......+ ...... ..+........+.|.|
T Consensus 273 ~--~p~~~~~~~~~---~~~----~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~ 343 (774)
T KOG1026|consen 273 D--LPKAEVLLCSP---LSD----HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNY 343 (774)
T ss_pred e--cccccccCCCC---ccc----cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcc
Confidence 3 33222111111 001 223443322456666777776433211110 001111 2233333355677999
Q ss_pred EEEEecccceeeeeeEEEEe
Q psy535 223 ECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 223 ~C~a~n~~g~~~~~~~l~v~ 242 (460)
.|.+.+..|.........+.
T Consensus 344 ~~~~e~~~g~~~~r~~g~~~ 363 (774)
T KOG1026|consen 344 TLFPELPGGKNYCRNPGGFM 363 (774)
T ss_pred eeeecccCccccccCcCccc
Confidence 99999887776554444443
No 461
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=53.76 E-value=75 Score=22.29 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=38.5
Q ss_pred cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeec---cCCCCceEEEccCccC----ccEEEEEEEEcCCCCC
Q psy535 258 EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGSTQITINRLTPA----TTYEFQVVGKNELGDG 328 (460)
Q Consensus 258 ~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~----~~~~~~~~a~n~~G~~ 328 (460)
...+..+|.+.....+. ..|.+.++.........-.. .......+.+...... ..+.+.+.+.+..|.-
T Consensus 12 ~~~m~CtW~~g~~~~~~--t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~ss~~~~i 87 (99)
T PF09240_consen 12 LEYMNCTWEPGKEAPPD--TQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNGSSSAGSI 87 (99)
T ss_dssp TTEEEEEEECCTTCSTT--EEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEEEETTEEE
T ss_pred CEEEEEEECCCCCCCCc--ccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEeccCCCcc
Confidence 56899999976544333 57777777755332222211 1112334555555442 3577777777777643
No 462
>PHA03281 envelope glycoprotein E; Provisional
Probab=51.25 E-value=2.2e+02 Score=27.26 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=27.7
Q ss_pred ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK 150 (460)
Q Consensus 110 ~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~ 150 (460)
..+.|.|.++...++|.|+-..+...|... ...+-|.|..
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~-~svfLVtVkg 335 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENM-YATFLVKLKG 335 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcce-eEEEEEEecC
Confidence 345799999999999999988875555432 2234455543
No 463
>PHA03189 UL14 tegument protein; Provisional
Probab=50.62 E-value=1.1e+02 Score=26.65 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=15.4
Q ss_pred ceeeeecceeeEEEEEEEec
Q psy535 63 PTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~ 82 (460)
|....++.|+.+++.|.+-.
T Consensus 59 pAP~l~pyGdrvtVpC~fp~ 78 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPT 78 (348)
T ss_pred CCccccCCCceeeeeeeecC
Confidence 45566788999999998743
No 464
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=50.42 E-value=12 Score=24.36 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=13.1
Q ss_pred CCCcCceEEEEEEEe
Q psy535 429 RLTPATTYEFQVVGK 443 (460)
Q Consensus 429 ~L~p~~~Y~~~v~a~ 443 (460)
.|.||..|.|.|+|.
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 489999999999874
No 465
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=48.91 E-value=88 Score=21.69 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=43.2
Q ss_pred CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecc---eEEEccccceeceEEEEEEeccccee
Q psy535 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG---NITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.|... .+..|+.+.+.|.. +-..+..+-|... +...... .+. .+.+.++.. .....|.+.-.....
T Consensus 9 ~P~~~-vV~~G~Sv~VNCSt---sC~~p~~~GLET~----L~k~~~~-~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~ 77 (91)
T PF03921_consen 9 SPEEP-VVPPGGSVWVNCST---SCPQPEKIGLETS----LSKTELD-SGPQWKAFQLSNVTE--DSSPLCFFNCSGEQS 77 (91)
T ss_dssp ESSEE-EEETTEEEEEEEEE---SSSS-SEEEEESS----SEEEEEE-EETTEEEEEEEEE-S--CEEEEEEEEETTEEE
T ss_pred ECCcc-EECCCCCEEEEEcC---CCCCCCcceEEEe----cCCcccC-CCCcEEEEEEEcccc--CCeEEEEEEcCCeEE
Confidence 34444 67899999999996 2222234455431 1111111 111 466777775 356779988764456
Q ss_pred eeeeEEEEec
Q psy535 234 VQAAQLVVEG 243 (460)
Q Consensus 234 ~~~~~l~v~~ 243 (460)
..+..|+|..
T Consensus 78 ~~~~~ItVY~ 87 (91)
T PF03921_consen 78 SASANITVYK 87 (91)
T ss_dssp EEEEEEEEEB
T ss_pred EeEEeeEEeC
Confidence 6777777765
No 466
>PHA03290 envelope glycoprotein I; Provisional
Probab=48.14 E-value=44 Score=29.26 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=25.7
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 54 (460)
.|.|.+.+.+|+|.|.-++.-..... +.-+.|.+.
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ldga~~-sDvF~lsv~ 164 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLDHSRL-FDGFFLGLN 164 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCcc-cceEEEEEE
Confidence 89999999999999999998654331 334444443
No 467
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=46.52 E-value=96 Score=21.45 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=24.1
Q ss_pred cccceEEEeeCCeEEEe-ecCCCCC-eeEEEEEEeCCCCc
Q psy535 7 SLETRVVIKKDGTLVIN-PVGSDDS-GLYMCEVSNGIGEP 44 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~-~~~~~d~-G~Y~C~~~~~~~~~ 44 (460)
..+++|++..||++... ++.+.+. -.++-.|.+..+..
T Consensus 43 ssDpdF~V~~DGsVy~~r~v~l~~~~~~F~V~a~D~~~~~ 82 (90)
T PF08758_consen 43 SSDPDFRVLEDGSVYAKRPVQLSSEQRSFTVHAWDSQTQE 82 (90)
T ss_dssp ---SEEEEETTTEEEEES--S-SSS-EEEEEEEEETTTTE
T ss_pred cCCCCEEEcCCCeEEEeeeEecCCCceEEEEEEECCCCCe
Confidence 66779999999988766 4555443 36888888877653
No 468
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=46.02 E-value=58 Score=28.99 Aligned_cols=21 Identities=10% Similarity=0.415 Sum_probs=15.6
Q ss_pred eEEEEeeeeccCCC-CC-CeeEEEcC
Q psy535 169 SVDMHCEAQEAEGT-QK-PTITWQRR 192 (460)
Q Consensus 169 ~~~l~C~~~~~~~~-p~-~~~~W~~~ 192 (460)
.++|.|.+ .|. |. ..+.|.++
T Consensus 216 ~~tL~C~A---~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTF---DSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEE---EeEeCCccEEEEEec
Confidence 67999999 454 33 37899995
No 469
>PHA03240 envelope glycoprotein M; Provisional
Probab=45.75 E-value=48 Score=26.86 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=15.9
Q ss_pred ecCeEEEeecCCCCCeEEE
Q psy535 110 QNGSLLFTRVNQNHQGRYT 128 (460)
Q Consensus 110 ~~~~l~i~~~~~~d~G~y~ 128 (460)
.+++|.|.++..+|.|+|.
T Consensus 103 ~NstL~i~~vn~sd~~nYc 121 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYC 121 (258)
T ss_pred ccceEEEEEEeecCcchhh
Confidence 3467999999999999994
No 470
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=45.68 E-value=61 Score=25.29 Aligned_cols=25 Identities=12% Similarity=0.103 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 113 SLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 113 ~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
.|.|.+.+.+|+|.|.-+++-....
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~ 149 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGAN 149 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCC
Confidence 4999999999999999998754433
No 471
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=45.24 E-value=34 Score=32.35 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=18.5
Q ss_pred CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
....+.+.+|+|++.|.+++.+.+. +..|..-.++|
T Consensus 62 ~t~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT 97 (453)
T PF09423_consen 62 FTVKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRT 97 (453)
T ss_dssp TEEEEEE-S--TT-EEEEEEEE--T---TEE---EEEE-
T ss_pred eEeecccCCCCCCceEEEEEEEecC---CCCCCceEEEc
Confidence 3456789999999999999999322 23334445555
No 472
>PHA03286 envelope glycoprotein E; Provisional
Probab=44.59 E-value=2.6e+02 Score=26.11 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=27.2
Q ss_pred CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 112 ~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
+.|.|.++...++|.|+-...|..+... ...+-|.|
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~-~~vflVtV 162 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAV-MDVLVVWV 162 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEE-EEEEEEEE
Confidence 4599999999999999999987766553 33444555
No 473
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=44.18 E-value=85 Score=20.14 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=33.9
Q ss_pred CeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 87 QYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 87 ~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
....|++++..+.. -.+.+. .+ +..-..+.+...|.+++.+.+..|..-....+.|
T Consensus 7 v~H~W~~~g~~~~~---i~l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVAR---IPLPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEE---EEEecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 35789999987642 111111 11 2333345557899999999988887655544443
No 474
>PLN02533 probable purple acid phosphatase
Probab=43.72 E-value=2.4e+02 Score=26.59 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=23.6
Q ss_pred ceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEcc
Q psy535 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339 (460)
Q Consensus 302 ~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~ 339 (460)
....|.+|.|++.|.|+|-. ...+....+++.
T Consensus 103 H~v~l~~L~p~T~Y~Yrvg~------~~~s~~~~F~T~ 134 (427)
T PLN02533 103 NDVVIGPLKPNTVYYYKCGG------PSSTQEFSFRTP 134 (427)
T ss_pred EEEEeCCCCCCCEEEEEECC------CCCccceEEECC
Confidence 45789999999999999931 223556677764
No 475
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=42.63 E-value=49 Score=23.15 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=17.6
Q ss_pred eeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCC
Q psy535 410 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD 448 (460)
Q Consensus 410 ~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~ 448 (460)
..|..+. ..-.|+|.++.||+ |.+.+.+-..+|+
T Consensus 41 qYwt~td----~~G~Fti~~V~pGt-Y~L~ay~~g~~g~ 74 (95)
T PF14686_consen 41 QYWTRTD----SDGNFTIPNVRPGT-YRLYAYADGIFGD 74 (95)
T ss_dssp EEEEE------TTSEEE---B-SEE-EEEEEEE----TT
T ss_pred cEEEEeC----CCCcEEeCCeeCcE-eEEEEEEecccCc
Confidence 4455543 45689999999996 9988888444444
No 476
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=41.72 E-value=45 Score=25.57 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=20.6
Q ss_pred cceEEECCCCcCceEEEEEEEeecC
Q psy535 422 STQITINRLTPATTYEFQVVGKNEL 446 (460)
Q Consensus 422 ~~~~~i~~L~p~~~Y~~~v~a~n~~ 446 (460)
...|.+.+|.||++|.|+-...+..
T Consensus 101 lsaYqVtNL~pGTkY~isY~Vtkgt 125 (184)
T PF07353_consen 101 LSAYQVTNLQPGTKYYISYLVTKGT 125 (184)
T ss_pred ceeEEeeccCCCcEEEEEEEEecCc
Confidence 3568899999999999988876653
No 477
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=41.60 E-value=78 Score=20.14 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=12.9
Q ss_pred cCCCCeEEEEeeeeccCCCCCCeeEEE
Q psy535 164 RKVGESVDMHCEAQEAEGTQKPTITWQ 190 (460)
Q Consensus 164 ~~~g~~~~l~C~~~~~~~~p~~~~~W~ 190 (460)
+..|++++| .|.+...+.|+
T Consensus 2 v~~G~N~TL-------~Gp~~~~V~Wy 21 (63)
T PF02440_consen 2 VTVGSNVTL-------VGPPDGPVTWY 21 (63)
T ss_pred EeEcCcEEE-------eCCCCCceEEE
Confidence 345777776 44455578898
No 478
>PHA03289 envelope glycoprotein I; Provisional
Probab=41.29 E-value=66 Score=28.07 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=25.5
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 53 (460)
.|.|.+.+.+|+|.|.-++.-..... ..-+.+.|
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga~~-sDvF~lsv 156 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGRNK-SDIFRTSV 156 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCcc-CceEEEEE
Confidence 79999999999999999999764432 33344444
No 479
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=40.21 E-value=20 Score=33.40 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=21.8
Q ss_pred cceEEEeeCC-eEEEeecCCCCCeeEEEEEEeC
Q psy535 9 ETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNG 40 (460)
Q Consensus 9 ~~r~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~ 40 (460)
...+++..++ .|+|.++..+++|.|.|.+.-.
T Consensus 259 ~~~~~~~~~~~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 259 VPGLRWASNGVDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp -TTEEE-TTSSSEEESS--GGG-EEEEEEEEET
T ss_pred CccccccCCCcceEecCCCcccCceEEEEEEEC
Confidence 3455665555 8999999999999999998843
No 480
>PHA02935 Hypothetical protein; Provisional
Probab=39.92 E-value=45 Score=26.53 Aligned_cols=88 Identities=14% Similarity=0.269 Sum_probs=47.7
Q ss_pred eEEEeeCCeecCccccccEE----------EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeC
Q psy535 88 YVTWTKDKRLLEPYQTKDIV----------VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK 157 (460)
Q Consensus 88 ~v~W~~~~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~ 157 (460)
.-.|+.+++.+.-....+.. ...-.-|.|..++.+|+|.|.-...-..|.. ...+..+.|... .+...
T Consensus 68 ytswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvi-vtttmnisvkan-iidlt 145 (349)
T PHA02935 68 YTSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVI-VTTTMNISVKAN-IIDLT 145 (349)
T ss_pred cceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceE-EEEEEEEEEEee-eEecc
Confidence 46899988876432222210 0011137778888999999987765555554 334444544322 11111
Q ss_pred CCcccccCCCCeEEEEeeee
Q psy535 158 PEAMYQRKVGESVDMHCEAQ 177 (460)
Q Consensus 158 ~~~~~~~~~g~~~~l~C~~~ 177 (460)
....+....-..+.+.|++.
T Consensus 146 grvryltrnycevkirceik 165 (349)
T PHA02935 146 GRVRYLTRNYCEVKIRCEIK 165 (349)
T ss_pred ceeeeeccccEEEEEEEEEe
Confidence 11122334455788888874
No 481
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=39.63 E-value=1.2e+02 Score=20.66 Aligned_cols=63 Identities=21% Similarity=0.168 Sum_probs=36.1
Q ss_pred cceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee-eccCC--CCcceEEE-CCC
Q psy535 355 NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP-IPVTP--PGSTQITI-NRL 430 (460)
Q Consensus 355 ~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~i-~~L 430 (460)
...++|+|+... .....|.|.....+.-. .. .+.. +...+ .+...+++ .+|
T Consensus 12 g~~~~I~W~~~~---~~~~~~~I~L~~g~~~~-~~---------------------~~~~ia~~v~~~~gs~~~~~p~~l 66 (93)
T PF10342_consen 12 GQPITITWTSDG---TDPGNVTIYLCNGNNTN-LN---------------------FVQTIASNVSNSDGSYTWTIPSDL 66 (93)
T ss_pred CCcEEEEEeCCC---CCCcEEEEEEEcCCCCC-cc---------------------eeEEEEecccCCCCEEEEEcCCCC
Confidence 467999999864 22366888877643200 00 0000 11111 13455666 469
Q ss_pred CcCceEEEEEEE
Q psy535 431 TPATTYEFQVVG 442 (460)
Q Consensus 431 ~p~~~Y~~~v~a 442 (460)
.++..|.|++..
T Consensus 67 ~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 67 PSGGDYFIQIVN 78 (93)
T ss_pred CCCCcEEEEEEE
Confidence 999999999983
No 482
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=39.41 E-value=78 Score=20.32 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=28.5
Q ss_pred EEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCC
Q psy535 279 YVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD 327 (460)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~ 327 (460)
|..|+++........+.+....-..+.-..+.+...|..+|.+....|.
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~ 56 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQ 56 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCC
Confidence 4556655443333333333333445566667778888888888877664
No 483
>PHA03189 UL14 tegument protein; Provisional
Probab=39.36 E-value=70 Score=27.69 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=22.1
Q ss_pred ceEEEeeCC---eEEEe-ecCCCCCeeEEEEEEeCCCCc
Q psy535 10 TRVVIKKDG---TLVIN-PVGSDDSGLYMCEVSNGIGEP 44 (460)
Q Consensus 10 ~r~~~~~~~---~L~i~-~~~~~d~G~Y~C~~~~~~~~~ 44 (460)
.+.++..-| .|.++ ++..+-+|.|.|...|.....
T Consensus 121 ~~W~Fedlg~aq~ltLtF~v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 121 ASWKFEDLGAAQRLTLTFRVSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred ceeeeecccceeEEEEEEEEEecccceEEEEecccccee
Confidence 455554444 23322 445577899999999986554
No 484
>PHA03292 envelope glycoprotein I; Provisional
Probab=39.23 E-value=1e+02 Score=27.67 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.1
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCC
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGE 43 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~ 43 (460)
.|.|.+.+.+|+|.|.-++.-....
T Consensus 129 LL~I~~P~~~DSGiY~LRV~Ldga~ 153 (413)
T PHA03292 129 LLNITGPQPADSGAYILRVKLDHAP 153 (413)
T ss_pred EEEeCCCCcccceeEEEEEEeCCCc
Confidence 8999999999999999999976443
No 485
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=37.07 E-value=2.2e+02 Score=28.62 Aligned_cols=89 Identities=19% Similarity=0.342 Sum_probs=52.5
Q ss_pred CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcc
Q psy535 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGST 423 (460)
Q Consensus 345 ~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (460)
+...+++...+ +.+.|+|+... .--.|.|++.....- .| .........|......+ ..
T Consensus 7 ~vtslrI~kLsaN~v~l~WddVG----~NFyY~Ve~a~t~~~----~g-----------~~ip~~~~~w~nlg~T~--~~ 65 (1030)
T PHA02579 7 SVTSLRIDKLSANQVYLTWDDVG----ANFYYFVELAETRDA----DG-----------ELIPDDELRWINLGYTA--NN 65 (1030)
T ss_pred cccEEEhhhhccceEEEEeeccC----CceEEEEEEEeeccC----CC-----------ccCCCccccceecCccc--ch
Confidence 45567776666 68999999753 346788888854320 00 01122445566554432 22
Q ss_pred eEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535 424 QITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456 (460)
Q Consensus 424 ~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~ 456 (460)
.+.-..++|.+.|.+||+..- .|. ++|+|+.
T Consensus 66 ~wFed~~~p~t~Yk~Rv~~~~-qGF-e~SdWv~ 96 (1030)
T PHA02579 66 EWFEDKLQPNTYYKFRVAVAA-QGF-EQSDWVY 96 (1030)
T ss_pred hhhhhccCCcceEEEEEEeec-cCC-CccccEE
Confidence 333445999999999998654 333 2555543
No 486
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=36.94 E-value=55 Score=21.58 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.7
Q ss_pred CCcceEEECCCCcCceEEEEEEEe
Q psy535 420 PGSTQITINRLTPATTYEFQVVGK 443 (460)
Q Consensus 420 ~~~~~~~i~~L~p~~~Y~~~v~a~ 443 (460)
...++|.-.+|.+|..|.++|.|.
T Consensus 26 G~~R~F~T~~L~~G~~y~Y~v~a~ 49 (75)
T TIGR03000 26 GTVRTFTTPPLEAGKEYEYTVTAE 49 (75)
T ss_pred ccEEEEECCCCCCCCEEEEEEEEE
Confidence 345788889999999999999994
No 487
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=36.61 E-value=99 Score=18.74 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=21.1
Q ss_pred eEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535 424 QITINRLTPATTYEFQVVGKNELGDGMLS 452 (460)
Q Consensus 424 ~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s 452 (460)
++.+..+ ....|.|.|.|...+|.....
T Consensus 15 s~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 15 SFTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred EEeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 3445555 577999999999999975444
No 488
>PHA02935 Hypothetical protein; Provisional
Probab=36.33 E-value=79 Score=25.20 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=37.4
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecce-eeEEEEEEEec
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFR-LQGVVQCHIKA 82 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~ 82 (460)
-|.|+.++-+|+|.|.-......|....++..+.|... -+.+......+..+ -.+.++|....
T Consensus 103 clnisslryedsgsykgvshlkdgvivtttmnisvkan-iidltgrvryltrnycevkirceiks 166 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKAN-IIDLTGRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred EeeccceeeccCCcccCchhhcCceEEEEEEEEEEEee-eEeccceeeeeccccEEEEEEEEEee
Confidence 37789999999999998777777765555566665431 11122222222211 24677887643
No 489
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=35.02 E-value=1.5e+02 Score=20.28 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=25.1
Q ss_pred eEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC------eEEEeecCCCC-CeEEEEEEE
Q psy535 73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG------SLLFTRVNQNH-QGRYTCTPY 132 (460)
Q Consensus 73 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d-~G~y~C~~~ 132 (460)
...|.|.+.+......|+--++-..+.........+.++. ......-+... -|.|+|+..
T Consensus 17 etSL~Ci~s~W~s~esitigrd~~~~~nqh~~plEv~~de~R~~ak~vvwkrekas~~~GayyCegk 83 (96)
T PF10430_consen 17 ETSLTCIASDWSSHESITIGRDFEALMNQHQEPLEVPQDETRPHAKKVVWKREKASEAIGAYYCEGK 83 (96)
T ss_dssp -EEEEEEE-SS--SS--EEEE-TTTSTT-------EEEETTSSSEEEEEE-TTT-SS--EEEEEEEE
T ss_pred ceeEEEEecCCcCCCcEEecccchhhhhcccCCcccccCCCCcccceEEEEeeccccccceEEEEEE
Confidence 3489999988755556777665443321111112222221 23344333333 499999976
No 490
>PHA03291 envelope glycoprotein I; Provisional
Probab=34.47 E-value=95 Score=27.54 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=26.3
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 54 (460)
.|.|.+...+|+|.|.-++.-..... ..-+.|.+.
T Consensus 130 LL~i~~P~~~DsGiYvLRV~vdgat~-adlF~lg~~ 164 (401)
T PHA03291 130 LLRARGAARAVVGLYVLRVWVEGATN-ASLFPLGLA 164 (401)
T ss_pred EEEecCCCcccceeEEEEEEeCCCcc-cceEEEeee
Confidence 79999999999999999999765442 333444443
No 491
>KOG4228|consensus
Probab=31.77 E-value=80 Score=32.97 Aligned_cols=106 Identities=23% Similarity=0.340 Sum_probs=65.8
Q ss_pred EEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCC
Q psy535 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIR 394 (460)
Q Consensus 317 ~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~ 394 (460)
|.|.+....|-+.....+.+. .. |..|..+.++... .++.+.|..+.. ....|.+.++...+ +..+.
T Consensus 2 Y~~~~~~~~~~~~~~~~v~v~--~~-p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~~~~~~----- 70 (1087)
T KOG4228|consen 2 YTCLARSGLGPGELITYVRVN--GG-PPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSGYGYID----- 70 (1087)
T ss_pred eeeeecccCCCccceEEEEec--CC-CCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccCcceee-----
Confidence 678888777766544444443 33 4444445555544 588999988754 55667777765332 11110
Q ss_pred CCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 395 PEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
......+....+.+...|.+ .++|..|.+.++.++.-+|
T Consensus 71 ------------------------~~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt 109 (1087)
T KOG4228|consen 71 ------------------------VDLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRT 109 (1087)
T ss_pred ------------------------ccceeecccCCCCCcchhhh--hhcccccccccccccCCcc
Confidence 01223356667788888887 9999999999888765443
No 492
>KOG3611|consensus
Probab=31.47 E-value=1e+02 Score=31.17 Aligned_cols=60 Identities=25% Similarity=0.416 Sum_probs=37.3
Q ss_pred eEEEEEEEecCCCCCeEEEee--CC--eecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 73 QGVVQCHIKANPTFQYVTWTK--DK--RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 73 ~~~l~C~~~~~~~~~~v~W~~--~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
+..|.|...+... .+.|+. .+ ................|.+.+..++..|+|.|.|.+...
T Consensus 571 ~~~l~c~~~~~~a--~~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 571 SEVLRCVPSSNQA--PVVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cceeecccccccc--ceeeEeeccCccccceeccCcceeecccCceeEEEEeeccCcccccccccC
Confidence 3578887655432 388974 22 111111333333344566888999999999999998653
No 493
>KOG1948|consensus
Probab=30.93 E-value=2.1e+02 Score=29.29 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred ceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEe--ecCCCC
Q psy535 372 IQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK--NELGDG 449 (460)
Q Consensus 372 i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~--n~~G~s 449 (460)
+.||++-|..=|.....+ ..+...-.++..-+.. .-..-.......-+|.|.||.|+..|.++|.+. |+-=+-
T Consensus 900 l~gkRvAySayGtvssLs----Gdp~~gVaieA~sdn~-~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~~n~~ier 974 (1165)
T KOG1948|consen 900 LKGKRVAYSAYGTVSSLS----GDPMKGVAIEALSDNC-DLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYADNSPIER 974 (1165)
T ss_pred EEEEEEEEEeeeehhhcc----CCcccCeEEEEecCCC-CccccccccccCCcEEEeccCCCceEEEEEeeccCCCcccc
Q ss_pred CCCceeEee
Q psy535 450 MLSNIVVVK 458 (460)
Q Consensus 450 ~~s~~~~~~ 458 (460)
.......++
T Consensus 975 s~P~s~tv~ 983 (1165)
T KOG1948|consen 975 SFPRSFTVS 983 (1165)
T ss_pred cCCceEEEE
No 494
>KOG1026|consensus
Probab=30.83 E-value=2.1e+02 Score=28.97 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=44.1
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
.+..+..+++.|.. .+.+.|.+.|............. ....+....+ ...+.|.+.|..|.....+.+.+.
T Consensus 203 ~v~~~~~~~~~c~~---~~~~vp~~~~~~~~~~~~~~~~~--~~~c~~~~~~----~~~~~c~~E~~~~~~~~~v~~~~~ 273 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQ---AGIPVPCHYWFPNCLASSNTNQT--SSLCRSECEV----LENDLCIAENAVARSNPSILLVVD 273 (774)
T ss_pred hhcccchheeeeec---ccCCCcceeeecccccccCCCcc--ccccccccee----eechhhHHHHhhhhcCceeeeEEe
Confidence 45678899999998 79999999999744322211110 0000111111 112889999999887777666665
Q ss_pred c
Q psy535 243 G 243 (460)
Q Consensus 243 ~ 243 (460)
.
T Consensus 274 ~ 274 (774)
T KOG1026|consen 274 L 274 (774)
T ss_pred c
Confidence 3
No 495
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=29.90 E-value=17 Score=34.14 Aligned_cols=156 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEe--cCCeeEEcce---eeeecceeeEEEEEEEecC---CCCC
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVE--FPAKVTFTPT---VQYLPFRLQGVVQCHIKAN---PTFQ 87 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~--~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~---~~~~ 87 (460)
..|.|......-.-.|+..+.-..+. ..+....|.|. .+|.+.+... ...+..++.+.|...+.+. ....
T Consensus 148 ~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~ 227 (440)
T PF02010_consen 148 SSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNV 227 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCE
Confidence 36666544433333376666543333 22344444443 3444433221 1236667666665444332 2234
Q ss_pred eEEEee--------CCeecCccccccEEEeecCeEEEeecCCCCCeEEEE--EEEcCCCCcceeeEEEEEeeCCCc---e
Q psy535 88 YVTWTK--------DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC--TPYNAHGTQGSSGQMEVLVRKPPA---F 154 (460)
Q Consensus 88 ~v~W~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C--~~~~~~g~~~~~~~~~v~v~~~p~---~ 154 (460)
.+.|.. ....+...............|.|..-.....+.|.. .+.+..+... .+.+.+.+..||. +
T Consensus 228 ~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~-~a~~~~~~n~pP~~g~c 306 (440)
T PF02010_consen 228 SYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSG-SASISFTVNAPPSGGSC 306 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 689987 111111000111111223357777666666677765 4554444321 4556666677773 4
Q ss_pred eeCCCcccccCCCCeEEEEeee
Q psy535 155 TIKPEAMYQRKVGESVDMHCEA 176 (460)
Q Consensus 155 ~~~~~~~~~~~~g~~~~l~C~~ 176 (460)
.+.|... ......+++.|.-
T Consensus 307 ~v~P~~G--~al~T~Ft~~c~~ 326 (440)
T PF02010_consen 307 SVSPSSG--YALETTFTITCSG 326 (440)
T ss_dssp ----------------------
T ss_pred ccccccc--ccccccccccccc
Confidence 4555432 3455678888864
No 496
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=28.85 E-value=80 Score=23.52 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=17.7
Q ss_pred ceEEECCCCcCceEEEEEEEeecCC
Q psy535 423 TQITINRLTPATTYEFQVVGKNELG 447 (460)
Q Consensus 423 ~~~~i~~L~p~~~Y~~~v~a~n~~G 447 (460)
....+.||.|++.|+++.......|
T Consensus 5 ~~I~v~GL~p~~~vtl~a~~~~~~g 29 (126)
T PF04775_consen 5 VDIRVSGLPPGQEVTLRARLTDDNG 29 (126)
T ss_dssp -EEEEES--TT-EEEEEEEEE-TTS
T ss_pred eEEEEeCCCCCCEEEEEEEEEeCCC
Confidence 4567999999999999999998777
No 497
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=28.79 E-value=80 Score=20.15 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=20.1
Q ss_pred eeecceeeEEEEEEEecCCCCCeEEEeeCC
Q psy535 66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDK 95 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~ 95 (460)
..+..|+.+.|...... ..+..+.|..++
T Consensus 6 ~~~~~g~~v~f~~~~~~-g~~~~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSD-GSPVTYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETTTT-SSECEEEEE-SS
T ss_pred CEEcCCCEEEEEEEccC-CCCeEEEEEECC
Confidence 34667888999988733 334479999988
No 498
>PF10333 Pga1: GPI-Mannosyltransferase II co-activator; InterPro: IPR019433 Pga1 is found only in yeasts and not in mammals. It localises in the ER as a glycosylated integral membrane protein. It binds to the GPI-mannosyltransferase II subunit of the GPI and it is responsible for the second mannose addition to GPI precursors. The GPI-anchoring complex is a glycolipid that functions as a membrane anchor for many cell-surface proteins [].
Probab=27.88 E-value=83 Score=25.20 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=17.5
Q ss_pred CcceEEECCCCcCceEEEEEE
Q psy535 421 GSTQITINRLTPATTYEFQVV 441 (460)
Q Consensus 421 ~~~~~~i~~L~p~~~Y~~~v~ 441 (460)
...-+.+.+|+++..|++|++
T Consensus 64 ~t~~V~L~nl~~~e~y~vKiC 84 (180)
T PF10333_consen 64 STTYVELNNLQPGETYQVKIC 84 (180)
T ss_pred ceEEEEeccCCCCCeEEEEEE
Confidence 345567889999999999997
No 499
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=27.58 E-value=1e+02 Score=23.13 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=20.5
Q ss_pred CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCC
Q psy535 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDG 194 (460)
Q Consensus 150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~ 194 (460)
+|=.+..-|... .+..|+++.+.|.......... ..+.|...+|
T Consensus 31 YpF~v~tmPVpk-~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dG 76 (137)
T PF12988_consen 31 YPFTVETMPVPK-KIKKGETVEIRCELKREGNYADTRYTIRYFQPDG 76 (137)
T ss_dssp -SEEEEE----S-S--TTEEEEEEEEEEESS--SS---EEEEE-SSS
T ss_pred CCcEEEEecccc-ccCCCCEEEEEEEEecCceecccEEEEEEEeecC
Confidence 343334444444 6789999999999864322222 3566665333
No 500
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=25.71 E-value=1.7e+02 Score=17.89 Aligned_cols=35 Identities=29% Similarity=0.558 Sum_probs=25.7
Q ss_pred cceEEEeeCC-eEEEeecCCC---CCeeEEEEEEeCCCC
Q psy535 9 ETRVVIKKDG-TLVINPVGSD---DSGLYMCEVSNGIGE 43 (460)
Q Consensus 9 ~~r~~~~~~~-~L~i~~~~~~---d~G~Y~C~~~~~~~~ 43 (460)
++-.++.+.| .+++..+... +.+.|.|.-.+..+.
T Consensus 4 GDvV~LKSGGp~MTV~~v~~~~~~~~~~v~C~WFd~~~~ 42 (53)
T PF09926_consen 4 GDVVQLKSGGPRMTVTEVGPNAGASGGWVECQWFDGHGE 42 (53)
T ss_pred CCEEEEccCCCCeEEEEccccccCCCCeEEEEeCCCCCc
Confidence 4556776666 7788877654 678999999887665
Done!