Query psy535
Match_columns 460
No_of_seqs 253 out of 2198
Neff 11.8
Searched_HMMs 29240
Date Sat Aug 17 00:20:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jll_A NCAM2, neural cell adhe 100.0 1.8E-46 6.3E-51 344.0 43.5 368 56-460 1-385 (389)
2 3b43_A Titin; I-SET IG fold, e 100.0 5.1E-37 1.7E-41 294.4 36.5 410 1-450 41-467 (570)
3 3b43_A Titin; I-SET IG fold, e 100.0 2.1E-37 7.3E-42 297.0 31.9 395 18-456 157-567 (570)
4 2v5y_A Receptor-type tyrosine- 100.0 1.4E-34 4.8E-39 285.5 36.7 412 19-459 124-561 (731)
5 1e07_A Carcinoembryonic antige 100.0 6.2E-33 2.1E-37 270.7 43.7 383 8-454 61-457 (642)
6 2jll_A NCAM2, neural cell adhe 100.0 1.4E-33 4.8E-38 258.4 33.0 321 9-339 51-385 (389)
7 1e07_A Carcinoembryonic antige 100.0 1.1E-32 3.9E-37 268.8 41.3 387 2-449 147-546 (642)
8 3dmk_A DOWN syndrome cell adhe 100.0 7.3E-34 2.5E-38 284.8 33.1 397 9-454 298-708 (816)
9 2ocw_A Polymeric-immunoglobuli 100.0 1E-31 3.5E-36 259.4 44.7 411 8-451 60-537 (585)
10 2v5y_A Receptor-type tyrosine- 100.0 5.8E-32 2E-36 266.8 42.3 348 71-460 91-458 (731)
11 2ec8_A MAST/stem cell growth f 100.0 9.2E-34 3.2E-38 269.7 24.0 323 2-339 152-511 (524)
12 3laf_A Deleted in colorectal c 100.0 6.9E-34 2.4E-38 261.8 21.3 315 8-336 67-399 (403)
13 2v5m_A Dscam; neurobiology SPL 100.0 1.1E-33 3.8E-38 259.0 20.6 310 9-335 50-386 (388)
14 2nzi_A Titin; IG-domain, FNIII 100.0 3.1E-32 1.1E-36 240.8 28.8 270 55-335 3-287 (305)
15 3kld_A Contactin 4, axcam, BIG 100.0 1.7E-34 5.8E-39 263.3 14.6 313 9-336 54-381 (384)
16 1cs6_A Axonin-1; neural cell a 100.0 2.7E-33 9.4E-38 255.8 17.9 312 9-336 53-380 (382)
17 2wim_A N-CAM 2, NCAM2, neural 100.0 9E-32 3.1E-36 236.2 24.7 241 2-246 41-287 (291)
18 3dmk_A DOWN syndrome cell adhe 100.0 1.6E-30 5.5E-35 260.6 36.7 398 18-455 389-805 (816)
19 2ec8_A MAST/stem cell growth f 100.0 3.8E-32 1.3E-36 258.6 23.4 305 16-337 78-410 (524)
20 1bih_A Hemolin; insect immunit 100.0 8E-32 2.7E-36 247.3 20.7 305 16-335 60-393 (395)
21 1qz1_A Neural cell adhesion mo 100.0 4E-31 1.4E-35 232.0 24.0 235 4-242 44-289 (291)
22 3qs7_E FL cytokine receptor; i 100.0 1.1E-31 3.8E-36 246.3 19.6 295 19-338 104-414 (423)
23 2ocw_A Polymeric-immunoglobuli 100.0 9.4E-30 3.2E-34 245.6 34.0 317 8-338 169-546 (585)
24 1i1r_A GP130, interleukin-6 re 100.0 5.2E-30 1.8E-34 225.6 29.1 271 157-460 10-300 (303)
25 2rik_A Titin; I-SET IG fold, p 100.0 4.1E-30 1.4E-34 224.7 27.3 229 6-242 46-283 (284)
26 3p3y_A Neurofascin; IG domains 100.0 2.5E-31 8.6E-36 244.8 19.7 316 10-336 64-401 (404)
27 3qs9_E FL cytokine receptor; i 100.0 2.8E-31 9.6E-36 250.0 19.6 290 22-334 195-506 (527)
28 3qs9_E FL cytokine receptor; i 100.0 1.9E-30 6.3E-35 244.4 24.9 293 19-336 104-412 (527)
29 2rcj_C Light chain; immunoglob 100.0 1.1E-29 3.8E-34 241.6 29.1 315 8-329 57-411 (523)
30 2rik_A Titin; I-SET IG fold, p 100.0 4.9E-29 1.7E-33 217.9 27.2 270 54-336 3-282 (284)
31 1wio_A CD4, T-cell surface gly 100.0 4.6E-30 1.6E-34 232.4 20.9 267 7-325 50-351 (363)
32 3kld_A Contactin 4, axcam, BIG 100.0 1E-29 3.4E-34 231.8 22.6 223 10-242 149-382 (384)
33 3laf_A Deleted in colorectal c 100.0 1.5E-29 5.1E-34 232.8 23.8 229 7-243 166-401 (403)
34 4fqp_A Poliovirus receptor; im 100.0 6.5E-30 2.2E-34 226.5 20.2 223 18-247 79-308 (313)
35 1z7z_I Intercellular adhesion 100.0 5.5E-29 1.9E-33 232.3 27.0 277 19-326 51-351 (450)
36 2d9q_B Granulocyte colony-stim 100.0 1.3E-28 4.4E-33 217.7 27.1 264 163-460 11-306 (313)
37 2yd9_A Receptor-type tyrosine- 100.0 2.4E-29 8.3E-34 221.9 22.2 217 19-243 64-291 (304)
38 1qgc_4 Protein (immunoglobulin 100.0 1.1E-29 3.6E-34 236.4 20.2 310 8-328 62-429 (438)
39 4fom_A Poliovirus receptor-rel 100.0 2.8E-29 9.7E-34 222.0 15.1 231 8-243 60-300 (308)
40 3oq3_B IFN-alpha/beta binding 100.0 6.7E-28 2.3E-32 215.0 23.7 219 16-241 87-328 (329)
41 1qz1_A Neural cell adhesion mo 100.0 7E-28 2.4E-32 211.3 22.8 270 56-337 2-289 (291)
42 2o26_X MAST/stem cell growth f 100.0 3.9E-28 1.3E-32 212.8 20.5 215 17-243 56-288 (290)
43 1bih_A Hemolin; insect immunit 100.0 1E-27 3.5E-32 219.9 24.1 227 9-241 152-394 (395)
44 3ejj_X Macrophage colony-stimu 100.0 4.7E-28 1.6E-32 212.2 20.7 217 18-243 51-281 (289)
45 2wim_A N-CAM 2, NCAM2, neural 100.0 2.9E-27 1E-31 207.4 25.3 267 55-337 3-283 (291)
46 1z7z_I Intercellular adhesion 100.0 5.8E-28 2E-32 225.4 21.8 282 18-337 142-448 (450)
47 3p3y_A Neurofascin; IG domains 100.0 5E-28 1.7E-32 222.7 20.3 230 4-242 157-402 (404)
48 1n26_A IL-6 receptor alpha cha 100.0 1.6E-26 5.4E-31 205.1 28.3 255 163-454 17-287 (325)
49 2v5m_A Dscam; neurobiology SPL 100.0 4.6E-27 1.6E-31 215.0 25.6 348 56-453 3-383 (388)
50 3v2a_R Vascular endothelial gr 100.0 5.3E-30 1.8E-34 255.8 5.5 392 18-457 290-754 (772)
51 2y25_A Myomesin; structural pr 100.0 8.1E-29 2.8E-33 220.2 12.4 229 6-243 48-315 (317)
52 1cs6_A Axonin-1; neural cell a 100.0 9.3E-28 3.2E-32 219.1 19.5 223 8-242 147-381 (382)
53 2rcj_C Light chain; immunoglob 100.0 1.2E-26 4.2E-31 220.6 26.7 297 19-326 179-512 (523)
54 2y23_A Myomesin; structural pr 100.0 3.5E-28 1.2E-32 215.5 14.8 228 2-241 39-310 (312)
55 4dep_C Interleukin-1 receptor 100.0 1.3E-27 4.6E-32 215.2 18.7 230 8-243 70-333 (349)
56 1igt_B IGG2A intact antibody - 100.0 1.5E-27 5E-32 222.1 19.4 311 8-325 64-432 (444)
57 2yd9_A Receptor-type tyrosine- 100.0 1.7E-27 5.9E-32 210.1 17.7 266 54-337 4-290 (304)
58 1ry7_B FGFR-3, fibroblast grow 100.0 4.9E-28 1.7E-32 216.7 14.0 237 2-245 46-329 (334)
59 4dkd_C Macrophage colony-stimu 100.0 1.8E-27 6.1E-32 208.8 16.9 217 19-243 52-281 (292)
60 2nzi_A Titin; IG-domain, FNIII 100.0 3.4E-26 1.1E-30 202.0 24.8 267 150-456 3-287 (305)
61 3u83_A Poliovirus receptor-rel 100.0 9E-27 3.1E-31 208.2 21.1 227 6-243 76-320 (331)
62 1itb_B Type 1 interleukin-1 re 100.0 1.5E-27 5.2E-32 211.7 15.6 227 8-242 53-313 (315)
63 3v2a_R Vascular endothelial gr 99.9 9.5E-30 3.3E-34 253.9 0.0 313 11-338 374-756 (772)
64 1iga_A IGA1; immunoglobulin; N 99.9 4E-25 1.4E-29 207.2 30.7 308 8-326 65-442 (475)
65 3rjd_A High affinity immunoglo 99.9 3E-25 1E-29 191.4 26.4 250 57-336 2-258 (262)
66 3qs7_E FL cytokine receptor; i 99.9 1.3E-26 4.5E-31 212.6 18.0 209 26-244 199-415 (423)
67 1hzh_H IGG, immunoglobulin hea 99.9 1.2E-26 4.1E-31 216.6 18.0 311 8-326 64-442 (457)
68 2y25_A Myomesin; structural pr 99.9 1.6E-26 5.6E-31 205.3 15.8 269 55-337 6-314 (317)
69 3o4o_C Interleukin-1 receptor 99.9 1.3E-26 4.5E-31 207.8 14.5 228 9-241 73-333 (339)
70 1igy_B IGG1 intact antibody MA 99.9 3.2E-27 1.1E-31 219.0 10.6 311 8-326 63-423 (434)
71 1ry7_B FGFR-3, fibroblast grow 99.9 1.9E-26 6.3E-31 206.4 13.7 263 62-338 14-327 (334)
72 2o26_X MAST/stem cell growth f 99.9 6.4E-25 2.2E-29 192.2 22.0 251 55-330 11-280 (290)
73 3oq3_B IFN-alpha/beta binding 99.9 1.1E-25 3.8E-30 200.6 17.4 257 64-332 37-324 (329)
74 3l5h_A Interleukin-6 receptor 99.9 6.3E-26 2.2E-30 218.9 16.0 342 61-455 8-392 (589)
75 3vh8_G Killer cell immunoglobu 99.9 1.2E-24 4.2E-29 192.8 22.9 269 49-338 17-311 (316)
76 2vkw_A Neural cell adhesion mo 99.9 6.4E-25 2.2E-29 182.0 19.6 191 244-460 7-202 (209)
77 3o4o_C Interleukin-1 receptor 99.9 1.8E-25 6.2E-30 200.4 15.0 274 54-334 16-331 (339)
78 2y23_A Myomesin; structural pr 99.9 4.6E-25 1.6E-29 195.4 17.3 257 63-331 8-305 (312)
79 2wng_A Tyrosine-protein phosph 99.9 2.8E-25 9.5E-30 198.0 15.5 212 17-234 73-310 (327)
80 3rjd_A High affinity immunoglo 99.9 2.9E-24 1E-28 185.2 21.3 201 11-233 33-249 (262)
81 2q7n_A Leukemia inhibitory fac 99.9 6.6E-25 2.3E-29 201.4 17.5 279 143-460 195-485 (488)
82 3ejj_X Macrophage colony-stimu 99.9 1E-24 3.4E-29 191.0 17.0 262 56-336 4-279 (289)
83 3vh8_G Killer cell immunoglobu 99.9 3.5E-24 1.2E-28 189.9 20.2 216 17-243 73-313 (316)
84 3p4l_A Neogenin; iron homeosta 99.9 7.8E-24 2.7E-28 175.8 20.8 193 244-460 3-203 (211)
85 4fqp_A Poliovirus receptor; im 99.9 4.3E-24 1.5E-28 189.1 20.1 264 61-337 5-303 (313)
86 2yd1_A Tyrosine-protein phosph 99.9 1.8E-23 6.1E-28 173.9 22.7 182 55-243 5-200 (212)
87 1cfb_A Drosophila neuroglian; 99.9 1.7E-23 6E-28 172.8 22.4 191 244-460 4-202 (205)
88 4fom_A Poliovirus receptor-rel 99.9 5.4E-25 1.8E-29 194.5 13.9 261 65-337 8-299 (308)
89 1wio_A CD4, T-cell surface gly 99.9 1.7E-23 5.7E-28 189.3 23.9 274 65-365 3-320 (363)
90 4dep_C Interleukin-1 receptor 99.9 2.8E-24 9.6E-29 193.5 18.3 267 63-336 14-331 (349)
91 2v5t_A NCAM2, N-CAM 2, neural 99.9 8E-24 2.7E-28 172.7 18.8 183 56-242 2-187 (189)
92 3mjg_X Beta-type platelet-deri 99.9 7.8E-24 2.7E-28 185.2 19.2 217 10-243 39-278 (289)
93 2iep_A Muscle-specific kinase 99.9 5.3E-24 1.8E-28 174.3 15.8 183 54-243 5-190 (192)
94 4dkd_C Macrophage colony-stimu 99.9 7.7E-25 2.6E-29 192.0 10.8 264 55-338 3-281 (292)
95 2a38_A Titin; Z1Z2, structural 99.9 1.6E-23 5.4E-28 171.8 17.3 182 55-241 4-193 (194)
96 2j8h_A Titin, connectin; cardi 99.9 2.7E-23 9.1E-28 170.8 18.7 181 55-242 3-196 (197)
97 2c5d_C AXL oncogene, tyrosine- 99.9 4.3E-23 1.5E-27 169.2 19.6 177 56-241 2-191 (195)
98 1itb_B Type 1 interleukin-1 re 99.9 3.4E-24 1.2E-28 190.0 13.4 265 65-336 14-312 (315)
99 3mjg_X Beta-type platelet-deri 99.9 6.2E-23 2.1E-27 179.5 20.9 254 62-341 6-281 (289)
100 3fl7_A Ephrin receptor; ATP-bi 99.9 6.1E-24 2.1E-28 196.2 14.4 216 215-460 303-532 (536)
101 2wng_A Tyrosine-protein phosph 99.9 3.1E-23 1.1E-27 184.7 18.4 261 58-328 5-309 (327)
102 2wv3_A Neuroplastin; igcam, me 99.9 1.2E-22 4.2E-27 165.7 20.4 176 55-242 2-189 (190)
103 2oz4_A Intercellular adhesion 99.9 4.2E-23 1.4E-27 178.0 18.5 200 18-243 56-264 (265)
104 3u83_A Poliovirus receptor-rel 99.9 1E-23 3.6E-28 188.3 15.0 267 58-337 16-319 (331)
105 1epf_A NCAM, protein (neural c 99.9 1.9E-22 6.4E-27 164.9 20.9 180 56-241 2-189 (191)
106 3lcy_A Titin; A-BAND, IG tande 99.9 8E-23 2.7E-27 168.0 18.6 182 54-243 5-196 (197)
107 3f7q_A Integrin beta-4, GP150; 99.9 1.8E-22 6E-27 170.3 20.7 191 245-460 5-198 (234)
108 1rhf_A Tyrosine-protein kinase 99.9 1.1E-22 3.6E-27 164.9 18.4 175 56-241 2-181 (182)
109 2v44_A NCAM2, neural cell adhe 99.9 2.9E-22 1E-26 163.4 20.6 174 59-241 5-185 (189)
110 1zvo_C Myeloma immunoglobulin 99.9 2.5E-21 8.7E-26 182.5 29.9 313 8-328 65-493 (512)
111 2yd6_A PTPRD protein; hydrolas 99.9 2.2E-22 7.5E-27 167.2 19.5 182 54-242 4-203 (212)
112 2c1o_A IGK-C protein; FAB frag 99.9 3.5E-23 1.2E-27 177.3 14.4 208 14-233 3-245 (254)
113 1za6_B IGG heavy chain; immuno 99.9 4E-23 1.4E-27 185.2 14.7 219 8-232 64-330 (344)
114 3lpw_A A77-A78 domain from tit 99.9 3.9E-22 1.3E-26 163.8 19.5 184 245-456 5-191 (197)
115 2ibg_A CG9211-PA, GH03927P; IH 99.9 4.7E-22 1.6E-26 165.5 19.6 181 255-460 12-211 (214)
116 2oz4_A Intercellular adhesion 99.9 7.7E-22 2.6E-26 170.1 21.5 234 67-336 14-262 (265)
117 3sgj_C Human FCG3A receptor; r 99.9 2.1E-22 7.3E-27 165.6 17.2 169 56-245 7-176 (204)
118 1f97_A Junction adhesion molec 99.9 2.6E-22 8.7E-27 167.0 17.3 182 57-243 2-207 (212)
119 3l5i_A Interleukin-6 receptor 99.9 1.7E-21 5.7E-26 170.4 22.6 214 210-460 64-289 (290)
120 3rbs_A Myomesin-1; immunoglobu 99.9 1.8E-22 6E-27 166.2 15.2 177 57-241 4-205 (207)
121 3l5h_A Interleukin-6 receptor 99.9 3.3E-23 1.1E-27 200.0 12.6 270 157-459 9-298 (589)
122 1bqu_A Protein (GP130); cytoki 99.9 1.6E-21 5.5E-26 162.3 19.4 188 244-460 6-204 (215)
123 2va4_A NCAM2, N-CAM 2, neural 99.9 1.4E-21 4.9E-26 159.8 18.5 176 56-241 2-191 (192)
124 1qgc_4 Protein (immunoglobulin 99.9 3.1E-22 1.1E-26 186.0 16.4 212 18-238 181-434 (438)
125 3grw_A Fibroblast growth facto 99.9 2.5E-21 8.4E-26 164.5 20.0 179 63-245 22-220 (241)
126 2d3v_A Leukocyte immunoglobuli 99.9 1.5E-22 5.2E-27 165.9 11.7 169 55-232 4-181 (196)
127 3mtr_A N-CAM-1, NCAM-1, neural 99.9 3E-21 1E-25 160.8 19.5 185 150-340 18-211 (215)
128 1uct_A Immunoglobulin alpha FC 99.9 3.8E-22 1.3E-26 165.7 14.0 180 55-243 8-198 (218)
129 2v44_A NCAM2, neural cell adhe 99.9 1E-21 3.5E-26 160.1 15.5 147 2-149 39-188 (189)
130 1i1r_A GP130, interleukin-6 re 99.9 7.4E-20 2.5E-24 160.8 28.5 273 61-341 9-302 (303)
131 4fa8_A Secreted protein BARF1; 99.9 3.6E-22 1.2E-26 163.3 12.7 163 66-235 3-194 (203)
132 2wqr_A IG epsilon chain C regi 99.9 1E-22 3.4E-27 181.0 10.0 204 19-232 73-309 (323)
133 2r15_A Myomesin-1; sarcomeric 99.9 4.3E-21 1.5E-25 159.6 19.2 167 70-243 16-210 (212)
134 2gi7_A GPVI protein; IG-like d 99.9 1E-21 3.6E-26 159.0 14.9 159 55-231 7-168 (184)
135 3ojm_B Fibroblast growth facto 99.9 2.6E-21 8.8E-26 163.3 17.9 190 55-249 14-226 (231)
136 3k0w_A Mucosa-associated lymph 99.9 4.4E-21 1.5E-25 160.0 18.6 170 55-243 17-202 (218)
137 2vr9_A Roundabout 1, ROBO; imm 99.9 2.3E-21 7.9E-26 161.8 16.9 183 55-242 8-205 (217)
138 1fnl_A Low affinity immunoglob 99.9 3.1E-21 1.1E-25 154.9 16.9 166 56-243 7-174 (175)
139 1ugn_A LIR1, leukocyte immunog 99.9 6.2E-22 2.1E-26 162.5 13.0 168 55-231 4-181 (198)
140 3p2t_A Leukocyte immunoglobuli 99.9 9E-22 3.1E-26 161.3 13.9 167 56-231 5-179 (196)
141 2v9r_A Roundabout homolog 1; p 99.9 3.3E-21 1.1E-25 160.3 17.3 184 55-243 8-202 (212)
142 1oll_A NK receptor; immune sys 99.9 6.7E-22 2.3E-26 160.7 12.8 166 56-230 4-172 (188)
143 1fnf_A Fibronectin; RGD, extra 99.9 7.2E-19 2.5E-23 159.3 34.0 301 113-459 59-368 (368)
144 3s97_C Contactin-1; carbonic a 99.9 9.5E-22 3.3E-26 162.1 13.5 178 61-242 13-200 (201)
145 1f2q_A High affinity immunoglo 99.9 1.4E-21 4.6E-26 157.2 14.0 169 54-243 2-171 (176)
146 1nbq_A JAM, junctional adhesio 99.9 5.8E-22 2E-26 164.5 11.9 174 56-234 4-198 (209)
147 2ifg_A High affinity nerve gro 99.9 2.7E-23 9.4E-28 186.3 4.0 198 29-243 136-345 (347)
148 1igt_B IGG2A intact antibody - 99.9 7.8E-22 2.7E-26 183.4 13.9 206 18-230 184-432 (444)
149 3jz7_A MCAR, CAR, coxsackievir 99.9 2.7E-21 9.2E-26 161.1 15.8 177 61-242 5-211 (214)
150 2x1w_L Vascular endothelial gr 99.9 8.1E-21 2.8E-25 157.7 16.6 174 62-243 13-207 (213)
151 2iep_A Muscle-specific kinase 99.9 3.1E-21 1E-25 157.8 13.8 145 4-152 47-192 (192)
152 1epf_A NCAM, protein (neural c 99.9 6E-21 2E-25 155.9 14.7 142 5-147 45-190 (191)
153 3ry4_A Low affinity immunoglob 99.9 1.9E-20 6.5E-25 149.7 16.3 164 57-241 5-169 (170)
154 2fbo_J V1V2;, variable region- 99.9 2.1E-20 7.3E-25 159.7 17.6 174 62-239 8-248 (250)
155 3r4d_A CEA-related cell adhesi 99.9 5.2E-20 1.8E-24 152.5 19.4 174 60-242 3-199 (208)
156 2wqr_A IG epsilon chain C regi 99.9 1.9E-21 6.4E-26 172.7 11.2 264 56-327 7-309 (323)
157 3r8q_A Fibronectin; heparin, F 99.9 7.6E-19 2.6E-23 153.4 27.3 209 207-452 74-284 (290)
158 2d9q_B Granulocyte colony-stim 99.9 2.1E-19 7.3E-24 158.5 23.8 275 62-344 6-311 (313)
159 1n26_A IL-6 receptor alpha cha 99.8 1.5E-18 5.1E-23 153.8 28.9 271 59-341 9-298 (325)
160 1cd9_B G-CSF-R, protein (G-CSF 99.8 7.2E-20 2.4E-24 152.2 18.7 189 244-460 3-212 (215)
161 3n06_B PRL-R, prolactin recept 99.8 1.4E-19 4.9E-24 149.7 20.4 187 244-460 2-203 (210)
162 1p6f_A NKP46, natural cytotoxi 99.8 1.1E-20 3.9E-25 159.1 13.8 180 55-244 6-192 (242)
163 3b5h_A Cervical EMMPRIN, HAB18 99.8 1.3E-19 4.6E-24 146.8 19.6 162 66-242 8-182 (184)
164 4fa8_A Secreted protein BARF1; 99.8 6E-21 2E-25 156.0 11.6 128 10-139 58-193 (203)
165 1zlg_A Anosmin 1; insulin-like 99.8 2.3E-19 7.7E-24 174.7 24.4 218 217-459 133-373 (680)
166 1zlg_A Anosmin 1; insulin-like 99.8 2.2E-17 7.4E-22 160.8 37.2 329 112-460 223-630 (680)
167 3t1w_A Four-domain fibronectin 99.8 7.7E-18 2.6E-22 152.9 31.9 294 112-453 59-361 (375)
168 1hzh_H IGG, immunoglobulin hea 99.8 8.3E-21 2.8E-25 177.1 11.6 207 19-232 195-443 (457)
169 1hng_A CD2; T lymphocyte adhes 99.8 1.1E-20 3.6E-25 151.4 10.4 158 66-239 6-172 (176)
170 1iga_A IGA1; immunoglobulin; N 99.8 1.2E-19 4.2E-24 169.9 19.0 208 19-232 191-443 (475)
171 3d85_D IL-12B, interleukin-12 99.8 5.2E-19 1.8E-23 153.8 21.4 247 163-457 17-303 (306)
172 3bp6_B Programmed cell death 1 99.8 4.2E-20 1.4E-24 152.2 13.5 173 62-243 8-193 (202)
173 2gee_A Hypothetical protein; f 99.8 4.7E-19 1.6E-23 145.6 19.5 173 248-454 25-199 (203)
174 1za6_B IGG heavy chain; immuno 99.8 4.1E-19 1.4E-23 159.0 20.8 165 62-234 6-208 (344)
175 2v5t_A NCAM2, N-CAM 2, neural 99.8 7.2E-20 2.5E-24 149.2 13.7 138 8-148 47-188 (189)
176 2yd1_A Tyrosine-protein phosph 99.8 1.6E-19 5.5E-24 149.9 15.8 143 5-151 47-201 (212)
177 2wv3_A Neuroplastin; igcam, me 99.8 1.5E-19 5.1E-24 147.3 15.3 127 18-147 56-189 (190)
178 2ny1_B T-cell surface glycopro 99.8 3.1E-19 1E-23 144.6 16.8 159 65-244 4-180 (184)
179 1vca_A VCAM-D1,2, human vascul 99.8 1.5E-19 5E-24 148.4 14.8 171 61-243 5-197 (202)
180 3mj6_A Junctional adhesion mol 99.8 3.5E-19 1.2E-23 153.8 17.8 181 58-245 7-239 (268)
181 3r4d_A CEA-related cell adhesi 99.8 1.2E-19 4.2E-24 150.3 14.1 140 8-154 61-204 (208)
182 1tdq_A Tenascin-R; extracellul 99.8 1.6E-17 5.5E-22 144.5 27.7 207 207-454 68-279 (283)
183 1jbj_A CD3 epsilon and gamma e 99.8 8E-20 2.7E-24 147.9 11.7 147 67-233 10-179 (186)
184 1igy_B IGG1 intact antibody MA 99.8 3.2E-21 1.1E-25 178.7 3.8 208 18-232 180-424 (434)
185 2ha1_A Fibronectin; beta sandw 99.8 1.1E-18 3.7E-23 143.4 18.4 179 248-459 2-201 (201)
186 3rbs_A Myomesin-1; immunoglobu 99.8 1.2E-19 4E-24 149.3 12.4 136 2-144 40-203 (207)
187 2x1w_L Vascular endothelial gr 99.8 1.6E-19 5.5E-24 149.9 13.4 150 3-154 49-211 (213)
188 2if7_A SLAM family member 6; N 99.8 3.7E-19 1.3E-23 144.9 14.9 160 62-236 4-185 (193)
189 2c5d_C AXL oncogene, tyrosine- 99.8 6.1E-19 2.1E-23 144.3 15.6 124 18-148 68-191 (195)
190 3t1w_A Four-domain fibronectin 99.8 2.8E-17 9.5E-22 149.2 28.1 213 206-454 58-272 (375)
191 1rhf_A Tyrosine-protein kinase 99.8 4.1E-19 1.4E-23 143.7 14.3 134 6-148 43-181 (182)
192 3mj8_L Stimulatory hamster ant 99.8 2.5E-19 8.4E-24 149.0 13.1 174 58-237 3-207 (213)
193 2r15_A Myomesin-1; sarcomeric 99.8 3.5E-19 1.2E-23 148.0 14.0 139 4-146 42-208 (212)
194 3jz7_A MCAR, CAR, coxsackievir 99.8 1.1E-19 3.8E-24 151.3 10.9 138 7-151 67-213 (214)
195 3sbw_C Programmed cell death 1 99.8 8.2E-19 2.8E-23 146.8 16.3 175 62-243 7-211 (222)
196 2a38_A Titin; Z1Z2, structural 99.8 5.3E-19 1.8E-23 144.6 14.7 122 19-144 64-191 (194)
197 1nkr_A P58-CL42 KIR; inhibitor 99.8 1.8E-18 6.3E-23 142.0 17.8 164 55-229 7-183 (201)
198 2yd6_A PTPRD protein; hydrolas 99.8 1.1E-18 3.7E-23 144.9 16.2 132 19-153 64-207 (212)
199 4f80_A Butyrophilin subfamily 99.8 4.8E-19 1.6E-23 148.6 14.2 172 65-243 13-213 (226)
200 4frw_A Poliovirus receptor-rel 99.8 9.8E-19 3.3E-23 145.9 15.7 177 62-242 5-210 (218)
201 1qr4_A Protein (tenascin); fib 99.8 1.1E-17 3.8E-22 135.5 21.4 175 245-459 6-182 (186)
202 4go6_B HCF C-terminal chain 1; 99.8 4.1E-19 1.4E-23 148.7 13.0 169 276-458 22-198 (232)
203 3d9a_L Light chain of hyhel10 99.8 1.2E-18 4.1E-23 144.8 14.5 169 59-233 4-203 (213)
204 2dtg_E Insulin receptor; IR ec 99.8 1.5E-19 5.3E-24 180.6 10.6 228 207-460 549-887 (897)
205 1f97_A Junction adhesion molec 99.8 1.3E-18 4.4E-23 144.6 14.3 142 7-150 55-207 (212)
206 2j8h_A Titin, connectin; cardi 99.8 9.6E-19 3.3E-23 143.5 13.3 138 4-145 44-194 (197)
207 1hnf_A CD2; T lymphocyte adhes 99.8 3.2E-18 1.1E-22 137.0 15.8 161 63-239 6-177 (182)
208 4i0k_A CD276 antigen; immunogl 99.8 4.7E-19 1.6E-23 148.3 11.5 173 65-244 4-207 (222)
209 1hng_A CD2; T lymphocyte adhes 99.8 3.4E-19 1.2E-23 142.7 9.8 120 7-142 50-170 (176)
210 3e0g_A Leukemia inhibitory fac 99.8 4.5E-18 1.5E-22 155.0 18.3 264 155-460 202-480 (483)
211 3lcy_A Titin; A-BAND, IG tande 99.8 1.5E-18 5.1E-23 142.4 13.9 139 4-148 46-194 (197)
212 3nl4_L Antigen binding fragmen 99.8 2.6E-18 9E-23 142.7 15.4 164 58-227 3-198 (213)
213 2zg1_A Sialic acid-binding IG- 99.8 8E-18 2.8E-22 139.9 17.7 168 62-238 6-208 (214)
214 2pet_A Lutheran blood group gl 99.8 1.5E-18 5E-23 146.3 12.7 163 62-229 6-211 (231)
215 1fnf_A Fibronectin; RGD, extra 99.8 1.5E-16 5E-21 144.1 26.7 209 207-453 58-269 (368)
216 1lk3_L 9D7 light chain; antige 99.8 4.8E-18 1.7E-22 140.7 15.4 164 63-232 7-201 (210)
217 2v9r_A Roundabout homolog 1; p 99.8 1.7E-18 5.7E-23 143.9 12.3 136 20-159 74-211 (212)
218 1nqb_A Single-chain antibody f 99.8 2.5E-17 8.6E-22 140.6 19.8 177 62-242 6-232 (256)
219 1b6u_A KIR2DL3, P58 killer cel 99.8 3.6E-18 1.2E-22 144.9 14.4 178 55-243 6-201 (257)
220 2ed9_A Netrin receptor DCC; tu 99.8 1.1E-18 3.8E-23 131.0 9.9 117 317-460 2-122 (124)
221 3r8q_A Fibronectin; heparin, F 99.8 4.2E-17 1.4E-21 142.3 21.4 174 243-452 18-194 (290)
222 2va4_A NCAM2, N-CAM 2, neural 99.8 5.8E-18 2E-22 138.2 14.9 139 3-144 42-189 (192)
223 3mtr_A N-CAM-1, NCAM-1, neural 99.8 1.3E-17 4.6E-22 138.6 17.4 181 55-242 18-208 (215)
224 2p1y_A Bispecific alpha/beta T 99.8 2.1E-17 7.1E-22 139.9 18.7 166 59-230 3-222 (238)
225 1f3r_B FV antibody fragment; I 99.8 2.3E-17 7.8E-22 141.1 18.7 176 63-242 7-244 (257)
226 1fnl_A Low affinity immunoglob 99.8 6.6E-18 2.3E-22 135.4 14.3 121 18-150 54-174 (175)
227 3bpo_C Interleukin-13 receptor 99.8 1E-16 3.6E-21 141.2 23.2 234 209-460 55-311 (314)
228 1sy6_A T-cell surface glycopro 99.8 4E-18 1.4E-22 139.9 13.0 151 68-240 15-201 (204)
229 3s96_B 3B5H10 FAB light chain; 99.8 4.8E-18 1.6E-22 141.7 13.6 173 58-236 3-213 (218)
230 4fmk_A Poliovirus receptor-rel 99.8 4.9E-18 1.7E-22 142.4 13.7 173 65-241 10-215 (225)
231 1vca_A VCAM-D1,2, human vascul 99.8 1.9E-18 6.5E-23 141.7 10.7 134 18-153 54-200 (202)
232 3s98_A Interferon alpha/beta r 99.8 1.3E-16 4.4E-21 139.4 22.9 220 214-460 68-301 (306)
233 3uzq_A Anti-dengue MAB 4E11; d 99.8 2.6E-17 9E-22 140.5 18.2 180 60-244 5-245 (253)
234 2ghw_B Anti-SARS SCFV antibody 99.8 7.2E-17 2.4E-21 137.3 20.7 176 63-242 9-241 (247)
235 1ugn_A LIR1, leukocyte immunog 99.8 6.9E-18 2.4E-22 138.3 13.4 130 17-149 57-197 (198)
236 3sgj_C Human FCG3A receptor; r 99.8 5.3E-18 1.8E-22 139.3 12.7 123 18-152 54-176 (204)
237 3gkz_A Anti-methamphetamine si 99.8 1E-16 3.5E-21 137.2 20.6 184 61-248 13-254 (257)
238 3s97_C Contactin-1; carbonic a 99.8 9.5E-18 3.2E-22 138.0 13.7 133 10-146 58-199 (201)
239 1q0x_L FAB 9B1, light chain; a 99.8 1.5E-17 5E-22 138.1 14.9 165 63-233 7-205 (212)
240 3tv3_L PGT128 light chain, IG 99.8 3.7E-18 1.3E-22 141.6 11.1 169 60-237 5-205 (211)
241 1dr9_A B7-1 (CD80), T lymphocy 99.8 2.2E-17 7.6E-22 135.7 15.7 165 66-238 4-196 (201)
242 3k0w_A Mucosa-associated lymph 99.8 1.1E-17 3.8E-22 139.3 14.0 125 18-152 65-204 (218)
243 3auv_A SC-DSFV derived from th 99.8 4.5E-17 1.5E-21 140.9 18.2 167 57-229 13-235 (276)
244 1nbq_A JAM, junctional adhesio 99.8 1.1E-18 3.6E-23 144.7 7.6 141 7-149 58-208 (209)
245 3r06_A Anti-mouse CD3epsilon a 99.8 2.4E-17 8.1E-22 136.9 15.6 169 57-232 2-202 (213)
246 1f2q_A High affinity immunoglo 99.7 8E-18 2.7E-22 135.1 12.0 124 18-153 51-174 (176)
247 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 4.2E-17 1.5E-21 139.4 17.1 170 58-233 5-236 (256)
248 3bp6_B Programmed cell death 1 99.7 8.3E-18 2.8E-22 138.4 12.2 138 2-146 45-191 (202)
249 3eow_R Poliovirus receptor; im 99.7 3.2E-18 1.1E-22 143.1 9.7 173 63-241 6-210 (221)
250 3umt_A SCFV heavy chain and li 99.7 9.3E-17 3.2E-21 137.3 18.9 177 63-243 9-245 (256)
251 2znx_A SCFV; fluorotryptohpan, 99.7 4.1E-17 1.4E-21 138.1 16.5 166 58-229 3-222 (242)
252 3pv7_A B7-H6, IG-like domain-c 99.7 1E-17 3.6E-22 142.6 12.7 173 62-241 9-224 (248)
253 1zvo_C Myeloma immunoglobulin 99.7 1E-16 3.6E-21 151.0 20.7 161 63-232 304-492 (512)
254 3qib_D 2B4 beta chain; IG doma 99.7 7.6E-18 2.6E-22 145.3 11.9 195 25-232 3-244 (270)
255 2d3v_A Leukocyte immunoglobuli 99.7 3.2E-18 1.1E-22 140.0 8.8 116 18-136 58-180 (196)
256 1c1e_H Catalytic antibody 1E9 99.7 1.5E-17 5.3E-22 138.7 13.0 170 62-237 6-214 (219)
257 3sbw_C Programmed cell death 1 99.7 2E-17 7E-22 138.3 13.6 142 7-153 63-214 (222)
258 1wfo_A Sidekick 2; FN3, cell a 99.7 6E-18 2E-22 128.1 9.3 118 319-460 3-122 (130)
259 2dru_A Chimera of CD48 antigen 99.7 2.5E-17 8.5E-22 132.1 13.3 155 64-237 7-175 (180)
260 3esu_F Antibody 14B7* light ch 99.7 1E-16 3.5E-21 136.7 18.0 165 58-228 6-231 (250)
261 1b6u_A KIR2DL3, P58 killer cel 99.7 1.1E-17 3.6E-22 142.0 11.7 168 17-193 61-240 (257)
262 2fbo_J V1V2;, variable region- 99.7 1.1E-17 3.8E-22 142.7 11.9 132 6-138 76-239 (250)
263 3sob_L Antibody light chain; b 99.7 2.9E-17 9.8E-22 138.9 14.2 172 57-233 25-226 (237)
264 1qok_A MFE-23 recombinant anti 99.7 1.9E-16 6.5E-21 137.3 19.6 178 61-243 31-268 (282)
265 3p2t_A Leukocyte immunoglobuli 99.7 8.7E-18 3E-22 137.5 10.2 128 18-148 58-194 (196)
266 1moe_A Anti-CEA MAB T84.66; an 99.7 1E-16 3.4E-21 135.8 17.1 166 58-228 3-219 (240)
267 4f80_A Butyrophilin subfamily 99.7 1.9E-17 6.5E-22 138.8 12.5 139 8-151 67-214 (226)
268 2xzc_L FAB A.17 light chain; i 99.7 3.2E-17 1.1E-21 136.4 13.5 166 63-233 7-205 (216)
269 3b5h_A Cervical EMMPRIN, HAB18 99.7 7E-17 2.4E-21 130.7 15.1 122 19-148 52-181 (184)
270 1pz5_B Heavy chain of FAB (SYA 99.7 8.2E-17 2.8E-21 134.3 15.9 171 62-237 6-215 (220)
271 2vr9_A Roundabout 1, ROBO; imm 99.7 1.5E-17 5.2E-22 138.5 11.4 122 21-143 72-201 (217)
272 1hnf_A CD2; T lymphocyte adhes 99.7 3.5E-17 1.2E-21 130.9 13.0 116 7-141 55-174 (182)
273 2gi7_A GPVI protein; IG-like d 99.7 1.5E-17 5.1E-22 134.4 10.9 126 17-148 51-183 (184)
274 3mj8_L Stimulatory hamster ant 99.7 9E-18 3.1E-22 139.5 9.7 130 8-137 57-202 (213)
275 2rgs_A I, IG gamma-2B heavy ch 99.7 6.8E-18 2.3E-22 140.4 8.9 173 56-232 9-205 (218)
276 1uct_A Immunoglobulin alpha FC 99.7 1.8E-17 6.3E-22 137.4 11.4 128 19-151 65-199 (218)
277 2if7_A SLAM family member 6; N 99.7 4E-17 1.4E-21 132.9 13.2 117 9-138 61-182 (193)
278 1lk3_L 9D7 light chain; antige 99.7 1.8E-17 6.1E-22 137.3 11.1 131 8-138 57-202 (210)
279 1mq8_A ICAM-1, intercellular a 99.7 3.9E-18 1.3E-22 146.1 7.2 214 19-243 51-282 (291)
280 1tdq_A Tenascin-R; extracellul 99.7 7.8E-16 2.7E-20 133.8 22.0 174 244-452 13-189 (283)
281 1oll_A NK receptor; immune sys 99.7 1.3E-17 4.4E-22 135.3 9.6 126 18-149 57-187 (188)
282 2ifg_A High affinity nerve gro 99.7 4.9E-18 1.7E-22 152.1 7.8 131 14-152 208-347 (347)
283 1ccz_A Protein (CD58); LFA-3, 99.7 5.8E-17 2E-21 128.7 12.9 153 65-239 4-167 (171)
284 3grw_A Fibroblast growth facto 99.7 9.5E-17 3.2E-21 136.1 15.1 136 17-156 71-224 (241)
285 3d9a_L Light chain of hyhel10 99.7 1.6E-17 5.5E-22 138.0 10.1 130 9-138 59-203 (213)
286 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 8E-17 2.7E-21 134.6 14.3 169 63-237 7-217 (222)
287 3juy_B 3B3 single chain varian 99.7 4.7E-16 1.6E-20 133.0 19.2 171 56-230 6-243 (256)
288 2vol_A Murine IGG FC; FC, zinc 99.7 1.1E-17 3.8E-22 137.9 8.7 165 62-231 8-196 (207)
289 1svz_A Immunoglobulin;, single 99.7 1.6E-16 5.5E-21 135.1 16.2 166 59-229 4-228 (247)
290 3l5i_A Interleukin-6 receptor 99.7 1.1E-16 3.7E-21 139.8 15.4 181 245-459 3-192 (290)
291 3bkj_L WO2 IGG2A FAB fragment 99.7 8E-17 2.7E-21 137.4 14.3 171 57-232 35-240 (252)
292 1nfd_E H57 FAB; complex (immun 99.7 5.9E-18 2E-22 140.4 6.9 165 63-232 6-201 (212)
293 1v5j_A KIAA1355 protein, RSGI 99.7 9E-18 3.1E-22 120.0 6.9 93 342-460 7-100 (108)
294 2ny1_B T-cell surface glycopro 99.7 5.8E-17 2E-21 131.1 12.6 125 8-153 52-182 (184)
295 4i0k_A CD276 antigen; immunogl 99.7 3.4E-17 1.2E-21 136.9 11.2 143 7-155 55-211 (222)
296 3d9a_H Heavy chain of hyhel10 99.7 9.1E-17 3.1E-21 133.0 13.6 168 62-235 6-206 (210)
297 2dtg_E Insulin receptor; IR ec 99.7 5.6E-17 1.9E-21 162.2 14.6 129 255-383 479-636 (897)
298 2dbj_A Proto-oncogene tyrosine 99.7 6.9E-17 2.4E-21 120.8 11.5 111 326-460 1-116 (124)
299 3s98_A Interferon alpha/beta r 99.7 1.4E-16 4.9E-21 139.1 15.3 182 246-459 4-197 (306)
300 2edx_A Protein tyrosine phosph 99.7 1.2E-16 4E-21 121.8 12.9 112 326-460 1-116 (134)
301 1nqb_A Single-chain antibody f 99.7 7.3E-17 2.5E-21 137.7 12.8 128 8-135 64-219 (256)
302 3se4_A Interferon alpha/beta r 99.7 2E-16 6.7E-21 145.0 16.5 223 204-460 160-408 (414)
303 3ojm_B Fibroblast growth facto 99.7 1.2E-16 4E-21 134.6 13.9 132 18-153 76-224 (231)
304 1x5f_A Neogenin; RGM binding, 99.7 1.1E-16 3.7E-21 119.3 11.9 109 327-460 2-112 (120)
305 2xzc_L FAB A.17 light chain; i 99.7 4.6E-17 1.6E-21 135.5 10.9 131 8-138 59-205 (216)
306 2zg1_A Sialic acid-binding IG- 99.7 9.1E-17 3.1E-21 133.5 12.2 134 7-148 66-213 (214)
307 1jbj_A CD3 epsilon and gamma e 99.7 1.7E-17 5.7E-22 134.2 7.4 111 17-138 43-179 (186)
308 1x3d_A Fibronectin type-III do 99.7 7.6E-17 2.6E-21 119.6 10.4 109 326-460 1-110 (118)
309 2j6e_L IGM, FAB light chain; a 99.7 5.2E-17 1.8E-21 137.0 10.6 167 63-234 26-226 (234)
310 3uzq_A Anti-dengue MAB 4E11; d 99.7 1E-16 3.5E-21 136.8 12.5 144 8-152 65-246 (253)
311 3mj6_A Junctional adhesion mol 99.7 1.9E-16 6.5E-21 136.6 14.2 151 9-168 70-255 (268)
312 2ed7_A Netrin receptor DCC; tu 99.7 1.9E-16 6.5E-21 117.8 12.2 103 333-460 8-111 (119)
313 4dzb_B Vbeta2 (MAIT T cell rec 99.7 1.3E-16 4.6E-21 135.6 12.9 172 58-234 3-222 (246)
314 4fmk_A Poliovirus receptor-rel 99.7 9.6E-17 3.3E-21 134.4 11.8 133 17-151 82-220 (225)
315 3omz_A Human vdelta1 gamma del 99.7 2.5E-16 8.6E-21 134.9 14.5 168 57-228 3-230 (259)
316 2gjj_A A21 single-chain antibo 99.7 5.2E-16 1.8E-20 133.0 16.4 168 57-229 6-239 (264)
317 2pet_A Lutheran blood group gl 99.7 8.9E-17 3E-21 135.3 11.4 120 14-134 73-211 (231)
318 1mju_H Immunoglobulin MS6-12; 99.7 2.6E-16 9E-21 131.7 14.0 174 62-242 6-216 (227)
319 3pv7_A B7-H6, IG-like domain-c 99.7 9.2E-17 3.2E-21 136.7 11.3 133 19-154 83-229 (248)
320 2crm_A Fibronectin type-III do 99.7 1.7E-16 5.6E-21 118.1 11.2 109 326-460 1-112 (120)
321 3se4_A Interferon alpha/beta r 99.7 2.7E-15 9.4E-20 137.4 21.7 221 212-459 70-304 (414)
322 3fku_X Neutralizing antibody F 99.7 7.7E-16 2.6E-20 133.2 17.1 182 63-249 7-256 (280)
323 1q0x_L FAB 9B1, light chain; a 99.7 8.6E-17 3E-21 133.4 10.3 130 8-137 60-204 (212)
324 3sob_L Antibody light chain; b 99.7 9.8E-17 3.3E-21 135.6 10.8 134 7-140 80-228 (237)
325 1axi_B HGHBP, growth hormone r 99.7 7E-16 2.4E-20 129.0 15.8 185 244-460 28-234 (236)
326 1dee_B IGM RF 2A2; FAB-IBP com 99.7 9.5E-16 3.3E-20 127.9 16.6 171 63-236 7-220 (223)
327 3tv3_L PGT128 light chain, IG 99.7 3.6E-17 1.2E-21 135.6 7.9 130 8-137 55-200 (211)
328 3r06_A Anti-mouse CD3epsilon a 99.7 6E-17 2E-21 134.5 9.2 131 8-138 58-203 (213)
329 2q7n_A Leukemia inhibitory fac 99.7 8.7E-16 3E-20 141.1 17.6 265 56-340 203-486 (488)
330 3lqm_A Interleukin-10 receptor 99.7 2.4E-15 8.3E-20 122.5 18.1 178 248-460 4-194 (201)
331 3umt_A SCFV heavy chain and li 99.7 2.6E-16 9E-21 134.5 12.9 142 8-151 66-246 (256)
332 1x5h_A Neogenin; RGM binding, 99.7 1.3E-16 4.3E-21 121.2 9.7 110 326-460 1-114 (132)
333 2ee2_A Contactin-1; neural cel 99.7 3.4E-16 1.2E-20 116.2 11.9 109 326-460 1-111 (119)
334 3ux9_B SCFV antibody; five hel 99.7 3.9E-16 1.3E-20 133.5 13.9 163 62-229 8-235 (256)
335 3ry4_A Low affinity immunoglob 99.7 4.1E-16 1.4E-20 124.4 13.1 127 10-148 35-169 (170)
336 3nl4_L Antigen binding fragmen 99.7 1.5E-16 5E-21 132.1 10.9 124 8-132 58-198 (213)
337 3bqu_C 3H6 FAB light chain; be 99.7 1.9E-17 6.6E-22 139.6 5.6 170 57-232 24-224 (233)
338 2c1o_A IGK-C protein; FAB frag 99.7 1.5E-16 5.3E-21 135.9 11.1 131 8-138 100-245 (254)
339 4frw_A Poliovirus receptor-rel 99.7 2.5E-16 8.6E-21 131.2 11.9 132 18-150 79-213 (218)
340 1f3r_B FV antibody fragment; I 99.7 3.4E-16 1.2E-20 133.8 12.6 127 8-135 63-232 (257)
341 1gsm_A Madcam-1, mucosal addre 99.7 3.6E-15 1.2E-19 120.3 17.9 153 66-233 17-195 (210)
342 2fbj_H IGA-kappa J539 FAB (hea 99.7 2.3E-15 7.8E-20 125.3 17.3 167 62-234 6-212 (220)
343 1dr9_A B7-1 (CD80), T lymphocy 99.7 6.9E-16 2.4E-20 126.7 13.9 125 8-138 53-191 (201)
344 1wj3_A KIAA1496 protein; beta 99.7 5.6E-16 1.9E-20 114.0 11.7 106 326-460 1-109 (117)
345 3bkj_L WO2 IGG2A FAB fragment 99.7 9.3E-17 3.2E-21 137.0 8.6 129 9-137 97-240 (252)
346 1x9q_A SCFV, 4M5.3 anti-fluore 99.7 1E-15 3.5E-20 131.7 15.1 169 56-229 15-254 (268)
347 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 1.6E-16 5.5E-21 132.7 9.7 131 8-139 66-214 (222)
348 1p6f_A NKP46, natural cytotoxi 99.7 2.2E-16 7.4E-21 132.9 10.5 128 18-151 60-192 (242)
349 3knb_A Titin; IG-like, titin, 99.7 3.3E-16 1.1E-20 111.7 9.9 91 55-146 4-97 (100)
350 1hxm_B Gamma-delta T-cell rece 99.7 1.6E-15 5.4E-20 128.3 15.8 180 58-241 3-227 (242)
351 1l6x_A Immunoglobulin gamma-1 99.7 1.4E-16 4.7E-21 131.4 9.0 158 69-231 16-196 (207)
352 3s96_B 3B5H10 FAB light chain; 99.7 9.4E-17 3.2E-21 133.8 8.1 131 8-138 62-210 (218)
353 3auv_A SC-DSFV derived from th 99.7 7.5E-16 2.6E-20 133.1 14.0 127 8-134 69-235 (276)
354 3knb_B Obscurin-like protein 1 99.7 3.6E-16 1.2E-20 112.9 9.9 93 55-152 12-107 (107)
355 2e7h_A Ephrin type-B receptor 99.7 6.1E-16 2.1E-20 112.7 11.2 98 338-460 3-101 (109)
356 1x5i_A Neogenin; RGM binding, 99.7 4.7E-16 1.6E-20 116.3 10.7 107 323-456 2-114 (126)
357 2gki_A Nuclease; anti-DNA anti 99.7 2.7E-15 9.1E-20 130.6 17.0 165 62-230 28-258 (291)
358 3shs_A HOC head outer capsid p 99.7 5E-14 1.7E-18 114.3 22.7 158 58-232 4-170 (304)
359 1c1e_H Catalytic antibody 1E9 99.7 2.3E-16 7.8E-21 131.5 9.7 130 8-138 64-210 (219)
360 2ghw_B Anti-SARS SCFV antibody 99.7 1E-15 3.6E-20 130.1 13.8 127 8-135 66-228 (247)
361 3juy_B 3B3 single chain varian 99.7 8.2E-16 2.8E-20 131.4 13.1 128 8-135 70-243 (256)
362 3nfj_J T cell receptor beta ch 99.7 1E-15 3.5E-20 130.0 13.5 170 59-233 4-220 (245)
363 3esu_F Antibody 14B7* light ch 99.7 1.1E-15 3.7E-20 130.3 13.5 126 8-133 61-231 (250)
364 4acp_A IG gamma-1 chain C regi 99.7 1.2E-16 4.2E-21 133.8 7.5 191 31-230 1-216 (240)
365 1op3_H FAB 2G12, heavy chain; 99.7 1.6E-15 5.4E-20 126.8 14.3 165 63-233 7-215 (225)
366 1wis_A KIAA1514 protein; FNIII 99.7 2.8E-16 9.7E-21 117.4 8.7 109 330-460 5-117 (124)
367 2yrz_A Integrin beta-4; GP150, 99.7 4.2E-16 1.4E-20 115.6 9.4 108 326-459 1-110 (118)
368 1x5g_A Neogenin; RGM binding, 99.7 1.2E-15 3.9E-20 112.9 11.8 104 329-460 2-108 (116)
369 3pl6_D MBP peptide / T-cell re 99.7 1.1E-15 3.6E-20 131.8 13.3 171 57-232 27-241 (268)
370 2haz_A N-CAM 1, neural cell ad 99.7 4.1E-16 1.4E-20 112.7 9.0 97 340-460 4-103 (105)
371 1x4z_A Biregional cell adhesio 99.7 9.7E-16 3.3E-20 114.1 11.3 100 336-459 11-113 (121)
372 3v6o_A Leptin receptor; recept 99.7 1.4E-14 5E-19 118.6 19.3 181 248-455 3-199 (206)
373 1x4x_A Fibronectin type-III do 99.7 8.9E-16 3E-20 111.1 10.7 93 339-460 4-98 (106)
374 3eow_R Poliovirus receptor; im 99.7 1.9E-16 6.3E-21 132.3 8.1 128 9-138 61-202 (221)
375 2djs_A Ephrin type-B receptor 99.7 4.6E-16 1.6E-20 113.3 9.2 97 338-460 3-100 (108)
376 3n1f_C Cell adhesion molecule- 99.7 1.2E-15 4.1E-20 109.1 11.1 94 344-460 6-102 (102)
377 1sy6_A T-cell surface glycopro 99.6 1.3E-16 4.6E-21 130.8 6.9 123 17-148 48-202 (204)
378 1nkr_A P58-CL42 KIR; inhibitor 99.6 1.5E-15 5.1E-20 124.6 13.2 112 17-134 62-183 (201)
379 2dru_A Chimera of CD48 antigen 99.6 7.9E-16 2.7E-20 123.3 11.1 114 9-140 59-173 (180)
380 1moe_A Anti-CEA MAB T84.66; an 99.6 1.1E-15 3.6E-20 129.5 12.5 126 8-133 62-219 (240)
381 3d9a_H Heavy chain of hyhel10 99.6 4.6E-16 1.6E-20 128.7 10.0 129 8-139 63-205 (210)
382 2dlh_A Receptor-type tyrosine- 99.6 4.1E-16 1.4E-20 116.4 8.4 111 326-460 1-113 (121)
383 1mju_H Immunoglobulin MS6-12; 99.6 7.6E-16 2.6E-20 128.9 11.0 142 8-152 64-219 (227)
384 1i1c_A IGG2A, IG gamma-2A chai 99.6 2.5E-16 8.7E-21 132.4 8.0 160 68-232 29-211 (239)
385 2p1y_A Bispecific alpha/beta T 99.6 1.3E-15 4.3E-20 128.8 12.3 127 8-135 59-222 (238)
386 1wfn_A Sidekick 2; FN3, cell a 99.6 5.6E-16 1.9E-20 115.1 8.9 106 326-456 1-107 (119)
387 1nfd_E H57 FAB; complex (immun 99.6 1.2E-16 4.1E-21 132.5 5.7 130 9-138 57-202 (212)
388 1x5l_A Ephrin type-A receptor 99.6 8.1E-16 2.8E-20 112.7 9.4 99 336-460 4-103 (111)
389 3bqu_C 3H6 FAB light chain; be 99.6 7.2E-17 2.5E-21 136.0 4.2 129 9-137 81-224 (233)
390 3nl4_H Antigen binding fragmen 99.6 1.9E-15 6.5E-20 125.5 12.7 171 62-238 5-209 (215)
391 1x5z_A Receptor-type tyrosine- 99.6 7E-16 2.4E-20 113.9 8.8 106 326-460 1-107 (115)
392 2kbg_A N-CAM 2, neural cell ad 99.6 5.1E-16 1.7E-20 112.0 7.7 92 342-459 8-99 (114)
393 4ei6_B Vbeta16 XV19 type II na 99.6 3.9E-15 1.3E-19 126.4 14.4 169 58-232 4-219 (245)
394 3gkz_A Anti-methamphetamine si 99.6 2.3E-15 7.8E-20 128.8 12.8 129 7-135 70-235 (257)
395 1uey_A KIAA0343 protein; immun 99.6 1.3E-15 4.5E-20 114.5 9.9 109 327-460 2-112 (127)
396 1dn0_B IGM-kappa cold agglutin 99.6 8.3E-15 2.8E-19 122.9 15.9 176 62-241 6-225 (232)
397 3d85_D IL-12B, interleukin-12 99.6 7.8E-14 2.7E-18 121.2 22.5 248 62-336 12-303 (306)
398 3bae_H WO2 IGG2A FAB fragment 99.6 4.4E-15 1.5E-19 124.4 14.0 168 63-236 7-219 (228)
399 3m8o_H Immunoglobulin A1 heavy 99.6 1.4E-14 5E-19 120.7 17.1 164 63-232 7-212 (221)
400 2znx_A SCFV; fluorotryptohpan, 99.6 1.9E-15 6.4E-20 127.9 11.7 127 8-134 58-222 (242)
401 2w59_A IGY FCU3-4; immunoglobu 99.6 5E-16 1.7E-20 130.2 8.1 164 61-232 18-217 (231)
402 3nl4_H Antigen binding fragmen 99.6 1E-15 3.5E-20 127.1 9.8 129 8-138 62-204 (215)
403 1ccz_A Protein (CD58); LFA-3, 99.6 1E-15 3.6E-20 121.5 9.4 111 8-140 49-163 (171)
404 1pz5_B Heavy chain of FAB (SYA 99.6 1.3E-15 4.4E-20 127.1 10.3 129 9-138 67-211 (220)
405 2fbj_H IGA-kappa J539 FAB (hea 99.6 2.5E-15 8.5E-20 125.1 12.0 129 8-138 64-211 (220)
406 2j6e_L IGM, FAB light chain; a 99.6 3.2E-16 1.1E-20 132.1 6.5 131 8-138 78-225 (234)
407 1qok_A MFE-23 recombinant anti 99.6 5.4E-15 1.9E-19 128.1 14.4 126 8-135 90-254 (282)
408 2dm4_A Sortilin-related recept 99.6 4E-15 1.4E-19 108.3 11.4 92 341-460 6-100 (108)
409 1va9_A DOWN syndrome cell adhe 99.6 2.1E-15 7E-20 112.8 10.1 108 331-460 3-115 (122)
410 2ed8_A Netrin receptor DCC; tu 99.6 3.5E-15 1.2E-19 108.2 11.0 93 340-460 5-98 (106)
411 3q5y_A TCR N15 beta; IG, T cel 99.6 8.1E-15 2.8E-19 124.0 14.6 170 58-232 4-213 (240)
412 3ux9_B SCFV antibody; five hel 99.6 6.3E-15 2.2E-19 126.0 14.1 128 8-135 61-236 (256)
413 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.6 2.8E-15 9.5E-20 128.1 11.8 129 8-138 61-236 (256)
414 1x4y_A Biregional cell adhesio 99.6 3E-15 1E-19 110.1 10.2 97 341-460 7-106 (114)
415 1wf5_A Sidekick 2 protein; FNI 99.6 2.7E-15 9.2E-20 111.9 10.0 107 325-460 3-114 (121)
416 1dee_B IGM RF 2A2; FAB-IBP com 99.6 6.4E-15 2.2E-19 122.9 12.9 131 8-140 64-219 (223)
417 1c5d_H Monoclonal antibody aga 99.6 1.4E-14 4.7E-19 120.1 14.8 169 62-235 6-208 (215)
418 2edd_A Netrin receptor DCC; tu 99.6 6.1E-15 2.1E-19 109.4 11.3 105 330-460 5-115 (123)
419 2wbj_D OB TCR; transmembrane, 99.6 6.4E-15 2.2E-19 127.5 13.1 172 57-233 25-246 (279)
420 1bpv_A Titin, A71, connectin; 99.6 4.5E-15 1.5E-19 107.8 10.1 93 342-459 10-105 (112)
421 1svz_A Immunoglobulin;, single 99.6 6.1E-15 2.1E-19 125.3 12.6 126 9-134 64-228 (247)
422 2xqy_G A13-D6.3 monoclonal ant 99.6 1.7E-14 5.9E-19 122.9 15.3 166 62-232 12-214 (261)
423 1op3_H FAB 2G12, heavy chain; 99.6 2.2E-15 7.5E-20 126.0 9.6 128 8-137 64-214 (225)
424 3bae_H WO2 IGG2A FAB fragment 99.6 3.6E-15 1.2E-19 124.9 10.7 130 8-138 65-216 (228)
425 2ede_A Netrin receptor DCC; tu 99.6 6.1E-15 2.1E-19 108.6 10.6 97 341-460 7-106 (114)
426 1x5y_A Myosin binding protein 99.6 9E-15 3.1E-19 106.9 11.1 91 340-455 6-98 (111)
427 2eo9_A Roundabout homolog 1; b 99.6 6.2E-15 2.1E-19 109.3 10.0 91 55-147 7-97 (118)
428 3liz_H 4C3 monoclonal antibody 99.6 5E-15 1.7E-19 126.1 10.8 175 62-241 6-218 (253)
429 3liz_H 4C3 monoclonal antibody 99.6 2.8E-15 9.6E-20 127.7 9.1 132 7-139 63-211 (253)
430 2e3v_A Neural cell adhesion mo 99.6 6.7E-15 2.3E-19 109.4 9.9 96 340-459 5-103 (122)
431 3m8o_H Immunoglobulin A1 heavy 99.6 1.3E-14 4.3E-19 121.0 12.7 127 8-138 66-213 (221)
432 1dn0_B IGM-kappa cold agglutin 99.6 1.1E-14 3.7E-19 122.2 12.1 135 8-143 63-222 (232)
433 3to4_D NKT vbeta2 (mouse varia 99.6 1.3E-14 4.5E-19 123.6 12.6 167 60-230 5-217 (253)
434 3fku_X Neutralizing antibody F 99.6 7E-15 2.4E-19 127.2 10.9 127 8-135 64-234 (280)
435 1uen_A KIAA0343 protein; immun 99.6 3.8E-15 1.3E-19 111.8 8.0 112 331-460 2-117 (125)
436 2gki_A Nuclease; anti-DNA anti 99.6 6E-15 2.1E-19 128.4 10.4 127 9-135 87-258 (291)
437 2yuw_A Myosin binding protein 99.6 1.7E-14 5.9E-19 105.3 11.2 90 341-455 6-97 (110)
438 1x5a_A Ephrin type-A receptor 99.6 2.7E-14 9.3E-19 103.1 12.1 92 338-460 5-99 (107)
439 1x5x_A Fibronectin type-III do 99.6 1.2E-14 4E-19 105.9 10.2 95 340-460 5-101 (109)
440 3bn9_D E2 FAB heavy chain; ant 99.6 1.6E-14 5.5E-19 122.6 12.4 165 63-232 7-219 (257)
441 2gjj_A A21 single-chain antibo 99.6 1.5E-14 5.2E-19 123.9 12.3 126 9-134 69-239 (264)
442 2crz_A Fibronectin type-III do 99.6 1.3E-14 4.3E-19 105.9 10.0 95 339-460 5-102 (110)
443 3lb6_C IL-13, interleukin-13 r 99.6 2.1E-14 7.3E-19 129.2 13.6 215 213-460 94-334 (380)
444 1gsm_A Madcam-1, mucosal addre 99.6 2.8E-14 9.5E-19 115.2 12.6 128 10-141 50-198 (210)
445 1mq8_A ICAM-1, intercellular a 99.6 5.2E-14 1.8E-18 120.5 15.1 257 60-337 3-281 (291)
446 3pl6_D MBP peptide / T-cell re 99.6 6.7E-15 2.3E-19 126.7 9.5 127 10-138 88-242 (268)
447 1x9q_A SCFV, 4M5.3 anti-fluore 99.6 1.5E-14 5E-19 124.5 11.5 127 8-134 77-254 (268)
448 1x5j_A Neogenin; RGM binding, 99.6 1.9E-14 6.6E-19 104.9 10.1 94 341-460 7-105 (113)
449 1ypz_F T-cell receptor gamma c 99.6 3.3E-14 1.1E-18 119.1 12.9 169 60-233 5-217 (230)
450 2dju_A Receptor-type tyrosine- 99.6 5.1E-14 1.7E-18 102.1 12.1 93 340-460 5-98 (106)
451 3o3u_N Maltose-binding peripla 99.6 2E-14 7E-19 138.2 13.0 166 63-232 373-566 (581)
452 1bec_A 14.3.D T cell antigen r 99.6 7E-14 2.4E-18 117.9 14.8 167 60-231 3-211 (238)
453 2kdg_A Myotilin; immonoglobuli 99.6 1.2E-14 4.1E-19 104.3 8.4 92 55-149 4-97 (100)
454 2edy_A Receptor-type tyrosine- 99.6 9.2E-15 3.1E-19 105.5 7.8 92 341-460 7-101 (103)
455 2edb_A Netrin receptor DCC; tu 99.6 1.9E-14 6.6E-19 105.7 9.6 91 341-459 16-106 (116)
456 2vol_A Murine IGG FC; FC, zinc 99.6 1E-14 3.5E-19 120.1 9.1 120 18-137 68-197 (207)
457 2edj_A Roundabout homolog 2; K 99.6 3.8E-14 1.3E-18 101.6 10.9 93 55-151 7-99 (100)
458 2aty_A Complement receptor chi 99.5 4.1E-14 1.4E-18 127.7 13.4 159 68-231 180-361 (376)
459 1g1c_A Immunoglobulin-like dom 99.5 3.9E-14 1.3E-18 101.3 10.2 90 56-146 5-96 (99)
460 2cqv_A MLCK, myosin light chai 99.5 6E-14 2E-18 103.2 11.4 97 55-156 6-105 (114)
461 2ic2_A CG9211-PA, GH03927P; IH 99.5 2.5E-14 8.4E-19 104.5 9.0 99 342-459 5-110 (115)
462 1hxm_B Gamma-delta T-cell rece 99.5 1.7E-14 5.7E-19 122.0 9.4 136 8-145 65-226 (242)
463 1wfu_A Unnamed protein product 99.5 3E-14 1E-18 104.0 9.2 91 343-460 16-112 (120)
464 3t04_D Monobody 7C12; engineer 99.5 7.8E-14 2.7E-18 99.9 11.3 90 342-457 7-99 (103)
465 2dn7_A Receptor-type tyrosine- 99.5 3.6E-14 1.2E-18 103.1 9.7 94 338-459 3-97 (107)
466 3omz_A Human vdelta1 gamma del 99.5 5.2E-14 1.8E-18 120.4 12.3 116 18-133 79-230 (259)
467 3q5y_A TCR N15 beta; IG, T cel 99.5 4.1E-14 1.4E-18 119.6 11.5 131 8-138 61-214 (240)
468 2db8_A Tripartite motif protei 99.5 1.6E-14 5.4E-19 105.1 7.6 92 342-460 9-102 (110)
469 1uem_A KIAA1568 protein; immun 99.5 3.1E-14 1.1E-18 105.3 9.3 96 340-460 13-110 (117)
470 1eer_B Epobp, erythropoietin r 99.5 1.6E-13 5.3E-18 114.4 14.5 182 248-460 23-222 (227)
471 1c5d_H Monoclonal antibody aga 99.5 5.9E-14 2E-18 116.3 11.7 128 8-138 63-206 (215)
472 4dzb_B Vbeta2 (MAIT T cell rec 99.5 2E-14 6.8E-19 122.1 8.9 129 8-138 63-221 (246)
473 2xqy_G A13-D6.3 monoclonal ant 99.5 5.7E-14 2E-18 119.7 11.5 129 8-137 70-214 (261)
474 2gys_A Cytokine receptor commo 99.5 5.5E-13 1.9E-17 122.3 18.8 136 244-381 107-256 (419)
475 3irg_B Obscurin-like protein 1 99.5 4.7E-14 1.6E-18 102.5 9.4 94 54-152 11-107 (107)
476 1u2h_A APEG-1, aortic preferen 99.5 5.2E-14 1.8E-18 100.7 9.4 89 55-145 4-95 (99)
477 3nfj_J T cell receptor beta ch 99.5 2.7E-14 9.4E-19 121.1 9.2 132 7-138 59-220 (245)
478 3bn9_D E2 FAB heavy chain; ant 99.5 1.9E-14 6.4E-19 122.2 8.0 127 8-136 64-218 (257)
479 2yuz_A Myosin-binding protein 99.5 5E-14 1.7E-18 100.3 8.9 89 56-153 7-98 (100)
480 2kkq_A Myotilin; unknown funct 99.5 1.1E-13 3.9E-18 101.8 11.1 96 54-153 13-112 (116)
481 2yr3_A Myosin light chain kina 99.5 1.9E-14 6.4E-19 103.0 6.5 90 53-145 8-97 (99)
482 3qhz_H Human monoclonal antibo 99.5 1.5E-13 5.2E-18 115.4 13.1 172 63-239 7-225 (232)
483 3o3u_N Maltose-binding peripla 99.5 9.5E-14 3.2E-18 133.6 13.3 130 7-138 421-567 (581)
484 3qp3_A Titin; I-SET IG-like, s 99.5 3.7E-14 1.3E-18 102.3 7.9 90 54-146 6-98 (103)
485 4ei6_B Vbeta16 XV19 type II na 99.5 4.7E-14 1.6E-18 119.7 9.9 127 10-138 64-220 (245)
486 2rgs_A I, IG gamma-2B heavy ch 99.5 1.3E-14 4.4E-19 120.5 6.2 120 18-137 76-205 (218)
487 3irg_A Titin; IG-like, titin, 99.5 8.2E-14 2.8E-18 99.9 9.5 90 56-148 5-97 (100)
488 3qhz_H Human monoclonal antibo 99.5 4.1E-14 1.4E-18 118.8 9.1 131 7-138 67-219 (232)
489 2yux_A Myosin-binding protein 99.5 5.7E-14 2E-18 104.1 8.9 97 331-454 7-105 (120)
490 3kvq_A Vascular endothelial gr 99.5 3.1E-14 1E-18 103.7 7.2 100 49-152 3-102 (108)
491 1ow0_A IG alpha-1 chain C regi 99.5 2.9E-15 1E-19 124.0 2.0 164 60-231 8-199 (214)
492 3puc_A Titin; I-SET IG-like do 99.5 1.1E-13 3.8E-18 98.9 9.7 89 55-146 5-96 (99)
493 2dav_A SLOW MYBP-C, myosin-bin 99.5 1.1E-13 3.7E-18 101.3 9.6 92 57-148 8-111 (126)
494 1wit_A Twitchin 18TH IGSF modu 99.5 4.4E-14 1.5E-18 99.6 7.3 88 56-148 2-92 (93)
495 3qib_D 2B4 beta chain; IG doma 99.5 5.4E-14 1.8E-18 121.1 9.3 126 11-138 90-245 (270)
496 1oga_E TRBC1, T-cell receptor 99.5 2.3E-13 8E-18 115.7 12.9 168 59-232 6-218 (252)
497 1fhg_A Telokin; immunoglobulin 99.5 6.6E-14 2.3E-18 109.0 8.7 104 49-157 34-141 (154)
498 3n9g_H FAB fragment of MAB CR4 99.5 5E-13 1.7E-17 112.0 14.6 173 63-241 7-223 (230)
499 3tv3_H PGT128 heavy chain, IG 99.5 1.7E-13 5.9E-18 115.4 11.9 173 62-239 6-233 (239)
500 3tv3_H PGT128 heavy chain, IG 99.5 5.7E-14 1.9E-18 118.4 8.3 129 8-138 71-227 (239)
No 1
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=100.00 E-value=1.8e-46 Score=344.00 Aligned_cols=368 Identities=21% Similarity=0.321 Sum_probs=281.2
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCccc---cccEEEee---cCeEEEeecCCCCCeEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEPYQ---TKDIVVMQ---NGSLLFTRVNQNHQGRY 127 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~~~---~~~~~~~~---~~~l~i~~~~~~d~G~y 127 (460)
+|.+.. +....+.+|+++.|.|.+.|.|.+ .|+|+|+ |..+.... ..++.+.. .+.|.|.++..+|+|.|
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 78 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 78 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCC-EEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCC-eEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEE
Confidence 355554 445667779999999999998866 7999999 88775321 34454443 34799999999999999
Q ss_pred EEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEe
Q psy535 128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIV 205 (460)
Q Consensus 128 ~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~ 205 (460)
+|.|.|..|.. +..+.|.|..+|.+...+.. ..+..|+.+.|.|.+ .+.|.+.+.|++++..+... .++...
T Consensus 79 ~C~a~n~~g~~--~~~~~l~V~~~P~~~~~~~~-~~~~~g~~~~l~C~~---~g~p~~~i~W~~~g~~l~~~~~~~~~~~ 152 (389)
T 2jll_A 79 DCEAASRIGGH--QKSMYLDIEYAPKFISNQTI-YYSWEGNPINISCDV---KSNPPASIHWRRDKLVLPAKNTTNLKTY 152 (389)
T ss_dssp EEEEECSSCEE--EEEEEEEEEEEEEECCSCCE-EEECTTCCEEEEECE---EEESCCEEEEEETTEESSCTTCTTEEEE
T ss_pred EEEEEeCCCCc--ceEEEEEEEeCCEEecCcce-EEeccCCEEEEEEEE---EecCCCeEEEEECCccCCcccCceEEEe
Confidence 99999998875 45566666778877665443 257889999999999 68899999999954433222 234332
Q ss_pred ----cceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEE
Q psy535 206 ----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYV 280 (460)
Q Consensus 206 ----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~ 280 (460)
...|.|.++...|.|.|+|.|.|..|.......+.+.. +|.+|..+.. ......+.|.|.++...++.++..|.
T Consensus 153 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~-~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~ 231 (389)
T 2jll_A 153 STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQ 231 (389)
T ss_dssp ECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECC-CCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEE
T ss_pred ccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecC-CCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEE
Confidence 23699999999999999999999999988887777754 5666755543 44567899999987666666667899
Q ss_pred EEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCC-CCCCCcceEEEeec-ceE
Q psy535 281 IWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP-KPGPPRNVSVTEVN-NGF 358 (460)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~-~P~~p~~~~~~~~~-~~v 358 (460)
+.|+..+...|....... ....+.|.+|.+++.|.|+|.|.|..|.+..+..+.+.+... +|.+|. +.....+ +++
T Consensus 232 v~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~-~~~~~~~~~~v 309 (389)
T 2jll_A 232 VDVKEVASEIWKIVRSHG-VQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSF 309 (389)
T ss_dssp EEEEETTCSCCEEEECST-TCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCC-EEEEEETTTEE
T ss_pred EEEEECCCcccEEeeccC-CcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCc-cccccCcCCEE
Confidence 999888777777654432 557899999999999999999999999999999888887665 566775 5554444 699
Q ss_pred EEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEE
Q psy535 359 VISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEF 438 (460)
Q Consensus 359 ~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~ 438 (460)
.|+|.+|.++++++.+|.|+|+..+. ..|............+.|.+|.|++.|.|
T Consensus 310 ~l~W~~p~~~~~~i~~Y~v~~~~~~~-------------------------~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~ 364 (389)
T 2jll_A 310 KLSITKQDDGGAPILEYIVKYRSKDK-------------------------EDQWLEKKVQGNKDHIILEHLQWTMGYEV 364 (389)
T ss_dssp EEEECCCCCCSSCCCEEEEEEEC------------------------------CCBCCEECTTCCEEEECSCCTTCEEEE
T ss_pred EEEEECCCCCCCcccEEEEEEEeCCC-------------------------CcceeEeeccCCcceEEeCCcCCCCEEEE
Confidence 99999998888899999999997432 12222222335667899999999999999
Q ss_pred EEEEeecCCCCCCCceeEeecC
Q psy535 439 QVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 439 ~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
+|+|.|..|.|++|.. .++|.
T Consensus 365 ~V~A~n~~G~s~~s~~-~~~T~ 385 (389)
T 2jll_A 365 QITAANRLGYSEPTVY-EFSMP 385 (389)
T ss_dssp EEEEEC-CCBCCCEEE-EEECC
T ss_pred EEEEEcCCcCCCceee-EecCC
Confidence 9999999999999966 66663
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=5.1e-37 Score=294.39 Aligned_cols=410 Identities=22% Similarity=0.328 Sum_probs=274.0
Q ss_pred CCcccCcccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeE
Q psy535 1 MNTKVGSLETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQG 74 (460)
Q Consensus 1 ~~~~~~~~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~ 74 (460)
||+.....+.|+++... ++|.|.+++.+|+|.|+|.|.|..|.. .....|.|. .+|.+...+......+|+++
T Consensus 41 k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v 119 (570)
T 3b43_A 41 KEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAV-ASSAVLVIKERKLPPSFARKLKDVHETLGFPV 119 (570)
T ss_dssp CSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEECCCCCCCEESSCCCCEEEETTSCE
T ss_pred ECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceE-EEEEEEEECCCCCCCcccccCCCeEecCCCeE
Confidence 34455555667766543 389999999999999999999998875 455666665 35666666666777889999
Q ss_pred EEEEEEecCCCCCeEEEeeCCeecCccccccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee-CCC
Q psy535 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-KPP 152 (460)
Q Consensus 75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~-~~p 152 (460)
.|.|.+.|.|++ .|+|+|+|..+......... ....++|.|.++..+|+|.|+|.|.|..|....+..+.|... .||
T Consensus 120 ~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp 198 (570)
T 3b43_A 120 AFECRINGSEPL-QVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPP 198 (570)
T ss_dssp EEEEEEESSSSC-EEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCC
T ss_pred EEEEEEccCCCC-EEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCC
Confidence 999999998765 89999999988643221111 122357999999999999999999999888766666666543 467
Q ss_pred ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--e--cceEEEccccceeceEEEEEEec
Q psy535 153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--V--GGNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~~~g~y~C~a~n 228 (460)
.+...|... .+..|+.+.|.|.+ .|.|.+.+.|++++..+....+..+ . ...|.|.++...|+|.|+|.|.|
T Consensus 199 ~~~~~p~~~-~v~~G~~~~l~C~~---~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 274 (570)
T 3b43_A 199 FFDLKPVSV-DLALGESGTFKCHV---TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 274 (570)
T ss_dssp EEEECCCCB-CCBSBSCEEEEEEE---ESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEE
T ss_pred ccccCCcee-EecCCCeEEEEEEE---EECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEEC
Confidence 777777665 67899999999999 7889999999996554444444333 2 34799999999999999999999
Q ss_pred ccceeeeeeEEEEecCCCCC--CCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC---CeeeeeccCCCCce
Q psy535 229 EVATIVQAAQLVVEGTQPHA--PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPPGSTQ 303 (460)
Q Consensus 229 ~~g~~~~~~~l~v~~~~p~~--p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 303 (460)
..|.......|.|..+|... +........+..+.|.|.. .+.+.+. +.|++++... ....... ......
T Consensus 275 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~--~g~P~p~---v~W~k~~~~l~~~~~~~~~~-~~~~~~ 348 (570)
T 3b43_A 275 VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIK---VLWYKDETEIQESSKFRMSF-VESVAV 348 (570)
T ss_dssp TTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEE--ESSSSCE---EEEEETTEECCCSSSEEEEE-ETTEEE
T ss_pred CCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEE--eeCCCCE---EEEeECCEECCCCCcEEEEE-ECCEEE
Confidence 99998888888776432110 0111122345678888874 3444443 6788765421 1111111 113457
Q ss_pred EEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcC
Q psy535 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDG 383 (460)
Q Consensus 304 ~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~ 383 (460)
|.|.++...+.|.|+|.|.|..|....+..+.+...+.....|..+.+.. ...+.|....... |. ..|.|..++
T Consensus 349 L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~-G~~v~l~C~~~g~---P~--p~v~W~k~g 422 (570)
T 3b43_A 349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GADVHLECELQGT---PP--FQVSWHKDK 422 (570)
T ss_dssp EEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECT-TCCEEEEEEEESS---SS--CCCEEEETT
T ss_pred EEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecC-CCEEEEEEEEecC---CC--CEEEEEECC
Confidence 99999999999999999999999776665666553221112444443332 2345555443211 10 124455444
Q ss_pred CeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCC
Q psy535 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM 450 (460)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~ 450 (460)
.. +.. ...+.+ .. ......+.|.++.....-.++..|.|..|...
T Consensus 423 ~~--l~~------~~~~~~------------~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 467 (570)
T 3b43_A 423 RE--LRS------GKKYKI------------MS--ENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467 (570)
T ss_dssp EE--CCS------SSSEEE------------EE--ETTEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred EE--CcC------CCCEEE------------EE--cCCEEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence 20 000 000100 00 01234677888888888888999999999654
No 3
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.1e-37 Score=297.00 Aligned_cols=395 Identities=21% Similarity=0.346 Sum_probs=265.2
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD 94 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~ 94 (460)
++|.|.+++.+|+|.|+|.|.|..|.. .....|.|. .||.+...|....+.+|++++|.|.+.|.|++ .++|+|+
T Consensus 157 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~i~W~k~ 234 (570)
T 3b43_A 157 ATLQILQTDQSHVGQYNCSASNPLGTA-SSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKD 234 (570)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCC-EEEEEET
T ss_pred EEEEECcCChHHCEEEEEEEEeCCcEE-EEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCC-EEEEEEC
Confidence 489999999999999999999998875 556677764 46777788888888999999999999998765 8999999
Q ss_pred CeecCccccccEEEee-cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEE
Q psy535 95 KRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMH 173 (460)
Q Consensus 95 ~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~ 173 (460)
+..+.+....++.... .+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.+.........+..|+.+.|.
T Consensus 235 g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~ 312 (570)
T 3b43_A 235 NREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD--SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYE 312 (570)
T ss_dssp TEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEE--EEEEEECCBCCCEEEECCCSBCCEESSCEEEEE
T ss_pred CEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcE--EEEEEEEeecCCcccccCCCccEEcCCCcEEEE
Confidence 9998753332333222 2479999999999999999999988875 445667778899877665544357789999999
Q ss_pred eeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCC--C
Q psy535 174 CEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP--H 247 (460)
Q Consensus 174 C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p--~ 247 (460)
|.+ .|.|.+.+.|++++..+....+..+. ...|.|.++...|+|.|+|.|.|..|.......|.|..+|. .
T Consensus 313 C~~---~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~ 389 (570)
T 3b43_A 313 CKI---GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK 389 (570)
T ss_dssp EEE---ESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECS
T ss_pred EEE---eeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeec
Confidence 999 78999999999965544444444332 24699999999999999999999999988888888875321 1
Q ss_pred CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC---CeeeeeccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 324 (460)
Q Consensus 248 ~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~ 324 (460)
.|..+. ...+..+.|.|.. .+.|.+. +.|++++... ....+. .......|.|.++...+.|.|.|.|.|.
T Consensus 390 ~~~~~~-~~~G~~v~l~C~~--~g~P~p~---v~W~k~g~~l~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~ 462 (570)
T 3b43_A 390 KPHPVE-TLKGADVHLECEL--QGTPPFQ---VSWHKDKRELRSGKKYKIM-SENFLTSIHILNVDSADIGEYQCKASND 462 (570)
T ss_dssp CCCCEE-ECTTCCEEEEEEE--ESSSSCC---CEEEETTEECCSSSSEEEE-EETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CCCcee-ecCCCEEEEEEEE--ecCCCCE---EEEEECCEECcCCCCEEEE-EcCCEEEEEECCCChhhCEEEEEEEEEC
Confidence 222222 2345678888874 3444443 5677765321 111111 1113357899999999999999999999
Q ss_pred CCCCCCCCcEEEEccCCCCC---CCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535 325 LGDGMLSNIVVVKTKGPKPG---PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401 (460)
Q Consensus 325 ~G~~~~s~~~~~~~~~~~P~---~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~ 401 (460)
.|....+..+.+.. +|. .+.++.+. ....+.|.......+ + -.|.|..++. .+......+
T Consensus 463 ~G~~~~~~~l~v~~---~P~~~~~~~~~~~~-~g~~~~l~c~~~g~p--~---~~v~W~k~~~-------~~~~~~~~~- 525 (570)
T 3b43_A 463 VGSDTCVGSITLKA---PPRFVKKLSDISTV-VGEEVQLQATIEGAE--P---ISVAWFKDKG-------EIVRESDNI- 525 (570)
T ss_dssp SCEEEEEEEEEECC---CCEEEECCCCBCCB-TTCCEEEEEEEESCS--S---CCCEEEETTE-------ECCCCTTTE-
T ss_pred CCeEEEEEEEEecc---CCcccccCCCceec-CCCeEEEEEEEecCC--C---CEEEEEeCCe-------EeccCCCeE-
Confidence 99765444444432 121 12221111 122344443321110 0 0133333321 000000000
Q ss_pred ccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456 (460)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~ 456 (460)
.. ....+...+.|.++.+...-.+...|.|.+|....+-.+.
T Consensus 526 ----------~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~ 567 (570)
T 3b43_A 526 ----------WI---SYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567 (570)
T ss_dssp ----------EE---CCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEEC
T ss_pred ----------EE---EECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEE
Confidence 00 0112345778888888878888899999999875554443
No 4
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=285.47 Aligned_cols=412 Identities=17% Similarity=0.137 Sum_probs=279.0
Q ss_pred eEEEeecCCCC-CeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEE-Ee-
Q psy535 19 TLVINPVGSDD-SGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVT-WT- 92 (460)
Q Consensus 19 ~L~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~-W~- 92 (460)
.|.|..+...+ ++.|+|.+.+..|......+.+.+. .+|.+. .+....+.+|++++|.|.+.|.|.+ .+. |+
T Consensus 124 ~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p-~i~~W~~ 201 (731)
T 2v5y_A 124 ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVA-GDRLWLQ 201 (731)
T ss_dssp EEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCT-TCEEEEE
T ss_pred EEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc-cccceEEeCCCcEEEEEEeCCCCCC-ceeEEEe
Confidence 35555543333 5889998877777643333443332 466665 5667888999999999999999887 466 88
Q ss_pred -eCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCC
Q psy535 93 -KDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGE 168 (460)
Q Consensus 93 -~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~ 168 (460)
++|..+.... ...+. ..++|.|.++...|+|.|+|.|.|..|.. .+..+.|.|..+|.....+... .....
T Consensus 202 ~~~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~-~s~~~~l~V~~~P~~~~~p~~~--~~~~~ 276 (731)
T 2v5y_A 202 GIDVRDAPLKE--IKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG-ISNYAELVVKEPPVPIAPPQLA--SVGAT 276 (731)
T ss_dssp ESSSCCEEEEE--EEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEE-ECCCEEEEEECCCCBSSCCEEE--EECSS
T ss_pred cCCCccccccc--eEEeccccceEEEEEcccccccCeEEEEEEECCCCCc-ceeeEEEEEecCCCCCCCccee--ccCCc
Confidence 6777764311 11111 12579999999999999999999998862 2334556667777655444432 23456
Q ss_pred eEEEEeeeeccCC-CCCC--eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEe--cccceeeeeeEEEEe-
Q psy535 169 SVDMHCEAQEAEG-TQKP--TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVS--NEVATIVQAAQLVVE- 242 (460)
Q Consensus 169 ~~~l~C~~~~~~~-~p~~--~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~--n~~g~~~~~~~l~v~- 242 (460)
.+.|.|......+ .+.. .+.|...++... .........+.|.++...+.+.|+|.|. |..|....+..+.+.
T Consensus 277 ~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t 354 (731)
T 2v5y_A 277 YLWIQLNANSINGDGPIVAREVEYCTASGSWN--DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRT 354 (731)
T ss_dssp CEEEECCCSSBSSCSCCCEEEEEEEESSSSCE--EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEEC
T ss_pred eEEEEeCCcccCCCCccEEEEEEEEECCCCce--EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeee
Confidence 7888887632122 2222 567766332111 1111234578999999999999999999 998876544433332
Q ss_pred --cCCCCCCCceee-eeecceEEEEeecCCCCC-CCceeeEEEEEEecCCCCeeee----eccCCCCceEEEccCccCcc
Q psy535 243 --GTQPHAPYNITG-VATEFSVTLEWLPGYSGG-PDLKQNYVIWYREQGNKDWLPI----PVTPPGSTQITINRLTPATT 314 (460)
Q Consensus 243 --~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~l~~~~~ 314 (460)
..||.+|.++.. .....++.|+|.++.... ...+..|.+.|+......+... .........+.|.+|.+++.
T Consensus 355 ~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 434 (731)
T 2v5y_A 355 KCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTN 434 (731)
T ss_dssp CCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCE
T ss_pred cCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCE
Confidence 234566777654 456779999999864321 2233689998887654333211 12233567899999999999
Q ss_pred EEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCc--ceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeecccc
Q psy535 315 YEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR--NVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392 (460)
Q Consensus 315 ~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~--~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~ 392 (460)
|.|+|.|.|..|.+ .|..+.+.+...+|.+|. .+......+++.|+|++|...++.|.+|+|+|+..+....
T Consensus 435 Y~~~V~A~n~~G~s-~S~~~~~~T~~~~P~~p~~~~~~~~~~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~----- 508 (731)
T 2v5y_A 435 VSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDP----- 508 (731)
T ss_dssp EEEEEEEECSSCEE-ECCCEEEECCCCCCCCCCTTTCEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC------
T ss_pred EEEEEEEEcCCCCC-CCceEEEEccCCCCCCCCcceEEeeecCCeEEEEEcCCCCCCCCccceEEEEEECcCCCc-----
Confidence 99999999999998 488899999888887654 5665554579999999998878899999999997542000
Q ss_pred CCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
.+.. .+. .+ ........+.++|.+|.|++.|.|+|+|.|..|.|++|. +.++|
T Consensus 509 ------~~~~----~~~-~~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T 561 (731)
T 2v5y_A 509 ------EIDL----SNQ-SG--RVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTT 561 (731)
T ss_dssp --------CC----CCC-EE--EEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEEC
T ss_pred ------cccc----cCc-ce--EEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEEc
Confidence 0000 000 00 011124567899999999999999999999999999884 66665
No 5
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=6.2e-33 Score=270.70 Aligned_cols=383 Identities=16% Similarity=0.220 Sum_probs=256.3
Q ss_pred ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCC
Q psy535 8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANP 84 (460)
Q Consensus 8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~ 84 (460)
+.+|+.+..+++|.|.+++.+|+|.|+|.+.+.........+.|.|.. +|.+... ....+.+|+.+.|.|.+.+ |
T Consensus 61 ~~gr~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~~v~~g~~v~l~C~~~~-p 138 (642)
T 1e07_A 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN-NSKPVEDKDAVAFTCEPET-Q 138 (642)
T ss_pred ccCceeeccCCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEcc-CceeEecCCcEEEEEECCC-C
Confidence 357899988999999999999999999999986433335567788875 3444332 3355778999999999988 5
Q ss_pred CCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC-ceeeCCCccc
Q psy535 85 TFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP-AFTIKPEAMY 162 (460)
Q Consensus 85 ~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p-~~~~~~~~~~ 162 (460)
. +.++|+++|..+.. ..++... .++.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..+| ...+.+...
T Consensus 139 ~-~~v~W~~~g~~l~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~p~~~~~~~~~~- 213 (642)
T 1e07_A 139 D-ATYLWWVNNQSLPV--SPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSAR-RSDSVILNVLYGPDAPTISPLNT- 213 (642)
T ss_pred C-eeEEEEECCeECCC--CCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCc-ccceEEEEEEeCCCCcEEecCCc-
Confidence 4 48999999998863 2333332 35689999999999999999999988764 4455666666444 344445444
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeee--eEEE
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA--AQLV 240 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~--~~l~ 240 (460)
.+..|+.+.|.|.+ .+.|.+.+.|++++. .+. ....|.|.++...|.|.|+|.|.|..|....+ ..+.
T Consensus 214 ~~~~G~~~~l~C~~---~g~p~~~i~W~~~g~-~i~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~ 283 (642)
T 1e07_A 214 SYRSGENLNLSCHA---ASNPPAQYSWFVNGT-FQQ------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283 (642)
T ss_pred ccccCCEEEEEEEc---CCCCCcEEEEEECCe-Ecc------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEE
Confidence 67899999999998 789999999999443 332 24569999999999999999999988865443 4555
Q ss_pred EecCCCCCCCce----eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCceEEEccCccCccE
Q psy535 241 VEGTQPHAPYNI----TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGSTQITINRLTPATTY 315 (460)
Q Consensus 241 v~~~~p~~p~~~----~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~ 315 (460)
+...++ +|... .....+..+.|.|... +.+ +. +.|++++..... ...... .....|.|.++...+.|
T Consensus 284 v~~~~~-~p~i~~~~~~~~~~g~~v~l~C~~~--~~p-~~---v~W~~~g~~l~~~~~~~~~-~~~~~L~i~~~~~~d~G 355 (642)
T 1e07_A 284 VYAEPP-KPFITSNNSNPVEDEDAVALTCEPE--IQN-TT---YLWWVNNQSLPVSPRLQLS-NDNRTLTLLSVTRNDVG 355 (642)
T ss_pred EEccCC-CCEEEcCCceeEecCCcEEEEEECC--CCC-cc---EEEEECCccCCCcCCEEEe-CCCCEEEEeccCcccCe
Confidence 544222 22211 1222345688998853 222 22 677777543211 111111 13568999999999999
Q ss_pred EEEEEEEcCCCCCCC-CCcEEEEccCCCCC-CCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccC
Q psy535 316 EFQVVGKNELGDGML-SNIVVVKTKGPKPG-PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI 393 (460)
Q Consensus 316 ~~~~~a~n~~G~~~~-s~~~~~~~~~~~P~-~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~ 393 (460)
.|+|.|.|..|.... ...+.+...+..|. .|....+ .....+.|....... +.. .+.|..++.
T Consensus 356 ~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~-~~g~~~~l~C~~~g~---p~~--~i~W~~~g~--------- 420 (642)
T 1e07_A 356 PYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYY-RPGVNLSLSCHAASN---PPA--QYSWLIDGN--------- 420 (642)
T ss_pred eEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEe-cCCCcEEEEEEcCcc---CCC--eEEEEECCE---------
Confidence 999999999986421 23344432211111 2222222 223456666665321 111 355554442
Q ss_pred CCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454 (460)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~ 454 (460)
.......+.|.++.+.....+++.|.|..|....+..
T Consensus 421 ------------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 457 (642)
T 1e07_A 421 ------------------------IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTV 457 (642)
T ss_pred ------------------------EcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccce
Confidence 0012345788888888888999999999987766543
No 6
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=100.00 E-value=1.4e-33 Score=258.37 Aligned_cols=321 Identities=20% Similarity=0.256 Sum_probs=230.6
Q ss_pred cceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC
Q psy535 9 ETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT 85 (460)
Q Consensus 9 ~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 85 (460)
++|+.+..+ ++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.
T Consensus 51 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 129 (389)
T 2jll_A 51 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGH-QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPP 129 (389)
T ss_dssp SSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESC
T ss_pred CCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCc-ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCC
Confidence 678888754 499999999999999999999999885 7889999999998877776667889999999999999886
Q ss_pred CCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCccc
Q psy535 86 FQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMY 162 (460)
Q Consensus 86 ~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~ 162 (460)
+ .++|++++..+......++....++ .|.|.++...|+|.|+|.|.|..|..... +.+.+..+|...... ..
T Consensus 130 ~-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~--~~l~v~~~P~~P~~~--~~ 204 (389)
T 2jll_A 130 A-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE--YILALADVPSSPYGV--KI 204 (389)
T ss_dssp C-EEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEE--EEEEECCCCCCCEEE--EE
T ss_pred C-eEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEE--EEEEecCCCCCCcce--EE
Confidence 5 8999999999875444455554433 69999999999999999999999885443 455555555322111 11
Q ss_pred ccCCCCeEEEEeeeec-cCCCCCC--eeEEEcCCCccCCcccEEE--ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 163 QRKVGESVDMHCEAQE-AEGTQKP--TITWQRRDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~-~~~~p~~--~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
....+..+.|.|.... +.+.|.. .+.|.+.+..... .... ....+.|.++...+.|.|+|.|.|..|....+.
T Consensus 205 ~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~ 282 (389)
T 2jll_A 205 IELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWK--IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK 282 (389)
T ss_dssp EEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCE--EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCC
T ss_pred eeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccE--EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCc
Confidence 2234567888887421 1233432 5778775432221 1111 124699999999999999999999998765544
Q ss_pred EEEEe---cCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCcc
Q psy535 238 QLVVE---GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT 314 (460)
Q Consensus 238 ~l~v~---~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 314 (460)
.+.+. ..+|.+|..........++.|+|.++.+++.+. ..|.++|+..+...|............+.|.+|.+++.
T Consensus 283 ~~~~~t~~~~~p~~p~~~~~~~~~~~v~l~W~~p~~~~~~i-~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~ 361 (389)
T 2jll_A 283 IEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPI-LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMG 361 (389)
T ss_dssp CEEEECCCCCCCCCCCEEEEEETTTEEEEEECCCCCCSSCC-CEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCE
T ss_pred ceEEEecCCCCCCCCccccccCcCCEEEEEEECCCCCCCcc-cEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCE
Confidence 33332 125666654444557789999999876655554 79999999876666654333333567899999999999
Q ss_pred EEEEEEEEcCCCCCCCCCcEEEEcc
Q psy535 315 YEFQVVGKNELGDGMLSNIVVVKTK 339 (460)
Q Consensus 315 ~~~~~~a~n~~G~~~~s~~~~~~~~ 339 (460)
|.|+|.|.|..|.|.+|.. .+.+.
T Consensus 362 Y~~~V~A~n~~G~s~~s~~-~~~T~ 385 (389)
T 2jll_A 362 YEVQITAANRLGYSEPTVY-EFSMP 385 (389)
T ss_dssp EEEEEEEEC-CCBCCCEEE-EEECC
T ss_pred EEEEEEEEcCCcCCCceee-EecCC
Confidence 9999999999999887744 55554
No 7
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1.1e-32 Score=268.82 Aligned_cols=387 Identities=17% Similarity=0.249 Sum_probs=265.5
Q ss_pred CcccCcccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC-eeEEcceeeeecceeeEEEEEE
Q psy535 2 NTKVGSLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA-KVTFTPTVQYLPFRLQGVVQCH 79 (460)
Q Consensus 2 ~~~~~~~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~ 79 (460)
|++....+.|+.+..+ ++|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..+| .+.+.|....+.+|+.+.|.|.
T Consensus 147 ~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~ 226 (642)
T 1e07_A 147 NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCH 226 (642)
T ss_pred CCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEE
Confidence 3444556678887654 5999999999999999999999888755677888888544 4556677777889999999999
Q ss_pred EecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC-ceeeCC
Q psy535 80 IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP-AFTIKP 158 (460)
Q Consensus 80 ~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p-~~~~~~ 158 (460)
+.+.|.+ .++|+++|..+. ..+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|..++ ...+..
T Consensus 227 ~~g~p~~-~i~W~~~g~~i~----------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~ 295 (642)
T 1e07_A 227 AASNPPA-QYSWFVNGTFQQ----------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS 295 (642)
T ss_pred cCCCCCc-EEEEEECCeEcc----------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEc
Confidence 9888766 899999998874 2356999999999999999999999887766667777776532 112222
Q ss_pred CcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--ecceEEEccccceeceEEEEEEeccccee-ee
Q psy535 159 EAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATI-VQ 235 (460)
Q Consensus 159 ~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~ 235 (460)
.....+..|+.+.|.|.+ .+.| +.+.|++++..+....++.. .+..|.|.++...|.|.|+|.|.|..|.. +.
T Consensus 296 ~~~~~~~~g~~v~l~C~~---~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~ 371 (642)
T 1e07_A 296 NNSNPVEDEDAVALTCEP---EIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD 371 (642)
T ss_pred CCceeEecCCcEEEEEEC---CCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCccee
Confidence 222245668889999998 5665 79999996554433444444 35689999999999999999999998864 34
Q ss_pred eeEEEEecCCCCCCCce---eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccC
Q psy535 236 AAQLVVEGTQPHAPYNI---TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPA 312 (460)
Q Consensus 236 ~~~l~v~~~~p~~p~~~---~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 312 (460)
...|.|...|+ .+... .....+..+.|.|.. .+.+.+. +.|++++.. ......|.|.++...
T Consensus 372 ~~~l~V~~~p~-~~~~~~~~~~~~~g~~~~l~C~~--~g~p~~~---i~W~~~g~~---------~~~~~~L~i~~~~~~ 436 (642)
T 1e07_A 372 PVILNVLYGPD-DPTISPSYTYYRPGVNLSLSCHA--ASNPPAQ---YSWLIDGNI---------QQHTQELFISNITEK 436 (642)
T ss_pred eEEEEEEcCCC-CCeecCCceEecCCCcEEEEEEc--CccCCCe---EEEEECCEE---------cCCCceEEEccCChh
Confidence 46677764332 22111 123345678888874 3445443 677776431 113467999999999
Q ss_pred ccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcc----eEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeee
Q psy535 313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN----VSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTL 388 (460)
Q Consensus 313 ~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~----~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~ 388 (460)
+.|.|+|.|.|..|....+..+.+..... +.+|.- -.....++.+.|.+.... + ...+.|..++.- +
T Consensus 437 d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~-~~~p~i~~~~~~~v~~g~~v~l~C~~~~----~--~~~i~W~~~g~~--l 507 (642)
T 1e07_A 437 NSGLYTCQANNSASGHSRTTVKTITVSAE-LPKPSISSNNSKPVEDKDAVAFTCEPEA----Q--NTTYLWWVNGQS--L 507 (642)
T ss_pred hCeEEEEEEEcCCCCCcccceEEEEEecc-CCCceEecCCceeecCCCeEEEEEECCC----C--CcEEEEEECCEe--C
Confidence 99999999999999776666555554332 222211 111222457888887652 1 124455544420 0
Q ss_pred ccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCC
Q psy535 389 NKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449 (460)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s 449 (460)
.. ..++ .+ ..+...+.|.++.......+++.|.|..|..
T Consensus 508 ~~------~~~~-------------~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 546 (642)
T 1e07_A 508 PV------SPRL-------------QL---SNGNRTLTLFNVTRNDARAYVCGIQNSVSAN 546 (642)
T ss_pred CC------CCcE-------------EE---cCCCcEEEEeecChhcCceEEEEeEcCCCCc
Confidence 00 0000 00 1123578888888888888889999999864
No 8
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=7.3e-34 Score=284.84 Aligned_cols=397 Identities=20% Similarity=0.298 Sum_probs=271.6
Q ss_pred cceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCe
Q psy535 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQY 88 (460)
Q Consensus 9 ~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 88 (460)
+.|+.. .+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..++.+...|....+.+|++++|.|.+.+.|.+ .
T Consensus 298 ~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~ 374 (816)
T 3dmk_A 298 NDRVKQ-VSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-T 374 (816)
T ss_dssp SSSEEE-ETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCC-E
T ss_pred CCceEe-ccceEEECCCCHhHCEEEEEEEEcCCCce-EEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCC-E
Confidence 445544 46799999999999999999999998875 67788889888888888888889999999999999998766 8
Q ss_pred EEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe-eCCCceeeCCCcccccCCC
Q psy535 89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-RKPPAFTIKPEAMYQRKVG 167 (460)
Q Consensus 89 v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v-~~~p~~~~~~~~~~~~~~g 167 (460)
++|+++|..+.. .++.|.|.++..+|+|.|+|.|.|..|....+..+.|.+ ..+|.+...+... .+..|
T Consensus 375 v~W~k~g~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~-~v~~G 444 (816)
T 3dmk_A 375 VSWMKDGKAIGH---------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEE-TMEPG 444 (816)
T ss_dssp EEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCE-EECSS
T ss_pred EEEEECCEECCC---------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcce-EEcCC
Confidence 999999998853 245799999999999999999999888765555555443 3566666655554 67899
Q ss_pred CeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-----c----ceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535 168 ESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-----G----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 168 ~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-----~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
+.+.|.|.+ .|.|.+.+.|++++..+....+.... + ..|.|.++...|.|.|+|.|.|..|.......
T Consensus 445 ~~v~L~C~~---~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 521 (816)
T 3dmk_A 445 PSVFLKCVA---GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK 521 (816)
T ss_dssp SCEEEEEEE---ECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEEE---ecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEE
Confidence 999999998 78999999999955444334443321 1 25999999999999999999999999888888
Q ss_pred EEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCc-cCccEEE
Q psy535 239 LVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLT-PATTYEF 317 (460)
Q Consensus 239 l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~~ 317 (460)
|.|...|...+........+..+.|.|.. .+.+. .-+.|++++......... .......+.|.++. ..+.|.|
T Consensus 522 l~V~~~p~~~~~~~~~v~~G~~v~l~C~~--~g~p~---~~i~W~k~~~~l~~~~~~-~~~~~~~l~i~~v~~~~d~G~Y 595 (816)
T 3dmk_A 522 LNVYGLPYIRQMEKKAIVAGETLIVTCPV--AGYPI---DSIVWERDNRALPINRKQ-KVFPNGTLIIENVERNSDQATY 595 (816)
T ss_dssp EEECSSCEECCCCCEEEETTCCEEEECCE--ECSSE---EEEEEEETTEESCCSTTE-EECTTSEEEESSCCHHHHCEEE
T ss_pred EEEecCCeeEccCCeEEecCCeEEEEEEe--cCCCC---CEEEEEECCeEcccCCce-EEecCCeEEEEecCccccCEEE
Confidence 88875432111111223356678888864 23332 246777765422111000 01134579999997 6899999
Q ss_pred EEEEEcCCCCCCCCCcEEEEccCCCCC---CCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCC
Q psy535 318 QVVGKNELGDGMLSNIVVVKTKGPKPG---PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIR 394 (460)
Q Consensus 318 ~~~a~n~~G~~~~s~~~~~~~~~~~P~---~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~ 394 (460)
+|.|.|..|... +..+.+.....++. .+.... ......+.|.+...... .+ ..|.|..++.-. .
T Consensus 596 ~C~a~n~~g~~~-~~~~~v~v~~~p~~~~~~~~~~~-~~~G~~v~L~C~~~~~~-~~---~~i~W~~~g~~l--~----- 662 (816)
T 3dmk_A 596 TCVAKNQEGYSA-RGSLEVQVMVLPRIIPFAFEEGP-AQVGQYLTLHCSVPGGD-LP---LNIDWTLDGQAI--S----- 662 (816)
T ss_dssp EEEEEESSSCEE-EEEEEEEEECCCCCBCCCCCSSC-EESSCEEEEEEBCCCSS-SC---CEEEEEETTBCC--C-----
T ss_pred EEEEEECCCcee-eeeEEEEEecCCccccccccccc-cCCCCeEEEEEEEeCCC-CC---CEEEEEECCeEc--C-----
Confidence 999999988542 22333332222111 112222 22246788888865321 11 245555554200 0
Q ss_pred CCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535 395 PEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454 (460)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~ 454 (460)
....+. ..........+.|.++.......+++.|.|..|....+..
T Consensus 663 -~~~~~~-------------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 708 (816)
T 3dmk_A 663 -EDLGIT-------------TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP 708 (816)
T ss_dssp -GGGTCE-------------EEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred -CCCCee-------------EEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEE
Confidence 000000 0001123457889999999999999999999997644433
No 9
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=1e-31 Score=259.39 Aligned_cols=411 Identities=18% Similarity=0.217 Sum_probs=262.0
Q ss_pred ccceEEEee---CC--eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535 8 LETRVVIKK---DG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 8 ~~~r~~~~~---~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
.++|+++.. +| +|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|..+|.+...+....+.+|++++|.|.+.+
T Consensus 60 ~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~ 138 (585)
T 2ocw_A 60 YAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKT 138 (585)
T ss_pred eeceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCc-eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecC
Confidence 467888875 23 79999999999999999999988775 7789999999999888888889999999999999997
Q ss_pred CCCCCeEEEeeCCeecCc-----------cccccEEEeecC------eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 83 NPTFQYVTWTKDKRLLEP-----------YQTKDIVVMQNG------SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 83 ~~~~~~v~W~~~~~~~~~-----------~~~~~~~~~~~~------~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
.++++.+.|+|++..... ....++.+..++ .|.|.++..+|+|.|+|.|.|..|..... +.
T Consensus 139 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~--~~ 216 (585)
T 2ocw_A 139 ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN--AD 216 (585)
T ss_pred CCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccce--EE
Confidence 766567999998754210 012344444433 69999999999999999999988875444 44
Q ss_pred EEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEE-cCCC---ccC---------CcccEEEe----cc
Q psy535 146 VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQ-RRDG---VAL---------PKNRVKIV----GG 207 (460)
Q Consensus 146 v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~-~~~~---~~~---------~~~~~~~~----~~ 207 (460)
|.|..++ |... .+..|+.+.|.|.+. ...+. +.+.|. +++. ..+ ...++... ++
T Consensus 217 l~V~~~~-----p~~~-~~~~G~~v~l~C~~~--~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 288 (585)
T 2ocw_A 217 LQVLKPE-----PELV-YEDLRGSVTFHCALG--PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDG 288 (585)
T ss_pred EEEccCC-----Ccee-EEcCCCcEEEEEEcC--CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCc
Confidence 5555443 2222 567899999999972 22223 688996 6431 111 12333332 33
Q ss_pred --eEEEccccceeceEEEEEEecccceee-----eeeEEEEecCCCC--CCCceeeeeecceEEEEeecCCCCCCCceee
Q psy535 208 --NITIEGLRRVDFGYYECVVSNEVATIV-----QAAQLVVEGTQPH--APYNITGVATEFSVTLEWLPGYSGGPDLKQN 278 (460)
Q Consensus 208 --~l~i~~~~~~~~g~y~C~a~n~~g~~~-----~~~~l~v~~~~p~--~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~ 278 (460)
.|.|.++...|.|.|+|.|.|. |... ....|.|..++.. .|..+ ....+..+.|.|.. .+.+.+...
T Consensus 289 ~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~-~~~~G~~v~l~C~~--~~~p~p~i~ 364 (585)
T 2ocw_A 289 SFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVV-KGVAGSSVAVLCPY--NRKESKSIK 364 (585)
T ss_pred EEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcce-EEEeCCcEEEEEec--CCCCCccEE
Confidence 6999999999999999999995 4433 6667777653221 12222 23356678899884 344444322
Q ss_pred -EEEEEE--ecC--CCC----------eeeeecc---CCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccC
Q psy535 279 -YVIWYR--EQG--NKD----------WLPIPVT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG 340 (460)
Q Consensus 279 -~~~~~~--~~~--~~~----------~~~~~~~---~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~ 340 (460)
++.|++ ++. ... ....... ..+...|.|.++...+.|.|+|.| |..|....+..+.+....
T Consensus 365 ~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~ 443 (585)
T 2ocw_A 365 YWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGE 443 (585)
T ss_pred EEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCc
Confidence 235666 332 000 0011111 112235999999999999999999 988876555556655332
Q ss_pred CCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535 341 PKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420 (460)
Q Consensus 341 ~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (460)
+....|..+.+. ....+.|.+.......+ ...+.|.|..++.-..... .... ...+.... ...
T Consensus 444 p~~~~~~~~~v~-~G~~v~L~C~~~~~~~~-~p~~~v~W~k~g~~~~~~~------~~~~--------~~~~~~~~-~~~ 506 (585)
T 2ocw_A 444 PNLKVPGNVTAV-LGETLKVPCHFPCKFSS-YEKYWCKWNNTGCQALPSQ------DEGP--------SKAFVNCD-ENS 506 (585)
T ss_pred cccccCCceeEe-cCCcEEEEEEecCCCCC-CccEEEEEeecCceeeecc------CCCC--------CcceEEec-Ccc
Confidence 222334443332 24578888876533212 2235677776653110000 0000 00001100 012
Q ss_pred CcceEEECCCCcCceEEEEEEEeecCCCCCC
Q psy535 421 GSTQITINRLTPATTYEFQVVGKNELGDGML 451 (460)
Q Consensus 421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~ 451 (460)
....+.|.++.....-.++..|.|..|.+..
T Consensus 507 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 537 (585)
T 2ocw_A 507 RLVSLTLNLVTRADEGWYWCGVKQGHFYGET 537 (585)
T ss_pred cEEEEEECCCCcccCeEEEEEeEeCCCccEE
Confidence 2357888888888888888999999987643
No 10
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-32 Score=266.83 Aligned_cols=348 Identities=20% Similarity=0.230 Sum_probs=250.6
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCC-CCeEEEEEEEcCCCCcceeeEEEEEe-
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQGRYTCTPYNAHGTQGSSGQMEVLV- 148 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~g~~~~~~~~~v~v- 148 (460)
..++.|.|.+.|.|.+ .+.|.++|..+... ..+.+.|..+... .++.|+|.+.+..|.... ..+.+..
T Consensus 91 ~g~l~v~c~~~g~P~p-~i~W~k~g~~~~~~--------~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~-~~v~~~~~ 160 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLG-NPIWNISGDPTRTW--------NRAELAISTFWPNFYQVIFEVITSGHQGYLAI-DEVKVLGH 160 (731)
T ss_dssp SEEEEEEEEETTCCCC-SEEEEECCCCCSSC--------EEEEEEECCCTTSCEEEEEEEEECSSCCEEEE-CCBEEESS
T ss_pred cceEEEEEecCCCCcc-ceeEEEeCCcCCce--------eEEEEEEeecCCCceEEEEEEEecCCceEEEE-eeEEeeec
Confidence 4578999999998876 79999999876421 1123455444222 347788877666665432 2233332
Q ss_pred --eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeE-EEc-CCCccCCcccEE-E----ecceEEEccccceec
Q psy535 149 --RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT-WQR-RDGVALPKNRVK-I----VGGNITIEGLRRVDF 219 (460)
Q Consensus 149 --~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~-W~~-~~~~~~~~~~~~-~----~~~~l~i~~~~~~~~ 219 (460)
..+|.+. .+... .+..|+.++|.|.+ .|.|.|.+. |.+ .++..+...... + ..+.|.|.++...|.
T Consensus 161 ~~~~~p~~~-~~~~~-~v~~G~~v~l~C~~---~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~ 235 (731)
T 2v5y_A 161 PCTRTPHFL-RIQNV-EVNAGQFATFQCSA---IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDA 235 (731)
T ss_dssp CCSSSCEEC-CCCCE-EEETTSCEEEEEEE---ESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTC
T ss_pred ccccccccc-cccce-EEeCCCcEEEEEEe---CCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccC
Confidence 2566665 44443 78899999999999 799999888 772 244444322211 1 135799999999999
Q ss_pred eEEEEEEecccce-eeeeeEEEEecCCCCCCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeecc
Q psy535 220 GYYECVVSNEVAT-IVQAAQLVVEGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297 (460)
Q Consensus 220 g~y~C~a~n~~g~-~~~~~~l~v~~~~p~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (460)
|.|+|.|.|..|. .+....|.|.. +|.+|.... .......+.|.|.++...+..++..|.+.|+..+ ..|......
T Consensus 236 g~Y~c~A~n~~G~~~s~~~~l~V~~-~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~-~~~~~~~~~ 313 (731)
T 2v5y_A 236 GKYRCMIRTEGGVGISNYAELVVKE-PPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTAS-GSWNDRQPV 313 (731)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEEC-CCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESS-SSCEEEEEC
T ss_pred eEEEEEEECCCCCcceeeEEEEEec-CCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECC-CCceEEecc
Confidence 9999999999998 66667777764 444443332 2345678999999765544455679999998753 456654432
Q ss_pred CCCCceEEEccCccCccEEEEEEEE--cCCCCCCCCCcEEEEccCCCC-CCCcceEEEeec-ceEEEEecCCCCC--Ccc
Q psy535 298 PPGSTQITINRLTPATTYEFQVVGK--NELGDGMLSNIVVVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPLER--ASL 371 (460)
Q Consensus 298 ~~~~~~~~i~~l~~~~~~~~~~~a~--n~~G~~~~s~~~~~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~~~--~~~ 371 (460)
....+.|.+|.+++.|.|+|.|. |..|.+.+|..+.+.+....| .+|.++.+...+ +++.|+|++|... ++.
T Consensus 314 --~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~ 391 (731)
T 2v5y_A 314 --DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCH 391 (731)
T ss_dssp --CSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSS
T ss_pred --CcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccce
Confidence 45889999999999999999999 999999999989888877655 789999988876 6999999998643 457
Q ss_pred ceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee-eccCCCCcceEEECCCCcCceEEEEEEEeecCCCCC
Q psy535 372 IQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP-IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM 450 (460)
Q Consensus 372 i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~ 450 (460)
+.+|.|+|+..+.- ....|.. ..........++|.+|.|++.|.|+|.|.|..|.|+
T Consensus 392 ~~~y~v~y~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~ 449 (731)
T 2v5y_A 392 SYNLTVHYCYQVGG----------------------QEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE 449 (731)
T ss_dssp SCEEEEEEEEESSS----------------------SEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE
T ss_pred eeeEEEEEEEccCC----------------------CCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC
Confidence 88999999975420 0001111 112335678899999999999999999999999984
Q ss_pred CCceeEeecC
Q psy535 451 LSNIVVVKTK 460 (460)
Q Consensus 451 ~s~~~~~~T~ 460 (460)
|..+.++|.
T Consensus 450 -S~~~~~~T~ 458 (731)
T 2v5y_A 450 -SQELIVQTD 458 (731)
T ss_dssp -CCCEEEECC
T ss_pred -CceEEEEcc
Confidence 888888773
No 11
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=9.2e-34 Score=269.73 Aligned_cols=323 Identities=18% Similarity=0.181 Sum_probs=221.5
Q ss_pred CcccCcccceEEEeeCCeEEEeecCCCCCe-eEEEEEEeCCCCcceeeeEEEEe----cCCeeEEcceeeeecceeeEEE
Q psy535 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSG-LYMCEVSNGIGEPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVV 76 (460)
Q Consensus 2 ~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l 76 (460)
|++....+.|+.+..++.|.|.+++.+|+| .|+|.|.|..+...+..+.|.|. .+|.+...+....+.+|+++.|
T Consensus 152 ~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L 231 (524)
T 2ec8_A 152 QGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV 231 (524)
T ss_dssp SSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEE
T ss_pred CCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEE
Confidence 556667788999988899999999999999 99999999877655667888886 6888888888888999999999
Q ss_pred EEEEecCCCCCeEEEeeCCeec--CccccccE----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535 77 QCHIKANPTFQYVTWTKDKRLL--EPYQTKDI----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK 150 (460)
Q Consensus 77 ~C~~~~~~~~~~v~W~~~~~~~--~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~ 150 (460)
.|.+.+.|.+..++|++++..+ .......+ .....+.|.|.++..+|+|.|+|.|.|..|.... .+.|.|..
T Consensus 232 ~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~--~~~l~V~~ 309 (524)
T 2ec8_A 232 TCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV--TTTLEVVD 309 (524)
T ss_dssp EEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEE--EEEEEEES
T ss_pred EEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEE--EEEEEEec
Confidence 9999998876559999999873 22111111 1233467999999999999999999998887644 66777778
Q ss_pred CCceeeCCCc--ccccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCCcc-cEEE--------ecceEEEcccccee
Q psy535 151 PPAFTIKPEA--MYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKN-RVKI--------VGGNITIEGLRRVD 218 (460)
Q Consensus 151 ~p~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~~~-~~~~--------~~~~l~i~~~~~~~ 218 (460)
+|.+...+.. ...+..|+.++|.|.+ .+.|.|. +.|++++....... +... ....|.|.++...|
T Consensus 310 ~p~~~~~~~~~~~~~v~~G~~v~l~C~~---~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 386 (524)
T 2ec8_A 310 KGFINIFPMINTTVFVNDGENVDLIVEY---EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386 (524)
T ss_dssp SCEEEEEESSCSEEEECTTCCEEEEEEE---EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGG
T ss_pred cCceEeecCCCceEEEcCCCcEEEEEEE---eecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCccc
Confidence 8887766542 3368899999999998 7889998 99999655443332 2221 12479999999999
Q ss_pred ceEEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC-------e
Q psy535 219 FGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD-------W 291 (460)
Q Consensus 219 ~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 291 (460)
.|.|+|.|.|..|.....+.|.|..+ | ........... .|.|.. .+.|.+. +.|+++++... .
T Consensus 387 ~G~Y~C~a~N~~g~~~~~~~l~V~~~-P---~i~~~~~~~~g-~l~C~~--~g~P~p~---i~W~~~~~~~~~~~~~~~~ 456 (524)
T 2ec8_A 387 GGTYTFLVSNSDVNAAIAFNVYVNTK-P---EILTYDRLVNG-MLQCVA--AGFPEPT---IDWYFCPGTEQRCSASVLP 456 (524)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEECEE-E---EEEEEECCSSS-CEEEEE--EEESCCE---EECCCC----------CCC
T ss_pred CeEEEEEEEecCceEEEEEEEEEecC-C---eEeecccCcCc-EEEEEE--EeecCCE---EEEEECCCcccccccccCC
Confidence 99999999999999888888888642 2 22111111112 777763 3445443 67777643210 0
Q ss_pred ---eeeeccCCCCceEE----EccCccCccEEEEEEEEcCCCCCCCCCcEEEEcc
Q psy535 292 ---LPIPVTPPGSTQIT----INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339 (460)
Q Consensus 292 ---~~~~~~~~~~~~~~----i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~ 339 (460)
............+. +......+.|.|+|.|.|.+|....+..+.+...
T Consensus 457 ~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~ 511 (524)
T 2ec8_A 457 VDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511 (524)
T ss_dssp CCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC---
T ss_pred CCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecC
Confidence 00001111222232 4444468999999999999998777777777644
No 12
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=6.9e-34 Score=261.78 Aligned_cols=315 Identities=23% Similarity=0.384 Sum_probs=228.6
Q ss_pred ccceEEEeeCCeEEEeec-----CCCCCeeEEEEEEeCC-CCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535 8 LETRVVIKKDGTLVINPV-----GSDDSGLYMCEVSNGI-GEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 8 ~~~r~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
.+.|+.+..+|+|.|.++ +.+|+|.|+|.|.+.. +...+..+.|.|..++.+...+....+.+|+++.|.|.+.
T Consensus 67 ~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~ 146 (403)
T 3laf_A 67 MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVI 146 (403)
T ss_dssp SCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEE
T ss_pred CcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEc
Confidence 467888888899999988 6789999999999653 4334566788888888887778888899999999999998
Q ss_pred cCCCCCeEEEeeCCeecCcc-ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCce------
Q psy535 82 ANPTFQYVTWTKDKRLLEPY-QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF------ 154 (460)
Q Consensus 82 ~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~------ 154 (460)
+.|.+ .+.|++++..+... ...+.....++.|.|.++..+|+|.|+|.+.|..+.. .+..+.+.+..+|.+
T Consensus 147 ~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~~l~v~~~p~~~~~~~~ 224 (403)
T 3laf_A 147 GDPMP-TIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTR-TGNEAEVRILSDPGLHRQLYF 224 (403)
T ss_dssp CSSCC-EEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCC-BCCCEEEEEECCCCCCEEEEE
T ss_pred ccCCC-eEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCce-eccceeEEEecCCCcccCceE
Confidence 88766 89999999887532 3345555667789999999999999999999987654 233445555555532
Q ss_pred eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE-ecceEEEccccceeceEEEEEEecccce
Q psy535 155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 155 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
...+... .+..|+.++|.|.+ .+.|.+.+.|++++..... ..+... .+..|.|.++...|.|.|+|.|.|..|.
T Consensus 225 ~~~~~~~-~~~~g~~~~l~C~~---~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 300 (403)
T 3laf_A 225 LQRPSNV-IAIEGKDAVLECCV---SGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN 300 (403)
T ss_dssp EECCCCE-EEETTSCEEECCEE---EEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred ecCCCce-EecCCCcEEEEEEc---CCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCc
Confidence 2334433 57789999999999 6888999999995543322 222322 3567999999999999999999999999
Q ss_pred eeeeeEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCceEEEccC
Q psy535 233 IVQAAQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGSTQITINRL 309 (460)
Q Consensus 233 ~~~~~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l 309 (460)
......+.|..+|. ..|.... ...+..+.|.|.. .+.+.+. +.|++++..... ..... .....|.|.++
T Consensus 301 ~~~~~~l~V~~~p~~~~~~~~~~-~~~g~~v~l~C~~--~g~p~p~---v~W~~~g~~~~~~~~~~~--~~~~~L~i~~v 372 (403)
T 3laf_A 301 ISASAELTVLVPPWFLNHPSNLY-AYESMDIEFECAV--SGKPVPT---VNWMKNGDVVIPSDYFQI--VGGSNLRILGV 372 (403)
T ss_dssp EEEEEEEEEEEEEEEEECCCCEE-CCTTCCEEECCEE--EEESCCE---EEEEETTEECCCSSSEEE--ETTTEEEESSC
T ss_pred eEEEEEEEEECCCcEeecCcceE-EecCCeEEEEEEE--eeccCCE---EEEEECCEECCCCCcEEE--ecCccEEEecc
Confidence 88888888765321 1222222 2345578888874 3344442 677776542110 00111 13467999999
Q ss_pred ccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535 310 TPATTYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 310 ~~~~~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
...+.|.|+|.|.|..|....+..+.+
T Consensus 373 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V 399 (403)
T 3laf_A 373 VKSDEGFYQCVAENEAGNAQSSAQLIV 399 (403)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccccCEEEEEEEEcCCceEEEEEEEEE
Confidence 999999999999999997655544444
No 13
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=1.1e-33 Score=258.97 Aligned_cols=310 Identities=18% Similarity=0.251 Sum_probs=223.1
Q ss_pred cceEEEeeCCeEEEeecCCCC------CeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535 9 ETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 9 ~~r~~~~~~~~L~i~~~~~~d------~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
.....+..+|+|.|.+++.+| +|.|+|.|.|..|...+..+.|.|..+|.+...+....+.+|++++|.|.+.+
T Consensus 50 ~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~ 129 (388)
T 2v5m_A 50 PGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 129 (388)
T ss_dssp TTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCT
T ss_pred CCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcC
Confidence 334455577899999999997 99999999999887556778888888888777777788899999999999988
Q ss_pred CCC--CCeEEEeeCCeecCcc---ccccEEEeecCeEEEeecCCCCC-eEEEEEEEcCCCCcce-e-eEEEEEeeCCC--
Q psy535 83 NPT--FQYVTWTKDKRLLEPY---QTKDIVVMQNGSLLFTRVNQNHQ-GRYTCTPYNAHGTQGS-S-GQMEVLVRKPP-- 152 (460)
Q Consensus 83 ~~~--~~~v~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~-G~y~C~~~~~~g~~~~-~-~~~~v~v~~~p-- 152 (460)
.+. .+.+.|++++..+... ...++....++.|.|.+++.+|+ |.|+|.+.|..+.... + ....+.|..+.
T Consensus 130 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~ 209 (388)
T 2v5m_A 130 FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 209 (388)
T ss_dssp TTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSC
T ss_pred CCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcC
Confidence 754 2579999998776321 23566667778999999999999 9999999987643321 1 11223344331
Q ss_pred ---ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC------CcccEEEecceEEEccccceeceEEE
Q psy535 153 ---AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL------PKNRVKIVGGNITIEGLRRVDFGYYE 223 (460)
Q Consensus 153 ---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~~~g~y~ 223 (460)
.+.........+..|+.++|.|.+ .+.|.+.+.|++++.... ...+....++.|.|.++...|.|.|+
T Consensus 210 ~~p~~~~~~~~~~~v~~G~~v~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 286 (388)
T 2v5m_A 210 SAPRTPALVQKPLELMVAHTISLLCPA---QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 286 (388)
T ss_dssp EEEECCSSCCCCEEEETTSCEEECCCC---EEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEE
T ss_pred CCCcCccccCCceEEeeCCcEEEEEEC---CCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEE
Confidence 111111111246789999999998 688999999998543221 23344556778999999999999999
Q ss_pred EEEecccceeeeeeEEEEecCCCC--CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCC
Q psy535 224 CVVSNEVATIVQAAQLVVEGTQPH--APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301 (460)
Q Consensus 224 C~a~n~~g~~~~~~~l~v~~~~p~--~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (460)
|.|.|..|.......|.|..++.. .|... ....+..+.|.|.. .+.+.+. +.|++++... ....
T Consensus 287 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~-~v~~g~~~~l~C~~--~g~p~p~---i~W~~~g~~i--------~~~~ 352 (388)
T 2v5m_A 287 CVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGRPAVFTCQY--TGNPIKT---VSWMKDGKAI--------GHSE 352 (388)
T ss_dssp EEEECSSCEEEEEEEEEEEEEEEEEEESSEE-EECTTSCEEEEEEE--EEECCCE---EEEEETTEEC--------SCCS
T ss_pred EEEecCCCceeEEEEEEEeCCCccccCCCcE-EecCCCCEEEEEEe--ccccCCe---EEEEECCEEC--------ccCC
Confidence 999999999888888887653211 11111 22345678888874 3344442 6777764321 1245
Q ss_pred ceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE
Q psy535 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335 (460)
Q Consensus 302 ~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~ 335 (460)
..|.|.++...+.|.|+|.|.|..|....+..+.
T Consensus 353 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 386 (388)
T 2v5m_A 353 SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386 (388)
T ss_dssp SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEE
Confidence 6899999999999999999999999765554443
No 14
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=240.79 Aligned_cols=270 Identities=20% Similarity=0.333 Sum_probs=212.4
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ecC--eEEEeecCCCCCeEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNG--SLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~d~G~y~C~ 130 (460)
.+|.|...|....+.+|++++|.|.+.+.|.+ .++|++++..+.... .++... .++ .|.|.++..+|+|.|+|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 80 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCC-EEEEEETTEECCCCS-SSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCC-eEEEEECCEEcccCC-CeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence 46888888888999999999999999998765 899999999886432 233322 233 799999999999999999
Q ss_pred EEcCCCCcceeeEEEEEeeCCCceeeC-----CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe
Q psy535 131 PYNAHGTQGSSGQMEVLVRKPPAFTIK-----PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV 205 (460)
Q Consensus 131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~-----~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 205 (460)
|.|..|.. +..+.|.|..+|.+... +... .+..|+.+.|.|.+ .+.|.+.+.|++++.......++...
T Consensus 81 a~n~~g~~--~~~~~l~V~~~p~~~~~~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~p~i~W~~~~~~~~~~~~~~~~ 154 (305)
T 2nzi_A 81 ATNQGGSV--SGTASLEVEVPAKIHLPKTLEGMGAV-HALRGEVVSIKIPF---SGKPDPVITWQKGQDLIDNNGHYQVI 154 (305)
T ss_dssp EEETTEEE--EEEEEEEECEEEEECCCHHHHSSCCE-EEETTCCEEEEEEE---EEESCCEEEEEESSSBCCSSSSCEEE
T ss_pred EEcCCCCc--cceEEEEEecCCccCCCccccccccE-EecCCCEEEEEEEE---CCCCCCEEEEEECCEECCCCCcEEEE
Confidence 99988764 44555556555544322 1222 56789999999999 78899999999955544344444432
Q ss_pred ----cceEEEcc-ccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeE
Q psy535 206 ----GGNITIEG-LRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNY 279 (460)
Q Consensus 206 ----~~~l~i~~-~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~ 279 (460)
...|.|.+ +...|.|.|+|.|.|..|.......+.+.. +|.+|..+.. ......+.|+|.++...+..++..|
T Consensus 155 ~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~-~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y 233 (305)
T 2nzi_A 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD-VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNY 233 (305)
T ss_dssp ECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEB-CCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEE
T ss_pred EcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEec-CCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEE
Confidence 34789998 999999999999999999999888888875 5667766654 3567789999998766666667899
Q ss_pred EEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE
Q psy535 280 VIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335 (460)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~ 335 (460)
.+.++......|...... ....+.|.+|.+.+.|.|+|.|.|..|.+.+|....
T Consensus 234 ~v~~~~~~~~~w~~~~~~--~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~ 287 (305)
T 2nzi_A 234 IVEKCATTAERWLRVGQA--RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSE 287 (305)
T ss_dssp EEEEEETTSCCEEEEEEE--SSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCC
T ss_pred EEEEecCCCCccEECccc--cCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCC
Confidence 999998887888876544 367899999999999999999999999998887654
No 15
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=1.7e-34 Score=263.34 Aligned_cols=313 Identities=23% Similarity=0.343 Sum_probs=215.6
Q ss_pred cceEEEeeCCeEEEeec-CCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE-cceeeeecceeeEEEEEEEecCCCC
Q psy535 9 ETRVVIKKDGTLVINPV-GSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-TPTVQYLPFRLQGVVQCHIKANPTF 86 (460)
Q Consensus 9 ~~r~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~ 86 (460)
+.|+.+ .+|+|.|.++ +.+|+|.|+|.|.|..|...+....|.|...+.+.. .+....+.+|+.+.|.|.+....+.
T Consensus 54 ~~~~~~-~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~ 132 (384)
T 3kld_A 54 DFRYSV-VDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGE 132 (384)
T ss_dssp --CEEE-ETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESC
T ss_pred CccEEE-ECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCC
Confidence 456665 5778888876 789999999999999987656677777765444332 2344677889999999976433333
Q ss_pred CeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee---eEEEEEe-----eCCCceeeC-
Q psy535 87 QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS---GQMEVLV-----RKPPAFTIK- 157 (460)
Q Consensus 87 ~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~---~~~~v~v-----~~~p~~~~~- 157 (460)
+.+.|++++.++.. ...++....++.|.|.++..+|+|.|+|.|.|..+..... ..+.+.. ..+|.+...
T Consensus 133 ~~~~W~~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~ 211 (384)
T 3kld_A 133 LSYAWIFNEYPSYQ-DNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF 211 (384)
T ss_dssp EEEEEEETTEECCC-SSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEEC
T ss_pred eEEEEEECCCCCEe-eccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecC
Confidence 47999999988753 2233333456789999999999999999999987653211 1222211 123333332
Q ss_pred CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc-cEEEecceEEEccccceeceEEEEEEecccceeeee
Q psy535 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 158 ~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 236 (460)
+... .+..|+.+.|.|.+ .|.|.|.+.|++.++..+... +....++.|.|.++..+|+|.|+|.|.|..|.....
T Consensus 212 ~~~~-~~~~G~~v~l~C~~---~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 287 (384)
T 3kld_A 212 PETV-PAEKGTTVKLECFA---LGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAK 287 (384)
T ss_dssp CSEE-EEETTSCEEEEEEE---EEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CCce-EecCCCcEEEEEEE---eecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence 3333 57889999999999 789999999998666555432 222235689999999999999999999999998888
Q ss_pred eEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCceEEEccCccCc
Q psy535 237 AQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGSTQITINRLTPAT 313 (460)
Q Consensus 237 ~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~ 313 (460)
..|.|...|. ..+... ....+..+.|.|.. .+.+.+. +.|++++..... ..... ....|.|.++...|
T Consensus 288 ~~l~v~~~P~~~~~~~~~-~v~~g~~v~l~C~~--~g~P~p~---i~W~k~g~~l~~~~~~~~---~~~~L~i~~v~~~D 358 (384)
T 3kld_A 288 GQLTFYAQPNWVQIINDI-HVAMEESVFWECKA--NGRPKPT---YRWLKNGDPLLTRDRIQI---EQGTLNITIVNLSD 358 (384)
T ss_dssp EEEEEEEEEEEEECCCCE-EECTTCCEEEECEE--EEESCCE---EEEEETTEECCCBTTEEE---ETTEEEESSCCGGG
T ss_pred EEEEEecCCccccCCCce-EecCCCCEEEEeEC--CccCCCe---EEEEECCEECCCCccEEE---eCCEEEEeecChhh
Confidence 8887765321 112222 22345677888874 4445543 678876542111 01111 23479999999999
Q ss_pred cEEEEEEEEcCCCCCCCCCcEEE
Q psy535 314 TYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 314 ~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
.|.|+|.|.|..|....+..|.+
T Consensus 359 ~G~Y~C~A~N~~G~~~~~a~L~V 381 (384)
T 3kld_A 359 AGMYQCVAENKHGVIFSSAELSV 381 (384)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEE
T ss_pred CEEEEEEEEeCCceEEeceEEEE
Confidence 99999999999997666655555
No 16
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=2.7e-33 Score=255.76 Aligned_cols=312 Identities=19% Similarity=0.250 Sum_probs=217.4
Q ss_pred cceEEEeeCCeEEEeecCC-CCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE-cceeeeecceeeEEEEEEEec-CCC
Q psy535 9 ETRVVIKKDGTLVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-TPTVQYLPFRLQGVVQCHIKA-NPT 85 (460)
Q Consensus 9 ~~r~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~~~ 85 (460)
+.|+.+ .+++|.|.++.. +|+|.|+|.|.|..|...+..+.|.|..++.+.. .+....+.+|+++.|.|.+.+ .|.
T Consensus 53 ~~~~~~-~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~ 131 (382)
T 1cs6_A 53 DSRYRL-VAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPA 131 (382)
T ss_dssp TSSEEE-ETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESC
T ss_pred CccEEe-eCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCC
Confidence 567777 578999999997 9999999999998887555567888876555433 345567889999999999644 444
Q ss_pred CCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcce---eeEEEEEee------CCCcee
Q psy535 86 FQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS---SGQMEVLVR------KPPAFT 155 (460)
Q Consensus 86 ~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~---~~~~~v~v~------~~p~~~ 155 (460)
+.+.|++++.++......+.... .++.|.|.++..+|+|.|+|.+.|..|.... +..+.+.+. .+|.+.
T Consensus 132 -~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~ 210 (382)
T 1cs6_A 132 -LSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK 210 (382)
T ss_dssp -CEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEE
T ss_pred -cEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCcee
Confidence 48999999887543233333333 3468999999999999999999987653222 122333322 245554
Q ss_pred eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeee
Q psy535 156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 235 (460)
........+..|+.++|.|.+ .+.|.+.+.|+++++.. .. ........|.|.++...|.|.|+|.|.|..|....
T Consensus 211 ~~~~~~~~~~~G~~v~l~C~~---~g~p~~~i~W~~~~~~~-~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 285 (382)
T 1cs6_A 211 AKFPADTYALTGQMVTLECFA---FGNPVPQIKWRKLDGSQ-TS-KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY 285 (382)
T ss_dssp ECCCSEEEEETTCCEEEECEE---EEESCCEEEEEECCSCC-SC-CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred ccCCCceEEeCCCeEEEEEEE---ccCCCCEEEEEECCccc-cc-EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEE
Confidence 432223367899999999998 68889999999966543 22 22234567999999999999999999999999888
Q ss_pred eeEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCceEEEccCccC
Q psy535 236 AAQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGSTQITINRLTPA 312 (460)
Q Consensus 236 ~~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~ 312 (460)
...|.|..+|. ..+... ....+..+.|.|.. .+.+.+. +.|++++..... ..... ....|.|.++...
T Consensus 286 ~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~--~g~p~p~---v~W~~~g~~~~~~~~~~~---~~~~L~i~~v~~~ 356 (382)
T 1cs6_A 286 QGRIIIHAQPDWLDVITDT-EADIGSDLRWSCVA--SGKPRPA---VRWLRDGQPLASQNRIEV---SGGELRFSKLVLE 356 (382)
T ss_dssp EEEEEEEEEEEEEECCCCE-EEETTCCEEEECEE--EEESCCE---EEEEETTEECCCCSSEEE---ETTEEEESSCCGG
T ss_pred EEEEEEecCCCcccCCCcc-EEcCCCeEEEEEEe--eeecCCE---EEEEECCEECCCCceEEE---ECCEEEECcCCcc
Confidence 88887764321 111111 22345678888874 3344443 677776542111 01111 2347999999999
Q ss_pred ccEEEEEEEEcCCCCCCCCCcEEE
Q psy535 313 TTYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 313 ~~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
+.|.|+|.|.|..|....+..+.+
T Consensus 357 d~G~Y~C~a~N~~G~~~~~~~l~V 380 (382)
T 1cs6_A 357 DSGMYQCVAENKHGTVYASAELTV 380 (382)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCEEEEEEEEeCCCeEEEEEEEEE
Confidence 999999999999997655555544
No 17
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=9e-32 Score=236.17 Aligned_cols=241 Identities=21% Similarity=0.358 Sum_probs=192.8
Q ss_pred CcccCcccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEE
Q psy535 2 NTKVGSLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 2 ~~~~~~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
+++....+.|+.+..+| +|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..+|.+...+....+.+|+.+.|.|
T Consensus 41 ~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C 120 (291)
T 2wim_A 41 QGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 120 (291)
T ss_dssp TCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECC
T ss_pred CCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEE
Confidence 45556667888888776 899999999999999999999988765677888888888877777777889999999999
Q ss_pred EEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCC
Q psy535 79 HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP 158 (460)
Q Consensus 79 ~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~ 158 (460)
.+.+.|.+ .+.|++++..+......++....++.|.|.++..+|+|.|+|.+.|..+.......+.+.+..+|.+...+
T Consensus 121 ~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~ 199 (291)
T 2wim_A 121 RVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQ 199 (291)
T ss_dssp CCBCSSCC-EEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSC
T ss_pred EEccCCCC-EEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCc
Confidence 99988765 79999999888765566777777889999999999999999999998766556667778888888877655
Q ss_pred Cc-ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cceEEEccccceeceEEEEEEecccceeee
Q psy535 159 EA-MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 159 ~~-~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 235 (460)
.. ...+..|+.+.|.|.+ .+.|.+.+.|++++..+....+.... +..|.|.++...|.|.|+|.|.|..|....
T Consensus 200 ~~~~~~~~~g~~~~l~C~~---~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~ 276 (291)
T 2wim_A 200 KSFNATAERGEEMTFSCRA---SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 276 (291)
T ss_dssp SEEECCSSSCCEEEEECBC---CCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEE
T ss_pred ccccceecCCCeEEEEEEe---ecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceee
Confidence 42 2357889999999999 78899999999955444444444443 457999999999999999999999999999
Q ss_pred eeEEEEecCCC
Q psy535 236 AAQLVVEGTQP 246 (460)
Q Consensus 236 ~~~l~v~~~~p 246 (460)
+..+.|..+++
T Consensus 277 ~~~l~v~~~~~ 287 (291)
T 2wim_A 277 QAFLQVFVQHH 287 (291)
T ss_dssp EEEEEC-----
T ss_pred eEEEEEEEecc
Confidence 99998876444
No 18
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-30 Score=260.64 Aligned_cols=398 Identities=17% Similarity=0.228 Sum_probs=260.2
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD 94 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~ 94 (460)
+.|.|.+++.+|+|.|+|.|.|..|.. .....|.|. .+|.+...+....+.+|+++.|.|.+.+.|.+ .++|+++
T Consensus 389 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p-~v~W~~~ 466 (816)
T 3dmk_A 389 SVLRIESVKKEDKGMYQCFVRNDRESA-EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP-EISWELD 466 (816)
T ss_dssp SEEEESSCCGGGCEEEEEEEECSSCEE-EECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCC-EEEEEET
T ss_pred CEEEEcCCCHHHCEEEEEEEECCCCcE-EEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCC-EEEEEEC
Confidence 379999999999999999999988764 556677773 57777777777888999999999999998776 8999999
Q ss_pred CeecCccccccEEE----eecC----eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCC
Q psy535 95 KRLLEPYQTKDIVV----MQNG----SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV 166 (460)
Q Consensus 95 ~~~~~~~~~~~~~~----~~~~----~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~ 166 (460)
|..+... .++.. ..++ .|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|.+...+ .. .+..
T Consensus 467 g~~l~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~p~~~~~~-~~-~v~~ 540 (816)
T 3dmk_A 467 GKKIANN--DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE--HSAKLNVYGLPYIRQME-KK-AIVA 540 (816)
T ss_dssp TEECCSC--TTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEE--EEEEEEECSSCEECCCC-CE-EEET
T ss_pred CEECCCC--CCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEE--EEEEEEEecCCeeEccC-Ce-EEec
Confidence 9988642 22221 1122 599999999999999999999988754 45566667777554333 22 5778
Q ss_pred CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEcccc-ceeceEEEEEEeccccee-eeeeEEEEec
Q psy535 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLR-RVDFGYYECVVSNEVATI-VQAAQLVVEG 243 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~-~~~~~l~v~~ 243 (460)
|+.+.|.|.+ .+.|.+.+.|++++.......+... .+++|.|.++. ..|.|.|+|.|.|..|.. .....+.+..
T Consensus 541 G~~v~l~C~~---~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~ 617 (816)
T 3dmk_A 541 GETLIVTCPV---AGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617 (816)
T ss_dssp TCCEEEECCE---ECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEEC
T ss_pred CCeEEEEEEe---cCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEec
Confidence 9999999999 6888899999995544333334433 46789999997 689999999999998853 4455666654
Q ss_pred CCCCCCCce--eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC---eeeeeccCCCCceEEEccCccCccEEEE
Q psy535 244 TQPHAPYNI--TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD---WLPIPVTPPGSTQITINRLTPATTYEFQ 318 (460)
Q Consensus 244 ~~p~~p~~~--~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 318 (460)
+|...+... .....+..++|.|... +++++ .-+.|++++.... .............|.|.++...+.|.|+
T Consensus 618 ~p~~~~~~~~~~~~~~G~~v~L~C~~~--~~~~~--~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 693 (816)
T 3dmk_A 618 LPRIIPFAFEEGPAQVGQYLTLHCSVP--GGDLP--LNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFT 693 (816)
T ss_dssp CCCCBCCCCCSSCEESSCEEEEEEBCC--CSSSC--CEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEE
T ss_pred CCccccccccccccCCCCeEEEEEEEe--CCCCC--CEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEE
Confidence 333222111 1234567899999843 23332 1267777654321 1111112224567999999999999999
Q ss_pred EEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcc
Q psy535 319 VVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398 (460)
Q Consensus 319 ~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~ 398 (460)
|.|.|..|....+..+.+...+..-..|.+..+.. +..+.|...... .|.. .|.|..++.- +...
T Consensus 694 C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~-G~~v~l~C~~~g---~P~p--~i~W~k~~~~-------~~~~-- 758 (816)
T 3dmk_A 694 CHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQ-GSDAKVECKADG---FPKP--QVTWKKAVGD-------TPGE-- 758 (816)
T ss_dssp EEEECSSCEEEEEEEECEEEEEEEEECCCCEEEET-TCCEEEECEEEE---ESCC--EEECCEECSS-------STTC--
T ss_pred EEEEeCCccEEEEEEEEEEeCCceeeecccceecC-CCcEEEEEEEec---CCCC--eEEEEecCCC-------CCcc--
Confidence 99999999776666665543211112333333322 234445444321 1111 2344333210 0000
Q ss_pred cccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455 (460)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~ 455 (460)
+. ........ . .....+.|.++.....-.+++.|.|..|.+..+-..
T Consensus 759 -~~-~~~~~~~~---~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~ 805 (816)
T 3dmk_A 759 -YK-DLKKSDNI---R-----VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805 (816)
T ss_dssp -CB-CCCCBTTE---E-----EETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEE
T ss_pred -cc-ccccCCCE---E-----ecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEE
Confidence 00 00000000 0 012368889999888888899999999987544433
No 19
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=3.8e-32 Score=258.61 Aligned_cols=305 Identities=16% Similarity=0.196 Sum_probs=220.0
Q ss_pred eCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-C
Q psy535 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-D 94 (460)
Q Consensus 16 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~ 94 (460)
.+++|.|.+++.+|+|.|+|.|.| |. +..+.|.|..||.+...+....+.+|++++|.|.+.+.+ .+.++|++ +
T Consensus 78 ~~~~L~I~~~~~~D~G~Y~C~a~n--g~--~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~~v~W~~~~ 152 (524)
T 2ec8_A 78 KQNEWITEKAEATNTGKYTCTNKH--GL--SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE-VTNYSLKGCQ 152 (524)
T ss_dssp CSSEEEESSCCSTTCEEEEEEETT--SC--EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCC-CSCEEEECSS
T ss_pred ccceEEEcccchhhCEEEEEeecC--Cc--ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCc-cceEEEEccC
Confidence 346899999999999999999999 43 677888888877766677778888999999999998855 34799988 7
Q ss_pred CeecCccccccEEEeecCeEEEeecCCCCCe-EEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCe
Q psy535 95 KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG-RYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGES 169 (460)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~ 169 (460)
|..+. ...++....++.|.|.++..+|+| .|+|.|.|..+.. .+..+.|.|. .+|.+...+... .+..|+.
T Consensus 153 g~~l~--~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~p~i~~~~~~~-~v~~G~~ 228 (524)
T 2ec8_A 153 GKPLP--KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSV-LSEKFILKVRPAFKAVPVVSVSKASY-LLREGEE 228 (524)
T ss_dssp SCCCC--SSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CC-CCCCEECCEECCCCSCCEEECSCSEE-EEETTSC
T ss_pred CcCcC--CCCceeECCCccEEEeccchhhCCceEEEEEEECCceE-EEEEEEEEEEeCCCCCCcEEecCCcc-eEEcCCc
Confidence 87775 334555566788999999999999 9999999876654 2334555554 688888877766 7889999
Q ss_pred EEEEeeeeccCCCCCCe-eEEEcCCCcc-CC-cccE-------EEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 170 VDMHCEAQEAEGTQKPT-ITWQRRDGVA-LP-KNRV-------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 170 ~~l~C~~~~~~~~p~~~-~~W~~~~~~~-~~-~~~~-------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
+.|.|.+ .+.|.+. +.|++++... +. ..+. ......|.|.++...|.|.|+|.|.|..|.......|
T Consensus 229 v~L~C~~---~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 305 (524)
T 2ec8_A 229 FTVTCTI---KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305 (524)
T ss_dssp EEEEEEE---EESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEEE---ecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEE
Confidence 9999999 5778776 9999966542 21 1111 1234579999999999999999999999998888888
Q ss_pred EEecCCCCCC---C--ceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeee--eeccCC-----CCceEEEc
Q psy535 240 VVEGTQPHAP---Y--NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP--IPVTPP-----GSTQITIN 307 (460)
Q Consensus 240 ~v~~~~p~~p---~--~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~i~ 307 (460)
.|... |... . .......+..+.|.|.. .+.+.+. .+.|++++....... ...... ....|.|.
T Consensus 306 ~V~~~-p~~~~~~~~~~~~~v~~G~~v~l~C~~--~g~P~p~--~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 380 (524)
T 2ec8_A 306 EVVDK-GFINIFPMINTTVFVNDGENVDLIVEY--EAFPKPE--HQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLT 380 (524)
T ss_dssp EEESS-CEEEEEESSCSEEEECTTCCEEEEEEE--EEESCCC--EEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEEC
T ss_pred EEecc-CceEeecCCCceEEEcCCCcEEEEEEE--eecCCCc--EEEEEECCeeccCCccceeEEccCCCceeEEEEEEe
Confidence 88753 2111 1 01123345678899884 3334331 367777754321111 111111 13579999
Q ss_pred cCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535 308 RLTPATTYEFQVVGKNELGDGMLSNIVVVK 337 (460)
Q Consensus 308 ~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~ 337 (460)
++...+.|.|+|.|.|..|....+..+.+.
T Consensus 381 ~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 410 (524)
T 2ec8_A 381 RLKGTEGGTYTFLVSNSDVNAAIAFNVYVN 410 (524)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred ecCcccCeEEEEEEEecCceEEEEEEEEEe
Confidence 999999999999999999975555445443
No 20
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=8e-32 Score=247.30 Aligned_cols=305 Identities=19% Similarity=0.236 Sum_probs=208.3
Q ss_pred eCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE-ecCCCCCeEEEeeC
Q psy535 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKD 94 (460)
Q Consensus 16 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~ 94 (460)
.+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|...+.+...+....+.+|+++.|.|.+ .+.|.+ .+.|+++
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~-~v~W~~~ 138 (395)
T 1bih_A 60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKP-LITWKKR 138 (395)
T ss_dssp TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCC-EEEEEEE
T ss_pred CCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCC-eEEEEec
Confidence 45799999999999999999999988765445566666543323335566778899999999996 666665 8999998
Q ss_pred CeecCcc-----ccccEEEeecCeEEEeecCCCCCe---EEEEEEEcCCCCcceeeEEEEE-eeC----------CCcee
Q psy535 95 KRLLEPY-----QTKDIVVMQNGSLLFTRVNQNHQG---RYTCTPYNAHGTQGSSGQMEVL-VRK----------PPAFT 155 (460)
Q Consensus 95 ~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~~~~g~~~~~~~~~v~-v~~----------~p~~~ 155 (460)
+....+. ...++....++.|.|.++..+|+| .|+|.+.|..+........... +.. +|.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~- 217 (395)
T 1bih_A 139 LSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY- 217 (395)
T ss_dssp ETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE-
T ss_pred CCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee-
Confidence 6221111 145666677789999999999999 9999999988875443322211 111 1222
Q ss_pred eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEe----cceEEEccccceeceEEEEEEecc
Q psy535 156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIV----GGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+... .+..|+.+.|.|.+ .+.|.+.+.|++++...... .++... +..|.|.++...|.|.|+|.|.|.
T Consensus 218 -~~~~~-~~~~G~~v~l~C~~---~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 292 (395)
T 1bih_A 218 -VSKDM-MAKAGDVTMIYCMY---GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG 292 (395)
T ss_dssp -ECCSE-EEETTSCEEEEEEE---ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCS
T ss_pred -cCCce-EEECCCcEEEEEEe---ccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeC
Confidence 12233 57889999999999 78899999999955433221 222221 227999999999999999999999
Q ss_pred cceeee-eeEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEE
Q psy535 230 VATIVQ-AAQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306 (460)
Q Consensus 230 ~g~~~~-~~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 306 (460)
.|.... ...|.|..+|. ..|........+..+.|.|... +.+.+. +.|++++.......... ....|.|
T Consensus 293 ~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~--g~p~p~---v~W~~~g~~~~~~~~~~---~~~~L~i 364 (395)
T 1bih_A 293 VGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVT--GLPAPN---VVWSHNAKPLSGGRATV---TDSGLVI 364 (395)
T ss_dssp SSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEE--EESCCC---CEEEETTEECCSSSEEE---ETTEEEE
T ss_pred CCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEEC--cccCCe---eEEEECCEECCCCceEE---ECCEEEE
Confidence 988655 77777764221 1122212233456788888743 334443 67777654221111111 1238999
Q ss_pred ccCccCccEEEEEEEEcCCCCCCCCCcEE
Q psy535 307 NRLTPATTYEFQVVGKNELGDGMLSNIVV 335 (460)
Q Consensus 307 ~~l~~~~~~~~~~~a~n~~G~~~~s~~~~ 335 (460)
.++...+.|.|.|.|.|..|....+..+.
T Consensus 365 ~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 393 (395)
T 1bih_A 365 KGVKNGDKGYYGCRATNEHGDKYFETLVQ 393 (395)
T ss_dssp SSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred eeCCcccCEEEEEEEEccCCCceEEEEEE
Confidence 99999999999999999999765444443
No 21
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=4e-31 Score=232.04 Aligned_cols=235 Identities=20% Similarity=0.346 Sum_probs=190.9
Q ss_pred ccCcccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEE
Q psy535 4 KVGSLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCH 79 (460)
Q Consensus 4 ~~~~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~ 79 (460)
.+.....|+.+.. +++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|..+|.+...|....+.+|+++.|.|.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~ 123 (291)
T 1qz1_A 44 KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123 (291)
T ss_dssp BCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCE
T ss_pred ECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEE
Confidence 3445567777754 248999999999999999999999876557788889988998888888888999999999999
Q ss_pred EecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCC
Q psy535 80 IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159 (460)
Q Consensus 80 ~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~ 159 (460)
+.+.|.+ .+.|++++..+......++....++.|.|.++..+|+|.|+|.+.|..+.......+.|.+..+|.+...+.
T Consensus 124 ~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~ 202 (291)
T 1qz1_A 124 VVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQS 202 (291)
T ss_dssp EECSSCC-EEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCS
T ss_pred eccCCCC-EEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCccccccc
Confidence 9998766 799999999886655667777778899999999999999999999876555456677777777887776543
Q ss_pred c-ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc----cEEEe--cceEEEccccceeceEEEEEEecccce
Q psy535 160 A-MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN----RVKIV--GGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 160 ~-~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~----~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
. ...+..|+.+.|.|.+ .+.|.|.+.|++++....... +.... ...|.|.++...|.|.|+|.|.|..|.
T Consensus 203 ~~~~~~~~g~~v~l~C~~---~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 279 (291)
T 1qz1_A 203 IVNATANLGQSVTLVCDA---DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE 279 (291)
T ss_dssp EEEEETTSCCCEEEEEEE---EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred ccccccccCceEEEEEEE---EEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCc
Confidence 2 2357889999999999 688999999999544333221 33332 347999999999999999999999999
Q ss_pred eeeeeEEEEe
Q psy535 233 IVQAAQLVVE 242 (460)
Q Consensus 233 ~~~~~~l~v~ 242 (460)
....+.|.|.
T Consensus 280 ~~~~~~l~V~ 289 (291)
T 1qz1_A 280 QDASIHLKVF 289 (291)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEEE
Confidence 8888888775
No 22
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.98 E-value=1.1e-31 Score=246.26 Aligned_cols=295 Identities=14% Similarity=0.135 Sum_probs=183.3
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE-EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT-FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 97 (460)
+|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..+|.+. ..| ..+..|+.+.|.|.+.|.|.+ .|+|++++..
T Consensus 104 sL~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~~~~p--~~~~~~~~~~L~C~a~G~P~P-~i~W~k~~~~ 179 (423)
T 3qs7_E 104 SMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRRP--YFRKMENQDALVCISESVPEP-IVEWVLCDSQ 179 (423)
T ss_dssp EEEESSCCSSSCSEEEEEEEC--CEE-EEEEEEEEC-----CEEEE--EEEECSSSSCEEEEEEESSCC-EEEEEEC---
T ss_pred EEEEeecCcccCEEEEEEEEcCCCcE-EEEEEEEEecCccccccCC--cEeccCCceEEEEEEeeecCC-eEEEEECCCC
Confidence 69999999999999999999998875 667888887666543 222 233457778999999999876 8999998875
Q ss_pred cCcccc-ccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeee
Q psy535 98 LEPYQT-KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176 (460)
Q Consensus 98 ~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~ 176 (460)
+..... ....+.....+ +...|+|.|+|.|.|..|.... ..+.|.|..+|.+ .+.. ..+..|+.+.|.|.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~----l~~~d~G~Y~C~A~N~~G~~~~-~~~~l~V~~~p~~--~~~~-~~v~~G~~v~L~C~~ 251 (423)
T 3qs7_E 180 GESCKEESPAVVKKEEKV----LHELFGTDIRCCARNELGRECT-RLFTIDLNQTPQT--TLPQ-LFLKVGEPLWIRCKA 251 (423)
T ss_dssp ----------CEEECCSE----ECCCCSSCEEEEEECSSCEEEE-ECEEEESSSCCCS--STTE-EEEETTSCEEEEEEE
T ss_pred CccccccccccccccceE----EecccCeEEEEEEEcCCCCcce-eeEEEEEecCCcc--CCCc-eEEeCCCeEEEEEEE
Confidence 531100 00001111111 1678999999999999887633 5577777776654 2333 367889999999999
Q ss_pred eccCC-CCCCeeEEEcCCCccCCcccE----------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535 177 QEAEG-TQKPTITWQRRDGVALPKNRV----------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245 (460)
Q Consensus 177 ~~~~~-~p~~~~~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~ 245 (460)
.+ .|.+.+.|++++..+...... ....+.|.|.++...|+|.|+|.|.|. ......|.|...+
T Consensus 252 ---~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p 325 (423)
T 3qs7_E 252 ---VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG 325 (423)
T ss_dssp ---EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSC
T ss_pred ---EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCC
Confidence 55 677999999965543322111 223347999999999999999999998 5566677776432
Q ss_pred CC--CCC-ceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535 246 PH--APY-NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 322 (460)
Q Consensus 246 p~--~p~-~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~ 322 (460)
.. .|. .......+..+.|.|.. .+.|.+. +.|++++...... .........+........+.|.|.|.|.
T Consensus 326 ~i~~~~~~~~~~v~~G~~v~l~C~~--~g~P~p~---i~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~~D~G~YtC~A~ 398 (423)
T 3qs7_E 326 FINATNSSEDYEIDQYEEFCFSVRF--KAYPQIR---CTWTFSRKSFPCE--QKGLDNGYSISKFCNHKHQPGEYIFHAE 398 (423)
T ss_dssp EEEEC---CEECCCTTCCCCEEEEE--EEESCCE---EEEEETTEEEECB--CCBCSSSSEEEEECCCTTCCSCEEEEEE
T ss_pred cceEcCCCccEEecCCCeEEEEEEE--EEcCCCe---EEEEECCEECCCc--cccccCCcEEEEEecccccCEEEEEEEE
Confidence 11 111 11112334677888874 3334443 6777765321000 0000012223235567789999999999
Q ss_pred cCCCCCCCCCcEEEEc
Q psy535 323 NELGDGMLSNIVVVKT 338 (460)
Q Consensus 323 n~~G~~~~s~~~~~~~ 338 (460)
|..|....+..+.+..
T Consensus 399 N~~G~~~~s~~L~v~~ 414 (423)
T 3qs7_E 399 NDDAQFTKMFTLNIRS 414 (423)
T ss_dssp ETTEEEEEEEEEC---
T ss_pred cCCceEEEEEEEEEec
Confidence 9999765555555543
No 23
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.98 E-value=9.4e-30 Score=245.63 Aligned_cols=317 Identities=17% Similarity=0.263 Sum_probs=219.6
Q ss_pred ccceEEEeeCC------eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535 8 LETRVVIKKDG------TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 8 ~~~r~~~~~~~------~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
..+|+++..++ +|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..++ |....+.+|+++.|.|.+.
T Consensus 169 ~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~-----p~~~~~~~G~~v~l~C~~~ 242 (585)
T 2ocw_A 169 YTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQVLKPE-----PELVYEDLRGSVTFHCALG 242 (585)
T ss_pred ccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccc-cceEEEEEccCC-----CceeEEcCCCcEEEEEEcC
Confidence 46788888766 79999999999999999999988875 677888887643 3445577899999999984
Q ss_pred cCCCC-CeEEEe-eCCee---cCc-------cccccEEEee---cC--eEEEeecCCCCCeEEEEEEEcCCCCcce---e
Q psy535 82 ANPTF-QYVTWT-KDKRL---LEP-------YQTKDIVVMQ---NG--SLLFTRVNQNHQGRYTCTPYNAHGTQGS---S 141 (460)
Q Consensus 82 ~~~~~-~~v~W~-~~~~~---~~~-------~~~~~~~~~~---~~--~l~i~~~~~~d~G~y~C~~~~~~g~~~~---~ 141 (460)
+.+++ +.+.|+ ++|.. +.. ....++.... ++ .|.|.++..+|+|.|+|.|.|. |.... .
T Consensus 243 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~ 321 (585)
T 2ocw_A 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPI 321 (585)
T ss_pred CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCce
Confidence 43322 478997 88732 111 0123333332 34 6999999999999999999985 43321 2
Q ss_pred eEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCee----EEEc--CCC--ccCC---------cccEEE
Q psy535 142 GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI----TWQR--RDG--VALP---------KNRVKI 204 (460)
Q Consensus 142 ~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~----~W~~--~~~--~~~~---------~~~~~~ 204 (460)
..+.|.|..+|.+...+... .+..|+.+.|.|.+ .+.|.+.+ .|++ ++. .+.. ..++.+
T Consensus 322 ~~~~l~V~~~p~~~~~~~~~-~~~~G~~v~l~C~~---~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~ 397 (585)
T 2ocw_A 322 QAWQLFVNEESTIPRSPTVV-KGVAGSSVAVLCPY---NRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSL 397 (585)
T ss_pred eeEEEEEecccccccCCcce-EEEeCCcEEEEEec---CCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEE
Confidence 56677788888887777655 67899999999999 78888877 7988 543 2221 223333
Q ss_pred e----cce--EEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCC--CCceeeeeecceEEEEeecCCCCCCCce
Q psy535 205 V----GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHA--PYNITGVATEFSVTLEWLPGYSGGPDLK 276 (460)
Q Consensus 205 ~----~~~--l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~--p~~~~~~~~~~~~~l~w~~~~~~~~~~~ 276 (460)
. ++. |.|.++...|.|.|+|.| |..|.....+.|.|...+|.. |... ....+..+.|.|.......+.+
T Consensus 398 ~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~p- 474 (585)
T 2ocw_A 398 LEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNV-TAVLGETLKVPCHFPCKFSSYE- 474 (585)
T ss_pred eccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCce-eEecCCcEEEEEEecCCCCCCc-
Confidence 2 233 899999999999999999 888888888888887544432 2222 2345567999998542222222
Q ss_pred eeEEEEEEecCCCCee--------eeecc-CCCCceEEEccCccCccEEEEEEEEcCCCCCCCC-CcEEEEc
Q psy535 277 QNYVIWYREQGNKDWL--------PIPVT-PPGSTQITINRLTPATTYEFQVVGKNELGDGMLS-NIVVVKT 338 (460)
Q Consensus 277 ~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s-~~~~~~~ 338 (460)
...+.|++++...... ..... ......|.|.++...+.|.|+|.|.|..|.+... ..+.+..
T Consensus 475 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~ 546 (585)
T 2ocw_A 475 KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEE 546 (585)
T ss_pred cEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEe
Confidence 2346788876432110 01111 1123589999999999999999999999876533 4555553
No 24
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=99.98 E-value=5.2e-30 Score=225.60 Aligned_cols=271 Identities=21% Similarity=0.288 Sum_probs=194.2
Q ss_pred CCCcccccCCCCeEEEEeeeecc----CCCCCCeeEEEcCCCccCCcccEEEec---ceEEEccccceeceEEEEEEecc
Q psy535 157 KPEAMYQRKVGESVDMHCEAQEA----EGTQKPTITWQRRDGVALPKNRVKIVG---GNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l~C~~~~~----~~~p~~~~~W~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.|... .+..|++++|.|.+..+ .+.|.+.+.|+++ +..+...++...+ +.|.|.++...+ |.|.|.|.+.
T Consensus 10 ~P~~~-~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~-g~~i~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~ 86 (303)
T 1i1r_A 10 SPESP-VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTN-HFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNILTF 86 (303)
T ss_dssp ESSSC-EEETTCCEEEEEEECHHHHHHHTCCGGGEEEEET-TEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEET
T ss_pred ccCCc-eEeCCCCEEEEEEECCccccccCCChhheEEEEC-CEECChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccC
Confidence 44454 67899999999999310 1458899999995 5555544544433 369999998874 9999999874
Q ss_pred ccee--eeeeEEEEecCCCCCCCceeeeee-cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEE
Q psy535 230 VATI--VQAAQLVVEGTQPHAPYNITGVAT-EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306 (460)
Q Consensus 230 ~g~~--~~~~~l~v~~~~p~~p~~~~~~~~-~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 306 (460)
.+.. .....+.+. .+|.+|.++.+... ...++|+|.++...+. + ..|.++++..+...|.... .......+.|
T Consensus 87 g~~~~~~~~~~l~v~-~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~~-~-~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i 162 (303)
T 1i1r_A 87 GQLEQNVYGITIISG-LPPEKPKNLSCIVNEGKKMRCEWDGGRETHL-E-TNFTLKSEWATHKFADCKA-KRDTPTSCTV 162 (303)
T ss_dssp TTEEEEEEEEEEEEE-CCCCCCEEEEEEEETTSCCEEEEECCSCCSS-C-CEEEEEEEETTEECCCEEC-CSSCTTEEEC
T ss_pred CCcceEEEEEEEecc-CCCCCCeeeEEEECCCCcEEEEccCCCCCCC-C-cCEEEEEEecCCCCccCCC-cCCCceEEEE
Confidence 2222 223344444 47888888876444 3789999998877654 3 6899998865432222221 2235678999
Q ss_pred ccC-ccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee--c-ceEEEEecCCCCCCccceEEEEEEEE
Q psy535 307 NRL-TPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV--N-NGFVISWQPPLERASLIQYYLIKYRT 381 (460)
Q Consensus 307 ~~l-~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~--~-~~v~l~W~~~~~~~~~i~~y~i~~~~ 381 (460)
.+| .+...|.|+|.|.|..|.+.. ..+.+.... .+|.||.++.+... + +++.|+|++|...++++.+|+|+|+.
T Consensus 163 ~~L~~p~t~Y~f~V~A~N~~G~~~s-~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~ 241 (303)
T 1i1r_A 163 DYSTVYFVNIEVWVEAENALGKVTS-DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT 241 (303)
T ss_dssp SSCCCTTSCEEEEEEEEETTEEEEC-CCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEEEEEEE
T ss_pred CCcCcccccEEEEEEEEcCCCCccc-CCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCcccEEEEEEEEe
Confidence 999 899999999999999998753 334443322 35889999988754 3 68999999998777899999999998
Q ss_pred cCCeeeeccccCCCCcccccccceecCceeeeeeccC--CCCcceEEECCCCcCceEEEEEEEeecCCCCCCC---ceeE
Q psy535 382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT--PPGSTQITINRLTPATTYEFQVVGKNELGDGMLS---NIVV 456 (460)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s---~~~~ 456 (460)
.+. ..|..+... ....+.+.|.+|.|++.|.|+|+|.|..|.|++| +++.
T Consensus 242 ~~~-------------------------~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~ 296 (303)
T 1i1r_A 242 KDA-------------------------STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEAS 296 (303)
T ss_dssp TTC-------------------------SSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEE
T ss_pred CCC-------------------------CCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccc
Confidence 642 123332211 2456789999999999999999999999987665 5667
Q ss_pred eecC
Q psy535 457 VKTK 460 (460)
Q Consensus 457 ~~T~ 460 (460)
++|+
T Consensus 297 ~~T~ 300 (303)
T 1i1r_A 297 GITY 300 (303)
T ss_dssp EECC
T ss_pred eeCC
Confidence 7774
No 25
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.98 E-value=4.1e-30 Score=224.67 Aligned_cols=229 Identities=24% Similarity=0.415 Sum_probs=181.0
Q ss_pred CcccceEEEee--C-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcc-eeeeecceeeEEEEEEEe
Q psy535 6 GSLETRVVIKK--D-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP-TVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 6 ~~~~~r~~~~~--~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~ 81 (460)
...+.++++.. + ++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~ 124 (284)
T 2rik_A 46 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 124 (284)
T ss_dssp CCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEE
T ss_pred CcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceE-EEEEEEEccCCCcccccCCCceEecCCceEEEEEEEe
Confidence 33445555432 2 489999999999999999999988774 778899999988876554 345678899999999999
Q ss_pred cCCCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc
Q psy535 82 ANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160 (460)
Q Consensus 82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~ 160 (460)
+.|.+ .+.|++++..+......+.... ....|.|.++..+|+|.|+|.+.|..|.. ...+.|.|..+|.+...+..
T Consensus 125 g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~~~~ 201 (284)
T 2rik_A 125 GSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA--SSSTSLKVKEPPVFRKKPHP 201 (284)
T ss_dssp SSSCC-EEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEEECCCBCCSCCCC
T ss_pred eeCCC-EEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCce--eEEEEEEEecCCcceeCCCc
Confidence 88765 7999999998864332222221 22469999999999999999999988764 45667777889988877766
Q ss_pred ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec----ceEEEccccceeceEEEEEEecccceeeee
Q psy535 161 MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 161 ~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 236 (460)
. .+..|+.++|.|.+ .+.|.+.+.|++++.......+..... ..|.|.++...|.|.|+|.|.|..|.....
T Consensus 202 ~-~~~~g~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 277 (284)
T 2rik_A 202 V-ETLKGADVHLECEL---QGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277 (284)
T ss_dssp E-EECTTCCEEEEEEC---BSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred c-eecCCCeEEEEEEE---EecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEE
Confidence 5 67899999999999 788999999999655444444444332 368999999999999999999999999888
Q ss_pred eEEEEe
Q psy535 237 AQLVVE 242 (460)
Q Consensus 237 ~~l~v~ 242 (460)
..|.|.
T Consensus 278 ~~l~V~ 283 (284)
T 2rik_A 278 GSITLK 283 (284)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 888774
No 26
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.97 E-value=2.5e-31 Score=244.77 Aligned_cols=316 Identities=21% Similarity=0.282 Sum_probs=217.5
Q ss_pred ceEEEe-eCCeEEEe----ecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE-EcceeeeecceeeEEEEEEE-ec
Q psy535 10 TRVVIK-KDGTLVIN----PVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT-FTPTVQYLPFRLQGVVQCHI-KA 82 (460)
Q Consensus 10 ~r~~~~-~~~~L~i~----~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~-~~ 82 (460)
.|+.+. .+++|.|. +++.+|+|.|+|.|.|..|...+..+.|.|..+|.+. ..+....+.+|++++|.|.+ .+
T Consensus 64 ~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~ 143 (404)
T 3p3y_A 64 PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPG 143 (404)
T ss_dssp SSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCC
T ss_pred CcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCC
Confidence 444443 34577775 8899999999999999988765677888988776543 33455678899999999999 56
Q ss_pred CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCCcce-eeEEEEEeeC-------CCc
Q psy535 83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGTQGS-SGQMEVLVRK-------PPA 153 (460)
Q Consensus 83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~~~~-~~~~~v~v~~-------~p~ 153 (460)
.|.+ .+.|++++..... ...++....++.|.|.++..+| +|.|+|.+.|..+.... ...+.+.+.. +|.
T Consensus 144 ~p~~-~v~W~~~~~~~~~-~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~ 221 (404)
T 3p3y_A 144 LPSP-VIFWMSSSMEPIT-QDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPS 221 (404)
T ss_dssp SSCC-EEEEECTTSCBCC-CCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCC
T ss_pred CCCC-eEEEeCCCccccC-CCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCc
Confidence 5554 8999998765433 3456666677899999999999 59999999998775422 2233444432 333
Q ss_pred eeeCCC--cccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc-cEEEecceEEEccccceeceEEEEEEeccc
Q psy535 154 FTIKPE--AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGNITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 154 ~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
+..... ....+..|+.+.|.|.+ .+.|.+.+.|++++....... .....++.|.|.++...|.|.|+|.|.|..
T Consensus 222 ~~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 298 (404)
T 3p3y_A 222 FMYPQGTASSQMVLRGMDLLLECIA---SGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKM 298 (404)
T ss_dssp BSSSCSSEEEEEEETTSCEEEECCB---CCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSS
T ss_pred cccccCCCCCceEecCCCEEEEEEE---CCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCC
Confidence 322211 11247789999999998 788999999999554333222 222235689999999999999999999999
Q ss_pred ceeeeeeEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeee-eccCCCCceEEEc
Q psy535 231 ATIVQAAQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI-PVTPPGSTQITIN 307 (460)
Q Consensus 231 g~~~~~~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 307 (460)
|.......|.|..+|. ..|.... ...+..+.|.|.. .+.+.+. +.|++++........ .........|.|.
T Consensus 299 g~~~~~~~l~V~~~p~~~~~~~~~~-v~~g~~~~l~C~~--~g~p~p~---v~W~~~g~~~~~~~~~~~~~~~~~~L~i~ 372 (404)
T 3p3y_A 299 GSIRHTISVRVKAAPYWLDEPKNLI-LAPGEDGRLVCRA--NGNPKPT---VQWMVNGEPLQSAPPNPNREVAGDTIIFR 372 (404)
T ss_dssp CEEEEEEEEEEEEEEEEEECCCCEE-ECTTCCEEEECEE--EEESCCE---EEEEETTEEGGGSCCCTTEEEETTEEEES
T ss_pred CcEEEEEEEEEeCCCeeeccCCcce-eecCCcEEEEEEc--cccCCCc---eEEEECCEecCCCCCCceEEecCCEEEEe
Confidence 9988888888865321 1122222 2235678888874 3344443 677776542111000 0000023579999
Q ss_pred cCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535 308 RLTPATTYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 308 ~l~~~~~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
++...+.|.|+|.|.|..|....+..+.+
T Consensus 373 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 401 (404)
T 3p3y_A 373 DTQISSRAVYQCNTSNEHGYLLANAFVSV 401 (404)
T ss_dssp SCCSSCCCEEEEEEEETTEEEEEEEEEEE
T ss_pred ecCHHHCEEEEEEEEeCCCcEEEEEEEEE
Confidence 99999999999999999997655544443
No 27
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.97 E-value=2.8e-31 Score=249.96 Aligned_cols=290 Identities=14% Similarity=0.136 Sum_probs=193.9
Q ss_pred EeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCc
Q psy535 22 INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEP 100 (460)
Q Consensus 22 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~ 100 (460)
+..+..+|+|.|+|.|.|..|......+.|.|..+|.+ .|....+.+|+++.|.|.+. +.|.+ .|+|++++..+..
T Consensus 195 ~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p-~i~W~k~g~~l~~ 271 (527)
T 3qs9_E 195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGF-GLTWELENKALEE 271 (527)
T ss_dssp CSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCC-CEEEECSSSCCCG
T ss_pred eeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCe-EEEEEECCEECCC
Confidence 33456899999999999999886455577888777665 66678889999999999997 66655 7999999988754
Q ss_pred cccccE-------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc-ccccCCCCeEEE
Q psy535 101 YQTKDI-------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA-MYQRKVGESVDM 172 (460)
Q Consensus 101 ~~~~~~-------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~-~~~~~~g~~~~l 172 (460)
...... .....++|.|.++..+|+|.|+|.|.|. .+..+.|.|..+|.+...+.. ...+..|+.+.|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~-----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L 346 (527)
T 3qs9_E 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCF 346 (527)
T ss_dssp GGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCE
T ss_pred CceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-----CCceEEEEEEccCccccccCcccEEEcCCCeEEE
Confidence 211100 1123346999999999999999999886 455677777778876665532 236788999999
Q ss_pred EeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCce
Q psy535 173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI 252 (460)
Q Consensus 173 ~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~ 252 (460)
.|.+ .|.|.|.+.|++++..+....+.......|.|.++...|+|.|+|.|.|..|.....+.|.|.. +|...
T Consensus 347 ~C~~---~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~----~P~i~ 419 (527)
T 3qs9_E 347 SVRF---KAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR----KPQVL 419 (527)
T ss_dssp EEEE---EEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C----CCEEE
T ss_pred EEEE---EecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec----CCeEE
Confidence 9999 7899999999995443323322223455799999999999999999999999988888887764 22222
Q ss_pred eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC----------Ceeeee---ccCCCCceEEEccCccCccEEEEE
Q psy535 253 TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK----------DWLPIP---VTPPGSTQITINRLTPATTYEFQV 319 (460)
Q Consensus 253 ~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~i~~l~~~~~~~~~~ 319 (460)
... ....|.|.. .+.|.+. +.|++..+.. .|.... ..........|.-....+.|.|.|
T Consensus 420 ~~~---~~~~l~C~a--~g~P~p~---i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C 491 (527)
T 3qs9_E 420 AEA---SASQASCFS--DGYPLPS---WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC 491 (527)
T ss_dssp ECC---CCE---EEE--ECSSCCE---EEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEE
T ss_pred EeC---CCCEEEEEE--EEEcCCe---EEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEE
Confidence 211 123567763 4455543 6676654321 011100 000011223333333568999999
Q ss_pred EEEcCCCCCCCCCcE
Q psy535 320 VGKNELGDGMLSNIV 334 (460)
Q Consensus 320 ~a~n~~G~~~~s~~~ 334 (460)
.|.|.+|....+..+
T Consensus 492 ~A~N~~G~~~~~~~L 506 (527)
T 3qs9_E 492 CAYNSLGTSCETILL 506 (527)
T ss_dssp EEECSSCEEEEEEEC
T ss_pred EEEeCCCCceeEEEE
Confidence 999999976544444
No 28
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=244.40 Aligned_cols=293 Identities=13% Similarity=0.114 Sum_probs=184.9
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcce-eeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT-VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 97 (460)
+|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|. |.+...+. ......++.+.|.|.+.|.|.+ .|+|++++..
T Consensus 104 SL~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P-~i~W~~~~~~ 179 (527)
T 3qs9_E 104 SMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIR--NTLLYTLRRPYFRKMENQDALVCISESVPEP-IVEWVLCDSQ 179 (527)
T ss_dssp EEEESSCCSSSCSEEEEEEEC--CEE-EEEEEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCC-EEEEEEC---
T ss_pred EEEECcCChhhCeeEEEEEEeccccE-EEEEEEEEC--CceeeccCCCcEEecCCceEEEEEEceecCC-eEEEEECCCC
Confidence 59999999999999999999987653 334444443 33322222 2223456678899999999877 7999998876
Q ss_pred cCccccccEEEeecC--eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEee
Q psy535 98 LEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE 175 (460)
Q Consensus 98 ~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~ 175 (460)
+.... ..... ......+...|+|.|+|.|.|..|.... ..+.|.|..+|.+ .+... .+..|+.+.|.|.
T Consensus 180 ~~~~~-----~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~-~~~~l~V~~~p~~--~p~~~-~v~~G~~v~L~C~ 250 (527)
T 3qs9_E 180 GESCK-----EESPAVVKKEEKVLHELFGTDIRCCARNELGRECT-RLFTIDLNQTPQT--TLPQL-FLKVGEPLWIRCK 250 (527)
T ss_dssp ---------------CEEECCSEECCCCSSCEEEEEECSSCEEEE-ECEEEESSSCCCC--SCCEE-EECTTSCEEEEEE
T ss_pred Ccccc-----ccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccc-eEEEEEEeccCcc--CCCce-EEeCCCeEEEEEE
Confidence 53211 01111 1222335588999999999999887643 4567777777765 33333 6889999999999
Q ss_pred eeccCCCCCCeeEEEcCCCccCCcccE----------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535 176 AQEAEGTQKPTITWQRRDGVALPKNRV----------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245 (460)
Q Consensus 176 ~~~~~~~p~~~~~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~ 245 (460)
+. .+.|.+.+.|++++..+...... ......|.|.++...|+|.|+|.|.|. ......|.|...+
T Consensus 251 ~~--~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p 325 (527)
T 3qs9_E 251 AV--HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG 325 (527)
T ss_dssp EE--ESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--C
T ss_pred Ec--cCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccC
Confidence 83 38899999999965543322221 122346999999999999999999998 4556666665432
Q ss_pred C--CCCC-ceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535 246 P--HAPY-NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 322 (460)
Q Consensus 246 p--~~p~-~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~ 322 (460)
. ..+. .......+..+.|.|.. .+.|.+. +.|++++...... .........|.|.++...+.|.|.|.|.
T Consensus 326 ~i~~~~~~~~~~v~~G~~v~L~C~~--~g~P~p~---i~W~k~g~~l~~~--~~~~~~~~~L~I~~v~~~D~G~YtC~A~ 398 (527)
T 3qs9_E 326 FINATNSSEDYEIDQYEEFCFSVRF--KAYPQIR---CTWTFSRKSFPCE--QKGLDNGYSISKFCNHKHQPGEYIFHAE 398 (527)
T ss_dssp EEECCCSCCEECCCTTCCCCEEEEE--EEESCCE---EEEEETTEEEECB--CCBCSSSSEEEEECCCTTCCSCEEEEEE
T ss_pred ccccccCcccEEEcCCCeEEEEEEE--EecCCCE---EEEEECCEECcCC--cccccCCcEEEEecCCcccCEEEEEEEE
Confidence 1 1111 11122334567777774 3344443 6777764321100 0011245679999999999999999999
Q ss_pred cCCCCCCCCCcEEE
Q psy535 323 NELGDGMLSNIVVV 336 (460)
Q Consensus 323 n~~G~~~~s~~~~~ 336 (460)
|..|....+..+.+
T Consensus 399 N~~g~~~~~~~L~V 412 (527)
T 3qs9_E 399 NDDAQFTKMFTLNI 412 (527)
T ss_dssp ETTEEEEEEEEEC-
T ss_pred eCCCcEEEEEEEEE
Confidence 99986554444444
No 29
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=241.56 Aligned_cols=315 Identities=14% Similarity=0.111 Sum_probs=204.7
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCc--ceeeeEEEE----ecCCeeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEP--QAAQAYLNV----EFPAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
.++|+.+..++ +|.|.+++.+|+|.|+|.|.|..|.. ....+.|.| ..+|.+...+....+.+|+.+.|.|
T Consensus 57 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C 136 (523)
T 2rcj_C 57 VPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVC 136 (523)
T ss_pred cCCcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEE
Confidence 35788865443 89999999999999999999987532 234567888 3567777777766677899999999
Q ss_pred EEecCCCC-CeEEEeeCCeecCcccccc-EEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE--Ee
Q psy535 79 HIKANPTF-QYVTWTKDKRLLEPYQTKD-IVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV--LV 148 (460)
Q Consensus 79 ~~~~~~~~-~~v~W~~~~~~~~~~~~~~-~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v--~v 148 (460)
.+.+.+++ ..|+|+|+|..+....... .....+ +.|.|.++..+|+|.|+|.|.|..+.......+.+ .+
T Consensus 137 ~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~ 216 (523)
T 2rcj_C 137 LISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSAS 216 (523)
T ss_pred EeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCC
Confidence 99988654 4899999998875321110 001111 25999999999999999999998876544333221 12
Q ss_pred eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEEEcCCCccCC--cccEEE------ecceEEEcccccee
Q psy535 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITWQRRDGVALP--KNRVKI------VGGNITIEGLRRVD 218 (460)
Q Consensus 149 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~~~~--~~~~~~------~~~~l~i~~~~~~~ 218 (460)
..+|.+...+... .+..|+.+.|.|.+ .+. |.| .+.|++++..... ...... ....|.|.++...|
T Consensus 217 ~~~P~v~~~~~~~-~~~~G~~~~l~C~~---~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d 292 (523)
T 2rcj_C 217 TKGPSVFPLAPSS-KSTSGGTAALGCLV---KDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT 292 (523)
T ss_pred CcCCEEEecCCCc-ccccCCceEEEEEE---eceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC
Confidence 3455554332222 46789999999998 565 777 8999995543211 011111 12379999999999
Q ss_pred ceEEEEEEecccceeeeeeEEEEecCCC---CCCCceeeeeecceEEEEeecCCCCCCCc-eeeEEEEEEecCCCCeee-
Q psy535 219 FGYYECVVSNEVATIVQAAQLVVEGTQP---HAPYNITGVATEFSVTLEWLPGYSGGPDL-KQNYVIWYREQGNKDWLP- 293 (460)
Q Consensus 219 ~g~y~C~a~n~~g~~~~~~~l~v~~~~p---~~p~~~~~~~~~~~~~l~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 293 (460)
|.|+|.|.|..|.......+.+...|. .+|........+..+.|.|... +.+++ ...-+.|++++.......
T Consensus 293 -G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~--g~~p~~~~~~v~W~k~g~~l~~~~~ 369 (523)
T 2rcj_C 293 -QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVV--DVSHEDPQVKFNWYVDGVQVHNAKT 369 (523)
T ss_pred -ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEe--cccCCCCceEEEEEECCeEccCCcc
Confidence 999999999999866655554432211 1111111123456788988853 22211 012367888754321110
Q ss_pred -e-eccCCC----CceEEEccCccCccEEEEEEEEcCCCCCC
Q psy535 294 -I-PVTPPG----STQITINRLTPATTYEFQVVGKNELGDGM 329 (460)
Q Consensus 294 -~-~~~~~~----~~~~~i~~l~~~~~~~~~~~a~n~~G~~~ 329 (460)
. .....+ ...|.|..+...+.|.|.|.|.|..|...
T Consensus 370 ~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 411 (523)
T 2rcj_C 370 KPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAP 411 (523)
T ss_pred CCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCc
Confidence 0 001111 13477888888999999999999877553
No 30
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.97 E-value=4.9e-29 Score=217.86 Aligned_cols=270 Identities=21% Similarity=0.358 Sum_probs=196.8
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee-cCeEEEeecCCCCCeEEEEEEE
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
..||.+...|....+.+|++++|.|.+.+.|.+ .++|++++..+......++.... ...|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 81 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCC-EEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCC-EEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence 357888888988899999999999999988765 89999999988753332222222 3479999999999999999999
Q ss_pred cCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cce
Q psy535 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGN 208 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~ 208 (460)
|..|.. +..+.|.|..+|.+...+.....+..|+.+.|.|.+ .+.|.+.+.|++++.......+.... ...
T Consensus 82 n~~g~~--~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 156 (284)
T 2rik_A 82 NVAGKD--SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI---GGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156 (284)
T ss_dssp ETTEEE--EEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEE---ESSSCCEEEEEETTEECCCSSSEEEEEETTEEE
T ss_pred ECCceE--EEEEEEEccCCCcccccCCCceEecCCceEEEEEEE---eeeCCCEEEEEECCEECcCCCcEEEEEcCCEEE
Confidence 987764 556667778888877766554467899999999999 68899999999965544444433322 346
Q ss_pred EEEccccceeceEEEEEEecccceeeeeeEEEEecCCCC--CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEec
Q psy535 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH--APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ 286 (460)
Q Consensus 209 l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~--~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~ 286 (460)
|.|.++...|.|.|+|.+.|..|.......|.|..+|.. .|... ....+..+.|.|.. .+.+.+. +.|++++
T Consensus 157 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~v~l~C~~--~g~p~~~---v~W~~~~ 230 (284)
T 2rik_A 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV-ETLKGADVHLECEL--QGTPPFQ---VSWHKDK 230 (284)
T ss_dssp EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCE-EECTTCCEEEEEEC--BSSSCCE---EEEEETT
T ss_pred EEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcc-eecCCCeEEEEEEE--EecCCCE---EEEEECC
Confidence 999999999999999999999999888888888753221 12222 22345678999884 3444443 6777764
Q ss_pred CCC---CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535 287 GNK---DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 287 ~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
... ...... .......|.|.++...+.|.|.|.|.|..|....+..+.+
T Consensus 231 ~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 282 (284)
T 2rik_A 231 RELRSGKKYKIM-SENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282 (284)
T ss_dssp EEECBTTTEEEE-EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EECcCCCCEEEE-EcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEE
Confidence 321 101111 1113357899999999999999999999997654444443
No 31
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.97 E-value=4.6e-30 Score=232.44 Aligned_cols=267 Identities=16% Similarity=0.123 Sum_probs=193.0
Q ss_pred cccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535 7 SLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 7 ~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
...+|+.+.. +++|.|.+++.+|+|.|+|.|.|.. ..+.|.|.. +...|. ..+.+|++++|.|.+
T Consensus 50 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~-----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~ 120 (363)
T 1wio_A 50 KLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQK-----EEVQLLVFG---LTANSD-THLLQGQSLTLTLES 120 (363)
T ss_dssp TTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEE-----EEEEEEEEE---EEESSC-SSEESBSCEEEEEEC
T ss_pred ccccceeeeeccccCCeEEEEECCCCHHHCEEEEEEEEECC-----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEc
Confidence 3467887754 4589999999999999999999863 356677763 334443 456789999999999
Q ss_pred ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc
Q psy535 81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160 (460)
Q Consensus 81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~ 160 (460)
.+.|.+ .++|++++..+. ...+.|.|.++..+|+|.|+|.|.|..+.. ...+.|.|..+|... .
T Consensus 121 ~~~p~~-~v~W~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~--~~~~~l~v~~~p~~~---~- 184 (363)
T 1wio_A 121 PPGSSP-SVQCRSPRGKNI---------QGGKTLSVSQLELQDSGTWTCTVLQNQKKV--EFKIDIVVLAFQKAS---S- 184 (363)
T ss_dssp CTTCCC-CEEEECSSSCEE---------EESSEEEECSBCGGGCEECEEEEEETTEEE--EECCEECEECCSCSE---E-
T ss_pred CCCCCC-eEEEEcCCCccc---------ccceEEEEeeCChhcCCEEEEEEecCCCeE--EEEEEEEEecCCCCC---C-
Confidence 887665 799999886542 356789999999999999999999875443 444555555565433 2
Q ss_pred ccccCCCCeEEEEeeeeccCC-----CCCCeeEEEcCCCccCC--------cccEEE------------e--cceEEEcc
Q psy535 161 MYQRKVGESVDMHCEAQEAEG-----TQKPTITWQRRDGVALP--------KNRVKI------------V--GGNITIEG 213 (460)
Q Consensus 161 ~~~~~~g~~~~l~C~~~~~~~-----~p~~~~~W~~~~~~~~~--------~~~~~~------------~--~~~l~i~~ 213 (460)
...+..|+.+.|.|.+ .+ .|.|.+.|++++..... ..++.. . ...|.|.+
T Consensus 185 ~~~~~~G~~v~l~C~~---~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 261 (363)
T 1wio_A 185 IVYKKEGEQVEFSFPL---AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQ 261 (363)
T ss_dssp EEEEETBCCEEEECCC---CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESS
T ss_pred ceEEecCCEEEEEEEE---ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEcc
Confidence 2357789999999988 45 77889999995544333 233333 1 23799999
Q ss_pred ccceeceEEEEEEecc--cceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe
Q psy535 214 LRRVDFGYYECVVSNE--VATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW 291 (460)
Q Consensus 214 ~~~~~~g~y~C~a~n~--~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (460)
+...|+|.|+|.|.|. .|.....+.|.|... + +..+.|.|... +.+++. -.+.|++++....
T Consensus 262 v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v-~-----------g~~~~l~C~~~--g~p~p~-~~i~W~~~~~~~~- 325 (363)
T 1wio_A 262 ALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA-T-----------QLQKNLTCEVW--GPTSPK-LMLSLKLENKEAK- 325 (363)
T ss_dssp BCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEE-C-----------CCSSSEEEEEE--SSCCTT-CCEEEECSSSSCS-
T ss_pred CCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEe-c-----------CCCeeEEEEEc--cccCCC-ccEEEEeCCCcee-
Confidence 9999999999999999 898888888877631 1 34466777642 223321 1256777654321
Q ss_pred eeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535 292 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL 325 (460)
Q Consensus 292 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~ 325 (460)
....+.|.++...+.|.|+|.|.|..
T Consensus 326 --------~~~~l~i~~v~~~d~G~Y~C~a~~~~ 351 (363)
T 1wio_A 326 --------VSKREKAVWVLNPEAGMWQCLLSDSG 351 (363)
T ss_dssp --------EEESSSEEEESSCCSEEEEEEECSSS
T ss_pred --------eeeeeeeeeeccccceeEEEEEecCC
Confidence 12346778899999999999999753
No 32
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.97 E-value=1e-29 Score=231.76 Aligned_cols=223 Identities=26% Similarity=0.428 Sum_probs=172.3
Q ss_pred ceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcc--eeeeEEEEe-------cCCeeE-EcceeeeecceeeEEEEEE
Q psy535 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQ--AAQAYLNVE-------FPAKVT-FTPTVQYLPFRLQGVVQCH 79 (460)
Q Consensus 10 ~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~~l~v~-------~~p~~~-~~~~~~~~~~g~~~~l~C~ 79 (460)
.++....+|.|.|.+++.+|+|.|+|.|.|..+... .....+.+. .+|.+. ..|....+.+|+++.|.|.
T Consensus 149 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~ 228 (384)
T 3kld_A 149 RRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECF 228 (384)
T ss_dssp SEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEE
T ss_pred cEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEE
Confidence 334434457999999999999999999999876531 112223332 123332 3456677888999999999
Q ss_pred EecCCCCCeEEEeeC-CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCC
Q psy535 80 IKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP 158 (460)
Q Consensus 80 ~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~ 158 (460)
+.|.|.+ .+.|+++ +..+.. .......++.|.|.++..+|+|.|+|.|.|..|....... |.|..+|.+...+
T Consensus 229 ~~g~P~p-~i~W~k~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~--l~v~~~P~~~~~~ 302 (384)
T 3kld_A 229 ALGNPVP-TILWRRADGKPIAR---KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ--LTFYAQPNWVQII 302 (384)
T ss_dssp EEEESCC-EEEEEETTCCCCCT---TCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEE--EEEEEEEEEEECC
T ss_pred EeecCCC-cEEEEeCCCccccc---cceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEE--EEEecCCccccCC
Confidence 9998876 7999995 444432 2222334568999999999999999999999988655544 4555578777766
Q ss_pred CcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535 159 EAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 159 ~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
... .+..|+.+.|.|.+ .|.|.|.+.|++++..+....++...++.|.|.++...|+|.|+|.|.|..|....+..
T Consensus 303 ~~~-~v~~g~~v~l~C~~---~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 378 (384)
T 3kld_A 303 NDI-HVAMEESVFWECKA---NGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAE 378 (384)
T ss_dssp CCE-EECTTCCEEEECEE---EEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred Cce-EecCCCCEEEEeEC---CccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceE
Confidence 665 68899999999999 78999999999966555556677778889999999999999999999999999999988
Q ss_pred EEEe
Q psy535 239 LVVE 242 (460)
Q Consensus 239 l~v~ 242 (460)
|.|.
T Consensus 379 L~V~ 382 (384)
T 3kld_A 379 LSVI 382 (384)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8875
No 33
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.97 E-value=1.5e-29 Score=232.79 Aligned_cols=229 Identities=25% Similarity=0.483 Sum_probs=187.4
Q ss_pred cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe------eEEcceeeeecceeeEEEEEEE
Q psy535 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK------VTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
....++.+..+++|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..+|. +...+....+.+|++++|.|.+
T Consensus 166 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~ 245 (403)
T 3laf_A 166 PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV 245 (403)
T ss_dssp TTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE
T ss_pred CCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc
Confidence 4456777777889999999999999999999998877556678888876553 3445666778899999999999
Q ss_pred ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc
Q psy535 81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160 (460)
Q Consensus 81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~ 160 (460)
.+.|.+ .+.|++++..+.. ...+.....++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+..
T Consensus 246 ~~~p~~-~~~W~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~~~~ 321 (403)
T 3laf_A 246 SGYPPP-SFTWLRGEEVIQL-RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI--SASAELTVLVPPWFLNHPSN 321 (403)
T ss_dssp EEESCC-EEEEEETTEECCC-SSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEEEEEEEEECCCC
T ss_pred CCCCCC-eEEEEECCeeccC-CCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCce--EEEEEEEEECCCcEeecCcc
Confidence 998776 7999999998764 3345555667789999999999999999999988765 44555666678888877776
Q ss_pred ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 161 MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 161 ~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
. .+..|+.++|.|.+ .+.|.+.+.|++++.......+.... ++.|.|.++...|.|.|+|.|.|..|.......|
T Consensus 322 ~-~~~~g~~v~l~C~~---~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 397 (403)
T 3laf_A 322 L-YAYESMDIEFECAV---SGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397 (403)
T ss_dssp E-ECCTTCCEEECCEE---EEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred e-EEecCCeEEEEEEE---eeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEE
Confidence 5 68899999999999 78899999999966555455554443 5679999999999999999999999999999988
Q ss_pred EEec
Q psy535 240 VVEG 243 (460)
Q Consensus 240 ~v~~ 243 (460)
.|..
T Consensus 398 ~V~~ 401 (403)
T 3laf_A 398 IVPK 401 (403)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 8875
No 34
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.97 E-value=6.5e-30 Score=226.54 Aligned_cols=223 Identities=16% Similarity=0.187 Sum_probs=174.1
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 97 (460)
++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+..++.+.+.|.+.+..+++.+.|++++..
T Consensus 79 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~ 158 (313)
T 4fqp_A 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG 158 (313)
T ss_dssp CCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred eEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcc
Confidence 57999999999999999999765444446777888888888777777677778888999998764433448999999887
Q ss_pred cCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEE
Q psy535 98 LEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171 (460)
Q Consensus 98 ~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~ 171 (460)
+... .......+ +.|.|.++..+|+|.|+|.|.|..+.......+.|.|..+|.+.+.+.....+..|+.++
T Consensus 159 ~~~~--~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~ 236 (313)
T 4fqp_A 159 MPNT--SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEAT 236 (313)
T ss_dssp EEEE--EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEE
T ss_pred cccc--ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEE
Confidence 6421 11111112 248888999999999999999988877777788888888888876665544567889999
Q ss_pred EEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCC
Q psy535 172 MHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH 247 (460)
Q Consensus 172 l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~ 247 (460)
|.|.+ .|.|.| .+.|+++++ .+.. .....+++|.|.++...|+|.|+|.|.|..|....++.|.|...||.
T Consensus 237 l~C~~---~g~P~p~~v~W~~~~~-~l~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP~ 308 (313)
T 4fqp_A 237 LTCDA---RSNPEPTGYNWSTTMG-PLPP-FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPPH 308 (313)
T ss_dssp EEEEE---EEESCCCEEEEEETTB-SCCT-TEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC--
T ss_pred EEEEe---cCCCCCcEEEEEECCE-ECCC-ceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCCC
Confidence 99999 788888 699999554 4432 23446778999999999999999999999999999999999876554
No 35
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.97 E-value=5.5e-29 Score=232.31 Aligned_cols=277 Identities=15% Similarity=0.188 Sum_probs=189.5
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE-EcceeeeecceeeEEEEEEEecCCCCC--eEEEeeCC
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT-FTPTVQYLPFRLQGVVQCHIKANPTFQ--YVTWTKDK 95 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~ 95 (460)
.|.|.+++. |+| |+|.|.+..+. .+..+.|.|..+|.+. ..+....+.+|+++.|.|.+.+.++++ .|+|+|++
T Consensus 51 ~l~i~~v~~-d~g-Y~C~a~~~~~~-~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g 127 (450)
T 1z7z_I 51 VYELSNVQE-DSQ-PMCYSNCPDGQ-STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE 127 (450)
T ss_dssp EEEEEEECS-CBC-CEEEEEETTEE-EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred EEEEEeccc-CCe-eEEEEeCCCCc-ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCC
Confidence 799999987 999 99999765444 3677889998877765 566777889999999999999987654 79999999
Q ss_pred eecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce------eeEEEEEeeCC----CceeeCCCcccccC
Q psy535 96 RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS------SGQMEVLVRKP----PAFTIKPEAMYQRK 165 (460)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~------~~~~~v~v~~~----p~~~~~~~~~~~~~ 165 (460)
..+..... .....++.|.|.++..+|+|.|+|.|.|..|.... +....+.+... |.+.. + ..+.
T Consensus 128 ~~l~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~-~---~~v~ 201 (450)
T 1z7z_I 128 KELKREPA--VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-P---RVLE 201 (450)
T ss_dssp EEEEEEEC--CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC-C---SEEE
T ss_pred EEeecccc--cccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC-c---eeEE
Confidence 98863221 11122357999999999999999999998764321 12233334322 32221 1 2678
Q ss_pred CCCeEEEEeeeeccCCC-C--CCeeEEEcCCCccCCcccEEEecceEEEc---cccceece--EEEEEEecccceeeeee
Q psy535 166 VGESVDMHCEAQEAEGT-Q--KPTITWQRRDGVALPKNRVKIVGGNITIE---GLRRVDFG--YYECVVSNEVATIVQAA 237 (460)
Q Consensus 166 ~g~~~~l~C~~~~~~~~-p--~~~~~W~~~~~~~~~~~~~~~~~~~l~i~---~~~~~~~g--~y~C~a~n~~g~~~~~~ 237 (460)
.|+.+.|.|.+ .+. | .+.+.|++++. .+.. +.......+.+. ++...|.| .|+|.+.|..|......
T Consensus 202 ~G~~v~l~C~~---~g~~P~~~~~~~W~~~~~-~~~~-~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~ 276 (450)
T 1z7z_I 202 VDTQGTVVCSL---DGLFPVSEAQVHLALGDQ-RLNP-TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ 276 (450)
T ss_dssp TTSEEEEEEEE---ESCTTGGGCEEEEEETTE-ECCC-EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred eCCcEEEEEEe---eCCCCCCceEEEEeCCCE-eCCc-eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEE
Confidence 89999999999 566 6 78999999554 3333 344344333332 66889999 99999999999988888
Q ss_pred EEEEecCCCCCCCcee---eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCcc
Q psy535 238 QLVVEGTQPHAPYNIT---GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT 314 (460)
Q Consensus 238 ~l~v~~~~p~~p~~~~---~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 314 (460)
.|.|...++ |.... ....+..++|.|... +.+. +.| ++... . .......|.|..+...+.
T Consensus 277 ~l~V~~~~~--p~i~~~~~~v~~G~~v~l~C~~~----p~p~---i~W--~g~~~-----~-~~~~~~~L~i~~~~~~d~ 339 (450)
T 1z7z_I 277 TVTIYSFPA--PNVILTKPEVSEGTEVTVKCEAH----PRAK---VTL--NGVPA-----Q-PLGPRAQLLLKATPEDNG 339 (450)
T ss_dssp EEEEECCCC--CEEEESCSEEETTCEEEEEEEC-------------------------------CCCCCEEEECCGGGTT
T ss_pred EEEEecCCC--CeEecCCeeEeCCCcEEEEEecC----CCCE---eEE--CCEEc-----C-CCCceEEEEEecCcccCC
Confidence 888875332 22211 234566889999853 3222 344 22211 0 111345799999999999
Q ss_pred EEEEEEEEcCCC
Q psy535 315 YEFQVVGKNELG 326 (460)
Q Consensus 315 ~~~~~~a~n~~G 326 (460)
|.|.|.|.|..|
T Consensus 340 G~Y~C~a~n~~~ 351 (450)
T 1z7z_I 340 RSFSCSATLEVA 351 (450)
T ss_dssp CEEEEEEEEEET
T ss_pred ceEEEEEEcCCC
Confidence 999999997665
No 36
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Probab=99.97 E-value=1.3e-28 Score=217.68 Aligned_cols=264 Identities=19% Similarity=0.253 Sum_probs=188.9
Q ss_pred ccCCCCeEEEEeeeeccCCC-----CCCeeEEEcCCCccCCcccEE-Eec----ceEEEccccceeceEEEEEEecccce
Q psy535 163 QRKVGESVDMHCEAQEAEGT-----QKPTITWQRRDGVALPKNRVK-IVG----GNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~-----p~~~~~W~~~~~~~~~~~~~~-~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
.+..|++++|.|.+ .+. |.+.+.|++++. .+...+.. ..+ +.|.|.++...|+|.|.|.+.+..+.
T Consensus 11 ~v~~G~~v~l~C~~---~~~~~~~~~~~~i~W~~~g~-~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~ 86 (313)
T 2d9q_B 11 IVHLGDPITASCII---KQNCSHLDPEPQILWRLGAE-LQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ 86 (313)
T ss_dssp EECTTCCEEEEECC---CTTSCSSCSCSCCEEESSSC-BCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred EEcCCCCEEEEEEE---CCCCCCCCcccceEEEeCCE-ECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence 57899999999998 454 578999999544 44433222 122 46999999999999999999776555
Q ss_pred eeeeeEEEEecCCCCCCCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCC------CCeeeeeccCCCCceE
Q psy535 233 IVQAAQLVVEGTQPHAPYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGN------KDWLPIPVTPPGSTQI 304 (460)
Q Consensus 233 ~~~~~~l~v~~~~p~~p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 304 (460)
......|.+. .+|.+|.++.+... ...++++|.++.+++.+ ..|.+.++.... ..|..... ......+
T Consensus 87 ~~~~~~l~v~-~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~--~~Y~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 162 (313)
T 2d9q_B 87 ILDQVELRAG-YPPAIPHNLSCLMNLTTSSLICQWEPGPETHLP--TSFTLKSFKSRGNCQTQGDSILDCVP-KDGQSHC 162 (313)
T ss_dssp EEEEEEEEEC-CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC--CEEEEEEEECCTTSCSCCCCEEEECC-CTTCSEE
T ss_pred eEEEEEEccC-CCCCCCccceeeECCCCccEEEEecCCCCCCCc--eeEEEEEEecCCCcccCCcccccCCC-CCCCcEE
Confidence 4455666665 47888988876554 47999999988775543 469998876542 12332221 1133455
Q ss_pred EEc--cCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee-------cceEEEEecCCCCCCccceE
Q psy535 305 TIN--RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV-------NNGFVISWQPPLERASLIQY 374 (460)
Q Consensus 305 ~i~--~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~-------~~~v~l~W~~~~~~~~~i~~ 374 (460)
.+. +|.+...|.|+|.|.|..|.+. +..+.+.+.. .+|.||.++.+... .+++.|+|++|...+..+++
T Consensus 163 ~~~~~~L~~~~~Y~f~V~A~N~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~ 241 (313)
T 2d9q_B 163 SIPRKHLLLYQNMGIWVQAENALGTSM-SPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK 241 (313)
T ss_dssp EEEGGGCCSSSCEEEEEEEEETTEEEE-CCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEE
T ss_pred EECccccccceeEEEEEEEECCCCCcc-CccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeEE
Confidence 554 5999999999999999999763 4455565544 34889999988764 36899999998765555789
Q ss_pred EEEEEE-EcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCC---
Q psy535 375 YLIKYR-TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM--- 450 (460)
Q Consensus 375 y~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~--- 450 (460)
|+|+|+ ..+. ..|..+.......+.+.|.+|.|++.|.|||+|.|..|.|.
T Consensus 242 Y~v~y~~~~~~-------------------------~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~ 296 (313)
T 2d9q_B 242 CELRHKPQRGE-------------------------ASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSD 296 (313)
T ss_dssp EEEEEEESSSC-------------------------CCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCC
T ss_pred EEEEEccCCCC-------------------------CCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCC
Confidence 999999 4322 12333322234567899999999999999999999987765
Q ss_pred CCceeEeecC
Q psy535 451 LSNIVVVKTK 460 (460)
Q Consensus 451 ~s~~~~~~T~ 460 (460)
+|+++.++|.
T Consensus 297 wS~~~~~~T~ 306 (313)
T 2d9q_B 297 WSPSLELRTT 306 (313)
T ss_dssp CCCCEEECCC
T ss_pred CCCccceeCC
Confidence 6677777774
No 37
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.97 E-value=2.4e-29 Score=221.94 Aligned_cols=217 Identities=25% Similarity=0.460 Sum_probs=169.7
Q ss_pred eEEEeecCC-CCCeeEEEEEEeCCCCcceeeeEEEEecC-------CeeEEcceeeeecceeeEEEEEEEecCCCCCeEE
Q psy535 19 TLVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFP-------AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVT 90 (460)
Q Consensus 19 ~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~ 90 (460)
.|.|.+++. +|+|.|+|.|.|..|.. +..+.|.|..+ |.+...|....+.+|+++.|.|.+.+.|.+ .+.
T Consensus 64 ~L~i~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~ 141 (304)
T 2yd9_A 64 VLRIQPLRTPRDENVYECVAQNSVGEI-TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP-EIT 141 (304)
T ss_dssp EEEECSCCTTTTCSEEEEEEECSSCEE-CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCC-EEE
T ss_pred EEEEecccccCCCeEEEEEEECCCCeE-EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCC-eEE
Confidence 799999998 99999999999998874 77888998764 667777877888999999999999998776 799
Q ss_pred EeeCCeecCccc-cccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee-eEEEEEee-CCCceeeCCCcccccCCC
Q psy535 91 WTKDKRLLEPYQ-TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS-GQMEVLVR-KPPAFTIKPEAMYQRKVG 167 (460)
Q Consensus 91 W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~-~~~~v~v~-~~p~~~~~~~~~~~~~~g 167 (460)
|++++..+.... ..++....++.|.|.++..+|+|.|+|.|.|..|..... ..+.|.+. .+|.+...+... .+..|
T Consensus 142 W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~-~v~~G 220 (304)
T 2yd9_A 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSH-EIMPG 220 (304)
T ss_dssp EEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCB-CCCTT
T ss_pred EEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCce-EEcCC
Confidence 999999886432 234555667789999999999999999999988765433 45556543 567777777664 68899
Q ss_pred CeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 168 ESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 168 ~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
+.++|.|.+ .|.|.|.+.|++++..+............|.+.++ .|+|.|+|.|.|..|.......|.|..
T Consensus 221 ~~v~l~C~~---~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 291 (304)
T 2yd9_A 221 GNVNITCVA---VGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKS 291 (304)
T ss_dssp CCEEEEEEE---EEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC---
T ss_pred CeEEEEEEE---eeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence 999999999 68899999999955433333222222224666655 589999999999999999888888875
No 38
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.97 E-value=1.1e-29 Score=236.40 Aligned_cols=310 Identities=20% Similarity=0.224 Sum_probs=199.0
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEe
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
.++|+.+..++ +|.|.+++.+|+|.|+|.|.|..+......+.|.|.. +|.+...+......+|+.+.|.|.+.
T Consensus 62 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~ 141 (438)
T 1qgc_4 62 IPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLN 141 (438)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred ccCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEc
Confidence 45788887543 8999999999999999999998775435567777753 56665544333344677999999998
Q ss_pred cCCCCC-eEEEeeCCeecCccccccE--------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535 82 ANPTFQ-YVTWTKDKRLLEPYQTKDI--------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 82 ~~~~~~-~v~W~~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
+.++++ .|+|+|+|..+........ .....+.|.|.++..+|+|.|+|.|.|..+.... .+.+....++
T Consensus 142 g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~~~~ 219 (438)
T 1qgc_4 142 NFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI--VKSFNRNECE 219 (438)
T ss_dssp EEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE--EEEEETTC-C
T ss_pred cccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce--ecccccccce
Confidence 843333 7999999998764300000 0111346999999999999999999998776422 2333322222
Q ss_pred ceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEcCC-CccC------------------CcccEEEe------
Q psy535 153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQRRD-GVAL------------------PKNRVKIV------ 205 (460)
Q Consensus 153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~~~-~~~~------------------~~~~~~~~------ 205 (460)
.....+... .+..|+.++|.|.+ .+.| .+.+.|++++ +..+ ...++...
T Consensus 220 ~~~~~~~~~-~v~~G~~v~L~C~~---~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 295 (438)
T 1qgc_4 220 VMLVESGGG-LVKPGGSLKLSCTA---SGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKN 295 (438)
T ss_dssp CEEEEECCE-EECTTCCEEEEEEE---ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTT
T ss_pred eEEecCCce-EEecCCcEEEEEEE---cccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCC
Confidence 223333333 67899999999999 6777 6799999852 2111 12344333
Q ss_pred cceEEEccccceeceEEEEEEecccc-----eeeeeeEEEEecCCCCCCCceee-----eeecceEEEEeecCCCCC-CC
Q psy535 206 GGNITIEGLRRVDFGYYECVVSNEVA-----TIVQAAQLVVEGTQPHAPYNITG-----VATEFSVTLEWLPGYSGG-PD 274 (460)
Q Consensus 206 ~~~l~i~~~~~~~~g~y~C~a~n~~g-----~~~~~~~l~v~~~~p~~p~~~~~-----~~~~~~~~l~w~~~~~~~-~~ 274 (460)
...|.|.++...|+|.|+|.|.|..+ .......+.|...++.+|..... ...+..++|.|... +. |.
T Consensus 296 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~--g~~P~ 373 (438)
T 1qgc_4 296 TLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVK--GYFPE 373 (438)
T ss_dssp EEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEE--SCBSS
T ss_pred eEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEec--cccCC
Confidence 22799999999999999999998544 22234456665433333432211 23467899999843 32 32
Q ss_pred ceeeEEEEEEecCCCCeeee-eccCCC----CceEEEccCccCccEEEEEEEEcCCCCC
Q psy535 275 LKQNYVIWYREQGNKDWLPI-PVTPPG----STQITINRLTPATTYEFQVVGKNELGDG 328 (460)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~i~~l~~~~~~~~~~~a~n~~G~~ 328 (460)
+ -.+.|++++........ .....+ ...|.|.+....+ |.|.|.|.|..|..
T Consensus 374 ~--~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~ 429 (438)
T 1qgc_4 374 P--VTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST 429 (438)
T ss_dssp C--CEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTE
T ss_pred C--cEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCc
Confidence 2 13667666543221110 001111 1247787777777 99999999999853
No 39
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=222.01 Aligned_cols=231 Identities=16% Similarity=0.196 Sum_probs=172.9
Q ss_pred ccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE--EcceeeeecceeeEEEEEEE-
Q psy535 8 LETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT--FTPTVQYLPFRLQGVVQCHI- 80 (460)
Q Consensus 8 ~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~~- 80 (460)
..+|+.+.. +++|.|.+++.+|+|.|+|.|.+..+...+..+.+.+..+|.+. ..+.......|+.+.|.|.+
T Consensus 60 ~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~ 139 (308)
T 4fom_A 60 YQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAA 139 (308)
T ss_dssp TTTTEEESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEE
T ss_pred ccceEEeeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEec
Confidence 345666533 35899999999999999999998755444667778877766543 34455556678899999986
Q ss_pred ecCCCCCeEEEeeCCeecCccccc--cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCC
Q psy535 81 KANPTFQYVTWTKDKRLLEPYQTK--DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP 158 (460)
Q Consensus 81 ~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~ 158 (460)
.+.|.+ .|+|++++..+...... .......+.|.|..+..+|+|.|+|.|.|..+....+..+.|.|..+|.+...+
T Consensus 140 ~g~P~~-~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~ 218 (308)
T 4fom_A 140 TGKPVA-HIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTG 218 (308)
T ss_dssp EEBSCC-EEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBC
T ss_pred CCcCCc-eEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcc
Confidence 466655 89999999887532110 001112235999999999999999999999888777778888888888877766
Q ss_pred CcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 159 EAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 159 ~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
.....+..|+.++|.|.+ .|.|.| .+.|+++++.+. .......+..+.|.++...|+|.|+|.|.|..|....+.
T Consensus 219 ~~~~~~~~g~~v~l~C~~---~g~P~p~~v~W~k~~~~~~-~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~ 294 (308)
T 4fom_A 219 YDGNWFVGRKGVNLKCNA---DANPPPFKSVWSRLDGQWP-DGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQK 294 (308)
T ss_dssp CCSCEETTCCSCEEECCE---EEESCEEEEECCBSSSCCC-SSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEE
T ss_pred cceeeeeccccEEEEEEE---ecCCCCcEEEEEECCeECC-CcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEE
Confidence 655467788999999999 688888 699999665443 222211233456788999999999999999999999998
Q ss_pred EEEEec
Q psy535 238 QLVVEG 243 (460)
Q Consensus 238 ~l~v~~ 243 (460)
.|.|..
T Consensus 295 ~l~V~~ 300 (308)
T 4fom_A 295 VIYISD 300 (308)
T ss_dssp ECCEEC
T ss_pred EEEEEc
Confidence 888876
No 40
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.96 E-value=6.7e-28 Score=214.95 Aligned_cols=219 Identities=18% Similarity=0.228 Sum_probs=163.8
Q ss_pred eCCeEEEeecCCCCCe-eEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535 16 KDGTLVINPVGSDDSG-LYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD 94 (460)
Q Consensus 16 ~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~ 94 (460)
.+++|.|.+++.+|+| .|+|.|.|..|......+.+.+..+|.+...+....+.+|+++.|.|.+.+.|..+.++|+|+
T Consensus 87 ~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~ 166 (329)
T 3oq3_B 87 KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKN 166 (329)
T ss_dssp ETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEET
T ss_pred ecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEEC
Confidence 4679999999999999 999999998876433333344455666544444445677999999999999872348999999
Q ss_pred CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC--CCCccee--eEEEEEeeCCC----ceeeCCCcccccCC
Q psy535 95 KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA--HGTQGSS--GQMEVLVRKPP----AFTIKPEAMYQRKV 166 (460)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~--~g~~~~~--~~~~v~v~~~p----~~~~~~~~~~~~~~ 166 (460)
+..+.. ...++... ++.|.|.++..+|+|.|+|.|.|. .|..... ..+.|.|..+| .+. .+... .+..
T Consensus 167 ~~~l~~-~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~-~v~~ 242 (329)
T 3oq3_B 167 NQELII-DGTKYSQS-GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKI-NVTI 242 (329)
T ss_dssp TEECCC-SSSSEEEE-TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEE-EECT
T ss_pred CccCCC-CCceEecC-CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCee-EEec
Confidence 998853 23444433 788999999999999999999987 5544333 34667777666 222 45443 6889
Q ss_pred CCeEEEEeeeeccCCCC---CC-eeEEEcCCCccCCc-ccEEE--------ecceEEEccccceece-EEEEEEecccce
Q psy535 167 GESVDMHCEAQEAEGTQ---KP-TITWQRRDGVALPK-NRVKI--------VGGNITIEGLRRVDFG-YYECVVSNEVAT 232 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p---~~-~~~W~~~~~~~~~~-~~~~~--------~~~~l~i~~~~~~~~g-~y~C~a~n~~g~ 232 (460)
|+.++|.|.+ .+.| .+ .+.|++++...... .+... ....|.|.++...|.| .|+|.|.|..|.
T Consensus 243 G~~~~l~C~~---~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~ 319 (329)
T 3oq3_B 243 GEPANITCTA---VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD 319 (329)
T ss_dssp TSCEEEEEEE---EETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCE
T ss_pred CCCEEEEEEE---EECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCc
Confidence 9999999999 5666 67 89999966543332 21111 3457999999999999 999999999999
Q ss_pred eeeeeEEEE
Q psy535 233 IVQAAQLVV 241 (460)
Q Consensus 233 ~~~~~~l~v 241 (460)
......|.|
T Consensus 320 ~~~~~~l~v 328 (329)
T 3oq3_B 320 KTLTTTVVL 328 (329)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 888877765
No 41
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.96 E-value=7e-28 Score=211.33 Aligned_cols=270 Identities=19% Similarity=0.293 Sum_probs=191.1
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEee----cCeEEEeecCCCCCeEEEEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQ----NGSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~ 130 (460)
|+.+.+.|....+.+|++++|.|.+.+.++.+.++|++ +|..+.. ...++.... .+.|.|.++..+|+|.|+|.
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCS-SCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECcc-CCceEEEEEcCCCeEEEEEecCCCCCCEEEEEE
Confidence 56677888888899999999999999987555899999 7777754 233433332 34799999999999999999
Q ss_pred EEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEE-Eecc
Q psy535 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVK-IVGG 207 (460)
Q Consensus 131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~-~~~~ 207 (460)
+.|..|.. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+ .+.|.+.+.|++++..... ..+.. ..++
T Consensus 81 ~~n~~g~~-~~~~~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 155 (291)
T 1qz1_A 81 VTAEDGTQ-SEATVNVKIFQKLMFKNAPTPQ-EFKEGEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 155 (291)
T ss_dssp EECTTSCE-EEEEEEEEEECCSEEEECCSSE-EEETTSCEEECCEE---ECSSCCEEEEEETTSCSSTTCCTTEEECTTS
T ss_pred EEcCCCCe-eEEEEEEEeeccccccCCCCcc-cccCCCeEEEEEEe---ccCCCCEEEEEECCEEcccCCCceEEEccCC
Confidence 99987653 5677888888888888777665 68899999999999 6889999999996554432 22333 2456
Q ss_pred eEEEccccceeceEEEEEEeccccee--eeeeEEEEecCCCCC--CCc-eeeeeecceEEEEeecCCCCCCCceeeEEEE
Q psy535 208 NITIEGLRRVDFGYYECVVSNEVATI--VQAAQLVVEGTQPHA--PYN-ITGVATEFSVTLEWLPGYSGGPDLKQNYVIW 282 (460)
Q Consensus 208 ~l~i~~~~~~~~g~y~C~a~n~~g~~--~~~~~l~v~~~~p~~--p~~-~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~ 282 (460)
.|.|.++...|.|.|+|.+.|..+.. .....+.+..+|... +.. ......+..+.|.|.. .+.+.+. +.|
T Consensus 156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~--~g~p~p~---i~W 230 (291)
T 1qz1_A 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA--DGFPEPT---MSW 230 (291)
T ss_dssp CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEE--EEESCCE---EEE
T ss_pred cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEE--EEeCCCc---EEE
Confidence 89999999999999999999876432 334455554321110 111 1122345678888874 3344443 677
Q ss_pred EEecCCCCee-----eeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535 283 YREQGNKDWL-----PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 337 (460)
Q Consensus 283 ~~~~~~~~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~ 337 (460)
++++...... .... ......|.|.++...+.|.|.|.|.|..|....+..+.+.
T Consensus 231 ~~~g~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 231 TKDGEPIENEEEDDEKHIF-SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289 (291)
T ss_dssp EETTEECCCC--CCSSEEE-CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EECCEECcCCCCCCcceEE-cCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence 7765422111 1111 1245689999999999999999999999976555445443
No 42
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.9e-28 Score=212.76 Aligned_cols=215 Identities=17% Similarity=0.254 Sum_probs=168.9
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEE-eeCC
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTW-TKDK 95 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W-~~~~ 95 (460)
+++|.|.+++.+|+|.|+|.|.| |. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.+ |..+.++| +++|
T Consensus 56 ~~~L~i~~~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g 130 (290)
T 2o26_X 56 KNEWIQEKAEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDG 130 (290)
T ss_dssp SSEEEETTCCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTS
T ss_pred CceEEEeccCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCC
Confidence 36999999999999999999999 43 6788999988777666666778889999999999985 55258999 5688
Q ss_pred eecCccccccEEEeecCeEEEeecCCCCCe-EEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeE
Q psy535 96 RLLEPYQTKDIVVMQNGSLLFTRVNQNHQG-RYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESV 170 (460)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~ 170 (460)
..+.. ..++....++.|.|.++..+|+| .|+|.|.|..+.. .+..+.|.|. .+|.+...+... .+..|+.+
T Consensus 131 ~~l~~--~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~P~i~~~~~~~-~v~~G~~v 206 (290)
T 2o26_X 131 KSLPT--DLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWL-HSDKFTLKVREAIKAIPVVSVPETSH-LLKKGDTF 206 (290)
T ss_dssp CCCCT--TCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEE-ECCCEEEEEECCCCSCCEEECSCSBC-CCCTTCCE
T ss_pred cCCCC--CCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceE-EeEEEEEEEEeCCCCCCccccCCCcc-eEecCCcE
Confidence 77753 34555556678999999999999 9999999974442 3434555554 788888777766 78999999
Q ss_pred EEEeeeeccCCCCCCe-eEEEcCCCcc---CC-ccc-------EEEecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535 171 DMHCEAQEAEGTQKPT-ITWQRRDGVA---LP-KNR-------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 171 ~l~C~~~~~~~~p~~~-~~W~~~~~~~---~~-~~~-------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
+|.|.+ .+.|.|. +.|++++... +. ... .....+.|.|.++...|.|.|+|.|.|..|.......
T Consensus 207 ~l~C~~---~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 283 (290)
T 2o26_X 207 TVVCTI---KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT 283 (290)
T ss_dssp EEEEEE---EESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEE---ecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEE
Confidence 999999 6888886 9999966542 11 111 1123457999999999999999999999999988888
Q ss_pred EEEec
Q psy535 239 LVVEG 243 (460)
Q Consensus 239 l~v~~ 243 (460)
|.|..
T Consensus 284 l~V~~ 288 (290)
T 2o26_X 284 LKVVE 288 (290)
T ss_dssp ECC--
T ss_pred EEEEe
Confidence 87764
No 43
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.96 E-value=1e-27 Score=219.94 Aligned_cols=227 Identities=21% Similarity=0.382 Sum_probs=178.5
Q ss_pred cceEEEeeCCeEEEeecCCCCCe---eEEEEEEeCCCCcceeeeE--EEEecC--------CeeEEcceeeeecceeeEE
Q psy535 9 ETRVVIKKDGTLVINPVGSDDSG---LYMCEVSNGIGEPQAAQAY--LNVEFP--------AKVTFTPTVQYLPFRLQGV 75 (460)
Q Consensus 9 ~~r~~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~~--l~v~~~--------p~~~~~~~~~~~~~g~~~~ 75 (460)
+.|+.+..+|+|.|.+++.+|+| .|+|.|.|..+........ +.+..+ ....+.+....+.+|+.+.
T Consensus 152 ~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~ 231 (395)
T 1bih_A 152 DRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTM 231 (395)
T ss_dssp CTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEE
T ss_pred cccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEE
Confidence 67888888999999999999999 9999999988774222111 111111 0112235566788999999
Q ss_pred EEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 76 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
|.|.+.+.|.+ .+.|+++|..+......++.... ...|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..+|
T Consensus 232 l~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~~~P 309 (395)
T 1bih_A 232 IYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP-QKHSLKLTVVSAP 309 (395)
T ss_dssp EEEEEECSSCC-CCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC-EEEEEEEEEEEEE
T ss_pred EEEEeccCCCC-eEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCc-eEEEEEEEEEcCC
Confidence 99999998876 69999999988654333333211 1269999999999999999999988875 3346677777899
Q ss_pred ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccce
Q psy535 153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
.+...+.....+..|+.++|.|.+ .|.|.|.+.|++ ++..+...++...++.|.|.++...|.|.|+|.|.|..|.
T Consensus 310 ~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~v~W~~-~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 385 (395)
T 1bih_A 310 KYEQKPEKVIVVKQGQDVTIPCKV---TGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD 385 (395)
T ss_dssp EEEECCCSEEEECTTSCEEEECEE---EEESCCCCEEEE-TTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred ccccCCCcceEecCCCeEEEEEEE---CcccCCeeEEEE-CCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCC
Confidence 988887763468899999999999 688999999999 4555656677778889999999999999999999999999
Q ss_pred eeeeeEEEE
Q psy535 233 IVQAAQLVV 241 (460)
Q Consensus 233 ~~~~~~l~v 241 (460)
......|.|
T Consensus 386 ~~~~~~l~V 394 (395)
T 1bih_A 386 KYFETLVQV 394 (395)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEEE
Confidence 888887765
No 44
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.96 E-value=4.7e-28 Score=212.24 Aligned_cols=217 Identities=18% Similarity=0.246 Sum_probs=167.9
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CC
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DK 95 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~ 95 (460)
++|.|.+++.+|+|.|+|.+.+..+.. +..+.|.|..+|. +...+....+.+|+++.|.|.+.+.+.+..+.|++ ++
T Consensus 51 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~ 129 (289)
T 3ejj_X 51 STLTTRNATFKNTGTYRCTELEDPMAG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGG 129 (289)
T ss_dssp CEEEESSCCGGGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGG
T ss_pred cEEEEeeeccccCEEEEEEEeccCCcc-eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCC
Confidence 499999999999999999999887764 7888999987766 56677778889999999999999876654599986 66
Q ss_pred eecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC-CCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeE
Q psy535 96 RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA-HGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESV 170 (460)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~-~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~ 170 (460)
..+. ...++....++.|.|.++..+|+|.|+|.+.+. .+. .+..+.|.|. .+|.+...+... .+..|+.+
T Consensus 130 ~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~--~~~~~~l~V~~~~~~~p~i~~~~~~~-~~~~g~~~ 204 (289)
T 3ejj_X 130 RQVL--RKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRES--TSTGIWLKVNRVHPEPPQIKLEPSKL-VRIRGEAA 204 (289)
T ss_dssp EECC--TTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEE--ECCCEEEEEESSCCCCCEEEEESSSE-ECCSSSCE
T ss_pred eecC--CCccEEECCCCCEEEeecccccCEEEEEEEEeCCCcc--ccccEEEEEEECCCCCCeEEecCCce-EEEeCCcE
Confidence 6654 345566667788999999999999999999843 333 3445566665 678887777765 56789999
Q ss_pred EEEeeeeccCCCCCCeeEEEcCCCccCCccc-------EEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 171 DMHCEAQEAEGTQKPTITWQRRDGVALPKNR-------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 171 ~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
.|.|.+. .+.|.+.+.|++++. .+.... .....+.|.|.++...|.|.|+|.|.|..|....++.|.+..
T Consensus 205 ~l~C~~~--~~~p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 205 QIVCSAT--NAEVGFNVILKRGDT-KLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp EEEEEEE--ESSSCCEEEEEETTE-ECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred EEEEEeC--CCCCceEEEEEECCE-EeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence 9999993 337899999999544 333211 112355799999999999999999999999999998887764
No 45
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.96 E-value=2.9e-27 Score=207.37 Aligned_cols=267 Identities=17% Similarity=0.298 Sum_probs=189.2
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~ 130 (460)
.+|.+...+....+.+|+.++|.|.+.+.|. .+.|++ +|..+.. ..++....++ .|.|.++..+|+|.|+|.
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~--~v~W~~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 78 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIIS--TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS--EEECBCTTCCBCCC--BTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC--ceEEECCCCcCccC--CCcEEEecCCCEEEEEEccCCcccCEEEEEE
Confidence 4677888888899999999999999998764 799999 6766643 3444444444 799999999999999999
Q ss_pred EEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEE-ecc
Q psy535 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKI-VGG 207 (460)
Q Consensus 131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~-~~~ 207 (460)
+.|..|.. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+ .+.|.+.+.|++++..... ..+... .++
T Consensus 79 ~~n~~g~~-~~~~~~l~v~~~~~~~~~~~~~-~v~~G~~v~l~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 153 (291)
T 2wim_A 79 ATDAKGQT-QEATVVLEIYQKLTFREVVSPQ-EFKQGEDAEVVCRV---SSSPAPAVSWLYHNEEVTTISDNRFAMLANN 153 (291)
T ss_dssp EECSSSCE-EEEEEEEEEECCCBCCSCCCSE-EEETTSCEEECCCC---BCSSCCEEEEECC----CBCCCSSEEECTTS
T ss_pred EecccCce-EEEEEEEEecCCcceEeCCCCh-hhcCCCCEEEEEEE---ccCCCCEEEEEECCccccccCCceEEEccCC
Confidence 99987765 3567778888888777666655 67899999999998 7889999999996554432 233333 356
Q ss_pred eEEEccccceeceEEEEEEeccccee--eeeeEEEEecCCCCCCCc--e--eeeeecceEEEEeecCCCCCCCceeeEEE
Q psy535 208 NITIEGLRRVDFGYYECVVSNEVATI--VQAAQLVVEGTQPHAPYN--I--TGVATEFSVTLEWLPGYSGGPDLKQNYVI 281 (460)
Q Consensus 208 ~l~i~~~~~~~~g~y~C~a~n~~g~~--~~~~~l~v~~~~p~~p~~--~--~~~~~~~~~~l~w~~~~~~~~~~~~~~~~ 281 (460)
.|.|.++...|.|.|+|.+.|..+.. .....+.+..+ |..... . .....+..+.|.|.. .+.+.+. +.
T Consensus 154 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~-p~~~~~~~~~~~~~~~g~~~~l~C~~--~g~p~p~---v~ 227 (291)
T 2wim_A 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP-PAISMPQKSFNATAERGEEMTFSCRA--SGSPEPA---IS 227 (291)
T ss_dssp CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBC-CCCBCSCSEEECCSSSCCEEEEECBC--CCBSCCE---EE
T ss_pred CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccC-CccccCcccccceecCCCeEEEEEEe--ecCCCCe---EE
Confidence 89999999999999999999887543 23445555542 322111 1 122345678888874 4445443 67
Q ss_pred EEEecCCCCe-eeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535 282 WYREQGNKDW-LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 337 (460)
Q Consensus 282 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~ 337 (460)
|++++..... ..... ......|.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus 228 W~~~g~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~ 283 (291)
T 2wim_A 228 WFRNGKLIEENEKYIL-KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283 (291)
T ss_dssp EEETTEECCCTTTEEE-CSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-
T ss_pred EEECCEECcCCccEEE-cCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEE
Confidence 8876532110 01111 1245689999999999999999999999977665555544
No 46
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.96 E-value=5.8e-28 Score=225.39 Aligned_cols=282 Identities=17% Similarity=0.160 Sum_probs=180.3
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcc-------eeeeEEEEecCCeeEEccee---eeecceeeEEEEEEEecCCC--
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQ-------AAQAYLNVEFPAKVTFTPTV---QYLPFRLQGVVQCHIKANPT-- 85 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~-------~~~~~l~v~~~p~~~~~~~~---~~~~~g~~~~l~C~~~~~~~-- 85 (460)
++|.|.+++.+|+|.|+|.|.|..|... +....|.|...|. ..|.. ..+.+|+.+.|.|.+.+.++
T Consensus 142 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~--~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~ 219 (450)
T 1z7z_I 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA--TPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219 (450)
T ss_dssp EEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCS--SCCEEECCSEEETTSEEEEEEEEESCTTGG
T ss_pred eEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCC--CCCEecCceeEEeCCcEEEEEEeeCCCCCC
Confidence 4899999999999999999999876421 1334555543211 12222 66788999999999999833
Q ss_pred CCeEEEeeCCeecCccccccEEEeecCeEEEe---ecCCCCCe--EEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc
Q psy535 86 FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT---RVNQNHQG--RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160 (460)
Q Consensus 86 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G--~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~ 160 (460)
.+.+.|++++..+.. ++... ...+.+. ++..+|+| .|+|.+.|..|.......+.|....+|.+...+
T Consensus 220 ~~~~~W~~~~~~~~~----~~~~~-~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~-- 292 (450)
T 1z7z_I 220 EAQVHLALGDQRLNP----TVTYG-NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK-- 292 (450)
T ss_dssp GCEEEEEETTEECCC----EEEEE-TTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESC--
T ss_pred ceEEEEeCCCEeCCc----eEEec-CCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCC--
Confidence 458999999998763 22222 2223222 77999999 999999999887666555555544356665443
Q ss_pred ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc-e---eeee
Q psy535 161 MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA-T---IVQA 236 (460)
Q Consensus 161 ~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g-~---~~~~ 236 (460)
. .+..|+.++|.|.+ . |.|.+.| ++..+... .....|.|..+...|.|.|+|.|.|..+ . ....
T Consensus 293 ~-~v~~G~~v~l~C~~---~--p~p~i~W---~g~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~ 360 (450)
T 1z7z_I 293 P-EVSEGTEVTVKCEA---H--PRAKVTL---NGVPAQPL---GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 360 (450)
T ss_dssp S-EEETTCEEEEEEEC---------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEE
T ss_pred e-eEeCCCcEEEEEec---C--CCCEeEE---CCEEcCCC---CceEEEEEecCcccCCceEEEEEEcCCCCccccccee
Confidence 2 57899999999998 4 8899999 33333111 1234799999999999999999997655 3 3355
Q ss_pred eEEEEecCCCCC----CCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccC
Q psy535 237 AQLVVEGTQPHA----PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPA 312 (460)
Q Consensus 237 ~~l~v~~~~p~~----p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 312 (460)
..|.|..+|... |... ....+..+.|.|. ..+.|.+. +.|++++.. . .. ....+ .+...
T Consensus 361 ~~l~V~~~P~~~~~~~p~~~-~~~~g~~~~l~C~--~~g~P~p~---i~W~~~g~~-----~--~~-~g~~~---~v~~~ 423 (450)
T 1z7z_I 361 RELRVLYGPRLDERDCPGNW-TWPENSQQTPMCQ--AWGNPLPE---LKCLKDGTF-----P--LP-IGESV---TVTRD 423 (450)
T ss_dssp EECEEEEEEECCSTTSCSEE-EEETTCEECCCCC--CEEESCCE---EEEEETTTE-----E--CC-TTSCE---ECCGG
T ss_pred EEEEEecCCceeeccCCCce-eEcCCCeEEEEEe--cccCCCCc---EEEEECCcc-----c--CC-CCCeE---eEehh
Confidence 666665432211 1221 2334567777776 45556553 678877541 1 11 22233 57789
Q ss_pred ccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535 313 TTYEFQVVGKNELGDGMLSNIVVVK 337 (460)
Q Consensus 313 ~~~~~~~~a~n~~G~~~~s~~~~~~ 337 (460)
+.|.|+|.|.|..|....+..+.+.
T Consensus 424 d~G~Y~C~a~N~~G~~~~~~~l~V~ 448 (450)
T 1z7z_I 424 LEGTYLCRARSTQGEVTREVTVNVL 448 (450)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hCeEEEEEEEeCCCceeEEEEEEEE
Confidence 9999999999999976555555543
No 47
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.96 E-value=5e-28 Score=222.73 Aligned_cols=230 Identities=21% Similarity=0.302 Sum_probs=180.5
Q ss_pred ccCcccceEEEeeCCeEEEeecCCCC-CeeEEEEEEeCCCCcc--eeeeEEEEec-------CCeeEEc---ceeeeecc
Q psy535 4 KVGSLETRVVIKKDGTLVINPVGSDD-SGLYMCEVSNGIGEPQ--AAQAYLNVEF-------PAKVTFT---PTVQYLPF 70 (460)
Q Consensus 4 ~~~~~~~r~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~~~--~~~~~l~v~~-------~p~~~~~---~~~~~~~~ 70 (460)
.+...+.|+.+..+|+|.|.+++.+| +|.|+|.|.|..+... ...+.|.|.. +|.+... +....+.+
T Consensus 157 ~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~ 236 (404)
T 3p3y_A 157 EPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLR 236 (404)
T ss_dssp CBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEET
T ss_pred cccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEec
Confidence 44566778888888999999999999 5999999999877532 2335566643 2332221 23456788
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK 150 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~ 150 (460)
|+++.|.|.+.+.|.+ .+.|++++..+... .......++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 237 G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~ 311 (404)
T 3p3y_A 237 GMDLLLECIASGVPTP-DIAWYKKGGDLPSD--KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI--RHTISVRVKA 311 (404)
T ss_dssp TSCEEEECCBCCSSCC-EEEEEETTBCCCTT--TEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEE--EEEEEEEEEE
T ss_pred CCCEEEEEEECCCCCC-cEEEEECCEECCCC--cccccccCceEEEccCCHhHCEEEEEEEEeCCCcE--EEEEEEEEeC
Confidence 9999999999998776 89999999987632 22333446789999999999999999999988874 4566677777
Q ss_pred CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc---ccEEEecceEEEccccceeceEEEEEEe
Q psy535 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK---NRVKIVGGNITIEGLRRVDFGYYECVVS 227 (460)
Q Consensus 151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 227 (460)
+|.+...+... .+..|+.++|.|.+ .|.|.+.+.|++++...... ......++.|.|.++...|.|.|+|.|.
T Consensus 312 ~p~~~~~~~~~-~v~~g~~~~l~C~~---~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 387 (404)
T 3p3y_A 312 APYWLDEPKNL-ILAPGEDGRLVCRA---NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTS 387 (404)
T ss_dssp EEEEEECCCCE-EECTTCCEEEECEE---EEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEE
T ss_pred CCeeeccCCcc-eeecCCcEEEEEEc---cccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEE
Confidence 88888777765 68899999999999 78899999999955433221 2445567789999999999999999999
Q ss_pred cccceeeeeeEEEEe
Q psy535 228 NEVATIVQAAQLVVE 242 (460)
Q Consensus 228 n~~g~~~~~~~l~v~ 242 (460)
|..|.......|.|.
T Consensus 388 N~~G~~~~~~~l~V~ 402 (404)
T 3p3y_A 388 NEHGYLLANAFVSVL 402 (404)
T ss_dssp ETTEEEEEEEEEEEC
T ss_pred eCCCcEEEEEEEEEE
Confidence 999999988888775
No 48
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A
Probab=99.96 E-value=1.6e-26 Score=205.10 Aligned_cols=255 Identities=20% Similarity=0.306 Sum_probs=182.5
Q ss_pred ccCCCCeEEEEeeeeccCCC-CCCeeEEEcCCCcc-CCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535 163 QRKVGESVDMHCEAQEAEGT-QKPTITWQRRDGVA-LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~-p~~~~~W~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~ 240 (460)
.+..|++++|.|.+ .+. +.+.+.|.++++.. ....+....++.|.|.++...|+|.|+|.+ .|.......|.
T Consensus 17 ~~~~G~~v~l~C~~---~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~~~~~~L~ 90 (325)
T 1n26_A 17 TSLPGDSVTLTCPG---VEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLL 90 (325)
T ss_dssp EECTTCCEEEECTT---SCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES---SSSCSCEEEEE
T ss_pred ECCCCCcEEEEeCC---CCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe---CCEEeeeEEEE
Confidence 45689999999998 444 47899999865543 222334455778999999999999999993 57777778888
Q ss_pred EecCCCCCCCceeee--eecceEEEEeecCCCCCCCceeeEEEEEEec-CC--CCe-eeee-ccCCCCceEEEccCc-cC
Q psy535 241 VEGTQPHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ-GN--KDW-LPIP-VTPPGSTQITINRLT-PA 312 (460)
Q Consensus 241 v~~~~p~~p~~~~~~--~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~-~~~~~~~~~~i~~l~-~~ 312 (460)
|.. +|..|. +.+. .....+.+.|.++.+++.+ ..|.+.|+.. +. ..| .... ....+...+.+..+. +.
T Consensus 91 V~~-pP~~P~-l~c~~~~~~~~~~c~W~~~~~~~~~--~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~ 166 (325)
T 1n26_A 91 VDV-PPEEPQ-LSCFRKSPLSNVVCEWGPRSTPSLT--TKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDS 166 (325)
T ss_dssp ECC-CCCCCC-CEEEBSSTTSCEEEEECCSSCCCTT--CEEEEEEEEESSSSCEEEEEEEEEETTTTEEEEEECCCTTCC
T ss_pred ecc-CCCCCc-eeEEeecCCCcEEEEECCCCCCCCC--ceEEEEEEEccCCCCCcccccCCCCCCCCCEEEEECCCcccC
Confidence 875 677776 5543 3356899999987665543 5788887754 21 122 1221 112245678888876 77
Q ss_pred ccEEEEEEEEcCCCCCCCCCcEEEEcc-CCCCCCCcceEEEeec---ceEEEEecCCCC--CCccceEEEEEEEEcCCee
Q psy535 313 TTYEFQVVGKNELGDGMLSNIVVVKTK-GPKPGPPRNVSVTEVN---NGFVISWQPPLE--RASLIQYYLIKYRTDGSWK 386 (460)
Q Consensus 313 ~~~~~~~~a~n~~G~~~~s~~~~~~~~-~~~P~~p~~~~~~~~~---~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~ 386 (460)
..|.|+|.|.|..|.+. +....+... ...|.||.++.+.... +++.|+|++|.. .++.+++|+|+|+..+.
T Consensus 167 ~~Y~f~v~A~N~~G~~~-s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~-- 243 (325)
T 1n26_A 167 SFYIVSMCVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERS-- 243 (325)
T ss_dssp CEEEEEEEEEETTEEEE-CCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTC--
T ss_pred cEEEEEEEEEcCCCCcc-cCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCCC--
Confidence 99999999999999763 444444433 2348999999998764 489999999875 45678999999997542
Q ss_pred eeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535 387 TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454 (460)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~ 454 (460)
..|..+.. .....++.|.+|.|++.|.|||+|+|..|.|.+|++
T Consensus 244 -----------------------~~W~~~~~-~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~w 287 (325)
T 1n26_A 244 -----------------------KTFTTWMV-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEW 287 (325)
T ss_dssp -----------------------SCCEEEEC-GGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCC
T ss_pred -----------------------CCCEEEcc-cCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCC
Confidence 12332221 124578999999999999999999999987666554
No 49
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.96 E-value=4.6e-27 Score=215.02 Aligned_cols=348 Identities=15% Similarity=0.211 Sum_probs=223.1
Q ss_pred CCeeEEccee-eeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeecCeEEEeecCCCC------CeEE
Q psy535 56 PAKVTFTPTV-QYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNGSLLFTRVNQNH------QGRY 127 (460)
Q Consensus 56 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~G~y 127 (460)
+|.|...|.. ..+.+|+.++|.|.+.|.|.+ .|+|+| +|..+.... .......+++|.|.++..+| +|.|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~k~~g~~~~~~~-~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y 80 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVP-GLRQISSDGKLVFPPFRAEDYRQEVHAQVY 80 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEEEESCC-EEEEEETTSCBCCCBT-TTBEECSTTEEEECCCCGGGCCHHHHEEEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEECCCCCCC-EEEEEcCCCCccccCC-CceEEcCCceEEecccChhhccccccCceE
Confidence 5677766654 457789999999999998766 899999 788775432 22344567899999999987 9999
Q ss_pred EEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC---CCeeEEEcCCCccCC-----c
Q psy535 128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ---KPTITWQRRDGVALP-----K 199 (460)
Q Consensus 128 ~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p---~~~~~W~~~~~~~~~-----~ 199 (460)
+|.|.|..|.. .+..+.|.+..+|.+...+... .+..|+.+.|.|.+ .+.+ .+.+.|++++..... .
T Consensus 81 ~C~a~n~~g~~-~s~~~~v~v~~~p~~~~~~~~~-~v~~G~~v~l~C~~---~~~~~~~~~~v~W~~~~~~~~~~~~~~~ 155 (388)
T 2v5m_A 81 ACLARNQFGSI-ISRDVHVRAVVAQYYEADVNKE-HVIRGNSAVIKCLI---PSFVADFVEVVSWHTDEEENYFPGAEYD 155 (388)
T ss_dssp EEEEEETTEEE-ECCCEEEEEECCCCCCCBCCCE-EEETTSCEEECCBC---CTTTTTTEEEEEEEETTCCEECSSSCBT
T ss_pred EEEEEccCCeE-EecceEEEEccccccccCccce-eeecCCcEEEEEEC---cCCCCCCcceEEEEeCCCcccccccCCC
Confidence 99999988764 3446667777777776666554 67899999999998 4443 378999996654421 2
Q ss_pred ccEEE-ecceEEEccccceec-eEEEEEEecccceee-ee---eEEEEecCC----CCCCCce---eeeeecceEEEEee
Q psy535 200 NRVKI-VGGNITIEGLRRVDF-GYYECVVSNEVATIV-QA---AQLVVEGTQ----PHAPYNI---TGVATEFSVTLEWL 266 (460)
Q Consensus 200 ~~~~~-~~~~l~i~~~~~~~~-g~y~C~a~n~~g~~~-~~---~~l~v~~~~----p~~p~~~---~~~~~~~~~~l~w~ 266 (460)
.+... .++.|.|.++...|. |.|+|.+.|..+... .. ..+.+..+. |..+... .....+..++|.|.
T Consensus 156 ~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~ 235 (388)
T 2v5m_A 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 235 (388)
T ss_dssp TTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCC
T ss_pred CcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEE
Confidence 23333 356899999999999 999999999764322 11 245554321 1111111 11233567888886
Q ss_pred cCCCCCCCceeeEEEEEEecCCCCee-eeecc---CCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCC
Q psy535 267 PGYSGGPDLKQNYVIWYREQGNKDWL-PIPVT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK 342 (460)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~ 342 (460)
..+.+.+. +.|+++....... ..... ......|.|.++...+.|.|+|.|.|..|....+..+.+......
T Consensus 236 --~~g~p~p~---v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 310 (388)
T 2v5m_A 236 --AQGFPAPS---FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 310 (388)
T ss_dssp --CEEESCCE---EEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEE
T ss_pred --CCCCCCCE---EEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCcc
Confidence 33444443 7788864332111 11000 012457999999999999999999999997555555555432110
Q ss_pred CCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535 343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422 (460)
Q Consensus 343 P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (460)
...|....+. ....+.|...... .+.. .|.|..++.. .....
T Consensus 311 ~~~~~~~~v~-~g~~~~l~C~~~g---~p~p--~i~W~~~g~~--------------------------------i~~~~ 352 (388)
T 2v5m_A 311 KIDPPTQTVD-FGRPAVFTCQYTG---NPIK--TVSWMKDGKA--------------------------------IGHSE 352 (388)
T ss_dssp EEESSEEEEC-TTSCEEEEEEEEE---ECCC--EEEEEETTEE--------------------------------CSCCS
T ss_pred ccCCCcEEec-CCCCEEEEEEecc---ccCC--eEEEEECCEE--------------------------------CccCC
Confidence 1122222221 2245555555321 1111 3555554420 01234
Q ss_pred ceEEECCCCcCceEEEEEEEeecCCCCCCCc
Q psy535 423 TQITINRLTPATTYEFQVVGKNELGDGMLSN 453 (460)
Q Consensus 423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~ 453 (460)
..+.|.++.....-.++..|.|..|....+-
T Consensus 353 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 383 (388)
T 2v5m_A 353 SVLRIESVKKEDKGMYQCFVRNDRESAEASA 383 (388)
T ss_dssp SEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred CEEEEecCChhhCEEEEEEEEcCCCcEEEEE
Confidence 5788999988888888899999999754443
No 50
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.96 E-value=5.3e-30 Score=255.75 Aligned_cols=392 Identities=16% Similarity=0.211 Sum_probs=35.5
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcc---eeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP---TVQYLPFRLQGVVQCHIKANPTFQYVTWTKD 94 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~ 94 (460)
++|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|.+...+ ....+.+|++++|.|.+.+.|.+ .+.|+++
T Consensus 290 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~ 367 (772)
T 3v2a_R 290 STLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP-EIKWYKN 367 (772)
T ss_dssp EEEEESSCCSTTCSEEEEEEECSSCEE-EEEEEEEEECCCC---------------------------------------
T ss_pred EEEEECcCCcCCCeEEEEEEEcCCcce-eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC-eEEEEEC
Confidence 479999999999999999999988764 778889998888765443 44667889999999999998766 7999999
Q ss_pred CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc--ccccCCCCeEEE
Q psy535 95 KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA--MYQRKVGESVDM 172 (460)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~--~~~~~~g~~~~l 172 (460)
|..+.. +......+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|..+|.+...... ...+..|+.++|
T Consensus 368 g~~l~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l 443 (772)
T 3v2a_R 368 GIPLES----NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTL 443 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEeCCC----CceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEE
Confidence 998763 22222446899999999999999999999988776677788888888876533111 113678999999
Q ss_pred EeeeeccCCCCCCe-eEEEcCCCccC-------------------------------C--cccEEE------ecceEEEc
Q psy535 173 HCEAQEAEGTQKPT-ITWQRRDGVAL-------------------------------P--KNRVKI------VGGNITIE 212 (460)
Q Consensus 173 ~C~~~~~~~~p~~~-~~W~~~~~~~~-------------------------------~--~~~~~~------~~~~l~i~ 212 (460)
.|.+ .+.|.|. +.|++++.... . ..+... ....|.|.
T Consensus 444 ~C~~---~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~ 520 (772)
T 3v2a_R 444 TCTV---YAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQ 520 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeEe---ccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEe
Confidence 9999 7888886 99998532110 0 001111 11346666
Q ss_pred cccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCce-eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe
Q psy535 213 GLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI-TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW 291 (460)
Q Consensus 213 ~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~-~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (460)
++ .|.|.|+|.|.|..|.......+.|... |...... .....+..+.|.|.. .+.+.+. +.|++++.....
T Consensus 521 ~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~-p~i~~~p~~~~~~G~~v~l~C~~--~~~p~~~---v~W~k~~~~~~~ 592 (772)
T 3v2a_R 521 AA--NVSALYKCEAVNKVGRGERVISFHVTRG-PEITLQPDMQPTEQESVSLWCTA--DRSTFEN---LTWYKLGPQPLP 592 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ec--ccCeEEEEEEEccccccceeEEEEEECC-ceeeccCCcccccCCceEEEEec--cCCCCCC---cEEEEcCCcccc
Confidence 55 6889999999999998888777777642 2211110 123345678888874 3333332 567776532110
Q ss_pred e---ee-------------------eccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCC--CcEEEEccCCCCC---
Q psy535 292 L---PI-------------------PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS--NIVVVKTKGPKPG--- 344 (460)
Q Consensus 292 ~---~~-------------------~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s--~~~~~~~~~~~P~--- 344 (460)
. .. .........|.|.++...+.|.|+|.|.|..|....+ ..+.+....+ |.
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~-P~~~~ 671 (772)
T 3v2a_R 593 IHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA-PTITG 671 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCC-CEeec
Confidence 0 00 0001112358999999999999999999976544332 2333332211 21
Q ss_pred CCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcce
Q psy535 345 PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQ 424 (460)
Q Consensus 345 ~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (460)
.+.+..+. ....+.|....... |. -.|.|..++.-. .. ...+. ...+...
T Consensus 672 ~~~~~~v~-~g~~~~l~C~~~g~---P~--p~v~W~k~g~~l--~~------~~~~~----------------~~~~~~~ 721 (772)
T 3v2a_R 672 NLENQTTS-IGESIEVSCTASGN---PP--PQIMWFKDNETL--VE------DSGIV----------------LKDGNRN 721 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceEEe-CCCCEEEEEEeCcc---CC--CeEEEEECCeEC--cC------CCCeE----------------EcCCCcE
Confidence 22222221 12345555443211 11 134444433200 00 00000 0112356
Q ss_pred EEECCCCcCceEEEEEEEeecCCCCCCCceeEe
Q psy535 425 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457 (460)
Q Consensus 425 ~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~ 457 (460)
+.|.++.....-.+++.|.|..|....+-.+.+
T Consensus 722 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 754 (772)
T 3v2a_R 722 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754 (772)
T ss_dssp ---------------------------------
T ss_pred EEECcCCHHHCEEEEEEEEeCCcceeEEEEEEE
Confidence 778888887788888999999998665544443
No 51
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.96 E-value=8.1e-29 Score=220.15 Aligned_cols=229 Identities=15% Similarity=0.232 Sum_probs=163.2
Q ss_pred CcccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec--
Q psy535 6 GSLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA-- 82 (460)
Q Consensus 6 ~~~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-- 82 (460)
...+.|+.+..+ ++|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..+|.+...+....+.+|+.+.|.|.+.+
T Consensus 48 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~ 126 (317)
T 2y25_A 48 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQ 126 (317)
T ss_dssp ECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEE-EEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEE
T ss_pred cCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcE-EEEEEEEEecCccccccCCceecccCCCeEEEeeccccE
Confidence 344556666433 499999999999999999999988764 4455555554444333344445566777777777665
Q ss_pred --------CCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee--
Q psy535 83 --------NPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-- 149 (460)
Q Consensus 83 --------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~-- 149 (460)
.|. +.+.|++++..+... .++.....+ .|.|.++..+|+|.|+|.|.|..|....+ +.|.+.
T Consensus 127 l~c~~~~~~p~-~~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~~ 201 (317)
T 2y25_A 127 LYSFVTYYVED-LKVNWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT--VDLSGQAY 201 (317)
T ss_dssp EEEEBSSCCSS-CEEEEEESSSBCCCC--SSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEE--EEECHHHH
T ss_pred EEEEeccCCCC-cEEEEEECCEECCCC--CCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEE--EEEeeeec
Confidence 444 489999999988642 333333333 49999999999999999999988765444 344322
Q ss_pred ------------------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec--c--
Q psy535 150 ------------------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG--G-- 207 (460)
Q Consensus 150 ------------------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~-- 207 (460)
.+|.+...+.....+..|+.+.|.|.+ .+.|.|.+.|++++..+....++.+.. +
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~ 278 (317)
T 2y25_A 202 DEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALASDDHCNLKFEAGRT 278 (317)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE---ECSSCCEEEEEESSSEECCCSSEEECCBTTTE
T ss_pred cccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE---ecCCCCEEEEEECCEeCCCCCcEEEEEcCCCE
Confidence 123333333333367899999999999 789999999999666555555555543 2
Q ss_pred -eEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 208 -NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 208 -~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
.|.|.++...|.|.|+|.|.|..|.......|.|..
T Consensus 279 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 279 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp EEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 799999999999999999999999998888888863
No 52
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.96 E-value=9.3e-28 Score=219.10 Aligned_cols=223 Identities=22% Similarity=0.384 Sum_probs=175.2
Q ss_pred ccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCc----ceeeeEEEEec------CCeeEE-cceeeeecceeeEE
Q psy535 8 LETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEP----QAAQAYLNVEF------PAKVTF-TPTVQYLPFRLQGV 75 (460)
Q Consensus 8 ~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~ 75 (460)
.++|..+..+ ++|.|.+++.+|+|.|+|.+.+..|.. .+..+.|.|.. +|.+.. .+....+.+|++++
T Consensus 147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~ 226 (382)
T 1cs6_A 147 ADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVT 226 (382)
T ss_dssp CCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEE
T ss_pred cCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEE
Confidence 3455555443 799999999999999999999977432 12234555432 344443 35567788999999
Q ss_pred EEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCcee
Q psy535 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT 155 (460)
Q Consensus 76 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~ 155 (460)
|.|.+.+.|.+ .+.|++++..+... .....+.|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..+|.+.
T Consensus 227 l~C~~~g~p~~-~i~W~~~~~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~ 298 (382)
T 1cs6_A 227 LECFAFGNPVP-QIKWRKLDGSQTSK-----WLSSEPLLHIQNVDFEDEGTYECEAENIKGRD--TYQGRIIIHAQPDWL 298 (382)
T ss_dssp EECEEEEESCC-EEEEEECCSCCSCC-----CSBSSSEEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEEEEEEEE
T ss_pred EEEEEccCCCC-EEEEEECCcccccE-----EecCCcEEEEccCChhhCEEEEEEEEcCCCeE--EEEEEEEEecCCCcc
Confidence 99999998765 79999988776421 11245679999999999999999999988874 445566667788887
Q ss_pred eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeee
Q psy535 156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 235 (460)
..+... .+..|+.++|.|.+ .|.|.+.+.|++++..+....++...++.|.|.++...|.|.|+|.|.|..|....
T Consensus 299 ~~~~~~-~~~~g~~~~l~C~~---~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 374 (382)
T 1cs6_A 299 DVITDT-EADIGSDLRWSCVA---SGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYA 374 (382)
T ss_dssp ECCCCE-EEETTCCEEEECEE---EEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred cCCCcc-EEcCCCeEEEEEEe---eeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEE
Confidence 776665 67899999999999 78899999999966555555677777889999999999999999999999999998
Q ss_pred eeEEEEe
Q psy535 236 AAQLVVE 242 (460)
Q Consensus 236 ~~~l~v~ 242 (460)
...|.|.
T Consensus 375 ~~~l~V~ 381 (382)
T 1cs6_A 375 SAELTVQ 381 (382)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8888775
No 53
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=220.60 Aligned_cols=297 Identities=14% Similarity=0.114 Sum_probs=182.2
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE----ecCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEee
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV----EFPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTK 93 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~ 93 (460)
.|.|.+++.+|+|.|+|.|.|..+.. ...+.+.+ ..+|.+...+....+.+|+.+.|.|.+.+. |.+..|+|++
T Consensus 179 ~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k 257 (523)
T 2rcj_C 179 YLSLTPEQWKSHRSYSCQVTHEGSTV-EKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNS 257 (523)
T ss_pred EEEEechhcCCCceEEEEEEecCccc-ccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEec
Confidence 59999999999999999999987764 33333322 235555433333456789999999999887 5444799999
Q ss_pred CCeecCccccccEEEee------cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceee-CCCcccccCC
Q psy535 94 DKRLLEPYQTKDIVVMQ------NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTI-KPEAMYQRKV 166 (460)
Q Consensus 94 ~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~-~~~~~~~~~~ 166 (460)
++..+......... .. .+.|.|.++..+| |.|+|.|.|..|..... ..|.+...|.+.+ .|.....+..
T Consensus 258 ~g~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~--~~l~v~~~P~~~~~~p~~~~~v~~ 333 (523)
T 2rcj_C 258 GALTSGVHTFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD--KRVEPLSLPSVFLFPPKPKDTLMI 333 (523)
T ss_pred CCcccceEeCCcEe-cCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceE--EecCCCcCceEEecCCCchhhccc
Confidence 99875432212211 12 2379999999999 99999999998876444 3444444555433 3332212678
Q ss_pred CCeEEEEeeeeccCCCCC----CeeEEEcCCCccCCcccE---E------EecceEEEccccceeceEEEEEEeccccee
Q psy535 167 GESVDMHCEAQEAEGTQK----PTITWQRRDGVALPKNRV---K------IVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 167 g~~~~l~C~~~~~~~~p~----~~~~W~~~~~~~~~~~~~---~------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
|+.+.|.|.+ .|.++ +.+.|++++..+...... . ...+.|.|..+...|.|.|+|.|.|..+..
T Consensus 334 g~~~~l~C~~---~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 410 (523)
T 2rcj_C 334 SRTPEVTCVV---VDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 410 (523)
T ss_pred CCceEEEEEE---ecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCC
Confidence 9999999999 56443 599999965443322211 1 112347888888899999999999987765
Q ss_pred eeeeEEEEecCCCCCCCcee-----eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCc-----
Q psy535 234 VQAAQLVVEGTQPHAPYNIT-----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGST----- 302 (460)
Q Consensus 234 ~~~~~l~v~~~~p~~p~~~~-----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----- 302 (460)
.....+.+......+|.... .......++|.|... +.+++ .-.+.|++++..... ...........
T Consensus 411 ~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~--g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~ 487 (523)
T 2rcj_C 411 PIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVK--GFYPS-DIAVEWESNGQPENNYKTTPPVLDSDGSFFLY 487 (523)
T ss_pred ceeEEEEcccCCCCCCEEEEeCCChHHccCCceEEEEEEE--eeECC-CCEEEEEECCEECCCeeeccceeCCCCCEEEE
Confidence 44444432111122222111 011233488888743 32222 113678877543211 11111111111
Q ss_pred -eEEEccCccCccEEEEEEEEcCCC
Q psy535 303 -QITINRLTPATTYEFQVVGKNELG 326 (460)
Q Consensus 303 -~~~i~~l~~~~~~~~~~~a~n~~G 326 (460)
.+.+......+.|.|.|.|.|...
T Consensus 488 ~~l~v~~~~~~~~g~Y~C~a~n~~l 512 (523)
T 2rcj_C 488 SKLTVDKSRWQQGNVFSCSVMHEAL 512 (523)
T ss_pred EEEEEChHHccCCCeEEEEEEcCCc
Confidence 233443444668999999999864
No 54
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.95 E-value=3.5e-28 Score=215.52 Aligned_cols=228 Identities=14% Similarity=0.246 Sum_probs=164.7
Q ss_pred CcccCcccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec------------CCeeEEcce-e
Q psy535 2 NTKVGSLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF------------PAKVTFTPT-V 65 (460)
Q Consensus 2 ~~~~~~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~------------~p~~~~~~~-~ 65 (460)
|+.....+.|+.+..+| +|.|.+++.+|+|.|+|.|.|..|.. ....|.|.. +|.+...+. .
T Consensus 39 ~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~--~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~ 116 (312)
T 2y23_A 39 DYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA--SSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116 (312)
T ss_dssp TTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC--EEEEECHHHHHHHHHHHHHHHSCBCCEEEEEE
T ss_pred CCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE--EEEEEEEeeeeeeecccccCCCCccccccCCc
Confidence 34445567788887765 99999999999999999999988854 356666643 566555443 7
Q ss_pred eeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCccccccEEEeec---C--eEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 66 QYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---G--SLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~--~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
..+.+|+++.|.|.+. +.|. +.+.|++++..+... .++.+..+ + .|.|.++..+|+|.|+|.+.+..+.
T Consensus 117 ~~v~~G~~v~l~C~~~~~~p~-~~v~W~~~~~~i~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-- 191 (312)
T 2y23_A 117 VEILEKGQVRFWMQAEKLSGN-AKVNYIFNEKEIFEG--PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT-- 191 (312)
T ss_dssp EEECSSSCEEEEEEESCCCSS-CEEEEEETTEEECSS--SSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE--
T ss_pred eEEeeCCCEEEEEEEEeCCCC-CEEEEEECCEECeeC--CcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce--
Confidence 7888999999999998 6665 489999999998743 33333332 2 3999999999999999999864332
Q ss_pred eeeEEEEE-------------------eeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCc
Q psy535 140 SSGQMEVL-------------------VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPK 199 (460)
Q Consensus 140 ~~~~~~v~-------------------v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~ 199 (460)
....+.+. ...+|.+..... ..+..|+.+.|.|.+ .+.|.+ .+.|++++..+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~v~~G~~~~l~C~~---~~~p~~~~v~W~~~g~~~~~~ 266 (312)
T 2y23_A 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS--WEVTGECNVLLKCKV---ANIKKETHIVWYKDEREISVD 266 (312)
T ss_dssp EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE--EEEETTTEEEEEEEE---ESCCSSCEEEEEETTEEEEEE
T ss_pred EEEEEEEcchhhhhhcccccccccchhhccCCceeecce--EEEeCCCEEEEEEEE---cCCCCCCEEEEeeCCEECCCC
Confidence 22222221 012344332222 267899999999999 688887 99999954433323
Q ss_pred ccEEEec--ceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 200 NRVKIVG--GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 200 ~~~~~~~--~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
.+..... ..|.|.++...|+|.|+|.|.|..|.......|.+
T Consensus 267 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i 310 (312)
T 2y23_A 267 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310 (312)
T ss_dssp CCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred CcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence 3333322 47999999999999999999999999888887754
No 55
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.95 E-value=1.3e-27 Score=215.18 Aligned_cols=230 Identities=17% Similarity=0.213 Sum_probs=143.0
Q ss_pred ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE----EcceeeeecceeeEEEEEEE---
Q psy535 8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT----FTPTVQYLPFRLQGVVQCHI--- 80 (460)
Q Consensus 8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~----~~~~~~~~~~g~~~~l~C~~--- 80 (460)
...|+.. .+++|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|..++.+. ..|....+.+|+++.|.|.+
T Consensus 70 ~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 147 (349)
T 4dep_C 70 PENRISK-EKDVLWFRPTLLNDTGNYTCMLRNTTYCS-KVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDG 147 (349)
T ss_dssp GGGCEEE-ETTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTT
T ss_pred cCceEee-cCCEEEEccCChhhCEEEEEEEecCCceE-EEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcc
Confidence 3455554 56799999999999999999999987764 567888887655422 23456678889999999985
Q ss_pred --ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc--eeeEEEEEeeC------
Q psy535 81 --KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG--SSGQMEVLVRK------ 150 (460)
Q Consensus 81 --~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~--~~~~~~v~v~~------ 150 (460)
.+.|.+ .++|+|++..+.. ..+ ....+..|.|.++..+|+|.|+|.|.|..+... .+..+.|.|..
T Consensus 148 ~~~g~p~~-~v~W~k~~~~l~~--~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~ 223 (349)
T 4dep_C 148 YFPSSVKP-TITWYMGCYKIQN--FNN-VIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAV 223 (349)
T ss_dssp SSCTTSCC-EEEEEETTEECCS--CSS-EEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCC
T ss_pred cccCCCCc-eEEEeeCCEECCC--ccc-eeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCC
Confidence 555655 8999999998853 222 233446799999999999999999999764332 46677777765
Q ss_pred CCceeeCCCcc-cccCCCCeEEEEeeeecc-CCCCCCeeEEEcCCCccCC-cccEEE-------------ecceEEEccc
Q psy535 151 PPAFTIKPEAM-YQRKVGESVDMHCEAQEA-EGTQKPTITWQRRDGVALP-KNRVKI-------------VGGNITIEGL 214 (460)
Q Consensus 151 ~p~~~~~~~~~-~~~~~g~~~~l~C~~~~~-~~~p~~~~~W~~~~~~~~~-~~~~~~-------------~~~~l~i~~~ 214 (460)
+|.+...+... ..+..|+.++|.|.+... .+.|.+.+.|++++..+.. ..+... ....|.|.++
T Consensus 224 ~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v 303 (349)
T 4dep_C 224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV 303 (349)
T ss_dssp SCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-----
T ss_pred CCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeec
Confidence 45554433322 257789999999998310 0578899999995543322 111111 2335899999
Q ss_pred cceec-eEEEEEEecccceeeeeeEEEEec
Q psy535 215 RRVDF-GYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 215 ~~~~~-g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
...|. |.|+|.|.|..|.......|.|..
T Consensus 304 ~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 304 TSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp --------CEEEEECSSCEEEEECC-----
T ss_pred cHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 99999 999999999999999888888864
No 56
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.95 E-value=1.5e-27 Score=222.07 Aligned_cols=311 Identities=15% Similarity=0.136 Sum_probs=188.2
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEec----CCeeEEcceeeeecceeeEEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVV 76 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l 76 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.|.+..+. .....+.|.|.. +|.+...+....+.+|+.++|
T Consensus 64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L 143 (444)
T 1igt_B 64 VKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTL 143 (444)
T ss_dssp GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEE
T ss_pred cCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEE
Confidence 4579998763 48999999999999999999987654 123446778763 344433332233578999999
Q ss_pred EEEEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE-----
Q psy535 77 QCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV----- 146 (460)
Q Consensus 77 ~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v----- 146 (460)
.|.+.+. |.+..|.|++++..+......... ....+.|.|.++..+| |.|+|.|.|..+.......+.+
T Consensus 144 ~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~ 222 (444)
T 1igt_B 144 GCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTI 222 (444)
T ss_dssp EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSC
T ss_pred EEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCc
Confidence 9999886 544489999998764211111111 1112468999999899 9999999998887533333322
Q ss_pred -----------EeeCCCceeeCCCcccc-cCCCCeEEEEeeeeccCCC---C-CCeeEEEcCCCccCCcc---cEE----
Q psy535 147 -----------LVRKPPAFTIKPEAMYQ-RKVGESVDMHCEAQEAEGT---Q-KPTITWQRRDGVALPKN---RVK---- 203 (460)
Q Consensus 147 -----------~v~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~~---p-~~~~~W~~~~~~~~~~~---~~~---- 203 (460)
.+..+|.+...+..... +..|+.++|.|.+ .|. | .+.+.|++++....... ...
T Consensus 223 ~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~---~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~ 299 (444)
T 1igt_B 223 KPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVV---VDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS 299 (444)
T ss_dssp CCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEE---EEECTTCCCCEEEEEETTEECSSTTCBCCEEECSS
T ss_pred ccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEE---eecccCCCCeEEEEEECCccccCcccccceeCCCC
Confidence 11224554333333222 5889999999999 455 2 46999999654332211 111
Q ss_pred --EecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCcee-e----eeecceEEEEeecCCCCCCCce
Q psy535 204 --IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT-G----VATEFSVTLEWLPGYSGGPDLK 276 (460)
Q Consensus 204 --~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~-~----~~~~~~~~l~w~~~~~~~~~~~ 276 (460)
...+.|.|.++...|.|.|+|.|.|..+.......+.+......+|.... . ......++|.|..... .+++
T Consensus 300 ~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~-~P~~- 377 (444)
T 1igt_B 300 TLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDF-MPED- 377 (444)
T ss_dssp SEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEE-BSSC-
T ss_pred cEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEee-eCCC-
Confidence 12347999999999999999999998886533333322111222332211 1 1123358888874211 1222
Q ss_pred eeEEEEEEecCCCCee-eeec--cCCCC----ceEEEccCccCccEEEEEEEEcCC
Q psy535 277 QNYVIWYREQGNKDWL-PIPV--TPPGS----TQITINRLTPATTYEFQVVGKNEL 325 (460)
Q Consensus 277 ~~~~~~~~~~~~~~~~-~~~~--~~~~~----~~~~i~~l~~~~~~~~~~~a~n~~ 325 (460)
-.+.|++++...... .... ...+. ..+.+......+.|.|.|.|.|..
T Consensus 378 -~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~ 432 (444)
T 1igt_B 378 -IYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG 432 (444)
T ss_dssp -CEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred -CEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence 136788875432111 1111 11111 123344444445899999999975
No 57
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=210.09 Aligned_cols=266 Identities=21% Similarity=0.332 Sum_probs=174.0
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCC-CCCeEEEE
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQ-NHQGRYTC 129 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~-~d~G~y~C 129 (460)
..+|.|...|....+.+|++++|.|.+.+.|.+ .|+|+++|..+... ........+ ..|.|.++.. +|+|.|+|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C 81 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKP-RVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYEC 81 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCC-eEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence 457888888988999999999999999988766 89999999887531 111111222 3699999998 99999999
Q ss_pred EEEcCCCCcceeeEEEEEeeCC-------CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc---
Q psy535 130 TPYNAHGTQGSSGQMEVLVRKP-------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--- 199 (460)
Q Consensus 130 ~~~~~~g~~~~~~~~~v~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--- 199 (460)
.|.|..|....... |.|..+ |.+...+... .+..|+.+.|.|.+ .+.|.+.+.|++++......
T Consensus 82 ~a~n~~g~~~~~~~--l~V~~~~~~p~~~p~i~~~~~~~-~v~~g~~v~l~C~~---~g~p~~~v~W~k~~~~~~~~~~~ 155 (304)
T 2yd9_A 82 VAQNSVGEITVHAK--LTVLREDQLPSGFPNIDMGPQLK-VVERTRTATMLCAA---SGNPDPEITWFKDFLPVDPSASN 155 (304)
T ss_dssp EEECSSCEECCEEE--EEEECGGGCCTTCCEEEECCCCE-EEETTSCEEECCEE---ECSSCCEEEEEETTEECCGGGGT
T ss_pred EEECCCCeEEEEEE--EEEeccccCCCCCCeeecCCccE-EEeCCCeEEEEEEC---ccCCCCeEEEEECCEECcCCCCc
Confidence 99998887544444 444433 5666666554 67889999999999 78899999999954433221
Q ss_pred ccE-EEecceEEEccccceeceEEEEEEecccceeeee-eEEEEec--CCCC---CCCceeeeeecceEEEEeecCCCCC
Q psy535 200 NRV-KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEG--TQPH---APYNITGVATEFSVTLEWLPGYSGG 272 (460)
Q Consensus 200 ~~~-~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~~--~~p~---~p~~~~~~~~~~~~~l~w~~~~~~~ 272 (460)
.++ ...++.|.|.++...|.|.|+|.|.|..|..... ..+.+.. .+|. .|.. .....+..+.|.|.. .+.
T Consensus 156 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~-~~v~~G~~v~l~C~~--~g~ 232 (304)
T 2yd9_A 156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMS-HEIMPGGNVNITCVA--VGS 232 (304)
T ss_dssp TSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCC-BCCCTTCCEEEEEEE--EEE
T ss_pred ceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCc-eEEcCCCeEEEEEEE--eee
Confidence 123 2235689999999999999999999998876533 4444432 1111 1111 112345678888874 334
Q ss_pred CCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535 273 PDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 337 (460)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~ 337 (460)
+.+. +.|++++....... ....+...|.+.++ .+.|.|+|.|.|..|....+..+.+.
T Consensus 233 p~p~---v~W~~~~~~l~~~~--~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~ 290 (304)
T 2yd9_A 233 PMPY---VKWMQGAEDLTPED--DMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK 290 (304)
T ss_dssp SCCE---EEEEETTEECSCSS--SCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred CCCE---EEEEECCEECCCcc--cccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence 4443 67777653211100 01112334666665 57899999999999976555444443
No 58
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.95 E-value=4.9e-28 Score=216.68 Aligned_cols=237 Identities=22% Similarity=0.311 Sum_probs=128.4
Q ss_pred CcccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC----------------------ee
Q psy535 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA----------------------KV 59 (460)
Q Consensus 2 ~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p----------------------~~ 59 (460)
|+.....++|+.+ .+++|.|.+++.+|+|.|+|.|.|. |.. +..+.|.|..++ .+
T Consensus 46 ~g~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 122 (334)
T 1ry7_B 46 DGTGLVPSERVLV-GPQRLQVLNASHEDSGAYSCRQRLT-QRV-LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYW 122 (334)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CCeeCCCcccEEe-ccceEEEeecccccCEEEEEEEEeC-CeE-EEEEEEEEeccCccccccccccccccccccCCCCEE
Confidence 3344455667776 5679999999999999999999998 543 566777776432 22
Q ss_pred EE----cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccccc--EEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535 60 TF----TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 60 ~~----~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.. .+....+.+|+++.|.|.+.+.|.+ .+.|++++..+....... ........|.|.++..+|+|.|+|.|.|
T Consensus 123 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 201 (334)
T 1ry7_B 123 TRPERMDKKLLAVPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 201 (334)
T ss_dssp SCCTTCCCCEEEEETTCCEEEECCCCCSSCC-EEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEE
T ss_pred eccccccceeEEecCCCcEEEEEEccCCCCC-eEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEe
Confidence 21 1233567789999999999988765 799999998876432111 1112345799999999999999999999
Q ss_pred CCCCcceeeEEEEEeeC--CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcC----CCccCCccc--EEEe
Q psy535 134 AHGTQGSSGQMEVLVRK--PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR----DGVALPKNR--VKIV 205 (460)
Q Consensus 134 ~~g~~~~~~~~~v~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~----~~~~~~~~~--~~~~ 205 (460)
..|.......+.|.... +|.+.........+..|+.+.|.|.+ .+.|.+.+.|++. +........ ....
T Consensus 202 ~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~ 278 (334)
T 1ry7_B 202 KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVL 278 (334)
T ss_dssp TTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC---BCSSCEEEEEEECCCGGGCSBCTTSSBCCCCC
T ss_pred CCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE---ecCCCCeEEEEECCcCCCccccCCCCeeEEEe
Confidence 88875444444443221 23333222122367889999999998 7899999999983 322221111 1110
Q ss_pred -----------cceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535 206 -----------GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245 (460)
Q Consensus 206 -----------~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~ 245 (460)
...|.|.++...|.|.|+|.|.|..|....+..|.|...+
T Consensus 279 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 279 KTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp CCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred ecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence 1269999999999999999999999999999999887543
No 59
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=208.84 Aligned_cols=217 Identities=18% Similarity=0.201 Sum_probs=163.5
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC-Ce
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD-KR 96 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~ 96 (460)
+|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..++. +...+....+.+|+++.|.|.+.+.+..+.++|+++ +.
T Consensus 52 ~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~ 130 (292)
T 4dkd_C 52 ILSTNNATFQNTGTYRCTEPGDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGR 130 (292)
T ss_dssp EEEESSCCGGGCSCEEECCCC----C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGC
T ss_pred EEEEcccccccCEEEEEEEccCCCCc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCC
Confidence 99999999999999999999987775 7788899988776 355677788889999999999987322247999997 44
Q ss_pred ecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEE
Q psy535 97 LLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDM 172 (460)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l 172 (460)
.+. ...++....++.|.|.++..+|+|.|+|.+.|..+.. .+..+.|.|.. +|.+...+... .+..|+.+.|
T Consensus 131 ~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~p~i~~~~~~~-~~~~g~~v~l 206 (292)
T 4dkd_C 131 PLM--RHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKV-MSISIRLKVQKVIPGPPALTLVPAEL-VRIRGEAAQI 206 (292)
T ss_dssp CCC--SSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCE-ECCCEEEEEECCCCSSCEEEEESSCB-CCCSSSCEEE
T ss_pred ccc--cCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCce-eEEEEEEEEeCCCCCCCeEEccCCce-eEecCCCEEE
Confidence 443 3344555556679999999999999999999876644 34466677765 88888877765 5679999999
Q ss_pred EeeeeccCCCC-CCeeEEEcCCCccCCcccEEE------ecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 173 HCEAQEAEGTQ-KPTITWQRRDGVALPKNRVKI------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 173 ~C~~~~~~~~p-~~~~~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
.|.+ .+.| .+.+.|.+++........... ....|.|.++...|.|.|+|.|.|..|....+..|.|..
T Consensus 207 ~C~~---~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 281 (292)
T 4dkd_C 207 VCSA---SSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281 (292)
T ss_dssp EEEE---EESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred EEEe---cCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence 9999 4544 457888875443322222211 234799999999999999999999999998888887764
No 60
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.95 E-value=3.4e-26 Score=202.03 Aligned_cols=267 Identities=22% Similarity=0.366 Sum_probs=191.5
Q ss_pred CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEe---cc--eEEEccccceeceEEE
Q psy535 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIV---GG--NITIEGLRRVDFGYYE 223 (460)
Q Consensus 150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~---~~--~l~i~~~~~~~~g~y~ 223 (460)
.+|.+...+... .+..|+.++|.|.+ .+.|.+.+.|++++...... .+.... ++ .|.|.++...|.|.|+
T Consensus 3 ~~P~~~~~p~~~-~v~~G~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 78 (305)
T 2nzi_A 3 MAPHFKEELRNL-NVRYQSNATLVCKV---TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78 (305)
T ss_dssp CCCEEEECCCCE-EECTTCCEEEEEEE---ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEE
T ss_pred CCCeeeecccce-EEeCCCcEEEEEEE---eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEE
Confidence 367777777765 78999999999999 68899999999955444322 233332 22 7999999999999999
Q ss_pred EEEecccceeeeeeEEEEecCCC-CCCCc-----eeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC---Ceeee
Q psy535 224 CVVSNEVATIVQAAQLVVEGTQP-HAPYN-----ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPI 294 (460)
Q Consensus 224 C~a~n~~g~~~~~~~l~v~~~~p-~~p~~-----~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 294 (460)
|.+.|..|.......|.|..++. ..|.. ......+..+.|.|.. .+.+.+ -+.|++++... .....
T Consensus 79 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~g~p~p---~i~W~~~~~~~~~~~~~~~ 153 (305)
T 2nzi_A 79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF--SGKPDP---VITWQKGQDLIDNNGHYQV 153 (305)
T ss_dssp EEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE--EEESCC---EEEEEESSSBCCSSSSCEE
T ss_pred EEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE--CCCCCC---EEEEEECCEECCCCCcEEE
Confidence 99999999888888887764321 11111 1112335678888874 333443 26777765421 11111
Q ss_pred eccCCCCceEEEcc-CccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCC-Ccc
Q psy535 295 PVTPPGSTQITINR-LTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLER-ASL 371 (460)
Q Consensus 295 ~~~~~~~~~~~i~~-l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~-~~~ 371 (460)
. .......+.|.+ +...+.|.|+|.|.|..|....+..+.+. .+|.+|.++.+.... +++.|+|.+|... +.+
T Consensus 154 ~-~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~---~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~ 229 (305)
T 2nzi_A 154 I-VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA---DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK 229 (305)
T ss_dssp E-ECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEE---BCCCCCEEEEEESCCSSCEEEEEECCSCCSBSC
T ss_pred E-EcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEe---cCCCCCCCceeeeccCCEEEEEEcCCccCCCCc
Confidence 1 112346788998 99999999999999999987666666665 348889998888765 6999999987543 558
Q ss_pred ceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCC
Q psy535 372 IQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML 451 (460)
Q Consensus 372 i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~ 451 (460)
+..|.++++.... ..|...... ....+.|.+|.+++.|.|+|.|.|..|.|++
T Consensus 230 i~~y~v~~~~~~~-------------------------~~w~~~~~~--~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~ 282 (305)
T 2nzi_A 230 ITNYIVEKCATTA-------------------------ERWLRVGQA--RETRYTVINLFGKTSYQFRVIAENKFGLSKP 282 (305)
T ss_dssp EEEEEEEEEETTS-------------------------CCEEEEEEE--SSSEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred eeEEEEEEecCCC-------------------------CccEECccc--cCceEEecCCCCCCeEEEEEEEEeCCcccCC
Confidence 9999999987542 123332221 2578999999999999999999999999999
Q ss_pred CceeE
Q psy535 452 SNIVV 456 (460)
Q Consensus 452 s~~~~ 456 (460)
|....
T Consensus 283 S~~~~ 287 (305)
T 2nzi_A 283 SEPSE 287 (305)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88654
No 61
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.95 E-value=9e-27 Score=208.23 Aligned_cols=227 Identities=19% Similarity=0.256 Sum_probs=170.9
Q ss_pred CcccceEEEe----eCCeEEEeecCCCCCeeEEEEEE-eCCCCcceeeeEEEEecCCeeEE--cceeeeecce---eeEE
Q psy535 6 GSLETRVVIK----KDGTLVINPVGSDDSGLYMCEVS-NGIGEPQAAQAYLNVEFPAKVTF--TPTVQYLPFR---LQGV 75 (460)
Q Consensus 6 ~~~~~r~~~~----~~~~L~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~g---~~~~ 75 (460)
....+|+.+. .+++|.|.+++.+|+|.|+|.+. +..+. ....+.|.|..+|.+.. .+....+.+| +.+.
T Consensus 76 ~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~ 154 (331)
T 3u83_A 76 APYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGN-RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLV 154 (331)
T ss_dssp TTCTTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEE
T ss_pred cccCCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCc-cEEEEEEEEecCCcceeecCCCceeecCCCccceEE
Confidence 3566888876 24689999999999999999855 44444 47788999998887643 4555667777 7799
Q ss_pred EEEE-EecCCCCCeEEEeeCCeecCc-----cccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 76 VQCH-IKANPTFQYVTWTKDKRLLEP-----YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 76 l~C~-~~~~~~~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
|.|. +.+.|.+ .++|++++..... ...... .....|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 155 l~C~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~--~~~~~l~V~ 229 (331)
T 3u83_A 155 ATCTSANGKPPS-VVSWETRLKGEAEYQEIRNPNGTV--TVISRYRLVPSREAHQQSLACIVNYHMDRF--KESLTLNVQ 229 (331)
T ss_dssp EEEEEEEEBSCC-EEEEEESSCCEEEEEEEECTTSCE--EEEEEEEECCCGGGTTCEEEEEEEETTEEE--EEEEECCEE
T ss_pred EEEEecCCcCCc-eEEEEcCCCCccccceeECCCCcE--EEEEEEEEEeccccCCCEEEEEEecCCCcc--eeeEEEEEe
Confidence 9997 7777765 8999995332210 001111 112358888889999999999999987764 455666677
Q ss_pred CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCCcccEEEecceEEEc-cccceeceEEEEEEe
Q psy535 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKNRVKIVGGNITIE-GLRRVDFGYYECVVS 227 (460)
Q Consensus 150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~C~a~ 227 (460)
.+|.+.+.+.....+..|+.++|.|.+ .+.|.|. +.|+++++.+ .. .....++.|.|. ++...|.|.|+|.|.
T Consensus 230 ~~P~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~~i~W~~~~~~~-~~-~~~~~~~~L~i~~~v~~~d~G~Y~C~a~ 304 (331)
T 3u83_A 230 YEPEVTIEGFDGNWYLQRMDVKLTCKA---DANPPATEYHWTTLNGSL-PK-GVEAQNRTLFFKGPINYSLAGTYICEAT 304 (331)
T ss_dssp EEEEEEEECCCSCCBTTCCCEEEEEEE---EEESCCCEEEEEETTBSC-CT-TEEEETTEEEECSCCCGGGCEEEEEEEE
T ss_pred cCCeEEEecCCCceEeCCCeEEEEEeC---cCCCCCCEEEEEECCCcc-cc-cceecCcEEEEeCCCccccCeEEEEEEE
Confidence 788777655444467889999999999 6889898 9999955543 22 244567889999 899999999999999
Q ss_pred cccceeeeeeEEEEec
Q psy535 228 NEVATIVQAAQLVVEG 243 (460)
Q Consensus 228 n~~g~~~~~~~l~v~~ 243 (460)
|..|.....+.|.|..
T Consensus 305 N~~G~~~~~~~l~V~~ 320 (331)
T 3u83_A 305 NPIGTRSGQVEVNITE 320 (331)
T ss_dssp ETTEEEEEEEEECCBC
T ss_pred eccccceEEEEEEEec
Confidence 9999998888888764
No 62
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.95 E-value=1.5e-27 Score=211.68 Aligned_cols=227 Identities=18% Similarity=0.257 Sum_probs=167.8
Q ss_pred ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe-cCCeeEEcc---eeeeecceeeEEEEEEE---
Q psy535 8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE-FPAKVTFTP---TVQYLPFRLQGVVQCHI--- 80 (460)
Q Consensus 8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-~~p~~~~~~---~~~~~~~g~~~~l~C~~--- 80 (460)
.+.|+.+. +++|.|.+++.+|+|.|+|.|.|..|.. ...+.+.|. .+|.+...+ ....+.+|+++.|.|.+
T Consensus 53 ~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~ 130 (315)
T 1itb_B 53 QASRIHQH-KEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130 (315)
T ss_dssp TTSSSEEC-SSBEECTTCCGGGCSCCEECCCSSSCCC-CEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTT
T ss_pred cCCcEecc-CCeEEECCCChhhCEEEEEEEeCCceEE-EEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccc
Confidence 45667664 5699999999999999999999988764 444455543 345443322 23567789999999998
Q ss_pred ---ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE-cCCCCcce-eeEEEEEee-----C
Q psy535 81 ---KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY-NAHGTQGS-SGQMEVLVR-----K 150 (460)
Q Consensus 81 ---~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~~g~~~~-~~~~~v~v~-----~ 150 (460)
.+.|.+ .++|+|++..+... ..+ ....++.|.|.++..+|+|.|+|.|. |..|.... ...+.+.+. .
T Consensus 131 ~~~~g~p~~-~i~W~k~~~~l~~~-~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~ 207 (315)
T 1itb_B 131 FKNENNELP-KLQWYKDCKPLLLD-NIH-FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT 207 (315)
T ss_dssp TCTTTTCCC-CCEEEETTEECCCC-SSS-EEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCC
T ss_pred cccCCCCCC-EEEEEECCEECCCc-cce-EeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCC
Confidence 677665 79999999998642 223 34567789999999999999999999 67776522 334444333 5
Q ss_pred CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc------cEEE----------ecceEEEccc
Q psy535 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN------RVKI----------VGGNITIEGL 214 (460)
Q Consensus 151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~------~~~~----------~~~~l~i~~~ 214 (460)
+|.+...+.....+..|+.+.|.|.+ .+.|.|.+.|++++..+.... .... ....|.|.++
T Consensus 208 ~P~~~~~~~~~~~~~~g~~v~l~C~~---~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v 284 (315)
T 1itb_B 208 RPVIVSPANETMEVDLGSQIQLICNV---TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI 284 (315)
T ss_dssp CCEECSCCSEEEECCSSSCEEEEEEE---EECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSC
T ss_pred CCEEecCCCCcEEEeCCCcEEEEEEE---ecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeec
Confidence 67776555543468899999999999 689999999999543332221 1111 2237999999
Q ss_pred ccee-ceEEEEEEecccceeeeeeEEEEe
Q psy535 215 RRVD-FGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 215 ~~~~-~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
...| .|.|+|.|.|..|.....+.|.+.
T Consensus 285 ~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 285 ESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp CGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred CHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 9999 999999999999999988888764
No 63
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.95 E-value=9.5e-30 Score=253.91 Aligned_cols=313 Identities=19% Similarity=0.307 Sum_probs=0.0
Q ss_pred eEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcc---eeeeecceeeEEEEEEEecCCCC
Q psy535 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTP---TVQYLPFRLQGVVQCHIKANPTF 86 (460)
Q Consensus 11 r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~ 86 (460)
++.+..++.|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|..+|.+.... ....+.+|+.++|.|.+.+.|.+
T Consensus 374 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p 453 (772)
T 3v2a_R 374 NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCC
Confidence 4444455799999999999999999999988753 2456778888888764321 11237789999999999998876
Q ss_pred CeEEEeeCCee--------------------------------cCccccccEEEee-----cCeEEEeecCCCCCeEEEE
Q psy535 87 QYVTWTKDKRL--------------------------------LEPYQTKDIVVMQ-----NGSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 87 ~~v~W~~~~~~--------------------------------~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C 129 (460)
..++|++++.. +... ..+..... ...|.|.++ +|+|.|+|
T Consensus 454 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C 530 (772)
T 3v2a_R 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN-KNQFALIEGKNKTVSTLVIQAA--NVSALYKC 530 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEe-ccceeeccCcceEEEEEEEeec--ccCeEEEE
Confidence 44999997432 1100 01111111 135777766 79999999
Q ss_pred EEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-----
Q psy535 130 TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI----- 204 (460)
Q Consensus 130 ~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~----- 204 (460)
.|.|..|.... .+.|.|..+|.+...+.. .+..|+.+.|.|.+ .+.|.+.+.|++++...........
T Consensus 531 ~a~N~~g~~~~--~~~l~V~~~p~i~~~p~~--~~~~G~~v~l~C~~---~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~ 603 (772)
T 3v2a_R 531 EAVNKVGRGER--VISFHVTRGPEITLQPDM--QPTEQESVSLWCTA---DRSTFENLTWYKLGPQPLPIHVGELPTPVC 603 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEccccccce--eEEEEEECCceeeccCCc--ccccCCceEEEEec---cCCCCCCcEEEEcCCcccccccCccccccc
Confidence 99999887644 455556668877766653 46789999999999 7889999999996554332111100
Q ss_pred --------------ec-----ceEEEccccceeceEEEEEEecccceee--eeeEEEEec-CCCCCCCcee--eeeecce
Q psy535 205 --------------VG-----GNITIEGLRRVDFGYYECVVSNEVATIV--QAAQLVVEG-TQPHAPYNIT--GVATEFS 260 (460)
Q Consensus 205 --------------~~-----~~l~i~~~~~~~~g~y~C~a~n~~g~~~--~~~~l~v~~-~~p~~p~~~~--~~~~~~~ 260 (460)
.. ..|.|.++...|+|.|+|.|.|..+... ....+.|.. .+|....... ....+..
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~ 683 (772)
T 3v2a_R 604 KNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGES 683 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCC
Confidence 01 2389999999999999999999655433 233444421 1221111111 1233556
Q ss_pred EEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEc
Q psy535 261 VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338 (460)
Q Consensus 261 ~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~ 338 (460)
+.|.|.. .+.+.+. +.|++++.............+...|.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus 684 ~~l~C~~--~g~P~p~---v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 756 (772)
T 3v2a_R 684 IEVSCTA--SGNPPPQ---IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756 (772)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEEe--CccCCCe---EEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEEC
Confidence 7888873 4445443 67888765322111111112356899999999999999999999999887777777753
No 64
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.95 E-value=4e-25 Score=207.22 Aligned_cols=308 Identities=15% Similarity=0.143 Sum_probs=186.4
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC-----cceeeeEEEEec----CCeeEEcceeeeecceee
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE-----PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQ 73 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~ 73 (460)
..+|+++..+ ++|.|.+++.+|+|.|+|.+.+..|. .....+.|.|.. +|.+...+.. .+.+|+.
T Consensus 65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~g~~ 143 (475)
T 1iga_A 65 FRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC-STQPDGN 143 (475)
T ss_pred cCCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc-ccCCCCe
Confidence 4689998764 38999999999999999999997652 123456777763 3444433221 2368999
Q ss_pred EEEEEEEecC-CC-CCeEEEeeCCeecCccccccEE------EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 74 GVVQCHIKAN-PT-FQYVTWTKDKRLLEPYQTKDIV------VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 74 ~~l~C~~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
++|.|.+.+. |. +..|.|++++............ ....+.|.|..+..+|+|.|+|.|.|..+.. .+..+.
T Consensus 144 v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~v~ 222 (475)
T 1iga_A 144 VVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS-QDVTVP 222 (475)
T ss_pred EEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc-eeeeEe
Confidence 9999999987 43 3489999988543211111110 0112358888888899999999999987642 344444
Q ss_pred EEee------------------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC---CeeEEEcCCCccCCccc---
Q psy535 146 VLVR------------------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK---PTITWQRRDGVALPKNR--- 201 (460)
Q Consensus 146 v~v~------------------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~---~~~~W~~~~~~~~~~~~--- 201 (460)
+.|. .+|.+...+.....+..|+.++|.|.+ .+.++ +.+.| . ++.......
T Consensus 223 l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~---~g~~p~~~~~i~W-~-~~~~~~~~~~~~ 297 (475)
T 1iga_A 223 CPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTL---TGLRDASGVTFTW-T-PSSGKSAVQGPP 297 (475)
T ss_pred cccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEE---EcccCCCceEEEE-C-CCCcCCccccCc
Confidence 3331 244443333222245789999999998 45533 69999 4 433321110
Q ss_pred E------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCce-ee-----eeecceEEEEeecCC
Q psy535 202 V------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI-TG-----VATEFSVTLEWLPGY 269 (460)
Q Consensus 202 ~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~-~~-----~~~~~~~~l~w~~~~ 269 (460)
. ....+.|.|.++...|.|.|+|.|.|..|.......+.+.. ...+|... .. ...+..+.|.|...
T Consensus 298 ~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~-~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~- 375 (475)
T 1iga_A 298 ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSG-NTFRPEVHLLPPPSEELALNELVTLTCLAR- 375 (475)
T ss_pred eECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCC-CCCCCeEEEECCChHHhccCCceEEEEEEe-
Confidence 0 01234699999999999999999999988754444443211 12222211 11 12345688988743
Q ss_pred CCCCCceeeEEEEEEecCCCCee---eeeccCC---CC------ceEEEccCccCccEEEEEEEEcCCC
Q psy535 270 SGGPDLKQNYVIWYREQGNKDWL---PIPVTPP---GS------TQITINRLTPATTYEFQVVGKNELG 326 (460)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~------~~~~i~~l~~~~~~~~~~~a~n~~G 326 (460)
+.+++ ..-+.|++++...... ....... .. ..+.|......+.+.|.|.|.|...
T Consensus 376 -g~~P~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l 442 (475)
T 1iga_A 376 -GFSPK-DVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 442 (475)
T ss_pred -eeECC-CCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCC
Confidence 22221 1236788775422111 1100111 11 2355655556678999999999864
No 65
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.95 E-value=3e-25 Score=191.41 Aligned_cols=250 Identities=15% Similarity=0.132 Sum_probs=178.3
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
|.+...|....+.+|+.+.|.|.+.+.|.+..++|+++|..+.. .+..|.|.++..+|+|.|+|.+.|..+
T Consensus 2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 72 (262)
T 3rjd_A 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT---------STPSYRITSASVNDSGEYRCQRGLSGR 72 (262)
T ss_dssp CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEESSSCC
T ss_pred CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec---------cCCeEEEecCCcccCeEEEEEEecCCc
Confidence 66778888888999999999999998876657999999998853 245799999999999999999987654
Q ss_pred CcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccc
Q psy535 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRR 216 (460)
Q Consensus 137 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~ 216 (460)
.. .+.|.|..++.. ..+... .+..|+.+.|.|.+. .+.|.+.+.|++++. .+. .......|.|.++..
T Consensus 73 s~----~~~l~v~~~~~~-~~~~~~-~~~~g~~v~l~C~~~--~~~p~~~v~W~~~g~-~~~---~~~~~~~l~i~~~~~ 140 (262)
T 3rjd_A 73 SD----PIQLEIHRGWLL-LQVSSR-VFTEGEPLALRCHAW--KDKLVYNVLYYRNGK-AFK---FFHWNSNLTILKTNI 140 (262)
T ss_dssp CC----CEEEEEECSSEE-EEESCS-EEETTSCEEEEEEEG--GGCCCEEEEEEETTE-EEE---EEEECCCEEESSCCG
T ss_pred cc----cEEEEEeccceE-ecCCCe-EEecCCeEEEEEEcc--CCCCCceEEEEECCc-ccc---ccCCCCeEEEEECCh
Confidence 43 455666655543 333333 567899999999984 577888999999443 331 222356899999999
Q ss_pred eeceEEEEEEecccceeeeeeEEEEecCCCCCCCcee----eeeecceEEEEeecCCCCCCC-ceee-EEEEEEecCCCC
Q psy535 217 VDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT----GVATEFSVTLEWLPGYSGGPD-LKQN-YVIWYREQGNKD 290 (460)
Q Consensus 217 ~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~----~~~~~~~~~l~w~~~~~~~~~-~~~~-~~~~~~~~~~~~ 290 (460)
.|.|.|+|.+.|..+.......+.|...++ +|.... ....+..+.|.|... +.+. +... .+.|++++...
T Consensus 141 ~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~-~p~~~~~~~~~~~~g~~~~l~C~~~--~~p~~p~~~~~~~w~~~~~~~- 216 (262)
T 3rjd_A 141 SHNGTYHCSGMGKHRYTSAGISVTVKELFP-APVLNASVTSPLLEGNLVTLSCETK--LLLQRPGLQLYFSFYMGSKTL- 216 (262)
T ss_dssp GGCEEEEEEEESSSEEEEECEEEEEECSSC-CCEEEESSCSSEETTCCEEEEEECC--CCCC-----EEEEEEETTEEE-
T ss_pred hhCEEEEEEEeCCCCccccceEEEeccCCC-CCeEeecCceeecCCCeEEEEeEcc--cCCCCCCccEEEEEEeCCcEe-
Confidence 999999999999998888888888875322 222111 123456789999853 3332 2222 24566553311
Q ss_pred eeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCC-CCCCcEEE
Q psy535 291 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG-MLSNIVVV 336 (460)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~-~~s~~~~~ 336 (460)
. .......|.|.++...+.|.|.|.|.|..|.. ..|..+.+
T Consensus 217 ----~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l 258 (262)
T 3rjd_A 217 ----R-GRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258 (262)
T ss_dssp ----E-EEESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEE
T ss_pred ----c-ccCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEE
Confidence 1 11245689999999999999999999999964 33444444
No 66
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=212.58 Aligned_cols=209 Identities=14% Similarity=0.086 Sum_probs=150.6
Q ss_pred CCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc-
Q psy535 26 GSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK- 104 (460)
Q Consensus 26 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~- 104 (460)
+.+|+|.|+|.|.|..|......+.|.|..+|.+ .+....+.+|+++.|.|.+.+.++++.|+|+|++..+......
T Consensus 199 ~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~ 276 (423)
T 3qs7_E 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFE 276 (423)
T ss_dssp CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEE
T ss_pred ecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceee
Confidence 5789999999999999876455577777766654 4556778899999999999984443479999999887532110
Q ss_pred ------cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCC-cccccCCCCeEEEEeeee
Q psy535 105 ------DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE-AMYQRKVGESVDMHCEAQ 177 (460)
Q Consensus 105 ------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~ 177 (460)
.......+.|.|.++..+|+|.|+|.|.|. .+..+.|.|..+|.+...+. ....+..|+.+.|.|.+
T Consensus 277 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~-----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~- 350 (423)
T 3qs7_E 277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF- 350 (423)
T ss_dssp EEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE-----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEE-
T ss_pred cccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC-----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEE-
Confidence 001223357999999999999999999886 45667777788887776653 22367889999999999
Q ss_pred ccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecC
Q psy535 178 EAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244 (460)
Q Consensus 178 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~ 244 (460)
.+.|.|.+.|++++..+..........-.+........|+|.|+|.|.|..|....++.|.|...
T Consensus 351 --~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~ 415 (423)
T 3qs7_E 351 --KAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415 (423)
T ss_dssp --EEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----
T ss_pred --EEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecC
Confidence 78999999999954433222100000112222556778999999999999999999999988753
No 67
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.94 E-value=1.2e-26 Score=216.64 Aligned_cols=311 Identities=14% Similarity=0.145 Sum_probs=180.1
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC---------C--cceeeeEEEEec----CCeeEEcceeee
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG---------E--PQAAQAYLNVEF----PAKVTFTPTVQY 67 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~p~~~~~~~~~~ 67 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.|.+..| . .....+.|.|.. +|.+...+....
T Consensus 64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~ 143 (457)
T 1hzh_H 64 FQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSK 143 (457)
T ss_dssp TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSC
T ss_pred ccCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCcccc
Confidence 4679998764 2899999999999999999998765 1 123456788864 455544443445
Q ss_pred ecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 68 LPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 68 ~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
+.+|+.++|.|.+.+. |.++.|+|++++..+........ ...+ ..|.|.++..+| |.|+|.|.|..+....
T Consensus 144 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~ 221 (457)
T 1hzh_H 144 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV 221 (457)
T ss_dssp CCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEE-ECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEE
T ss_pred ccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCce-ECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcce
Confidence 6789999999999987 44358999999976432111111 1112 268999999999 9999999997665433
Q ss_pred eeEEEEE---------------eeCCCce-eeCCCcccccCCCCeEEEEeeeeccCCCCCC----eeEEEcCCCccCCcc
Q psy535 141 SGQMEVL---------------VRKPPAF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQKP----TITWQRRDGVALPKN 200 (460)
Q Consensus 141 ~~~~~v~---------------v~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~----~~~W~~~~~~~~~~~ 200 (460)
...+.+. +..+|.+ ...|.....+..|+.++|.|.+ .|.+++ .+.|++++.......
T Consensus 222 ~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~---~g~~p~p~~~~i~W~k~~~~~~~~~ 298 (457)
T 1hzh_H 222 DKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVV---VDVSHEDPEVKFNWYVDGVEVHNAK 298 (457)
T ss_dssp EEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEE---ECCCTTCCCCEEEEEETTEEECCCE
T ss_pred eEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEE---EcccCCCCceEEEEEeCCccccccc
Confidence 3222221 1124444 3333322126789999999999 566443 999999554332211
Q ss_pred c---EEEecceEEEcc---cccee---ceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-----eeecceEEEEee
Q psy535 201 R---VKIVGGNITIEG---LRRVD---FGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-----VATEFSVTLEWL 266 (460)
Q Consensus 201 ~---~~~~~~~l~i~~---~~~~~---~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-----~~~~~~~~l~w~ 266 (460)
. ....++.+.+.. +...| .|.|+|.|.|..+.......+.+......+|..... ......+.|.|.
T Consensus 299 ~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~ 378 (457)
T 1hzh_H 299 TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCL 378 (457)
T ss_dssp EEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEE
T ss_pred cccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEE
Confidence 1 111234444432 33445 999999999875544333223221111222221111 112334888887
Q ss_pred cCCCCCCCceeeEEEEEEecCCCCe-eeeec--cCCCC----ceEEEccCccCccEEEEEEEEcCCC
Q psy535 267 PGYSGGPDLKQNYVIWYREQGNKDW-LPIPV--TPPGS----TQITINRLTPATTYEFQVVGKNELG 326 (460)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~----~~~~i~~l~~~~~~~~~~~a~n~~G 326 (460)
.. +.+++ ..-+.|++++..... ..... ...+. ..+.+......+.|.|.|.|.|...
T Consensus 379 ~~--g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 442 (457)
T 1hzh_H 379 VK--GFYPS-DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 442 (457)
T ss_dssp EE--EEBSS-CCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EE--eEECC-CCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence 42 22222 113678876543211 11111 11111 1233333333568999999999753
No 68
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=205.29 Aligned_cols=269 Identities=14% Similarity=0.167 Sum_probs=179.2
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCCCCCeEEEEEEEc
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.+|.|. .|....+.+|++++|.|.+.+.++.+.++|+|+|..+... .++.. .....|.|.++..+|+|.|+|.+.|
T Consensus 6 ~~P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 82 (317)
T 2y25_A 6 TGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD--EKHDFKDGICTLLITEFSKKDAGIYEVILKD 82 (317)
T ss_dssp SCCEEE-EEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCS--CC-----CCEEEEETTCCSTTCSCEEEEEES
T ss_pred CCCcEe-eeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCC--CcEEEECCeEEEEEccCCcccCeEEEEEEEC
Confidence 356666 4445788899999999999887444589999999988642 22222 2234799999999999999999999
Q ss_pred CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC----------CCCCeeEEEcCCCccCCcccEE
Q psy535 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG----------TQKPTITWQRRDGVALPKNRVK 203 (460)
Q Consensus 134 ~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----------~p~~~~~W~~~~~~~~~~~~~~ 203 (460)
..|.. ...+.|.+..+|.+...+... .+..|+.+.|.|.+ .+ .|.+.+.|++++.......+..
T Consensus 83 ~~g~~--~~~~~l~v~~~~~~~~~~~~~-~~~~g~~~~l~c~~---~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~ 156 (317)
T 2y25_A 83 DRGKD--KSRLKLVDEAFKELMMEVCKK-IALSATDLKIQSTA---EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK 156 (317)
T ss_dssp SSCEE--EEEECCSTHHHHHHHHHHHHH-HHTCBCCCEEEECS---SEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEE
T ss_pred CCCcE--EEEEEEEEecCccccccCCce-ecccCCCeEEEeec---cccEEEEEeccCCCCcEEEEEECCEECCCCCCeE
Confidence 88764 334445444444333222222 45677777777776 44 6889999999665554445544
Q ss_pred Eec----ceEEEccccceeceEEEEEEecccceeeeeeEEEEec----------------CCCCCCCce------eeeee
Q psy535 204 IVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG----------------TQPHAPYNI------TGVAT 257 (460)
Q Consensus 204 ~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~----------------~~p~~p~~~------~~~~~ 257 (460)
... ..|.|.++...|.|.|+|.+.|..|.......+.+.. .....|... .....
T Consensus 157 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 236 (317)
T 2y25_A 157 TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 236 (317)
T ss_dssp EEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEET
T ss_pred EeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEc
Confidence 432 2499999999999999999999999887777765431 011111111 12234
Q ss_pred cceEEEEeecCCCCCCCceeeEEEEEEecCCC---CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcE
Q psy535 258 EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 334 (460)
Q Consensus 258 ~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~ 334 (460)
+..+.|.|.. .+.+.+. +.|++++... ....+.........|.|.++...+.|.|+|.|.|..|....+..+
T Consensus 237 g~~~~l~C~~--~g~p~p~---i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l 311 (317)
T 2y25_A 237 GKALNLTCNV--WGDPPPE---VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 311 (317)
T ss_dssp TSBBCEEEEE--ECSSCCE---EEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEEE--ecCCCCE---EEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEE
Confidence 5678888874 3445443 7788775421 111111111233589999999999999999999999976555555
Q ss_pred EEE
Q psy535 335 VVK 337 (460)
Q Consensus 335 ~~~ 337 (460)
.+.
T Consensus 312 ~V~ 314 (317)
T 2y25_A 312 SVF 314 (317)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 69
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=207.80 Aligned_cols=228 Identities=22% Similarity=0.355 Sum_probs=167.8
Q ss_pred cceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE--EcceeeeecceeeEEEEEE-----Ee
Q psy535 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT--FTPTVQYLPFRLQGVVQCH-----IK 81 (460)
Q Consensus 9 ~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~-----~~ 81 (460)
..|+.. .+++|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|..++... .......+.+|+++.|.|. +.
T Consensus 73 ~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~ 150 (339)
T 3o4o_C 73 ETRMWA-QDGALWLLPALQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTR 150 (339)
T ss_dssp SSCEEE-ETTEEEESSBCTTCCEEEECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCC
T ss_pred cccEEe-eCCeEEECCCCcccCEEEEEEEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCccccc
Confidence 456664 67899999999999999999999988754 677888888765431 2233346788999999999 67
Q ss_pred cCCCCCeEEEeeCCeecCccccccEEEeec-CeEEEeecCCCCCeEEEEEEEcCCCCcc--eeeEEEEEeeC-----CCc
Q psy535 82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNAHGTQG--SSGQMEVLVRK-----PPA 153 (460)
Q Consensus 82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~y~C~~~~~~g~~~--~~~~~~v~v~~-----~p~ 153 (460)
+.|.+ .+.|++++..+... ..++....+ +.|.|.++..+|+|.|+|.|.|..|... .+..+.|.|.. +|.
T Consensus 151 g~p~~-~v~W~k~g~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~ 228 (339)
T 3o4o_C 151 DKTDV-KIQWYKDSLLLDKD-NEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPV 228 (339)
T ss_dssp SSSCC-CBCCEESSCBCCTT-CSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCE
T ss_pred CCCCc-eEEEecCCeeCCCC-CceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCE
Confidence 77665 79999999988643 234444433 4799999999999999999999877432 34555666653 455
Q ss_pred eeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccC---------CcccEEEe-cc------eEEEccccc
Q psy535 154 FTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVAL---------PKNRVKIV-GG------NITIEGLRR 216 (460)
Q Consensus 154 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~---------~~~~~~~~-~~------~l~i~~~~~ 216 (460)
+...+... .+..|+.+.|.|.+....+.| .+.+.|++++..+. ...+.... .+ .|.|.++..
T Consensus 229 i~~~~~~~-~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~ 307 (339)
T 3o4o_C 229 IISPLKTI-SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTR 307 (339)
T ss_dssp ECCCSCCC-CCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCC
T ss_pred EecCCcee-EeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEech
Confidence 55544443 688999999999984335777 88999998543221 11111111 22 699999999
Q ss_pred eec-eEEEEEEecccceeeeeeEEEE
Q psy535 217 VDF-GYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 217 ~~~-g~y~C~a~n~~g~~~~~~~l~v 241 (460)
.|. |.|+|.|.|..|.......+.+
T Consensus 308 ~d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 308 EDLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp CSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred hhcCccEEEEEEeccCceEEEEEhhH
Confidence 997 9999999999999887776544
No 70
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.94 E-value=3.2e-27 Score=219.01 Aligned_cols=311 Identities=12% Similarity=0.100 Sum_probs=187.8
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec----CCeeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
.++|+.+..+ ++|.|.+++.+|+|.|+|.|.+..+.. ...+.|.|.. +|.+...+....+.+|+.++|.|
T Consensus 63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C 141 (434)
T 1igy_B 63 FKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYW-GQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGC 141 (434)
T ss_dssp GTTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCC-CCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEE
T ss_pred ccccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEcccccc-CCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEE
Confidence 4679998764 389999999999999999999864332 4556777763 45444333233457899999999
Q ss_pred EEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE-----e
Q psy535 79 HIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL-----V 148 (460)
Q Consensus 79 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~-----v 148 (460)
.+.+. |.+..|.|++++..+......... ....+.|.|.++..+| |.|+|.|.|..+.......+.+. |
T Consensus 142 ~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v 220 (434)
T 1igy_B 142 LVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKP 220 (434)
T ss_dssp EEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCC
T ss_pred EEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCcc
Confidence 99987 444489999998764211111100 0112458999999889 99999999988875444333221 0
Q ss_pred -----eCCCceeeCCCcccc-cCCCCeEEEEeeeeccCCCC----CCeeEEEcCCCccCCcccE---E------EecceE
Q psy535 149 -----RKPPAFTIKPEAMYQ-RKVGESVDMHCEAQEAEGTQ----KPTITWQRRDGVALPKNRV---K------IVGGNI 209 (460)
Q Consensus 149 -----~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~~p----~~~~~W~~~~~~~~~~~~~---~------~~~~~l 209 (460)
...|.+.+.+..... +..|+.++|.|.+ .+.+ .+.+.|++++......... . ...+.|
T Consensus 221 ~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~---~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L 297 (434)
T 1igy_B 221 CICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVV---VDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSAL 297 (434)
T ss_dssp CCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEE---CCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCE
T ss_pred ccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEE---eccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEE
Confidence 000333333322212 7899999999999 5663 4589999966543221110 0 113468
Q ss_pred EEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCcee-e----eeecceEEEEeecCCCCCCCceeeEEEEEE
Q psy535 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT-G----VATEFSVTLEWLPGYSGGPDLKQNYVIWYR 284 (460)
Q Consensus 210 ~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~-~----~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~ 284 (460)
.|.++...|.|.|+|.|.|..|.......+.+......+|.... . ......++|.|... +.+++ ..-+.|++
T Consensus 298 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~--g~~P~-~~~v~W~k 374 (434)
T 1igy_B 298 PIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMIT--DFFPE-DITVEWQS 374 (434)
T ss_dssp ECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEE--EEBCS-CEEEEEEE
T ss_pred EECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEE--eeECC-CeEEEEEE
Confidence 99999999999999999998886533222222111122222211 1 11344688998742 22221 12367888
Q ss_pred ecCCCCee-eeeccCCCCc------eEEEccCccCccEEEEEEEEcCCC
Q psy535 285 EQGNKDWL-PIPVTPPGST------QITINRLTPATTYEFQVVGKNELG 326 (460)
Q Consensus 285 ~~~~~~~~-~~~~~~~~~~------~~~i~~l~~~~~~~~~~~a~n~~G 326 (460)
++...... .......... .+.|......+.|.|.|.|.|...
T Consensus 375 ~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 423 (434)
T 1igy_B 375 DGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 423 (434)
T ss_dssp TTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred CCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence 76543211 1111111121 244444444568999999999864
No 71
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.94 E-value=1.9e-26 Score=206.44 Aligned_cols=263 Identities=18% Similarity=0.260 Sum_probs=116.7
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
.+....+.+|++++|.|.+.+.++.+.++|+|+|..+.. ..++. ..++.|.|.+++.+|+|.|+|.+.|. |...
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~--~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~-- 87 (334)
T 1ry7_B 14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP--SERVL-VGPQRLQVLNASHEDSGAYSCRQRLT-QRVL-- 87 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCC--cccEE-eccceEEEeecccccCEEEEEEEEeC-CeEE--
Confidence 477788899999999999998754447999999998753 23332 34678999999999999999999988 5543
Q ss_pred eEEEEEeeCC----------------------CceeeCCC---cccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc
Q psy535 142 GQMEVLVRKP----------------------PAFTIKPE---AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196 (460)
Q Consensus 142 ~~~~v~v~~~----------------------p~~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~ 196 (460)
..+.|.|..+ |.+..... ....+..|+.+.|.|.+ .+.|.+.+.|++++...
T Consensus 88 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~---~g~p~~~v~W~~~~~~~ 164 (334)
T 1ry7_B 88 CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA---AGNPTPSISWLKNGREF 164 (334)
T ss_dssp -------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCC---CCSSCCEEECCBTTBCC
T ss_pred EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEc---cCCCCCeEEEEECCEEC
Confidence 3444444433 33321110 11256789999999998 78899999999955433
Q ss_pred CCcccE---E--EecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCce------eeeeecceEEEEe
Q psy535 197 LPKNRV---K--IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI------TGVATEFSVTLEW 265 (460)
Q Consensus 197 ~~~~~~---~--~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~------~~~~~~~~~~l~w 265 (460)
....+. . .....|.|.++...|.|.|+|.+.|..|.......|.|...++.+|... .....+..+.|.|
T Consensus 165 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C 244 (334)
T 1ry7_B 165 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHC 244 (334)
T ss_dssp CTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECC
T ss_pred cccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEE
Confidence 322211 1 1234799999999999999999999999988888888876444333221 1223455788888
Q ss_pred ecCCCCCCCceeeEEEEEEe----cCCCC---eeeeecc--------CCCCceEEEccCccCccEEEEEEEEcCCCCCCC
Q psy535 266 LPGYSGGPDLKQNYVIWYRE----QGNKD---WLPIPVT--------PPGSTQITINRLTPATTYEFQVVGKNELGDGML 330 (460)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~--------~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~ 330 (460)
.. .+.+.+ .+.|++. +.... ....... ......|.|.++...+.|.|+|.|.|..|....
T Consensus 245 ~~--~g~p~p---~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 319 (334)
T 1ry7_B 245 KV--YSDAQP---HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH 319 (334)
T ss_dssp CC--BCSSCE---EEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEE
T ss_pred EE--ecCCCC---eEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEE
Confidence 74 344443 3678873 22110 0000000 011237999999999999999999999998766
Q ss_pred CCcEEEEc
Q psy535 331 SNIVVVKT 338 (460)
Q Consensus 331 s~~~~~~~ 338 (460)
+..+.+..
T Consensus 320 ~~~l~V~~ 327 (334)
T 1ry7_B 320 SAWLVVLP 327 (334)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 66666653
No 72
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.94 E-value=6.4e-25 Score=192.25 Aligned_cols=251 Identities=15% Similarity=0.187 Sum_probs=175.5
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+|.+...+....+.+|++++|.|.+.+ .+.|++++..+. .....++.|.|.++..+|+|.|+|.+.|
T Consensus 11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~-----~i~W~~~~~~~~------~~~~~~~~L~i~~~~~~d~G~Y~C~~~n- 78 (290)
T 2o26_X 11 SPPSIHPAQSELIVEAGDTLSLTCIDPD-----FVRWTFKTYFNE------MVENKKNEWIQEKAEATRTGTYTCSNSN- 78 (290)
T ss_dssp -CCEESSCSSEEEEETTSCEEEEEECTT-----EEEEEEECSSSC------EEEECSSEEEETTCCGGGCEEEEEEESS-
T ss_pred CCCEEeCCCCeEEEcCCCcEEEEECCCC-----cEEEecCCccee------eecCCCceEEEeccCHHhCeEEEEEeeC-
Confidence 4677777778888999999999999877 699999998761 1223347899999999999999999998
Q ss_pred CCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCCc-ccEEEe-cceEEE
Q psy535 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVALPK-NRVKIV-GGNITI 211 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~-~~~~~~-~~~l~i 211 (460)
|. +..+.|.|..+|.+...+... .+..|+.+.|.|.+ .+ |. +.+.|++.++..+.. .++... ...|.|
T Consensus 79 -g~---~~~~~l~V~~~~~~~~~~~~~-~~~~g~~v~l~C~~---~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i 149 (290)
T 2o26_X 79 -GL---TSSIYVFVRDPAKLFLVGLPL-FGKEDSDALVRCPL---TD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITI 149 (290)
T ss_dssp -SC---EEEEEEEEECSSCCBCCCCCE-EEETTSCEEECCCB---SC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEE
T ss_pred -Cc---cEEEEEEEeCCCcccccccce-EEecCCeEEEeCcC---CC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEE
Confidence 43 556677777777766555444 67789999999998 54 77 899995435555543 333333 468999
Q ss_pred ccccceece-EEEEEEecccceee-eeeEEEEecCCCCCCCcee-----eeeecceEEEEeecCCCCCCCceeeEEEEEE
Q psy535 212 EGLRRVDFG-YYECVVSNEVATIV-QAAQLVVEGTQPHAPYNIT-----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYR 284 (460)
Q Consensus 212 ~~~~~~~~g-~y~C~a~n~~g~~~-~~~~l~v~~~~p~~p~~~~-----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~ 284 (460)
.++...|.| .|+|.|.|..+... ....+.|...+..+|.... ....+..+.|.|... +.+.+ .-+.|++
T Consensus 150 ~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~--g~p~p--~~i~W~~ 225 (290)
T 2o26_X 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK--DVSTS--VNSMWLK 225 (290)
T ss_dssp ESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEE--ESSTT--CEEEEEE
T ss_pred ecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEe--cCCcc--eeEEEec
Confidence 999999999 99999999866533 3466666532222332211 233456788999853 33333 1267777
Q ss_pred ecCCC----Ceee---ee--ccCCCCceEEEccCccCccEEEEEEEEcCCCCCCC
Q psy535 285 EQGNK----DWLP---IP--VTPPGSTQITINRLTPATTYEFQVVGKNELGDGML 330 (460)
Q Consensus 285 ~~~~~----~~~~---~~--~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~ 330 (460)
++... .... .. ........|.|.++...+.|.|.|.|.|..|....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~ 280 (290)
T 2o26_X 226 MNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV 280 (290)
T ss_dssp ESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEE
T ss_pred CCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEE
Confidence 76541 1110 00 01113457999999999999999999999986533
No 73
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.94 E-value=1.1e-25 Score=200.58 Aligned_cols=257 Identities=17% Similarity=0.189 Sum_probs=173.7
Q ss_pred eeeeecceeeEEEEEEEecCC--------CCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCe-EEEEEEEcC
Q psy535 64 TVQYLPFRLQGVVQCHIKANP--------TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG-RYTCTPYNA 134 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~--------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~ 134 (460)
....+.+|+++.|.|.+.+.+ +.+.|+|+|++..+... .+. ..++.|.|.+++.+|+| .|+|.|.|.
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~--~~~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~ 112 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPL--NRR--VKNGDLWIANYTSNDSHRRYLCTVTTK 112 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEEC--STT--EETTEEEESSCCGGGGGCCEEEEEECT
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCcccc--Cce--eecceEEEcCCChHhCCCcEEEEEEeC
Confidence 455688999999999998853 23479999999876531 222 45788999999999999 999999998
Q ss_pred CCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccC-CcccEEEecceEEEc
Q psy535 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVAL-PKNRVKIVGGNITIE 212 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~-~~~~~~~~~~~l~i~ 212 (460)
.|..... .+.+.+..+|.+...+... .+..|+.+.|.|.+ .+.| .+.+.|++++.... ...++...+..|.|.
T Consensus 113 ~g~~~~~-~~~~v~~~~p~~~~~~~~~-~~~~G~~v~L~C~~---~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~ 187 (329)
T 3oq3_B 113 NGDCVQG-IVRSHIRKPPSCIPETYEL-GTHDKYGIDLYCGI---LYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIH 187 (329)
T ss_dssp TSCEEEE-EEEEEECCCCSCEEEEEET-TSSTTTCEEEECCC---CSCCCCCEEEEEETTEECCCSSSSEEEETTEEEEC
T ss_pred CCceeeE-EEEEEEcCCCcEeccccce-EEeCCCcEEEEecc---CCCCCCceEEEEECCccCCCCCceEecCCCEEEEe
Confidence 8764333 2224455566644433333 56789999999998 7888 89999999554442 244555567899999
Q ss_pred cccceeceEEEEEEecc--cceeeee----eEEEEecCCCC-----CCCceeeeeecceEEEEeecCCCCC-CCceeeEE
Q psy535 213 GLRRVDFGYYECVVSNE--VATIVQA----AQLVVEGTQPH-----APYNITGVATEFSVTLEWLPGYSGG-PDLKQNYV 280 (460)
Q Consensus 213 ~~~~~~~g~y~C~a~n~--~g~~~~~----~~l~v~~~~p~-----~p~~~~~~~~~~~~~l~w~~~~~~~-~~~~~~~~ 280 (460)
++...|+|.|+|.|.|. .|..... ..|.|...+.. .|.. .....+..+.|.|....... ++++ .+
T Consensus 188 ~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~-~~v~~G~~~~l~C~~~g~p~~~~~i--~v 264 (329)
T 3oq3_B 188 NPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPK-INVTIGEPANITCTAVSTSLLVDDV--LI 264 (329)
T ss_dssp SCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSE-EEECTTSCEEEEEEEEETTCCTTCC--EE
T ss_pred ecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCe-eEEecCCCEEEEEEEEECCCCCCCc--EE
Confidence 99999999999999987 5543333 56667643311 1111 12334567888888432221 1221 35
Q ss_pred EEEEecCCC-Ceee---ee---ccCCCCceEEEccCccCccE-EEEEEEEcCCCCCCCCC
Q psy535 281 IWYREQGNK-DWLP---IP---VTPPGSTQITINRLTPATTY-EFQVVGKNELGDGMLSN 332 (460)
Q Consensus 281 ~~~~~~~~~-~~~~---~~---~~~~~~~~~~i~~l~~~~~~-~~~~~a~n~~G~~~~s~ 332 (460)
.|++++... .... .. ........|.|.++...+.| .|.|.|.|..|....+.
T Consensus 265 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~ 324 (329)
T 3oq3_B 265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT 324 (329)
T ss_dssp EEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEE
T ss_pred EEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEE
Confidence 777765431 1000 00 00013467999999999999 99999999998654443
No 74
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}
Probab=99.93 E-value=6.3e-26 Score=218.95 Aligned_cols=342 Identities=16% Similarity=0.217 Sum_probs=215.8
Q ss_pred EcceeeeecceeeEEEEEEEe-------cCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535 61 FTPTVQYLPFRLQGVVQCHIK-------ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~-------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
+.|.+..+..|++++|.|.+. +.+.+ .|.|+++|..+.... .++.....+.|.|.++...|++ |+|.+..
T Consensus 8 i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~-~i~W~~~~~~i~~~~-~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~ 84 (589)
T 3l5h_A 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHFTIPKEQ-YTIINRTASSVTFTDIASLNIQ-LTCNILT 84 (589)
T ss_dssp CSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTT-TCCCBCSSSBSCGGG-CBCCSSSCCBCCCCCCCSSCCC-CCCC-CC
T ss_pred EecCCCEEeCCCCEEEEEEEeCccCcccccccc-ceEEEeCCEECChHH-ccccCCcEeEEEEecCCCccee-eEEeccc
Confidence 356677788999999999997 43333 699999997775422 1211122347999999988765 7798763
Q ss_pred CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-------------cc
Q psy535 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-------------KN 200 (460)
Q Consensus 134 ~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-------------~~ 200 (460)
..........+.|.+..||. ....|.|.. .+.....+.|......... ..
T Consensus 85 ~~~~~~~~~~~~l~v~~pP~--------------~P~nl~c~~---~~~~~~~~~W~~~~~~~~~~~y~l~~~~~~~~~~ 147 (589)
T 3l5h_A 85 FGQLEQNVYGITIISGLPPE--------------KPKNLSCIV---NEGKKMRCEWDGGRETHLETNFTLKSEWATHKFA 147 (589)
T ss_dssp TTCC-CCCCCCCCCC-CCCC--------------CCEEEEEEE---ETTSCEEEEEECCSCCSSCEEEEECCBCSSSBCC
T ss_pred CCCcccEEEeEEEeccCCCC--------------CCEeeEEEE---CCCceEEEEECCCCcCCcCceEEEEEEEcCCCcc
Confidence 22111112223344444542 223444544 2223344445432111000 00
Q ss_pred cEEEe---cceEEEc-cccceeceEEEEEEecccceeeee-eEEEEe-cCCCCCCCceee---eeecceEEEEeecCCCC
Q psy535 201 RVKIV---GGNITIE-GLRRVDFGYYECVVSNEVATIVQA-AQLVVE-GTQPHAPYNITG---VATEFSVTLEWLPGYSG 271 (460)
Q Consensus 201 ~~~~~---~~~l~i~-~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~-~~~p~~p~~~~~---~~~~~~~~l~w~~~~~~ 271 (460)
..... .....+. .+.....+.|+|.|.|..|..... ..+... ..+|.+|.++.. ......+.|+|.++...
T Consensus 148 ~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~ 227 (589)
T 3l5h_A 148 DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK 227 (589)
T ss_dssp CEECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGG
T ss_pred cCCCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCC
Confidence 00000 1123333 455666788999999999875322 222211 125777777665 24667999999987654
Q ss_pred CCCceeeEEEEEEecCCCCeeeeecc--CCCCceEEEccCccCccEEEEEEEEcCCCCCCC---CCcEEEEccCCCC-CC
Q psy535 272 GPDLKQNYVIWYREQGNKDWLPIPVT--PPGSTQITINRLTPATTYEFQVVGKNELGDGML---SNIVVVKTKGPKP-GP 345 (460)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~---s~~~~~~~~~~~P-~~ 345 (460)
+.. +..|.+.|+..+...|...... ......+.+.+|.+++.|.|++.|.|..|.+.+ |..+.+.+.+.+| .+
T Consensus 228 ~~~-~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~ 306 (589)
T 3l5h_A 228 SVI-ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKA 306 (589)
T ss_dssp GTS-CEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSC
T ss_pred Cee-eEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCC
Confidence 444 4799999998887778765432 224578999999999999999999999987655 6677777777777 57
Q ss_pred CcceEEE----eec-ceEEEEecCC--CCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeecc
Q psy535 346 PRNVSVT----EVN-NGFVISWQPP--LERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417 (460)
Q Consensus 346 p~~~~~~----~~~-~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (460)
|..+... ..+ +++.|.|+++ ...++.+.+|+|+|+..+. |..
T Consensus 307 p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~~~------------------------------ 356 (589)
T 3l5h_A 307 PSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN------------------------------ 356 (589)
T ss_dssp CCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCCCB------------------------------
T ss_pred CcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCcee------------------------------
Confidence 7766644 223 5899999974 4557899999999976443 110
Q ss_pred CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455 (460)
Q Consensus 418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~ 455 (460)
.......+++ |.+++.|.|+|.|.|..|.|+++...
T Consensus 357 ~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~~ 392 (589)
T 3l5h_A 357 YTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLT 392 (589)
T ss_dssp CCCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCCC
T ss_pred eccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEEE
Confidence 0122334444 88999999999999999999888643
No 75
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.93 E-value=1.2e-24 Score=192.79 Aligned_cols=269 Identities=18% Similarity=0.192 Sum_probs=169.4
Q ss_pred eEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEE
Q psy535 49 AYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128 (460)
Q Consensus 49 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 128 (460)
+...+..+|.+...|. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+.... ......+.|.|.+++.+|+|.|+
T Consensus 17 ~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~--~~~~W~k~g~~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~ 90 (316)
T 3vh8_G 17 SHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHRF--NNFMLYKEDRIHIPIF---HGRIFQESFNMSPVTTAHAGNYT 90 (316)
T ss_dssp -------CCEEEEESC-SEEETTSCEEEEEEBTTBC--CSEEEEESSCSSSCHH---HHCCBSSCEEECSCCGGGCEEEE
T ss_pred cccCCCCCCEeeccCC-CccCCCCCEEEEEEccCCC--ceEEEEeCCCccceee---cCCcceEEEEECCCCcccCeEEE
Confidence 3444556788888887 5678999999999998873 3699999998764311 11124567999999999999999
Q ss_pred EEEEcCCC---CcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE
Q psy535 129 CTPYNAHG---TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV 202 (460)
Q Consensus 129 C~~~~~~g---~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~ 202 (460)
|.|.+..+ ....+..+.|.|.. +|.+...+.. .+..|+.++|.|.+ . .+.+.+.|++++.........
T Consensus 91 C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~--~v~~G~~v~L~C~~---~-~~~~~~~w~k~g~~~~~~~~~ 164 (316)
T 3vh8_G 91 CRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP--LVKSGERVILQCWS---D-IMFEHFFLHKEGISKDPSRLV 164 (316)
T ss_dssp EEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS--EEETTCCEEEEEEE---S-SCCSEEEEEETTCCSCCEEEE
T ss_pred EEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC--ccCCCCeEEEEEcC---C-CCCcEEEEEECCCccccceee
Confidence 99986432 22344556666643 4555555544 36789999999997 3 356789999955543322111
Q ss_pred E-----EecceEEEccccceeceEEEEEEeccccee-----eeeeEEEEecCCCCCCCcee----eeeecceEEEEeecC
Q psy535 203 K-----IVGGNITIEGLRRVDFGYYECVVSNEVATI-----VQAAQLVVEGTQPHAPYNIT----GVATEFSVTLEWLPG 268 (460)
Q Consensus 203 ~-----~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-----~~~~~l~v~~~~p~~p~~~~----~~~~~~~~~l~w~~~ 268 (460)
. .....|.|.++...|+|.|+|.|.|..|.. +....|.|... +.+|.... ....+..++|.|...
T Consensus 165 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~-~~~p~i~~~~~~~v~~G~~v~L~C~~~ 243 (316)
T 3vh8_G 165 GQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP-YEKPSLSAQPGPKVQAGESVTLSCSSR 243 (316)
T ss_dssp CEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS-SCCCEEEEESCSCCCTTSCCEEEEEES
T ss_pred eeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCC-CCCCeEEeCCCCeecCCCcEEEEEECC
Confidence 1 134579999999999999999999987742 44456666542 22232211 123466889999853
Q ss_pred CCCCCCceeeEEEEEEecCCCCeeeee---ccCCCCceEEEccCccCccEEEEEEEEcCCCC---CCCCCcEEEEc
Q psy535 269 YSGGPDLKQNYVIWYREQGNKDWLPIP---VTPPGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKT 338 (460)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~---~~~s~~~~~~~ 338 (460)
.+.+ .+.|++++......... ........|.|.++. +.|.|+|.|.|..+. +..|..+.+..
T Consensus 244 ---~~~~---~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 311 (316)
T 3vh8_G 244 ---SSYD---MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSV 311 (316)
T ss_dssp ---SCCS---EEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC--
T ss_pred ---CCCc---EEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEE
Confidence 2322 26788876543322111 111122578999998 999999999998763 45666666544
No 76
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=99.93 E-value=6.4e-25 Score=182.04 Aligned_cols=191 Identities=23% Similarity=0.299 Sum_probs=152.4
Q ss_pred CCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccC---CCCceEEEccCccCccEEEEEE
Q psy535 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP---PGSTQITINRLTPATTYEFQVV 320 (460)
Q Consensus 244 ~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~ 320 (460)
.+|.+|.++.......++.|+|.++...+..++.+|.+.++..+...|....... .....+.+.+|.+++.|.|+|.
T Consensus 7 ~~P~~P~~~~~~~~~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 86 (209)
T 2vkw_A 7 DTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA 86 (209)
T ss_dssp CCCCCCEEEEEEECSSCEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEEEE
T ss_pred CCCcCCcccEeeeccCeEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEEEEEE
Confidence 4677788877655555799999988665665568999999988777776654321 1245899999999999999999
Q ss_pred EEcCCCCCCCCCcEEEEccCC-CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcc
Q psy535 321 GKNELGDGMLSNIVVVKTKGP-KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398 (460)
Q Consensus 321 a~n~~G~~~~s~~~~~~~~~~-~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~ 398 (460)
|.|..|.+.++..+.+.+... +|.+|.++.+...+ +++.|+|++|.+.++++.+|.|+|+....
T Consensus 87 A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~-------------- 152 (209)
T 2vkw_A 87 ALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS-------------- 152 (209)
T ss_dssp EEETTEECCCCCCEEEECCCSCSCCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTS--------------
T ss_pred EEcCCcccCCcccccccccCCCCCCCCcccccccccCCeEEEEEECcccCCCCCceEEEEEECCCC--------------
Confidence 999999999999988887765 68899888877665 69999999997778899999999997221
Q ss_pred cccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
.|..........+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++++
T Consensus 153 ------------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~ 202 (209)
T 2vkw_A 153 ------------EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA 202 (209)
T ss_dssp ------------CCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC-
T ss_pred ------------CCceeeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhhh
Confidence 12222222346678999999999999999999999999999999887763
No 77
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=200.38 Aligned_cols=274 Identities=16% Similarity=0.200 Sum_probs=180.8
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEe-------cCCCCCeEEEeeCCeec--CccccccEEEeecCeEEEeecCCCCC
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIK-------ANPTFQYVTWTKDKRLL--EPYQTKDIVVMQNGSLLFTRVNQNHQ 124 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~-------~~~~~~~v~W~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~ 124 (460)
...|.+...|....+.+|+++.|.|.+. +.|.+ .|.|++++..+ ......++ ...++.|.|.++..+|+
T Consensus 16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~ 93 (339)
T 3o4o_C 16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRI-NLTWHKNDSARTVPGEEETRM-WAQDGALWLLPALQEDS 93 (339)
T ss_dssp --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCC-BCCCEESSCCSCCSCCSSSCE-EEETTEEEESSBCTTCC
T ss_pred hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCc-eEEEEECCCCcccCccccccE-EeeCCeEEECCCCcccC
Confidence 4567788888889999999999999997 66655 79999999874 22212333 35678999999999999
Q ss_pred eEEEEEEEcCCCCcceeeEEEEEeeCCCcee--eCCCcccccCCCCeEEEEeeeec--cCCCCCCeeEEEcCCCccCCc-
Q psy535 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT--IKPEAMYQRKVGESVDMHCEAQE--AEGTQKPTITWQRRDGVALPK- 199 (460)
Q Consensus 125 G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~--~~~~~~~~~~~g~~~~l~C~~~~--~~~~p~~~~~W~~~~~~~~~~- 199 (460)
|.|+|.+.|..|.. ...+.|.|..++... ...... .+..|+.+.|.|.+.. ..+.|.+.+.|++++..+...
T Consensus 94 G~Y~C~~~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~ 170 (339)
T 3o4o_C 94 GTYVCTTRNASYCD--KMSIELRVFENTDAFLPFISYPQ-ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN 170 (339)
T ss_dssp EEEECCEEETTEEE--EEEEEEEEECSCGGGHHHHCEEE-EEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC
T ss_pred EEEEEEEECCcceE--EEEEEEEEEcCCCccccccccce-EEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC
Confidence 99999999987754 445556666555422 111112 5678999999999311 168889999999955433322
Q ss_pred ccEEEec--ceEEEccccceeceEEEEEEecccc----eeeeeeEEEEecCCCC-CCCcee-----eeeecceEEEEeec
Q psy535 200 NRVKIVG--GNITIEGLRRVDFGYYECVVSNEVA----TIVQAAQLVVEGTQPH-APYNIT-----GVATEFSVTLEWLP 267 (460)
Q Consensus 200 ~~~~~~~--~~l~i~~~~~~~~g~y~C~a~n~~g----~~~~~~~l~v~~~~p~-~p~~~~-----~~~~~~~~~l~w~~ 267 (460)
.+..... +.|.|.++...|.|.|+|.+.|..| .......|.|...++. +|..+. ....+..+.|.|..
T Consensus 171 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~ 250 (339)
T 3o4o_C 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKV 250 (339)
T ss_dssp SSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCE
T ss_pred ceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEE
Confidence 3444443 4799999999999999999999887 4556677777643221 222111 12235567777764
Q ss_pred CC-CCCCCceeeEEEEEEecCCCC-------eee---eeccCCCC----ceEEEccCccCcc-EEEEEEEEcCCCCCCCC
Q psy535 268 GY-SGGPDLKQNYVIWYREQGNKD-------WLP---IPVTPPGS----TQITINRLTPATT-YEFQVVGKNELGDGMLS 331 (460)
Q Consensus 268 ~~-~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~----~~~~i~~l~~~~~-~~~~~~a~n~~G~~~~s 331 (460)
.. .+.+.+ ..+.|++++.... ... ......+. ..|.|.++...+. |.|.|.|.|..|.....
T Consensus 251 ~~~~g~P~~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~ 328 (339)
T 3o4o_C 251 FLGTGTPLT--TMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328 (339)
T ss_dssp EESSSCCSS--CEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCB
T ss_pred ECCCCCCCC--ceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEE
Confidence 11 333412 2355665543211 000 01111111 1699999999997 99999999999976554
Q ss_pred CcE
Q psy535 332 NIV 334 (460)
Q Consensus 332 ~~~ 334 (460)
..+
T Consensus 329 ~~~ 331 (339)
T 3o4o_C 329 TTV 331 (339)
T ss_dssp CCC
T ss_pred EEh
Confidence 443
No 78
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.93 E-value=4.6e-25 Score=195.44 Aligned_cols=257 Identities=16% Similarity=0.188 Sum_probs=168.1
Q ss_pred ceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
+....+.+|+.+.|.|.+....+.+.++|+|++..+.. ..++.....+ .|.|.++..+|+|.|+|.+.|..|..
T Consensus 8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~- 84 (312)
T 2y23_A 8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTED--SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA- 84 (312)
T ss_dssp CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTT--CTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC-
T ss_pred ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCC--CCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE-
Confidence 33456778999999998864333458999999999874 3445444433 79999999999999999999988754
Q ss_pred eeeEEEEEeeC------------CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecc
Q psy535 140 SSGQMEVLVRK------------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG 207 (460)
Q Consensus 140 ~~~~~~v~v~~------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 207 (460)
.+ ..+.+.. +|.+...+.....+..|+.+.|.|.+. .+.|.+.+.|++++.......++.+...
T Consensus 85 ~s--~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~--~~~p~~~v~W~~~~~~i~~~~~~~~~~~ 160 (312)
T 2y23_A 85 SS--YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAE--KLSGNAKVNYIFNEKEIFEGPKYKMHID 160 (312)
T ss_dssp EE--EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEES--CCCSSCEEEEEETTEEECSSSSCEEEEE
T ss_pred EE--EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEE--eCCCCCEEEEEECCEECeeCCcEEEEEc
Confidence 23 3444432 555554443233688999999999992 3889999999996655444444443321
Q ss_pred ------eEEEccccceeceEEEEEEecccceeeeeeEEEEec---------------CCCCCCCce----eeeeecceEE
Q psy535 208 ------NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG---------------TQPHAPYNI----TGVATEFSVT 262 (460)
Q Consensus 208 ------~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~---------------~~p~~p~~~----~~~~~~~~~~ 262 (460)
.|.|.++...|.|.|+|.+.|..+.......+.... ....+|... .....+..+.
T Consensus 161 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~ 240 (312)
T 2y23_A 161 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240 (312)
T ss_dssp TTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEE
T ss_pred cCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEE
Confidence 399999999999999999987655443333221000 000112111 1233456788
Q ss_pred EEeecCCCCCCCceeeEEEEEEecCCCCee-eeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCC
Q psy535 263 LEWLPGYSGGPDLKQNYVIWYREQGNKDWL-PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 331 (460)
Q Consensus 263 l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s 331 (460)
|.|.. .+.+++ .-+.|++++...... ..... .+...|.|.++...+.|.|.|.|.|..|....+
T Consensus 241 l~C~~--~~~p~~--~~v~W~~~g~~~~~~~~~~~~-~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~ 305 (312)
T 2y23_A 241 LKCKV--ANIKKE--THIVWYKDEREISVDEKHDFK-DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR 305 (312)
T ss_dssp EEEEE--ESCCSS--CEEEEEETTEEEEEECCC-----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEE
T ss_pred EEEEE--cCCCCC--CEEEEeeCCEECCCCCcEEEE-CCEEEEEECcCCHHHCEEEEEEEEcCCCceeee
Confidence 88884 334443 126777754321100 11111 234689999999999999999999999965443
No 79
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=198.03 Aligned_cols=212 Identities=14% Similarity=0.197 Sum_probs=139.5
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCCCc----ceeeeEEEEecCCee-EEcceeeeecceeeEEEEEEEecCCCCC-eEE
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIGEP----QAAQAYLNVEFPAKV-TFTPTVQYLPFRLQGVVQCHIKANPTFQ-YVT 90 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~ 90 (460)
+++|.|.+++.+|+|.|+|.|.|..+.. ....+.|.|..+|.. .+.+....+.+|+.+.|.|.+.+.|+++ .++
T Consensus 73 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~ 152 (327)
T 2wng_A 73 DFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLK 152 (327)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEE
T ss_pred eeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEE
Confidence 3489999999999999999999986542 124568888765542 2222235678899999999999887653 899
Q ss_pred EeeCCeecCccccccE------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc-ce--eeEEEEEeeCCCceeeCCCcc
Q psy535 91 WTKDKRLLEPYQTKDI------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ-GS--SGQMEVLVRKPPAFTIKPEAM 161 (460)
Q Consensus 91 W~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~-~~--~~~~~v~v~~~p~~~~~~~~~ 161 (460)
|+++|..+........ .....+.|.|.....+|+|.|+|.|.|..+.. .. +..+.+.+..+|.+...+..
T Consensus 153 W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~- 231 (327)
T 2wng_A 153 WFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP- 231 (327)
T ss_dssp EEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC-
T ss_pred EEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC-
Confidence 9999998864221000 00111247777777777899999999987653 22 33333345678877765543
Q ss_pred cccCCCCeEEEEeeeeccCCC-CCC-eeEEEcCCCccCCc--ccEEE-ec------ceEEEccccceeceEEEEEEeccc
Q psy535 162 YQRKVGESVDMHCEAQEAEGT-QKP-TITWQRRDGVALPK--NRVKI-VG------GNITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 162 ~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~~~~~--~~~~~-~~------~~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
+..|+.++|.|.+ .+. |.+ .+.|++++..+... ..... .+ ..|.|..+...|.|.|+|.|.|..
T Consensus 232 --~~~G~~v~l~C~~---~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 306 (327)
T 2wng_A 232 --VRAENQVNVTCQV---RKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDG 306 (327)
T ss_dssp --CSSTTCCEEEEEE---EEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETT
T ss_pred --cCCCCcEEEEEEE---ccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCC
Confidence 6789999999999 564 444 89999954332211 11111 11 247788888899999999999998
Q ss_pred ceee
Q psy535 231 ATIV 234 (460)
Q Consensus 231 g~~~ 234 (460)
|...
T Consensus 307 ~~~~ 310 (327)
T 2wng_A 307 QPAV 310 (327)
T ss_dssp CCCE
T ss_pred CCCc
Confidence 8643
No 80
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.93 E-value=2.9e-24 Score=185.15 Aligned_cols=201 Identities=18% Similarity=0.267 Sum_probs=149.8
Q ss_pred eEEEeeCC--------eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535 11 RVVIKKDG--------TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 11 r~~~~~~~--------~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
.+++..+| +|.|.+++.+|+|.|+|.+.+..+ +..+.|.|..++. ...+....+.+|+.+.|.|.+..
T Consensus 33 ~~~W~~~g~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v~~~~~-~~~~~~~~~~~g~~v~l~C~~~~ 108 (262)
T 3rjd_A 33 STQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGR---SDPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHAWK 108 (262)
T ss_dssp CEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEESSSCC---CCCEEEEEECSSE-EEEESCSEEETTSCEEEEEEEGG
T ss_pred eEEEEECCEEeeccCCeEEEecCCcccCeEEEEEEecCCc---cccEEEEEeccce-EecCCCeEEecCCeEEEEEEccC
Confidence 55555553 799999999999999999988654 4567888876654 34555667788999999999944
Q ss_pred CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC---CCceeeCCC
Q psy535 83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---PPAFTIKPE 159 (460)
Q Consensus 83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~---~p~~~~~~~ 159 (460)
..+.+.+.|++++..+.. ...++.|.|.++..+|+|.|+|.+.|..+.. +..+.|.|.. +|.+...+
T Consensus 109 ~~p~~~v~W~~~g~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~--~~~~~l~V~~~~~~p~~~~~~- 178 (262)
T 3rjd_A 109 DKLVYNVLYYRNGKAFKF-------FHWNSNLTILKTNISHNGTYHCSGMGKHRYT--SAGISVTVKELFPAPVLNASV- 178 (262)
T ss_dssp GCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGCEEEEEEEESSSEEE--EECEEEEEECSSCCCEEEESS-
T ss_pred CCCCceEEEEECCccccc-------cCCCCeEEEEECChhhCEEEEEEEeCCCCcc--ccceEEEeccCCCCCeEeecC-
Confidence 444458999999988742 1235679999999999999999999987554 4444555553 45555555
Q ss_pred cccccCCCCeEEEEeeeeccCCCCC-C----eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccccee
Q psy535 160 AMYQRKVGESVDMHCEAQEAEGTQK-P----TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 160 ~~~~~~~g~~~~l~C~~~~~~~~p~-~----~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.. .+..|+.+.|.|.+ .+.|. + .+.|++++. .+.. ......|.|.++...|.|.|+|.|.|..|..
T Consensus 179 ~~-~~~~g~~~~l~C~~---~~~p~~p~~~~~~~w~~~~~-~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 179 TS-PLLEGNLVTLSCET---KLLLQRPGLQLYFSFYMGSK-TLRG---RNTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp CS-SEETTCCEEEEEEC---CCCCC-----EEEEEEETTE-EEEE---EESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred ce-eecCCCeEEEEeEc---ccCCCCCCccEEEEEEeCCc-Eecc---cCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 22 57889999999999 67665 4 367888443 3321 1234579999999999999999999999964
No 81
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}
Probab=99.93 E-value=6.6e-25 Score=201.39 Aligned_cols=279 Identities=15% Similarity=0.200 Sum_probs=191.9
Q ss_pred EEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEE
Q psy535 143 QMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYY 222 (460)
Q Consensus 143 ~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 222 (460)
..++.++.+..+.+.|... .+..|++++|.|.+ . .+.+.|++++ ..+...++......|.|.++...|.|.|
T Consensus 195 ~~~~~~~~~t~i~v~P~~~-~v~~Gs~vtl~C~a---~---~~~I~W~~ng-~~i~~~ri~~~~~~L~I~nl~~sd~g~y 266 (488)
T 2q7n_A 195 LKNISWIRNTETNVFPQDK-VVLAGSNMTICCMS---P---TKVLSGQIGN-TLRPLIHLYGQTVAIHILNIPVSENSGT 266 (488)
T ss_dssp CEECCCCCCSSCCEECTTC-EEESSCCCEEEECC---S---SCEEEEEETT-EECCCEECSSSCEEEECCSCCCCCSSCE
T ss_pred hhhcCCcCCCceEECCCCC-EEcCCCCEEEEEEC---C---CCEEEEEECC-EECchhhccceEEEEEEeCCCcccCCcE
Confidence 3344444566666777776 57899999999998 3 4699999954 4554433222334689999999888888
Q ss_pred EEEEecccceeeeeeEEEEecCCCCCCCceeeee-ecceEEEEeecCCCCC--CCceeeEEEEEEecCCC-CeeeeeccC
Q psy535 223 ECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGG--PDLKQNYVIWYREQGNK-DWLPIPVTP 298 (460)
Q Consensus 223 ~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~-~~~~~~l~w~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~ 298 (460)
.|.+.+. +. .....+.+. .+|.+|.++.+.. ....++++|.++...+ +.+...|.+.++..+.. .+.......
T Consensus 267 ~~~C~~~-~~-i~~~~l~v~-~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~ 343 (488)
T 2q7n_A 267 NIIFITD-DD-VYGTVVFAG-YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLT 343 (488)
T ss_dssp EEEEEES-SC-EEEEEEEEE-CCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCCC
T ss_pred EEEEEcC-Ce-EEEEEEEee-CCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccccC
Confidence 8877632 22 234555554 5788888887644 6679999999877653 23447899988754322 222222111
Q ss_pred CCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEE
Q psy535 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYL 376 (460)
Q Consensus 299 ~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~ 376 (460)
.....+.+..+.....|.|+|.|.|..|.+ .+ .+.+.+.. .+|.||.++++...+ +++.|+|++|...++.+.+|+
T Consensus 344 ~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~-~S-~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~g~~l~Ye 421 (488)
T 2q7n_A 344 NETYRLGVQMHPGQEIHNFTLTGRNPLGQA-QS-AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQ 421 (488)
T ss_dssp SSCEEEEEECCSSCCCCEEEEEEEETTEEE-EE-EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECSSSEEEEE
T ss_pred CceEEEEEcCCCCccEEEEEEEEEeCCCCc-cc-eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCCCcceEEE
Confidence 234567776444468999999999999984 34 45554333 358999999998765 699999999976677899999
Q ss_pred EEEEEcCCeeeeccccCCCCcccccccceecCceeeee-eccCCCCcceE--EECCCCcCceEEEEEEEeecCCC---CC
Q psy535 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP-IPVTPPGSTQI--TINRLTPATTYEFQVVGKNELGD---GM 450 (460)
Q Consensus 377 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~i~~L~p~~~Y~~~v~a~n~~G~---s~ 450 (460)
|+|+..+. ..|.. +.........+ .|.+|.|++.|.|||+|.| .|. |+
T Consensus 422 V~Yr~~~~-------------------------~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~ 475 (488)
T 2q7n_A 422 IEICKANS-------------------------KKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSR 475 (488)
T ss_dssp EEEBCTTS-------------------------CCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCC
T ss_pred EEEEECCC-------------------------CCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCC
Confidence 99997543 01110 00001112344 8999999999999999999 887 68
Q ss_pred CCceeEeecC
Q psy535 451 LSNIVVVKTK 460 (460)
Q Consensus 451 ~s~~~~~~T~ 460 (460)
+|+++.++|.
T Consensus 476 WS~~v~~~T~ 485 (488)
T 2q7n_A 476 WSDEKRHLTT 485 (488)
T ss_dssp CCCCCCBCCC
T ss_pred CcCCEeEECC
Confidence 8888888874
No 82
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.92 E-value=1e-24 Score=190.98 Aligned_cols=262 Identities=13% Similarity=0.119 Sum_probs=176.2
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
+|.+...+....+.+|++++|.|.+.+ .++|++++....... .....+.|.|.++..+|+|.|+|.+.|..
T Consensus 4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~-----~v~W~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 74 (289)
T 3ejj_X 4 APVIEPSGPELVVEPGETVTLRCVSNG-----SVEWDGPISPYWTLD----PESPGSTLTTRNATFKNTGTYRCTELEDP 74 (289)
T ss_dssp CCEEESCSSEEEECTTCCEEEEEECSS-----CCEEECSCSSSSEEC----CCSSCCEEEESSCCGGGCEEEEEECCC--
T ss_pred CcEecCCCceEEECCCCCEEEEEEeCC-----cEEEccCCCceEEEe----ccCCccEEEEeeeccccCEEEEEEEeccC
Confidence 455556667788899999999999876 399998775432100 11234579999999999999999999877
Q ss_pred CCcceeeEEEEEeeCCCc-eeeCCCcccccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCC-cccEEEe-cceEEE
Q psy535 136 GTQGSSGQMEVLVRKPPA-FTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALP-KNRVKIV-GGNITI 211 (460)
Q Consensus 136 g~~~~~~~~~v~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~-~~~~~~~-~~~l~i 211 (460)
+.. +..+.|.|..+|. +...+... .+..|+.+.|.|.+ .+.+.+. +.|++.++..+. ..+.... ++.|.|
T Consensus 75 ~~~--~~~~~l~V~~~~~~~~~~~~~~-~v~~g~~v~L~C~~---~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i 148 (289)
T 3ejj_X 75 MAG--STTIHLYVKDPAHSWNLLAQEV-TVVEGQEAVLPCLI---TDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFII 148 (289)
T ss_dssp -----CEEEEEEECCSSCSEEESCSEE-EEETTSCEEECEEE---SCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEE
T ss_pred Ccc--eeEEEEEEeCCCcceecccceE-EEecCCceEeEEEc---cCCCcceEEEEEecCCeecCCCccEEECCCCCEEE
Confidence 764 4566677777766 44555443 68899999999999 5666554 999865555543 3344433 568999
Q ss_pred ccccceeceEEEEEEe-cccceeeeeeEEEEecCCCCCCCcee-----eeeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535 212 EGLRRVDFGYYECVVS-NEVATIVQAAQLVVEGTQPHAPYNIT-----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285 (460)
Q Consensus 212 ~~~~~~~~g~y~C~a~-n~~g~~~~~~~l~v~~~~p~~p~~~~-----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~ 285 (460)
.++...|.|.|+|.+. +..+.......|.|...++.+|.... ....+..+.|.|.... ..+.+ .+.|+++
T Consensus 149 ~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~-~~p~~---~i~W~~~ 224 (289)
T 3ejj_X 149 RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATN-AEVGF---NVILKRG 224 (289)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEE-SSSCC---EEEEEET
T ss_pred eecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCC-CCCce---EEEEEEC
Confidence 9999999999999999 55566667778888754444443322 1134668889887531 12333 3677776
Q ss_pred cCCCCeeeee----ccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535 286 QGNKDWLPIP----VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 286 ~~~~~~~~~~----~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
+......... ........|.|.++...+.|.|.|.|.|..|....+..+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~ 279 (289)
T 3ejj_X 225 DTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279 (289)
T ss_dssp TEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEEC
T ss_pred CEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEE
Confidence 5422111100 00012457999999999999999999999997655544443
No 83
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.92 E-value=3.5e-24 Score=189.86 Aligned_cols=216 Identities=15% Similarity=0.245 Sum_probs=142.6
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCC----CcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeE
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIG----EPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYV 89 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v 89 (460)
++.|.|.+++.+|+|.|+|.|.+..+ ...+..+.|.|.. +|.+...|... +.+|++++|.|.+.+. + +.+
T Consensus 73 ~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~~-~-~~~ 149 (316)
T 3vh8_G 73 QESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDIM-F-EHF 149 (316)
T ss_dssp SSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESSC-C-SEE
T ss_pred eEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCCC-C-cEE
Confidence 45899999999999999999986432 2235567788754 35565555544 7889999999999543 3 379
Q ss_pred EEeeCCeecCccccccEEE--eecCeEEEeecCCCCCeEEEEEEEcCCCCc---ceeeEEEEEee---CCCceeeCCCcc
Q psy535 90 TWTKDKRLLEPYQTKDIVV--MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ---GSSGQMEVLVR---KPPAFTIKPEAM 161 (460)
Q Consensus 90 ~W~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~---~~~~~~~v~v~---~~p~~~~~~~~~ 161 (460)
.|+|++..+.......... ...+.|.|.++..+|+|.|+|.|.|..|.. ..+..+.|.|. .+|.+...+..
T Consensus 150 ~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~- 228 (316)
T 3vh8_G 150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP- 228 (316)
T ss_dssp EEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS-
T ss_pred EEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC-
Confidence 9999998775321111111 134579999999999999999999987742 22445566664 34566655543
Q ss_pred cccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE-EE----ecceEEEccccceeceEEEEEEecccce----
Q psy535 162 YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV-KI----VGGNITIEGLRRVDFGYYECVVSNEVAT---- 232 (460)
Q Consensus 162 ~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~~~g~y~C~a~n~~g~---- 232 (460)
.+..|+.++|.|.+ . .+.+.+.|++++......... .. ....|.|.++. |+|.|+|.+.|..+.
T Consensus 229 -~v~~G~~v~L~C~~---~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s 301 (316)
T 3vh8_G 229 -KVQAGESVTLSCSS---R-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWS 301 (316)
T ss_dssp -CCCTTSCCEEEEEE---S-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEEC
T ss_pred -eecCCCcEEEEEEC---C-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhcc
Confidence 56889999999998 3 477899999955433221111 11 12468888888 999999999997653
Q ss_pred -eeeeeEEEEec
Q psy535 233 -IVQAAQLVVEG 243 (460)
Q Consensus 233 -~~~~~~l~v~~ 243 (460)
.+..+.|.|.+
T Consensus 302 ~~S~~~~l~V~g 313 (316)
T 3vh8_G 302 DPSDPLLVSVTG 313 (316)
T ss_dssp CCCCCEEC----
T ss_pred CCCCcEEEEEeC
Confidence 33444555543
No 84
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A
Probab=99.92 E-value=7.8e-24 Score=175.76 Aligned_cols=193 Identities=22% Similarity=0.313 Sum_probs=149.0
Q ss_pred CCCCCCCceee-eeecceEEEEeecCCCCC---CCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEE
Q psy535 244 TQPHAPYNITG-VATEFSVTLEWLPGYSGG---PDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319 (460)
Q Consensus 244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 319 (460)
.|+.+|.++.. .....++.|+|.++.... ...+.+|.+.|+..+...+..... ......+.|.+|.+++.|.|+|
T Consensus 3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V 81 (211)
T 3p4l_A 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA-NATTLSYLVTGLKPNTLYEFSV 81 (211)
T ss_dssp CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEEE-EESSSEEEECSCCTTCEEEEEE
T ss_pred CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEEe-CCCceEEEecCcCCCCEEEEEE
Confidence 46778888775 455779999999864321 233479999998765443322222 2256789999999999999999
Q ss_pred EEEcCCCCCCCCCcEEEEccCCCCC-CCcceEEEee---cceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCC
Q psy535 320 VGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVTEV---NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRP 395 (460)
Q Consensus 320 ~a~n~~G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~---~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~ 395 (460)
.|.|..|.+.+|..+.+.+....|. +|.++.+... .+++.|+|++|...++.+.+|.|+|+..+...
T Consensus 82 ~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~--------- 152 (211)
T 3p4l_A 82 MVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAE--------- 152 (211)
T ss_dssp EEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCSCCCEEEEEEESCTTSC---------
T ss_pred EEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCC---------
Confidence 9999999999999999999888786 9999999877 35999999999877889999999999754310
Q ss_pred CcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...|... ....+.+.+.|.+|.|++.|.|+|+|.|..|.|++|+++.++|+
T Consensus 153 -------------~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~ 203 (211)
T 3p4l_A 153 -------------IHDWVIE-PVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP 203 (211)
T ss_dssp -------------GGGSEEE-EEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC
T ss_pred -------------CCceEEE-EecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCc
Confidence 0011111 11246789999999999999999999999999999999999874
No 85
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.92 E-value=4.3e-24 Score=189.10 Aligned_cols=264 Identities=19% Similarity=0.153 Sum_probs=171.6
Q ss_pred EcceeeeecceeeEEEEEEEecCCCCC----eEEEeeCCeecCc-----------cccccEEEe--------ecCeEEEe
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKANPTFQ----YVTWTKDKRLLEP-----------YQTKDIVVM--------QNGSLLFT 117 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~----~v~W~~~~~~~~~-----------~~~~~~~~~--------~~~~l~i~ 117 (460)
..|....+..|++++|.|.+.+.+.+. .|+|+|++..... ....+.... .+.+|.|.
T Consensus 5 ~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~ 84 (313)
T 4fqp_A 5 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMF 84 (313)
T ss_dssp ECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEEC
T ss_pred cCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEEC
Confidence 456667778899999999998865542 4899998754211 011222221 23569999
Q ss_pred ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC
Q psy535 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL 197 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~ 197 (460)
+++.+|+|.|+|.+.+..+. ..+..+.|.+..+|.+...+... .+..++.+.+.|.+. .+.|.+.+.|++++....
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~-~~~~~~~l~v~~~P~~~~~~~~~-~~~~~~~~~~~C~~~--~~~P~~~i~W~~~~~~~~ 160 (313)
T 4fqp_A 85 GLRVEDEGNYTCLFVTFPQG-SRSVDIWLRVLAKPQNTAEVQKV-QLTGEPVPMARCVST--GGRPPAQITWHSDLGGMP 160 (313)
T ss_dssp SCCGGGCEEEEEEEECSSSC-EEEEEEEECCBBCCEEEEEECCB-CCCSSCEEEEEEEEE--EEBSCCEEEEEETTCCEE
T ss_pred cCChhhCEEEEEEEeeccCc-ceeeeeeeeeccCCcceecccce-EeecCceEEEEEEcc--CccCCcEEEeecCCcccc
Confidence 99999999999998654332 24566677777788776665554 567788899999874 678999999999655432
Q ss_pred CcccEEE-------ecceEEEccccceeceEEEEEEecccceeeeee--EEEEecCCCCC---CCceeeeeecceEEEEe
Q psy535 198 PKNRVKI-------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA--QLVVEGTQPHA---PYNITGVATEFSVTLEW 265 (460)
Q Consensus 198 ~~~~~~~-------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~--~l~v~~~~p~~---p~~~~~~~~~~~~~l~w 265 (460)
....... ....|.|......|.|.|+|.|.|..+...... .|.|.. +|.. +........+..++|.|
T Consensus 161 ~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-~P~v~~~~~~~~~~~~g~~v~l~C 239 (313)
T 4fqp_A 161 NTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-PPEVSISGYDNNWYLGQNEATLTC 239 (313)
T ss_dssp EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE-EEEEEEECCCSCEETTCCCEEEEE
T ss_pred ccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc-CCccccccccceeecCCCeEEEEE
Confidence 2211111 123588888889999999999999876544333 333322 1110 00111122345688888
Q ss_pred ecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535 266 LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 337 (460)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~ 337 (460)
.. .+.|.+. -+.|++++........ . ....|.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus 240 ~~--~g~P~p~--~v~W~~~~~~l~~~~~-~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 303 (313)
T 4fqp_A 240 DA--RSNPEPT--GYNWSTTMGPLPPFAV-A---QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVK 303 (313)
T ss_dssp EE--EEESCCC--EEEEEETTBSCCTTEE-E---ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred Ee--cCCCCCc--EEEEEECCEECCCceE-E---eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 74 3444441 2568877653211111 1 24579999999999999999999999976555555554
No 86
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.92 E-value=1.8e-23 Score=173.89 Aligned_cols=182 Identities=24% Similarity=0.385 Sum_probs=144.3
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ec--CeEEEeecCC-CCCeEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QN--GSLLFTRVNQ-NHQGRYTC 129 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~--~~l~i~~~~~-~d~G~y~C 129 (460)
.||.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.. ...++... .+ ..|.|.++.. +|+|.|+|
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C 82 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPP-SIVWRKNGKKVSG-TQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC 82 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEECCT-TSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCC-eEEEEECCEECCC-CcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence 47888889999999999999999999988776 8999999998863 22333332 23 3699999999 99999999
Q ss_pred EEEcCCCCcceeeEEEEEeeCC-------CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-ccc
Q psy535 130 TPYNAHGTQGSSGQMEVLVRKP-------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNR 201 (460)
Q Consensus 130 ~~~~~~g~~~~~~~~~v~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~ 201 (460)
.+.|..|.. .+..+.|.|..+ |.+...+... .+..|+.++|.|.+ .+.|.+.+.|++++..... ..+
T Consensus 83 ~~~n~~g~~-~~~~~~l~V~~~~~~~~~~p~~~~~~~~~-~~~~g~~v~l~C~~---~g~p~p~i~W~~~~~~~~~~~~~ 157 (212)
T 2yd1_A 83 VAENGVGDA-VSADATLTIYEGDKTPAGFPVITQGPGTR-VIEVGHTVLMTCKA---IGNPTPNIYWIKNQTKVDMSNPR 157 (212)
T ss_dssp EEECSSSCE-EEEEEEEEEECTTCSCTTCCEEEECCCCE-EEETTCCEEECCEE---ECSSCCEEEEEETTEECCTTSTT
T ss_pred EEEeCCCCe-EEeeEEEEEecccCCCCCCCeeEeCCCce-EeecCCeEEEEEEe---ccCCCCeEEEEECCeEcccCCCe
Confidence 999988772 344555555544 6666666554 67889999999999 7889999999995544332 345
Q ss_pred EEEecceEEEccccceeceEEEEEEecccceeeee-eEEEEec
Q psy535 202 VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEG 243 (460)
Q Consensus 202 ~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~~ 243 (460)
....++.|.|.++...|.|.|+|.|.|..|..... +.|.|..
T Consensus 158 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~ 200 (212)
T 2yd1_A 158 YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200 (212)
T ss_dssp EEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence 66677899999999999999999999999998764 6888875
No 87
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Probab=99.92 E-value=1.7e-23 Score=172.81 Aligned_cols=191 Identities=20% Similarity=0.295 Sum_probs=148.8
Q ss_pred CCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeec-cCCCCceEEEccCccCccEEEEEEE
Q psy535 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPV-TPPGSTQITINRLTPATTYEFQVVG 321 (460)
Q Consensus 244 ~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~a 321 (460)
.+|.+|.++.......++.|+|.++.+++.. +.+|.+.++.... ..|..... .......+.+ +|.+++.|.|++.|
T Consensus 4 ~~P~~P~~~~~~~~~~sv~l~W~~p~~~~~~-i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V~A 81 (205)
T 1cfb_A 4 DVPNAPKLTGITCQADKAEIHWEQQGDNRSP-ILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRVIA 81 (205)
T ss_dssp CCCCCCEEEEEEECSSEEEEEEECCCCTTSC-CCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEEEE
T ss_pred cCCCCCCCcEEEecCCEEEEEEECcccCCCc-eEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEEEE
Confidence 3677888777544788999999988655544 4799999987543 55643321 1224456777 99999999999999
Q ss_pred EcCCCCCCCC-CcEEEEccCCCC-CCCcceEEEeec-ceEEEEecCCC--CCCccceEEEEEEEEcCCeeeeccccCCCC
Q psy535 322 KNELGDGMLS-NIVVVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396 (460)
Q Consensus 322 ~n~~G~~~~s-~~~~~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~--~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~ 396 (460)
.|..|.+.++ ..+.+++....| .+|.++.+...+ +++.|+|++|. ..++.+.+|.|+|+..+.
T Consensus 82 ~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~------------ 149 (205)
T 1cfb_A 82 FNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIP------------ 149 (205)
T ss_dssp EETTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESST------------
T ss_pred EECCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCC------------
Confidence 9999999888 567777777666 589999998877 69999999997 568899999999997653
Q ss_pred cccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCC-CceeEeecC
Q psy535 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML-SNIVVVKTK 460 (460)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~-s~~~~~~T~ 460 (460)
...|..+.......+.+.|.+|.|++.|.|+|+|.|..|.|++ |..+.++|.
T Consensus 150 ------------~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~ 202 (205)
T 1cfb_A 150 ------------AAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG 202 (205)
T ss_dssp ------------TCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESS
T ss_pred ------------CCCcEEEEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecC
Confidence 1124433333446789999999999999999999999999995 788888873
No 88
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.92 E-value=5.4e-25 Score=194.52 Aligned_cols=261 Identities=15% Similarity=0.171 Sum_probs=164.8
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC---------------ccccccEEEe----ecCeEEEeecCCCCCe
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE---------------PYQTKDIVVM----QNGSLLFTRVNQNHQG 125 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~---------------~~~~~~~~~~----~~~~l~i~~~~~~d~G 125 (460)
...+.+|++++|.|.+.+.+++..|+|+|++.... .....++... .+++|.|.+++.+|+|
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 45677899999999987766655799998643211 1112233222 2357999999999999
Q ss_pred EEEEEEEcCCCCcceeeEEEEEeeCCCcee--eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE
Q psy535 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFT--IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK 203 (460)
Q Consensus 126 ~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~--~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~ 203 (460)
.|+|.|.|..+.. .+..+.+.+..+|... ..+... ....|+.+.|.|.+. .+.|.+.+.|++++.. +......
T Consensus 88 ~Y~C~a~n~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~l~C~~~--~g~P~~~i~W~~~~~~-~~~~~~~ 162 (308)
T 4fom_A 88 KYICKAVTFPLGN-AQSSTTVTVLVEPTVSLIKGPDSL-IDGGNETVAAICIAA--TGKPVAHIDWEGDLGE-MESTTTS 162 (308)
T ss_dssp EEEEEEEETTTEE-EEEEEEEEEEBCCEEEEEECSSCC-CTTCSCEEEEEEEEE--EEBSCCEEEECCCSSB-CCEEEEE
T ss_pred EEEEEEeeCCCcc-eeeeeEEEeeecccccccccccee-EEcCCceEEEEEEec--CCcCCceEEEEECCcc-cccccce
Confidence 9999998753322 3344445555454433 233333 456788999999864 6889999999995543 3222111
Q ss_pred ------EecceEEEccccceeceEEEEEEecccceeeee--eEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCC
Q psy535 204 ------IVGGNITIEGLRRVDFGYYECVVSNEVATIVQA--AQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGP 273 (460)
Q Consensus 204 ------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~--~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~ 273 (460)
...+.|.|..+...|.|.|+|.|.|..+..... +.|.|..+|. ..+........+..++|.|. ..+.+
T Consensus 163 ~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~--~~g~P 240 (308)
T 4fom_A 163 FPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCN--ADANP 240 (308)
T ss_dssp CTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECC--EEEES
T ss_pred eeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEE--EecCC
Confidence 123468899999999999999999987765443 3333332111 11111112223456777776 34444
Q ss_pred CceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535 274 DLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 337 (460)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~ 337 (460)
.+ ..+.|++++...... ....+...+.|.++...+.|.|+|.|.|.+|....+..+.+.
T Consensus 241 ~p--~~v~W~k~~~~~~~~---~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~ 299 (308)
T 4fom_A 241 PP--FKSVWSRLDGQWPDG---LLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYIS 299 (308)
T ss_dssp CE--EEEECCBSSSCCCSS---CBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred CC--cEEEEEECCeECCCc---EEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 43 225677765532211 122245667788999999999999999999976555555554
No 89
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.92 E-value=1.7e-23 Score=189.33 Aligned_cols=274 Identities=14% Similarity=0.144 Sum_probs=182.3
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCc------------cccccEEEe------ecCeEEEeecCCCCCeE
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP------------YQTKDIVVM------QNGSLLFTRVNQNHQGR 126 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~------------~~~~~~~~~------~~~~l~i~~~~~~d~G~ 126 (460)
...+.+|++++|.|.+.+.|.+ .+.|+|++..+.. ....++... ....|.|.+++.+|+|.
T Consensus 3 ~v~~~~G~~v~L~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~ 81 (363)
T 1wio_A 3 VVLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (363)
T ss_dssp EEEEETTSCEEECCCCTTCSSC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred eEEEeCCCeEEEEEEecCCCce-EEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence 3457789999999999876655 7999999854211 112333332 24579999999999999
Q ss_pred EEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec
Q psy535 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG 206 (460)
Q Consensus 127 y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 206 (460)
|+|.+.|..+ .+.|.|.. +...|.. .+..|+.++|.|.+ .+.|.+.+.|+++++. .....
T Consensus 82 Y~C~~~n~~~------~~~l~V~~---~~~~~~~--~v~~G~~v~l~C~~---~~~p~~~v~W~~~~~~------~~~~~ 141 (363)
T 1wio_A 82 YICEVEDQKE------EVQLLVFG---LTANSDT--HLLQGQSLTLTLES---PPGSSPSVQCRSPRGK------NIQGG 141 (363)
T ss_dssp EEEEETTEEE------EEEEEEEE---EEESSCS--SEESBSCEEEEEEC---CTTCCCCEEEECSSSC------EEEES
T ss_pred EEEEEEECCC------cEEEEEEe---CCCCCce--EEecCCCEEEEEEc---CCCCCCeEEEEcCCCc------ccccc
Confidence 9999987532 34444443 2333432 56789999999998 6789999999986543 23356
Q ss_pred ceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCC-CceeeEEEEEEe
Q psy535 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGP-DLKQNYVIWYRE 285 (460)
Q Consensus 207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~-~~~~~~~~~~~~ 285 (460)
..|.|.++...|+|.|+|.|.|..+.....+.+.|.. +|..+. ......+..+.|.|........ .| ..-+.|+++
T Consensus 142 ~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~-~p~~~~-~~~~~~G~~v~l~C~~~~~~~~~~P-~p~i~W~~~ 218 (363)
T 1wio_A 142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA-FQKASS-IVYKKEGEQVEFSFPLAFTVEKLTG-SGELWWQAE 218 (363)
T ss_dssp SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEEC-CSCSEE-EEEEETBCCEEEECCCCCCCCSSCE-EEEEEEEES
T ss_pred eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec-CCCCCC-ceEEecCCEEEEEEEEecccccCCC-ceeEEEecC
Confidence 7899999999999999999999877777777777764 333332 1223346678888864322111 12 234677776
Q ss_pred cCCCCee---------eeec-----------cCCCCceEEEccCccCccEEEEEEEEcC--CCCCCCCCcEEEEccCCCC
Q psy535 286 QGNKDWL---------PIPV-----------TPPGSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVVKTKGPKP 343 (460)
Q Consensus 286 ~~~~~~~---------~~~~-----------~~~~~~~~~i~~l~~~~~~~~~~~a~n~--~G~~~~s~~~~~~~~~~~P 343 (460)
+...... .... ...+...|.|.++...+.|.|.|.|.|. .|....+..+.+.. .+
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~---v~ 295 (363)
T 1wio_A 219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR---AT 295 (363)
T ss_dssp SCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE---EC
T ss_pred CCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE---ec
Confidence 5432110 0000 1122458999999999999999999999 88655555555542 24
Q ss_pred CCCcceEEEeecc---eEEEEecCC
Q psy535 344 GPPRNVSVTEVNN---GFVISWQPP 365 (460)
Q Consensus 344 ~~p~~~~~~~~~~---~v~l~W~~~ 365 (460)
+.+..+.+..... .+.+.|...
T Consensus 296 g~~~~l~C~~~g~p~p~~~i~W~~~ 320 (363)
T 1wio_A 296 QLQKNLTCEVWGPTSPKLMLSLKLE 320 (363)
T ss_dssp CCSSSEEEEEESSCCTTCCEEEECS
T ss_pred CCCeeEEEEEccccCCCccEEEEeC
Confidence 5556666554432 355777764
No 90
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.92 E-value=2.8e-24 Score=193.47 Aligned_cols=267 Identities=15% Similarity=0.163 Sum_probs=155.4
Q ss_pred ceeeeecceeeEEEEEEEecCCC----------CCeEEEeeCCeecC---cc---ccccEEEeecCeEEEeecCCCCCeE
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT----------FQYVTWTKDKRLLE---PY---QTKDIVVMQNGSLLFTRVNQNHQGR 126 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~----------~~~v~W~~~~~~~~---~~---~~~~~~~~~~~~l~i~~~~~~d~G~ 126 (460)
.....+.+|+++.|.|.+.+.|. .+.++|+|++.... +. .........++.|.|.++..+|+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence 34566889999999999987653 24899999884211 00 1122233457789999999999999
Q ss_pred EEEEEEcCCCCcceeeEEEEEeeCCCceeeC----CCcccccCCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCc-
Q psy535 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK----PEAMYQRKVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALPK- 199 (460)
Q Consensus 127 y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~----~~~~~~~~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~- 199 (460)
|+|.|.|..+....+ +.|.|..+|.+... +... .+..|+.+.|.|.+... .+.|.+.+.|++++ ..+..
T Consensus 94 Y~C~a~n~~~~~~~~--~~l~V~~~~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~-~~l~~~ 169 (349)
T 4dep_C 94 YTCMLRNTTYCSKVA--FPLEVVQKDSCFNSPMKLPVHK-LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC-YKIQNF 169 (349)
T ss_dssp EEEEEECSSCEEEEE--EEEEEECCCTTSCCSCCCCEEE-EETTCSEEEEECCSCTTSSCTTSCCEEEEEETT-EECCSC
T ss_pred EEEEEecCCceEEEE--EEEEEecCCcccCcccccCcce-eeecCccEEEEcCCCcccccCCCCceEEEeeCC-EECCCc
Confidence 999999987765444 44555544433221 2222 56789999999974211 56789999999954 44443
Q ss_pred ccEEEecceEEEccccceeceEEEEEEeccc-cee---eeeeEEEEecCCC--CCCCcee-------eeeecceEEEEee
Q psy535 200 NRVKIVGGNITIEGLRRVDFGYYECVVSNEV-ATI---VQAAQLVVEGTQP--HAPYNIT-------GVATEFSVTLEWL 266 (460)
Q Consensus 200 ~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~-g~~---~~~~~l~v~~~~p--~~p~~~~-------~~~~~~~~~l~w~ 266 (460)
.++...+..|.|.++...|+|.|+|.|.|.. |.. ...+.+.+...+. .+|.... ....+..++|.|.
T Consensus 170 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~ 249 (349)
T 4dep_C 170 NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCT 249 (349)
T ss_dssp SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEE
T ss_pred cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEE
Confidence 4555556789999999999999999999987 543 5566666654210 0221111 1223456777777
Q ss_pred cCCC--CCCCceeeEEEEEEecCCCCe--eeeec------cC-CC---CceEEEccCccCcc-EEEEEEEEcCCCCCCCC
Q psy535 267 PGYS--GGPDLKQNYVIWYREQGNKDW--LPIPV------TP-PG---STQITINRLTPATT-YEFQVVGKNELGDGMLS 331 (460)
Q Consensus 267 ~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~-~~---~~~~~i~~l~~~~~-~~~~~~a~n~~G~~~~s 331 (460)
.... +.+.+. +.|++++..... ..... .. .. ...|.|.++...+. |.|.|.|.|..|....+
T Consensus 250 ~~~~~~g~p~p~---v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~ 326 (349)
T 4dep_C 250 VYFSFLMDSRNE---VWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKA 326 (349)
T ss_dssp EEECCCTTCCCE---EEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEE
T ss_pred EEEccCCCCCCE---EEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEE
Confidence 4322 234333 677776543211 00000 00 11 23488999999999 99999999999977666
Q ss_pred CcEEE
Q psy535 332 NIVVV 336 (460)
Q Consensus 332 ~~~~~ 336 (460)
..+.+
T Consensus 327 ~~l~v 331 (349)
T 4dep_C 327 AKVKQ 331 (349)
T ss_dssp CC---
T ss_pred EEEee
Confidence 66655
No 91
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.92 E-value=8e-24 Score=172.73 Aligned_cols=183 Identities=19% Similarity=0.331 Sum_probs=143.7
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
+|.|...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+......++....++.|.|.++..+|+|.|+|.+.+..
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 80 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA 80 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCC-EEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCC-EEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence 4667777888889999999999999988765 799999998887656677777778899999999999999999999987
Q ss_pred CCcceeeEEEEEeeCCCceeeCCCc-ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cceEEEc
Q psy535 136 GTQGSSGQMEVLVRKPPAFTIKPEA-MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIE 212 (460)
Q Consensus 136 g~~~~~~~~~v~v~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~l~i~ 212 (460)
+.......+.+.+..+|.+...+.. ...+..|+.+.|.|.+ .+.|.+.+.|++++.......+.... +..|.|.
T Consensus 81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~---~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~ 157 (189)
T 2v5t_A 81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA---SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 157 (189)
T ss_dssp TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE---EEESCCEEEEEETTEECCCSSSEEEETTTTEEEEC
T ss_pred CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEE---ccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEc
Confidence 6655556677777778777655442 2357789999999999 67799999999955444334444433 4579999
Q ss_pred cccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 213 GLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 213 ~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
++...|.|.|+|.|.|..|.......|.|.
T Consensus 158 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 158 NIINSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 999999999999999999998888877765
No 92
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.92 E-value=7.8e-24 Score=185.25 Aligned_cols=217 Identities=15% Similarity=0.215 Sum_probs=145.3
Q ss_pred ceEEEeeC----CeEEEeecCCCCCeeEEEEEEeCCCCcce--eeeEEEEecCCee--EEcce--eeeecceeeEEEEEE
Q psy535 10 TRVVIKKD----GTLVINPVGSDDSGLYMCEVSNGIGEPQA--AQAYLNVEFPAKV--TFTPT--VQYLPFRLQGVVQCH 79 (460)
Q Consensus 10 ~r~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~~l~v~~~p~~--~~~~~--~~~~~~g~~~~l~C~ 79 (460)
.++....+ ++|.|.+++.+|+|.|+|.|.|..|.... ..+.|.|..+... ...+. ...+.+|+++.|.|.
T Consensus 39 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~ 118 (289)
T 3mjg_X 39 QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR 118 (289)
T ss_dssp EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCC
T ss_pred cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeE
Confidence 45555444 38999999999999999999998876323 3444444433222 11122 256888999999999
Q ss_pred EecCCCCCeEEEeeCC--eecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC--CCcee
Q psy535 80 IKANPTFQYVTWTKDK--RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK--PPAFT 155 (460)
Q Consensus 80 ~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~--~p~~~ 155 (460)
+. .|.+ .++|++++ ..+... . .....+. ...|+|.|+|.|.|..+.. .+..+.|.+.. +|.+.
T Consensus 119 ~~-~p~~-~v~w~~~~~~~~~~~~-----~-~~~~~~~----~~~d~G~Y~C~a~n~~~~~-~s~~~~l~v~~~~~p~i~ 185 (289)
T 3mjg_X 119 VT-DPQL-VVTLHEKKGDVALPVP-----Y-DHQRGFS----GIFEDRSYICKTTIGDREV-DSDAYYVYRLQVSSINVS 185 (289)
T ss_dssp BS-CTTS-CEEEEESSCCSCCCCC-----E-ETTTEEE----ECCCSSEEEEEEEETTEEE-ECCCEEEEECCCCCCCCE
T ss_pred cC-CCCc-eEEEEeCCCCCcccee-----e-cCCcCee----eeccCcEEEEEEEeCCcee-eeeeEEEEecCCCCCCcE
Confidence 98 4554 68888865 332210 0 0111121 3579999999999776554 23334555554 77777
Q ss_pred eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc--cEE-------EecceEEEccccceeceEEEEEE
Q psy535 156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVK-------IVGGNITIEGLRRVDFGYYECVV 226 (460)
Q Consensus 156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--~~~-------~~~~~l~i~~~~~~~~g~y~C~a 226 (460)
..+... .+..|+.+.|.|.+ .+.|.+.+.|++++...-... ... .....|.|.++...|.|.|+|.|
T Consensus 186 ~~~~~~-~v~~G~~v~L~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 261 (289)
T 3mjg_X 186 VNAVQT-VVRQGENITLMCIV---IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNV 261 (289)
T ss_dssp EEESCS-EEETTSCEEEEEEE---ESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEE
T ss_pred EeCCcc-eeEcCCCEEEEEEE---CCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEe
Confidence 766654 68899999999999 689999999997443221111 111 12357999999999999999999
Q ss_pred ecccceeeeeeEEEEec
Q psy535 227 SNEVATIVQAAQLVVEG 243 (460)
Q Consensus 227 ~n~~g~~~~~~~l~v~~ 243 (460)
.|..|....+..|.+..
T Consensus 262 ~N~~G~~~~~~~l~v~~ 278 (289)
T 3mjg_X 262 TESVNDHQDEKAINITV 278 (289)
T ss_dssp EETTTTEEEEEEEEEEE
T ss_pred ecCCCCceeEEEEEEEE
Confidence 99999999999888875
No 93
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.92 E-value=5.3e-24 Score=174.25 Aligned_cols=183 Identities=22% Similarity=0.393 Sum_probs=143.0
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-CeEEEeecCCCCCeEEEEEEE
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~y~C~~~ 132 (460)
..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+... ..++....+ ..|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQP-EISWTRNKILIKLF-DTRYSIRENGQLLTILSVEDSDDGIYCCTAN 82 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCEEEESCC-EEEEEETTEECCTT-CTTEEEEGGGTEEEESSCCGGGCEEEEEEEE
T ss_pred CCCceeecCccceeeeCCCcEEEEeeCCCCCCC-eEEEEECCEEcccc-CccEEEcCCccEEEEcCCCcccCeEEEEEEE
Confidence 345667777777888999999999999988766 89999999988643 344444433 469999999999999999999
Q ss_pred cCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEE
Q psy535 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITI 211 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i 211 (460)
|..|.. ......|.|..+|.+...+... .+..|+.+.|.|.+ .+.|.+.+.|++++.......+... .++.|.|
T Consensus 83 ~~~~~~-~~~~~~l~v~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i 157 (192)
T 2iep_A 83 NGVGGA-VESCGALQVKMKPKITRPPINV-KIIEGLKAVLPCTT---MGNPKPSVSWIKGDSALRENSRIAVLESGSLRI 157 (192)
T ss_dssp CSSSCC-EEEEEEEEEEEEEEEEECCCCE-EEETTSCEEECCEE---EEESCCEEEEEETTEECCCCSSEEECTTSCEEE
T ss_pred cCCCce-eEeEEEEEEEeCCccccCCcce-EEeCCCcEEEEEEE---eccCCceEEEEeCCEEccCCCcEEEecCCcEEE
Confidence 987764 3345566666788877776654 67899999999998 6888999999996554444444443 3568999
Q ss_pred ccccceeceEEEEEEeccccee-eeeeEEEEec
Q psy535 212 EGLRRVDFGYYECVVSNEVATI-VQAAQLVVEG 243 (460)
Q Consensus 212 ~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~~ 243 (460)
.++...|.|.|+|.|.|..|.. +..+.|.|..
T Consensus 158 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 190 (192)
T 2iep_A 158 HNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190 (192)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence 9999999999999999999987 4456777764
No 94
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.91 E-value=7.7e-25 Score=192.04 Aligned_cols=264 Identities=11% Similarity=0.060 Sum_probs=172.1
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+|.+...+....+.+|++++|.|.+.+. +.|++++........ ....+.|.|.+++.+|+|.|+|.+.|.
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 73 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS-----VEWDGPPSPHWTLYS----DGSSSILSTNNATFQNTGTYRCTEPGD 73 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC-----CCBCCCCCSSCEECC----BTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc-----eEEccCCCCceEEec----cCceEEEEEcccccccCEEEEEEEccC
Confidence 46778777888889999999999998773 899976543211000 001237999999999999999999987
Q ss_pred CCCcceeeEEEEEeeCCCce-eeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCc-ccEEEe-cceE
Q psy535 135 HGTQGSSGQMEVLVRKPPAF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPK-NRVKIV-GGNI 209 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~-~~~~~~-~~~l 209 (460)
.+.. +..+.|.|..+|.. ...+... .+..|+.+.|.|.+ .+ |. +.+.|+++++..+.. .+.... ...|
T Consensus 74 ~~~~--~~~~~l~V~~~~~~~~~~~~~~-~v~~g~~v~l~C~~---~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L 146 (292)
T 4dkd_C 74 PLGG--SAAIHLYVKDPARPWNVLAQEV-VVFEDQDALLPCLL---TD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGF 146 (292)
T ss_dssp ---C--CEEECCEECCSSCCEEESCSEE-EEETTSCEECCEEE---SS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCC
T ss_pred CCCc--ceEEEEEEcCccccccccCCeE-EEcCCCcEEEeeeC---CC-CCcceeEEEEecCCCccccCCcccccCCceE
Confidence 7765 45566667777663 4444443 67899999999998 45 44 789999865555433 233332 4469
Q ss_pred EEccccceeceEEEEEEecccceee-eeeEEEEecCCCCCCCceee-----eeecceEEEEeecCCCCCCCceeeEEEEE
Q psy535 210 TIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEGTQPHAPYNITG-----VATEFSVTLEWLPGYSGGPDLKQNYVIWY 283 (460)
Q Consensus 210 ~i~~~~~~~~g~y~C~a~n~~g~~~-~~~~l~v~~~~p~~p~~~~~-----~~~~~~~~l~w~~~~~~~~~~~~~~~~~~ 283 (460)
.|.++...|.|.|+|.+.|..+... ....|.|....+.+|..... ...+..+.|.|... +.+++ ..+.|+
T Consensus 147 ~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~--~~~~~--~~~~w~ 222 (292)
T 4dkd_C 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSAS--SVDVN--FDVFLQ 222 (292)
T ss_dssp EETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEE--ESSSC--CEEECC
T ss_pred EECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEec--CCCCc--eEEEEe
Confidence 9999999999999999998877553 36777777544434433221 13466788988853 22322 113344
Q ss_pred EecCCCCee-eeeccC---CCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEc
Q psy535 284 REQGNKDWL-PIPVTP---PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338 (460)
Q Consensus 284 ~~~~~~~~~-~~~~~~---~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~ 338 (460)
+++...... ...... .....|.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 281 (292)
T 4dkd_C 223 HNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281 (292)
T ss_dssp BSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred CCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence 443321110 011111 0224799999999999999999999999765555555443
No 95
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.91 E-value=1.6e-23 Score=171.77 Aligned_cols=182 Identities=20% Similarity=0.341 Sum_probs=139.9
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecC--eEEEeecCCCCCeEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNG--SLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~--~l~i~~~~~~d~G~y~C~~ 131 (460)
.+|.+...|....+.+|++++|.|.+.+.|.+ .+.|++++..+......+... ..++ .|.|.+++.+|+|.|+|.+
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 82 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA 82 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCC-EEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence 35677778888889999999999999988765 799999999886543222222 2333 7999999999999999999
Q ss_pred EcCCCCcceeeEEEEEee-CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cc-
Q psy535 132 YNAHGTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GG- 207 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v~v~-~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~- 207 (460)
.|..|.......+.|... .+|.+...+... .+..|+.+.|.|.+ .+.|.+.+.|++++.......+.... +.
T Consensus 83 ~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T 2a38_A 83 TNGSGQATSTAELLVKAETAPPNFVQRLQSM-TVRQGSQVRLQVRV---TGIPTPVVKFYRDGAEIQSSLDFQISQEGDL 158 (194)
T ss_dssp EETTEEEEEEEEEEEECCCEEEEEEECCCCE-EECTTEEEEEEEEE---EEESCCEEEEEETTEECCCSSSEEEEEETTE
T ss_pred EcCCceEeEEEEEEEccCCCCCEEEeCCccE-EEcCCCEEEEEEEE---EEecCCeEEEEECCEECCCCCcEEEEEcCCE
Confidence 998877655544444322 466666666554 68899999999999 68899999999965544444444433 22
Q ss_pred -eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 208 -NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 208 -~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
.|.|.++...|.|.|+|.|.|..|.......|.|
T Consensus 159 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp EEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 6999999999999999999999999888887766
No 96
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.91 E-value=2.7e-23 Score=170.83 Aligned_cols=181 Identities=17% Similarity=0.314 Sum_probs=138.6
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ecC--eEEEeecCCCCCeEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNG--SLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~d~G~y~C~ 130 (460)
.+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... .++... .++ .|.|.++..+|+|.|+|.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEECCCCS-SSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCC-EEEEEECCEECccCC-CcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence 46788888888899999999999999988765 799999999886432 233322 233 799999999999999999
Q ss_pred EEcCCCCcceeeEEEEEeeCCCceeeCCC----cccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-
Q psy535 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPE----AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV- 205 (460)
Q Consensus 131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~~~----~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~- 205 (460)
+.|..|.. +..+.|.|..+|.+...+. ....+..|+.+.|.|.+ .+.|.+.+.|++++..+....++...
T Consensus 81 ~~n~~g~~--~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~i~W~~~~~~~~~~~~~~~~~ 155 (197)
T 2j8h_A 81 ATNQGGSV--SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF---SGKPDPVITWQKGQDLIDNNGHYQVIV 155 (197)
T ss_dssp EEETTEEE--EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE---EEESCCEEEEEESSCEECSSSSCEEEE
T ss_pred EEECCCce--eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE---EecCCCcEEEEECCEEeecCCCEEEEE
Confidence 99987775 4445555555554433221 12256789999999999 68899999999966544444444432
Q ss_pred ---cceEEEcc-ccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 206 ---GGNITIEG-LRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 206 ---~~~l~i~~-~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
...|.|.+ +...|.|.|+|.|.|..|.....+.|.|.
T Consensus 156 ~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp CSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 34789999 99999999999999999998888888764
No 97
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.91 E-value=4.3e-23 Score=169.25 Aligned_cols=177 Identities=19% Similarity=0.311 Sum_probs=139.7
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCccccccEEE--ee--------cCeEEEeecCCCCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKDIVV--MQ--------NGSLLFTRVNQNHQ 124 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~--~~--------~~~l~i~~~~~~d~ 124 (460)
+|.|...|....+.+|+++.|.|.+. +.|.+ .+.|++++..+......+... .. .+.|.|.++..+|+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPP-EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCC-CCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCc-EEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 67788889999999999999999999 87765 799999999987532222222 22 35799999999999
Q ss_pred eEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEE
Q psy535 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVK 203 (460)
Q Consensus 125 G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~ 203 (460)
|.|+|.+.+..+.. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+ .+.|.| .+.|++++.........
T Consensus 81 G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~p~~v~W~~~~~~~~~~~~~- 154 (195)
T 2c5d_C 81 GQYQCLVFLGHQTF-VSQPGYVGLEGLPYFLEEPEDR-TVAANTPFNLSCQA---QGPPEPVDLLWLQDAVPLATAPGH- 154 (195)
T ss_dssp EEEEEEEEETTEEE-ECCCEEEEECCSCEEEECCCCE-EECTTCCEEEEEEE---ECSSCCCEEEEEESSCBSSSSTTS-
T ss_pred cEEEEEEEeCCCce-ecccEEEEEecCCeEEcCCCcE-EEcCCCEEEEEeEC---CCCCCCCEEEEEECCEeccCCCCc-
Confidence 99999999977653 3445777888899888877765 67889999999999 788999 99999965543332221
Q ss_pred EecceEEEccccceeceEEEEEEecccceee-eeeEEEE
Q psy535 204 IVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVV 241 (460)
Q Consensus 204 ~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~-~~~~l~v 241 (460)
.....|.|.++. |+|.|+|.|.|..|... ..+.|.|
T Consensus 155 ~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 345678999887 78999999999999885 6777777
No 98
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.91 E-value=3.4e-24 Score=190.04 Aligned_cols=265 Identities=16% Similarity=0.188 Sum_probs=174.7
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC--ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE--PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG 142 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~ 142 (460)
...+.+|+++.|.|.+.+.++.+.++|+|++..+. .....++.. .++.|.|.+++.+|+|.|+|.|.|..|......
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 92 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKI 92 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE-CSSBEECTTCCGGGCSCCEECCCSSSCCCCEEC
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec-cCCeEEECCCChhhCEEEEEEEeCCceEEEEEE
Confidence 45678899999999999987455899999986532 122334333 356899999999999999999999887665444
Q ss_pred EEEEEeeCCCceeeCCCc--ccccCCCCeEEEEeeeec---cCCCCCCeeEEEcCCCccCC-cccEEEecceEEEccccc
Q psy535 143 QMEVLVRKPPAFTIKPEA--MYQRKVGESVDMHCEAQE---AEGTQKPTITWQRRDGVALP-KNRVKIVGGNITIEGLRR 216 (460)
Q Consensus 143 ~~~v~v~~~p~~~~~~~~--~~~~~~g~~~~l~C~~~~---~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~ 216 (460)
.+.+. ..+|.+...+.. ...+..|+.+.|.|.+.. ..+.|.+.+.|++++..... ..+....++.|.|.++..
T Consensus 93 ~v~v~-~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~ 171 (315)
T 1itb_B 93 SAKFV-ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAE 171 (315)
T ss_dssp CCEEE-CCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCG
T ss_pred EEEEe-CCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEecee
Confidence 44332 244544333221 125678999999998610 15788899999995543322 344555677999999999
Q ss_pred eeceEEEEEEe-ccccee---eeeeEEEEecC-CCCCCCce------eeeeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535 217 VDFGYYECVVS-NEVATI---VQAAQLVVEGT-QPHAPYNI------TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285 (460)
Q Consensus 217 ~~~g~y~C~a~-n~~g~~---~~~~~l~v~~~-~p~~p~~~------~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~ 285 (460)
.|.|.|+|.|. |..|.. ...+.+.+... .+.+|... .....+..+.|.|.. .+.+.+. +.|+++
T Consensus 172 ~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~--~g~P~p~---i~W~~~ 246 (315)
T 1itb_B 172 KHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV--TGQLSDI---AYWKWN 246 (315)
T ss_dssp GGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE--EECTTSE---EEEEET
T ss_pred hhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE--ecCCCCe---eEEEEC
Confidence 99999999999 787876 33344433321 12233221 123345678898884 3444443 677775
Q ss_pred cCCCCe-------eeeeccC-------CCCceEEEccCccCc-cEEEEEEEEcCCCCCCCCCcEEE
Q psy535 286 QGNKDW-------LPIPVTP-------PGSTQITINRLTPAT-TYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 286 ~~~~~~-------~~~~~~~-------~~~~~~~i~~l~~~~-~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
+..... ....... .....|.|.++...+ .|.|+|.|.|..|....+..+.+
T Consensus 247 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v 312 (315)
T 1itb_B 247 GSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312 (315)
T ss_dssp TEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred CEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEe
Confidence 432110 1111110 012379999999999 99999999999997655444443
No 99
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.91 E-value=6.2e-23 Score=179.52 Aligned_cols=254 Identities=13% Similarity=0.120 Sum_probs=159.6
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee----cCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ----NGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
......+.+|++++|.|.+.+. ++|++++..+. .+..... .+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~ 76 (289)
T 3mjg_X 6 PGPELVLNVSSTFVLTCSGSAP-----VVWERMSQEPP----QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL 76 (289)
T ss_dssp SCSEEECCTTCCEEEEEEESSC-----CEEEBTTBCCS----EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred CCCeEEEeCCCcEEEEEeccce-----EEEECCCCCcc----cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence 4445678899999999998773 89999998873 1222222 247999999999999999999998765
Q ss_pred -cceeeEEEEEeeCCCceeeCCCcc---cccCCCCeEEEEeeeeccCCCCCCeeEEEcCC-CccCCcccEEEecceEEEc
Q psy535 138 -QGSSGQMEVLVRKPPAFTIKPEAM---YQRKVGESVDMHCEAQEAEGTQKPTITWQRRD-GVALPKNRVKIVGGNITIE 212 (460)
Q Consensus 138 -~~~~~~~~v~v~~~p~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~l~i~ 212 (460)
...+..+.|.+..|.......... ..+..|+.+.|.|.+ . .|.+.+.|++.+ +..+. ..... ...+.
T Consensus 77 ~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~---~-~p~~~v~w~~~~~~~~~~-~~~~~-~~~~~-- 148 (289)
T 3mjg_X 77 ETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV---T-DPQLVVTLHEKKGDVALP-VPYDH-QRGFS-- 148 (289)
T ss_dssp --CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCB---S-CTTSCEEEEESSCCSCCC-CCEET-TTEEE--
T ss_pred CcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEc---C-CCCceEEEEeCCCCCccc-eeecC-CcCee--
Confidence 334556667666443322222111 257889999999998 4 567788888754 32222 11111 11111
Q ss_pred cccceeceEEEEEEecccceeee-eeEEEEecCCCCCCCcee-----eeeecceEEEEeecCCCCCCCceeeEEEEEEec
Q psy535 213 GLRRVDFGYYECVVSNEVATIVQ-AAQLVVEGTQPHAPYNIT-----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ 286 (460)
Q Consensus 213 ~~~~~~~g~y~C~a~n~~g~~~~-~~~l~v~~~~p~~p~~~~-----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~ 286 (460)
...|.|.|+|.|.|..+.... ...+.+... .+|.... ....+..+.|.|... +.+.+. +.|++++
T Consensus 149 --~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~--~~p~i~~~~~~~~v~~G~~v~L~C~~~--g~p~p~---v~W~~~~ 219 (289)
T 3mjg_X 149 --GIFEDRSYICKTTIGDREVDSDAYYVYRLQV--SSINVSVNAVQTVVRQGENITLMCIVI--GNEVVN---FEWTYPR 219 (289)
T ss_dssp --ECCCSSEEEEEEEETTEEEECCCEEEEECCC--CCCCCEEEESCSEEETTSCEEEEEEEE--SCSSBE---EEEECTT
T ss_pred --eeccCcEEEEEEEeCCceeeeeeEEEEecCC--CCCCcEEeCCcceeEcCCCEEEEEEEC--CCCCcc---eEEEcCC
Confidence 356899999999987665433 344555432 2222111 233466889999853 344442 6777544
Q ss_pred CCCCe---eeeecc----CCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCC
Q psy535 287 GNKDW---LPIPVT----PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP 341 (460)
Q Consensus 287 ~~~~~---~~~~~~----~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~ 341 (460)
..... ...... ......|.|.++...+.|.|.|.|.|..|....+..+.+...+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~ 281 (289)
T 3mjg_X 220 KESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES 281 (289)
T ss_dssp SSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred ccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence 32111 111111 11336899999999999999999999999887777787765543
No 100
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=99.91 E-value=6.1e-24 Score=196.22 Aligned_cols=216 Identities=22% Similarity=0.289 Sum_probs=156.8
Q ss_pred cceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCC--CCee
Q psy535 215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN--KDWL 292 (460)
Q Consensus 215 ~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 292 (460)
...+.|.|.|.+.|.++.............+|.+|.++.......++.|+|.++...+..++..|.+.++..+. ..|.
T Consensus 303 ~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl~~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~~~~ 382 (536)
T 3fl7_A 303 LPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECG 382 (536)
T ss_dssp ECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCEEEECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CCCEE
T ss_pred CCCCCCccEEEEeccccccCCCccccccccCCCcccceEEEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCCccc
Confidence 34567899999999988765443332333478888888777778899999999887776556899999886321 1111
Q ss_pred e------e--eccCCCCceEEEccCccCccEEEEEEEEcCCCC---CCCCCcEEEEccCCCCCCCcceEEEeec-ceEEE
Q psy535 293 P------I--PVTPPGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVI 360 (460)
Q Consensus 293 ~------~--~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~---~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l 360 (460)
. . .........+.|.+|.+++.|.|+|.|.|..|. +..+..+.+.+. |.+|..+.....+ +++.|
T Consensus 383 ~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~---~~~Ps~~~~~~~s~tSV~L 459 (536)
T 3fl7_A 383 PCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSIN---QTEPPKVRLEGRSTTSLSV 459 (536)
T ss_dssp ECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECC---SCCCCEEEEEECCC-CCEE
T ss_pred ccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeec---ccCCCCCceeeccCCeEEE
Confidence 0 0 111224678999999999999999999999987 334556666654 4455566655544 59999
Q ss_pred EecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEE
Q psy535 361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440 (460)
Q Consensus 361 ~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v 440 (460)
+|++|...+++|.+|+|+|+..+.. ..+..+ ....++++|.+|.|++.|.|+|
T Consensus 460 sW~pP~~~ng~I~~Y~V~y~~~~~~------------------------~~~~~v---~~~~ts~~l~gL~P~T~Y~frV 512 (536)
T 3fl7_A 460 SWSIPPPQQSRVWKYEVTYRKKGDS------------------------NSYNVR---RTEGFSVTLDDLAPDTTYLVQV 512 (536)
T ss_dssp EEECCTTTTTTCSEEEEEEEEC--C------------------------CCCEEE---EESSSEEECCSCCSSCEEEEEE
T ss_pred EEECCcCCCCcccEEEEEEEECCCC------------------------ceEEEE---cCCCCEEEECCCCCCCEEEEEE
Confidence 9999987789999999999976531 011111 2356889999999999999999
Q ss_pred EEeecCCCCCCCceeEeecC
Q psy535 441 VGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 441 ~a~n~~G~s~~s~~~~~~T~ 460 (460)
+|.|..|.|++|+++.++|.
T Consensus 513 rA~n~~G~Gp~S~~v~~~T~ 532 (536)
T 3fl7_A 513 QALTQEGQGAGSKVHEFQTL 532 (536)
T ss_dssp EEECC---CEECCCEEEECC
T ss_pred EEEcCCcccCCCCCEEEEeC
Confidence 99999999999999999984
No 101
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.91 E-value=3.1e-23 Score=184.75 Aligned_cols=261 Identities=12% Similarity=0.151 Sum_probs=152.8
Q ss_pred eeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCc-------cccccEEE--------eecCeEEEeecCC
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEP-------YQTKDIVV--------MQNGSLLFTRVNQ 121 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~-------~~~~~~~~--------~~~~~l~i~~~~~ 121 (460)
.+...|....+.+|+++.|.|.+.+. |.+ .|+|+|++.+... ....++.. .....|.|.+++.
T Consensus 5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~-~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~ 83 (327)
T 2wng_A 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVG-PIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP 83 (327)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCC-CEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred EEEcCCCceEEecCCcEEEEEEccCcCCCc-eEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence 45566778889999999999999887 544 7999998764320 01123332 2344799999999
Q ss_pred CCCeEEEEEEEcCCCCcc---eeeEEEEEeeCCCce--eeCCCcccccCCCCeEEEEeeeeccCCCCCC--eeEEEcCCC
Q psy535 122 NHQGRYTCTPYNAHGTQG---SSGQMEVLVRKPPAF--TIKPEAMYQRKVGESVDMHCEAQEAEGTQKP--TITWQRRDG 194 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~~~---~~~~~~v~v~~~p~~--~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~--~~~W~~~~~ 194 (460)
+|+|.|+|.+.|..+... .+..+.|.|..+|.. ...+. ..+..|+.+.|.|.+ .+.|++ .+.|++++
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~--~~~~~g~~~~l~C~~---~g~p~~~~~v~W~k~g- 157 (327)
T 2wng_A 84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPA--ARATPQHTVSFTCES---HGFSPRDITLKWFKNG- 157 (327)
T ss_dssp GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCS--SCBCTTCEEEEEEEE---EEEBSSCCEEEEEETT-
T ss_pred ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccc--cccCCCCEEEEEEEE---eCccCCCcEEEEEECC-
Confidence 999999999999765421 122345555544432 22332 257889999999999 566655 89999954
Q ss_pred ccCCcccEEE----------ecceEEEccccceeceEEEEEEeccccee-eeeeEEEEecCCCCCCCcee---eeeecce
Q psy535 195 VALPKNRVKI----------VGGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVVEGTQPHAPYNIT---GVATEFS 260 (460)
Q Consensus 195 ~~~~~~~~~~----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~~~~p~~p~~~~---~~~~~~~ 260 (460)
..+....... ....|.|......+.|.|+|.|.|..+.. .......+......+|.... ....+..
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~ 237 (327)
T 2wng_A 158 NELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQ 237 (327)
T ss_dssp EECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTC
T ss_pred EEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCCc
Confidence 4443222111 12246666666677899999999987753 11112222111122232211 1224567
Q ss_pred EEEEeecCCCCCCCceeeEEEEEEecCCCCee---eeeccCCCC----ceEEEccCccCccEEEEEEEEcCCCCC
Q psy535 261 VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL---PIPVTPPGS----TQITINRLTPATTYEFQVVGKNELGDG 328 (460)
Q Consensus 261 ~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~i~~l~~~~~~~~~~~a~n~~G~~ 328 (460)
++|.|... +.+++ ...+.|++++...... .......+. ..|.|..+...+.|.|.|.|.|..|..
T Consensus 238 v~l~C~~~--g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 238 VNVTCQVR--KFYPQ-RLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp CEEEEEEE--EEBSS-CEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred EEEEEEEc--cccCC-CcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence 88888743 22222 1136777765421110 011111111 347788888899999999999998753
No 102
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.91 E-value=1.2e-22 Score=165.69 Aligned_cols=176 Identities=20% Similarity=0.372 Sum_probs=135.8
Q ss_pred cCCeeEEcceeeeecc-eeeEEEEEEEecCCC-CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPF-RLQGVVQCHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~-g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
.||.+...+. ..+.+ |+++.|.|.+.+.+. .+.+.|++++..+...... ..++.|.|.++..+|+|.|+|.+.
T Consensus 2 ~~P~i~~~~~-~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~ 76 (190)
T 2wv3_A 2 NEPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN----ASNMEYRINKPRAEDSGEYHCVYH 76 (190)
T ss_dssp -CCEEEECCC-EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC----CSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCcccccce-EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE----eccEEEEEecCCcccCEEEEEEEE
Confidence 3667665444 44445 999999999998875 2479999999988642211 145679999999999999999999
Q ss_pred cCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcC-CCccC----CcccEEEec-
Q psy535 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR-DGVAL----PKNRVKIVG- 206 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~-~~~~~----~~~~~~~~~- 206 (460)
|. +. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+ .+.|.+.+.|+++ ++..+ ...++....
T Consensus 77 n~-~~--~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~v~l~C~~---~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~ 149 (190)
T 2wv3_A 77 FV-SA--PKANATIEVKAAPDITGHKRSE-NKNEGQDAMMYCKS---VGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149 (190)
T ss_dssp ET-TE--EEEEEEEEEECCCEEEEECSEE-EEETTSCEEEEEEE---ECSSCCEEEEEEEETTEEEECCCTTSCEEEEEC
T ss_pred eC-Cc--ccccEEEEEecCCcccccCCcc-eeeCCCcEEEEEEe---CccCCCceEEEEcCCCceeeeecCCCeEEEecC
Confidence 87 54 4556777778899888777665 68899999999999 7899999999984 23222 233444432
Q ss_pred ---ceEEEcccc-ceeceEEEEEEecccceeeeeeEEEEe
Q psy535 207 ---GNITIEGLR-RVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 207 ---~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
..|.|.++. ..|.|.|+|.|.|..|.......|.|.
T Consensus 150 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 269999999 799999999999999998888887764
No 103
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.91 E-value=4.2e-23 Score=177.99 Aligned_cols=200 Identities=16% Similarity=0.210 Sum_probs=148.6
Q ss_pred CeEEEeec---CCCCCee--EEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535 18 GTLVINPV---GSDDSGL--YMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWT 92 (460)
Q Consensus 18 ~~L~i~~~---~~~d~G~--Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~ 92 (460)
+.|.|..+ +.+|+|. |+|.+.|..|.. ...+.|.|...|...+.+....+.+|+.++|.|.+. |.+ .++|
T Consensus 56 ~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~-~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~-~i~W- 130 (265)
T 2oz4_A 56 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRA-KVTL- 130 (265)
T ss_dssp SEEEEEEEEEECGGGCEEEEEEEEEEETTEEE-EEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTS-EEEE-
T ss_pred CeEEEEeecccccccCCcceEEEEEecCCCCc-EEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCC-EEEE-
Confidence 36777766 7888885 999999998874 678889997644333445556678899999999997 444 8999
Q ss_pred eCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC-CCcc-eeeEEEEEeeCCCceeeC--CCcccccCCCC
Q psy535 93 KDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH-GTQG-SSGQMEVLVRKPPAFTIK--PEAMYQRKVGE 168 (460)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-g~~~-~~~~~~v~v~~~p~~~~~--~~~~~~~~~g~ 168 (460)
+|..+.... ..+.|.|..+..+|+|.|+|.|.|.. |... .+..+.|.|..+|.+... |... .+..|+
T Consensus 131 -~g~~~~~~~-------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~-~v~~g~ 201 (265)
T 2oz4_A 131 -NGVPAQPLG-------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW-TWPENS 201 (265)
T ss_dssp -SSCSSSCCS-------SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEE-EEETTC
T ss_pred -CCEEccCCC-------CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCcc-EEcCCC
Confidence 777764211 12458899999999999999998544 5542 235667777777766544 2233 577899
Q ss_pred eEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 169 ~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
.++|.|.+ .|.|.|.+.|++++..... .+.+. .+...|+|.|+|.|.|..|.....+.|.|..
T Consensus 202 ~~~l~C~~---~g~P~p~i~W~~~~~~~~~-------~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 202 QQTPMCQA---WGNPLPELKCLKDGTFPLP-------IGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp EECCCCCC---EEESCCEEEEEETTTEECC-------TTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEEEEeEC---ccCCCCeEEEEECCcccCC-------CCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 99999998 7999999999996552222 22222 3778999999999999999999888888763
No 104
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.91 E-value=1e-23 Score=188.34 Aligned_cols=267 Identities=14% Similarity=0.212 Sum_probs=170.5
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCC---CCCeEEEeeCCe---------------ecCccccccEEEe----ecCeEE
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANP---TFQYVTWTKDKR---------------LLEPYQTKDIVVM----QNGSLL 115 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~---------------~~~~~~~~~~~~~----~~~~l~ 115 (460)
.+...|....+.+|++++|.|.+.+.+ +...+.|++++. .+......++... .+++|.
T Consensus 16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~ 95 (331)
T 3u83_A 16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR 95 (331)
T ss_dssp -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence 344556778889999999999998752 223699999541 1211223444443 345799
Q ss_pred EeecCCCCCeEEEEEE-EcCCCCcceeeEEEEEeeCCCceee--CCCcccccCCC---CeEEEEeeeeccCCCCCCeeEE
Q psy535 116 FTRVNQNHQGRYTCTP-YNAHGTQGSSGQMEVLVRKPPAFTI--KPEAMYQRKVG---ESVDMHCEAQEAEGTQKPTITW 189 (460)
Q Consensus 116 i~~~~~~d~G~y~C~~-~~~~g~~~~~~~~~v~v~~~p~~~~--~~~~~~~~~~g---~~~~l~C~~~~~~~~p~~~~~W 189 (460)
|.+++.+|+|.|+|.+ .+..+. .+..+.|.|..+|.+.. .+... .+..| +.+.|.|.+. .+.|.+.+.|
T Consensus 96 I~~v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~-~~~~g~~~~~~~l~C~~~--~~~p~~~i~W 170 (331)
T 3u83_A 96 LSRLELEDEGVYICEFATFPTGN--RESQLNLTVMAKPTNWIEGTQAVL-RAKKGQDDKVLVATCTSA--NGKPPSVVSW 170 (331)
T ss_dssp ECSCCGGGCEEEEEEEEEETTEE--EEEEEEEEEEBCCEEEEEECSSCE-EECTTCCCCEEEEEEEEE--EEBSCCEEEE
T ss_pred EcccCcccCcEEEEEEEecCCCc--cEEEEEEEEecCCcceeecCCCce-eecCCCccceEEEEEEec--CCcCCceEEE
Confidence 9999999999999985 444454 45566777777777643 23332 56667 7899999832 7889999999
Q ss_pred EcCCCccCCcccE------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCC--CCceeeeeecceE
Q psy535 190 QRRDGVALPKNRV------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHA--PYNITGVATEFSV 261 (460)
Q Consensus 190 ~~~~~~~~~~~~~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~--p~~~~~~~~~~~~ 261 (460)
+++.......... ......|.|..+...|.|.|+|.|.|..|.......|.|..+|... +........+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~ 250 (331)
T 3u83_A 171 ETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDV 250 (331)
T ss_dssp EESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCE
T ss_pred EcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeE
Confidence 9843222111111 1122357888889999999999999999888777777765422100 0000112234678
Q ss_pred EEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEc-cCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535 262 TLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN-RLTPATTYEFQVVGKNELGDGMLSNIVVVK 337 (460)
Q Consensus 262 ~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~ 337 (460)
.|.|.. .+.+.+ ..+.|++++...... ... ....|.|. ++...+.|.|+|.|.|..|....+..+.+.
T Consensus 251 ~l~C~~--~g~p~p--~~i~W~~~~~~~~~~-~~~---~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 319 (331)
T 3u83_A 251 KLTCKA--DANPPA--TEYHWTTLNGSLPKG-VEA---QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319 (331)
T ss_dssp EEEEEE--EEESCC--CEEEEEETTBSCCTT-EEE---ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred EEEEeC--cCCCCC--CEEEEEECCCccccc-cee---cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence 888874 333333 225777765532111 111 34579999 899999999999999999976444444444
No 105
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.91 E-value=1.9e-22 Score=164.87 Aligned_cols=180 Identities=19% Similarity=0.369 Sum_probs=140.3
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEe----ecCeEEEeecCCCCCeEEEEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~ 130 (460)
|+.+...|....+.+|++++|.|.+.+.++.+.+.|++ ++..+.. ...++... ..+.|.|.++..+|+|.|+|.
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccC-CCCeEEEEECCCCceEEEEccCCcccCEEEEEE
Confidence 45667788888899999999999999977455899999 8887764 23344433 235799999999999999999
Q ss_pred EEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEE-ecc
Q psy535 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKI-VGG 207 (460)
Q Consensus 131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~-~~~ 207 (460)
+.+..+. ..+..+.|.|..+|.+...+... .+..|+.+.|.|.+ .+.|.+.+.|++++..... ..++.. .++
T Consensus 81 ~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 155 (191)
T 1epf_A 81 VTAEDGT-QSEATVNVKIFQKLMFKNAPTPQ-EFKEGEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 155 (191)
T ss_dssp EEETTTE-EEEEEEEEEEECCSEEEECCSSE-ECCTTSCEEECCEE---ECSSCCEEEEEETTEEGGGGCCTTEEECTTS
T ss_pred EEcCCCc-ceEEEEEEEeecCceEecCCCcE-eecCCCeEEEEEEE---CCCCCCEEEEEECCEEeeccCCceEEEecCC
Confidence 9998753 36777888888899888877765 68899999999999 6899999999995543322 223333 355
Q ss_pred eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 208 NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 208 ~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
.|.|.++...|.|.|+|.|.|..+.......+.+
T Consensus 156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 8999999999999999999998865555544443
No 106
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.90 E-value=8e-23 Score=167.98 Aligned_cols=182 Identities=18% Similarity=0.319 Sum_probs=139.3
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEE
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~ 130 (460)
..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.. ..+.....++ +|.|.++..+|+|.|+|.
T Consensus 5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 81 (197)
T 3lcy_A 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKELIQ--SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCI 81 (197)
T ss_dssp CEEEEEEECCCCEEEETTSEEEEEEEEEEESCC-EEEEEETTEEECC--CSSEEEEESSSEEEEEEECCSGGGCEEEEEE
T ss_pred CCCCcccccCCceEEeCCCcEEEEEEEecCCCC-EEEEEECCEECCC--CccEEEEeCCCEEEEEEecCCccCCEEEEEE
Confidence 456778888888889999999999999887765 7999999998863 3444444554 799999999999999999
Q ss_pred EEcCCCCcceeeEEEEEeeCCCceeeC--CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec--
Q psy535 131 PYNAHGTQGSSGQMEVLVRKPPAFTIK--PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG-- 206 (460)
Q Consensus 131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-- 206 (460)
+.|..+..... +.|.|..+|.+... ......+..|+.+.|.|.+ .+.|.+.+.|++++.......+.....
T Consensus 82 ~~n~~~~~~~~--~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~p~v~W~~~~~~~~~~~~~~~~~~~ 156 (197)
T 3lcy_A 82 ATNEVGEVETS--SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY---IGRPVPAMTWFHGQKLLQNSENITIENTE 156 (197)
T ss_dssp EECSSCEEEEE--EEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEE---EEESCCEEEEEETTEECCCCSSEEEEECS
T ss_pred EECCCCceeEE--EEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEE---eeeeCCeeEEeECCEECCCCCceEEEEcC
Confidence 99888775444 44444545544322 1122256789999999999 688999999999554444444554433
Q ss_pred --ceEEEccccc-eeceEEEEEEecccceeeeeeEEEEec
Q psy535 207 --GNITIEGLRR-VDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 207 --~~l~i~~~~~-~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
..|.|.++.. .|.|.|+|.|.|..|.....+.|.|.+
T Consensus 157 ~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp SEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 4699999985 899999999999999998888887753
No 107
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Probab=99.90 E-value=1.8e-22 Score=170.32 Aligned_cols=191 Identities=21% Similarity=0.318 Sum_probs=148.4
Q ss_pred CCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535 245 QPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 323 (460)
Q Consensus 245 ~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n 323 (460)
++.+|.++... ....++.|+|.++ +. .+.+|.+.|+..+...+...... .....+.|.+|.+++.|.|+|.|.|
T Consensus 5 p~~~P~~l~~~~~~~~si~l~W~~p---~g-~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n 79 (234)
T 3f7q_A 5 DLGAPQNPNAKAAGSRKIHFNWLPP---SG-KPMGYRVKYWIQGDSESEAHLLD-SKVPSVELTNLYPYCDYEMKVCAYG 79 (234)
T ss_dssp CCCCCEEEEEEECSSSCEEEEEECC---SS-CCCEEEEEEEETTSCGGGCEEEE-ESSSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCcceEEEEcCCCEEEEEEECC---CC-ccceEEEEEEECCCCccceEEEc-CCccEEEECCCCCCCEEEEEEEEEe
Confidence 67788887754 4566999999986 22 34799999887654332211111 2567899999999999999999999
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535 324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402 (460)
Q Consensus 324 ~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (460)
..|.+..+..+.+.+...+|.+|.++.+...+ +++.|+|++|...++.+.+|.|+|+..+....
T Consensus 80 ~~G~g~~s~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~--------------- 144 (234)
T 3f7q_A 80 AQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNR--------------- 144 (234)
T ss_dssp TTEECCCCCCEEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCSSCCCEEEEEEEEBCTTSC---------------
T ss_pred CCCcCCCCCeEEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCCCceeEEEEEEEECCCCCC---------------
Confidence 99999999999999998889999999998776 58999999998778899999999997543100
Q ss_pred cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce-eEeecC
Q psy535 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI-VVVKTK 460 (460)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~-~~~~T~ 460 (460)
....|..+.......+.+.|.+|.|++.|.|+|+|.|..|.|++|.. +.++|+
T Consensus 145 -----~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~ 198 (234)
T 3f7q_A 145 -----PIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ 198 (234)
T ss_dssp -----BSSCCEECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGS
T ss_pred -----ccCcceEEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecC
Confidence 00113333333456679999999999999999999999999999984 666663
No 108
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.90 E-value=1.1e-22 Score=164.90 Aligned_cols=175 Identities=20% Similarity=0.321 Sum_probs=132.2
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+............ .+.|.|.++..+|+|.|+|.+.
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 80 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSC-CEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCC-eEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence 3566677888889999999999999987665 79999999988643222222111 2579999999999999999999
Q ss_pred cCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEE
Q psy535 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITI 211 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i 211 (460)
+..+.. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+ .+.|.| .+.|++++. .+.... .....|.|
T Consensus 81 ~~~~~~-~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~p~~v~W~~~~~-~~~~~~--~~~~~L~i 152 (182)
T 1rhf_A 81 DGGETE-ISQPVWLTVEGVPFFTVEPKDL-AVPPNAPFQLSCEA---VGPPEPVTIVWWRGTT-KIGGPA--PSPSVLNV 152 (182)
T ss_dssp SCTTCE-ECCCEEEEEECSCEEEECCCCE-EECTTCCEEEEEEE---ECSSSCCEEEEEETTE-ECSCSE--ESSEEEEE
T ss_pred cCCCcE-EEEEEEEEEecCCeEEecCcce-EecCCCEEEEEeEe---cCCCCCCEEEEEcCCe-ECCCCC--CCceEEEE
Confidence 876543 4556777888899988887765 68899999999999 688999 999999544 443222 14567888
Q ss_pred ccccceeceEEEEEEecccceeee-eeEEEE
Q psy535 212 EGLRRVDFGYYECVVSNEVATIVQ-AAQLVV 241 (460)
Q Consensus 212 ~~~~~~~~g~y~C~a~n~~g~~~~-~~~l~v 241 (460)
.++ .|+|.|+|.|.|..|.... .+.|.|
T Consensus 153 ~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 153 TGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp CCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 888 4789999999999998753 666655
No 109
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.90 E-value=2.9e-22 Score=163.37 Aligned_cols=174 Identities=20% Similarity=0.377 Sum_probs=135.4
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcC
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
+...|....+.+|+++.|.|.+.+.|. .+.|++ ++..+.. ..++....++ .|.|.++..+|+|.|+|.+.+.
T Consensus 5 ~~~~~~~~~v~~G~~v~L~C~~~~~p~--~v~W~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 80 (189)
T 2v44_A 5 VTISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIIS--TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 80 (189)
T ss_dssp EEESCSEEEEETTCCEEEEEEEEECCS--EEEEECTTSCBCCC--CSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred EEecCCceEEecCCcEEEEEEeecCCe--eEEEEeCCCCccCC--CceEEEECCCCeEEEEEccCCcccCeEEEEEEEeC
Confidence 456777788899999999999998765 799999 7777653 3455555544 7999999999999999999998
Q ss_pred CCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--CcccEEE-ecceEEE
Q psy535 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--PKNRVKI-VGGNITI 211 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--~~~~~~~-~~~~l~i 211 (460)
.|.. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+ .+.|.|.+.|++++.... ...++.. .++.|.|
T Consensus 81 ~g~~-~~~~~~l~v~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~L~i 155 (189)
T 2v44_A 81 KGQT-QEATVVLEIYQKLTFREVVSPQ-EFKQGEDAEVVCRV---SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 155 (189)
T ss_dssp TSCE-EEEEEEEEEECCCEEESCCCSE-EEETTSCEEECCEE---ECSSCCEEEEEEEC--CEECCCTTEEECTTSCEEE
T ss_pred CCCc-EEEEEEEEEecCCceeecCCcE-EEeCCCCEEEEEEE---CcCCCCcEEEEECCcEEeccCCCCEEEecCCcEEE
Confidence 7765 3667788888888877666554 67899999999999 688999999999655432 2334443 3558999
Q ss_pred ccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 212 EGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 212 ~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
.++...|.|.|+|.|.|..|.......+.+
T Consensus 156 ~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v 185 (189)
T 2v44_A 156 LNINKSDEGIYRCEGRVEARGEIDFRDIIV 185 (189)
T ss_dssp TTCCGGGCEEEEEEEEETTTTEEEEEEEEE
T ss_pred EEcCcccCeEEEEEEEccccCceeeeeEEE
Confidence 999999999999999999876554444433
No 110
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.90 E-value=2.5e-21 Score=182.46 Aligned_cols=313 Identities=15% Similarity=0.133 Sum_probs=177.8
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC-----------C-cceeeeEEEEec----CCeeE-Eccee
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG-----------E-PQAAQAYLNVEF----PAKVT-FTPTV 65 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~-----------~-~~~~~~~l~v~~----~p~~~-~~~~~ 65 (460)
..+|+++..+ .+|.|.+++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+. ..+..
T Consensus 65 ~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~ 144 (512)
T 1zvo_C 65 LRGRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGC 144 (512)
T ss_pred cCCceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCc
Confidence 4689998754 4899999999999999999988642 1 112446777763 34433 22221
Q ss_pred eeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEE-----eecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 66 QYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVV-----MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
.....++.++|.|.+.+. |.+..|+|++++............. ...+.|.|.....+ .|.|+|.|.|..+...
T Consensus 145 ~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~ 223 (512)
T 1zvo_C 145 RHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSK 223 (512)
T ss_pred ccccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCce
Confidence 101235889999999987 5444899999764321101111110 11124888877777 9999999999887654
Q ss_pred eee---------EEEEEeeCC----------------------------------------------------CceeeCC
Q psy535 140 SSG---------QMEVLVRKP----------------------------------------------------PAFTIKP 158 (460)
Q Consensus 140 ~~~---------~~~v~v~~~----------------------------------------------------p~~~~~~ 158 (460)
... .+.|.+..| |.+.+.+
T Consensus 224 ~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~ 303 (512)
T 1zvo_C 224 KEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLT 303 (512)
T ss_pred EEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEEC
Confidence 443 112333222 3332222
Q ss_pred CcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCcc---cEE-------EecceEEEccccceeceEEEEEE
Q psy535 159 EAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKN---RVK-------IVGGNITIEGLRRVDFGYYECVV 226 (460)
Q Consensus 159 ~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~---~~~-------~~~~~l~i~~~~~~~~g~y~C~a 226 (460)
.....+..|+.++|.|.+ .+..+ ..+.|++++....... ... .....|.|......|.|.|+|.|
T Consensus 304 p~~~~~~~g~~~~L~C~v---~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a 380 (512)
T 1zvo_C 304 PAVQDLWLRDKATFTCFV---VGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTL 380 (512)
T ss_pred CChHHhccCCceEEEEEE---eceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEE
Confidence 222245679999999999 55433 4899999654322110 011 01234888888888999999999
Q ss_pred ecccceeeeeeEEEEecCC--CCCCCceee--eeecceEE-EEeecCCCCCCCceeeEEEEEEecCCCCeee-----eec
Q psy535 227 SNEVATIVQAAQLVVEGTQ--PHAPYNITG--VATEFSVT-LEWLPGYSGGPDLKQNYVIWYREQGNKDWLP-----IPV 296 (460)
Q Consensus 227 ~n~~g~~~~~~~l~v~~~~--p~~p~~~~~--~~~~~~~~-l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 296 (460)
.|..+... ...+...... +.+|..... ......+. |.|.. .+..++ .-.+.|++++....... ...
T Consensus 381 ~n~~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~--~g~~P~-~i~v~W~k~g~~~~~~~~~~~~~~~ 456 (512)
T 1zvo_C 381 NHPSLPPQ-RLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEV--SGFSPP-NILLMWLEDQREVNTSGFAPARPPP 456 (512)
T ss_pred EeCCCCCC-ceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEE--eeeCCC-CcEEEEEECCeECcCccccccceeE
Confidence 99877543 2222221111 122322111 11345577 88873 332222 12366777654321110 001
Q ss_pred cCCCC-----ceEEEccCccCccEEEEEEEEcCCCCC
Q psy535 297 TPPGS-----TQITINRLTPATTYEFQVVGKNELGDG 328 (460)
Q Consensus 297 ~~~~~-----~~~~i~~l~~~~~~~~~~~a~n~~G~~ 328 (460)
...+. ..+.+......+.+.|.|.|.|.....
T Consensus 457 ~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~ 493 (512)
T 1zvo_C 457 QPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRT 493 (512)
T ss_pred CCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCC
Confidence 11121 134444444555999999999987543
No 111
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.90 E-value=2.2e-22 Score=167.23 Aligned_cols=182 Identities=24% Similarity=0.346 Sum_probs=134.7
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ecCeEEEeecC-CCCCeEEEEE
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNGSLLFTRVN-QNHQGRYTCT 130 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~-~~d~G~y~C~ 130 (460)
..+|.|...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+........... ....|.|.++. .+|+|.|+|.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~ 82 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRP-KIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV 82 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCC-EEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence 457888888888899999999999999988775 8999999998864221111111 12359999994 9999999999
Q ss_pred EEcCCCCcceeeEEEEEeeCC-------CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc---c
Q psy535 131 PYNAHGTQGSSGQMEVLVRKP-------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK---N 200 (460)
Q Consensus 131 ~~~~~g~~~~~~~~~v~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~---~ 200 (460)
+.|..|.... .+.|.|..+ |.+...+... .+..|+.+.|.|.+ .+.|.+.+.|++++..+... .
T Consensus 83 a~n~~g~~~~--~~~l~V~~~~~~~~~~p~~~~~~~~~-~~~~g~~v~l~C~~---~g~p~p~v~W~~~g~~l~~~~~~~ 156 (212)
T 2yd6_A 83 ASNNVGEISV--STRLTVLREDQIPRGFPTIDMGPQLK-VVERTRTATMLCAA---SGNPDPEITWFKDFLPVDTSNNNG 156 (212)
T ss_dssp EEETTEEEEE--EEEEEEECGGGCCTTCCEEEECCCCE-EEETTSCEEEEEEE---ECSSCCEEEEEETTEEC------C
T ss_pred EEcCCCcEEE--EEEEEEeccCccCCCcceeecCCcce-eEecCCCEEEEEEe---cCCCCCeEEEEECCccccCcCCCc
Confidence 9998887544 444444432 5666666554 57889999999999 78899999999954433221 2
Q ss_pred cEEEe----cceEEEccccceeceEEEEEEecccceeeee-eEEEEe
Q psy535 201 RVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVE 242 (460)
Q Consensus 201 ~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~ 242 (460)
++... ...|.|.++...|.|.|+|.|.|..|....+ ..+.+.
T Consensus 157 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~ 203 (212)
T 2yd6_A 157 RIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203 (212)
T ss_dssp CEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred eEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence 33322 2579999999999999999999999986544 455554
No 112
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.90 E-value=3.5e-23 Score=177.30 Aligned_cols=208 Identities=14% Similarity=0.241 Sum_probs=116.6
Q ss_pred EeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC----CCeE
Q psy535 14 IKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT----FQYV 89 (460)
Q Consensus 14 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~v 89 (460)
+...|.+. ++++|+|.|+|.|. |.. .....+.+..++.+...|....+.+|++++|.|.+.+.++ .+.+
T Consensus 3 ~~~~~~~~---v~~~dsg~Y~C~a~---g~~-~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v 75 (254)
T 2c1o_A 3 LQQSGAEL---VRPGTSVKLSCKAS---GYS-FTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYL 75 (254)
T ss_dssp ------------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCE
T ss_pred eecCCcce---ecCCccEEEEEcCc---hhh-hhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCce
Confidence 33444444 78999999999998 332 3334444555777777788899999999999999988773 2479
Q ss_pred EEeeCC--eec----------CccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC---C
Q psy535 90 TWTKDK--RLL----------EPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---P 151 (460)
Q Consensus 90 ~W~~~~--~~~----------~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~---~ 151 (460)
.|+|++ ..+ ......++.....+ +|.|.+++.+|+|.|+|.|.|..+.. ......+.|.. +
T Consensus 76 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~~~l~V~~~~~~ 154 (254)
T 2c1o_A 76 NWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPT-FGAGTKLELKRADAA 154 (254)
T ss_dssp EEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCE-EBCCEEEEECCCCBC
T ss_pred EEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceE-ecCCEEEEECCCCCC
Confidence 999843 221 11112444444333 79999999999999999999875532 11122344432 5
Q ss_pred CceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCcccEE-----------EecceEEEcccccee
Q psy535 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNRVK-----------IVGGNITIEGLRRVD 218 (460)
Q Consensus 152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~~ 218 (460)
|.+...+... ....|+.++|.|.+ .+ .|. +.+.|++++..+....... .....|.|.++...|
T Consensus 155 P~v~~~~~~~-~~~~g~~v~l~C~~---~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d 230 (254)
T 2c1o_A 155 PTVSIFPPSS-EQLTSGGASVVCFL---NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYER 230 (254)
T ss_dssp CEEEEECCCH-HHHHTTEEEEEEEE---EEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHT
T ss_pred CeeEeecCCh-hhccCCcEEEEEEE---ecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccC
Confidence 6666544433 23357799999998 45 344 4699999554333220110 123468999999999
Q ss_pred ceEEEEEEeccccee
Q psy535 219 FGYYECVVSNEVATI 233 (460)
Q Consensus 219 ~g~y~C~a~n~~g~~ 233 (460)
.|.|+|.|.|.....
T Consensus 231 ~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 231 HNSYTCEATHKTSTS 245 (254)
T ss_dssp CCEEEEEEECTTCSS
T ss_pred CCeEEEEEEcCCCCC
Confidence 999999999976543
No 113
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.90 E-value=4e-23 Score=185.20 Aligned_cols=219 Identities=13% Similarity=0.189 Sum_probs=141.2
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|. .+|.+...+....+.+|++++|.|
T Consensus 64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C 142 (344)
T 1za6_B 64 FKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYW-GQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC 142 (344)
T ss_dssp TBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEE-CCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEE
T ss_pred cCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCccee-cCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEE
Confidence 4689998764 389999999999999999999854332 455678887 244544433334467899999999
Q ss_pred EEecC-CCCCeEEEeeCCeecCccccccEE-----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE------
Q psy535 79 HIKAN-PTFQYVTWTKDKRLLEPYQTKDIV-----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV------ 146 (460)
Q Consensus 79 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v------ 146 (460)
.+.|. |.++.|+|++++..+......... ....+.|.|.++..+| |.|+|.|.|..+.......+.+
T Consensus 143 ~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~ 221 (344)
T 1za6_B 143 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKT 221 (344)
T ss_dssp EEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC---
T ss_pred EEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccc
Confidence 99987 443589999999764311111110 0112368899888888 9999999998775433333321
Q ss_pred ----------------EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-C-CCeeEEEcCCCccCCccc--EE-Ee
Q psy535 147 ----------------LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-Q-KPTITWQRRDGVALPKNR--VK-IV 205 (460)
Q Consensus 147 ----------------~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~~~~~~~~--~~-~~ 205 (460)
.+..+|.+.+.+.....+ .|..++|.|.+ .|. | .+.+.|++++..+..... .. ..
T Consensus 222 ~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~---~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~ 297 (344)
T 1za6_B 222 HTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDEL-TKNQVSLTCLV---KGFYPSDIAVEWESNGQPENNYKTTPPVLDS 297 (344)
T ss_dssp -----------------CCBCCEEEEECCCGGGG-GSSSEEEEEEE---EEEBSSCCEEEEESSSSCCCSEEECCCEECT
T ss_pred cccCCCCCCccccccCCCCcCCEEEEeCCChHhc-cCCcEEEEEEE---eeEECCCeEEEEEECCeECCCcEecceEECC
Confidence 123566665554333233 35569999999 563 4 468999995543322111 11 11
Q ss_pred cc------eEEEccccceeceEEEEEEecccce
Q psy535 206 GG------NITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 206 ~~------~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
++ .|.|......|.|.|+|.|.|....
T Consensus 298 ~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 298 DGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 330 (344)
T ss_dssp TSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred CCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence 22 3445555556689999999986543
No 114
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=99.90 E-value=3.9e-22 Score=163.82 Aligned_cols=184 Identities=27% Similarity=0.452 Sum_probs=145.5
Q ss_pred CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535 245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 323 (460)
Q Consensus 245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n 323 (460)
+|.+|.++.. .....++.|+|.++...+..++..|.+.++..+...|...... .....+.+.+|.+++.|.|+|.|.|
T Consensus 5 ~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~L~p~t~Y~~~V~a~~ 83 (197)
T 3lpw_A 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYYFRVLAEN 83 (197)
T ss_dssp SCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEE-ECSSEEEECCCCTTCEEEEEEEEEE
T ss_pred CCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeecC-CCccEEEEcCCCCCCEEEEEEEEEc
Confidence 5777877764 4677899999998765555545799999998877777665432 2667899999999999999999999
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCC-ccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535 324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERA-SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401 (460)
Q Consensus 324 ~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~-~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~ 401 (460)
..|.+..+....+.+...+|.+|.++.+...+ +++.|+|.+|...+ +.+.+|.|+|+..+..
T Consensus 84 ~~g~~~~s~~~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~---------------- 147 (197)
T 3lpw_A 84 EYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSD---------------- 147 (197)
T ss_dssp TTEECCCEECSSCEESCCCCCCCSCEEEEEECSSCEEEEECCCSCCTTSCCCEEEEEEEETTCS----------------
T ss_pred CccccCCCCCccceecCCCCCCCcccEEEeccCCeEEEEecCCCcCCCCcccEEEEEEEeCCCC----------------
Confidence 99988877666666666778999999988766 69999999987654 4899999999975530
Q ss_pred ccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456 (460)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~ 456 (460)
.|..+.. ...+++.+.+|.|++.|.|+|+|.|..|.|++|....
T Consensus 148 ---------~~~~~~~--~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~ 191 (197)
T 3lpw_A 148 ---------KWATCAT--VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSV 191 (197)
T ss_dssp ---------CCEEEEE--ESSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSS
T ss_pred ---------ceEEeec--ccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcc
Confidence 1222111 2567899999999999999999999999999887643
No 115
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A
Probab=99.89 E-value=4.7e-22 Score=165.50 Aligned_cols=181 Identities=21% Similarity=0.309 Sum_probs=136.5
Q ss_pred eeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeec-----------cCCCCceEEEccCccCccEEEEEEEE
Q psy535 255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPV-----------TPPGSTQITINRLTPATTYEFQVVGK 322 (460)
Q Consensus 255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~i~~l~~~~~~~~~~~a~ 322 (460)
.....++.|+|.++...+. .+.+|.+.++..+. ..|..... .......+.+.+|.+++.|.|+|.|.
T Consensus 12 ~~~~~sv~l~W~~p~~~~~-~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 90 (214)
T 2ibg_A 12 RLSDESVMLRWMVPRNDGL-PIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAV 90 (214)
T ss_dssp EEETTEEEEEEEEECCSSC-CEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTTCEEEEEEEEE
T ss_pred EecCCEEEEEEECCCCCCC-CceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCCCEEEEEEEEE
Confidence 3467799999998776664 45899999988543 56655432 11234678999999999999999999
Q ss_pred cCCCCCCCCC-cEEEEccCC----CCCCCcceEEEeec-ceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCC
Q psy535 323 NELGDGMLSN-IVVVKTKGP----KPGPPRNVSVTEVN-NGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRP 395 (460)
Q Consensus 323 n~~G~~~~s~-~~~~~~~~~----~P~~p~~~~~~~~~-~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~ 395 (460)
|..|.+..+. ...+.+... +|.+|.++.+...+ +++.|+|++|. ..++.+.+|.|+|+..+.
T Consensus 91 n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~----------- 159 (214)
T 2ibg_A 91 YSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSS----------- 159 (214)
T ss_dssp ETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTC-----------
T ss_pred ecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCC-----------
Confidence 9999876655 233333222 34578888887766 58999999996 457899999999997542
Q ss_pred CcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...|..+.......+.++|.+|.|++.|.|+|+|+|..|.|++|..+.++|.
T Consensus 160 -------------~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 211 (214)
T 2ibg_A 160 -------------AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211 (214)
T ss_dssp -------------CSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred -------------CcceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEec
Confidence 0123333333345678999999999999999999999999999999999985
No 116
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.89 E-value=7.7e-22 Score=170.08 Aligned_cols=234 Identities=17% Similarity=0.190 Sum_probs=152.7
Q ss_pred eecceeeEEEEEEEec-CCCC-CeEEEeeCCeecCccccccEEEeecCeEEEeec---CCCCCeE--EEEEEEcCCCCcc
Q psy535 67 YLPFRLQGVVQCHIKA-NPTF-QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV---NQNHQGR--YTCTPYNAHGTQG 139 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~-~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G~--y~C~~~~~~g~~~ 139 (460)
.+.+|++++|.|.+.+ .|.+ ..++|+|+|..+.. .....+..|.+..+ +..|+|. |+|.+.|..|...
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~-----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~ 88 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE 88 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC-----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEE
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc-----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcE
Confidence 5788999999999998 5432 37999999998753 22233446777665 7788885 9999999888754
Q ss_pred eeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceec
Q psy535 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDF 219 (460)
Q Consensus 140 ~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 219 (460)
....+.|....+|.+.. ... .+..|+.++|.|.+ . |.+.+.| ++. .+.... ....|.+..+...|.
T Consensus 89 ~~~~l~V~~~p~p~~~~--~~~-~v~~G~~v~l~C~~---~--p~~~i~W--~g~-~~~~~~---~~~~l~i~~~~~~~~ 154 (265)
T 2oz4_A 89 TLQTVTIYSFPAPNVIL--TKP-EVSEGTEVTVKCEA---H--PRAKVTL--NGV-PAQPLG---PRAQLLLKATPEDNG 154 (265)
T ss_dssp EEEEEEEECCCCCEEEE--SCS-EEETTCEEEEEEEC---C--TTSEEEE--SSC-SSSCCS---SEECCEEECCGGGTT
T ss_pred EEEEEEEeCCCCceeec--CCc-eecCCCcEEEEEEc---c--CCCEEEE--CCE-EccCCC---CcEEEEEccccccCC
Confidence 44444443322444443 233 46779999999997 4 8899999 333 332211 234578889999999
Q ss_pred eEEEEEEeccc-ceee---eeeEEEEecCCCCC----CCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe
Q psy535 220 GYYECVVSNEV-ATIV---QAAQLVVEGTQPHA----PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW 291 (460)
Q Consensus 220 g~y~C~a~n~~-g~~~---~~~~l~v~~~~p~~----p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (460)
|.|+|.|.|.. |... ....|.|..+|... |... ....+..+.|.|. ..+.+.+. +.|++++.
T Consensus 155 g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~-~v~~g~~~~l~C~--~~g~P~p~---i~W~~~~~---- 224 (265)
T 2oz4_A 155 RSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW-TWPENSQQTPMCQ--AWGNPLPE---LKCLKDGT---- 224 (265)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEE-EEETTCEECCCCC--CEEESCCE---EEEEETTT----
T ss_pred ceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCcc-EEcCCCeEEEEeE--CccCCCCe---EEEEECCc----
Confidence 99999998644 6544 55666665432211 1111 1234567777776 45555553 67888765
Q ss_pred eeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535 292 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 292 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
. ... ....+ .+...+.|.|+|.|.|..|....+..+.+
T Consensus 225 ~---~~~-~g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 262 (265)
T 2oz4_A 225 F---PLP-IGESV---TVTRDLEGTYLCRARSTQGEVTREVTVNV 262 (265)
T ss_dssp E---ECC-TTSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred c---cCC-CCcEE---EeehhhCeEEEEEEECCCCcEEEEEEEEE
Confidence 1 111 11122 37789999999999999986655544444
No 117
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.89 E-value=2.1e-22 Score=165.56 Aligned_cols=169 Identities=15% Similarity=0.182 Sum_probs=129.6
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
.|.+...|....+.+|++++|.|.+.+.|.+..+.|+|+|..+... .+.|.|.+++.+|+|.|+|.+.|..
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~~ 77 (204)
T 3sgj_C 7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ---------ASSYFIDAATVDDSGEYRCQTQLST 77 (204)
T ss_dssp BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC---------SSEEEESSCCGGGCEEEEEEETTSB
T ss_pred CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC---------ccEEEEecccccCCEEEEEEeCCCc
Confidence 3556677777788999999999999998776569999999988632 2679999999999999999998732
Q ss_pred CCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEcccc
Q psy535 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLR 215 (460)
Q Consensus 136 g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~ 215 (460)
.+..+.|.|..+|.+...+.. .+..|+.++|.|.+. .+.|.+.+.|++++. .+ ........|.|.++.
T Consensus 78 ----~s~~~~l~V~~~p~~~~~~~~--~v~~G~~v~L~C~~~--~~~p~~~v~W~k~g~-~~---~~~~~~~~L~i~~v~ 145 (204)
T 3sgj_C 78 ----LSDPVQLEVHIGWLLLQAPRW--VFKEEDPIHLRCHSW--KNTALHKVTYLQNGK-GR---KYFHHNSDFYIPKAT 145 (204)
T ss_dssp ----CCCCEEEEEECSSEEEECSCS--EEETTCCEEEEEEEG--GGCCCEEEEEEETTE-EE---EEEEECCCEEESSCC
T ss_pred ----ccccEEEEEecCceEecCCce--eEeCCCcEEEEEEec--CCCCCceEEEEECCc-Ee---ecccCCceEEECcCC
Confidence 344566777777766665552 577899999999983 445678999999543 32 122346789999999
Q ss_pred ceeceEEEEEEec-ccceeeeeeEEEEecCC
Q psy535 216 RVDFGYYECVVSN-EVATIVQAAQLVVEGTQ 245 (460)
Q Consensus 216 ~~~~g~y~C~a~n-~~g~~~~~~~l~v~~~~ 245 (460)
..|.|.|+|.|.| ..+..+..+.|.|..++
T Consensus 146 ~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~ 176 (204)
T 3sgj_C 146 LKDSGSYFCRGLVGSKNVSSETVQITITQGL 176 (204)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred cccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence 9999999999999 44556667778887643
No 118
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.89 E-value=2.6e-22 Score=167.04 Aligned_cols=182 Identities=16% Similarity=0.278 Sum_probs=136.9
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeec----------CccccccEEEeecCeEEEeecCCCCCeE
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL----------EPYQTKDIVVMQNGSLLFTRVNQNHQGR 126 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 126 (460)
..+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+ ......++.. ..+.|.|.++..+|+|.
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~v~~~D~G~ 79 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTF-SSSGITFSSVTRKDNGE 79 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSE-EEEEEEEETTEEEEEEETTEECGGGTTTEEE-ETTEEEESCCCGGGCEE
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCc-EEEEEECCCceeeEEecCCcccccccCcEEe-eceeEEEcccCcccCeE
Confidence 345566777888999999999999987655 79999987653 1112334443 34889999999999999
Q ss_pred EEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-c-----
Q psy535 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-N----- 200 (460)
Q Consensus 127 y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~----- 200 (460)
|+|.+.+..|....+..+.|.|..+|.+...+... .+..|+.+.|.|.+. .+.|.+.+.|++++...+.. .
T Consensus 80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~~--~~~p~~~i~W~~~~~~~l~~~~~~~~~ 156 (212)
T 1f97_A 80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPS-SVTIGNRAVLTCSEH--DGSPPSEYSWFKDGISMLTADAKKTRA 156 (212)
T ss_dssp EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCS-EEETTSCEEEEEECS--CCBSCCEEEEEETTEESBC-----CBS
T ss_pred EEEEEEccCCCcccEEEEEEEEEcCCCCcccCCcc-ccCCCCeEEEEEEcc--cCcCCCEEEEEeCCccccccccccccc
Confidence 99999998775556777888888888776555444 578899999999932 78899999999955413332 1
Q ss_pred ----cEEE--ecceEEEccccceeceEEEEEEeccccee--eeeeEEEEec
Q psy535 201 ----RVKI--VGGNITIEGLRRVDFGYYECVVSNEVATI--VQAAQLVVEG 243 (460)
Q Consensus 201 ----~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~--~~~~~l~v~~ 243 (460)
+... ..+.|.|.++...|.|.|+|.|.|..|.. +..+.|.|..
T Consensus 157 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 157 FMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 1222 25579999999999999999999999987 4455666553
No 119
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=99.89 E-value=1.7e-21 Score=170.42 Aligned_cols=214 Identities=19% Similarity=0.205 Sum_probs=159.1
Q ss_pred EEccccceeceEEEEEEecccceeeeeeEEEEecC---CCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEec
Q psy535 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT---QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ 286 (460)
Q Consensus 210 ~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~---~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~ 286 (460)
.+..+.....+.+++.|.|..|....+. +.+... ++.++.++.......++.|+|.++.. .+.+|.+.|+..
T Consensus 64 ~~~~l~p~t~Y~~~V~A~n~~G~s~~s~-~~~~~~~~~~~~p~~~~~~~~~~~si~l~W~~p~~----~i~~Y~v~~~~~ 138 (290)
T 3l5i_A 64 KLTVNLTNDRYLATLTVRNLVGKSDAAV-LTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE----SVKKYILEWCVL 138 (290)
T ss_dssp EEEEEECSSCEEEEEEEEESSCBCCCEE-EEECCTTCCCCCCCEEEEEEEETTEEEEEEECCSS----CCCEEEEEEEEE
T ss_pred EEEEEcCCceEEEEEEEEcCCCCCCCce-EEeecccccCCCccceeEEEeCCCeEEEEEeCCCC----CCCcEEEEEEEC
Confidence 3445556677899999999988765443 333322 45555566655556799999998643 347999988876
Q ss_pred CCC-----CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEE
Q psy535 287 GNK-----DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVI 360 (460)
Q Consensus 287 ~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l 360 (460)
... .|.... ......+.+.+|.+++.|.|++.|.|..|.+. +..+.+.+...+|..|..+.+...+ +++.|
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~-~~~~~~~t~~~~P~~~p~~~~~~~~~~sv~l 215 (290)
T 3l5i_A 139 SDKAPCITDWQQED--GTVHRTYLRGNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGPTVRTKKVGKNEAVL 215 (290)
T ss_dssp CSSSCCCCEEEEEE--TTCSEEECCSCCCTTCEEEEEEEEEETTEECC-CEEEEEESSCCCCSSCCCEEEEEECSSCEEE
T ss_pred CCCCCCCcCeEEcc--CCCcceEEecCcCCccEEEEEEEEEeCCcccc-cEEEEeEccccCCCCCCeeeEeeccCCEEEE
Confidence 543 244442 33556788899999999999999999999886 4566666777777666677776665 69999
Q ss_pred EecCC--CCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEE
Q psy535 361 SWQPP--LERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 437 (460)
Q Consensus 361 ~W~~~--~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~ 437 (460)
+|+++ ...++.+.+|.|+|+..+. |... ......+.++|.+|.|++.|.
T Consensus 216 ~W~~~~~~~~~g~i~~Y~v~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~L~p~t~Y~ 267 (290)
T 3l5i_A 216 EWDQLPVDVQNGFIRNYTIFYRTIIGNETAV----------------------------NVDSSHTEYTLSSLTSDTLYM 267 (290)
T ss_dssp EECCCCHHHHSSCCCEEEEEEEETTSCCEEE----------------------------EEETTCSEEEECSCCTTCEEE
T ss_pred EEcCCChhccCCEEEEEEEEEEeCCCCeEEE----------------------------EeCCCceEEEeCCCCCCCEEE
Confidence 99954 3558899999999997643 1111 112467899999999999999
Q ss_pred EEEEEeecCCCCCCCceeEeecC
Q psy535 438 FQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 438 ~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
|+|+|.|..| |++|..+.|+|.
T Consensus 268 ~~V~A~n~~G-g~~s~~~~~~T~ 289 (290)
T 3l5i_A 268 VRMAAYTDEG-GKDGPEFTFTTP 289 (290)
T ss_dssp EEEEEEETTE-EEECCCEEEECC
T ss_pred EEEEEEeCCC-CCCCCceEeecC
Confidence 9999999999 899999999985
No 120
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=166.18 Aligned_cols=177 Identities=11% Similarity=0.182 Sum_probs=124.3
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee-cC--eEEEeecCCCCCeEEEEEEEc
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NG--SLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~--~l~i~~~~~~d~G~y~C~~~~ 133 (460)
|.|. .+....+.+|+.+.|.|.+.+..+.+.|+|++||.++......++.... ++ +|.|.++..+|+|.|+|.|.|
T Consensus 4 p~~~-~~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N 82 (207)
T 3rbs_A 4 PFTK-SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD 82 (207)
T ss_dssp --CC-EEEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred Ceee-cCCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence 4443 3445678889999999999764334489999999999753333333211 12 599999999999999999998
Q ss_pred CCCCcceeeEEEEE--------------e-----eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCCeeEEEcCC
Q psy535 134 AHGTQGSSGQMEVL--------------V-----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKPTITWQRRD 193 (460)
Q Consensus 134 ~~g~~~~~~~~~v~--------------v-----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~~~~W~~~~ 193 (460)
|.......+.+. + ..+|.+...+ . ..+..|+.+.|.|.+ .|. |.|.+.|++++
T Consensus 83 --g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~-~~v~~g~~v~l~C~v---~g~~P~p~i~W~k~g 155 (207)
T 3rbs_A 83 --GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-S-WEVTGECNVLLKCKV---ANIKKETHIVWYKDE 155 (207)
T ss_dssp --TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-E-EEEETTTEEEEEEEE---ESCCTTCEEEEEETT
T ss_pred --CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-C-cEEcCCCcEEEEEEE---eCCCCCCEEEEEECC
Confidence 433222222110 0 0256555443 2 367889999999998 677 99999999965
Q ss_pred CccCCcccEEEec--ceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 194 GVALPKNRVKIVG--GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 194 ~~~~~~~~~~~~~--~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
..+....++.... ..|.|.++...|+|.|+|.|.|..|....+..|..
T Consensus 156 ~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 156 REISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp EEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred EECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 5443333332222 36999999999999999999999999888877754
No 121
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=199.96 Aligned_cols=270 Identities=21% Similarity=0.333 Sum_probs=182.6
Q ss_pred CCCcccccCCCCeEEEEeeeeccC----CCCCCeeEEEcCCCccCCcccEEEe---cceEEEccccceeceEEEEEEecc
Q psy535 157 KPEAMYQRKVGESVDMHCEAQEAE----GTQKPTITWQRRDGVALPKNRVKIV---GGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l~C~~~~~~----~~p~~~~~W~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.|... .+..|++++|.|.+..+. +.+.+.+.|+++ +..+........ ...|.|.++...+. .|.|.+...
T Consensus 9 ~p~~~-~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~-~~~i~~~~~~~~~~~~~~l~i~~~~~~~~-~y~C~~~~~ 85 (589)
T 3l5h_A 9 SPESP-VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTN-HFTIPKEQYTIINRTASSVTFTDIASLNI-QLTCNILTF 85 (589)
T ss_dssp SCSCC-CCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCS-SSBSCGGGCBCCSSSCCBCCCCCCCSSCC-CCCCC-CCT
T ss_pred ecCCC-EEeCCCCEEEEEEEeCccCccccccccceEEEeC-CEECChHHccccCCcEeEEEEecCCCcce-eeEEecccC
Confidence 45554 678999999999984221 567789999985 455544433322 33688888888765 477887632
Q ss_pred c--ceeeeeeEEEEecCCCCCCCceeeee-ecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEE
Q psy535 230 V--ATIVQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306 (460)
Q Consensus 230 ~--g~~~~~~~l~v~~~~p~~p~~~~~~~-~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 306 (460)
. ........|.+. .+|.+|.++.+.. ....++++|.++...+. ...|.+.++.... .+............+.+
T Consensus 86 ~~~~~~~~~~~l~v~-~pP~~P~nl~c~~~~~~~~~~~W~~~~~~~~--~~~y~l~~~~~~~-~~~~c~~~~~~~~~c~~ 161 (589)
T 3l5h_A 86 GQLEQNVYGITIISG-LPPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATH-KFADCKAKRDTPTSCTV 161 (589)
T ss_dssp TCC-CCCCCCCCCC--CCCCCCEEEEEEEETTSCEEEEEECCSCCSS--CEEEEECCBCSSS-BCCCEECBTTBSSCCBC
T ss_pred CCcccEEEeEEEecc-CCCCCCEeeEEEECCCceEEEEECCCCcCCc--CceEEEEEEEcCC-CcccCCCCCCCcEEEEE
Confidence 1 112233344443 4788888887643 45689999998765433 3688888765442 22222222223455666
Q ss_pred c-cCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEe--ec-ceEEEEecCCCCCCccceEEEEEEEE
Q psy535 307 N-RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTE--VN-NGFVISWQPPLERASLIQYYLIKYRT 381 (460)
Q Consensus 307 ~-~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~--~~-~~v~l~W~~~~~~~~~i~~y~i~~~~ 381 (460)
. ++.+...|.|+|.|.|..|.+. +..+.+.... ..|.||.++.+.. .. +++.|+|++|...++++.+|+|+|+.
T Consensus 162 ~~~l~~~~~Y~~~v~a~n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~~~ 240 (589)
T 3l5h_A 162 DYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT 240 (589)
T ss_dssp CSCCCSSSCEEECEEEEESSCCBC-CCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEEEE
T ss_pred CCCCchheeEEEEEEEEeCCCCcc-cccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEECC
Confidence 6 7889999999999999999863 4556665443 2589999999853 33 58999999998777889999999998
Q ss_pred cCCeeeeccccCCCCcccccccceecCceeeeeecc--CCCCcceEEECCCCcCceEEEEEEEeecCCCCCC---CceeE
Q psy535 382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV--TPPGSTQITINRLTPATTYEFQVVGKNELGDGML---SNIVV 456 (460)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~---s~~~~ 456 (460)
.+. ..|..+.. .......+.+.+|.|++.|.|+|+|.|..|.|.+ |..+.
T Consensus 241 ~~~-------------------------~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~ 295 (589)
T 3l5h_A 241 KDA-------------------------STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEAS 295 (589)
T ss_dssp TTC-------------------------SCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBC
T ss_pred CCC-------------------------CCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccc
Confidence 642 11222211 1235678999999999999999999999998766 55555
Q ss_pred eec
Q psy535 457 VKT 459 (460)
Q Consensus 457 ~~T 459 (460)
++|
T Consensus 296 ~~T 298 (589)
T 3l5h_A 296 GIT 298 (589)
T ss_dssp CCC
T ss_pred ccc
Confidence 555
No 122
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Probab=99.88 E-value=1.6e-21 Score=162.34 Aligned_cols=188 Identities=24% Similarity=0.318 Sum_probs=140.0
Q ss_pred CCCCCCCceeeeee-cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccC-ccCccEEEEEEE
Q psy535 244 TQPHAPYNITGVAT-EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRL-TPATTYEFQVVG 321 (460)
Q Consensus 244 ~~p~~p~~~~~~~~-~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~~~~~~~~a 321 (460)
.+|.+|.++.+... ...+.|+|.++...+.. ..|.+.++..+...+... ........+.|.+| .+.+.|.|+|.|
T Consensus 6 ~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~~~--~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~~~~t~Y~~~V~A 82 (215)
T 1bqu_A 6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCK-AKRDTPTSCTVDYSTVYFVNIEVWVEA 82 (215)
T ss_dssp CCCCCCEEEEEEEETTSCCEEEEECCSCCSSC--CEEEEEEEETTEECCCEE-CCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred CCCCCCEeeEeEECCCCcEEEEcCCCCCCCCC--ceEEEEEEEcCCCccccc-cccCCcceEEEcCCccccccEEEEEEE
Confidence 47888888876544 37899999988766543 589999876543222211 22235578999999 899999999999
Q ss_pred EcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee--c-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCc
Q psy535 322 KNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV--N-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEE 397 (460)
Q Consensus 322 ~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~--~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~ 397 (460)
.|..|.+. +..+.+.+.. ..|.+|.++.+... + +++.|+|++|...++.+.+|+|+|+..+.
T Consensus 83 ~n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~~~~------------- 148 (215)
T 1bqu_A 83 ENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDA------------- 148 (215)
T ss_dssp EETTEEEE-CCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTC-------------
T ss_pred EecccCcc-CCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCcceEEEEEEEccCCC-------------
Confidence 99999875 4455554433 35889999998764 3 69999999998777889999999997542
Q ss_pred ccccccceecCceeeeeecc--CCCCcceEEECCCCcCceEEEEEEEeecCCCCC---CCceeEeecC
Q psy535 398 NSYLGEYREQGNKDWLPIPV--TPPGSTQITINRLTPATTYEFQVVGKNELGDGM---LSNIVVVKTK 460 (460)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~---~s~~~~~~T~ 460 (460)
..|..+.. .....+.+.|.+|.|++.|.|+|+|.|..|.|. +|+.+.++|+
T Consensus 149 ------------~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~ 204 (215)
T 1bqu_A 149 ------------STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 204 (215)
T ss_dssp ------------SSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEEC
T ss_pred ------------CCceEeccccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCccccccc
Confidence 12322221 134678999999999999999999999999865 5666777774
No 123
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.88 E-value=1.4e-21 Score=159.77 Aligned_cols=176 Identities=19% Similarity=0.371 Sum_probs=133.3
Q ss_pred CCeeEEcc--eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEE
Q psy535 56 PAKVTFTP--TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 56 ~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
||.+.+.+ ....+.+|++++|.|.+.+.|.+ .+.|++++..+... .++... .+..|.|.++..+|+|.|+|.+.
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 78 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEEN--EKYILKGSNTELTVRNIINSDGGPYVCRAT 78 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCC-EEEEEETTEECCCS--SSEEEETTTTEEEECSCCGGGCEEEEEEEE
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCC-eEEEEECCeEcCCC--ccEEEeCCeeEEEEecCChhcCcEEEEEEE
Confidence 56665543 45678889999999999988765 79999999988642 333333 34579999999999999999999
Q ss_pred cCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCC-CccCC------cccEEEe
Q psy535 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD-GVALP------KNRVKIV 205 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~-~~~~~------~~~~~~~ 205 (460)
+..+... ..+.|.|..+|.+...+.. .+..|+.+.|.|.+ .+.|.+.+.|++++ +..+. ..++...
T Consensus 79 ~~~~~~~--~~~~l~V~~~p~~~~~~~~--~~~~g~~v~l~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
T 2va4_A 79 NKAGEDE--KQAFLQVFVQPHIIQLKNE--TTYENGQVTLVCDA---EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 151 (192)
T ss_dssp ETTEEEE--EEEEEEEEEEEEEEEECCE--EECTTSEEEEEEEE---EEESCCEEEEEETTTTEEECTTCBCTTSCEEEE
T ss_pred ccccccc--eEEEEEEEccCcccccCcc--eEEeCCeEEEEEEe---cCCCCCcEEEEeCCCCceeeccccccCCcEEEe
Confidence 9877654 4455666667776654433 45679999999998 67899999999853 22221 2233332
Q ss_pred ----cceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 206 ----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 206 ----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
...|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus 152 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 191 (192)
T 2va4_A 152 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191 (192)
T ss_dssp EETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred eccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEe
Confidence 247999999999999999999999999888887766
No 124
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.88 E-value=3.1e-22 Score=185.99 Aligned_cols=212 Identities=13% Similarity=0.165 Sum_probs=141.9
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec--CCeeEEcceeeeecceeeEEEEEEEecCCC-CCeEEEeeC
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--PAKVTFTPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKD 94 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~ 94 (460)
+.|.|.+++.+|+|.|+|.|.|..+.. .+.+.+.. ++.....|....+.+|++++|.|.+.+.|. .+.+.|+|+
T Consensus 181 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~ 257 (438)
T 1qgc_4 181 STLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQ 257 (438)
T ss_dssp EEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred EEEEEeCcccCCCCeEEEEEEecccCC---ceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEEC
Confidence 379999999999999999999987753 23334432 222334456677889999999999999872 347999996
Q ss_pred --CeecCc---------------cccccEEEeec-----CeEEEeecCCCCCeEEEEEEEcCCCC---cceeeEEEEEee
Q psy535 95 --KRLLEP---------------YQTKDIVVMQN-----GSLLFTRVNQNHQGRYTCTPYNAHGT---QGSSGQMEVLVR 149 (460)
Q Consensus 95 --~~~~~~---------------~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v~ 149 (460)
+..+.. ....++....+ ..|.|.+++.+|+|.|+|.|.|..+. ........+.|.
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~ 337 (438)
T 1qgc_4 258 TPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVS 337 (438)
T ss_dssp ETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEEC
T ss_pred CCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEe
Confidence 443210 11234444432 27999999999999999999984431 011122334444
Q ss_pred ----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEEEcCCCccCCc---ccEE-----EecceEEEcccc
Q psy535 150 ----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITWQRRDGVALPK---NRVK-----IVGGNITIEGLR 215 (460)
Q Consensus 150 ----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~~~~~---~~~~-----~~~~~l~i~~~~ 215 (460)
.+|.+...+... .+..|+.++|.|.+ .+. |.+ .+.|++++. .+.. .... ...+.|.|.++.
T Consensus 338 ~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~P~~~~v~W~~~g~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~ 412 (438)
T 1qgc_4 338 AAKTTPPSVYPLAPGS-AAAAASMVTLGCLV---KGYFPEPVTVTWNSGSL-SSGVHTFPAVLQSDLYTLSSSVTVPSST 412 (438)
T ss_dssp SSCCBCCEEEEECCCG-GGCCSSEEEEEEEE---ESCBSSCCEEEEGGGTC-CSSEEECCCEEETTEEEEEEEEEEEEEH
T ss_pred cCCCCCCeEEEcCccc-ccccCCcEEEEEEe---ccccCCCcEEEEecCCC-CCceeecCccccCCcEEEEEEEEEehhh
Confidence 345444333333 46789999999999 565 877 999998544 3321 1111 112258888888
Q ss_pred ceeceEEEEEEecccceeeeeeE
Q psy535 216 RVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 216 ~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
..| |.|+|.|.|..|.......
T Consensus 413 ~~d-g~Y~C~a~n~~g~~~~~~~ 434 (438)
T 1qgc_4 413 WPS-ETVTCNVAHPASSTKVDKK 434 (438)
T ss_dssp HHH-SCCEEEEEEGGGTEEEEEE
T ss_pred cCC-ceEEEEEEeCCCCcceeee
Confidence 888 9999999999987654443
No 125
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.88 E-value=2.5e-21 Score=164.53 Aligned_cols=179 Identities=23% Similarity=0.364 Sum_probs=130.0
Q ss_pred ceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc--cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK--DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
+....+.+|+++.|.|.+.+.|.+ .+.|++++..+...... .........|.|.+++.+|+|.|+|.+.+..+....
T Consensus 22 ~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~ 100 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 100 (241)
T ss_dssp CCEEEEETTSEEEEECCEECSSCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred CcceEEcCCCeEEEEEEecCCCCc-eeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEE
Confidence 346788899999999999998766 89999999988643221 233344568999999999999999999998877655
Q ss_pred eeEEEEEeeC--CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEc----CCCccCCccc--EEE--------
Q psy535 141 SGQMEVLVRK--PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR----RDGVALPKNR--VKI-------- 204 (460)
Q Consensus 141 ~~~~~v~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~----~~~~~~~~~~--~~~-------- 204 (460)
...+.|.... +|.+...+.....+..|+.+.|.|.+ .+.|.+.+.|++ ++........ ...
T Consensus 101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~---~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (241)
T 3grw_A 101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISES 177 (241)
T ss_dssp EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEE---ECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSB
T ss_pred EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEE---ecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeee
Confidence 5444443321 23333332222367889999999999 788999999998 4443322221 110
Q ss_pred --ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535 205 --VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245 (460)
Q Consensus 205 --~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~ 245 (460)
....|.|.++...|.|.|+|.|.|..|.....+.|.|..++
T Consensus 178 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p 220 (241)
T 3grw_A 178 VEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220 (241)
T ss_dssp SEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred cCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence 23469999999999999999999999999999988887643
No 126
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=165.88 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=113.1
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+|.+...|.. .+.+|++++|.|.+.+.+. .+.|+|++..+............++.|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ--EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP 80 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC--EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc--EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence 35677777764 7889999999999987654 79999999876431111111123457999999999999999999988
Q ss_pred CCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE-EE-----e
Q psy535 135 HGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV-KI-----V 205 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~-~~-----~ 205 (460)
.|....+..+.|.|.. +|.+...+. ..+..|+.++|.|.+ .+.| +.+.|++++......... .. .
T Consensus 81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~~--~~v~~G~~v~L~C~~---~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~ 154 (196)
T 2d3v_A 81 AGWSEPSDPLELVVTGFYNKPTLSALPS--PVVTSGENVTLQCGS---RLRF-DRFILTEEGDHKLSWTLDSQLTPSGQF 154 (196)
T ss_dssp TEECBCCCCEEEEEECSSCCCEEEC-------------CEEEEEE---SSCC-SEEEEEEC---CCEEEEECEECTTSCE
T ss_pred CCcCCcCccEEEEecCCCCCCeEEccCC--ccccCCCcEEEEEEc---CCCC-CEEEEEccCCcccccccccccccCCCc
Confidence 7655445566666665 455554443 257899999999998 6777 899999955433221111 11 1
Q ss_pred cceEEEccccceeceEEEEEEecccce
Q psy535 206 GGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 206 ~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
...|.|.++...|+|.|+|.|.|..+.
T Consensus 155 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 155 QALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp EEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred eeEEEeeecCcccCeeEEEEEEccCCC
Confidence 257999999999999999999997653
No 127
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.88 E-value=3e-21 Score=160.78 Aligned_cols=185 Identities=22% Similarity=0.287 Sum_probs=145.9
Q ss_pred CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEe----cceEEEccccceeceEEE
Q psy535 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIV----GGNITIEGLRRVDFGYYE 223 (460)
Q Consensus 150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~~~g~y~ 223 (460)
.+|.+ ..+... .+..|+.+.|.|.+ .+.|.|.+.|++++..+... .++.+. ...|.|.++...|.|.|+
T Consensus 18 ~~P~~-~~p~~~-~~~~G~~v~l~C~~---~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (215)
T 3mtr_A 18 YAPKL-QGPVAV-YTWEGNQVNITCEV---FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN 92 (215)
T ss_dssp EEEEE-ECCSEE-EECTTCCEEEEEEE---EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEE
T ss_pred cCCcc-cCCceE-EEECCCCEEEEEEE---eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEE
Confidence 35555 355554 68899999999999 78899999999955433322 234443 357999999999999999
Q ss_pred EEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccC---CC
Q psy535 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP---PG 300 (460)
Q Consensus 224 C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 300 (460)
|.|.|..|.......+.+.. +|.+|..+........+.|.|.++...+..++..|.+.|+..+...|....... ..
T Consensus 93 C~a~n~~g~~~~~~~l~v~~-~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~ 171 (215)
T 3mtr_A 93 CTAVNRIGQESLEFILVQAD-TPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 171 (215)
T ss_dssp EEEECSSCEEEEEEEEEECC-CCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHH
T ss_pred EEEEECCCceEEEEEEEECC-CCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccc
Confidence 99999999998888888875 577777766666778999999977666666668999999988877777553211 12
Q ss_pred CceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccC
Q psy535 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG 340 (460)
Q Consensus 301 ~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~ 340 (460)
...+.|.+|.+++.|.|+|.|.|..|.+.+|..+.+.+.+
T Consensus 172 ~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p 211 (215)
T 3mtr_A 172 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211 (215)
T ss_dssp HTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred cccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence 2689999999999999999999999999999999988753
No 128
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.88 E-value=3.8e-22 Score=165.70 Aligned_cols=180 Identities=15% Similarity=0.180 Sum_probs=125.2
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccE-EEeecC--eEEEeecCCCCCeEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDI-VVMQNG--SLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~--~l~i~~~~~~d~G~y~C~~ 131 (460)
.+|.+...|. ..+.+|++++|.|.+.+ +. +.+.|+|+|..+.... ... .....+ .|.|.+++.+|+|.|+|.+
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~-~~~~W~k~g~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 83 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EA-YLTQLMIIKNSTYREI-GRRLKFWNETDPEFVIDHMDANKAGRYQCQY 83 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCCT-TC-SEEEEEEEETTEEEEC-SEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcCC-CC-CEEEEEECCCcccccc-cccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence 3566777776 57889999999999976 43 4799999987654211 111 112344 8999999999999999999
Q ss_pred EcCCCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecce
Q psy535 132 YNAHGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN 208 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 208 (460)
.|..+....+..+.|.|.. +|.+...+.. .+..|+.++|.|.. .+.+.+.+.|++++.............+.
T Consensus 84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~--~v~~G~~v~L~C~~---~~~~~~~~~W~k~g~~~~~~~~~~~~~~~ 158 (218)
T 1uct_A 84 RIGHYRFRYSDTLELVVTGLYGKPFLSADRGL--VLMPGENISLTCSS---AHIPFDRFSLAKEGELSLPQHQSGEHPAN 158 (218)
T ss_dssp EETTTEEEECCCEEEEEECSSCCCEEEESSCS--EECTTCCCEEEEEC---SSSCCSEEEEEETTCSSCCSEEECSSSEE
T ss_pred EcCCCceeecCCEEEEEcCcccCCEEEeCCCC--ccCCCCCEEEEEeC---CCCCCCEEEEEECCCcccccccCCCccCE
Confidence 9977644455566777654 5666555532 57899999999965 56677899999955433221111123567
Q ss_pred EEEccccceeceEEEEEEecccc-----eeeeeeEEEEec
Q psy535 209 ITIEGLRRVDFGYYECVVSNEVA-----TIVQAAQLVVEG 243 (460)
Q Consensus 209 l~i~~~~~~~~g~y~C~a~n~~g-----~~~~~~~l~v~~ 243 (460)
|.|.++...|+|.|+|.|.|... ..+..+.|.|.+
T Consensus 159 L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 159 FSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp EECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred EEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence 99999999999999999998532 223445666654
No 129
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.88 E-value=1e-21 Score=160.10 Aligned_cols=147 Identities=20% Similarity=0.332 Sum_probs=123.3
Q ss_pred CcccCcccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEE
Q psy535 2 NTKVGSLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 2 ~~~~~~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
|++....++|+.+..++ +|.|.+++.+|+|.|+|.+.+..|...+..+.|.|..+|.+...+....+.+|+.++|.|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C 118 (189)
T 2v44_A 39 QGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 118 (189)
T ss_dssp TSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCCEEESCCCSEEEETTSCEEECC
T ss_pred CCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCCCcEEEEEEEEEecCCceeecCCcEEEeCCCCEEEEE
Confidence 45556667888888876 999999999999999999999988765778899999888887777777888999999999
Q ss_pred EEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 79 HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 79 ~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
.+.+.|.+ .+.|++++..+......++....++.|.|.++..+|+|.|+|.|.|..+.......+.|.|.
T Consensus 119 ~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~Vn 188 (189)
T 2v44_A 119 RVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 188 (189)
T ss_dssp EEECSSCC-EEEEEEEC--CEECCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred EECcCCCC-cEEEEECCcEEeccCCCCEEEecCCcEEEEEcCcccCeEEEEEEEccccCceeeeeEEEEEe
Confidence 99998876 79999999988654556777777889999999999999999999999877766667766653
No 130
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=99.88 E-value=7.4e-20 Score=160.77 Aligned_cols=273 Identities=15% Similarity=0.199 Sum_probs=169.3
Q ss_pred EcceeeeecceeeEEEEEEEecC------CCCCeEEEeeCCeecCccccccEEEeec--CeEEEeecCCCCCeEEEEEEE
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKAN------PTFQYVTWTKDKRLLEPYQTKDIVVMQN--GSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~------~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~ 132 (460)
+.|....+..|++++|.|.+.+. .+.+.|.|+++|..+... ++.+... +.|.|.++...| |.|+|.|.
T Consensus 9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~---~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~ 84 (303)
T 1i1r_A 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE---QYTIINRTASSVTFTDIASLN-IQLTCNIL 84 (303)
T ss_dssp EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG---GCEEEETTEEEEEECSCCCSE-EEEEEEEE
T ss_pred EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh---heeeeCCcEEEEEEcCcCCCc-eEEEEecc
Confidence 46777888999999999999863 233479999999988532 3333333 369999999885 99999998
Q ss_pred cCCCCcceeeEEEEEeeCCCceeeCCCccc-ccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccCCcccEEEecceEE
Q psy535 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMY-QRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVALPKNRVKIVGGNIT 210 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~l~ 210 (460)
+..+.......+.|.+..+|.. |.... .......+.|.+....+.+.+ ...+.+...++..............+.
T Consensus 85 ~~g~~~~~~~~~~l~v~~~P~~---P~~l~~~~~~~~~v~l~W~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 161 (303)
T 1i1r_A 85 TFGQLEQNVYGITIISGLPPEK---PKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCT 161 (303)
T ss_dssp ETTTEEEEEEEEEEEEECCCCC---CEEEEEEEETTSCCEEEEECCSCCSSCCEEEEEEEETTEECCCEECCSSCTTEEE
T ss_pred cCCCcceEEEEEEEeccCCCCC---CeeeEEEECCCCcEEEEccCCCCCCCCcCEEEEEEecCCCCccCCCcCCCceEEE
Confidence 7422222233455566666532 11110 111113333333321111111 012222211110000000000123577
Q ss_pred Eccc-cceeceEEEEEEecccceeeee-eEEEE-ecCCCCCCCceeeee---ecceEEEEeecCCCCCCCceeeEEEEEE
Q psy535 211 IEGL-RRVDFGYYECVVSNEVATIVQA-AQLVV-EGTQPHAPYNITGVA---TEFSVTLEWLPGYSGGPDLKQNYVIWYR 284 (460)
Q Consensus 211 i~~~-~~~~~g~y~C~a~n~~g~~~~~-~~l~v-~~~~p~~p~~~~~~~---~~~~~~l~w~~~~~~~~~~~~~~~~~~~ 284 (460)
|.++ .....+.|+|.|.|..|..... ..+.. ...+|.+|..+.... ...++.|+|.++...+. ++.+|.+.|+
T Consensus 162 i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~-~i~~Y~v~y~ 240 (303)
T 1i1r_A 162 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYR 240 (303)
T ss_dssp CSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGT-SCEEEEEEEE
T ss_pred ECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCc-ccEEEEEEEE
Confidence 8888 7888899999999999986532 22211 113577787766532 45799999998766554 3479999999
Q ss_pred ecCCCCeeeeecc--CCCCceEEEccCccCccEEEEEEEEcCCCCCCC---CCcEEEEccCC
Q psy535 285 EQGNKDWLPIPVT--PPGSTQITINRLTPATTYEFQVVGKNELGDGML---SNIVVVKTKGP 341 (460)
Q Consensus 285 ~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~---s~~~~~~~~~~ 341 (460)
..+...|..+... ......+.|.+|.+++.|.|++.|.|..|.|.+ |..+.++|.+.
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e~ 302 (303)
T 1i1r_A 241 TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302 (303)
T ss_dssp ETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCCC
T ss_pred eCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCcC
Confidence 9877778766432 335678999999999999999999999887654 56677776543
No 131
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.88 E-value=3.6e-22 Score=163.29 Aligned_cols=163 Identities=18% Similarity=0.170 Sum_probs=115.9
Q ss_pred eeecceeeEEEEEE---EecCCCCCeEEEeeCCeecCcc---------------ccccEEEee---cCeEEEeecCCCCC
Q psy535 66 QYLPFRLQGVVQCH---IKANPTFQYVTWTKDKRLLEPY---------------QTKDIVVMQ---NGSLLFTRVNQNHQ 124 (460)
Q Consensus 66 ~~~~~g~~~~l~C~---~~~~~~~~~v~W~~~~~~~~~~---------------~~~~~~~~~---~~~l~i~~~~~~d~ 124 (460)
..+.+|++++|.|. +.+.|.+ .|+|+|+|..+... ...++.... ...|.|.+++.+|+
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCSTTS-EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred eEEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 45778999999996 4556665 79999987543210 011111111 23699999999999
Q ss_pred eEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC----cc
Q psy535 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP----KN 200 (460)
Q Consensus 125 G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~----~~ 200 (460)
|.|+|.|.|..|... ..+.|.|..||.+...+... .+..|+.++|.|.+ .|.|.|.+.|+++++.... ..
T Consensus 82 G~Y~C~a~n~~g~~~--~~~~l~V~~p~~~~~~~~~~-~v~~g~~~~l~C~~---~G~P~P~v~W~~~~~~~~~~~~~~~ 155 (203)
T 4fa8_A 82 GNYLCRMKLGETEVT--KQEHLSVVKPLTLSVHSERS-QFPDFSVLTVTCTV---NAFPHPHVQWLMPEGVEPAPTAANG 155 (203)
T ss_dssp EEEEEEEEETTEEEE--EEEEEEEEEEEEEEEEEEEC-CSSCSCCEEEEEEE---EEESCCEEEECCC------------
T ss_pred eEEEEEEEcCCCcEE--EEEEEEecCCceeeecceeE-EEcCCCEEEEEEEc---CCCCCCEEEEEECCeeecCcccccc
Confidence 999999999877654 45566666788877776665 68899999999999 7999999999986654432 22
Q ss_pred cEEEe-cceE---EEccccceeceEEEEEEecccceeee
Q psy535 201 RVKIV-GGNI---TIEGLRRVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 201 ~~~~~-~~~l---~i~~~~~~~~g~y~C~a~n~~g~~~~ 235 (460)
++... ++++ .+.++...|.|.|+|.|.|..|+...
T Consensus 156 r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 156 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred eEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 33332 4444 44688999999999999999998764
No 132
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.88 E-value=1e-22 Score=180.98 Aligned_cols=204 Identities=13% Similarity=0.161 Sum_probs=133.0
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE---ecCCee-EEcceeeeecceeeEEEEEEEecCCCCC---eEEE
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---EFPAKV-TFTPTVQYLPFRLQGVVQCHIKANPTFQ---YVTW 91 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~---~v~W 91 (460)
.|.|.++..+|+|.|+|.|.|..+.. ...+.+.+ ..+|.+ ...|....+.+|++++|.|.+.+.++.+ .|+|
T Consensus 73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W 151 (323)
T 2wqr_A 73 ELTLSQKHWLSDRTYTCQVTYQGHTF-EDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTW 151 (323)
T ss_dssp EEEEEHHHHHTTCCEEEEEEETTEEE-EEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEE
T ss_pred EEEEcHHHcCCCCcEEEEEEeCCCCc-ceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEE
Confidence 57788888889999999999976542 22221111 112333 3445555577899999999998865433 7999
Q ss_pred eeCC-eecCccc-------cccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE----eeCCCceeeCCC
Q psy535 92 TKDK-RLLEPYQ-------TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL----VRKPPAFTIKPE 159 (460)
Q Consensus 92 ~~~~-~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~----v~~~p~~~~~~~ 159 (460)
++++ ..+.... ...+ ...+.|.|.++..+|+|.|+|.|.|..+.... .+.|. +..+|.+.+.+.
T Consensus 152 ~k~~g~~~~~~~~~~~~~~~g~~--~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~~ 227 (323)
T 2wqr_A 152 SRASGKPVNHSTRKEEKQRNGTL--TVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFAT 227 (323)
T ss_dssp EETTCCCCCCCCCEEEECTTSCE--EEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCSCCBCCEEEEEEC
T ss_pred EECCCcccccccCCCccCCCCCE--EEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCCCCCCCEEEEeCC
Confidence 9965 4432110 0111 12346999999999999999999987643322 33332 235676655433
Q ss_pred cccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCcccEEE------------ecceEEEccccceeceEEEEE
Q psy535 160 AMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKNRVKI------------VGGNITIEGLRRVDFGYYECV 225 (460)
Q Consensus 160 ~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~~~~~------------~~~~l~i~~~~~~~~g~y~C~ 225 (460)
.. ....|+.++|.|.+ .+ .|.+ .+.|+++ +..+....... ..+.|.|..+...|.|.|+|.
T Consensus 228 ~~-~~~~g~~~~l~C~~---~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~ 302 (323)
T 2wqr_A 228 PE-WPGSRDKRTLACLI---QNFMPEDISVQWLHN-EVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICR 302 (323)
T ss_dssp CC-CTTCTTEEEEEEEE---EEEBSSCCEEEEEET-TEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEE
T ss_pred Ch-HHhcCCcEEEEEEe---eeeeCCCcEEEEEEC-CEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEE
Confidence 32 12339999999998 45 4443 8999994 44443332211 123588888899999999999
Q ss_pred Eecccce
Q psy535 226 VSNEVAT 232 (460)
Q Consensus 226 a~n~~g~ 232 (460)
|.|..+.
T Consensus 303 a~n~~~~ 309 (323)
T 2wqr_A 303 AVHEAAS 309 (323)
T ss_dssp EECTTST
T ss_pred EEeCCCC
Confidence 9998765
No 133
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.88 E-value=4.3e-21 Score=159.58 Aligned_cols=167 Identities=13% Similarity=0.195 Sum_probs=125.0
Q ss_pred ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
.++.+.|.|.+.+.++.+.++|+|+|..+... .++.....+ .|.|.++..+|+|.|+|.+.|..+... ..+.|
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~--~~~~l 91 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ--KTVDL 91 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCCC--SSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEE--EEEEE
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccCC--CeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceE--EEEEE
Confidence 46678999999887655689999999998743 333333332 499999999999999999999776643 44555
Q ss_pred EeeC--------------------CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec
Q psy535 147 LVRK--------------------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG 206 (460)
Q Consensus 147 ~v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 206 (460)
.+.. .|.+.........+..|+.+.|.|.+ .+.|.|.+.|++++.......+.....
T Consensus 92 ~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~ 168 (212)
T 2r15_A 92 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALAQTDHCNLKF 168 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE---ECSSCCEEEEEETTEEECCCSSEEEEE
T ss_pred EEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE---cCCCCceEEEEECCeECccCCCEEEEE
Confidence 4431 23333332222367899999999999 789999999999655444444554443
Q ss_pred c-----eEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 207 G-----NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 207 ~-----~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
. .|.|.++...|.|.|+|.|.|..|.......|.|..
T Consensus 169 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 169 EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 2 799999999999999999999999988888887763
No 134
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=158.97 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=119.9
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+|.+...|.. .+.+|++++|.|.+.+ +. +.+.|+|+|... ...++.|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~-~~~~W~k~g~~~---------~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 74 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GV-DLYRLEKLSSSR---------YQDQAVLFIPAMKRSLAGRYRCSYQNG 74 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECST-TC-SEEEEEETTTCC---------EESSSEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeCCC-CC-CEEEEEECCccc---------cCcccEEEECcCChhhCceEEEEEEcC
Confidence 46677777764 7889999999999877 44 479999998751 234568999999999999999999998
Q ss_pred CCCcceeeEEEEEee---CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEE
Q psy535 135 HGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITI 211 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i 211 (460)
.|....+..+.|.|. .+|.+...+. . .+..|+.++|.|.+ .+. .+.+.|++++...............|.|
T Consensus 75 ~g~~~~s~~~~l~V~~~~~~p~i~~~p~-~-~v~~G~~v~l~C~~---~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~i 148 (184)
T 2gi7_A 75 SLWSLPSDQLELVATGVFAKPSLSAQPG-P-AVSSGGDVTLQCQT---RYG-FDQFALYKEGDPAPYKNPERWYRASFPI 148 (184)
T ss_dssp TEEBCCCCCEEEEEESSSCCCEEEEECC-C-SSCCTTCEEEEEEC---SSC-CCEEEEEECCCCTTSCCCCEEEEESSSE
T ss_pred CCccCCCCCEEEEecCcCCCCEEEeCCC-c-eecCCCcEEEEEEc---CCC-CcEEEEEECCCcCcceecCCCceEEEEE
Confidence 764444555666664 3566666663 2 57799999999997 444 4699999965544332223334567899
Q ss_pred ccccceeceEEEEEEecccc
Q psy535 212 EGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 212 ~~~~~~~~g~y~C~a~n~~g 231 (460)
.++...|.|.|+|.|.|..+
T Consensus 149 ~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 149 ITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp EEETTCCSEEEEEEEECTTS
T ss_pred ccCCccCCeEEEEEEEeCCC
Confidence 99999999999999999754
No 135
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.88 E-value=2.6e-21 Score=163.28 Aligned_cols=190 Identities=24% Similarity=0.335 Sum_probs=134.4
Q ss_pred cCCeeEEcc----eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccccc--EEEeecCeEEEeecCCCCCeEEE
Q psy535 55 FPAKVTFTP----TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYT 128 (460)
Q Consensus 55 ~~p~~~~~~----~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~ 128 (460)
.+|.|...+ ....+.+|+++.|.|.+.+.|.+ .+.|++++..+....... ........|.|.++..+|+|.|+
T Consensus 14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (231)
T 3ojm_B 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92 (231)
T ss_dssp EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred cCCccccccccCceeEEEccCCCEEEEEecccCCCC-eEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence 355665454 67788899999999999998766 799999999886432221 23334457999999999999999
Q ss_pred EEEEcCCCCcceeeEEEEEeeC--CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEc----CCCccCCcc--
Q psy535 129 CTPYNAHGTQGSSGQMEVLVRK--PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR----RDGVALPKN-- 200 (460)
Q Consensus 129 C~~~~~~g~~~~~~~~~v~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~----~~~~~~~~~-- 200 (460)
|.+.|..+.......+.|.... +|.+.........+..|+.+.|.|.+ .+.|.+.+.|++ ++.......
T Consensus 93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~p~v~W~~~~~~~g~~~~~~~~~ 169 (231)
T 3ojm_B 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKV---YSDAQPHIQWIKHVEKNGSKYGPDGLP 169 (231)
T ss_dssp EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCE---ECSSCCEEEEEEECCBTTBSBCTTSCB
T ss_pred EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEE---ecCCCCEEEEEECCCCCCccccCCCcc
Confidence 9999988776444444443321 22222222222367889999999998 688999999998 332221111
Q ss_pred cEEE---------ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCC
Q psy535 201 RVKI---------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249 (460)
Q Consensus 201 ~~~~---------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p 249 (460)
.... ....|.|.++...|.|.|+|.|.|..|.......|.|.. +|.+|
T Consensus 170 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~p 226 (231)
T 3ojm_B 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP-KQQAP 226 (231)
T ss_dssp CEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-CC---
T ss_pred eEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec-CCCCC
Confidence 1110 124699999999999999999999999998889998875 34444
No 136
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.4e-21 Score=160.03 Aligned_cols=170 Identities=17% Similarity=0.271 Sum_probs=132.9
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
..+.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+... ..+.|.|.++..+|+|.|+|.+.|.
T Consensus 17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~ 87 (218)
T 3k0w_A 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFV-QYQWFKMNKEIPNG--------NTSELIFNAVHVKDAGFYVCRVNNN 87 (218)
T ss_dssp --CCEEECCCCEEEETTSBEEEECEETTTTSS-EEEEEETTEECTTC--------CSSEEEETTCCGGGCEEEEEEEECT
T ss_pred CCCEEEECCCCeEEeCCCcEEEEeeecCCCCC-EEEEEECCEECCCC--------CCCEEEEccCChhhCeEeEEEEEcC
Confidence 35677888988999999999999999887765 89999999987532 3467999999999999999999998
Q ss_pred CCCcceeeEEEEEeeCC---------------CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc
Q psy535 135 HGTQGSSGQMEVLVRKP---------------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK 199 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~ 199 (460)
.|.. .+..+.|.|..+ |.+...+... .+..|+.+.|.|.+ .+.|.+.+.|++++. .+..
T Consensus 88 ~~~~-~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~v~~G~~v~L~C~~---~g~p~~~v~W~~~~~-~~~~ 161 (218)
T 3k0w_A 88 FTFE-FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQ-KLMPGSTLVLQCVA---VGSPIPHYQWFKNEL-PLTH 161 (218)
T ss_dssp TCCE-ECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCE-EECTTCCEEEECEE---EBSSCCEEEEEETTE-ECTT
T ss_pred CCCc-eeeEEEEEEEccCcccccccccccCCCceEEECCCce-eecCCCcEEEEEEe---cccCCCeEEEEECCE-ECCC
Confidence 7654 344455555544 4555566554 67899999999999 688999999999544 3332
Q ss_pred ccEEEecceEEEccccceeceEEEEEEecccce-eeeeeEEEEec
Q psy535 200 NRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT-IVQAAQLVVEG 243 (460)
Q Consensus 200 ~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~-~~~~~~l~v~~ 243 (460)
. ....|.|.++...|.|.|+|.|.|..|. .+..+.|.|..
T Consensus 162 ~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 162 E----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp C----CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred C----CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 2 2357999999999999999999998887 45566676654
No 137
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.87 E-value=2.3e-21 Score=161.82 Aligned_cols=183 Identities=21% Similarity=0.418 Sum_probs=135.3
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccc-ccEEEeecCeE----EEeecCCCCCeEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT-KDIVVMQNGSL----LFTRVNQNHQGRYTC 129 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~l----~i~~~~~~d~G~y~C 129 (460)
.+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+..... .......++.+ .|.++..+|+|.|+|
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 86 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEP-TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCC-EEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCC-eEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence 57888888888899999999999999987765 7999999998864321 12222334444 578899999999999
Q ss_pred EEEcCCCCcc-eeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------Ccc
Q psy535 130 TPYNAHGTQG-SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------PKN 200 (460)
Q Consensus 130 ~~~~~~g~~~-~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------~~~ 200 (460)
.+.|..|... ....+.|.+. +|.+...+... .+..|+.+.|.|.+. .+.|.+.+.|++++.... ...
T Consensus 87 ~~~n~~g~~~~~~~~l~v~~~-~~~~~~~~~~~-~~~~g~~v~l~C~~~--~g~p~~~v~W~~~g~~~~~~~~~~~~~~~ 162 (217)
T 2vr9_A 87 VAKNRVGQAVSRHASLQIAVL-RDDFRVEPKDT-RVAKGETALLECGPP--KGIPEPTLIWIKDGVPLDDLKAMSFGASS 162 (217)
T ss_dssp EEEETTEEEECCCEEEEECEE-CCSCSBCCCCE-EECTTSCEEECCBCC--CEESCCEEEEEETTEEECCCCCC---CCC
T ss_pred EEecCCCccccccceEEEEEe-CCCcEECCCcc-EEcCCCeEEEEEECC--CCCCCCeEEEEECCcCCCcccccccccCC
Confidence 9999877542 2334444332 45555555554 678999999999873 578899999999554332 122
Q ss_pred cEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 201 RVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 201 ~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
+... .++.|.|.++...|.|.|+|.|.|..|....+..+.+.
T Consensus 163 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 163 RVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp SEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence 3332 35689999999999999999999999998777665554
No 138
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.87 E-value=3.1e-21 Score=154.90 Aligned_cols=166 Identities=14% Similarity=0.182 Sum_probs=124.7
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
+|.+...|....+.+|++++|.|.+.+.|.+..+.|++++..+.. ..+.|.|.++..+|+|.|+|.+.|..
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~C~~~n~~ 77 (175)
T 1fnl_A 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRCQTNLST 77 (175)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES---------SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC---------CceEEEEeCCCcccCEEEEEEeeCCc
Confidence 466777787778899999999999999876655899999988752 34679999999999999999998754
Q ss_pred CCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCCcccEEEecceEEEccc
Q psy535 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVALPKNRVKIVGGNITIEGL 214 (460)
Q Consensus 136 g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~ 214 (460)
+ +..+.|.|..++.....+. . .+..|+.++|.|.+ .+.++ +.+.|++++. .+. .......|.|.++
T Consensus 78 ~----s~~~~l~V~~~~~~~~~~~-~-~~~~g~~~~l~C~~---~~~~~~~~~~W~k~g~-~~~---~~~~~~~L~i~~v 144 (175)
T 1fnl_A 78 L----SDPVQLEVHIGWLLLQAPR-W-VFKEEDPIHLRCHS---WKNTALHKVTYLQNGK-DRK---YFHHNSDFHIPKA 144 (175)
T ss_dssp C----CCCEEEEEECSSEEEECSC-S-EEETTCCEEEEEEE---CTTCCCEEEEEEETTE-EEE---EEEECCCEEESSC
T ss_pred c----cccEEEEEeCCCceeeCCC-c-eecCCCCEEEEEEc---CCCCCceEEEEEECCe-Ecc---CCCCCCEEEEccc
Confidence 4 3345555555554443333 2 57789999999998 55544 5999999543 331 2234678999999
Q ss_pred cceeceEEEEEEecccce-eeeeeEEEEec
Q psy535 215 RRVDFGYYECVVSNEVAT-IVQAAQLVVEG 243 (460)
Q Consensus 215 ~~~~~g~y~C~a~n~~g~-~~~~~~l~v~~ 243 (460)
...|.|.|+|.|.|..+. .+..+.|.|.+
T Consensus 145 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 145 TLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp CGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 999999999999997654 45556666653
No 139
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.87 E-value=6.2e-22 Score=162.55 Aligned_cols=168 Identities=13% Similarity=0.208 Sum_probs=118.9
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+|.+...|. ..+.+|++++|.|.+.+.+. .+.|+|+|..+.............+.|.|.++..+|+|.|+|.+.|.
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ--EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 80 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECCTTCC--CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEecCCCc--EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence 3567777776 47889999999999988764 59999999876421111111234568999999999999999999998
Q ss_pred C-CCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE---EE---
Q psy535 135 H-GTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV---KI--- 204 (460)
Q Consensus 135 ~-g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~---~~--- 204 (460)
. |....+..+.|.|.. +|.+...+. . .+..|+.++|.|.+ .+. .+.+.|++++......... ..
T Consensus 81 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~-~v~~G~~v~L~C~~---~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~ 154 (198)
T 1ugn_A 81 TAGRSESSDPLELVVTGAYIKPTLSAQPS-P-VVNSGGNVTLQCDS---QVA-FDGFILCKEGEDEHPQCLNSQPHARGS 154 (198)
T ss_dssp TTEECCCCCCEEEEEECSSCCCEEEEESC-S-EEETTCCEEEEEEC---SSC-CSEEEEEEC------CEEEC------C
T ss_pred CCCcccCCccEEEEEcccccCCccccCCc-c-ccCCCCcEEEEEec---CCC-CcEEEEEECCCccCCccccccccCCCc
Confidence 7 533345566666665 455544443 2 57789999999998 566 7899999965543322111 11
Q ss_pred ecceEEEccccceeceEEEEEEecccc
Q psy535 205 VGGNITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 205 ~~~~l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
....|.|.++...|.|.|+|.|.|..+
T Consensus 155 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 155 SRAIFSVGPVSPSRRWWYRCYAYDSNS 181 (198)
T ss_dssp CEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred ceeEEEecccCcccCeEEEEEEEeCCC
Confidence 136799999999999999999999865
No 140
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.87 E-value=9e-22 Score=161.28 Aligned_cols=167 Identities=13% Similarity=0.202 Sum_probs=121.1
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
+|.+...|.. .+.+|++++|.|.+.+ +. +.+.|+|++..+.............+.|.|.+++.+|+|.|+|.|.|..
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 3p2t_A 5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EA-REYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV 81 (196)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TC-CEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEEEccCCC-cCCCCCcEEEEeeCCC-CC-CEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence 4666677766 7889999999999988 44 3799999998775311111111234579999999999999999999988
Q ss_pred CCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc-----EEEecc
Q psy535 136 GTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-----VKIVGG 207 (460)
Q Consensus 136 g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-----~~~~~~ 207 (460)
|....+..+.|.|.. +|.+...+.. .+..|+.++|.|.+ .+ +.+.+.|++++........ .....+
T Consensus 82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~--~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~ 155 (196)
T 3p2t_A 82 GWSQPSDPLELVMTGAYSKPTLSALPSP--LVTSGKSVTLLCQS---RS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQA 155 (196)
T ss_dssp EEBCCCCCEEEEEECSSCCCEEEEESCS--EECTTCCEEEEEEE---EE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEE
T ss_pred cccCCCccEEEEecCCCCCCEEEeCCcc--eecCCCeEEEEEec---CC-CCCEEEEEeCCCcccceeecccccccCcce
Confidence 744455566676653 4555555543 56899999999998 44 4568999995543322211 112356
Q ss_pred eEEEccccceeceEEEEEEecccc
Q psy535 208 NITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 208 ~l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
.|.|.++...|+|.|+|.|.|..+
T Consensus 156 ~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 156 EFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EEEECSCCGGGCEEEEEEEECGGG
T ss_pred EEEeCCCcccCCCeEEEEEEcCCC
Confidence 799999999999999999999876
No 141
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.87 E-value=3.3e-21 Score=160.29 Aligned_cols=184 Identities=26% Similarity=0.454 Sum_probs=135.8
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccc---ccEEEeecCeEE-----EeecCCCCCeE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT---KDIVVMQNGSLL-----FTRVNQNHQGR 126 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~l~-----i~~~~~~d~G~ 126 (460)
.||.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+..... .......++.+. |.++..+|+|.
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 86 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCC-EEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcCCCCCC-EEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence 46778888888899999999999999988766 8999999988754221 123333444444 44568999999
Q ss_pred EEEEEEcCCCCcceeeEEEEEeeC-CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE
Q psy535 127 YTCTPYNAHGTQGSSGQMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI 204 (460)
Q Consensus 127 y~C~~~~~~g~~~~~~~~~v~v~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~ 204 (460)
|+|.+.|..|.. .+..+.|.|.. ++.+...+... .+..|+.++|.|.+. .+.|.+.+.|++++..... ..+...
T Consensus 87 Y~C~~~n~~g~~-~~~~~~l~V~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~--~~~p~~~v~W~~~~~~l~~~~~~~~~ 162 (212)
T 2v9r_A 87 YVCVARNYLGEA-VSHDASLEVAILRDDFRQNPSDV-MVAVGEPAVMECQPP--RGHPEPTISWKKDGSPLDDKDERITI 162 (212)
T ss_dssp EEEEEEETTEEE-ECCCEEEEECEECSSCSBCCCCE-EEETTSCEEEECBCC--CEESCCEEEEEETTEEECTTSTTEEE
T ss_pred EEEEEECCCCce-eecceEEEEEeccccceeCCCce-EecCCCcEEEEEecC--CCCCCCEEEEEECCccCCCCcceEEc
Confidence 999999987754 22233444433 44444445444 678999999999973 5778999999995543332 345566
Q ss_pred ecceEEEccccceeceEEEEEEecccceeeee-eEEEEec
Q psy535 205 VGGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEG 243 (460)
Q Consensus 205 ~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~~ 243 (460)
.++.|.|.++...|.|.|+|.|.|..|..... +.|.|..
T Consensus 163 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~ 202 (212)
T 2v9r_A 163 RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202 (212)
T ss_dssp ETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred cCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence 77899999999999999999999999986554 6777765
No 142
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.87 E-value=6.7e-22 Score=160.71 Aligned_cols=166 Identities=14% Similarity=0.201 Sum_probs=117.3
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
+|.+...|.. .+.+|++++|.|.+.+. +..+.|+|+|..+............++.|.|.+++.+|+|.|+|.+.|..
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~--~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 80 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNYG--AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 80 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTT--CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCCC--CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence 4666667765 78899999999998754 34799999998764211111111234579999999999999999998875
Q ss_pred CCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEc
Q psy535 136 GTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIE 212 (460)
Q Consensus 136 g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~ 212 (460)
+....+..+.|.|.. +|.+...+.. .+..|+.++|.|.+ .+ +.+.+.|++++.............+.|.|.
T Consensus 81 ~~~~~s~~~~l~V~~~~~~p~i~~~p~~--~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~ 154 (188)
T 1oll_A 81 LWSEPSNLLDLVVTEMYDTPTLSVHPGP--EVISGEKVTFYCRL---DT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLG 154 (188)
T ss_dssp EECCCCCCEEEEEESCSCCCEEEEESCS--EEETTCEEEEEEEC---SS-SCSEEEEEEESSSCEEEEEECSSEEEEEEE
T ss_pred CCCCCCCceEEEecccCCCCeEEECCCC--ccccCCEEEEEEEc---CC-CCCEEEEEECCccccccccCCCceeEEEEC
Confidence 544445566666653 5666655532 57899999999997 44 457899999554332211111134579999
Q ss_pred cccceeceEEEEEEeccc
Q psy535 213 GLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 213 ~~~~~~~g~y~C~a~n~~ 230 (460)
++...|+|.|+|.|.|..
T Consensus 155 ~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 155 PVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp ECCGGGCEEEEEECEEET
T ss_pred CCCcCCCcEEEEEEEcCC
Confidence 999999999999999864
No 143
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Probab=99.87 E-value=7.2e-19 Score=159.29 Aligned_cols=301 Identities=17% Similarity=0.178 Sum_probs=192.9
Q ss_pred eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCccc-ccCCCCeEEEEeeeeccCCCCCCeeEEEc
Q psy535 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMY-QRKVGESVDMHCEAQEAEGTQKPTITWQR 191 (460)
Q Consensus 113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~p~~~~~W~~ 191 (460)
.+.|.++.....-.|+..|.|..|..... ...+...+ . .|.... .......+.|.+............+.|..
T Consensus 59 ~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~---~~~~~~~~--~-~p~~l~~~~~~~~si~l~W~~p~~~~~~~Y~v~~~~ 132 (368)
T 1fnf_A 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPI---SDTIIPAV--P-PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSP 132 (368)
T ss_dssp EEECCCCCTTSCEEEEEEEEETTEECCCE---EEEECCCC--C-CCEEEEEESCCSSCEEEEEECCTTCCCSEEEEEEEE
T ss_pred EEEECCCCCCCEEEEEEEEEcCCCccCce---eeeecCCC--c-CCceeEEEEcCCCeEEEEeeCCCCCCCcEEEEEEEE
Confidence 57777888777777788888877643322 22221111 0 122221 12235567777765211011112555654
Q ss_pred CCCccCCcccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecC
Q psy535 192 RDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPG 268 (460)
Q Consensus 192 ~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~ 268 (460)
.++.. ....... ....+.+.++.....+.|++.|.|..|..... ..... .+|.+|..+.. .....++.|+|.++
T Consensus 133 ~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~-~~~~~P~~l~~~~~~~~sv~l~W~~p 209 (368)
T 1fnf_A 133 VKNEE-DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-RGRQK-TGLDSPTGIDFSDITANSFTVHWIAP 209 (368)
T ss_dssp TTCTT-CCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEE-CCCCCCEEEEEESCCSSEEEEEEECC
T ss_pred CCCCC-ccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCe-Eeeec-CCCCCCCccEEEEccCCEEEEEEeCC
Confidence 22211 1111112 23468888999988899999999988764332 22222 35566766654 34667999999975
Q ss_pred CCCCCCceeeEEEEEEecCCC-CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCc
Q psy535 269 YSGGPDLKQNYVIWYREQGNK-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR 347 (460)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~ 347 (460)
. . .+.+|.+.++..... .+..... ......+.+.+|.+++.|.|++.|.|..|.+..+.. . ...+|.+|.
T Consensus 210 ~---~-~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~-~---~~t~p~~P~ 280 (368)
T 1fnf_A 210 R---A-TITGYRIRHHPEHFSGRPREDRV-PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG-Q---QSTVSDVPR 280 (368)
T ss_dssp S---S-CCSEEEEEEECSCCSSCCEEEEE-ETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEE-E---EECCCCSCE
T ss_pred C---C-CcCEEEEEEecCCCCCCccEEEe-CCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccc-c---ccCCCCCCC
Confidence 3 2 347899998876542 3332222 235678999999999999999999999997755432 2 224578899
Q ss_pred ceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEE
Q psy535 348 NVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQIT 426 (460)
Q Consensus 348 ~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (460)
++.+.... +++.|+|++|.. ++.+|.|+|+..+... ...+.. .....+.+.
T Consensus 281 ~l~~~~~~~~sv~l~W~~p~~---~i~~Y~v~~~~~~~~~----------------------~~~~~~---~~~~~~~~~ 332 (368)
T 1fnf_A 281 DLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNS----------------------PVQEFT---VPGSKSTAT 332 (368)
T ss_dssp EEEEEEEETTEEEEEEECCSS---CCSEEEEEEEETTCCS----------------------CCEEEE---EETTCCEEE
T ss_pred eeEEEecCCCEEEEEeeCCCC---ccceEEEEEEECCCCC----------------------ccEEEE---cCCCeeEEE
Confidence 99988766 699999999854 5899999999764300 000111 124568999
Q ss_pred ECCCCcCceEEEEEEEeecCCCCCCCc---eeEeec
Q psy535 427 INRLTPATTYEFQVVGKNELGDGMLSN---IVVVKT 459 (460)
Q Consensus 427 i~~L~p~~~Y~~~v~a~n~~G~s~~s~---~~~~~T 459 (460)
+.+|.|++.|.|+|+|.|..|.|++|. .+.|+|
T Consensus 333 ~~~L~p~t~Y~~~V~A~~~~G~g~~s~~~~~i~~~T 368 (368)
T 1fnf_A 333 ISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT 368 (368)
T ss_dssp ECSCCTTCCEEEEEEEECCCSSSCCBCCCEEEEECC
T ss_pred ecCCCCCCEEEEEEEEeCCCCcCcccCceeeeeeeC
Confidence 999999999999999999999999886 344544
No 144
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.87 E-value=9.5e-22 Score=162.08 Aligned_cols=178 Identities=19% Similarity=0.256 Sum_probs=132.8
Q ss_pred EcceeeeecceeeEEEEEE-EecCCCCCeEEEeeCCeecCcccccc-EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 61 FTPTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~-~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
..+....+.+|+++.|.|. +.+.|..+.+.|++++..+......+ .....++.|.|.++..+|+|.|+|.+.+..+..
T Consensus 13 ~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~ 92 (201)
T 3s97_C 13 EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITK 92 (201)
T ss_dssp SCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred CCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCc
Confidence 3456678899999999999 77877624899999998775322233 333456689999999999999999999866544
Q ss_pred ce-eeEEEEEee-------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEE
Q psy535 139 GS-SGQMEVLVR-------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210 (460)
Q Consensus 139 ~~-~~~~~v~v~-------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~ 210 (460)
.. ...+.+.+. .+|.+...+... .+..|+.++|.|.+ .+.|.+.+.|++++.......+....+..|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~ 168 (201)
T 3s97_C 93 SVFSKFIPLIPIPERTTKPYPADIVVQFKDV-YALMGQNVTLECFA---LGNPVPDIRWRKVLEPMPSTAEISTSGAVLK 168 (201)
T ss_dssp EEECCCEEEEEECCSSCCCEEEEEEEECCCE-EEETTCCEEEEEEE---EEESCCEEEEEETTBCCCTTCEEETTTTEEE
T ss_pred chhhcccceeeccccccCCCCCceEecCCce-EEecCCcEEEEEEc---cCCCCCceEEEeCCCcCCCceeecCCCCEEE
Confidence 32 223333332 244455544433 67889999999998 6889999999996554333334444567899
Q ss_pred EccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 211 IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 211 i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
|.++...|.|.|+|.|.|..|.......|.|.
T Consensus 169 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 169 IFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 99999999999999999999999888888775
No 145
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.87 E-value=1.4e-21 Score=157.22 Aligned_cols=169 Identities=16% Similarity=0.153 Sum_probs=124.3
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
..+|.+...|....+.+|++++|.|.+.+.+.+..+.|++++..+.. .++.|.|.+++.+|+|.|+|.+.|
T Consensus 2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~~ 72 (176)
T 1f2q_A 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQ 72 (176)
T ss_dssp --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTT
T ss_pred CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC---------CceEEEEeccceecCEEEEEEcCC
Confidence 34677778888888999999999999988876556999999988752 256799999999999999999987
Q ss_pred CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEcc
Q psy535 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEG 213 (460)
Q Consensus 134 ~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~ 213 (460)
..+. ..+.|.|..++.....+. . .+..|+.+.|.|.+. .+.|.+.+.|+++ +..+.. ...+..|.|.+
T Consensus 73 ~~~s----~~~~l~V~~~~~~~~~~~-~-~~~~g~~~~l~C~~~--~~~p~~~~~W~~~-g~~~~~---~~~~~~L~i~~ 140 (176)
T 1f2q_A 73 VNES----EPVYLEVFSDWLLLQASA-E-VVMEGQPLFLRCHGW--RNWDVYKVIYYKD-GEALKY---WYENHNISITN 140 (176)
T ss_dssp SSCC----CCEEEEEECSSEEEEESC-S-EEETTSCEEEEEEEG--GGCCEEEEEEEET-TEECCS---CCCSSEEEESS
T ss_pred cccc----ccEEEEEeCcceeecCCc-c-eeeCCCCEEEEEEec--CCCCceEEEEEEC-CEEEee---ecCCCeEEECC
Confidence 5543 234455554444433333 2 577999999999983 4667789999994 444321 12356899999
Q ss_pred ccceeceEEEEEEecccce-eeeeeEEEEec
Q psy535 214 LRRVDFGYYECVVSNEVAT-IVQAAQLVVEG 243 (460)
Q Consensus 214 ~~~~~~g~y~C~a~n~~g~-~~~~~~l~v~~ 243 (460)
+...|.|.|+|.|.|..+. .+..+.|.|..
T Consensus 141 v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 171 (176)
T 1f2q_A 141 ATVEDSGTYYCTGKVWQLDYESEPLNITVIK 171 (176)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CCcccCEEEEEEEEeCCcceEecCEEEEEec
Confidence 9999999999999996443 45556777765
No 146
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.87 E-value=5.8e-22 Score=164.50 Aligned_cols=174 Identities=18% Similarity=0.300 Sum_probs=131.7
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeec----------CccccccEEEeecCeEEEeecCCCCCe
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL----------EPYQTKDIVVMQNGSLLFTRVNQNHQG 125 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G 125 (460)
++.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+ ......++.. ..+.|.|.++..+|+|
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~~~~~d~G 81 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTF-LPTGITFKSVTREDTG 81 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSE-EEEEEEEETTEEEESEETTEECTTTTTTCEE-ETTEEECSCCCTTSCS
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCc-EEEEEEcCCceeEEEEecCccCccccCceEe-eccEEEEeeCCHHHCc
Confidence 3445566777788899999999999987655 79999987652 1112233333 3478999999999999
Q ss_pred EEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc----
Q psy535 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR---- 201 (460)
Q Consensus 126 ~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~---- 201 (460)
.|+|.+.+..|....+..+.|.|..+|.+...+... .+..|+.+.|.|.+. .+.|.+.+.|++++........
T Consensus 82 ~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~~--~~~p~~~v~W~~~~~~~~~~~~~~~~ 158 (209)
T 1nbq_A 82 TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPS-SATIGNRAVLTCSEQ--DGSPPSEYTWFKDGIVMPTNPKSTRA 158 (209)
T ss_dssp EEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBS-EEETTSCEEECCCCC--SCBSCCEEEEEETTCCCCSCSSSSSS
T ss_pred EEEEEEecCCCCccceEEEEEEEecCCcCCCccccc-ceecCCEEEEEEeCC--CCCCCceeEEEECCeeCCCcccccee
Confidence 999999998775555667777788888776655544 578899999999963 6889999999996543332211
Q ss_pred -----EEE--ecceEEEccccceeceEEEEEEecccceee
Q psy535 202 -----VKI--VGGNITIEGLRRVDFGYYECVVSNEVATIV 234 (460)
Q Consensus 202 -----~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 234 (460)
... ....|.|.++...|.|.|+|.|.|..|...
T Consensus 159 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 198 (209)
T 1nbq_A 159 FSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM 198 (209)
T ss_dssp CTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred eeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccc
Confidence 111 345799999999999999999999999873
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.87 E-value=2.7e-23 Score=186.33 Aligned_cols=198 Identities=11% Similarity=0.097 Sum_probs=148.6
Q ss_pred CCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEE
Q psy535 29 DSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV 108 (460)
Q Consensus 29 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 108 (460)
|.|.|+|.+.+.. ..+.+.+-.+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... .....
T Consensus 136 ~~~~~~C~~~~~l-----~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p-~i~W~~~~~~~~~~~-~~~~~ 208 (347)
T 2ifg_A 136 PEQKLQCHGQGPL-----AHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATV-MKSGG 208 (347)
T ss_dssp GGGCCCCSSSSCS-----SCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCC-CCCEEESCCCSSEEE-CCCCC
T ss_pred cccCCCCCCChHH-----hcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCC-EEEEEcCCceeeccc-cccee
Confidence 5789999887732 2222333457888888888889999999999999998876 799999987654321 11122
Q ss_pred eecCeEEEeecCCCCCe-EEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCee
Q psy535 109 MQNGSLLFTRVNQNHQG-RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187 (460)
Q Consensus 109 ~~~~~l~i~~~~~~d~G-~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~ 187 (460)
..++.|.|.++..+|+| .|+|.|.|..|... ..+.|.|..+|.+ ....+..|+.++|.|.+ .|.|.|.+
T Consensus 209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~--~~~~l~V~~~P~i-----~~~~~~~g~~v~l~C~~---~g~P~p~i 278 (347)
T 2ifg_A 209 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAE--VSVQVNVSFPASV-----QLHTAVEMHHWCIPFSV---DGQPAPSL 278 (347)
T ss_dssp SSEEEEEEESCCSTTTTCCEEECCEETTEECC--EEECCCCBEEEEE-----EECCCEESSSEEEEEEE---EEESCCEE
T ss_pred cccceEEEeeCChHHCCCeEEEEEEcCCCCEE--EEEEEEEcCCCee-----eeccCccCceEEEEEEe---eecCCCcE
Confidence 34567999999999999 99999999887764 4555666667765 11134568999999999 68899999
Q ss_pred EEEcCCCccCCcccEEE-----------ecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 188 TWQRRDGVALPKNRVKI-----------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 188 ~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
.|++++........... ..+.|.|.++...|+|.|+|.|.|..|....++.+.|..
T Consensus 279 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 279 RWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp EEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred EEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence 99985443332222221 144699999999999999999999999998888887764
No 148
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.87 E-value=7.8e-22 Score=183.43 Aligned_cols=206 Identities=13% Similarity=0.186 Sum_probs=137.2
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE------------------ecCCeeE-Ecceeee-ecceeeEEEE
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV------------------EFPAKVT-FTPTVQY-LPFRLQGVVQ 77 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~-~~~~~~~-~~~g~~~~l~ 77 (460)
+.|.|.++..+| |.|+|.|.|..+.. .....+.+ ..+|.+. ..|.... +.+|++++|.
T Consensus 184 s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~ 261 (444)
T 1igt_B 184 SSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVT 261 (444)
T ss_dssp EEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEE
T ss_pred EEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEE
Confidence 469999999999 99999999988763 22233322 1245543 3333333 4789999999
Q ss_pred EEEecCC---CCCeEEEeeCCeecCccccccEEEe------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE--
Q psy535 78 CHIKANP---TFQYVTWTKDKRLLEPYQTKDIVVM------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV-- 146 (460)
Q Consensus 78 C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v-- 146 (460)
|.+.+.+ +.+.|+|+|++..+........... ..+.|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus 262 C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~ 341 (444)
T 1igt_B 262 CVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPK 341 (444)
T ss_dssp EEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCC
T ss_pred EEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccC
Confidence 9999874 4458999999988753222211111 2346999999999999999999998887644444443
Q ss_pred EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCccc-EE---Eecc------eEEEccc
Q psy535 147 LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKNR-VK---IVGG------NITIEGL 214 (460)
Q Consensus 147 ~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~~-~~---~~~~------~l~i~~~ 214 (460)
.+..+|.+.+.+.....+..| .++|.|.+ .| .|.+ .+.|++++. .+.... .. ..++ .|.+...
T Consensus 342 ~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~---~g~~P~~~~v~W~k~g~-~l~~~~~~~~~~~~~g~~~~~s~l~i~~~ 416 (444)
T 1igt_B 342 GSVRAPQVYVLPPPEEEMTKK-QVTLTCMV---TDFMPEDIYVEWTNNGK-TELNYKNTEPVLDSDGSYFMYSKLRVEKK 416 (444)
T ss_dssp CCCBCCEEEEECCCGGGTTSS-EEEEEEEE---EEEBSSCCEEEEEETTE-ECSSEEECCCEECTTSCEEEEEEEEEEHH
T ss_pred CCCCCCEEEEeCCChHHccCC-eEEEEEEE---EeeeCCCCEEEEEECCE-EccccccccceeCCCCCEEEEEEEEEChH
Confidence 456788776655443234444 59999999 55 5555 899999544 332211 10 1122 2445555
Q ss_pred cceeceEEEEEEeccc
Q psy535 215 RRVDFGYYECVVSNEV 230 (460)
Q Consensus 215 ~~~~~g~y~C~a~n~~ 230 (460)
...|.|.|+|.|.|..
T Consensus 417 ~~~d~g~YtC~a~n~~ 432 (444)
T 1igt_B 417 NWVERNSYSCSVVHEG 432 (444)
T ss_dssp HHHTCCCEEEEEECTT
T ss_pred HhcCCCeEEEEEECCC
Confidence 5566899999999864
No 149
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.87 E-value=2.7e-21 Score=161.08 Aligned_cols=177 Identities=17% Similarity=0.261 Sum_probs=131.3
Q ss_pred EcceeeeecceeeEEEEEEEecCCC---CCeEEEee----------------CCeecCc---cccccEEEee------cC
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKANPT---FQYVTWTK----------------DKRLLEP---YQTKDIVVMQ------NG 112 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~----------------~~~~~~~---~~~~~~~~~~------~~ 112 (460)
..+....+.+|++++|.|.+.+.+. .+.+.|++ ++..+.. ....++.... +.
T Consensus 5 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 84 (214)
T 3jz7_A 5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDA 84 (214)
T ss_dssp -CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBC
T ss_pred cCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcc
Confidence 3455677889999999999988763 24799998 3333321 1234554443 45
Q ss_pred eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcC
Q psy535 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192 (460)
Q Consensus 113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~ 192 (460)
+|.|.+++.+|+|.|+|.+.+..|.. +..+.|.|..+|.+...+... .+..|+.+.|.|.+. .+.|.+.+.|+++
T Consensus 85 ~L~i~~v~~~D~G~Y~C~~~~~~~~~--~~~~~l~V~~~p~~~~~~~~~-~~~~g~~v~l~C~~~--~g~p~~~v~W~~~ 159 (214)
T 3jz7_A 85 SINVTNLQLSDIGTYQCKVKKAPGVA--NKKFLLTVLVKPSGTRCFVDG-SEEIGNDFKLKCEPK--EGSLPLQFEWQKL 159 (214)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEECCCBSCEEEEES-CCBTTCCEEEEEECS--BCCSSCEEEEEEC
T ss_pred cEEEccCChhhCeEEEEEEEeCCCcc--ccEEEEEEEcCCCCceeeeec-ceecCCcEEEEecCC--CCCCCCEEEEEEC
Confidence 79999999999999999999987754 556667777787765544443 477899999999984 6889999999985
Q ss_pred CCcc-CCc-ccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 193 DGVA-LPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 193 ~~~~-~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
++.. +.. ......++.|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 160 SDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211 (214)
T ss_dssp STTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred CCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence 4322 221 1222235689999999999999999999999999888888776
No 150
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.86 E-value=8.1e-21 Score=157.72 Aligned_cols=174 Identities=19% Similarity=0.216 Sum_probs=123.3
Q ss_pred cceeeeecce--eeEEEEEEEecCCCCCeEEEeeC---CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 62 TPTVQYLPFR--LQGVVQCHIKANPTFQYVTWTKD---KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 62 ~~~~~~~~~g--~~~~l~C~~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
.|....+.+| ++++|.|.+.+ |.+ .++|+++ +..+.. ..++.....+.|.|.+++.+|+|.|+|.|.|..+
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~-~v~w~~~~~~g~~~~~--~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~ 88 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI-SNL-NVSLCARYPEKRFVPD--GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE 88 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS-TTC-CEEEEEETTTEEECCC--SSSCEEETTTEEEEEGGGTTTCSEEEEEEC----
T ss_pred CceEEEEecCCCccEEEeeccCC-CCc-EEEEEhhcCCCccccC--CCcccccCCccEEEccCChhcCceEEEEEEECCe
Confidence 4577888999 99999999976 554 7999884 555542 2344444566899999999999999999988543
Q ss_pred CcceeeEEEEEeeC--CCceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEcCCCccCCccc-E---------
Q psy535 137 TQGSSGQMEVLVRK--PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQRRDGVALPKNR-V--------- 202 (460)
Q Consensus 137 ~~~~~~~~~v~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~~~~~~~~~~~-~--------- 202 (460)
. ..+..+.|.|.. +|.+...+.....+..|+.++|.|.+ .+.| .+.+.|++++........ .
T Consensus 89 ~-~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~---~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~ 164 (213)
T 2x1w_L 89 S-YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA---RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 164 (213)
T ss_dssp C-EECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEE---EECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSC
T ss_pred e-EEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEE---ECCCCCceEEEEEecCCccceEEEeccccccccCc
Confidence 3 344445565543 34455555443367899999999999 5543 457999986554221111 0
Q ss_pred --EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 203 --KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 203 --~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
......|.|.++...|+|.|+|.|.|..|.....+.|.|..
T Consensus 165 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp SCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred cceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence 12234699999999999999999999999998888888875
No 151
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.86 E-value=3.1e-21 Score=157.77 Aligned_cols=145 Identities=29% Similarity=0.488 Sum_probs=119.7
Q ss_pred ccCcccceEEEeeCC-eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535 4 KVGSLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 4 ~~~~~~~r~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
.+...+.|+.+..++ +|.|.+++.+|+|.|+|.+.+..|......+.|.|..+|.+...+....+.+|+++.|.|.+.+
T Consensus 47 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 126 (192)
T 2iep_A 47 LIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMG 126 (192)
T ss_dssp ECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEE
T ss_pred EccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEec
Confidence 344557888887765 6999999999999999999998887556778899998888888888888899999999999999
Q ss_pred CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535 83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
.|.+ .+.|++++..+.. ..++....++.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..||
T Consensus 127 ~p~~-~v~W~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~V~~pp 192 (192)
T 2iep_A 127 NPKP-SVSWIKGDSALRE--NSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA-YSKLVKLEVEVFA 192 (192)
T ss_dssp ESCC-EEEEEETTEECCC--CSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC--
T ss_pred cCCc-eEEEEeCCEEccC--CCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcE-EEEEEEEEEEeCC
Confidence 8776 7999999998863 345666677889999999999999999999998876 3445666666554
No 152
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.86 E-value=6e-21 Score=155.88 Aligned_cols=142 Identities=18% Similarity=0.292 Sum_probs=119.4
Q ss_pred cCcccceEEEeeC----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535 5 VGSLETRVVIKKD----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 5 ~~~~~~r~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
+...+.|+.+..+ ++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+.+|+++.|.|.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~ 124 (191)
T 1epf_A 45 LSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124 (191)
T ss_dssp ECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEE
T ss_pred ccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEE
Confidence 3446678887543 599999999999999999999998655577888899999999888888889999999999999
Q ss_pred ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
.+.|.+ .+.|++++..+......++....++.|.|.++..+|+|.|+|.|.|..+.......+.|.
T Consensus 125 ~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 125 VSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp ECSSCC-EEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred CCCCCC-EEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 998876 799999999987655667777778899999999999999999999988665555555554
No 153
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.85 E-value=1.9e-20 Score=149.71 Aligned_cols=164 Identities=15% Similarity=0.215 Sum_probs=122.8
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
|.+...|....+.+|+++.|.|.+.+.|+...+.|+++|..+... ...+.|.++..+|+|.|+|.+.+...
T Consensus 5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~d~G~Y~C~~~~~~~ 75 (170)
T 3ry4_A 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH---------TQPSYRFKANNNDSGEYTCQTGQTSL 75 (170)
T ss_dssp CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC---------CSSEEEEECCGGGCEEEEEEETTSBC
T ss_pred CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC---------ccceEEEecccccCeEEEEEEeCCCc
Confidence 345566776778899999999999998755589999999988632 34577889999999999999986433
Q ss_pred CcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccc
Q psy535 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRR 216 (460)
Q Consensus 137 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~ 216 (460)
+..+.|.|..++.+...+.. .+..|+.+.|.|.+. .+.|.+.+.|++++. .+. ....+..|.|.++..
T Consensus 76 ----s~~~~l~v~~~~~~~~~~~~--~~~~g~~~~l~C~~~--~~~p~~~~~W~~~g~-~~~---~~~~~~~L~i~~v~~ 143 (170)
T 3ry4_A 76 ----SDPVHLTVLFEWLVLQTPHL--EFQEGETIMLRCHSW--KDKPLVKVTFFQNGK-SQK---FSHLDPTFSIPQANH 143 (170)
T ss_dssp ----CCCEEEEEECCSEEEECSCS--EECTTCCEEEEEEEG--GGCCEEEEEEEETTE-EEE---EESSCCEEEESSCCG
T ss_pred ----eEeEEEEEECCceEecCCCc--eeecCCeEEEEEECC--CCCCCceEEEEECCe-Ecc---ccCCCCeEEEEeccc
Confidence 33466667767655554433 567899999999984 456778999999443 321 112356799999999
Q ss_pred eeceEEEEEEecccce-eeeeeEEEE
Q psy535 217 VDFGYYECVVSNEVAT-IVQAAQLVV 241 (460)
Q Consensus 217 ~~~g~y~C~a~n~~g~-~~~~~~l~v 241 (460)
.|.|.|+|.|.|..|. .+..+.|.|
T Consensus 144 ~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 144 SHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cCCEEEEEEEEeCcCccccccEEEEE
Confidence 9999999999999886 344444444
No 154
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.85 E-value=2.1e-20 Score=159.68 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=121.9
Q ss_pred cceeeeecceeeEEEEEEEec---CCCCCeEEEeeCCeecC----------------------------ccccccEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKA---NPTFQYVTWTKDKRLLE----------------------------PYQTKDIVVMQ 110 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~---~~~~~~v~W~~~~~~~~----------------------------~~~~~~~~~~~ 110 (460)
.+....+.+|++++|.|.+.+ .+.+ .+.|++++.... +....+..+..
T Consensus 8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 86 (250)
T 2fbo_J 8 THTEVEVHAGGTVELPCSYQLANDTQPP-VISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN 86 (250)
T ss_dssp SCSEEEECTTSCEEECCEEEECSCCSCC-EEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred CCCceEEecCCeEEEEEEeEcCCCCCce-EEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence 445677889999999999987 5544 799999875430 11223333332
Q ss_pred --cCeEEEeecCCCCCeEEEEEEEcCCCCcce---eeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCCC
Q psy535 111 --NGSLLFTRVNQNHQGRYTCTPYNAHGTQGS---SGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182 (460)
Q Consensus 111 --~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~---~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 182 (460)
+..|.|.+++.+|+|.|+|.+.+..+.... +..+.|.|..+ |.+...+.....+..|+.+.|.|.+ .+.
T Consensus 87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~---~g~ 163 (250)
T 2fbo_J 87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC---TDC 163 (250)
T ss_dssp TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCE---ESC
T ss_pred CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEe---cCC
Confidence 347999999999999999999988775432 44666777654 4444444433367789999999999 788
Q ss_pred CCCeeEEEcCCCccCCc------------------------ccEEE-ecceEEEccccceeceEEEEEEeccc---ceee
Q psy535 183 QKPTITWQRRDGVALPK------------------------NRVKI-VGGNITIEGLRRVDFGYYECVVSNEV---ATIV 234 (460)
Q Consensus 183 p~~~~~W~~~~~~~~~~------------------------~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~---g~~~ 234 (460)
|.|.+.|++++...... .+... ....|.|.++...|.|.|+|.|.|.. |...
T Consensus 164 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~ 243 (250)
T 2fbo_J 164 ANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243 (250)
T ss_dssp TTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEE
T ss_pred CCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccc
Confidence 88999999954322210 11111 23689999999999999999999954 4444
Q ss_pred eeeEE
Q psy535 235 QAAQL 239 (460)
Q Consensus 235 ~~~~l 239 (460)
.++.|
T Consensus 244 ~~~~l 248 (250)
T 2fbo_J 244 SSTIL 248 (250)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 44444
No 155
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.85 E-value=5.2e-20 Score=152.51 Aligned_cols=174 Identities=19% Similarity=0.270 Sum_probs=125.0
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCc-----------------cccccEEEeecCeEEEeecCCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP-----------------YQTKDIVVMQNGSLLFTRVNQN 122 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~~l~i~~~~~~ 122 (460)
.+.+....+.+|++++|.|.+.+.+.+ .+.|++++..... ....+..+..+++|.|.+++.+
T Consensus 3 ~i~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~ 81 (208)
T 3r4d_A 3 TIEAVPPQVAEDNNVLLLVHNLPLALG-AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK 81 (208)
T ss_dssp EEEEESSEEETTCCEEEEEECCCSSCS-EEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGG
T ss_pred cccCccceeecCCcEEEEEeCCCCCce-EEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccccc
Confidence 344555678899999999997776654 7999997542211 1234555666678999999999
Q ss_pred CCeEEEEEEEcCCCCcceeeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc
Q psy535 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK 199 (460)
Q Consensus 123 d~G~y~C~~~~~~g~~~~~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~ 199 (460)
|+|.|+|.+.+..+. .....+.|.|..+ |.+...+.. +..|+.+.|.|.+ .+.| +.+.|++++..+...
T Consensus 82 D~G~Y~C~~~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~---~~~g~~v~l~C~~---~~~p-p~i~W~~~g~~l~~~ 153 (208)
T 3r4d_A 82 DMGVYTLDMTDENYR-RTQATVRFHVHQPVTQPFLQVTNTT---VKELDSVTLTCLS---NDIG-ANIQWLFNSQSLQLT 153 (208)
T ss_dssp GCEEEEEEEECSSCE-EEEEEEEEEEECCCCCCEEEESCSS---CCTTCCEEEEEEC---SCTT-CEEEEEETTEECCCC
T ss_pred CCeEEEEEEEcccCc-eeEEEEEEEeccCCCCCEEecCCce---EeeCCCEEEEEEC---CCCC-CceEEEECCEeCCCC
Confidence 999999999987542 2455666666655 444333322 7889999999998 5655 799999955444444
Q ss_pred ccEEEe--cceEEEccccceeceEEEEEEecccceeee-eeEEEEe
Q psy535 200 NRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQ-AAQLVVE 242 (460)
Q Consensus 200 ~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~-~~~l~v~ 242 (460)
.++... +..|.|.++...|.|.|+|.|.|..|...+ .+.|.|.
T Consensus 154 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~ 199 (208)
T 3r4d_A 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199 (208)
T ss_dssp SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence 455543 367999999999999999999999998543 3344443
No 156
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.85 E-value=1.9e-21 Score=172.75 Aligned_cols=264 Identities=14% Similarity=0.143 Sum_probs=152.6
Q ss_pred CCeeEEcceeeeecce--eeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecC------eEEEeecCCCCCeE
Q psy535 56 PAKVTFTPTVQYLPFR--LQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNG------SLLFTRVNQNHQGR 126 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g--~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~ 126 (460)
+|.+.+.+.......| +++.|.|.+.+. |+.+.|+|+|+|..+............++ .|.|.++..+|+|.
T Consensus 7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~ 86 (323)
T 2wqr_A 7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT 86 (323)
T ss_dssp CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCc
Confidence 4555444433322334 699999999886 43458999999998864221111111233 47777777789999
Q ss_pred EEEEEEcCCCCcceeeEEEEE---eeCCCceee-CCCcccccCCCCeEEEEeeeeccCCCCCC---eeEEEcCCCccCCc
Q psy535 127 YTCTPYNAHGTQGSSGQMEVL---VRKPPAFTI-KPEAMYQRKVGESVDMHCEAQEAEGTQKP---TITWQRRDGVALPK 199 (460)
Q Consensus 127 y~C~~~~~~g~~~~~~~~~v~---v~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~p~~---~~~W~~~~~~~~~~ 199 (460)
|+|.|.|..+... ..+.+. +..+|.+.+ .|... .+..|+.++|.|.+. ...|.+ .+.|+++++..+..
T Consensus 87 Y~C~a~n~~~~~~--~~~~~~~~~~~~~p~v~~~~p~~~-~v~~G~~v~L~C~~~--g~~P~p~~~~i~W~k~~g~~~~~ 161 (323)
T 2wqr_A 87 YTCQVTYQGHTFE--DSTKKCADSNPRGVSAYLSRPSPF-DLFIRKSPTITCLVV--DLAPSKGTVQLTWSRASGKPVNH 161 (323)
T ss_dssp EEEEEEETTEEEE--EEECCCCCSSGGGCEEEECCCCHH-HHHTSSCCEEEEEEE--EECCCSSCCEEEEEETTCCCCCC
T ss_pred EEEEEEeCCCCcc--eeeecCCCCCCCCCEEEEcCCCHH-HhccCCeEEEEEEEe--ccCCCCCceEEEEEECCCccccc
Confidence 9999998765432 222110 111233323 33332 577899999999983 234555 89999966555432
Q ss_pred cc-EE--------EecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCcee-e----eeecceEEEEe
Q psy535 200 NR-VK--------IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT-G----VATEFSVTLEW 265 (460)
Q Consensus 200 ~~-~~--------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~-~----~~~~~~~~l~w 265 (460)
.. .. ...+.|.|.++...|.|.|+|.|.|..+.......+.+......+|.... . ...+..++|.|
T Consensus 162 ~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C 241 (323)
T 2wqr_A 162 STRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLAC 241 (323)
T ss_dssp CCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEE
T ss_pred ccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEE
Confidence 11 11 12346999999999999999999998643322222221100112222111 1 11267899999
Q ss_pred ecCCCCCCCceeeEEEEEEecCCCCee--ee--ec-cCCC----CceEEEccCccCccEEEEEEEEcCCCC
Q psy535 266 LPGYSGGPDLKQNYVIWYREQGNKDWL--PI--PV-TPPG----STQITINRLTPATTYEFQVVGKNELGD 327 (460)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~-~~~~----~~~~~i~~l~~~~~~~~~~~a~n~~G~ 327 (460)
... +.+++ ...+.|++++...... .. .. ...+ ...|.|..+...+.|.|.|.|.|..+.
T Consensus 242 ~~~--g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 242 LIQ--NFMPE-DISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEE--EEBSS-CCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred Eee--eeeCC-CcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 742 21111 1136788765421111 00 00 0111 135788888888899999999998864
No 157
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=99.85 E-value=7.6e-19 Score=153.40 Aligned_cols=209 Identities=22% Similarity=0.290 Sum_probs=153.7
Q ss_pred ceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285 (460)
Q Consensus 207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~ 285 (460)
..+.+.++.....+.|+..|.|..|..............+.+|.++.. .....++.|+|.++. . .+.+|.+.++.
T Consensus 74 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~~~P~~l~~~~~~~~sv~l~W~~p~---~-~~~~Y~v~~~~ 149 (290)
T 3r8q_A 74 SSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTKT---E-TITGFQVDAVP 149 (290)
T ss_dssp CEEEECSCCSSCEEEEEEEEEETTEECCCEEEEEECCCCCCCCEEEEEEEECSSCEEEEEECCS---C-CCCEEEEEEEE
T ss_pred cEEEeCCCCCCCEEEEEEEEEeCCCCCCCcceeEecCCCCCCCceeEEEEcCCCeEEEEEeCCC---C-cccEEEEEEEE
Confidence 468899999998999999999988876544322222223456666654 446779999999752 2 34789999887
Q ss_pred cCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecC
Q psy535 286 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQP 364 (460)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~ 364 (460)
.+...+..... ......+.|.+|.++..|.|++.|.|..|.+... .+...+ .|.+|.++.+...+ +++.|+|++
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~-~~~~~t---~p~~P~~l~~~~~~~~sv~l~W~~ 224 (290)
T 3r8q_A 150 ANGQTPIQRTI-KPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV-VIDAST---AIDAPSNLRFLATTPNSLLVSWQP 224 (290)
T ss_dssp SSSCCCEEEEE-CTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEEC---CCCCCEEEEEEEEETTEEEEEEEC
T ss_pred CCCCcceEEec-CCCccEEEECCCCCCCEEEEEEEEEeCCcccCCE-EEEecC---CCCCCCccEEEeeCCCEEEEEEeC
Confidence 66544333322 2366789999999999999999999998876542 233332 37889999988766 699999999
Q ss_pred CCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEee
Q psy535 365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444 (460)
Q Consensus 365 ~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n 444 (460)
|. +.+.+|.|+|+..+.. .|..........+.+.+.+|.|++.|.|+|+|.|
T Consensus 225 p~---~~~~~Y~v~~~~~~~~-------------------------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~ 276 (290)
T 3r8q_A 225 PR---ARITGYIIKYEKPGSP-------------------------PREVVPRPRPGVTEATITGLEPGTEYTIYVIALK 276 (290)
T ss_dssp CS---SCCCEEEEEEECTTSC-------------------------CEECSSCCCTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CC---CcccEEEEEEEeCCCC-------------------------cceeEeccCCCccEEEECCCCCCCEEEEEEEEEe
Confidence 85 4799999999975431 1111222335678999999999999999999999
Q ss_pred cCCCCCCC
Q psy535 445 ELGDGMLS 452 (460)
Q Consensus 445 ~~G~s~~s 452 (460)
..|.|++.
T Consensus 277 ~~g~s~p~ 284 (290)
T 3r8q_A 277 NNQKSEPL 284 (290)
T ss_dssp TTEECCCE
T ss_pred CCCcCCcc
Confidence 99998663
No 158
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Probab=99.85 E-value=2.1e-19 Score=158.52 Aligned_cols=275 Identities=15% Similarity=0.119 Sum_probs=168.3
Q ss_pred cceeeeecceeeEEEEEEEecC--C--CCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEEcC
Q psy535 62 TPTVQYLPFRLQGVVQCHIKAN--P--TFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~--~--~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.|....+..|++++|.|.+.+. + +.+.+.|+++|..+.. . .......+ +.|.|.++...|+|.|.|.+.+.
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~-~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~ 83 (313)
T 2d9q_B 6 SVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG-G-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGN 83 (313)
T ss_dssp EESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTT-C-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSS
T ss_pred ECCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCc-c-ceEEEecCeEEEEEEEeccCCCccceEEeeecCC
Confidence 4556778899999999999886 2 1347999999987742 1 11111122 46999999999999999988653
Q ss_pred CCCcceeeEEEEEeeCCCceeeCCCcccccCC--CCeEEEEeeeeccCCCCC-CeeEEEcCCCccC-CcccEE-E----e
Q psy535 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQK-PTITWQRRDGVAL-PKNRVK-I----V 205 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~--g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~-~~~~~~-~----~ 205 (460)
.......+.|.+..+|.. |........ ...+++.+....+.+.+. ..+.+...+.... ...... . .
T Consensus 84 --~~~~~~~~~l~v~~~P~~---P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~ 158 (313)
T 2d9q_B 84 --SLQILDQVELRAGYPPAI---PHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDG 158 (313)
T ss_dssp --SEEEEEEEEEEECCCCCC---CEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCCCCEEEECCCTT
T ss_pred --CceeEEEEEEccCCCCCC---CccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCCcccccCCCCCC
Confidence 333455667777777643 222211112 234444443211111111 1233332211100 001111 1 0
Q ss_pred cceEEE--ccccceeceEEEEEEecccceeeeee-EEEEe-cCCCCCCCceeeee-------ecceEEEEeecCCCCCCC
Q psy535 206 GGNITI--EGLRRVDFGYYECVVSNEVATIVQAA-QLVVE-GTQPHAPYNITGVA-------TEFSVTLEWLPGYSGGPD 274 (460)
Q Consensus 206 ~~~l~i--~~~~~~~~g~y~C~a~n~~g~~~~~~-~l~v~-~~~p~~p~~~~~~~-------~~~~~~l~w~~~~~~~~~ 274 (460)
.....+ .++.....+.+++.|.|..|...... .+... ..+|.+|.++.... ....+.|+|.++...+.
T Consensus 159 ~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~- 237 (313)
T 2d9q_B 159 QSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH- 237 (313)
T ss_dssp CSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTT-
T ss_pred CcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCc-
Confidence 123344 34777778999999999999864322 22221 13577887776543 35789999998764333
Q ss_pred ceeeEEEEEE-ecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCC---CCCCcEEEEccCCCCC
Q psy535 275 LKQNYVIWYR-EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG 344 (460)
Q Consensus 275 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~---~~s~~~~~~~~~~~P~ 344 (460)
....|.+.|+ ..+...|..+.........+.|.+|.+++.|.|+++|.|..|.| .+|..+.+.+.+.+|.
T Consensus 238 ~~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~ 311 (313)
T 2d9q_B 238 INQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA 311 (313)
T ss_dssp SCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC----
T ss_pred eeEEEEEEEccCCCCCCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCC
Confidence 3479999999 66667787665443355789999999999999999999986655 5777888888766553
No 159
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A
Probab=99.85 E-value=1.5e-18 Score=153.79 Aligned_cols=271 Identities=15% Similarity=0.132 Sum_probs=168.7
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
+...+....+..|++++|.|.+.+.+..+.|+|++++..+.. ...+ ....++.|.|.++...|+|.|+|.+ .|..
T Consensus 9 ~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~-~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~ 83 (325)
T 1n26_A 9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS-HPSR-WAGMGRRLLLRSVQLHDSGNYSCYR---AGRP 83 (325)
T ss_dssp CCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC-CCEE-EEEESSEEEECSCCGGGCEEEEEES---SSSC
T ss_pred cccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCc-cccc-cccccceEEecccchhhCeEeEEEe---CCEE
Confidence 334445555578999999999987664558999998876521 2222 3345678999999999999999993 4554
Q ss_pred ceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeecc-CCCCCC--eeEEEcCCCccCCcccEEEe------cceE
Q psy535 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA-EGTQKP--TITWQRRDGVALPKNRVKIV------GGNI 209 (460)
Q Consensus 139 ~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~p~~--~~~W~~~~~~~~~~~~~~~~------~~~l 209 (460)
.. .+.|.|..+|.. |. ......+....+.|.+... .+.+.. .+.+.+..+........... ...+
T Consensus 84 ~~--~~~L~V~~pP~~---P~-l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c 157 (325)
T 1n26_A 84 AG--TVHLLVDVPPEE---PQ-LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSC 157 (325)
T ss_dssp SC--EEEEEECCCCCC---CC-CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSSCEEEEEEEEEETTTTEEEE
T ss_pred ee--eEEEEeccCCCC---Cc-eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCCCCcccccCCCCCCCCCEEE
Confidence 33 466667777753 22 2111123333566766421 111111 33333311110000000110 1235
Q ss_pred EEcccc-ceeceEEEEEEecccceeee-eeEEEE-ecCCCCCCCceeeeee---cceEEEEeecCCCC-CCCceeeEEEE
Q psy535 210 TIEGLR-RVDFGYYECVVSNEVATIVQ-AAQLVV-EGTQPHAPYNITGVAT---EFSVTLEWLPGYSG-GPDLKQNYVIW 282 (460)
Q Consensus 210 ~i~~~~-~~~~g~y~C~a~n~~g~~~~-~~~l~v-~~~~p~~p~~~~~~~~---~~~~~l~w~~~~~~-~~~~~~~~~~~ 282 (460)
.+..+. ....+.|+|.|.|..|.... ...+.+ ...+|.+|.++..... ...+.|+|.++... ...++..|.++
T Consensus 158 ~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~ 237 (325)
T 1n26_A 158 QLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELR 237 (325)
T ss_dssp EECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEE
T ss_pred EECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEE
Confidence 555544 44667889999999998642 222222 1235778877765443 25899999987653 22334799999
Q ss_pred EEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCC---CCCCcEEEEccCC
Q psy535 283 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGP 341 (460)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~---~~s~~~~~~~~~~ 341 (460)
|+..+...|....... ....+.|.+|.++..|.|+++|.|..|.| .+|..+..++...
T Consensus 238 yr~~~~~~W~~~~~~~-~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~~~~ 298 (325)
T 1n26_A 238 YRAERSKTFTTWMVKD-LQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTE 298 (325)
T ss_dssp EEETTCSCCEEEECGG-GCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECCCCC
T ss_pred EEeCCCCCCEEEcccC-CceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceecCCC
Confidence 9998877887765432 45789999999999999999999988754 4556666655443
No 160
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A
Probab=99.85 E-value=7.2e-20 Score=152.23 Aligned_cols=189 Identities=16% Similarity=0.176 Sum_probs=135.0
Q ss_pred CCCCCCCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCCC------Ceeeeec-cCCCCceEEEccCccCcc
Q psy535 244 TQPHAPYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK------DWLPIPV-TPPGSTQITINRLTPATT 314 (460)
Q Consensus 244 ~~p~~p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~i~~l~~~~~ 314 (460)
.+|.+|.++.+... ...+.++|.++.+++.. ..|.+.++..... .+..... .......+.+.+|.+...
T Consensus 3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~~~~~--~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 80 (215)
T 1cd9_B 3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLP--TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY 80 (215)
T ss_dssp CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC--CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred CCCCCCeeeeeecCCCcccEEEEecCCCCCCCc--eeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceE
Confidence 57888988886544 67999999988765543 4688888865421 1222211 122335677778999999
Q ss_pred EEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee-------cceEEEEecCCCCCCccceEEEEEEE-EcCCe
Q psy535 315 YEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV-------NNGFVISWQPPLERASLIQYYLIKYR-TDGSW 385 (460)
Q Consensus 315 ~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~-------~~~v~l~W~~~~~~~~~i~~y~i~~~-~~~~~ 385 (460)
|.|+|.|.|..|.+ .+..+.+.+.. ..|.||.++.+... .+++.|+|++|...+..+.+|+|+|+ ..+.
T Consensus 81 Y~~~V~A~N~~G~~-~s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~~l~Y~v~y~~~~~~- 158 (215)
T 1cd9_B 81 MAIWVQAENMLGSS-ESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKG- 158 (215)
T ss_dssp EEEEEEEEETTEEE-ECCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSTT-
T ss_pred EEEEEEEECCCCCc-cCccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCCCCeEEEEEEEEEccCCCC-
Confidence 99999999999975 35556665544 35899999998775 36899999999765555689999999 4332
Q ss_pred eeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCC---CCCCceeEeecC
Q psy535 386 KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKTK 460 (460)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~---s~~s~~~~~~T~ 460 (460)
..|..+.......+.+.|.+|.|++.|.|+|+|.|..|. |++|..+.++|.
T Consensus 159 ------------------------~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~ 212 (215)
T 1cd9_B 159 ------------------------ANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPT 212 (215)
T ss_dssp ------------------------CCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCC
T ss_pred ------------------------CCcEEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecC
Confidence 122222111234578999999999999999999999765 567888888874
No 161
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A
Probab=99.85 E-value=1.4e-19 Score=149.68 Aligned_cols=187 Identities=22% Similarity=0.334 Sum_probs=138.6
Q ss_pred CCCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeecc-CCCCceEEE--ccCccCccEEEEE
Q psy535 244 TQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-PPGSTQITI--NRLTPATTYEFQV 319 (460)
Q Consensus 244 ~~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i--~~l~~~~~~~~~~ 319 (460)
.||.+|.++.+. .....+.++|.++...+.+ ..|.+.|+..+...|...... ......+.+ .+|.+...|.|++
T Consensus 2 ~pP~~P~nl~c~~~~~~~~~c~W~p~~~~~~~--~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~V 79 (210)
T 3n06_B 2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLP--TNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMV 79 (210)
T ss_dssp CCCCCCEEEEEEBSSSSCEEEEEECCSSSCCC--SEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEEE
T ss_pred CCCCCCeEeEEEeCCCCeEEEEECCCCCCCCC--ceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEEE
Confidence 378889888764 4667999999988765543 589999987665566554311 112334544 5689999999999
Q ss_pred EEEcCCCCCCCCCcEEEEccCC-CCCCCcceEEEeec-----ceEEEEecCCCCCC---c-cceEEEEEEEEcCCeeeec
Q psy535 320 VGKNELGDGMLSNIVVVKTKGP-KPGPPRNVSVTEVN-----NGFVISWQPPLERA---S-LIQYYLIKYRTDGSWKTLN 389 (460)
Q Consensus 320 ~a~n~~G~~~~s~~~~~~~~~~-~P~~p~~~~~~~~~-----~~v~l~W~~~~~~~---~-~i~~y~i~~~~~~~~~~~~ 389 (460)
.|.|..|.+ .+..+.+..... .|.||.++.+.... +++.|+|++|.... + .+.+|+|+|+..+.
T Consensus 80 ~A~N~~G~~-~s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~----- 153 (210)
T 3n06_B 80 NATNQMGSS-FSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA----- 153 (210)
T ss_dssp EEEETTEEE-ECCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTC-----
T ss_pred EEEcCCCCe-eCCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCC-----
Confidence 999999987 355566654443 48899999988653 68999999986543 3 57999999997542
Q ss_pred cccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCC-CCCCceeEeecC
Q psy535 390 KGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKTK 460 (460)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~-s~~s~~~~~~T~ 460 (460)
..|.... ....+.+.|.+|.|++.|.|+|+|.|..|. |+||..+.++|+
T Consensus 154 --------------------~~~~~~~--~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~Tp 203 (210)
T 3n06_B 154 --------------------AEWEIHF--AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIP 203 (210)
T ss_dssp --------------------SSCEEEE--EETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred --------------------CCCEEEe--ccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEECc
Confidence 0121111 124578999999999999999999999997 999999999985
No 162
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.85 E-value=1.1e-20 Score=159.09 Aligned_cols=180 Identities=15% Similarity=0.213 Sum_probs=124.9
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+|.+...|.. .+.+|++++|.|.+.+. +..+.|+|++..+............++.|.|.+++.+|+|.|+|.+.+.
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~~--~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 82 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNYG--AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG 82 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTT--CCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCCC--CcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence 35667777765 78899999999998653 3479999999876421111001123457999999999999999999886
Q ss_pred CCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc-EEEecceEE
Q psy535 135 HGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-VKIVGGNIT 210 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~l~ 210 (460)
.+....+..+.|.|.. +|.+...+.. .+..|++++|.|.+ .+ +.+.+.|++++. .+.... .......|.
T Consensus 83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p~~--~v~~G~~vtL~C~~---~~-~~~~~~w~k~g~-~~~~~~~~~~~~~~l~ 155 (242)
T 1p6f_A 83 ELWSEPSNLLDLVVTEMYDTPTLSVHPGP--EVISGEKVTFYCRL---DT-ATSMFLLLKEGR-SSHVQRGYGKVQAEFP 155 (242)
T ss_dssp TEECCCCCCEEEEEECCSCCCEEEEESCS--EEETTCEEEEEEEC---TT-SCSEEEEEECSS-SCEEEEEECSSEEEEE
T ss_pred CccccCCcceEEEeecccCCCceEccCCC--ccCCCCcEEEEEec---CC-CCCEEEEEECCC-ccCccccCCCceEEEE
Confidence 5544445566676663 5666655533 57899999999997 33 356999999554 332211 111245799
Q ss_pred EccccceeceEEEEEEeccc---ceeeeeeEEEEecC
Q psy535 211 IEGLRRVDFGYYECVVSNEV---ATIVQAAQLVVEGT 244 (460)
Q Consensus 211 i~~~~~~~~g~y~C~a~n~~---g~~~~~~~l~v~~~ 244 (460)
|.++...|+|.|+|.+.|.. ...+..+.|.|.+.
T Consensus 156 I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 156 LGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp EEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred eCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 99999999999999999864 23445667777753
No 163
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.85 E-value=1.3e-19 Score=146.80 Aligned_cols=162 Identities=18% Similarity=0.312 Sum_probs=122.7
Q ss_pred eeecceeeEEEEEEEecCCCC-CeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 66 QYLPFRLQGVVQCHIKANPTF-QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
..+.+|++++|.|.+.+.+.+ ..+.|+|++..+....... ....|.|. +.+|+|.|+|.+.|. ....+
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~----~~~~l~i~--~~~d~G~Y~C~~~n~-----~~~~~ 76 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG----QKTEFKVD--SDDQWGEYSCVFLPE-----PMGTA 76 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC----SEEEEEEC--GGGCCEEEEEEEEST-----TSCEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC----CcEEEEEe--chhhCeEEEEEEECC-----cCcEE
Confidence 346789999999999887543 2799999998886432111 12245555 689999999999972 23456
Q ss_pred EEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEc---CCCccCC---cccEEEe----cceEEEcc
Q psy535 145 EVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQR---RDGVALP---KNRVKIV----GGNITIEG 213 (460)
Q Consensus 145 ~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~---~~~~~~~---~~~~~~~----~~~l~i~~ 213 (460)
.|.|..+|.+...+... .+..|+.++|.|.+ .+.| .+.+.|++ ++...+. ..++.+. ...|.|.+
T Consensus 77 ~l~V~~~P~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 152 (184)
T 3b5h_A 77 NIQLHGPPRVKAVKSSE-HINEGETAMLVCKS---ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN 152 (184)
T ss_dssp EEEECCSCCCEESCSEE-EECTTSCEEEEEEC---CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECS
T ss_pred EEEEecCCceeecCCCc-EEcCCCcEEEEEEE---CCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEee
Confidence 67778899988887655 67889999999998 7888 79999999 4444442 1344432 13799999
Q ss_pred cc-ceeceEEEEEEecccceeeeeeEEEEe
Q psy535 214 LR-RVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 214 ~~-~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
+. ..|.|.|+|.|.|..|.....+.|.|.
T Consensus 153 v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 153 LNMEADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp CCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence 99 899999999999999998888888775
No 164
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.85 E-value=6e-21 Score=156.03 Aligned_cols=128 Identities=20% Similarity=0.252 Sum_probs=101.0
Q ss_pred ceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCC
Q psy535 10 TRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTF 86 (460)
Q Consensus 10 ~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 86 (460)
+++.+..+ ++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..||.+...+....+.+|++++|.|.+.|.|.|
T Consensus 58 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P 136 (203)
T 4fa8_A 58 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP 136 (203)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCC
T ss_pred ceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcE-EEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCC
Confidence 44554443 379999999999999999999998875 77889999999988888888899999999999999999876
Q ss_pred CeEEEeeCCeecC-c-cccccEEEeecCeEEE---eecCCCCCeEEEEEEEcCCCCcc
Q psy535 87 QYVTWTKDKRLLE-P-YQTKDIVVMQNGSLLF---TRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 87 ~~v~W~~~~~~~~-~-~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
.|+|++++..+. + ....++.+..+++|.| .++..+|+|.|+|.|.|..|..+
T Consensus 137 -~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~ 193 (203)
T 4fa8_A 137 -HVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 193 (203)
T ss_dssp -EEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred -EEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence 899998765442 1 2345666777776555 58999999999999999999764
No 165
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-19 Score=174.66 Aligned_cols=218 Identities=16% Similarity=0.241 Sum_probs=152.4
Q ss_pred eeceEEEEEEecccceeeeeeEEEEecCCCCCC-Cceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCC------
Q psy535 217 VDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP-YNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN------ 288 (460)
Q Consensus 217 ~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p-~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~------ 288 (460)
...|.+.| +.|..|..=.. ...+....|.+| .++.. .....++.|+|.++...+..++. |.+.++....
T Consensus 133 ~c~g~~~C-c~n~cG~~C~~-P~~~~~~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~ 209 (680)
T 1zlg_A 133 ECSGVKKC-CSNGCGHTCQV-PKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSED 209 (680)
T ss_pred cCCCcccc-ccccccccccc-cceeeecccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCcc
Confidence 34566777 45555553111 122222356666 56553 45678999999987654455555 9999987532
Q ss_pred --CCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC-CCCCCCcEEEEccC--CCCCCCcceEEEee--c-c---e
Q psy535 289 --KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG-DGMLSNIVVVKTKG--PKPGPPRNVSVTEV--N-N---G 357 (460)
Q Consensus 289 --~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G-~~~~s~~~~~~~~~--~~P~~p~~~~~~~~--~-~---~ 357 (460)
..|..+.. .....+.|.+|.+++.|.|+|.|.|..| .+..+....+++.. .+|.+|.++++... + + +
T Consensus 210 ~~~~w~~v~~--~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~s 287 (680)
T 1zlg_A 210 DATHWQTVAQ--TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVT 287 (680)
T ss_pred ccCceEEEEe--cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceE
Confidence 46766543 2456799999999999999999999999 44444445555543 46889999998876 4 6 9
Q ss_pred EEEEecCCCCCCccceEEEEEEEEc-CCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceE
Q psy535 358 FVISWQPPLERASLIQYYLIKYRTD-GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 436 (460)
Q Consensus 358 v~l~W~~~~~~~~~i~~y~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y 436 (460)
+.|+|++|...+++|.+|.|+|+.. +.-. ......|..... ....+.++|.+|.|++.|
T Consensus 288 v~l~W~pP~~~~g~i~~Y~V~~~~~~~~~~-------------------~~~~~~~~~~~v-~~~~~~~~l~~L~p~t~Y 347 (680)
T 1zlg_A 288 VTIVWDLPEEPDIPVHHYKVFWSWMVSSKS-------------------LVPTKKKRRKTT-DGFQNSVILEKLQPDCDY 347 (680)
T ss_pred EEEEecCCCCCCCceeEEEEEEEecccccc-------------------cCCccceEEEEE-cCCeeEEEeCCCCCCCEE
Confidence 9999999887789999999999832 1100 001112333222 235678999999999999
Q ss_pred EEEEEEeecCCCCCCCce---eEeec
Q psy535 437 EFQVVGKNELGDGMLSNI---VVVKT 459 (460)
Q Consensus 437 ~~~v~a~n~~G~s~~s~~---~~~~T 459 (460)
.|+|.|+|..|.|++|.. +.++|
T Consensus 348 ~~~V~A~n~~G~g~~S~~~~~v~~~T 373 (680)
T 1zlg_A 348 VVELQAITYWGQTRLKSAKVSLHFTS 373 (680)
T ss_pred EEEEEEEECCCcCCCCCCceeEEEEC
Confidence 999999999999999887 77776
No 166
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-17 Score=160.76 Aligned_cols=329 Identities=13% Similarity=0.134 Sum_probs=185.6
Q ss_pred CeEEEeecCCCCCeEEEEEEEcCCCC-cceeeEEEEEeeCCCceeeCCCccccc-C--CCC---eEEEEeeeeccCCCC-
Q psy535 112 GSLLFTRVNQNHQGRYTCTPYNAHGT-QGSSGQMEVLVRKPPAFTIKPEAMYQR-K--VGE---SVDMHCEAQEAEGTQ- 183 (460)
Q Consensus 112 ~~l~i~~~~~~d~G~y~C~~~~~~g~-~~~~~~~~v~v~~~p~~~~~~~~~~~~-~--~g~---~~~l~C~~~~~~~~p- 183 (460)
..+.|.++.....-.|++.|.|..|. ...+....+.....+.....|...... . ... .+.|.+......+.+
T Consensus 223 ~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~~~~g~i 302 (680)
T 1zlg_A 223 ERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPV 302 (680)
T ss_pred CeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceEEEEEecCCCCCCCce
Confidence 35788888887777888889888772 212222222221111111223222111 1 234 677777642111111
Q ss_pred -CCeeEEEcC-CC-ccCCc---ccEEEe--cceEEEccccceeceEEEEEEecccceeeeeeE---EEEe--cCCCCCCC
Q psy535 184 -KPTITWQRR-DG-VALPK---NRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ---LVVE--GTQPHAPY 250 (460)
Q Consensus 184 -~~~~~W~~~-~~-~~~~~---~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~---l~v~--~~~p~~p~ 250 (460)
...+.|... ++ ..... ...... ...+.|.++.....+.|+..|.|..|....+.. +.+. ..+|. |.
T Consensus 303 ~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~-p~ 381 (680)
T 1zlg_A 303 HHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN-KE 381 (680)
T ss_pred eEEEEEEEecccccccCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC-cc
Confidence 125666521 11 01111 111122 236788999999999999999998886543222 3332 22333 44
Q ss_pred ceee-eeecceEEE-----------EeecCCCCCCCceeeEEEEEEecCCCC-------e------------eeeeccCC
Q psy535 251 NITG-VATEFSVTL-----------EWLPGYSGGPDLKQNYVIWYREQGNKD-------W------------LPIPVTPP 299 (460)
Q Consensus 251 ~~~~-~~~~~~~~l-----------~w~~~~~~~~~~~~~~~~~~~~~~~~~-------~------------~~~~~~~~ 299 (460)
++.. .....++.| .|.++...+. +..|.+.|+..+... | ........
T Consensus 382 ~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~~~--~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~ 459 (680)
T 1zlg_A 382 QLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDG--QLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMT 459 (680)
T ss_pred ccccccccCccccccccccCCCccccccCCcccCC--cceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeeeeec
Confidence 3332 233344544 8987753322 246777766544321 1 01111122
Q ss_pred CCceEEEccCccCccEEEEEEEEcCCCCCCCCCc-----------------EEEEcc-----CCCCCCCcc----eEEEe
Q psy535 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNI-----------------VVVKTK-----GPKPGPPRN----VSVTE 353 (460)
Q Consensus 300 ~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~-----------------~~~~~~-----~~~P~~p~~----~~~~~ 353 (460)
....+.|.+|.+++.|.|++.|.|..|.+..... +..... ...+.+|.+ +.+..
T Consensus 460 ~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~ 539 (680)
T 1zlg_A 460 HENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQD 539 (680)
T ss_pred cCceEEecCCCCCCeEEEEEEEecCCCCCCccccceeCCCccccccCCccccccCCCCccccccccCCccccceeEEEec
Confidence 4568999999999999999999999996532111 000000 012367888 55555
Q ss_pred ecceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCc
Q psy535 354 VNNGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP 432 (460)
Q Consensus 354 ~~~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p 432 (460)
...++.|+|++|. ..++.|.+|.|+|+....-.... .+ .+.........+.+.+++.|.+|.|
T Consensus 540 ~~~ti~lsW~pP~~~~ng~I~gY~V~y~~~~~~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~l~~L~p 603 (680)
T 1zlg_A 540 VNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQN-----------SL-----PNSIISQSQILPSDHYVLTVPNLRP 603 (680)
T ss_pred cCceEEEEecCCCCCCCCCceeEEEEEEEccCCCccc-----------cc-----cceeeecccccCCcccEEEecCCCC
Confidence 5545999999986 34789999999998643200000 00 0000000112234678999999999
Q ss_pred CceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 433 ATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 433 ~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
++.|.|+|.|.|..|.|++ ..+.++|+
T Consensus 604 ~t~Y~~~V~A~n~~G~G~~-~~~~~~T~ 630 (680)
T 1zlg_A 604 STLYRLEVQVLTPGGEGPA-TIKTFRTP 630 (680)
T ss_pred CceEEEEEEEEcCCCcCCC-cceEEECC
Confidence 9999999999999999988 77777774
No 167
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=99.84 E-value=7.7e-18 Score=152.89 Aligned_cols=294 Identities=16% Similarity=0.181 Sum_probs=192.2
Q ss_pred CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe-eCCCceeeCCCccc-ccCCCCeEEEEeeeeccCCCC--CCee
Q psy535 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-RKPPAFTIKPEAMY-QRKVGESVDMHCEAQEAEGTQ--KPTI 187 (460)
Q Consensus 112 ~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v-~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~p--~~~~ 187 (460)
..+.|.++.....-.|+..|.|..|.... ..+.. ...| .|.... .......+.|.+... .+.+ ...+
T Consensus 59 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~---~~~~~~~~~p----~p~~l~~~~~~~~si~l~W~~~--~~~~i~~Y~v 129 (375)
T 3t1w_A 59 SSCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIPEVP----QLTDLSFVDITDSSIGLRWTPL--NSSTIIGYRI 129 (375)
T ss_dssp CEEEECCCCTTCCEEEEEEEEETTEECCC---EEEEECCCCC----CCSCCEEECCCSSEEEEECCCC--CCTTEEEEEE
T ss_pred cEEEEcCCcCCCEEEEEEEEEcCCCCCCc---EEeeEcCCCC----CCceEEEEecCCCeEEEEEECC--CCCCceEEEE
Confidence 45788888877777777778776654322 22222 1222 122221 222445777777652 1111 1255
Q ss_pred EEEcCCCccCCcccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEE
Q psy535 188 TWQRRDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLE 264 (460)
Q Consensus 188 ~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~ 264 (460)
.|...+.. ........ ....+.+.++.....+.|++.|.|..|....... .... .+.+|..+.. .....++.|+
T Consensus 130 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~-~~~t-~~~~p~~l~~~~~~~~si~l~ 206 (375)
T 3t1w_A 130 TVVAAGEG-IPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL-TQQT-AVPPPTDLRFTNIGPDTMRVT 206 (375)
T ss_dssp EEEESSSC-CSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEE-EEEC-CCCCCEEEEEESCCSSCEEEE
T ss_pred EEEECCCC-CceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeee-eeec-CCCCCceeEEEecccCEEEEE
Confidence 56543321 11111111 2346888999999889999999998886554442 2222 3346666654 3567899999
Q ss_pred eecCCCCCCCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCC
Q psy535 265 WLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343 (460)
Q Consensus 265 w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P 343 (460)
|.++.. . .+..|.+.++..+. ..+...... .....+.+.+|.++..|.|++.|.|..|.+..+. ..+.+ .|
T Consensus 207 W~~p~~--~-~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~-~~~~t---~p 278 (375)
T 3t1w_A 207 WAPPPS--I-DLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKT---GL 278 (375)
T ss_dssp EECCSS--C-CCCEEEEEEEEGGGTTCCEEEEEC-TTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CC
T ss_pred EcCCCC--C-CccEEEEEEEeCCCCCCcEEEEcC-CCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCcee-eEEec---CC
Confidence 998632 2 24789998887653 344444332 2558899999999999999999999998775432 33332 47
Q ss_pred CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535 344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422 (460)
Q Consensus 344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (460)
.+|.++.+.... +++.|+|++| .+.+.+|.|+|+..+... ..... ......
T Consensus 279 ~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~~----------------------~~~~~---~~~~~~ 330 (375)
T 3t1w_A 279 DSPTGIDFSDITANSFTVHWIAP---RATITGYRIRHHPEHFSG----------------------RPRED---RVPHSR 330 (375)
T ss_dssp CCCEEEEEESCCSSCEEEEEECC---SSCCSEEEEEEEETTCCS----------------------SCEEE---EEETTC
T ss_pred CCCCccEeeeccCCEEEEEECCC---CcceeeEEEEEEECCCCC----------------------cceeE---EcCCCc
Confidence 889999998766 6999999998 377999999999865300 00001 112457
Q ss_pred ceEEECCCCcCceEEEEEEEeecCCCCCCCc
Q psy535 423 TQITINRLTPATTYEFQVVGKNELGDGMLSN 453 (460)
Q Consensus 423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~ 453 (460)
+.+.|.+|.|++.|.|+|+|.|..|.|++..
T Consensus 331 ~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~s 361 (375)
T 3t1w_A 331 NSITLTNLTPGTEYVVSIVALNGREESPLLI 361 (375)
T ss_dssp CEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred cEEEECCCCCCCEEEEEEEEECCCCCCCcee
Confidence 7899999999999999999999999998764
No 168
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.84 E-value=8.3e-21 Score=177.14 Aligned_cols=207 Identities=15% Similarity=0.194 Sum_probs=130.4
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe-----------------cCCee-EEcceeee-ecceeeEEEEEE
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE-----------------FPAKV-TFTPTVQY-LPFRLQGVVQCH 79 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-----------------~~p~~-~~~~~~~~-~~~g~~~~l~C~ 79 (460)
.|.|.++..+| |.|+|.|.|..+.. .....|.+. .+|.+ ...|.... +.+|++++|.|.
T Consensus 195 ~L~i~~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~ 272 (457)
T 1hzh_H 195 VVTVPSSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCV 272 (457)
T ss_dssp EEEECSGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEE
T ss_pred EEEecccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEE
Confidence 69999999999 99999999976652 222233221 13444 33333222 567999999999
Q ss_pred EecCCCC---CeEEEeeCCeecCccccccEEEeecCeEEEee---cCCCC---CeEEEEEEEcCCCCcceeeEEEE--Ee
Q psy535 80 IKANPTF---QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR---VNQNH---QGRYTCTPYNAHGTQGSSGQMEV--LV 148 (460)
Q Consensus 80 ~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~d---~G~y~C~~~~~~g~~~~~~~~~v--~v 148 (460)
+.+.+++ ..|+|+|++..+............++.|.+.. +...| +|.|+|.|.|..+.......+.+ .+
T Consensus 273 ~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~ 352 (457)
T 1hzh_H 273 VVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQ 352 (457)
T ss_dssp EECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCC
T ss_pred EEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCC
Confidence 9987654 37999999988753222222233455666553 33555 99999999987655433433433 34
Q ss_pred eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCccc---EE-Eecc------eEEEccccc
Q psy535 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKNR---VK-IVGG------NITIEGLRR 216 (460)
Q Consensus 149 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~~---~~-~~~~------~l~i~~~~~ 216 (460)
..+|.+.+.+.....+..|+ +.|.|.+ .|.++ +.+.|+++ +..+.... .. ..++ .|.+.....
T Consensus 353 ~~~P~v~~~~~~~~~~~~~~-~~l~C~~---~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~ 427 (457)
T 1hzh_H 353 PREPQVYTLPPSRDELTKNQ-VSLTCLV---KGFYPSDIAVEWESN-GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW 427 (457)
T ss_dssp CBCCEEEEECCCGGGGGSSE-EEEEEEE---EEEBSSCCEEEEEET-TEECCCEEECCCEECTTSCEEEEEEEEEEHHHH
T ss_pred CCCCeEEEECCCccccCCCc-EEEEEEE---EeEECCCCEEEEEEC-CEECcceeecCceeCCCCCEEEEEEEEEChHHc
Confidence 56787776654433445555 9999998 56433 39999995 44443211 11 1122 244444444
Q ss_pred eeceEEEEEEecccce
Q psy535 217 VDFGYYECVVSNEVAT 232 (460)
Q Consensus 217 ~~~g~y~C~a~n~~g~ 232 (460)
.|.|.|+|.|.|....
T Consensus 428 ~~~g~YtC~a~n~~l~ 443 (457)
T 1hzh_H 428 QQGNVFSCSVMHEALH 443 (457)
T ss_dssp HTTCCEEEEEECTTSG
T ss_pred cCCCeEEEEEEECCCC
Confidence 6789999999997543
No 169
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.84 E-value=1.1e-20 Score=151.43 Aligned_cols=158 Identities=13% Similarity=0.166 Sum_probs=113.1
Q ss_pred eeecceeeEEEEEEEec-CCCCCeEEEeeCCeecC--------ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 66 QYLPFRLQGVVQCHIKA-NPTFQYVTWTKDKRLLE--------PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~-~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
..+.+|++++|.|...+ ..+.+.|.|+|++..+. .....++.+..+++|.|.+++.+|+|.|+|.|.|..|
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g 85 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence 45678999999994322 22334799999986542 1124566667788899999999999999999999888
Q ss_pred CcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccc
Q psy535 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRR 216 (460)
Q Consensus 137 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~ 216 (460)
....+..+.|.|..++. .|. ....+..++|.|.+ .+.|.|.+.|++++ ..+. ....+.|..+..
T Consensus 86 ~~~~~~~~~l~V~~~~~---~p~---i~~~~~~v~L~C~~---~g~p~p~i~W~~~g-~~l~------~~~~~~i~~~~~ 149 (176)
T 1hng_A 86 TRILNKALDLRILEMVS---KPM---IYWECSNATLTCEV---LEGTDVELKLYQGK-EHLR------SLRQKTMSYQWT 149 (176)
T ss_dssp CEEEEEEEEEEEECCCC---CCE---EEEETTTTEEEEEC---SSCSSCEEEEEETT-EEEE------EESSSEEEEECS
T ss_pred CEEEEEEEEEEEeCCCC---CCE---EEecCCcEEEEEEe---cCCCCcEEEEEECC-EECC------CCCcEEEEEEEc
Confidence 76445566676665432 111 11224469999998 78888999999944 3322 122345557778
Q ss_pred eeceEEEEEEecccceeeeeeEE
Q psy535 217 VDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 217 ~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
.|.|.|+|.|.|..|.......|
T Consensus 150 ~d~G~Y~C~a~N~~g~~~~~~~l 172 (176)
T 1hng_A 150 NLRAPFKCKAVNRVSQESEMEVV 172 (176)
T ss_dssp CCSSCEEEEEEETTEEEEEEECC
T ss_pred cCCeEEEEEEEecCCCceecccc
Confidence 99999999999999987776554
No 170
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.83 E-value=1.2e-19 Score=169.93 Aligned_cols=208 Identities=14% Similarity=0.167 Sum_probs=136.0
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe------------------cCCee-EEcceeeeecceeeEEEEEE
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE------------------FPAKV-TFTPTVQYLPFRLQGVVQCH 79 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------------------~~p~~-~~~~~~~~~~~g~~~~l~C~ 79 (460)
.|.|.++..+|+|.|+|.|.|..+......+.|.|. .+|.+ ...|....+.+|++++|.|.
T Consensus 191 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~ 270 (475)
T 1iga_A 191 QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCT 270 (475)
T ss_pred EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEE
Confidence 588999999999999999999886432333333331 23444 23333344578999999999
Q ss_pred EecCCC--CCeEEEeeCCeecCccccccEEE------eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE-EeeC
Q psy535 80 IKANPT--FQYVTWTKDKRLLEPYQTKDIVV------MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV-LVRK 150 (460)
Q Consensus 80 ~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v-~v~~ 150 (460)
+.+.++ +..|+| ++ ..+.......... ...+.|.|.++..+|+|.|+|.|.|..+.......+.+ .+..
T Consensus 271 ~~g~~p~~~~~i~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~ 348 (475)
T 1iga_A 271 LTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTF 348 (475)
T ss_pred EEcccCCCceEEEE-CC-CCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCC
Confidence 998754 248999 44 3332111111111 13346999999999999999999998887544443332 2356
Q ss_pred CCceeeCCCcccccCCCCeEEEEeeeeccCCC-C-CCeeEEEcCCCccCCcccE-----E-E---e------cceEEEcc
Q psy535 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-Q-KPTITWQRRDGVALPKNRV-----K-I---V------GGNITIEG 213 (460)
Q Consensus 151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~~~~~~~~~-----~-~---~------~~~l~i~~ 213 (460)
+|.+.+.+.....+..|+.+.|.|.+ .+. | .+.+.|+++ +..+..... . . . ...|.|..
T Consensus 349 ~P~v~~~~~~~~~v~~g~~~~L~C~~---~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~ 424 (475)
T 1iga_A 349 RPEVHLLPPPSEELALNELVTLTCLA---RGFSPKDVLVRWLQG-SQELPREKYLTWASRQEPSQGTTTFAVTSILRVAA 424 (475)
T ss_pred CCeEEEECCChHHhccCCceEEEEEE---eeeECCCCEEEEEEC-CEECCCCceeecccccccCCCCCcEEEEEEEEECh
Confidence 78776665443346789999999998 564 3 359999995 444432210 0 1 1 12456666
Q ss_pred ccceeceEEEEEEecccce
Q psy535 214 LRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 214 ~~~~~~g~y~C~a~n~~g~ 232 (460)
....+.|.|+|.|.|....
T Consensus 425 ~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 425 EDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred HHhcCCCEEEEEEEcCCCC
Confidence 6667889999999987544
No 171
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Probab=99.83 E-value=5.2e-19 Score=153.81 Aligned_cols=247 Identities=16% Similarity=0.171 Sum_probs=148.5
Q ss_pred ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
.+..|++++|.|.+. . +. .+.|.+++..... ..+++|.|.++...|+|.|+|.+ .|.......+.|.
T Consensus 17 ~~~~G~~v~l~C~~~---~-~~-~i~W~~~~~~~~~-----~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~ 83 (306)
T 3d85_D 17 PDAPGEMVVLTCDTP---E-ED-GITWTLDQSSEVL-----GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLH 83 (306)
T ss_dssp SSCCCEEEEEECSSS---C-CS-SCEEEETTCCCCC-----EESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEE
T ss_pred cCccCCcEEEECCCC---C-CC-cCEEEECCccccC-----CCCCEEEEEecCcCCCceEEEee---CCcccceEEEEEE
Confidence 467899999999973 2 22 7999996553322 25678999999999999999999 3555544444443
Q ss_pred c------------CCCCC--CCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceE--
Q psy535 243 G------------TQPHA--PYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI-- 304 (460)
Q Consensus 243 ~------------~~p~~--p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 304 (460)
. .++.+ +..+.+... ...++++|.++..... ...|... +......+............+
T Consensus 84 ~~~~~~~~t~i~~~~~~pp~~~~lsC~~~~~~~~~~C~W~pg~~~~l--~~~~~~~-r~~~~~~~~~C~~~~~~~~~c~v 160 (306)
T 3d85_D 84 KKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL--TFSVKSS-RGSSDPQGVTCGAATLSAERVRG 160 (306)
T ss_dssp EEETTEECCCSSCCCC---CCCCCEEEBSSSSSEEEEEEEESCCSSE--EEEEEEE-ECSSSCEEEEECCCEEEEEEEC-
T ss_pred eccCCcceeeeecccCCCCCCCcceEEcCCcccCcEEEecCCCCCce--eEEEEEE-ecCCCCcceECCCCCCCccceee
Confidence 2 11222 224444322 2389999998765332 2233322 221111122111000000111
Q ss_pred -----------EEccCccC----ccEEEEEEEEcCCCCCCCCCcEEEEc-cCCCCCCCcceEEEeec--ceEEEEecCCC
Q psy535 305 -----------TINRLTPA----TTYEFQVVGKNELGDGMLSNIVVVKT-KGPKPGPPRNVSVTEVN--NGFVISWQPPL 366 (460)
Q Consensus 305 -----------~i~~l~~~----~~~~~~~~a~n~~G~~~~s~~~~~~~-~~~~P~~p~~~~~~~~~--~~v~l~W~~~~ 366 (460)
....+.+. ..|.|+|.|.|.+|....+ ..+.. ....|.||.++.+.... ..+.|+|++|.
T Consensus 161 ~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~--~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~ 238 (306)
T 3d85_D 161 DNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYT--SSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPD 238 (306)
T ss_dssp -CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEE--EEECHHHHBCCCCCEEEEEEEC----CEEEEEECCT
T ss_pred cCccccceeeeeeccccccccccEEEEEEEEEEccCCccccc--eEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCC
Confidence 12233333 4799999999999854333 33321 12348999999998743 58999999997
Q ss_pred CCCccc----eEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEE
Q psy535 367 ERASLI----QYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442 (460)
Q Consensus 367 ~~~~~i----~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a 442 (460)
+.+.+. +.|+|+|+..+.+. |.... ....+++.| .+++.|.|+|+|
T Consensus 239 ~~~~p~~~~~L~Y~vryr~~~~~~-------------------------~~~~~--~~~~ts~~l---~~~~~Y~vqVRa 288 (306)
T 3d85_D 239 TWSTPHSYFSLTFCVQVQGKSKRE-------------------------KKDRV--FTDKTSATV---ICRKNASISVRA 288 (306)
T ss_dssp TSCSCTTTSCEEEEEEEECC-------------------------------CEE--EESSSEEEE---CCCSSCEEEEEE
T ss_pred CCcCCCceeeEEEEEEEEECCCCc-------------------------cEEEe--eccccEEEE---eCCCeEEEEEEe
Confidence 655433 79999999765311 11111 123455665 459999999999
Q ss_pred eecCCCCCCCceeEe
Q psy535 443 KNELGDGMLSNIVVV 457 (460)
Q Consensus 443 ~n~~G~s~~s~~~~~ 457 (460)
.|..|.|.||++...
T Consensus 289 ~~~~~~G~WSeWS~~ 303 (306)
T 3d85_D 289 QDRYYSSSWSEWASV 303 (306)
T ss_dssp EESSSCCCCCCCEEE
T ss_pred ccCCCCCCCCCCCCC
Confidence 999999999998654
No 172
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.83 E-value=4.2e-20 Score=152.22 Aligned_cols=173 Identities=12% Similarity=0.155 Sum_probs=119.0
Q ss_pred cceeeeecceeeEEEEEEEecCCC----CCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEE
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPT----FQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~ 131 (460)
.+....+.+|+++.|.|.+.+.|. .+.+.|+|++..... ...+.....+ .+|.|.+++.+|+|.|+|.+
T Consensus 8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~-~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 86 (202)
T 3bp6_B 8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSL-QSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV 86 (202)
T ss_dssp SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCC-BCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccc-cCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEE
Confidence 444567889999999999988764 147999994443322 2233333332 57999999999999999999
Q ss_pred EcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecc---e
Q psy535 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG---N 208 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~---~ 208 (460)
.|..+.. +..+.|.|..++..... ....+..|+.+.|.|.+ .|.|.|.+.|++++. ...........+ .
T Consensus 87 ~~~~~~~--~~~~~l~V~~~~~~p~~--~~~~~~~g~~v~l~C~~---~g~P~p~v~W~~~~~-~~~~~~~~~~~~~~~~ 158 (202)
T 3bp6_B 87 ICGAAWD--YKYLTVKVKASYMRIDT--RILEVPGTGEVQLTCQA---RGYPLAEVSWQNVSV-PANTSHIRTPEGLYQV 158 (202)
T ss_dssp EETTEEE--EEEEEEEEEBCCCCEEE--EEEECTTTCCEEEEEEE---EEBSCCEEEETTCCS-CCEEEEEECTTSCEEE
T ss_pred EeCCCcc--eEEEEEEecCCCCcccE--EEEecCCCCeEEEEEEc---cccCCceEEEEeCCC-CccCceeeCCCCCEEE
Confidence 9987764 55666666655422111 11145689999999999 679999999998544 322211111122 3
Q ss_pred EEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 209 l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
+.+..+...|.|.|+|.|.|..|.......+.+..
T Consensus 159 ~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~ 193 (202)
T 3bp6_B 159 TSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLS 193 (202)
T ss_dssp EEEEEECCCTTCCEEEEEEETTTTEEEEEEECC--
T ss_pred EEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecC
Confidence 45668888899999999999999988887776643
No 173
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Probab=99.83 E-value=4.7e-19 Score=145.60 Aligned_cols=173 Identities=19% Similarity=0.311 Sum_probs=127.5
Q ss_pred CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535 248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326 (460)
Q Consensus 248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G 326 (460)
+|.++.. .....++.|+|.++.. . .+.+|.+.|+..+...+............+.|.+|.+++.|.|++.|.|..|
T Consensus 25 ~P~~l~~~~~~~~sv~lsW~~p~~--~-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g 101 (203)
T 2gee_A 25 QPTDLSFVDITDSSIGLRWTPLNS--S-TIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGG 101 (203)
T ss_dssp CCEEEEEECCTTTCEEEEEECCSS--S-SCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEESSSC
T ss_pred CCCccEEEecCCCEEEEEecCCCC--C-CccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEEEeCCC
Confidence 5666654 4457799999998752 2 3479999988766543332222223567899999999999999999999887
Q ss_pred CCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccce
Q psy535 327 DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405 (460)
Q Consensus 327 ~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (460)
.+. ...+.+...+| +|.++++...+ +++.|+|++|. ++.+.+|.|+|+..+...
T Consensus 102 ~s~---~~~~~t~~~~p-~P~~l~~~~~~~~sv~l~W~~p~--~~~i~~Y~v~~~~~~~~~------------------- 156 (203)
T 2gee_A 102 EST---PTTLTQQTAVP-PPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEE------------------- 156 (203)
T ss_dssp BCC---CEEEEEECCCC-CCEEEEEEEEETTEEEEEEECCS--SCCCSEEEEEEEETTCGG-------------------
T ss_pred ccc---cEeeeecCCCc-CCCceEEEEcCCCEEEEEEcCCC--CCCccEEEEEEEECCCCC-------------------
Confidence 654 44555555545 89999987766 69999999995 458999999999754300
Q ss_pred ecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454 (460)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~ 454 (460)
.|... ......+.+.|.+|.|++.|.|+|+|.|..|.|+++..
T Consensus 157 -----~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~~ 199 (203)
T 2gee_A 157 -----DVAEL-SISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG 199 (203)
T ss_dssp -----GCEEE-EECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred -----ccEEE-EcCCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCeee
Confidence 01111 11356789999999999999999999999999987643
No 174
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.83 E-value=4.1e-19 Score=159.05 Aligned_cols=165 Identities=13% Similarity=0.188 Sum_probs=109.5
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC---------------ccccccEEEeec-----CeEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE---------------PYQTKDIVVMQN-----GSLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~-----~~l~i~~ 118 (460)
.|....+.+|++++|.|.+.+.+ +.+.|.|+|+ +..+. .....++.+..+ .+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (344)
T 1za6_B 6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS 85 (344)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence 34456788999999999998864 2347999996 33221 012345555432 3799999
Q ss_pred cCCCCCeEEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcC
Q psy535 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRR 192 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~ 192 (460)
++.+|+|.|+|.+.|..+..... ..|.|. .+|.+...+... .+..|+.++|.|.+ .|. |. +.+.|+++
T Consensus 86 v~~~D~G~Y~C~~~n~~~~~~~~--~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~ 159 (344)
T 1za6_B 86 LRSEDTAVYFCTRSLNMAYWGQG--TLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLV---KDYFPEPVTVSWNSG 159 (344)
T ss_dssp CCGGGCEEEEEEETTTTCEECCC--EEEEECSSCCBCCEEEEECCSC-TTTSSSEEEEEEEE---EEEBSSCCCEEETTT
T ss_pred CCcccCEEEEEEEecCcceecCc--EEEEEecCCCCCCeEEEccccc-cccCCCcEEEEEEE---eeEECCCeEEEEecC
Confidence 99999999999998854332223 344444 345444333222 46789999999999 454 64 79999985
Q ss_pred CCccC---------CcccEEEecceEEEccccceeceEEEEEEecccceee
Q psy535 193 DGVAL---------PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV 234 (460)
Q Consensus 193 ~~~~~---------~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 234 (460)
+.... ....+. ....|.|..+...| |.|+|.|.|..+...
T Consensus 160 g~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~ 208 (344)
T 1za6_B 160 ALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTK 208 (344)
T ss_dssp TBCTTEEECCCEECTTSCEE-EEEEEEEETTHHHH-BCEEEEEEEGGGTEE
T ss_pred CccCceeECCCeECCCCCEE-EEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 43210 011111 22368888888878 999999999887643
No 175
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.83 E-value=7.2e-20 Score=149.16 Aligned_cols=138 Identities=17% Similarity=0.337 Sum_probs=110.8
Q ss_pred ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEecCCeeEEcce--eeeecceeeEEEEEEEecCC
Q psy535 8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEFPAKVTFTPT--VQYLPFRLQGVVQCHIKANP 84 (460)
Q Consensus 8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~ 84 (460)
.+.|+.+..+++|.|.+++.+|+|.|+|.+.+..+. .....+.|.|..+|.+...+. ...+.+|+.+.|.|.+.+.|
T Consensus 47 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p 126 (189)
T 2v5t_A 47 SDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP 126 (189)
T ss_dssp CCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEES
T ss_pred cCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCC
Confidence 568888888899999999999999999999998744 334567777877777765443 45677899999999999987
Q ss_pred CCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 85 TFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 85 ~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
.+ .+.|+++|..+... .+... ..++.|.|.++..+|+|.|+|.|.|..|....+..+.|.|
T Consensus 127 ~~-~v~W~~~g~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 127 EP-AISWFRNGKLIEEN--EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp CC-EEEEEETTEECCCS--SSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CC-eEEEEECCEECcCC--CcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 76 79999999988642 23332 2346799999999999999999999999887777766655
No 176
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.83 E-value=1.6e-19 Score=149.93 Aligned_cols=143 Identities=24% Similarity=0.442 Sum_probs=113.5
Q ss_pred cCcccceEEEee--CC--eEEEeecCC-CCCeeEEEEEEeCCCCcceeeeEEEEecC-------CeeEEcceeeeeccee
Q psy535 5 VGSLETRVVIKK--DG--TLVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFP-------AKVTFTPTVQYLPFRL 72 (460)
Q Consensus 5 ~~~~~~r~~~~~--~~--~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~ 72 (460)
+...+.|+.+.. +| +|.|.+++. +|+|.|+|.|.|..|...+..+.|.|..+ |.+...+....+.+|+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~ 126 (212)
T 2yd1_A 47 VSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126 (212)
T ss_dssp CCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTC
T ss_pred CCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCC
Confidence 344667777754 33 899999999 99999999999998874477888998765 6777777778888999
Q ss_pred eEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC
Q psy535 73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP 151 (460)
Q Consensus 73 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~ 151 (460)
.++|.|.+.+.|.+ .+.|++++..+... ..++ ...++.|.|.++..+|+|.|+|.|.|..|..... .+.|.|..+
T Consensus 127 ~v~l~C~~~g~p~p-~i~W~~~~~~~~~~-~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~-~~~l~V~~~ 201 (212)
T 2yd1_A 127 TVLMTCKAIGNPTP-NIYWIKNQTKVDMS-NPRY-SLKDGFLQIENSREEDQGKYECVAENSMGTEHSK-ATNLYVKVR 201 (212)
T ss_dssp CEEECCEEECSSCC-EEEEEETTEECCTT-STTE-EEETTEEEECSCCGGGCEEEEEEEEETTEEEECC-CEEEEEEC-
T ss_pred eEEEEEEeccCCCC-eEEEEECCeEcccC-CCeE-EccCCeEEEccCChhhCEEEEEEeecCCCceeEE-EEEEEEEec
Confidence 99999999998776 79999999988642 2333 3457799999999999999999999999876432 345555544
No 177
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.83 E-value=1.5e-19 Score=147.31 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=105.0
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CC
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DK 95 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~ 95 (460)
++|.|.+++.+|+|.|+|.|.|. +.. +..+.|.|..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++ ++
T Consensus 56 ~~L~i~~~~~~d~G~Y~C~~~n~-~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~g 132 (190)
T 2wv3_A 56 MEYRINKPRAEDSGEYHCVYHFV-SAP-KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHP-EWMWRKKENG 132 (190)
T ss_dssp EEEEESSCCGGGCEEEEEEEEET-TEE-EEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCC-EEEEEEEETT
T ss_pred EEEEEecCCcccCEEEEEEEEeC-Ccc-cccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCC-ceEEEEcCCC
Confidence 47999999999999999999998 554 78899999999999888888889999999999999998876 899999 77
Q ss_pred eecCcc-ccccEEEeecC---eEEEeecC-CCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 96 RLLEPY-QTKDIVVMQNG---SLLFTRVN-QNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 96 ~~~~~~-~~~~~~~~~~~---~l~i~~~~-~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
..+... ...++.+..++ .|.|.++. .+|+|.|+|.|.|..|....+..+.|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 133 VFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred ceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 766421 23444444433 69999999 799999999999999987666666554
No 178
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.82 E-value=3.1e-19 Score=144.62 Aligned_cols=159 Identities=14% Similarity=0.210 Sum_probs=117.9
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCc------------cccccEEEe----e--cCeEEEeecCCCCCeE
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP------------YQTKDIVVM----Q--NGSLLFTRVNQNHQGR 126 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~------------~~~~~~~~~----~--~~~l~i~~~~~~d~G~ 126 (460)
...+.+|++++|.|.+.+.|.+ .+.|++++..+.. ....+.... . ..+|.|.+++.+|+|.
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred cEEEeCCCCEEEEEEEcCCCce-EEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 3567789999999999877655 7999998863211 012223222 1 2349999999999999
Q ss_pred EEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec
Q psy535 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG 206 (460)
Q Consensus 127 y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 206 (460)
|+|.+.+..+ .+.|.|.. +...+ .. .+..|+.++|.|.+ .+.|.+.+.|+++++.. ....
T Consensus 83 Y~C~~~~~~~------~~~l~V~~---~~~~~-~~-~v~~g~~~~l~C~~---~~~p~~~v~W~~~~~~~------~~~~ 142 (184)
T 2ny1_B 83 YICEVEDQKE------EVQLLVFG---LTANS-DT-HLLQGQSLTLTLES---PPGSSPSVQCRSPRGKN------IQGG 142 (184)
T ss_dssp EEEEETTEEE------EEEEEEEE---EEESS-CS-EEETTCCEEEEEEC---CTTCCCEEEEECTTSCE------EEES
T ss_pred EEEEEEcCCC------cEEEEEEE---ecCCC-Cc-eeecCCCEEEEEEc---CCCCCCEEEEEeCCCcc------ccCc
Confidence 9999987543 33444432 22222 22 57889999999998 67899999999854432 3466
Q ss_pred ceEEEccccceeceEEEEEEecccceeeeeeEEEEecC
Q psy535 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244 (460)
Q Consensus 207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~ 244 (460)
..|.|.++...|.|.|+|.|.|..+.......|.|.+.
T Consensus 143 ~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~ 180 (184)
T 2ny1_B 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF 180 (184)
T ss_dssp SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence 78999999999999999999999999888888888763
No 179
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.82 E-value=1.5e-19 Score=148.36 Aligned_cols=171 Identities=12% Similarity=0.132 Sum_probs=114.5
Q ss_pred Ecceee-eecceeeEEEEEEEecCCCCCeEEEeeCC-eecCccccccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 61 FTPTVQ-YLPFRLQGVVQCHIKANPTFQYVTWTKDK-RLLEPYQTKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 61 ~~~~~~-~~~~g~~~~l~C~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
+.|... .+.+|++++|.|.+.|.|.+ .+.|+++. .++. .... ....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 5 i~p~~~~~~~~G~~v~L~C~~~g~P~p-~i~W~~~~~~~~~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 79 (202)
T 1vca_A 5 TTPESRYLAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLN----GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK 79 (202)
T ss_dssp EESSSEEEEETTSCEEEEEEEESCSSC-EEEEEETTCCCCS----SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred ECCCCcEEEcCCCcEEEEEeecCCCCC-eEEEECCCCCCcc----ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce
Confidence 344443 34489999999999998776 69999843 2221 1111 112346999999999999999999998765
Q ss_pred cceeeEEEEEeeCCCce-eeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCcccE---------EEe
Q psy535 138 QGSSGQMEVLVRKPPAF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKNRV---------KIV 205 (460)
Q Consensus 138 ~~~~~~~~v~v~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~~~---------~~~ 205 (460)
.+..+.|.|..+|.. .+.+. ..+..|+.++|.|.+. .+.|. +.+.|++++. .+..... ...
T Consensus 80 --~~~~~~l~V~~~p~~~~~~~~--~~~~~G~~~~L~C~~~--~~~p~~~~~i~W~k~~~-~l~~~~~~~~~~~~~~~~~ 152 (202)
T 1vca_A 80 --LEKGIQVEIYSFPKDPEIHLS--GPLEAGKPITVKCSVA--DVYPFDRLEIDLLKGDH-LMKSQEFLEDADRKSLETK 152 (202)
T ss_dssp --EEEEEEEEEEBCCSCCEEEES--SCEETTSCEEEEEEEE--EEBSGGGEEEEEEETTE-EEEEEECCSCCSSCCCEEE
T ss_pred --EeeEEEEEEEeCCCCCEeCCc--eEEcCCCCEEEEEEEC--CcCCCCCeEEEEEeCCe-ECcccccccccCcCcceEE
Confidence 455667777766643 33333 2578999999999983 23343 4799999543 3321111 112
Q ss_pred cceEEEccccceeceEEEEEEecccce-------eeeeeEEEEec
Q psy535 206 GGNITIEGLRRVDFGYYECVVSNEVAT-------IVQAAQLVVEG 243 (460)
Q Consensus 206 ~~~l~i~~~~~~~~g~y~C~a~n~~g~-------~~~~~~l~v~~ 243 (460)
...|.|......|.|.|+|.|.|..+. ...+..|.|..
T Consensus 153 ~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y 197 (202)
T 1vca_A 153 SLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197 (202)
T ss_dssp EEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred EEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence 234677888888899999999998875 23455666653
No 180
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.82 E-value=3.5e-19 Score=153.79 Aligned_cols=181 Identities=20% Similarity=0.351 Sum_probs=125.7
Q ss_pred eeEEcceeeeecceeeEEEEEEEe---cCCCCCeEEEeeCCeecCcc----------------ccccEEEe-----ecCe
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIK---ANPTFQYVTWTKDKRLLEPY----------------QTKDIVVM-----QNGS 113 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~---~~~~~~~v~W~~~~~~~~~~----------------~~~~~~~~-----~~~~ 113 (460)
.+...+....+.+|++++|.|.+. +.+. +.|.|++++...... ...++... .+++
T Consensus 7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHV-DRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp -----CCEEEEETTCCEEECCBCCCSSCCCE-EEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred ccccCCCceEEecCCcEEEEEEeecCCCCce-EEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 445566778889999999999987 4443 479999965432110 11333332 1267
Q ss_pred EEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCC
Q psy535 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193 (460)
Q Consensus 114 l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~ 193 (460)
|.|.+++.+|+|.|+|.+.+..+.......+.|.|... .|... .+..|+.++|.|.+....+.|.+.+.|++++
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~p~~~-~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~ 159 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-----EPRDL-RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS 159 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-----CCSEE-EEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-----CCCcc-ccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence 99999999999999999998766655566666666411 22233 6789999999999843357789999999854
Q ss_pred CccCCc----------------------ccEEE------ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535 194 GVALPK----------------------NRVKI------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245 (460)
Q Consensus 194 ~~~~~~----------------------~~~~~------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~ 245 (460)
+..... .++.. ....|.|.++...|.|.|+|.|.|..|.....+.|.|...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 239 (268)
T 3mj6_A 160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239 (268)
T ss_dssp TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCC
Confidence 432211 11221 24579999999999999999999999998888888885433
No 181
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.82 E-value=1.2e-19 Score=150.26 Aligned_cols=140 Identities=18% Similarity=0.280 Sum_probs=109.5
Q ss_pred ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC---CeeEEcceeeeecceeeEEEEEEEecCC
Q psy535 8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP---AKVTFTPTVQYLPFRLQGVVQCHIKANP 84 (460)
Q Consensus 8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~ 84 (460)
..+|+.+..+++|.|.+++.+|+|.|+|.+.+..+......+.|.|..+ |.+...+.. +.+|+++.|.|.+.+.|
T Consensus 61 ~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p 138 (208)
T 3r4d_A 61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG 138 (208)
T ss_dssp CCSSEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT
T ss_pred ccceeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC
Confidence 5679999888999999999999999999999986554567788888765 344443333 78899999999998865
Q ss_pred CCCeEEEeeCCeecCccccccEEEee-cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCce
Q psy535 85 TFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF 154 (460)
Q Consensus 85 ~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~ 154 (460)
+ .+.|++++..+.. ..++.... ++.|.|.++..+|+|.|+|.|.|..|.. .+..++|.|..+|..
T Consensus 139 -p-~i~W~~~g~~l~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~s~~~~l~v~~~~~~ 204 (208)
T 3r4d_A 139 -A-NIQWLFNSQSLQL--TERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR-RSNSIKLDIIFDPHH 204 (208)
T ss_dssp -C-EEEEEETTEECCC--CSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCE-ECCCEEECCC-----
T ss_pred -C-ceEEEECCEeCCC--CCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcc-cCCceeeeEEeCCcc
Confidence 3 7999999998863 23444433 3689999999999999999999999887 577888888877653
No 182
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Probab=99.82 E-value=1.6e-17 Score=144.49 Aligned_cols=207 Identities=18% Similarity=0.283 Sum_probs=154.0
Q ss_pred ceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285 (460)
Q Consensus 207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~ 285 (460)
..+.|.++.....+.+++.|.|..|... ...+.+. .+|.+|.++.. .....++.|+|.++. ..+.+|.+.++.
T Consensus 68 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~-~~~~~~~-t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~ 141 (283)
T 1tdq_A 68 SQYSVQALRPGSRYEVSISAVRGTNESD-ASSTQFT-TEIDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYST 141 (283)
T ss_dssp SEEEECSCCTTCEEEEEEEEEETTEECC-CEEEEEE-CCCCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEE
T ss_pred CEEEecCCCCCCEEEEEEEEECCCCCCC-CeeEEEE-CCCCCCCceEEEecCCCeEEEEecCCC----CCccEEEEEEEe
Confidence 4688999999888999999999877643 2333333 46777777664 446779999999764 234799999988
Q ss_pred cCCCCeeeeeccCCC---CceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEE
Q psy535 286 QGNKDWLPIPVTPPG---STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361 (460)
Q Consensus 286 ~~~~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~ 361 (460)
.....+....... . ...+.+.+|.+++.|.|++.|.|..|.+. ...+..... |.+|.++.+.... +++.|+
T Consensus 142 ~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~---~~~~~~~t~-~~~P~~l~~~~~~~~sv~l~ 216 (283)
T 1tdq_A 142 LAGEQYHEVLVPK-GIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSI---PATMNARTE-LDSPRDLMVTASSETSISLI 216 (283)
T ss_dssp TTCCCCEEEEEEC-CSSSEEEEEECSCCTTCEEEEEEEEEETTEECC---CEEEEEECC-CCCCEEEEEEEECSSCEEEE
T ss_pred CCCCcceEEECCC-CCcccceEEEecCCCCCEEEEEEEEEeCCCCCc---ceEEEecCC-CCCCCccEEeEecCCEEEEE
Confidence 7665554443322 2 67899999999999999999999988653 333333333 6688899988866 699999
Q ss_pred ecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEE
Q psy535 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 441 (460)
Q Consensus 362 W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~ 441 (460)
|++| ++.+.+|.|+|+..+... .... .....+.+.|.+|.|++.|.|+|+
T Consensus 217 W~~p---~~~i~~Y~v~~~~~~~~~------------------------~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~ 266 (283)
T 1tdq_A 217 WTKA---SGPIDHYRITFTPSSGIS------------------------SEVT---VPRDRTSYTLTDLEPGAEYIISIT 266 (283)
T ss_dssp EECC---CSCCSEEEEEEECSSSCC------------------------EEEE---EESSCSEEEECCCCTTCCEEEEEE
T ss_pred EeCC---CCcccEEEEEEEcCCCCe------------------------eEEE---eCCCccEEEECCCCCCCEEEEEEE
Confidence 9997 467899999999754310 0011 124567899999999999999999
Q ss_pred EeecCCCCCCCce
Q psy535 442 GKNELGDGMLSNI 454 (460)
Q Consensus 442 a~n~~G~s~~s~~ 454 (460)
|.|..|.|+++..
T Consensus 267 A~~~~g~s~~~~~ 279 (283)
T 1tdq_A 267 AERGRQQSLESTV 279 (283)
T ss_dssp EEETTEECCCEEE
T ss_pred EEcCCCCCcceee
Confidence 9999999987754
No 183
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.82 E-value=8e-20 Score=147.92 Aligned_cols=147 Identities=13% Similarity=0.181 Sum_probs=105.9
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEee-cCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR-VNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
...+|+++.|.|.+.+ ++ .|+|+|+|..+... .+++|.|.+ +..+|+|.|+|.|.|..|.......+.
T Consensus 10 v~~~G~~v~L~C~~~~-~~--~i~W~k~g~~l~~~--------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~ 78 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE--NLKWEKNGQELPQK--------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR 78 (186)
T ss_dssp EEEETTEEEEECSSCC-CT--TCEEEETTEEECSC--------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred EEeCCcEEEEEEeCCC-CC--ceEEEECCEECCCC--------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence 3467999999999987 43 39999999998642 345799999 999999999999999888744443333
Q ss_pred EEeeCCCceee--------------CCC--------cccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE
Q psy535 146 VLVRKPPAFTI--------------KPE--------AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK 203 (460)
Q Consensus 146 v~v~~~p~~~~--------------~~~--------~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~ 203 (460)
|.+..++.... .+. ....+..|+.+.|.|.+ |.|.+.|++++ ..+....
T Consensus 79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~------p~p~i~W~k~g-~~i~~~~-- 149 (186)
T 1jbj_A 79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL------TDKTIKWLKDG-SIISPLN-- 149 (186)
T ss_dssp CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS------SCSCEEEEETT-EECCCSS--
T ss_pred EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC------CCCeEEEEECC-EECcccC--
Confidence 33322222100 000 01134489999999985 77899999954 4443221
Q ss_pred EecceEEEccccceeceEEEEEEeccccee
Q psy535 204 IVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 204 ~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.....|.|.++...|+|.|+|.|.|..|..
T Consensus 150 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 150 ATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 145679999999999999999999998876
No 184
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.82 E-value=3.2e-21 Score=178.69 Aligned_cols=208 Identities=13% Similarity=0.170 Sum_probs=135.4
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe----------cC--CeeEE-cceeee-ecceeeEEEEEEEecC
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE----------FP--AKVTF-TPTVQY-LPFRLQGVVQCHIKAN 83 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----------~~--p~~~~-~~~~~~-~~~g~~~~l~C~~~~~ 83 (460)
+.|.|.+++.+| |.|+|.|.|..+.. .....+.+. .+ |.+.. .|.... +.+|++++|.|.+.+.
T Consensus 180 s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~ 257 (434)
T 1igy_B 180 SSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDI 257 (434)
T ss_dssp EEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCC
T ss_pred EEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEecc
Confidence 369999999999 99999999988763 222333221 00 33333 332222 7789999999999987
Q ss_pred CC---CCeEEEeeCCeecCccccccEEE------eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE--EeeCCC
Q psy535 84 PT---FQYVTWTKDKRLLEPYQTKDIVV------MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV--LVRKPP 152 (460)
Q Consensus 84 ~~---~~~v~W~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v--~v~~~p 152 (460)
++ ++.|+|+|++..+.......... ...+.|.|.++..+|+|.|+|.|.|..|.......+.+ .+..+|
T Consensus 258 ~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P 337 (434)
T 1igy_B 258 SKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAP 337 (434)
T ss_dssp CSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCC
T ss_pred ccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCC
Confidence 42 34799999998764321111100 11346999999999999999999998886534344433 445678
Q ss_pred ceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCCccCCcccE-E---Eecc------eEEEccccceece
Q psy535 153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDGVALPKNRV-K---IVGG------NITIEGLRRVDFG 220 (460)
Q Consensus 153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~~~~~~~~~-~---~~~~------~l~i~~~~~~~~g 220 (460)
.+.+.+... ....|+.++|.|.+ .|. |. +.+.|++++. .+..... . ..++ .|.|......|.|
T Consensus 338 ~v~~~~~~~-~~~~~~~~~L~C~~---~g~~P~~~~v~W~k~g~-~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g 412 (434)
T 1igy_B 338 QVYTIPPPK-EQMAKDKVSLTCMI---TDFFPEDITVEWQSDGQ-APENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGN 412 (434)
T ss_dssp CCEEECCCS-SSSSSSEEEEEEEE---EEEBCSCEEEEEEETTS-CCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTC
T ss_pred EEEEECCCH-HHhcCCcEEEEEEE---EeeECCCeEEEEEECCE-ecCCceeccceeCCCCcEEEEEEEEECchhccCCC
Confidence 776665543 23457789999998 553 43 4899999554 3332111 0 1122 3555556666789
Q ss_pred EEEEEEecccce
Q psy535 221 YYECVVSNEVAT 232 (460)
Q Consensus 221 ~y~C~a~n~~g~ 232 (460)
.|+|.|.|....
T Consensus 413 ~YtC~a~n~~l~ 424 (434)
T 1igy_B 413 TFTCSVLHEGLH 424 (434)
T ss_dssp CEEEEEEETTSG
T ss_pred EEEEEEEcCCCC
Confidence 999999997543
No 185
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-18 Score=143.39 Aligned_cols=179 Identities=20% Similarity=0.295 Sum_probs=124.4
Q ss_pred CCCceee-eee--cceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535 248 APYNITG-VAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 323 (460)
Q Consensus 248 ~p~~~~~-~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n 323 (460)
+|.++.. ... ..++.|+|.++ .+. .+.+|.+.|+.... ..|...... .....+.|.+|.+++.|.|++.|.|
T Consensus 2 ~P~~l~v~~v~~~~~si~l~W~~p--~~~-~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~n 77 (201)
T 2ha1_A 2 GPVEVFITETPSQPNSHPIQWNAP--QPS-HISKYILRWRPKNSVGRWKEATIP-GHLNSYTIKGLKPGVVYEGQLISIQ 77 (201)
T ss_dssp CCCEEECCSCSCCSSCEEEEEECC--SST-TCCEEEEEEEETTCSSCCEEEEEC-TTCCEEEECSCCTTEEEEEEEEEEC
T ss_pred CceeEEEEecCCCCCEEEEEEeCC--CCC-CceEEEEEEEECCCCCceEEEecC-CCccEEEecCCCCCCEEEEEEEEEe
Confidence 3445543 223 67999999987 222 34799998887543 455555443 2567899999999999999999999
Q ss_pred CCCCCCCCCcEEEEccCC-----------CCC-CC----cceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCee
Q psy535 324 ELGDGMLSNIVVVKTKGP-----------KPG-PP----RNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWK 386 (460)
Q Consensus 324 ~~G~~~~s~~~~~~~~~~-----------~P~-~p----~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~ 386 (460)
..|.+..+ .+.+.+... .|. +| .++.+...+ +++.|+|++| .+.+.+|.|+|+..+.-
T Consensus 78 ~~G~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p---~~~i~~Y~v~~~~~~~~- 152 (201)
T 2ha1_A 78 QYGHQEVT-RFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSEEG- 152 (201)
T ss_dssp TTSCEEEE-EEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCS---CTTEEEEEEEEEETTTC-
T ss_pred cccccCce-eEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCC---CCCccEEEEEEEECCCC-
Confidence 99987643 333333211 122 22 456776655 6999999998 45899999999964320
Q ss_pred eeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 387 TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
.|..........+++.|.+|.|++.|.|+|+|+|..|.|++......+|
T Consensus 153 ------------------------~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s~~~~tT 201 (201)
T 2ha1_A 153 ------------------------DEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201 (201)
T ss_dssp ------------------------CCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEEEEEEEC
T ss_pred ------------------------CceeEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEeeEeecC
Confidence 0101111234678999999999999999999999999998776555443
No 186
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=149.30 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=98.0
Q ss_pred CcccCcccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---------------------c
Q psy535 2 NTKVGSLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---------------------F 55 (460)
Q Consensus 2 ~~~~~~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------------~ 55 (460)
|++....+.|+++..++ +|.|.+++.+|+|.|+|.|.|+ .. .....+.+. .
T Consensus 40 ng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng--~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (207)
T 3rbs_A 40 NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG--KA-TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQ 116 (207)
T ss_dssp TTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEET--TE-EEEEEEEECTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECC--Ce-EEEEEEEEEccchhhhcccccccccccccCC
Confidence 34444455666665543 6999999999999999999993 32 222333211 2
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEc
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
+|.|...+ ...+.+|+++.|.|.+.|. |.+ .|+|+|+|.++... .++... ...+|.|.++..+|+|.|+|.|.|
T Consensus 117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p-~i~W~k~g~~l~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 192 (207)
T 3rbs_A 117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKET-HIVWYKDEREISVD--EKHDFKDGICTLLITEFSKKDAGIYEVILKD 192 (207)
T ss_dssp SSEEEEEE-EEEEETTTEEEEEEEEESCCTTC-EEEEEETTEEECCC--CCCCCSSEEEEEEETTCCGGGCEEEEEEEEE
T ss_pred CCceEecC-CcEEcCCCcEEEEEEEeCCCCCC-EEEEEECCEECCCC--CceEcCCCEEEEEECCCCcccCEEEEEEEEc
Confidence 56665554 4678889999999999998 555 89999999998642 222211 223699999999999999999999
Q ss_pred CCCCcceeeEE
Q psy535 134 AHGTQGSSGQM 144 (460)
Q Consensus 134 ~~g~~~~~~~~ 144 (460)
..|....+..|
T Consensus 193 ~~G~~~~~~~L 203 (207)
T 3rbs_A 193 DRGKDKSRLKL 203 (207)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 99986555443
No 187
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.81 E-value=1.6e-19 Score=149.87 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=101.9
Q ss_pred cccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec--CCeeEEccee-eeecceeeEEEEEE
Q psy535 3 TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--PAKVTFTPTV-QYLPFRLQGVVQCH 79 (460)
Q Consensus 3 ~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~-~~~~~g~~~~l~C~ 79 (460)
+.+...+.++.+..++.|.|.+++.+|+|.|+|.|.|..+...+..+.|.|.. +|.+...+.. ..+.+|++++|.|.
T Consensus 49 g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~ 128 (213)
T 2x1w_L 49 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 128 (213)
T ss_dssp EEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEE
T ss_pred CccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEE
Confidence 44444556667666779999999999999999999986554434446777754 3445555444 47889999999999
Q ss_pred EecCCCC-CeEEEeeCCeecCcccc--ccEE-------EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 80 IKANPTF-QYVTWTKDKRLLEPYQT--KDIV-------VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 80 ~~~~~~~-~~v~W~~~~~~~~~~~~--~~~~-------~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
+.+.|.+ ..+.|++++..+..... .... ....++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 129 ~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~--~~~~~l~V~ 206 (213)
T 2x1w_L 129 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK--KNSTFVRVH 206 (213)
T ss_dssp EEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE--EEEEEEEEE
T ss_pred EECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE--EEEEEEEEe
Confidence 9986543 36999999886532110 0000 1123469999999999999999999998875 556666667
Q ss_pred CCCce
Q psy535 150 KPPAF 154 (460)
Q Consensus 150 ~~p~~ 154 (460)
.+|.+
T Consensus 207 ~~p~i 211 (213)
T 2x1w_L 207 EDPIE 211 (213)
T ss_dssp C----
T ss_pred ccccc
Confidence 77654
No 188
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=144.92 Aligned_cols=160 Identities=16% Similarity=0.255 Sum_probs=110.5
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC---cc-------------ccccEEEeecCeEEEeecCCCCCe
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE---PY-------------QTKDIVVMQNGSLLFTRVNQNHQG 125 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~---~~-------------~~~~~~~~~~~~l~i~~~~~~d~G 125 (460)
.|....+.+|++++|.|.+.+.++...|.|++++..+. .. ...++.+..+++|.|.+++.+|+|
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G 83 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence 46667788999999999987644444799999876542 10 012555556788999999999999
Q ss_pred EEEEEEEcCCCCcceeeEEEEEeeCCC---ceeeCCCcccccCCCC-eEEEEeeeeccCC-CCCCeeEEEcCCCccCCcc
Q psy535 126 RYTCTPYNAHGTQGSSGQMEVLVRKPP---AFTIKPEAMYQRKVGE-SVDMHCEAQEAEG-TQKPTITWQRRDGVALPKN 200 (460)
Q Consensus 126 ~y~C~~~~~~g~~~~~~~~~v~v~~~p---~~~~~~~~~~~~~~g~-~~~l~C~~~~~~~-~p~~~~~W~~~~~~~~~~~ 200 (460)
.|+|.+.+..+... ..+.|.|..++ .+...+. ....|. .++|.|.+ .+ .|.|.+.|++++. .+.
T Consensus 84 ~Y~C~~~~~~~~~~--~~~~L~V~~~~~~p~i~~~~~---~~~~g~~~v~L~C~~---~g~~p~p~i~W~~~g~-~l~-- 152 (193)
T 2if7_A 84 SYRAQISTKTSAKL--SSYTLRILRQLRNIQVTNHSQ---LFQNMTCELHLTCSV---EDADDNVSFRWEALGN-TLS-- 152 (193)
T ss_dssp EEEEEEECSSCEEE--EEEEEEEECCCEEEEEEECCC------CSSEEEEEEEEE---ESCCTTCEEEEEETTE-EEE--
T ss_pred eEEEEEEecCCCeE--EEEEEEEEccCCCCeEecCce---eecCCCceEEEEEEE---ecCCCceEEEEEeCCE-EcC--
Confidence 99999998877643 35666666554 2332221 233465 89999999 45 5688999999443 221
Q ss_pred cEEEecceEEEccccce-eceEEEEEEecccceeeee
Q psy535 201 RVKIVGGNITIEGLRRV-DFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 201 ~~~~~~~~l~i~~~~~~-~~g~y~C~a~n~~g~~~~~ 236 (460)
.+..|.|...... |.|.|+|.|.|..|..+..
T Consensus 153 ----~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~ 185 (193)
T 2if7_A 153 ----SQPNLTVSWDPRISSEQDYTCIAENAVSNLSFS 185 (193)
T ss_dssp ----SSSEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred ----CCCeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence 2345666544443 8999999999999987543
No 189
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.81 E-value=6.1e-19 Score=144.34 Aligned_cols=124 Identities=20% Similarity=0.262 Sum_probs=102.2
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 97 (460)
++|.|.+++.+|+|.|+|.|.+..+...+..+.|.|..+|.+...|....+.+|+.+.|.|.+.+.|.+..+.|++++..
T Consensus 68 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~ 147 (195)
T 2c5d_C 68 SQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVP 147 (195)
T ss_dssp EEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCB
T ss_pred cEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEe
Confidence 48999999999999999999998776555668999999999988888888999999999999999876547999999998
Q ss_pred cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
+...... ..++.|.|.++. |+|.|+|.|.|..|... +..+.|.|
T Consensus 148 ~~~~~~~----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~-s~~~~l~V 191 (195)
T 2c5d_C 148 LATAPGH----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTT-SRTATITV 191 (195)
T ss_dssp SSSSTTS----SCCEEEEECCCS--SCEEEEEEEEETTEEEE-CCCEEEEE
T ss_pred ccCCCCc----CCCCeEEEcccc--cCceEEEEEEcCCCceE-EEEEEEEE
Confidence 8643221 345679999887 89999999999988763 23444554
No 190
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=99.81 E-value=2.8e-17 Score=149.21 Aligned_cols=213 Identities=16% Similarity=0.215 Sum_probs=153.5
Q ss_pred cceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEE
Q psy535 206 GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYR 284 (460)
Q Consensus 206 ~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~ 284 (460)
...+.+.++.....+.|+..|.|..|...... +.....+| +|.++.. .....++.|+|.++. + ..+.+|.+.++
T Consensus 58 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~~~~p-~p~~l~~~~~~~~si~l~W~~~~--~-~~i~~Y~v~~~ 132 (375)
T 3t1w_A 58 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS-DTIIPEVP-QLTDLSFVDITDSSIGLRWTPLN--S-STIIGYRITVV 132 (375)
T ss_dssp CCEEEECCCCTTCCEEEEEEEEETTEECCCEE-EEECCCCC-CCSCCEEECCCSSEEEEECCCCC--C-TTEEEEEEEEE
T ss_pred ccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEE-eeEcCCCC-CCceEEEEecCCCeEEEEEECCC--C-CCceEEEEEEE
Confidence 34688999999999999999999877544332 33332334 3555554 446789999999763 2 24589999988
Q ss_pred ecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEec
Q psy535 285 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQ 363 (460)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~ 363 (460)
..+................+.|.+|.+++.|.|++.|.|..|.+..+. ....+ .|.+|.++.+...+ +++.|+|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t---~~~~p~~l~~~~~~~~si~l~W~ 208 (375)
T 3t1w_A 133 AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT-LTQQT---AVPPPTDLRFTNIGPDTMRVTWA 208 (375)
T ss_dssp ESSSCCSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CCCCCEEEEEESCCSSCEEEEEE
T ss_pred ECCCCCceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCee-eeeec---CCCCCceeEEEecccCEEEEEEc
Confidence 765433222222333667899999999999999999999999876665 33333 35588899988666 69999999
Q ss_pred CCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEe
Q psy535 364 PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443 (460)
Q Consensus 364 ~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~ 443 (460)
+|. ++.+.+|.|+|+..+.- ..|.... .....+.+.+.+|.|++.|.|+|+|.
T Consensus 209 ~p~--~~~i~~Y~v~~~~~~~~------------------------~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~ 261 (375)
T 3t1w_A 209 PPP--SIDLTNFLVRYSPVKNE------------------------EDVAELS-ISPSDNAVVLTNLLPGTEYVVSVSSV 261 (375)
T ss_dssp CCS--SCCCCEEEEEEEEGGGT------------------------TCCEEEE-ECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred CCC--CCCccEEEEEEEeCCCC------------------------CCcEEEE-cCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence 974 46799999999975420 0111111 12456899999999999999999999
Q ss_pred ecCCCCCCCce
Q psy535 444 NELGDGMLSNI 454 (460)
Q Consensus 444 n~~G~s~~s~~ 454 (460)
|..|.|+++..
T Consensus 262 ~~~g~s~~~~~ 272 (375)
T 3t1w_A 262 YEQHESTPLRG 272 (375)
T ss_dssp ETTEECCCEEE
T ss_pred cCCCcCCceee
Confidence 99999876643
No 191
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.81 E-value=4.1e-19 Score=143.65 Aligned_cols=134 Identities=20% Similarity=0.269 Sum_probs=106.0
Q ss_pred CcccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535 6 GSLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 6 ~~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
.....++.+..+ ++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+.+|+++.|.|.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~ 122 (182)
T 1rhf_A 43 VQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122 (182)
T ss_dssp CCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEE
T ss_pred cCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEe
Confidence 333445544443 489999999999999999999987765567899999999999888888889999999999999
Q ss_pred ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
.+.|.+..+.|++++..+..... ..+.|.|.++ +|+|.|+|.|.|..|... +..+.|.|
T Consensus 123 ~g~p~p~~v~W~~~~~~~~~~~~------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~-s~~~~l~V 181 (182)
T 1rhf_A 123 VGPPEPVTIVWWRGTTKIGGPAP------SPSVLNVTGV--TQSTMFSCEAHNLKGLAS-SRTATVHL 181 (182)
T ss_dssp ECSSSCCEEEEEETTEECSCSEE------SSEEEEECCC--SSCEEEEEEEEETTEEEE-CCCEEEEE
T ss_pred cCCCCCCEEEEEcCCeECCCCCC------CceEEEEecc--ccCeEEEEEEECCCCCcc-cceEEEEe
Confidence 99877647999999998853211 4557888887 589999999999988763 23444443
No 192
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.81 E-value=2.5e-19 Score=148.97 Aligned_cols=174 Identities=13% Similarity=0.232 Sum_probs=118.0
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEe---ecCeEEEeecCCC
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVM---QNGSLLFTRVNQN 122 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~---~~~~l~i~~~~~~ 122 (460)
.+...| ...+.+|++++|.|.+.+.+.+ .+.|+|. +.... .....++... .+..|.|.+++.+
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (213)
T 3mj8_L 3 TLTQPP-LVSVALGQKATITCSGDKLSDV-YVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG 80 (213)
T ss_dssp CBBCCS-EEEEETTSCEEEEEECSSTTTS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eEEeCC-cEEEeCCCCEEEEEEcCCCCCc-eEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence 344456 7788899999999999977665 7999982 22110 0012233322 2336999999999
Q ss_pred CCeEEEEEEEcCCCC-cceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCCc
Q psy535 123 HQGRYTCTPYNAHGT-QGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDGV 195 (460)
Q Consensus 123 d~G~y~C~~~~~~g~-~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~~ 195 (460)
|+|.|+|.+.+..+. ......+.|.|. .+|.+...+... .+..|+.++|.|.+ .+. |. +.+.|++++..
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~l~C~~---~g~~p~~~~v~W~k~g~~ 156 (213)
T 3mj8_L 81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSS-EELKTNQATLVCMI---NGFYPADVAVTWEADGTP 156 (213)
T ss_dssp GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCH-HHHTTTEEEEEEEE---EEEBSSCCEEEEEETTEE
T ss_pred hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCc-ccccCCcEEEEEEe---eceeCCCeEEEEEcCCcc
Confidence 999999999998772 113334455555 677777766554 34589999999999 453 44 49999995443
Q ss_pred cCCc---------ccEEEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 196 ALPK---------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 196 ~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
+... .........|.|..+...|.|.|+|.|.|..+.....+
T Consensus 157 l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 207 (213)
T 3mj8_L 157 ITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL 207 (213)
T ss_dssp ECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred cCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence 3221 01111234588999999999999999999887655444
No 193
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=147.97 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=103.7
Q ss_pred ccCcccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec--------------------CC-ee
Q psy535 4 KVGSLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--------------------PA-KV 59 (460)
Q Consensus 4 ~~~~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~p-~~ 59 (460)
.....++|+++..++ +|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|.. .| .+
T Consensus 42 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~ 120 (212)
T 2r15_A 42 SAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 120 (212)
T ss_dssp EECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred EEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce-EEEEEEEEeeccchhhhccccCcccccccCCCccc
Confidence 334455777776654 59999999999999999999987764 4555555432 23 33
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-C---eEEEeecCCCCCeEEEEEEEcCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-G---SLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~---~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
...|....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.... ++..... + .|.|.++..+|+|.|+|.|.|..
T Consensus 121 ~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 197 (212)
T 2r15_A 121 GGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEKALAQTD--HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 197 (212)
T ss_dssp EBCCSEEEEETTCCEEEEEEEECSSCC-EEEEEETTEEECCCS--SEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred ccCCCcEEEccCCeEEEEEEEcCCCCc-eEEEEECCeECccCC--CEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCC
Confidence 344666788899999999999998876 799999999987533 3333222 2 79999999999999999999999
Q ss_pred CCcceeeEEEE
Q psy535 136 GTQGSSGQMEV 146 (460)
Q Consensus 136 g~~~~~~~~~v 146 (460)
|.......+.|
T Consensus 198 g~~~~~~~l~V 208 (212)
T 2r15_A 198 GSETSDFTVSV 208 (212)
T ss_dssp EEEEEEEEEEE
T ss_pred CcEEEEEEEEE
Confidence 88654444443
No 194
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.81 E-value=1.1e-19 Score=151.25 Aligned_cols=138 Identities=18% Similarity=0.250 Sum_probs=107.3
Q ss_pred cccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535 7 SLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 7 ~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
...+|+.+.. +++|.|.+++.+|+|.|+|.|.+..+.. ...+.|.|..+|.+...+....+.+|+.++|.|.+
T Consensus 67 ~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~ 145 (214)
T 3jz7_A 67 DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEP 145 (214)
T ss_dssp GGTTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEEC
T ss_pred ccccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeeecceecCCcEEEEecC
Confidence 4467888865 4689999999999999999999987765 77889999988887665655668889999999999
Q ss_pred -ecCCCCCeEEEeeCCe--ecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC
Q psy535 81 -KANPTFQYVTWTKDKR--LLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP 151 (460)
Q Consensus 81 -~~~~~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~ 151 (460)
.+.|.+ .+.|++++. .+.. .......++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..|
T Consensus 146 ~~g~p~~-~v~W~~~~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~~P 213 (214)
T 3jz7_A 146 KEGSLPL-QFEWQKLSDSQTMPT---PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD--QCMLRLDVVPP 213 (214)
T ss_dssp SBCCSSC-EEEEEECSTTCCCCG---GGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEECCBCC
T ss_pred CCCCCCC-EEEEEECCCCCccCc---cceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE--EEEEEEEEeCC
Confidence 677665 899999543 3321 11122345689999999999999999999999876 44555655544
No 195
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.81 E-value=8.2e-19 Score=146.84 Aligned_cols=175 Identities=15% Similarity=0.240 Sum_probs=119.1
Q ss_pred cceeeeecceeeEEEEEEEecCCC----CCeEEEeeCCeecCc-------------cccccEEEeec------CeEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPT----FQYVTWTKDKRLLEP-------------YQTKDIVVMQN------GSLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~~~~~~-------------~~~~~~~~~~~------~~l~i~~ 118 (460)
.+....+.+|++++|.|.+.+.|. ...+.|+|++..+.. ....+.....+ .+|.|.+
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 86 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD 86 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence 345566788999999999877653 237999997533211 11234444322 3799999
Q ss_pred cCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC
Q psy535 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~ 198 (460)
++.+|+|.|+|.+.+ .+. ....+.|.|..++......... .+..|+.++|.|.+ .|.|.|.+.|+++++..+.
T Consensus 87 v~~~D~G~Y~C~~~~-~~~--~~~~~~l~V~~~~~~~~~~~~~-~~~~g~~v~L~C~~---~g~P~p~i~W~~~~g~~~~ 159 (222)
T 3sbw_C 87 VKLQDAGVYRCMISY-GGA--DYKRITVKVNAPYNKINQRILV-VDPVTSEHELTCQA---EGYPKAEVIWTSSDHQVLS 159 (222)
T ss_dssp CCGGGCEEEEEEEES-SSE--EEEEEEEEEEBCCCCCEEEEEE-EETTTTEEEEEEEE---EEBSCCEEEEEETTCCEEC
T ss_pred cccccCeEEEEEEEe-CCC--ceeEEEEEEECCCCCCCceeee-eecCCCcEEEEEEe---cCCCCCeEEEEECCCceec
Confidence 999999999999998 443 3445667777666533222111 45789999999999 6789999999997565554
Q ss_pred cccEE-E---ecceEE---EccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 199 KNRVK-I---VGGNIT---IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 199 ~~~~~-~---~~~~l~---i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
..... . .++.+. ...+...|.|.|+|.|.|..|.......+.|..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 160 GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp CEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred CccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence 32211 1 122222 224566889999999999999988888887764
No 196
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.81 E-value=5.3e-19 Score=144.65 Aligned_cols=122 Identities=25% Similarity=0.339 Sum_probs=100.4
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK 95 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~ 95 (460)
+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|. .+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++
T Consensus 64 ~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~ 141 (194)
T 2a38_A 64 KLTIPAVTKANSGRYSLKATNGSGQA-TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP-VVKFYRDG 141 (194)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCC-EEEEEETT
T ss_pred EEEECCCCcccCEEEEEEEEcCCceE-eEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCC-eEEEEECC
Confidence 89999999999999999999988764 566778887 56677777777888999999999999998776 79999999
Q ss_pred eecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 96 RLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 96 ~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
..+.. ..++....++ .|.|.++..+|+|.|+|.|.|..|....+..+
T Consensus 142 ~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 191 (194)
T 2a38_A 142 AEIQS--SLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191 (194)
T ss_dssp EECCC--SSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EECCC--CCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEE
Confidence 98864 2344444443 69999999999999999999999876544433
No 197
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.81 E-value=1.8e-18 Score=142.03 Aligned_cols=164 Identities=13% Similarity=0.215 Sum_probs=113.0
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccccc-EE-EeecCeEEEeecCCCCCeEEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IV-VMQNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~-~~~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
.+|.+...|. ..+.+|++++|.|.+.+ +. +.+.|+|+|..+....... .. ...++.|.|.+++.+|+|.|+|.+.
T Consensus 7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 7 RKPSLLAHPG-PLVKSEETVILQCWSDV-MF-EHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEESS-CC-SEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEEEcC-CccCCCCcEEEEEeccC-CC-CEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 4566766676 66789999999999974 43 4799999988664211100 00 1234579999999999999999998
Q ss_pred cCCC---CcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc-cEEE-
Q psy535 133 NAHG---TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKI- 204 (460)
Q Consensus 133 ~~~g---~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~-~~~~- 204 (460)
+... ....+..+.|.|.. +|.+...+.. .+..|+.++|.|.+ .+ +.+.+.|++++....... ....
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~--~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~ 157 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGP--TVLAGENVTLSCSS---RS-SYDMYHLSREGEAHERRLPAGPKV 157 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCS--EECTTCEEEEEEEE---SS-CCSEEEEEETTCSSCEEEECEEEE
T ss_pred cCCCCccccCCCCCEEEEeeccCCCCceecCCCC--ccCCCCeEEEEEeC---CC-CCceEEEEECCcccCccccccccc
Confidence 6532 22234455566553 4666665652 57899999999998 44 568999999654332211 1111
Q ss_pred ---ecceEEEccccceeceEEEEEEecc
Q psy535 205 ---VGGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 205 ---~~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
....|.|.++. |+|.|+|.|.+.
T Consensus 158 ~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 158 NGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp TTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred CCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 14578999998 999999999865
No 198
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.80 E-value=1.1e-18 Score=144.89 Aligned_cols=132 Identities=25% Similarity=0.448 Sum_probs=101.9
Q ss_pred eEEEeec-CCCCCeeEEEEEEeCCCCcceeeeEEEEecC-------CeeEEcceeeeecceeeEEEEEEEecCCCCCeEE
Q psy535 19 TLVINPV-GSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-------AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVT 90 (460)
Q Consensus 19 ~L~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~ 90 (460)
.|.|.++ +.+|+|.|+|.|.|..|.. ...+.|.|..+ |.+...|....+.+|+++.|.|.+.+.|.+ .+.
T Consensus 64 ~L~i~~v~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~ 141 (212)
T 2yd6_A 64 VLRIQPLRTPRDEAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP-EIT 141 (212)
T ss_dssp EEEECSCCTTTTCEEEEEEEEETTEEE-EEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEE
T ss_pred EEEEeccCCCCCCeEEEEEEEcCCCcE-EEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC-eEE
Confidence 6999999 5999999999999988874 67788888753 567777777788899999999999998776 799
Q ss_pred EeeCCeecCccc-cccEEEeec---CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535 91 WTKDKRLLEPYQ-TKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153 (460)
Q Consensus 91 W~~~~~~~~~~~-~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~ 153 (460)
|++++..+.... ..++..... +.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.+..++.
T Consensus 142 W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~s~~a~l~~~~~~~ 207 (212)
T 2yd6_A 142 WFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR-YSAPANLYVRGTKH 207 (212)
T ss_dssp EEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC---
T ss_pred EEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcc-ccccccEEEEeccc
Confidence 999999886432 234433332 579999999999999999999999876 34455666665554
No 199
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.80 E-value=4.8e-19 Score=148.63 Aligned_cols=172 Identities=12% Similarity=0.181 Sum_probs=112.4
Q ss_pred eeeecceeeEEEEEEEecCCCC--CeEEEeeCCeec-----------Cc----cccccEEEee------cCeEEEeecCC
Q psy535 65 VQYLPFRLQGVVQCHIKANPTF--QYVTWTKDKRLL-----------EP----YQTKDIVVMQ------NGSLLFTRVNQ 121 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~-----------~~----~~~~~~~~~~------~~~l~i~~~~~ 121 (460)
...+.+|++++|.|.+.+.+.+ ..|.|+|++... .. ....+..... +.+|.|.+++.
T Consensus 13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~ 92 (226)
T 4f80_A 13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA 92 (226)
T ss_dssp CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence 3567889999999999775443 369999876421 11 0112222222 23699999999
Q ss_pred CCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc
Q psy535 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR 201 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~ 201 (460)
+|+|.|+|.|.|..|.. ...+.+.+..++.. .+.. ..+..|..+.|.|.+. .+.|.|.+.|+++++..+....
T Consensus 93 ~D~G~Y~C~a~n~~~~~--~~~v~~~~~~~~~~--~~~~-~~~~~g~~v~l~c~~~--g~~P~p~i~W~k~~~~~~~~~~ 165 (226)
T 4f80_A 93 SDSGKYLCYFQDGDFYE--KALVELKVAALGSD--LHVD-VKGYKDGGIHLECRST--GWYPQPQIQWSNNKGENIPTVE 165 (226)
T ss_dssp GGCEEEEEEEEETTEEE--EEEEEEEEEBCCCC--CEEE-EEEEETTEEEEEEEEE--EEBSCCEEEEECTTSCBCCCEE
T ss_pred HHCeeEEEEEECCCcEE--EEEEEEeeccceec--ccce-eeeccCCceeeEEEec--cCCCCCEEEEEECCceEcCCCc
Confidence 99999999999977654 34455544333221 2222 2567899999999983 3469999999987766654332
Q ss_pred EE--E-ecce---EEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535 202 VK--I-VGGN---ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243 (460)
Q Consensus 202 ~~--~-~~~~---l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~ 243 (460)
.. . .++. +.+..+...|.|.|+|.|.|..|.......|.|.+
T Consensus 166 ~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 166 APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence 11 1 1222 33446778899999999999999988888777654
No 200
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.80 E-value=9.8e-19 Score=145.90 Aligned_cols=177 Identities=18% Similarity=0.276 Sum_probs=121.9
Q ss_pred cceeeeecceeeEEEEEEEecCCCC--CeEEEeeCCeecCcc----------------ccccEEEe------ecCeEEEe
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKDKRLLEPY----------------QTKDIVVM------QNGSLLFT 117 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~----------------~~~~~~~~------~~~~l~i~ 117 (460)
.|....+.+|++++|.|.+.+.+.+ ..|+|+|++..+... ...++... .+++|.|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 84 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR 84 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence 4566778899999999999887654 248999977544211 11122111 12469999
Q ss_pred ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC
Q psy535 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL 197 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~ 197 (460)
+++.+|+|.|+|.+.+..+..... ...+.+..++.....+.....+..|..+.+.|.+ .+.|.|.+.|++++....
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---~g~p~p~i~W~~~~~~~~ 160 (218)
T 4frw_A 85 NAVQADEGEYECRVSTFPAGSFQA-RLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA---EGSPAPSVTWDTEVKGTT 160 (218)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEE-EEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEE---EEBSCCEEEEEESSCCEE
T ss_pred eccHHHCCceeEEEEeccCceeee-EEEEEEeeeccceeeeeeeeeeeeccccceeeec---cCCcCceEEEEECCcccc
Confidence 999999999999998766554332 3333334344333333333367789999999998 788999999999655443
Q ss_pred CcccEEE-----ecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 198 PKNRVKI-----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 198 ~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
....... ..+.|.|..+...|.|.|+|.|.|..|.......+.+.
T Consensus 161 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 161 SSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp EEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred cCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 2222221 23469999999999999999999999987666665553
No 201
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Probab=99.80 E-value=1.1e-17 Score=135.54 Aligned_cols=175 Identities=18% Similarity=0.325 Sum_probs=125.2
Q ss_pred CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535 245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 323 (460)
Q Consensus 245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n 323 (460)
+|.+|.++.. .....++.|+|.++.. .+.+|.+.++... ..+..... ......+.|.+|.+++.|.|++.|.|
T Consensus 6 ~p~~P~~l~~~~~~~~sv~l~W~~p~~----~i~~Y~v~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~~ 79 (186)
T 1qr4_A 6 DLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPS-GKKNEMEI-PVDSTSFILRGLDAGTEYTISLVAEK 79 (186)
T ss_dssp --CCCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECTT-CCEEEEEE-CTTCSEEEEESCCSSCEEEEEEEEES
T ss_pred CCcCCCceEEEecCCCEEEEEEeCCCC----CccEEEEEEEeCC-CCeeEEEC-CCCCCEEEECCCCCCCEEEEEEEEEc
Confidence 5777887764 4567799999997631 3468999888543 33333332 23567899999999999999999999
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535 324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402 (460)
Q Consensus 324 ~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (460)
..|.+.. ..+.+.+ .|.+|.++.+...+ +++.|+|++|. +.+.+|.|+|+..+...
T Consensus 80 ~~~~s~~-~~~~~~t---~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~~---------------- 136 (186)
T 1qr4_A 80 GRHKSKP-TTIKGST---VVGSPKGISFSDITENSATVSWTPPR---SRVDSYRVSYVPITGGT---------------- 136 (186)
T ss_dssp SSCBCCC-EEEEEEC---CCCCCSCEEEESCCSSCEEEEECCCS---SCCSEEEEEEEETTCCC----------------
T ss_pred CCccCCC-EEEEEEC---CCCCCCccEEEEeCCCEEEEEEECCC---CcccEEEEEEEeCCCCC----------------
Confidence 7665532 2333433 38889999998776 69999999884 56999999999754200
Q ss_pred cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
..... .....+++.|.+|.|++.|.|+|+|.|..|.|++.. ..+.|
T Consensus 137 -------~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~-~~~~T 182 (186)
T 1qr4_A 137 -------PNVVT---VDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPIS-GILKT 182 (186)
T ss_dssp -------CEEEE---EETTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEEC
T ss_pred -------ceEEE---cCCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCEE-EEEEe
Confidence 00011 113568899999999999999999999999887643 34444
No 202
>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=148.65 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=105.9
Q ss_pred eeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCC-CCCCcceEEEee
Q psy535 276 KQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVTEV 354 (460)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~-P~~p~~~~~~~~ 354 (460)
+..|.+.+++.... +..... ......+.+.+|.+++.|.|++.|.|..|.+..+..+.+.+.... |.+|..+.....
T Consensus 22 Vt~Y~~~~~~~~~~-~~~~~~-~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~~~~~~~ 99 (232)
T 4go6_B 22 VTHYFLPPDDAVPS-DDDLGT-VPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKS 99 (232)
T ss_dssp ECEEECCCC--------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEEEEEEEE
T ss_pred EEEEEEEeeCCCCC-cEEEEE-CCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCeeeEEecC
Confidence 35666655443322 222221 224567999999999999999999999999998888888765443 455555555444
Q ss_pred cceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceE-------EE
Q psy535 355 NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQI-------TI 427 (460)
Q Consensus 355 ~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i 427 (460)
.+++.|+|.+|...+++|.+|.|+|+..+.-. .............|..+.........+ .+
T Consensus 100 ~~sv~l~W~~P~~~~G~i~~Y~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (232)
T 4go6_B 100 PDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQA------------GGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAH 167 (232)
T ss_dssp TTEEEEEEECCSCCSSCCCEEEEEEEEC-------------------------CCEEEEEEEEESSSEEEEEHHHHTTBC
T ss_pred CCEEEEEEeCCCCCCCceeeEEEEEEECCCCC------------cceeeeccCCceeeEEEEeccCceEEEEccccEEee
Confidence 57999999999888889999999999754310 000111112333455444333333333 35
Q ss_pred CCCCcCceEEEEEEEeecCCCCCCCceeEee
Q psy535 428 NRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458 (460)
Q Consensus 428 ~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~ 458 (460)
.+|.+++.|.|||+|+|.+|.|++|++..+.
T Consensus 168 ~~L~~~t~Y~frV~A~N~~G~Gp~S~v~t~~ 198 (232)
T 4go6_B 168 IDYTTKPAIIFRIAARNEKGYGPATQVRWLQ 198 (232)
T ss_dssp BEESSSEEEEEEEEEECSSCBCCCEEEEEEC
T ss_pred ecCccCCceEEEEEEECCCcCCCCcccEEec
Confidence 6789999999999999999999999865543
No 203
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.79 E-value=1.2e-18 Score=144.81 Aligned_cols=169 Identities=14% Similarity=0.210 Sum_probs=114.7
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eec----------CccccccEEEeecC---eEEEeecCCCC
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLL----------EPYQTKDIVVMQNG---SLLFTRVNQNH 123 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~----------~~~~~~~~~~~~~~---~l~i~~~~~~d 123 (460)
+...|....+.+|++++|.|.+.+.|.+ .|.|+|++ ..+ ......++.....+ +|.|.+++.+|
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCC-CEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhh
Confidence 3445777888999999999999988765 69999843 211 11112344444332 79999999999
Q ss_pred CeEEEEEEEcCCCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCc
Q psy535 124 QGRYTCTPYNAHGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPK 199 (460)
Q Consensus 124 ~G~y~C~~~~~~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~ 199 (460)
+|.|+|.+.|..+.... ....|.|.. +|.+...+... .+..|+.++|.|.+. ...|.+ .+.|++++. .+..
T Consensus 83 ~G~Y~C~~~~~~~~~~~-~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~~~l~C~~~--g~~p~~~~v~W~k~g~-~~~~ 157 (213)
T 3d9a_L 83 FGMYFCQQSNSWPYTFG-GGTKLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLN--NFYPKDINVKWKIDGS-ERQN 157 (213)
T ss_dssp CEEEEEEECSSSSCEEC-CCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEE--EEBSSCCEEEEEETTE-EECT
T ss_pred CEEEEEeeecCCcceeC-CCEEEEEecCCCCceeEeECCCh-hhcCCCcEEEEEEEe--eecCCceEEEEEcCCC-cCcc
Confidence 99999999987664322 223344443 67666644433 234688999999983 225655 899999543 3332
Q ss_pred c-cEE-----------EecceEEEccccceeceEEEEEEeccccee
Q psy535 200 N-RVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 200 ~-~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
. ... .....|.|.++...|.|.|+|.|.|.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 158 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp TEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred eeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 2 111 112379999999999999999999976554
No 204
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=99.79 E-value=1.5e-19 Score=180.63 Aligned_cols=228 Identities=15% Similarity=0.173 Sum_probs=165.2
Q ss_pred ceEEEccccceeceEEEEEE-ecccce----eeee--eEEEEecCCCCCCCceeee-eecceEEEEeecCCCCCCCceee
Q psy535 207 GNITIEGLRRVDFGYYECVV-SNEVAT----IVQA--AQLVVEGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQN 278 (460)
Q Consensus 207 ~~l~i~~~~~~~~g~y~C~a-~n~~g~----~~~~--~~l~v~~~~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~ 278 (460)
..+.+.++.+...+.|+..| .|..|. ...+ ..+.....+|.+|..+... ....++.|+|.|+...++. +.+
T Consensus 549 ~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~-I~~ 627 (897)
T 2dtg_E 549 PGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGN-ITH 627 (897)
T ss_dssp CEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSSS-CSE
T ss_pred cceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCCC-eeE
Confidence 46888999999999999999 887775 2222 2223333456777777653 4557999999998666665 478
Q ss_pred EEEEEEecCCC-----------------------------------------------------------------Ceee
Q psy535 279 YVIWYREQGNK-----------------------------------------------------------------DWLP 293 (460)
Q Consensus 279 ~~~~~~~~~~~-----------------------------------------------------------------~~~~ 293 (460)
|.+.|+..... .|..
T Consensus 628 Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~ 707 (897)
T 2dtg_E 628 YLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED 707 (897)
T ss_dssp EECCEEEECCCCSCTTCSSSCSCCCCCC----------------------------------------------------
T ss_pred EEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeEEE
Confidence 99987653320 0110
Q ss_pred e-----e--------------------------ccCCCCceEEEccCccCccEEEEEEEEcCCCCCCC---CCcEEEEcc
Q psy535 294 I-----P--------------------------VTPPGSTQITINRLTPATTYEFQVVGKNELGDGML---SNIVVVKTK 339 (460)
Q Consensus 294 ~-----~--------------------------~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~---s~~~~~~~~ 339 (460)
. . ........+.|.+|.+++.|.|++.|.|..|.+.. +..+.+++.
T Consensus 708 ~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~ 787 (897)
T 2dtg_E 708 YLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM 787 (897)
T ss_dssp ----------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECC
T ss_pred ccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEecc
Confidence 0 0 00013368999999999999999999999997653 566777776
Q ss_pred C--CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeee
Q psy535 340 G--PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415 (460)
Q Consensus 340 ~--~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (460)
. .+|.+|.++.+...+ +++.|+|++|...++.|.+|.|+|+..+. |.. .+. .
T Consensus 788 ~~~~~p~~P~~l~~~~~~~~sv~LsW~~P~~~nG~I~~Y~V~y~~~~~~~~~-----------------------~~~-~ 843 (897)
T 2dtg_E 788 PEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELH-----------------------LCD-T 843 (897)
T ss_dssp CCCCCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCC-----------------------CCC-C
T ss_pred CccCCCCCCcceEEEeCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCcceE-----------------------EEE-e
Confidence 5 457889998887766 58999999998888899999999987542 100 000 0
Q ss_pred ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
.......+.++|.+|.|+ .|.|+|+|.|.+|.|++|+++.++|+
T Consensus 844 ~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v~~~T~ 887 (897)
T 2dtg_E 844 RKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVT 887 (897)
T ss_dssp SSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCCCEECCC
T ss_pred eeeecccCcEEECCCCCC-cEEEEEEEEeCCcccCCCCCEEEEeC
Confidence 011235678899999999 69999999999999999999999884
No 205
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.79 E-value=1.3e-18 Score=144.56 Aligned_cols=142 Identities=22% Similarity=0.343 Sum_probs=110.9
Q ss_pred cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEecCCeeEEcceeeeecceeeEEEEEE-EecCC
Q psy535 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCH-IKANP 84 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~~ 84 (460)
..++|+.+.. ++|.|.+++.+|+|.|+|.|.+..|. .....+.|.|..+|.+...+....+.+|++++|.|. +.+.|
T Consensus 55 ~~~~r~~~~~-~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p 133 (212)
T 1f97_A 55 PYADRVTFSS-SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP 133 (212)
T ss_dssp GGTTTEEEET-TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBS
T ss_pred cccCcEEeec-eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcC
Confidence 4567888754 89999999999999999999998763 235678888988887765555567888999999999 67777
Q ss_pred CCCeEEEeeCCe-ecCcccc-------ccEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535 85 TFQYVTWTKDKR-LLEPYQT-------KDIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK 150 (460)
Q Consensus 85 ~~~~v~W~~~~~-~~~~~~~-------~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~ 150 (460)
.+ .+.|++++. .+..... .++.. ...+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|..
T Consensus 134 ~~-~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 134 PS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CC-EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred CC-EEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 66 799999999 7754221 12222 235679999999999999999999999987667777777754
No 206
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.79 E-value=9.6e-19 Score=143.48 Aligned_cols=138 Identities=22% Similarity=0.331 Sum_probs=105.7
Q ss_pred ccCcccceEEEee--CC--eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE-----cceeeeecceeeE
Q psy535 4 KVGSLETRVVIKK--DG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-----TPTVQYLPFRLQG 74 (460)
Q Consensus 4 ~~~~~~~r~~~~~--~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-----~~~~~~~~~g~~~ 74 (460)
.+...+.|+.+.. ++ +|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..+|.+.. .+....+.+|+.+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~ 122 (197)
T 2j8h_A 44 EIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122 (197)
T ss_dssp ECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEE-EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCC
T ss_pred ECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCce-eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEE
Confidence 3444456777654 34 89999999999999999999988775 7788888887665532 2355667889999
Q ss_pred EEEEEEecCCCCCeEEEeeCCeecCccccccEEEe---ecCeEEEee-cCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM---QNGSLLFTR-VNQNHQGRYTCTPYNAHGTQGSSGQME 145 (460)
Q Consensus 75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~-~~~~d~G~y~C~~~~~~g~~~~~~~~~ 145 (460)
.|.|.+.+.|.+ .+.|++++..+... .++... ..+.|.|.+ +..+|+|.|+|.|.|..|....+..+.
T Consensus 123 ~l~C~~~g~p~p-~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~ 194 (197)
T 2j8h_A 123 SIKIPFSGKPDP-VITWQKGQDLIDNN--GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194 (197)
T ss_dssp EEEEEEEEESCC-EEEEEESSCEECSS--SSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEecCCC-cEEEEECCEEeecC--CCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEE
Confidence 999999998876 89999999988632 333332 224799999 999999999999999998864444333
No 207
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.79 E-value=3.2e-18 Score=136.95 Aligned_cols=161 Identities=14% Similarity=0.234 Sum_probs=113.0
Q ss_pred ceeeeecceeeEEEEEEEec-CCCCCeEEEee--CCeecCc--------cccccEEEeecCeEEEeecCCCCCeEEEEEE
Q psy535 63 PTVQYLPFRLQGVVQCHIKA-NPTFQYVTWTK--DKRLLEP--------YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~-~~~~~~v~W~~--~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 131 (460)
+......+|++++|.|.... ..+.+.|.|++ ++..+.. ....++.+..+++|.|.+++.+|+|.|+|.+
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~ 85 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence 34456778999999995432 12334799999 8876621 1346777788899999999999999999999
Q ss_pred EcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEE
Q psy535 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITI 211 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i 211 (460)
.|..|.......+.|.|..+.. .|.. . ..+..++|.|.+ .+.|.+.+.|++++. .+. .....+.+
T Consensus 86 ~n~~g~~~~~~~~~L~V~~~~~---~P~i--~-~~~~~v~L~C~~---~~~p~~~~~W~~~g~-~l~-----~~~~~i~~ 150 (182)
T 1hnf_A 86 YDTKGKNVLEKIFDLKIQERVS---KPKI--S-WTCINTTLTCEV---MNGTDPELNLYQDGK-HLK-----LSQRVITH 150 (182)
T ss_dssp EETTSCEEEEEEEEEEEECCCC---CCEE--E-EETTTTEEEEEC---SSCSSCEEEEEESSC-EEE-----EESSCEEE
T ss_pred EeCCCceeEEEEEEEEEcCcCC---CCEE--E-EccCcEEEEeEc---cCCCCCEEEEEECCE-ECC-----CCCcEEEE
Confidence 9988876555667777765421 1111 1 123368999998 677889999999554 331 12233443
Q ss_pred ccccceeceEEEEEEecccceeeeeeEE
Q psy535 212 EGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 212 ~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
.. ...|.|.|+|.|.|..+.......+
T Consensus 151 ~~-~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 151 KW-TTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp EC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred ec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence 32 4678999999999999987766554
No 208
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.79 E-value=4.7e-19 Score=148.31 Aligned_cols=173 Identities=20% Similarity=0.366 Sum_probs=119.7
Q ss_pred eeeecceeeEEEEEEEecCCC----CCeEEEeeCCeec-----------CccccccEEEee------cCeEEEeecCCCC
Q psy535 65 VQYLPFRLQGVVQCHIKANPT----FQYVTWTKDKRLL-----------EPYQTKDIVVMQ------NGSLLFTRVNQNH 123 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~~~~-----------~~~~~~~~~~~~------~~~l~i~~~~~~d 123 (460)
...+.+|++++|.|.+.+.+. ...+.|++++... .+....+..... +.+|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 345778999999999987653 2479999976443 111223444333 4679999999999
Q ss_pred CeEEEEEEEcCCCCcceeeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc
Q psy535 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN 200 (460)
Q Consensus 124 ~G~y~C~~~~~~g~~~~~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~ 200 (460)
+|.|+|.+.+.. .. +..+.|.|..+ |.+...+.. .+..|+.++|.|.+. .+.|.+.+.|+++++..+...
T Consensus 84 ~G~Y~C~~~~~~-~~--~~~~~l~V~~~~~~p~i~~~~~~--~v~~G~~~~l~C~~~--~g~P~~~v~W~~~~~~~~~~~ 156 (222)
T 4i0k_A 84 EGSYTCFVSIQD-FD--SAAVSLQVAAPYSKPSMTLEPNK--DLRPGNMVTITCSSY--QGYPEAEVFWKDGQGVPLTGN 156 (222)
T ss_dssp CSCEEEEEEECC-CC--CCCCCCCCCBCCCCCEEECCC-------CCSEEEEEEEEE--EEBSCCEEEEECTTSCBCCSE
T ss_pred CEEEEEEEEeCC-Cc--eEEEEEEEEcCCCCCcEEeCCCc--eecCCceEEEEEecc--cccCCCeEEEEcCCCccCCCC
Confidence 999999999753 22 23344444443 555544432 567899999999984 578889999998666555432
Q ss_pred c-EEE---ecc---eEEEccccceeceEEEEEEecccceeeeeeEEEEecC
Q psy535 201 R-VKI---VGG---NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244 (460)
Q Consensus 201 ~-~~~---~~~---~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~ 244 (460)
. ... ..+ .|.|.++...|.|.|+|.|.|..|.......|.|..+
T Consensus 157 ~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 207 (222)
T 4i0k_A 157 VTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ 207 (222)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred cceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence 1 111 122 2788899999999999999999999988888888653
No 209
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.79 E-value=3.4e-19 Score=142.66 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=92.8
Q ss_pred cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC
Q psy535 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT 85 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 85 (460)
..++|+++..+|+|.|.+++.+|+|.|+|.|.|..|.. ....+.|.|..++. .|.. ...+..++|.|.+.+.|+
T Consensus 50 ~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~---~p~i--~~~~~~v~L~C~~~g~p~ 124 (176)
T 1hng_A 50 LKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS---KPMI--YWECSNATLTCEVLEGTD 124 (176)
T ss_dssp ESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCC---CCEE--EEETTTTEEEEECSSCSS
T ss_pred CCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCC---CCEE--EecCCcEEEEEEecCCCC
Confidence 45789999889999999999999999999999988874 35567788876432 1111 112345899999999887
Q ss_pred CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535 86 FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG 142 (460)
Q Consensus 86 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~ 142 (460)
+ .|+|+++|..+... ..+.|.++..+|+|.|+|.|.|..|......
T Consensus 125 p-~i~W~~~g~~l~~~----------~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~ 170 (176)
T 1hng_A 125 V-ELKLYQGKEHLRSL----------RQKTMSYQWTNLRAPFKCKAVNRVSQESEME 170 (176)
T ss_dssp C-EEEEEETTEEEEEE----------SSSEEEEECSCCSSCEEEEEEETTEEEEEEE
T ss_pred c-EEEEEECCEECCCC----------CcEEEEEEEccCCeEEEEEEEecCCCceecc
Confidence 5 89999999887531 1255668889999999999999998765443
No 210
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}
Probab=99.79 E-value=4.5e-18 Score=154.95 Aligned_cols=264 Identities=16% Similarity=0.213 Sum_probs=171.0
Q ss_pred eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccce--eceEEEEEEecccce
Q psy535 155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRV--DFGYYECVVSNEVAT 232 (460)
Q Consensus 155 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~--~~g~y~C~a~n~~g~ 232 (460)
.+.|... .+..|.++++.|.+. . ....... +.......++......+.+.++... ....|.|....
T Consensus 202 ~ifP~~~-vv~~GS~vt~~Ci~~---~---~~~~~~l-~~~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~~---- 269 (483)
T 3e0g_A 202 KVFPQDK-VILVGSDITFCCVSQ---E---KVLSALI-GHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTED---- 269 (483)
T ss_dssp CEESCSE-EEETTCCEEEEECCS---S---CEEEEES-SSCCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEESS----
T ss_pred EEeccCC-EEeCCCCEEEEEEeC---c---cccceec-CcccceeEEecCCEEEEEEeCCCCccCccceEEEecCC----
Confidence 3445555 578999999999872 1 1233333 2211111111111234666666542 23468998632
Q ss_pred eeeeeEEEEecCCCCCCCceeeee-ecceEEEEeecCCCCCC--CceeeEEEEEEecCCCCeeeeecc---CCCCceEEE
Q psy535 233 IVQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGP--DLKQNYVIWYREQGNKDWLPIPVT---PPGSTQITI 306 (460)
Q Consensus 233 ~~~~~~l~v~~~~p~~p~~~~~~~-~~~~~~l~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i 306 (460)
......+.+. .||.+|.++.+.. ....+.++|.|+.+.+. +....|.+.|+..+.. ...... ......+.+
T Consensus 270 ~~~g~~l~vg-~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~~--~~C~~~~~~~~~~~~C~~ 346 (483)
T 3e0g_A 270 NIFGTVIFAG-YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKY--VRLKRAEAPTNESYQLLF 346 (483)
T ss_dssp CEEEEEEEEE-CCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCCE--EEECCCSSCSCSCEEEEE
T ss_pred cccceEEECc-CCCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCCC--ccccCCcccCCCEEEEEE
Confidence 2233345554 5788999888654 34689999998766542 2236899988754321 111111 123457889
Q ss_pred ccCccCccEEEEEEEEcCCCCCCCCCcEEEEcc-CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC
Q psy535 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK-GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS 384 (460)
Q Consensus 307 ~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~-~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~ 384 (460)
..+.+...|.|+|.|.|..|.+.. . +.+... ...|.||.++.+.... +++.|+|++|...++.+..|+|+|+..+.
T Consensus 347 ~~l~~~t~Y~f~V~A~N~lG~~~S-~-~~~~~~~~VkP~PP~nl~v~~~~stsl~LsW~~P~~~~~~~L~YeVrYr~~~~ 424 (483)
T 3e0g_A 347 QMLPNQEIYNFTLNAHNPLGRSQS-T-ILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNS 424 (483)
T ss_dssp ECCTTCCCEEEEEEEECSSCEEEE-E-EEECGGGGBCCCCCEEEEECCSSSSSCCEEEECCSCCTTSBCCCEEEEECSSS
T ss_pred ccCCCCcEEEEEEEEEeCCCCccc-c-eEEEeccccCCCCCeeeEEEEecCCeEEEEECCCCCCCCceEEEEEEEEECCC
Confidence 999999999999999999997653 2 444322 2458999999998655 68999999997666678999999997653
Q ss_pred eeeeccccCCCCcccccccceecCceeeeeeccC--CCCcceEEECCCCcCceEEEEEEEeecCCC---CCCCceeEeec
Q psy535 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT--PPGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKT 459 (460)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~---s~~s~~~~~~T 459 (460)
.. .|..+... ......+.+.+|.|++.|.|||+|. ..|. |+||.++.++|
T Consensus 425 ~~------------------------~~~~vsv~~~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T 479 (483)
T 3e0g_A 425 VQ------------------------EQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLT 479 (483)
T ss_dssp CC------------------------CEEECCCBCCSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCC
T ss_pred CC------------------------ceEEEEEeccCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeEC
Confidence 10 11111111 1123467899999999999999999 6675 78888888887
Q ss_pred C
Q psy535 460 K 460 (460)
Q Consensus 460 ~ 460 (460)
+
T Consensus 480 ~ 480 (483)
T 3e0g_A 480 T 480 (483)
T ss_dssp C
T ss_pred C
Confidence 4
No 211
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=142.35 Aligned_cols=139 Identities=21% Similarity=0.344 Sum_probs=107.5
Q ss_pred ccCcccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE---cceeeeecceeeEEEE
Q psy535 4 KVGSLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF---TPTVQYLPFRLQGVVQ 77 (460)
Q Consensus 4 ~~~~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~---~~~~~~~~~g~~~~l~ 77 (460)
.....+.++.+..++ +|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..+|.+.. .+....+.+|+.+.|.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~ 124 (197)
T 3lcy_A 46 KELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEV-ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124 (197)
T ss_dssp EEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEE
T ss_pred EECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCce-eEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEE
Confidence 334456778887776 89999999999999999999988764 6677888877665532 2344567789999999
Q ss_pred EEEecCCCCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCC-CCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQ-NHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 78 C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~-~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
|.+.+.|.+ .+.|++++..+.. ..++..... +.|.|.++.. +|+|.|+|.|.|..|..... +.|.|
T Consensus 125 C~~~~~p~p-~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V 194 (197)
T 3lcy_A 125 VMYIGRPVP-AMTWFHGQKLLQN--SENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI--LDVEI 194 (197)
T ss_dssp EEEEEESCC-EEEEEETTEECCC--CSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEE--EEEEE
T ss_pred EEEeeeeCC-eeEEeECCEECCC--CCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEE--EEEEE
Confidence 999998876 7999999998864 234444333 4699999985 89999999999999886444 44444
No 212
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.79 E-value=2.6e-18 Score=142.73 Aligned_cols=164 Identities=17% Similarity=0.256 Sum_probs=112.3
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC----------ccccccEEEeecC---eEEEeecCCC
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE----------PYQTKDIVVMQNG---SLLFTRVNQN 122 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~~---~l~i~~~~~~ 122 (460)
.+...|....+.+|++++|.|.+.+.|.+ .+.|+|+. ..+. .....++.....+ +|.|.+++.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3nl4_L 3 VMTQTPASVSEPVGGTVTIKCQASQSISS-YLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECA 81 (213)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred cEEeCCCeEEEcCCCCEEEEEEecCCCCc-eEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChH
Confidence 45566777889999999999999988655 79999842 1110 0012344443332 6999999999
Q ss_pred CCeEEEEEEEcCCCC---cceeeEEEEEe-eCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCCeeEEEcCCCccC
Q psy535 123 HQGRYTCTPYNAHGT---QGSSGQMEVLV-RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKPTITWQRRDGVAL 197 (460)
Q Consensus 123 d~G~y~C~~~~~~g~---~~~~~~~~v~v-~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~~~~W~~~~~~~~ 197 (460)
|+|.|+|.|.|..+. ......+.|.. ..+|.+...+... .+..|+.++|.|.+ .+ .|.+.+.|++++. .+
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~l~C~~---~g~~P~~~v~W~k~g~-~~ 156 (213)
T 3nl4_L 82 DAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSA-DLVATGTVTIVCVA---NKYFPDVTVTWEVDGT-TQ 156 (213)
T ss_dssp GCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCH-HHHTTSEEEEEEEE---EEEBSCCEEEEEETTE-EC
T ss_pred HCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCch-hhccCCcEeEEEEE---ecccCCcEEEEEeCCc-cC
Confidence 999999999987653 11222333322 4456665544433 45679999999999 45 7889999999543 33
Q ss_pred Cccc------------EEEecceEEEccccceeceEEEEEEe
Q psy535 198 PKNR------------VKIVGGNITIEGLRRVDFGYYECVVS 227 (460)
Q Consensus 198 ~~~~------------~~~~~~~l~i~~~~~~~~g~y~C~a~ 227 (460)
.... .....+.|.|..+...|.|.|+|.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 157 TTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred CCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 3211 11123468899999999999999998
No 213
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.78 E-value=8e-18 Score=139.90 Aligned_cols=168 Identities=15% Similarity=0.208 Sum_probs=112.1
Q ss_pred cceeeeecceeeEEEEEEEecC------CCCCeEEEeeCCeec-----C----------ccccccEEEee-----cCeEE
Q psy535 62 TPTVQYLPFRLQGVVQCHIKAN------PTFQYVTWTKDKRLL-----E----------PYQTKDIVVMQ-----NGSLL 115 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~------~~~~~v~W~~~~~~~-----~----------~~~~~~~~~~~-----~~~l~ 115 (460)
.|....+.+|++++|.|.+.+. .+.+.+.|+|++... . .....++.... +.+|.
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 85 (214)
T 2zg1_A 6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS 85 (214)
T ss_dssp CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence 4666778899999999998754 134579999976521 0 11224555433 23799
Q ss_pred EeecCCCCCeEEEEEEEcCCCCcc--eeeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCC----CCCCe
Q psy535 116 FTRVNQNHQGRYTCTPYNAHGTQG--SSGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEG----TQKPT 186 (460)
Q Consensus 116 i~~~~~~d~G~y~C~~~~~~g~~~--~~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~p~~~ 186 (460)
|.+++.+|+|.|+|.+.+..+... .+..+.|.|..+ |.+.. +. .+..|+.++|.|.+ .+ .|.|.
T Consensus 86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~---~~~~G~~v~L~C~~---~~~~~~~p~p~ 158 (214)
T 2zg1_A 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE---PLESGRPTRLSCSL---PGSCEAGPPLT 158 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C---CCCTTCCEEEEEEC---TTCCSCSSCCE
T ss_pred EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc---cccCCCeEEEEEEe---ccCCCCCCCce
Confidence 999999999999999998653221 123455666553 33332 21 35689999999998 44 48899
Q ss_pred eEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535 187 ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
+.|++++..... ... ...+.|.|..+..+|.|.|+|.|.|..+.......
T Consensus 159 v~W~~~~~~~~~-~~~-~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~ 208 (214)
T 2zg1_A 159 FSWTGNALSPLD-PET-TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERT 208 (214)
T ss_dssp EEEESSTTSSSC-SSC-CCSSEEEECCCTTCCSCEEEEEEECC----CCEEE
T ss_pred EEEeCCCCccCC-CCc-eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEE
Confidence 999996543322 221 34567999999999999999999997655433333
No 214
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.78 E-value=1.5e-18 Score=146.30 Aligned_cols=163 Identities=12% Similarity=0.205 Sum_probs=112.5
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC-----------ccccccEE----------EeecCeEEEeecC
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE-----------PYQTKDIV----------VMQNGSLLFTRVN 120 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~-----------~~~~~~~~----------~~~~~~l~i~~~~ 120 (460)
.|....+.+|+++.|.|.+.+.+..+.+.|++++.... .....++. ...++.|.|.+++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~ 85 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ 85 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence 45667788999999999998877434799998654321 00112333 4555679999999
Q ss_pred CCCCeEEEEEEEcCC-CCcceeeEEEEEeeCCC---ceeeCCCcccccCCCCeE-EEEeeeeccCCCCCCeeEEEcCCCc
Q psy535 121 QNHQGRYTCTPYNAH-GTQGSSGQMEVLVRKPP---AFTIKPEAMYQRKVGESV-DMHCEAQEAEGTQKPTITWQRRDGV 195 (460)
Q Consensus 121 ~~d~G~y~C~~~~~~-g~~~~~~~~~v~v~~~p---~~~~~~~~~~~~~~g~~~-~l~C~~~~~~~~p~~~~~W~~~~~~ 195 (460)
.+|+|.|+|.+.+.. +. .+..+.|.|..+| .+...+... .+..|+.+ .|.|.+. .+.|.|.+.|++++..
T Consensus 86 ~~D~G~Y~C~~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~~-~~~~g~~~~~l~C~~~--~~~p~p~i~W~~~~~~ 160 (231)
T 2pet_A 86 VGDERDYVCVVRAGAAGT--AEATARLNVFAKPEATEVSPNKGTL-SVMEDSAQEIATCNSR--NGNPAPKITWYRNGQR 160 (231)
T ss_dssp GGGCEEEEEEEECGGGCE--EEEEEEEEEEBCCCCCEEEECCSSC-CTTCCSEEEEEEEEEE--EEBSCCEEEEEETTEE
T ss_pred cccCceEEEEEEecCCCc--eEEEEEEEEEecCCCcEEecCCcce-eecCCCceEEEEEEeE--CcccCCEEEEEECCcc
Confidence 999999999999876 44 3455666666554 344444433 56788887 9999984 5788999999995443
Q ss_pred cCCcc----cEEEec-------------ceEEEccccceeceEEEEEEecc
Q psy535 196 ALPKN----RVKIVG-------------GNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 196 ~~~~~----~~~~~~-------------~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
+.... +..+.. ..|.|......|.|.|+|.|.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 161 LEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp CCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred CccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 33222 222221 45777755666699999999994
No 215
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Probab=99.78 E-value=1.5e-16 Score=144.10 Aligned_cols=209 Identities=19% Similarity=0.251 Sum_probs=151.7
Q ss_pred ceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285 (460)
Q Consensus 207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~ 285 (460)
..+.+.++.....+.|++.|.|..|..... ...+.. .+.+|.++.. .....++.|+|.++.. . .+.+|.+.++.
T Consensus 58 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~~-~~~~p~~l~~~~~~~~si~l~W~~p~~--~-~~~~Y~v~~~~ 132 (368)
T 1fnf_A 58 SSCTFDNLSPGLEYNVSVYTVKDDKESVPI-SDTIIP-AVPPPTDLRFTNIGPDTMRVTWAPPPS--I-DLTNFLVRYSP 132 (368)
T ss_dssp CEEECCCCCTTSCEEEEEEEEETTEECCCE-EEEECC-CCCCCEEEEEESCCSSCEEEEEECCTT--C-CCSEEEEEEEE
T ss_pred CEEEECCCCCCCEEEEEEEEEcCCCccCce-eeeecC-CCcCCceeEEEEcCCCeEEEEeeCCCC--C-CCcEEEEEEEE
Confidence 467888999999999999999988764432 223332 2336666654 3467799999998732 2 24789999887
Q ss_pred cCCC-CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEec
Q psy535 286 QGNK-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQ 363 (460)
Q Consensus 286 ~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~ 363 (460)
.... .|...... .....+.+.+|.+++.|.|++.|.|..|.+.. +..... ..|.+|.++.+...+ +++.|+|+
T Consensus 133 ~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~---~~~~~~-~~~~~P~~l~~~~~~~~sv~l~W~ 207 (368)
T 1fnf_A 133 VKNEEDVAELSIS-PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP---LRGRQK-TGLDSPTGIDFSDITANSFTVHWI 207 (368)
T ss_dssp TTCTTCCEEEEEC-TTCCEEEECSCCTTCEEEEEEEEEETTEECCC---EEEEEE-CCCCCCEEEEEESCCSSEEEEEEE
T ss_pred CCCCCccEEEEcC-CCcceEEecCCCCCCEEEEEEEEEeCCCCCCC---eEeeec-CCCCCCCccEEEEccCCEEEEEEe
Confidence 5543 45544432 35678999999999999999999999986643 333332 236788899988766 69999999
Q ss_pred CCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEe
Q psy535 364 PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443 (460)
Q Consensus 364 ~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~ 443 (460)
+|. +.+.+|.|+|+..+.. +...+. ......+.+.|.+|.|++.|.|+|.|.
T Consensus 208 ~p~---~~i~~Y~v~~~~~~~~----------------------~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 259 (368)
T 1fnf_A 208 APR---ATITGYRIRHHPEHFS----------------------GRPRED---RVPHSRNSITLTNLTPGTEYVVSIVAL 259 (368)
T ss_dssp CCS---SCCSEEEEEEECSCCS----------------------SCCEEE---EEETTCCEEEEESCCTTCEEEEEEEEE
T ss_pred CCC---CCcCEEEEEEecCCCC----------------------CCccEE---EeCCCcCEEEECCCCCCCEEEEEEEEE
Confidence 973 6799999999975420 000011 112466789999999999999999999
Q ss_pred ecCCCCCCCc
Q psy535 444 NELGDGMLSN 453 (460)
Q Consensus 444 n~~G~s~~s~ 453 (460)
|..|.|+++.
T Consensus 260 n~~g~~~~~~ 269 (368)
T 1fnf_A 260 NGREESPLLI 269 (368)
T ss_dssp ETTEECCCEE
T ss_pred eCCccCCccc
Confidence 9999987764
No 216
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.78 E-value=4.8e-18 Score=140.72 Aligned_cols=164 Identities=10% Similarity=0.193 Sum_probs=110.9
Q ss_pred ceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec----------CccccccEEEeecC---eEEEeecCCCCCeEE
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL----------EPYQTKDIVVMQNG---SLLFTRVNQNHQGRY 127 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y 127 (460)
|....+.+|++++|.|.+.+.+.+ .+.|+|+ +..+ ......++.....+ .|.|.+++.+|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 85 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY 85 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCC-CEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence 777788999999999999988755 6999984 2221 01112344443322 799999999999999
Q ss_pred EEEEEcCCCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcc-cE
Q psy535 128 TCTPYNAHGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKN-RV 202 (460)
Q Consensus 128 ~C~~~~~~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~-~~ 202 (460)
+|.+.|..+... .....|.|.. +|.+...+... .+..|+.++|.|.+. ...|.+ .+.|++++ ..+... ..
T Consensus 86 ~C~~~~~~~~~~-~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~--g~~p~~~~v~W~k~g-~~~~~~~~~ 160 (210)
T 1lk3_L 86 FCQQSWNGPLTF-GAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMN--NFYPRDISVKWKIDG-TERRDGVLD 160 (210)
T ss_dssp EEEECSSSSCEE-CCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEE--EEBSSCCEEEEEETT-EECCTTEEE
T ss_pred EEEEEcCCCcee-CCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEE--eEeCCceEEEEEeCC-ccCCCCceE
Confidence 999998765432 2222344443 56666544433 234799999999983 224544 89999954 344322 11
Q ss_pred E-----------EecceEEEccccceeceEEEEEEecccce
Q psy535 203 K-----------IVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 203 ~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
. .....|.|..+...|.|.|+|.|.|....
T Consensus 161 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 161 SVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred ccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 0 01126889999999999999999997654
No 217
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.78 E-value=1.7e-18 Score=143.88 Aligned_cols=136 Identities=24% Similarity=0.456 Sum_probs=100.1
Q ss_pred EEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec-CCeeEEcceeeeecceeeEEEEEEE-ecCCCCCeEEEeeCCee
Q psy535 20 LVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRL 97 (460)
Q Consensus 20 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~ 97 (460)
|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.. ++.+...+....+.+|+.++|.|.+ .+.|.+ .+.|++++..
T Consensus 74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~ 152 (212)
T 2v9r_A 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP-TISWKKDGSP 152 (212)
T ss_dssp CCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC-EEEEEETTEE
T ss_pred EEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC-EEEEEECCcc
Confidence 334566999999999999998876545677888765 4556566777788899999999998 777766 8999999999
Q ss_pred cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCC
Q psy535 98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159 (460)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~ 159 (460)
+... ..+ ....++.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..+|.+...|.
T Consensus 153 l~~~-~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~s~~~~l~V~~~P~~~~~P~ 211 (212)
T 2v9r_A 153 LDDK-DER-ITIRGGKLMITYTRKSDAGKYVCVGTNMVGER-ESEVAELTVLERPSFVKAAA 211 (212)
T ss_dssp ECTT-STT-EEEETTEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC---------
T ss_pred CCCC-cce-EEccCCeEEEeeCCHhhCeeEEEEEecccCce-ecceEEEEEEeCchHhhhcc
Confidence 8642 223 33467789999999999999999999998875 33346777888888776553
No 218
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.77 E-value=2.5e-17 Score=140.59 Aligned_cols=177 Identities=15% Similarity=0.260 Sum_probs=120.8
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC---------------ccccccEEEeec-----CeEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE---------------PYQTKDIVVMQN-----GSLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~-----~~l~i~~ 118 (460)
.|....+.+|++++|.|.+.+.+ +.+.+.|+|+ +..+. .....++.+..+ .+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (256)
T 1nqb_A 6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS 85 (256)
T ss_dssp ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence 45567788999999999998875 2347999994 22210 011245554432 3799999
Q ss_pred cCCCCCeEEEEEEEcCCCC---cceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-----eeEEE
Q psy535 119 VNQNHQGRYTCTPYNAHGT---QGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-----TITWQ 190 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-----~~~W~ 190 (460)
++.+|+|.|+|.+.|..|. ......+.|.|..+|.+...|... .+..|+.++|.|.+ .+.+.+ .+.|+
T Consensus 86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~-~v~~G~~v~L~C~~---~~~~~~~~~~~~v~W~ 161 (256)
T 1nqb_A 86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSL-PVSLGDQASISCRS---SQSIVHSNGNTYLEWY 161 (256)
T ss_dssp CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEE-EECTTCCEEEEEEE---SSCCBCTTSCBCEEEE
T ss_pred CChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEE-EEecCCcEEEEeEe---cCcccccccceEEEEE
Confidence 9999999999999987652 222334567777777776666654 68899999999998 676654 99999
Q ss_pred cC--CCccC------------CcccEEEe----cceEEEccccceeceEEEEEEecccce-eeeeeEEEEe
Q psy535 191 RR--DGVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVAT-IVQAAQLVVE 242 (460)
Q Consensus 191 ~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~-~~~~~~l~v~ 242 (460)
+. +..+. ...++... ...|.|.++...|+|.|.|.+.|.... ......|.|.
T Consensus 162 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 162 LQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp EECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 83 32220 02233322 236999999999999999999985432 2223345554
No 219
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.77 E-value=3.6e-18 Score=144.86 Aligned_cols=178 Identities=14% Similarity=0.227 Sum_probs=118.5
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc--cEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK--DIVVMQNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
.+|.+...|. ..+.+|++++|.|.+.+. ...+.|+|+|..+.+.... ......++.|.|.+++.+|+|.|+|.+.
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~~--~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWSDVR--FQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEESSC--CSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEecCCC--CcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 3566666665 667889999999999753 3479999998765321100 0001234579999999999999999998
Q ss_pred cCCC---CcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc-EEE-
Q psy535 133 NAHG---TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-VKI- 204 (460)
Q Consensus 133 ~~~g---~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-~~~- 204 (460)
+..+ ....+..+.|.|.. +|.+...+.. .+..|++++|.|.+ .+. .+.+.|++++........ ...
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~--~V~~G~~vtL~C~~---~~~-~~~~~w~k~g~~~~~~~~~~~~~ 156 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGP--TVLAGESVTLSCSS---RSS-YDMYHLSREGEAHERRFSAGPKV 156 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCT--TCBTTCEEEEEEEC---SSC-CSEEEEEETTSSCEECCBCBCCS
T ss_pred ccCCCccccccCCCEEEecccCCCCcceEccCCC--ccCCCCEEEEEEeC---CCC-CcEEEEEECCcccCccccccccc
Confidence 6432 22345566666654 4666666653 57899999999997 444 478999996543322111 111
Q ss_pred ---ecceEEEccccceeceEEEEEEecccc-----eeeeeeEEEEec
Q psy535 205 ---VGGNITIEGLRRVDFGYYECVVSNEVA-----TIVQAAQLVVEG 243 (460)
Q Consensus 205 ---~~~~l~i~~~~~~~~g~y~C~a~n~~g-----~~~~~~~l~v~~ 243 (460)
.+..|.|.++. |.|.|+|.+.+... ..+..+.|.|.+
T Consensus 157 ~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g 201 (257)
T 1b6u_A 157 NGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTG 201 (257)
T ss_dssp SSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBC
T ss_pred CCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEec
Confidence 24578999998 99999999997532 223445566654
No 220
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=131.04 Aligned_cols=117 Identities=27% Similarity=0.382 Sum_probs=98.4
Q ss_pred EEEEEEcCCCCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeecccc
Q psy535 317 FQVVGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQ 392 (460)
Q Consensus 317 ~~~~a~n~~G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~ 392 (460)
++|.|.|..|.+..|..+.+.+....|. +|.++++...+ +++.|+|++|.. .++.+.+|.|+|+..+..
T Consensus 2 ~~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~------- 74 (124)
T 2ed9_A 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRR------- 74 (124)
T ss_dssp CSCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSS-------
T ss_pred CeEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCC-------
Confidence 3578999999999999999988888786 89899998776 599999999976 688999999999976430
Q ss_pred CCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
.|... .....+.+.|.+|.|++.|.|+|+|.|..|.|++|+++.++|+
T Consensus 75 ------------------~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 122 (124)
T 2ed9_A 75 ------------------GEMET--LEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETP 122 (124)
T ss_dssp ------------------CCEEE--ECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEECC
T ss_pred ------------------cceEE--ecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEECC
Confidence 11111 2346788999999999999999999999999999999999985
No 221
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=99.77 E-value=4.2e-17 Score=142.31 Aligned_cols=174 Identities=21% Similarity=0.276 Sum_probs=131.9
Q ss_pred cCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEEE
Q psy535 243 GTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQVV 320 (460)
Q Consensus 243 ~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 320 (460)
.++|.+|.++.. .....++.|+|.++. . .+.+|.+.|+.... ..|...... .....+.|.+|.+++.|.|++.
T Consensus 18 ~~~p~~P~~l~~~~~~~~sv~l~W~~p~---~-~~~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~ 92 (290)
T 3r8q_A 18 GPAIPAPTDLKFTQVTPTSLSAQWTPPN---V-QLTGYRVRVTPKEKTGPMKEINLA-PDSSSVVVSGLMVATKYEVSVY 92 (290)
T ss_dssp --CCCCCEEEEEEEECSSCEEEEEECCS---S-CCCEEEEEEEESSSSSCCEEEEEC-TTCCEEEECSCCSSCEEEEEEE
T ss_pred CCCCCCCCceEEEECCCCEEEEEEeCCC---C-CeeEEEEEEEeCCCCCceEEEEcC-CCccEEEeCCCCCCCEEEEEEE
Confidence 356777887775 566789999999862 2 34789999887653 445554433 3567999999999999999999
Q ss_pred EEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccc
Q psy535 321 GKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399 (460)
Q Consensus 321 a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~ 399 (460)
|.|..|.+..+ ...+.+... |.+|.++.+...+ +++.|+|+++ ++.+.+|.|+|+..+....
T Consensus 93 a~~~~g~s~~s-~~~~~t~~~-~~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~~~------------ 155 (290)
T 3r8q_A 93 ALKDTLTSRPA-QGVVTTLEN-VSPPRRARVTDATETTITISWRTK---TETITGFQVDAVPANGQTP------------ 155 (290)
T ss_dssp EEETTEECCCE-EEEEECCCC-CCCCEEEEEEEECSSCEEEEEECC---SCCCCEEEEEEEESSSCCC------------
T ss_pred EEeCCCCCCCc-ceeEecCCC-CCCCceeEEEEcCCCeEEEEEeCC---CCcccEEEEEEEECCCCcc------------
Confidence 99999988766 455565544 6789999998766 6999999997 4679999999997543110
Q ss_pred ccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452 (460)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s 452 (460)
+ ........+.+.|.+|.|++.|.|+|.|.|..|.|+++
T Consensus 156 ------------~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~ 194 (290)
T 3r8q_A 156 ------------I--QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV 194 (290)
T ss_dssp ------------E--EEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred ------------e--EEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCE
Confidence 0 00112467789999999999999999999999988764
No 222
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.77 E-value=5.8e-18 Score=138.17 Aligned_cols=139 Identities=22% Similarity=0.309 Sum_probs=104.4
Q ss_pred cccCcccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535 3 TKVGSLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 3 ~~~~~~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
+.....+.|+.+..+ ++|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+. ..+.+|+.+.|.|.+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~-~~~~~g~~v~l~C~~~ 119 (192)
T 2va4_A 42 GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVFVQPHIIQLKN-ETTYENGQVTLVCDAE 119 (192)
T ss_dssp TEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEEECC-EEECTTSEEEEEEEEE
T ss_pred CeEcCCCccEEEeCCeeEEEEecCChhcCcEEEEEEEcccccc-ceEEEEEEEccCcccccCc-ceEEeCCeEEEEEEec
Confidence 344455577777654 489999999999999999999988765 5778888888887765443 4566799999999999
Q ss_pred cCCCCCeEEEeeC--CeecCcc---ccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 82 ANPTFQYVTWTKD--KRLLEPY---QTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 82 ~~~~~~~v~W~~~--~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
+.|.+ .+.|+++ +..+... ...++.... .+.|.|.++..+|+|.|+|.|.|..|....+..+
T Consensus 120 ~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 189 (192)
T 2va4_A 120 GEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 189 (192)
T ss_dssp EESCC-EEEEEETTTTEEECTTCBCTTSCEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred CCCCC-cEEEEeCCCCceeeccccccCCcEEEeeccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEE
Confidence 98766 7999998 5554321 122333322 2469999999999999999999999885444333
No 223
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.3e-17 Score=138.56 Aligned_cols=181 Identities=18% Similarity=0.223 Sum_probs=128.4
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~ 131 (460)
.+|.+ ..|....+.+|+.+.|.|.+.+.|.+ .+.|+|+|..+......++.+.. .+.|.|.++..+|+|.|+|.|
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 95 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEEEEESCC-EEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEEeecCCC-EEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence 45666 46767888999999999999998876 89999999998764444555443 357999999999999999999
Q ss_pred EcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeec-cCCCCCC--eeEEEcCCCccCCcccEEEe---
Q psy535 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE-AEGTQKP--TITWQRRDGVALPKNRVKIV--- 205 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~p~~--~~~W~~~~~~~~~~~~~~~~--- 205 (460)
.|..|... ..+.|.+..+|....... ....+..+.|.|.... +.+.|.. .+.|.+.+............
T Consensus 96 ~n~~g~~~--~~~~l~v~~~P~~p~~~~---~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~ 170 (215)
T 3mtr_A 96 VNRIGQES--LEFILVQADTPSSPSIDQ---VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170 (215)
T ss_dssp ECSSCEEE--EEEEEEECCCCCCCEEEE---EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHH
T ss_pred EECCCceE--EEEEEEECCCCCCCcceE---EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccccccccc
Confidence 99998764 456666666664332211 2234677888886421 1333433 47888754432221111111
Q ss_pred -cceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 206 -GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 206 -~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
...+.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus 171 ~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~ 208 (215)
T 3mtr_A 171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 208 (215)
T ss_dssp HHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred ccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence 2679999999999999999999999988777666655
No 224
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.77 E-value=2.1e-17 Score=139.86 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=111.0
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec-------------CccccccEEEee----cCeEEEeec
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL-------------EPYQTKDIVVMQ----NGSLLFTRV 119 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~-------------~~~~~~~~~~~~----~~~l~i~~~ 119 (460)
+...|....+.+|++++|.|. .+.+.+ .|.|+|+ +... ......++.+.. ..+|.|.++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v 80 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCS-EEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCc-cEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence 445677788999999999999 666654 7999995 2111 000123343332 347999999
Q ss_pred CCCCCeEEEEEEEcCCCCcc---eeeEEEEEeeCCC------------ceeeCCCcccccCCCCeEEEEeeeeccCCCCC
Q psy535 120 NQNHQGRYTCTPYNAHGTQG---SSGQMEVLVRKPP------------AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g~~~---~~~~~~v~v~~~p------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~ 184 (460)
+.+|+|.|+|.+.|..|... ......|.|..++ .+...|... .+..|+.++|.|.+ .+.|.
T Consensus 81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~---~~~p~ 156 (238)
T 2p1y_A 81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSL-TVWEGETAILNCSY---ENSAF 156 (238)
T ss_dssp CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEE-EEETTSCEEEEEEC---CCTTC
T ss_pred CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceE-EEeCCCeEEEEEEE---ecCCC
Confidence 99999999999998765211 1122344444433 444445554 67899999999998 78888
Q ss_pred CeeEEEcCCCcc-C-------------CcccEEEe------cceEEEccccceeceEEEEEEeccc
Q psy535 185 PTITWQRRDGVA-L-------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 185 ~~~~W~~~~~~~-~-------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
+.+.|++++... . ...++... ...|.|.++..+|+|.|.|.|.|..
T Consensus 157 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 157 DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred CcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 999999854211 0 12334432 2479999999999999999999873
No 225
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.77 E-value=2.3e-17 Score=141.13 Aligned_cols=176 Identities=17% Similarity=0.219 Sum_probs=115.4
Q ss_pred ceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC--------------ccccccEEEeec-----CeEEEeecC
Q psy535 63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE--------------PYQTKDIVVMQN-----GSLLFTRVN 120 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~--------------~~~~~~~~~~~~-----~~l~i~~~~ 120 (460)
|....+.+|++++|.|.+.+.| +.+.|.|+|+ +..+. .....++.+..+ .+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (257)
T ss_dssp ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence 4445688999999999999875 2347999995 22110 001245554432 379999999
Q ss_pred CCCCeEEEEEEEcCCC-------CcceeeEEEEEeeCCC---------------ceeeCCCcccccCCCCeEEEEeeeec
Q psy535 121 QNHQGRYTCTPYNAHG-------TQGSSGQMEVLVRKPP---------------AFTIKPEAMYQRKVGESVDMHCEAQE 178 (460)
Q Consensus 121 ~~d~G~y~C~~~~~~g-------~~~~~~~~~v~v~~~p---------------~~~~~~~~~~~~~~g~~~~l~C~~~~ 178 (460)
.+|+|.|+|.|.|..| .........|.|..+| .+...+... .+..|+.++|.|.+
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~v~~G~~v~L~C~~-- 163 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLL-SASVGDRVTLSCKG-- 163 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEE-CCCTTCCEEEEEEC--
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEE-EEcCCCCEEEEEEE--
Confidence 9999999999998754 1111223455565443 222334333 57899999999998
Q ss_pred cCCCCCCeeEEEcC--CCccC------------CcccEEEe----cceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535 179 AEGTQKPTITWQRR--DGVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240 (460)
Q Consensus 179 ~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~ 240 (460)
.+.+.+.+.|++. +..+. ...++... ...|.|.++..+|+|.|.|.|.|..........|.
T Consensus 164 -~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~ 242 (257)
T 1f3r_B 164 -SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLE 242 (257)
T ss_dssp -SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEEC
T ss_pred -CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEE
Confidence 6778889999983 32210 02333322 23699999999999999999999652222333455
Q ss_pred Ee
Q psy535 241 VE 242 (460)
Q Consensus 241 v~ 242 (460)
|.
T Consensus 243 V~ 244 (257)
T 1f3r_B 243 LK 244 (257)
T ss_dssp CS
T ss_pred Ee
Confidence 54
No 226
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.77 E-value=6.6e-18 Score=135.39 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=95.6
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 97 (460)
++|.|.+++.+|+|.|+|.+.|..+ +..+.|.|..++... .+....+.+|+.++|.|.+.+.++++.+.|+|+|..
T Consensus 54 ~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~ 129 (175)
T 1fnl_A 54 SSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLL-QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKD 129 (175)
T ss_dssp SEEEESSCCGGGCEEEEEECSSSCC---CCCEEEEEECSSEEE-ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEE
T ss_pred eEEEEeCCCcccCEEEEEEeeCCcc---cccEEEEEeCCCcee-eCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeE
Confidence 4899999999999999999998543 566788887655443 334466788999999999998876668999999998
Q ss_pred cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535 98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK 150 (460)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~ 150 (460)
+.. ...++.|.|.++..+|+|.|+|.|.|..+.. .+..+.|.|..
T Consensus 130 ~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~ 174 (175)
T 1fnl_A 130 RKY-------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNV-SSETVNITITQ 174 (175)
T ss_dssp EEE-------EEECCCEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC
T ss_pred ccC-------CCCCCEEEEcccChhhCeEEEEEEEcCCCCc-cCccEEEEEeC
Confidence 742 1345689999999999999999999976543 45566676654
No 227
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*
Probab=99.77 E-value=1e-16 Score=141.24 Aligned_cols=234 Identities=14% Similarity=0.141 Sum_probs=139.3
Q ss_pred EEEccccceeceEEEEEEe---cccceeeeeeEEEE---ecCCCCCCCceeeee-ecceEEEEeecCCCCCCCceeeEEE
Q psy535 209 ITIEGLRRVDFGYYECVVS---NEVATIVQAAQLVV---EGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVI 281 (460)
Q Consensus 209 l~i~~~~~~~~g~y~C~a~---n~~g~~~~~~~l~v---~~~~p~~p~~~~~~~-~~~~~~l~w~~~~~~~~~~~~~~~~ 281 (460)
..+..+.....+.++..|. +..|..+......+ ...+|.+|.++.+.. ....+.++|.++...+. ...|.+
T Consensus 55 ~~~~~~~~~~~y~~~V~a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~~~~--~~~Y~l 132 (314)
T 3bpo_C 55 RRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSP--DTNYTL 132 (314)
T ss_dssp EEEEECCCSSCEEEEEEECC---------CCEEEEECCCCC-CCSSCEEEEEEEETTTEEEEEEECCC---C--CCCEEE
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEECCCCeEEEEECCCCCCCC--CccEEE
Confidence 3444455556666777774 33343332232222 234566788777644 46799999998765533 368888
Q ss_pred EEEecCCCCeeeeec--cCCCCceEEEccCcc----CccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee
Q psy535 282 WYREQGNKDWLPIPV--TPPGSTQITINRLTP----ATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV 354 (460)
Q Consensus 282 ~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~----~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~ 354 (460)
.|+..+...+..... .......+.+..+.. ...|.|++.|.|..|.+..+ .+.+.... ..|.||.++++...
T Consensus 133 ~y~~~~~~~~~~C~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~-~~~~~~~~~v~P~pP~~l~~~~~ 211 (314)
T 3bpo_C 133 YYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS-FNIVPLTSRVKPDPPHIKNLSFH 211 (314)
T ss_dssp EEEESSCSSCEECCCEEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCE-EEEECSSSSEECCCCEEEEEEEE
T ss_pred EEEeCCCCccccCcCeecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecc-cEEEehhheEeeCCCCEEEEEEc
Confidence 876654333332211 111335677776653 67899999999999987543 45554333 34999999999844
Q ss_pred cceEEEEecCCCCCCccceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCc
Q psy535 355 NNGFVISWQPPLERASLIQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP 432 (460)
Q Consensus 355 ~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p 432 (460)
.+++.|+|++|....+.+.+|+|+|+..+. |........ ... . ..+.......+.+.|.+|.|
T Consensus 212 ~~~l~lsW~~P~~~~~~~l~Yev~y~~~~~~~w~~~~~~~~-----~c~--~--------~~~~~~~~~~~~~~l~~L~p 276 (314)
T 3bpo_C 212 NDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEA-----KCE--N--------PEFERNVENTSCFMVPGVLP 276 (314)
T ss_dssp TTEEEEEEECCTTCCGGGEEEEEEEEC--CCCEEEEEESCC-----CCC--C--------TTSSCCCSSEEEEEEESCCT
T ss_pred CCcEEEEEeCCCccCCceEEEEEEEEECCCCcceEEecccc-----ccc--c--------cccccccCCceEEEEccCCC
Confidence 479999999997555567999999997532 332211000 000 0 00000113467889999999
Q ss_pred CceEEEEEEEeec------CC-CCCCCceeEeecC
Q psy535 433 ATTYEFQVVGKNE------LG-DGMLSNIVVVKTK 460 (460)
Q Consensus 433 ~~~Y~~~v~a~n~------~G-~s~~s~~~~~~T~ 460 (460)
++.|.|||+|.+. .| +|+||.++.+.++
T Consensus 277 ~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~~~~~~ 311 (314)
T 3bpo_C 277 DTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKK 311 (314)
T ss_dssp TSCEEEEEEEEECTTTSCCCCCCCCCCCCEEESCC
T ss_pred CCEEEEEEEeeecccccCCCCeeCCCCCCeEeccc
Confidence 9999999999995 56 5888888887653
No 228
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.77 E-value=4e-18 Score=139.91 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=102.8
Q ss_pred ecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535 68 LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147 (460)
Q Consensus 68 ~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~ 147 (460)
+.+|++++|.|.+ |. +.|.|+|+|..+... ...+++|.|.++..+|+|.|+|.+.+.. +..+.|.
T Consensus 15 ~~~G~~v~L~C~~---p~-~~i~W~k~g~~l~~~------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~-----s~~~~v~ 79 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EA-KNITWFKDGKMIGFL------TEDKKKWNLGSNAKDPRGMYQCKGSQNK-----SKPLQVY 79 (204)
T ss_dssp CCSSSEEEEEECS---CS-SEEEEEETTEEEEEE------ESSCCCEEEEEGGGCCEEEEEEESSSSC-----CCCEEEE
T ss_pred ecCCCeEEEEEcC---CC-CEEEEEECCEECCCC------CCCCCeEEeCCCCcCCCEEEEEEecCCC-----CeeEEEE
Confidence 4579999999998 43 479999999887531 1235679999999999999999975422 1123343
Q ss_pred ee---------------------------C----CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc
Q psy535 148 VR---------------------------K----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196 (460)
Q Consensus 148 v~---------------------------~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~ 196 (460)
+. . ++.+...|.. ....|+.++|.|. +.|.|.+.|++++..+
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--v~~~G~~v~L~C~-----g~p~p~i~W~k~~~~l 152 (204)
T 1sy6_A 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK--VSISGTTVILTCP-----QYPGSEILWQHNDKNI 152 (204)
T ss_dssp EEC------------------------------------CCCCE--EEEETTEEEEECS-----CCCSSCEEEEETTEEE
T ss_pred EEEeccccccccccccccccccccccccccccccccceecCCce--eeecCCcEEEEcC-----CCCCCceEEEECCEEC
Confidence 33 0 1222212211 2238999999996 5678899999955433
Q ss_pred CCc---ccEEEecceEEEccc-cceeceEEEEEEeccccee-eeeeEEE
Q psy535 197 LPK---NRVKIVGGNITIEGL-RRVDFGYYECVVSNEVATI-VQAAQLV 240 (460)
Q Consensus 197 ~~~---~~~~~~~~~l~i~~~-~~~~~g~y~C~a~n~~g~~-~~~~~l~ 240 (460)
... ..+...++.|.|.++ ...|+|.|+|.|.|..|.. +..+.|.
T Consensus 153 ~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~ 201 (204)
T 1sy6_A 153 GGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR 201 (204)
T ss_dssp SCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred CCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence 221 233345789999999 9999999999999999963 3344443
No 229
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.77 E-value=4.8e-18 Score=141.70 Aligned_cols=173 Identities=12% Similarity=0.232 Sum_probs=112.1
Q ss_pred eeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCC---ee-------------cCccccccEEEee---cCeEEEe
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDK---RL-------------LEPYQTKDIVVMQ---NGSLLFT 117 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~---~~-------------~~~~~~~~~~~~~---~~~l~i~ 117 (460)
.+...| ...+.+|++++|.|.+.+. +.+ .+.|+|.. .. .......++.... +.+|.|.
T Consensus 3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (218)
T 3s96_B 3 VLTQSS-SASFSLGASAKLTCTLNSQHSTY-TIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS 80 (218)
T ss_dssp SEECCS-EEEEETTSCEEEEEEECGGGTTC-CEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred eEEeCC-cEEECCCCcEEEEEECCCCCCCc-EEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence 344556 7788899999999999987 555 79999831 11 0000112343322 2359999
Q ss_pred ecCCCCCeEEEEEEEcCCC---CcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEE
Q psy535 118 RVNQNHQGRYTCTPYNAHG---TQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITW 189 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g---~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W 189 (460)
+++.+|+|.|+|.+.+..| .......+.|.|. .+|.+...+... .+..|+.++|.|.+. ...|.+ .+.|
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~-~~~~~~~v~L~C~~~--g~~p~~~~v~W 157 (218)
T 3s96_B 81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSS-EELKENKATLVCLIS--NFSPSGVTVAW 157 (218)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCH-HHHHTTEEEEEEEEE--EEBSSCCEEEE
T ss_pred cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCc-ccccCCcEEEEEEEC--cccCCCeEEEE
Confidence 9999999999999998765 2223334455555 456666544433 344578999999993 225666 8999
Q ss_pred EcCCCccCCcc-c---E------EEecceEEEccccceeceEEEEEEecccceeeee
Q psy535 190 QRRDGVALPKN-R---V------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 190 ~~~~~~~~~~~-~---~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 236 (460)
++++ ..+... . . ......|.|......|.|.|+|.|.|..+.....
T Consensus 158 ~k~g-~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 213 (218)
T 3s96_B 158 KANG-TPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS 213 (218)
T ss_dssp EETT-EEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred EECC-EECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence 9944 444321 0 0 0112346677777778999999999988765543
No 230
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.77 E-value=4.9e-18 Score=142.36 Aligned_cols=173 Identities=15% Similarity=0.167 Sum_probs=116.7
Q ss_pred eeeecceeeEEEEEEEecCCCC--CeEEEeeCCeecCcc--------------ccccEEE----------eecCeEEEee
Q psy535 65 VQYLPFRLQGVVQCHIKANPTF--QYVTWTKDKRLLEPY--------------QTKDIVV----------MQNGSLLFTR 118 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~--------------~~~~~~~----------~~~~~l~i~~ 118 (460)
...+..|++++|.|.+.+.+.+ ..|+|+|++..+... ...+... ..+++|.|.+
T Consensus 10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 3456789999999999886654 248999976543210 0111111 1235799999
Q ss_pred cCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC
Q psy535 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~ 198 (460)
++.+|+|.|+|.+.+..+... .....+.+..+|.....+... ....++.+.+.|.+. .+.|.+.+.|+++++....
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~c~~~--~~~P~~~~~w~~~~~~~~~ 165 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTR-RGVTWLRVIAQPENHAEAQEV-TIGPQSVAVARCVST--GGRPPARITWISSLGGEAK 165 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEEECCB-CCSSSCEEEEEEEEE--EEBSCCEEEEECSSCCEEE
T ss_pred CCHHHCcceEEEEEeCCCcce-eeeeeeeeecCCceeecccce-eecceeeeeeeeeec--CCCCCCEEEEEECCccccC
Confidence 999999999999998766553 334445555566655554444 456677788888764 6788899999986554432
Q ss_pred cccEEE-------ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 199 KNRVKI-------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 199 ~~~~~~-------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
...... ..+.|.|..+...|.|.|+|.|.|..+.......+.+
T Consensus 166 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 166 DTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL 215 (225)
T ss_dssp EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred CcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence 221111 1235999999999999999999998877655444443
No 231
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.76 E-value=1.9e-18 Score=141.70 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=99.6
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceeeEEEEEEEecCCCC--CeEEEeeC
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKD 94 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~ 94 (460)
+.|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|..+|. +.+.+. ..+.+|+.++|.|.+.+.+++ ..|+|+|+
T Consensus 54 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~ 131 (202)
T 1vca_A 54 STLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131 (202)
T ss_dssp EEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEET
T ss_pred cEEEECcCCHHHCEEEEEEEEECCceE-eeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeC
Confidence 489999999999999999999987764 6788999987665 334444 667889999999999886443 36999999
Q ss_pred CeecCcccccc-----EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc-----eeeEEEEEeeCCCc
Q psy535 95 KRLLEPYQTKD-----IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG-----SSGQMEVLVRKPPA 153 (460)
Q Consensus 95 ~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~-----~~~~~~v~v~~~p~ 153 (460)
+..+....... ........|.|..+..+|.|.|+|+|.|..+... .+..+.|.|.++|.
T Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp TEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred CeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 98875321100 0011223467888888899999999999877632 45677788888875
No 232
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.3e-16 Score=139.41 Aligned_cols=220 Identities=17% Similarity=0.203 Sum_probs=147.5
Q ss_pred ccceeceEEEEEEecccceeeeeeEEEE---ecCCCCCCCceeeeeecceEEEEeecCCCCC-----CCceeeEEEEEEe
Q psy535 214 LRRVDFGYYECVVSNEVATIVQAAQLVV---EGTQPHAPYNITGVATEFSVTLEWLPGYSGG-----PDLKQNYVIWYRE 285 (460)
Q Consensus 214 ~~~~~~g~y~C~a~n~~g~~~~~~~l~v---~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~-----~~~~~~~~~~~~~ 285 (460)
+.....+.++..|.| .|.+..+....+ ...++.+|. +.......++.|.|.|+...+ ...+..|.+.|++
T Consensus 68 l~~~~~Y~~rV~A~n-~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~~~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~ 145 (306)
T 3s98_A 68 LNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWK 145 (306)
T ss_dssp -CTTSCEEEEEEEEC-SSCEEEEECCCBCHHHHCBCCCCE-EEEEECSSCEEEEEECC---CCCC-----CCEEEEEEEE
T ss_pred cCCCCcEEEEEEEEe-CCcCCCEeeeeEechhhCccCCCe-EEEEEcCCEEEEEEECCCCCCcceeccCCcEEEEEEEEE
Confidence 345567888899999 664433222211 123455554 555555578999999765421 1234788888877
Q ss_pred cCCCC-eeeeeccCCCCceEEEccCccCccEEEEEEEEc--CCCCCCCCCcEEEEccCCCC-CCCcceEEEeecceEEEE
Q psy535 286 QGNKD-WLPIPVTPPGSTQITINRLTPATTYEFQVVGKN--ELGDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFVIS 361 (460)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n--~~G~~~~s~~~~~~~~~~~P-~~p~~~~~~~~~~~v~l~ 361 (460)
.+... +. ... ....+.|.+|.+++.|.+++.|.| ..|.|..|..+.+.+....| .+|.++.+....+++.|+
T Consensus 146 ~~~~~~~~-~~~---~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~p~~~P~~v~~~~~~~s~~l~ 221 (306)
T 3s98_A 146 NSSGVEER-IEN---IYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLK 221 (306)
T ss_dssp TTTCCCEE-EEE---ECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCCSSCCCEEEEEEEETTEEEEE
T ss_pred CCCCCeEE-Eec---ccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCCcCCCCceEEEEEecCEEEEE
Confidence 65443 33 221 346899999999999999999999 67889999999998877655 688999997777899999
Q ss_pred ecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec-cCCCCcceEEECC-CCcCceEEEE
Q psy535 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP-VTPPGSTQITINR-LTPATTYEFQ 439 (460)
Q Consensus 362 W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~-L~p~~~Y~~~ 439 (460)
|+++... .+|.+.|.. .|.++....+...|..+. -.....+.+.+.+ |.+...|.||
T Consensus 222 W~~p~~~----~~~~v~~~~-----------------gy~~~~~~~~~~~W~~~~~c~~~~~~~c~~~~~~~~~~~Y~~R 280 (306)
T 3s98_A 222 WDYTYAN----MTFQVQWLH-----------------AFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLR 280 (306)
T ss_dssp EECSSSS----CEEEEEEEE-----------------GGGGSCC----CCCEECGGGTTBSSSEEEEEGGGSCSSEEEEE
T ss_pred eCCCCCc----EEEEEEEeh-----------------hhhhccccccccCceECCCceeCCCccccCchhhcccCCEEEE
Confidence 9997532 356666652 233333333455677542 1223556677777 3455599999
Q ss_pred EEEeecCCCCCCCceeEeecC
Q psy535 440 VVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 440 v~a~n~~G~s~~s~~~~~~T~ 460 (460)
|+|.|..|.|.+|+.+.|.|.
T Consensus 281 V~A~n~~~~s~~s~~~~~~~~ 301 (306)
T 3s98_A 281 VQASDGNNTSFWSEEIKFDTE 301 (306)
T ss_dssp EEEECSSCBCCCCCCEEEEC-
T ss_pred EEEccCCCccccccccccCcc
Confidence 999999999999999999874
No 233
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.76 E-value=2.6e-17 Score=140.48 Aligned_cols=180 Identities=16% Similarity=0.207 Sum_probs=117.9
Q ss_pred EEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC---------------ccccccEEEeecC-----eEEE
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE---------------PYQTKDIVVMQNG-----SLLF 116 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~-----~l~i 116 (460)
...|....+.+|++++|.|.+.+.+ +.+.+.|+|. +..+. .....++....+. +|.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 84 (253)
T 3uzq_A 5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL 84 (253)
T ss_dssp EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence 3456677888999999999998753 1247999982 21110 1112344444332 3999
Q ss_pred eecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC---------------CCceeeCCCcccccCCCCeEEEEeeeeccCC
Q psy535 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---------------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEG 181 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~---------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 181 (460)
.+++.+|+|.|+|.+.|..+.. ......|.|.. +|.+...+... .+..|+.++|.|.+ .+
T Consensus 85 ~~v~~~DsG~Y~C~~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~---~~ 159 (253)
T 3uzq_A 85 SSLTSGDTAVYYCSRGWEGFAY-WGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASL-AVSLGQRATISCRA---SE 159 (253)
T ss_dssp CSCCGGGCEEEEEEECSSSCCE-ECCCEEEEECSSSCCCCC---------CCEEEECSEE-EECTTSCEEEEEEE---SS
T ss_pred CCCCcccCEEEEEEEeeCCccE-ECCCcEEEEecCCccccccccCCCcccceEECcCCeE-EEeCCCCEEEEEEe---cC
Confidence 9999999999999999855443 12233444443 45566656554 68899999999999 67
Q ss_pred CCCC----eeEEEcCCC-ccCC-------------cccEEEe----cceEEEccccceeceEEEEEEeccccee-eeeeE
Q psy535 182 TQKP----TITWQRRDG-VALP-------------KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQ 238 (460)
Q Consensus 182 ~p~~----~~~W~~~~~-~~~~-------------~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~ 238 (460)
.+.+ .+.|++... .... ..++... ...|.|.++..+|+|.|.|.+.|..+.. .....
T Consensus 160 ~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~ 239 (253)
T 3uzq_A 160 NVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTK 239 (253)
T ss_dssp CCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEE
T ss_pred ccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEE
Confidence 7766 899998421 1110 1233322 2259999999999999999999865432 22345
Q ss_pred EEEecC
Q psy535 239 LVVEGT 244 (460)
Q Consensus 239 l~v~~~ 244 (460)
|.|...
T Consensus 240 l~v~~~ 245 (253)
T 3uzq_A 240 LEIKRP 245 (253)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 566543
No 234
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.76 E-value=7.2e-17 Score=137.33 Aligned_cols=176 Identities=14% Similarity=0.184 Sum_probs=115.5
Q ss_pred ceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eec---------------CccccccEEEeec-----CeEEEeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLL---------------EPYQTKDIVVMQN-----GSLLFTRV 119 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~---------------~~~~~~~~~~~~~-----~~l~i~~~ 119 (460)
|....+.+|++++|.|.+.+.|. .+.|.|+|+. ..+ ......++.+..+ .+|.|.++
T Consensus 9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 34467889999999999998762 3479999842 111 0112245544432 36999999
Q ss_pred CCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC---------------CceeeCCCcccccCCCCeEEEEeeeeccCCCCC
Q psy535 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP---------------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~ 184 (460)
+.+|+|.|+|.|.|..+.........|.|..+ +.+...+... .+..|+.++|.|.+ .+.+.
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~~~~~ 164 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATL-SLSPGERATLSCRA---SQSVR 164 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEE-EECTTSCEEEEEEE---SSCCT
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEE-EecCCCcEEEEEEe---CCCcc
Confidence 99999999999998732222222334555533 3344444443 57899999999999 78888
Q ss_pred CeeEEEcC--CCccC------------CcccEEEe----cceEEEccccceeceEEEEEEeccccee-eeeeEEEEe
Q psy535 185 PTITWQRR--DGVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVVE 242 (460)
Q Consensus 185 ~~~~W~~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~ 242 (460)
+.+.|++. +..+. ...++... ..+|.|.++..+|+|.|.|.|.|..+.. .....|.|.
T Consensus 165 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 165 SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 89999983 22210 12333332 2359999999999999999999854322 223345554
No 235
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.76 E-value=6.9e-18 Score=138.31 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=90.4
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCC-CC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEE
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGI-GE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTW 91 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W 91 (460)
++.|.|.+++.+|+|.|+|.|.|.. |. ..+..+.|.|.. +|.+...+. ..+.+|++++|.|.+.+. . +.+.|
T Consensus 57 ~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~-~-~~v~W 133 (198)
T 1ugn_A 57 KGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVA-F-DGFIL 133 (198)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEEEECSSC-C-SEEEE
T ss_pred ccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCc-cccCCCCcEEEEEecCCC-C-cEEEE
Confidence 4589999999999999999999976 42 235678888876 345544443 567889999999999887 3 48999
Q ss_pred eeCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcCCCCc---ceeeEEEEEee
Q psy535 92 TKDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNAHGTQ---GSSGQMEVLVR 149 (460)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g~~---~~~~~~~v~v~ 149 (460)
+|+|..+.+......... ..+.|.|.++..+|+|.|+|.|.|..+.. ..+..+.|.|.
T Consensus 134 ~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp EEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred EECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 999988753221111111 13579999999999999999999986532 23556666653
No 236
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.76 E-value=5.3e-18 Score=139.25 Aligned_cols=123 Identities=17% Similarity=0.249 Sum_probs=97.0
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 97 (460)
++|.|.+++.+|+|.|+|.+.|.. .+..+.|.|..+|.+...+. ..+.+|++++|.|.+.+.++.+.++|+|+|..
T Consensus 54 ~~L~i~~v~~~D~G~Y~C~a~n~~---~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~ 129 (204)
T 3sgj_C 54 SSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKG 129 (204)
T ss_dssp SEEEESSCCGGGCEEEEEEETTSB---CCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEE
T ss_pred cEEEEecccccCCEEEEEEeCCCc---ccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcE
Confidence 489999999999999999998742 35678899988877665555 66778999999999977765568999999988
Q ss_pred cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535 98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
+.. ...++.|.|.++..+|+|.|+|.|.|..+.. .+..+.|.|..+|
T Consensus 130 ~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~-~s~~~~l~V~~~~ 176 (204)
T 3sgj_C 130 RKY-------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNV-SSETVQITITQGL 176 (204)
T ss_dssp EEE-------EEECCCEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC--
T ss_pred eec-------ccCCceEEECcCCcccCEEEEEEEEeCCCce-ecCcEEEEEeCcC
Confidence 642 1245689999999999999999999954432 5666777777654
No 237
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.76 E-value=1e-16 Score=137.23 Aligned_cols=184 Identities=17% Similarity=0.269 Sum_probs=114.9
Q ss_pred EcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eec--C------------ccccccEEEeecC-----eEEEee
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLL--E------------PYQTKDIVVMQNG-----SLLFTR 118 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~--~------------~~~~~~~~~~~~~-----~l~i~~ 118 (460)
..|....+.+|++++|.|.+.+.+ +...+.|+|.. ... . .....++.+..+. +|.|.+
T Consensus 13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 92 (257)
T 3gkz_A 13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS 92 (257)
T ss_dssp EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence 345556688999999999998853 23479999832 111 0 0112344444322 699999
Q ss_pred cCCCCCeEEEEEEEcCCCC--cceeeEEEEEeeCC--------------CceeeCCCcccccCCCCeEEEEeeeeccCCC
Q psy535 119 VNQNHQGRYTCTPYNAHGT--QGSSGQMEVLVRKP--------------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~--~~~~~~~~v~v~~~--------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 182 (460)
++.+|+|.|+|.+.|..+. ........|.|..+ +.+...+... .+..|+.++|.|.+ .+.
T Consensus 93 v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~-~v~~G~~v~L~C~~---~~~ 168 (257)
T 3gkz_A 93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIM-SASPGEKVTLTCSA---SSS 168 (257)
T ss_dssp CCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEE-EECTTCCEEEEEEE---SSC
T ss_pred CChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceE-EEeCCCcEEEEEEE---ccC
Confidence 9999999999999986221 11222334555443 4555555544 68899999999999 667
Q ss_pred CCC-eeEEEcCC-CccCC-------------cccEEEe----cceEEEccccceeceEEEEEEeccccee-eeeeEEEEe
Q psy535 183 QKP-TITWQRRD-GVALP-------------KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVVE 242 (460)
Q Consensus 183 p~~-~~~W~~~~-~~~~~-------------~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~ 242 (460)
+.+ .+.|++.. +.... ..++... ..+|.|.++..+|+|.|.|.+.+..... ..-..|.|.
T Consensus 169 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~ 248 (257)
T 3gkz_A 169 VSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIK 248 (257)
T ss_dssp CCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred ccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEE
Confidence 777 99999732 11111 1233222 1259999999999999999998754322 222345565
Q ss_pred cCCCCC
Q psy535 243 GTQPHA 248 (460)
Q Consensus 243 ~~~p~~ 248 (460)
..++.+
T Consensus 249 ~~~~~~ 254 (257)
T 3gkz_A 249 RAPHHH 254 (257)
T ss_dssp CC----
T ss_pred eCCCCC
Confidence 433433
No 238
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.76 E-value=9.5e-18 Score=137.98 Aligned_cols=133 Identities=21% Similarity=0.310 Sum_probs=99.6
Q ss_pred ceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcce--eeeEEEEe-------cCCeeEEcceeeeecceeeEEEEEEE
Q psy535 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA--AQAYLNVE-------FPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 10 ~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
.++....+++|.|.+++.+|+|.|+|.+.+..+.... ..+.+.+. .+|.+...+....+.+|+.++|.|.+
T Consensus 58 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~ 137 (201)
T 3s97_C 58 RRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA 137 (201)
T ss_dssp SEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEE
T ss_pred CeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEc
Confidence 3344445679999999999999999999997655322 23344442 24556555557778899999999999
Q ss_pred ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
.+.|.+ .+.|++++..+.. .......++.|.|.++..+|+|.|+|.|.|..|....+..+.|
T Consensus 138 ~g~p~p-~v~W~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 199 (201)
T 3s97_C 138 LGNPVP-DIRWRKVLEPMPS---TAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199 (201)
T ss_dssp EEESCC-EEEEEETTBCCCT---TCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCCCCC-ceEEEeCCCcCCC---ceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEE
Confidence 998766 8999999997753 2233345668999999999999999999999988655544443
No 239
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.76 E-value=1.5e-17 Score=138.06 Aligned_cols=165 Identities=14% Similarity=0.241 Sum_probs=110.2
Q ss_pred ceeeeecceeeEEEEEEEecCCC--CCeEEEeeCC--eecC----------ccccccEEEeec---CeEEEeecCCCCCe
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT--FQYVTWTKDK--RLLE----------PYQTKDIVVMQN---GSLLFTRVNQNHQG 125 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~G 125 (460)
|....+.+|++++|.|.+.+.+. .+.|.|+|++ ..+. .....++..... ..|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 77778899999999999988764 3479999953 2220 011234443332 27999999999999
Q ss_pred EEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCc
Q psy535 126 RYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPK 199 (460)
Q Consensus 126 ~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~ 199 (460)
.|+|.+.+..+.. ......|.|. .+|.+...+... .+..|+.++|.|.+ .+ .|.+ .+.|++++ ..+..
T Consensus 87 ~Y~C~~~~~~~~~-~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~p~~~~v~W~k~g-~~l~~ 160 (212)
T 1q0x_L 87 IYFCALWSNNKLV-FGGGTKLTVLGQPKSSPTVTLFPPSS-EELSTAKATLVCTI---TDFYPGVVTVDWKVDG-TPVTA 160 (212)
T ss_dssp EEEEEEECSSCEE-ECCCEEEEECCSCCBCCEEEEECCCH-HHHTTTEEEEEEEE---EEEBSSCCEEEEEETT-EEECT
T ss_pred EEEEEEecCchhh-cCCCeEEEEecCCCCCCeeEEeCCCH-HHccCCcEEEEEEE---EEEeCCCeEEEEEECC-EeCCC
Confidence 9999999876532 1222334442 467766644433 34468899999998 44 3443 89999954 33322
Q ss_pred ccE----EE-------ecceEEEccccceeceEEEEEEeccccee
Q psy535 200 NRV----KI-------VGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 200 ~~~----~~-------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
... .. ....|.|......|.|.|+|.|.|.....
T Consensus 161 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (212)
T 1q0x_L 161 GMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSS 205 (212)
T ss_dssp TEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEE
T ss_pred CeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcce
Confidence 211 11 12357888888889999999999976553
No 240
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.76 E-value=3.7e-18 Score=141.58 Aligned_cols=169 Identities=13% Similarity=0.208 Sum_probs=113.6
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEee---cCeEEEeecCCCCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVMQ---NGSLLFTRVNQNHQ 124 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~~---~~~l~i~~~~~~d~ 124 (460)
...| ...+.+|++++|.|.+. +.+ .+.|+|+ +..+. .....++.... +.+|.|.+++.+|+
T Consensus 5 ~~~~-~~~v~~G~~v~L~C~~~--~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 80 (211)
T 3tv3_L 5 TQPP-SASGSPGQSITISCTGT--SNN-FVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE 80 (211)
T ss_dssp BCCS-EEEECTTCEEEEEEECC--CSS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred EeCc-eEEEcCCCCEEEEEEEC--CCC-eEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence 3445 67788999999999998 444 7999994 22211 00123333222 23699999999999
Q ss_pred eEEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC--CCCeeEEEcCCCccCC
Q psy535 125 GRYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT--QKPTITWQRRDGVALP 198 (460)
Q Consensus 125 G~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--p~~~~~W~~~~~~~~~ 198 (460)
|.|+|.+.+..+.......+.|.|. .+|.+...+... .+..|+.++|.|.+ .+. +.+.+.|++++. .+.
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~---~g~~p~~~~v~W~k~g~-~l~ 155 (211)
T 3tv3_L 81 AVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLI---SDFYPGAVTVAWKADSS-PVK 155 (211)
T ss_dssp EEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCH-HHHHTTCEEEEEEE---EEEBSSCCEEEEEETTE-EEC
T ss_pred EEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCch-hhhcCCCeEEEEEe---eeecCCCeEEEEEECCe-ecC
Confidence 9999999998762223334455555 577777666544 34479999999998 453 357999999543 332
Q ss_pred ccc-----------EEEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 199 KNR-----------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 199 ~~~-----------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
... .......|.|..+...|.|.|+|.|.|..+.....+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 156 AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 205 (211)
T ss_dssp TTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred CCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence 210 001123588888888899999999999887655443
No 241
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.75 E-value=2.2e-17 Score=135.72 Aligned_cols=165 Identities=12% Similarity=0.214 Sum_probs=111.4
Q ss_pred eeecceeeEEEEEEEecCC---CCCeEEEeeCCeecCcc----------ccccEEE--eecCeEEEeecCCCCCeEEEEE
Q psy535 66 QYLPFRLQGVVQCHIKANP---TFQYVTWTKDKRLLEPY----------QTKDIVV--MQNGSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~~~~~~----------~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~ 130 (460)
..+.+|++++|.|.+.+.. +.+.+.|++++..+... ...+... ..+.+|.|.+++.+|+|.|+|.
T Consensus 4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 83 (201)
T 1dr9_A 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV 83 (201)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEE
Confidence 5577899999999985421 22479999998876211 1122322 2345899999999999999999
Q ss_pred EEcCCCCcce---eeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc--E
Q psy535 131 PYNAHGTQGS---SGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR--V 202 (460)
Q Consensus 131 ~~~~~g~~~~---~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~--~ 202 (460)
+.|..|.... ...+.|.|..+ |.+... ....|+.++|.|.+. .+.|.|.+.|++++. .+.... .
T Consensus 84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~-----~~~~g~~~~l~C~~~--~g~P~p~i~W~k~g~-~l~~~~~~~ 155 (201)
T 1dr9_A 84 VLKYEKDAFKREHLAEVTLSVKADFPTPSISDF-----EIPTSNIRRIICSTS--GGFPEPHLSWLENGE-ELNAINTTV 155 (201)
T ss_dssp EEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE-----ECSSTTEEEEEEEEE--EESSCEEEEEEESSC-EECCSEEEE
T ss_pred EEcCCCCccccccccEEEEEEcCCCCCCceEec-----cCCCCCeEEEEEecC--CccCCCEEEEEECCE-ECccccceE
Confidence 9998765533 45677777665 322221 224588999999983 488999999999544 443221 1
Q ss_pred EEe-c-ceE---EEccccceeceEEEEEEecccceeeeeeE
Q psy535 203 KIV-G-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 203 ~~~-~-~~l---~i~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
... . +.+ .+..+...|.|.|+|.|.|..|..+..+.
T Consensus 156 ~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~ 196 (201)
T 1dr9_A 156 SQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN 196 (201)
T ss_dssp EECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred EecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence 221 2 222 22445567899999999999888765544
No 242
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=139.34 Aligned_cols=125 Identities=26% Similarity=0.388 Sum_probs=102.7
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC---------------CeeEEcceeeeecceeeEEEEEEEec
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP---------------AKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|... |.+...+....+.+|+.+.|.|.+.+
T Consensus 65 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g 144 (218)
T 3k0w_A 65 SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVG 144 (218)
T ss_dssp SEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEB
T ss_pred CEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecc
Confidence 389999999999999999999988765566788888755 56777788888999999999999999
Q ss_pred CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535 83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
.|.+ .+.|++++..+... ..+.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|...+
T Consensus 145 ~p~~-~v~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~s~~~~l~V~~~~ 204 (218)
T 3k0w_A 145 SPIP-HYQWFKNELPLTHE--------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQ-DSKKVEIIIDELN 204 (218)
T ss_dssp SSCC-EEEEEETTEECTTC--------CSSEEEESSCCGGGCEEEEEEEECSSCEE-ECCCEEEEECC--
T ss_pred cCCC-eEEEEECCEECCCC--------CCCEEEEeecChhcCEEEEEEEEcCCCCc-eeeeEEEEEeCCc
Confidence 8766 79999999988642 23579999999999999999999987764 4556667776543
No 243
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.75 E-value=4.5e-17 Score=140.86 Aligned_cols=167 Identities=18% Similarity=0.254 Sum_probs=112.6
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe-----ecC-------ccccccEEEeecC---eEEEeecCC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR-----LLE-------PYQTKDIVVMQNG---SLLFTRVNQ 121 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~~-------~~~~~~~~~~~~~---~l~i~~~~~ 121 (460)
+.+...|....+.+|++++|.|.+.+.|.+ .+.|+|++. .+. .....++....++ +|.|.+++.
T Consensus 13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~-~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 13 IQMTQSPSSLSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCEEEECSEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred eeEEeCCCeEEEcCCCCEEEEeEcCCCCCC-cEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 445667778889999999999999887754 799998542 110 0112344444333 799999999
Q ss_pred CCCeEEEEEEEcCCCCcceeeEEEEEeeCCC-------------ce-eeCCCcccccCCCCeEEEEeeeeccCCCC--CC
Q psy535 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP-------------AF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KP 185 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p-------------~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~ 185 (460)
+|+|.|+|.+.|..+.. ......|.|..+| .+ ...+... .+..|+.++|.|.+ .+.+ .+
T Consensus 92 ~DsG~Y~C~~~n~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~-~v~~G~~v~L~C~~---~g~~~~~~ 166 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPT-FGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGG-LVQPGGSLRLSCAA---SGFTISDY 166 (276)
T ss_dssp GGCEEEEEEECSSSSCC-CCCCEEEEC-----------------CCEEEEECCE-EECTTCCEEEEEEE---ESSCGGGS
T ss_pred hhCEEEEEEEecCCccc-ccCCEEEEEecCCCccccccccccCcceEEECCCce-EecCCCeEEEEEEe---cCccCCCC
Confidence 99999999999875432 1112334444332 22 2233333 67899999999998 5655 58
Q ss_pred eeEEEcCCC-ccC------------------CcccEEEec------ceEEEccccceeceEEEEEEecc
Q psy535 186 TITWQRRDG-VAL------------------PKNRVKIVG------GNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 186 ~~~W~~~~~-~~~------------------~~~~~~~~~------~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+.|++++. ... ...++.... ..|.|.++...|+|.|.|.+.|.
T Consensus 167 ~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 167 WIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp EEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 999998531 110 123444332 27999999999999999999997
No 244
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.75 E-value=1.1e-18 Score=144.71 Aligned_cols=141 Identities=23% Similarity=0.360 Sum_probs=108.5
Q ss_pred cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE-ecCC
Q psy535 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI-KANP 84 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~ 84 (460)
...+|+.+.. ++|.|.+++.+|+|.|+|.+.+..|. ..+..+.|.|..+|.+...+....+.+|+.+.|.|.+ .+.|
T Consensus 58 ~~~~r~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p 136 (209)
T 1nbq_A 58 SYEDRVTFLP-TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP 136 (209)
T ss_dssp TTTTTCEEET-TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBS
T ss_pred cccCceEeec-cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCC
Confidence 4467777754 89999999999999999999998653 2355678888888877655555668889999999997 7777
Q ss_pred CCCeEEEeeCCeecCccccc-------cEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535 85 TFQYVTWTKDKRLLEPYQTK-------DIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 85 ~~~~v~W~~~~~~~~~~~~~-------~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~ 149 (460)
.+ .+.|++++..+...... ++.. ...+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|.
T Consensus 137 ~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 137 PS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp CC-EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred Cc-eeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 66 89999999887642211 1111 13457999999999999999999999998755666666553
No 245
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.75 E-value=2.4e-17 Score=136.92 Aligned_cols=169 Identities=12% Similarity=0.229 Sum_probs=112.3
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC---eec---------CccccccEEEeec---CeEEEeecCC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK---RLL---------EPYQTKDIVVMQN---GSLLFTRVNQ 121 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~---~~~---------~~~~~~~~~~~~~---~~l~i~~~~~ 121 (460)
+.+...|....+.+|++++|.|.+.+.+.+ .+.|+|.. ... ......++..... .+|.|.+++.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISN-YLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLES 80 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCc-eEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCc
Confidence 345556777889999999999999998654 79999832 110 0011234443322 3799999999
Q ss_pred CCCeEEEEEEEcCCCCcceeeEEEEEe---eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEcCCCcc
Q psy535 122 NHQGRYTCTPYNAHGTQGSSGQMEVLV---RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQRRDGVA 196 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v---~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~~~~~~ 196 (460)
+|+|.|+|.+.+..+.. ......|.| ..+|.+...+... .+..|+.++|.|.+ .+.+ .+.+.|++++. .
T Consensus 81 ~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~~~~v~l~C~~---~g~~p~~~~v~W~k~g~-~ 154 (213)
T 3r06_A 81 EDIGSYYCQQYYNYPWT-FGPGTKLEIKRADAKPTVSIFPPSS-EQLGTGSATLVCFV---NNFYPKDINVKWKVDGS-E 154 (213)
T ss_dssp GGCSEEEEEECSSSSCE-ECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEE---EEEBSSCEEEEEEETTE-E
T ss_pred ccCEEEEEecccCCceE-EcCCceEEEeccCCCceeeeeCCCc-eecCCCCcEEEEEE---eeecCCceEEEEEECCc-c
Confidence 99999999998865432 222334555 4567777665554 45568889999998 4433 34899999543 3
Q ss_pred CCccc-EE-----------EecceEEEccccceeceEEEEEEecccce
Q psy535 197 LPKNR-VK-----------IVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 197 ~~~~~-~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
+.... .. .....|.|......|.|.|+|.|.|....
T Consensus 155 l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~ 202 (213)
T 3r06_A 155 KRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST 202 (213)
T ss_dssp ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred cCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence 33211 00 01124667777778899999999997544
No 246
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.75 E-value=8e-18 Score=135.08 Aligned_cols=124 Identities=22% Similarity=0.226 Sum_probs=96.4
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 97 (460)
++|.|.+++.+|+|.|+|.+.+..+ +..+.|.|..++.... +....+.+|+++.|.|.+.+.++.+.+.|+++|..
T Consensus 51 ~~L~i~~v~~~d~G~Y~C~~~~~~~---s~~~~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~ 126 (176)
T 1f2q_A 51 SSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEA 126 (176)
T ss_dssp SEEEECSCCGGGCEEEEEECTTSSC---CCCEEEEEECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEE
T ss_pred eEEEEeccceecCEEEEEEcCCccc---cccEEEEEeCcceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEE
Confidence 4899999999999999999988554 4567788875554433 33456779999999999965555458999999998
Q ss_pred cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535 98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153 (460)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~ 153 (460)
+... ..++.|.|.++..+|+|.|+|.|.|..+.. .+..+.|.|..+|.
T Consensus 127 ~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 127 LKYW-------YENHNISITNATVEDSGTYYCTGKVWQLDY-ESEPLNITVIKAPR 174 (176)
T ss_dssp CCSC-------CCSSEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEECSCC
T ss_pred Eeee-------cCCCeEEECCCCcccCEEEEEEEEeCCcce-EecCEEEEEecCCC
Confidence 7521 134679999999999999999999974433 55667788887774
No 247
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.75 E-value=4.2e-17 Score=139.36 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=113.1
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC-----------ccccccEEEe-----ecCeEEEeec
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE-----------PYQTKDIVVM-----QNGSLLFTRV 119 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~-----------~~~~~~~~~~-----~~~~l~i~~~ 119 (460)
.+...|....+.+|++++|.|.+.+.+.+ .+.|+|.. .... .....++... ...+|.|.++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 83 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 83 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCc-eEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence 34556677888999999999999887655 79999832 1110 0012233331 1236999999
Q ss_pred CCCCCeEEEEEEEcCCCCcc--eeeEEEEEeeC--------------------CCceeeCCCcccccCCCCeEEEEeeee
Q psy535 120 NQNHQGRYTCTPYNAHGTQG--SSGQMEVLVRK--------------------PPAFTIKPEAMYQRKVGESVDMHCEAQ 177 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g~~~--~~~~~~v~v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~ 177 (460)
+.+|+|.|+|.+.+..+... ......|.|.. +|.+...|... .+..|+.++|.|.+
T Consensus 84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~- 161 (256)
T 3tf7_C 84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNK-VTVTGENVTLSCRQ- 161 (256)
T ss_dssp CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEE-EEETTCCEEECEEE-
T ss_pred CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEE-EEeCCCcEEEEEEc-
Confidence 99999999999998754221 12223444443 55666666654 57789999999998
Q ss_pred ccCCCCCCeeEEEcCCCccCC-----------------cccEEEe-----cceEEEccccceeceEEEEEEeccccee
Q psy535 178 EAEGTQKPTITWQRRDGVALP-----------------KNRVKIV-----GGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 178 ~~~~~p~~~~~W~~~~~~~~~-----------------~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.+. .+.+.|++....... ..++... ..+|.|.++..+|+|.|.|.|.|..|..
T Consensus 162 --~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 236 (256)
T 3tf7_C 162 --TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQL 236 (256)
T ss_dssp --CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred --CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence 454 679999973211100 1112211 2369999999999999999999876653
No 248
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.75 E-value=8.3e-18 Score=138.39 Aligned_cols=138 Identities=17% Similarity=0.220 Sum_probs=100.3
Q ss_pred CcccCcccceEEEeeC------CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEE
Q psy535 2 NTKVGSLETRVVIKKD------GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV 75 (460)
Q Consensus 2 ~~~~~~~~~r~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~ 75 (460)
+..+....+|+.+..+ ++|.|.+++.+|+|.|+|.|.+..+.. ...+.|.|..++..... ....+.+|+.+.
T Consensus 45 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~ 122 (202)
T 3bp6_B 45 ENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMRIDT-RILEVPGTGEVQ 122 (202)
T ss_dssp C--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCCCEEE-EEEECTTTCCEE
T ss_pred CCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcc-eEEEEEEecCCCCcccE-EEEecCCCCeEE
Confidence 3445566788888765 589999999999999999999988764 67788888765421110 112456799999
Q ss_pred EEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146 (460)
Q Consensus 76 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v 146 (460)
|.|.+.|.|.+ .+.|++++..+.. ......++ .+.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 123 l~C~~~g~P~p-~v~W~~~~~~~~~----~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v 191 (202)
T 3bp6_B 123 LTCQARGYPLA-EVSWQNVSVPANT----SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191 (202)
T ss_dssp EEEEEEEBSCC-EEEETTCCSCCEE----EEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC
T ss_pred EEEEccccCCc-eEEEEeCCCCccC----ceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEe
Confidence 99999998775 8999998876531 11222222 3567789999999999999999998655554444
No 249
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.75 E-value=3.2e-18 Score=143.07 Aligned_cols=173 Identities=20% Similarity=0.231 Sum_probs=118.0
Q ss_pred ceeeeecceeeEEEEEEEecC-CCC---CeEEEeeCCeecCcc-----------ccccEEEee--------cCeEEEeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKAN-PTF---QYVTWTKDKRLLEPY-----------QTKDIVVMQ--------NGSLLFTRV 119 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~-~~~---~~v~W~~~~~~~~~~-----------~~~~~~~~~--------~~~l~i~~~ 119 (460)
|....+.+|++++|.|.+.+. +.+ ..+.|+|++...... ...+..+.. +++|.|.++
T Consensus 6 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v 85 (221)
T 3eow_R 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGL 85 (221)
T ss_dssp CCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCS
T ss_pred CCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccC
Confidence 344567789999999999553 322 249999986532110 023333332 558999999
Q ss_pred CCCCCeEEEEEEEcCC-CCcceeeEEEEEeeCCCceeeCCCcccccCCCCeE-EEEeeeeccCCCCCCeeEEEcCCCccC
Q psy535 120 NQNHQGRYTCTPYNAH-GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV-DMHCEAQEAEGTQKPTITWQRRDGVAL 197 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~-g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~-~l~C~~~~~~~~p~~~~~W~~~~~~~~ 197 (460)
+.+|+|.|+|.+.+.. +. .+..+.|.|..+|.+...+... . ..|+.+ .|.|.+. .+.|.|.+.|++++....
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~--~~~~~~L~V~~~P~~~~~~~~~-~-~~g~~~~~l~C~~~--~g~P~p~v~W~k~~~~~~ 159 (221)
T 3eow_R 86 RVEDEGSYTCLFVTFPQGS--RSVDIWLRVLAKPQNTAEVQKV-Q-LTGEPVPMARCVST--GGRPPAQITWHSDLGGMP 159 (221)
T ss_dssp SCCCCSCBEEEEEESSSCS--CEEECCCCCCCCCEEEEEEECC-C-CCSSSCCEEEEEEE--SCSSCCCEEEECSSSCCC
T ss_pred ChHHCeEEEEEEEeCCCCc--eEEEEEEEEEECCCceeecCCc-c-cCCceEEEEEEECC--CccCCCeeEEEeCCCCCC
Confidence 9999999999999865 44 3555666677788877655443 2 568888 5999984 589999999987433222
Q ss_pred CcccEE-------EecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 198 PKNRVK-------IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 198 ~~~~~~-------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
...... ...+.|.|..+...|.|.|+|.|.|..+.....+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v~~ 210 (221)
T 3eow_R 160 QTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSL 210 (221)
T ss_dssp CCEEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEECC
T ss_pred ccceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEEEE
Confidence 111100 11236888999999999999999998877655554443
No 250
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.75 E-value=9.3e-17 Score=137.32 Aligned_cols=177 Identities=15% Similarity=0.220 Sum_probs=115.6
Q ss_pred ceeeeecceeeEEEEEEEecCCC-CCeEEEeeC--CeecC---------------ccccccEEEeecC-----eEEEeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKD--KRLLE---------------PYQTKDIVVMQNG-----SLLFTRV 119 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~-----~l~i~~~ 119 (460)
+....+.+|++++|.|.+.+.+. .+.+.|+|. +..+. .....++....+. +|.|.++
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (256)
T 3umt_A 9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL 88 (256)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence 33456889999999999988641 247999973 22110 1112344444332 3999999
Q ss_pred CCCCCeEEEEEEEcCCC--CcceeeEEEEEeeC----------------CCceeeCCCcccccCCCCeEEEEeeeeccCC
Q psy535 120 NQNHQGRYTCTPYNAHG--TQGSSGQMEVLVRK----------------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEG 181 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g--~~~~~~~~~v~v~~----------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 181 (460)
+.+|+|.|+|.+.+..+ .........|.|.. +|.+...|... .+..|+.++|.|.+ .+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~v~~G~~v~L~C~~---~~ 164 (256)
T 3umt_A 89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSL-SASLGERVSITCRA---SQ 164 (256)
T ss_dssp CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEE-EECTTCCEEEEEEE---SS
T ss_pred CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeE-EEECCCCEEEEEEE---ec
Confidence 99999999999988621 11122234455553 56666666654 68899999999999 67
Q ss_pred CCCCeeEEEcCCC--ccC------------CcccEEEe----cceEEEccccceeceEEEEEEeccccee-eeeeEEEEe
Q psy535 182 TQKPTITWQRRDG--VAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVVE 242 (460)
Q Consensus 182 ~p~~~~~W~~~~~--~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~ 242 (460)
.+.+.+.|++... .+. ...++... ..+|.|.++...|+|.|.|.+.|..... .....|.|.
T Consensus 165 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~ 244 (256)
T 3umt_A 165 DIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK 244 (256)
T ss_dssp CCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred CCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence 7888999998421 110 01233322 1259999999999999999999854332 233455665
Q ss_pred c
Q psy535 243 G 243 (460)
Q Consensus 243 ~ 243 (460)
.
T Consensus 245 ~ 245 (256)
T 3umt_A 245 R 245 (256)
T ss_dssp -
T ss_pred C
Confidence 4
No 251
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.75 E-value=4.1e-17 Score=138.15 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=110.5
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC----------ccccccEEEeec---CeEEEeecCCC
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE----------PYQTKDIVVMQN---GSLLFTRVNQN 122 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~ 122 (460)
.+...|....+.+|++++|.|.+.+.+.+ .+.|+|+. .... .....++..... .+|.|.+++.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGN-NLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE 81 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCc-eEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence 34567777889999999999999887754 79999953 1110 001234443322 36999999999
Q ss_pred CCeEEEEEEEcCCCCcceeeEEEEEeeCCCc-------------eeeCCCcccccCCCCeEEEEeeeeccCCCC--CCee
Q psy535 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA-------------FTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTI 187 (460)
Q Consensus 123 d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~ 187 (460)
|+|.|+|.+.|..+.. ......|.|..+|. ....+... .+..|+.++|.|.+ .+.+ .+.+
T Consensus 82 D~G~Y~C~~~n~~~~~-~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~g~~~~~~~v 156 (242)
T 2znx_A 82 DFGMYFCQQSNSXPYT-FGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPS-LVKPSQTLSLTCSV---TGDSITSDYX 156 (242)
T ss_dssp GCEEEEEEECSSSSCE-ECCCEEEEEC---------------CCEEEEECCS-EECTTSCEEEEEEE---ESSCGGGSCE
T ss_pred HCEEEEEeEecCCceE-ECCCEEEEEcCCCCCCcccccccccceeeecCCcc-eecCCCeEEEEEEE---EccccCCcce
Confidence 9999999999875432 22234555555542 22222233 57899999999998 5554 5789
Q ss_pred EEEcCC-CccC-----------------CcccEEEe------cceEEEccccceeceEEEEEEecc
Q psy535 188 TWQRRD-GVAL-----------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 188 ~W~~~~-~~~~-----------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.|++.+ +..+ ...++... ..+|.|.++..+|+|.|.|.|.|.
T Consensus 157 ~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 157 SXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 999843 1111 12344432 137999999999999999999873
No 252
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.75 E-value=1e-17 Score=142.62 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=109.3
Q ss_pred cceeeeecceeeEEEEEEEecCCCCC----eEEEeeCCeecCcc------ccccEEE-------------eecCeEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQ----YVTWTKDKRLLEPY------QTKDIVV-------------MQNGSLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~----~v~W~~~~~~~~~~------~~~~~~~-------------~~~~~l~i~~ 118 (460)
.|....+.+|++++|.|.+.+.|++. .+.|++++...... ....... ..+.+|.|.+
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 88 (248)
T 3pv7_A 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG 88 (248)
T ss_dssp TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence 44556788899999999998876652 49999964322100 0000000 0123599999
Q ss_pred cCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCcc
Q psy535 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVA 196 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~ 196 (460)
++.+|+|.|+|.+.+..+. ....+.|.|..+|.+.+.+.. .+..|..+.|.|.+ .+ .|.+ .+.|++++..+
T Consensus 89 v~~~D~G~Y~C~~~~~~~~--~~~~~~L~V~~~P~v~~~~~~--~~~~~~~~~L~C~~---~g~~P~pi~v~W~k~g~~l 161 (248)
T 3pv7_A 89 IQLEEAGEYRCEVVVTPLK--AQGTVQLEVVASPASRLLLDQ--VGMKENEDKYMCES---SGFYPEAINITWEKQTQKF 161 (248)
T ss_dssp CCGGGCEEEEEEEEETTEE--EEEEEEEEEEBCCEEEEECC----------CEEEEEE---EEEBSSCCEEEEEEECSSS
T ss_pred CCHHHCeEEEEEEEeCCcc--ceeEEEEEEecCCceEEecCC--ccccCCCcEEEEEE---ccEECCCeEEEEEECCccC
Confidence 9999999999999987665 345666777778888776654 34567888899999 45 7888 99999965422
Q ss_pred CCcc---------cEE-------EecceEEEccccceeceEEEEEEeccccee--eeeeEEEE
Q psy535 197 LPKN---------RVK-------IVGGNITIEGLRRVDFGYYECVVSNEVATI--VQAAQLVV 241 (460)
Q Consensus 197 ~~~~---------~~~-------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~--~~~~~l~v 241 (460)
.... ... .....|.+......|.|.|+|.|.|..+.. ...+.|.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 162 PHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp CSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred CCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 1110 011 112357777788888999999999988764 34444555
No 253
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.74 E-value=1e-16 Score=151.01 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=101.6
Q ss_pred ceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeec------CeEEEeecCCCCCeEEEEEEEcC
Q psy535 63 PTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
|....+.+|+.++|.|.+.+. |+...|+|+++|..+... .........+ +.|.|..+..+|.|.|+|.|.|.
T Consensus 304 p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~ 383 (512)
T 1zvo_C 304 PAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHP 383 (512)
T ss_pred CChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeC
Confidence 333345679999999999886 434579999999876411 1111111122 35889989999999999999998
Q ss_pred CCCcceeeEEEEEe----eCCCceeeCCCcccccCCCCeEE-EEeeeeccCCC-CC-CeeEEEcCCCccCCcccEE----
Q psy535 135 HGTQGSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVD-MHCEAQEAEGT-QK-PTITWQRRDGVALPKNRVK---- 203 (460)
Q Consensus 135 ~g~~~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~-l~C~~~~~~~~-p~-~~~~W~~~~~~~~~~~~~~---- 203 (460)
.+... ...+.+.. ..+|.+.+.+... .|+.+. |.|.+ .|. |. ..+.|++++. .+......
T Consensus 384 ~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~---~g~~P~~i~v~W~k~g~-~~~~~~~~~~~~ 454 (512)
T 1zvo_C 384 SLPPQ-RLMALREPAAQAPVKLSLNLLASSD----PPEAASWLLCEV---SGFSPPNILLMWLEDQR-EVNTSGFAPARP 454 (512)
T ss_pred CCCCC-ceeEEeecCCCCCCCCEEEEEccCc----CCCCceEEEEEE---eeeCCCCcEEEEEECCe-ECcCccccccce
Confidence 76543 33333221 2456655443321 688899 99999 564 43 3689999543 44322111
Q ss_pred -E-ecc-------eEEEccccceeceEEEEEEecccce
Q psy535 204 -I-VGG-------NITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 204 -~-~~~-------~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
. .++ .|.+......+.|.|+|.|.|....
T Consensus 455 ~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~ 492 (512)
T 1zvo_C 455 PPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSR 492 (512)
T ss_pred eECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCC
Confidence 1 122 2445555555699999999987654
No 254
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.74 E-value=7.6e-18 Score=145.34 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=105.0
Q ss_pred cCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC---
Q psy535 25 VGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE--- 99 (460)
Q Consensus 25 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~--- 99 (460)
..++|.+.|.|.+.+..|.. ... ....+...|....+.+|++++|.|.+.+ +. ..+.|+|. +....
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~-~~~------~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~-~~v~W~k~~~~~~~~~~~ 73 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGS-GGG------GGMKVIQTPRYLVKGQGQKAKMRCIPEK-GH-PVVFWYQQNKNNEFKFLI 73 (270)
T ss_dssp --------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TC-CEEEEEEECTTCCEEEEE
T ss_pred chhhhHHHHHHHHhccCCcc-ccc------cceeEEeCCCeEEEcCCCCEEEEEEecC-CC-ceEEEEEECCCCCcEEEE
Confidence 35789999999999877653 222 2233455677788899999999999865 33 47999982 21100
Q ss_pred ccc----------cc-cEEEee----cCeEEEeecCCCCCeEEEEEEEcCCCC--cceeeEEEEEeeC------CCceee
Q psy535 100 PYQ----------TK-DIVVMQ----NGSLLFTRVNQNHQGRYTCTPYNAHGT--QGSSGQMEVLVRK------PPAFTI 156 (460)
Q Consensus 100 ~~~----------~~-~~~~~~----~~~l~i~~~~~~d~G~y~C~~~~~~g~--~~~~~~~~v~v~~------~p~~~~ 156 (460)
... .. ++.... +.+|.|.+++.+|+|.|+|.+.+.... ........|.|.. +|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~ 153 (270)
T 3qib_D 74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV 153 (270)
T ss_dssp EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE
T ss_pred EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE
Confidence 000 00 343332 347999999999999999999864321 1122223444443 455444
Q ss_pred CCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCcccEE----------------EecceEEEcccccee
Q psy535 157 KPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKNRVK----------------IVGGNITIEGLRRVD 218 (460)
Q Consensus 157 ~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~ 218 (460)
.+.....+..|+.++|.|.+ .+ .|.+ .+.|+++ +..+...... .....|.|......|
T Consensus 154 ~~~~~~~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d 229 (270)
T 3qib_D 154 FEPSEAEISHTQKATLVCLA---TGFYPDHVELSWWVN-GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQN 229 (270)
T ss_dssp EECCHHHHHHHSEEEEEEEE---EEEBSSCEEEEEEET-TEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHS
T ss_pred ECCCccccccCCceEEEEEe---cceeCCCeEEEEEEC-CEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhcc
Confidence 32222244569999999998 44 6666 8999994 4444321110 112346666666666
Q ss_pred -ceEEEEEEecccce
Q psy535 219 -FGYYECVVSNEVAT 232 (460)
Q Consensus 219 -~g~y~C~a~n~~g~ 232 (460)
.|.|+|.+.|....
T Consensus 230 ~~g~YtC~v~~~~l~ 244 (270)
T 3qib_D 230 PRNHFRCQVQFYGLS 244 (270)
T ss_dssp TTCEEEEEEEECCBC
T ss_pred CCCeEEEEEEecCCC
Confidence 89999999987554
No 255
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=140.00 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=77.7
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK 93 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~ 93 (460)
+.|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|.. +|.+...+. ..+.+|++++|.|.+.+.| +.+.|+|
T Consensus 58 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~p--~~~~W~k 134 (196)
T 2d3v_A 58 ARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQCGSRLRF--DRFILTE 134 (196)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC--SEEEEEE
T ss_pred cEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCC-ccccCCCcEEEEEEcCCCC--CEEEEEc
Confidence 489999999999999999999976632 25567888876 455544443 4678899999999999887 3799999
Q ss_pred CCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 94 DKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 94 ~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
+|..+.+......... ..+.|.|.+++.+|+|.|+|.|.|..+
T Consensus 135 ~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 135 EGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp C---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred cCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence 9988753211111111 125799999999999999999998654
No 256
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.74 E-value=1.5e-17 Score=138.66 Aligned_cols=170 Identities=13% Similarity=0.156 Sum_probs=109.7
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC---------------ccccccEEEee-----cCeEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE---------------PYQTKDIVVMQ-----NGSLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~-----~~~l~i~~ 118 (460)
.|....+.+|++++|.|.+.+.+ ..+.+.|+|+ +..+. .....++.... ..+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 35556788999999999998865 2357999996 33221 01124444433 24799999
Q ss_pred cCCCCCeEEEEEEEcCCCCc--ceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEE
Q psy535 119 VNQNHQGRYTCTPYNAHGTQ--GSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQ 190 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~~--~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~ 190 (460)
++.+|+|.|+|.+.+..+.. .....+.|.|.. +|.+...+... .+..|+.++|.|.+ .+ .|.| .+.|+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W~ 161 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGS-AAQTNSMVTLGCLV---KGYFPEPVTVTWN 161 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCS-SSCCSSEEEEEEEE---EEEBSSCCEEEEG
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCcc-ccccCCeEEEEEEc---ccccCCCeEEEEE
Confidence 99999999999999876321 122233444443 25554433322 46789999999999 56 7888 99999
Q ss_pred cCCCccCC---cccEE-----EecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 191 RRDGVALP---KNRVK-----IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 191 ~~~~~~~~---~~~~~-----~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
+++. .+. ..... ...+.|.|.... .|.|.|+|.|.|..+......
T Consensus 162 ~~g~-~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~ 214 (219)
T 1c1e_H 162 SGSL-SSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDK 214 (219)
T ss_dssp GGTB-CTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEE
T ss_pred eCCc-ccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEE
Confidence 8543 321 01100 112357774444 356999999999887654433
No 257
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.74 E-value=2e-17 Score=138.31 Aligned_cols=142 Identities=21% Similarity=0.311 Sum_probs=95.9
Q ss_pred cccceEEEeeC------CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535 7 SLETRVVIKKD------GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 7 ~~~~r~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
...+|+.+..+ ++|.|.+++.+|+|.|+|.|.+ .+. ....+.|.|..++..........+.+|+.+.|.|.+
T Consensus 63 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~ 140 (222)
T 3sbw_C 63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140 (222)
T ss_dssp GGSSSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEE
T ss_pred cccCceEEccccccCCEEEEEEcCcccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEe
Confidence 34578888655 3899999999999999999999 443 366788888876654322222356789999999999
Q ss_pred ecCCCCCeEEEeeC-CeecCccccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535 81 KANPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153 (460)
Q Consensus 81 ~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~ 153 (460)
.|.|.+ .++|+++ +..+............++.+.+. .+..+|+|.|+|.|.|..|..... +.|.|..+|.
T Consensus 141 ~g~P~p-~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~--~~l~v~~~p~ 214 (222)
T 3sbw_C 141 EGYPKA-EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHT--AELVIPELPL 214 (222)
T ss_dssp EEBSCC-EEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEE--EEEECCCC--
T ss_pred cCCCCC-eEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeE--EEEEecCCcc
Confidence 998765 8999998 55543211111112223333322 456789999999999999876544 4455555553
No 258
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.74 E-value=6e-18 Score=128.12 Aligned_cols=118 Identities=27% Similarity=0.454 Sum_probs=97.1
Q ss_pred EEEEcCCCCCCCCC-cEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCC
Q psy535 319 VVGKNELGDGMLSN-IVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396 (460)
Q Consensus 319 ~~a~n~~G~~~~s~-~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~ 396 (460)
|.|.|..|.+..|. .+.+.+....|.+|.++.+...+ +++.|+|++|...++.|.+|.|+|+..+...
T Consensus 3 V~A~n~~G~g~~S~~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~---------- 72 (130)
T 1wfo_A 3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTA---------- 72 (130)
T ss_dssp CCCCCCCCCCCCCCCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCC----------
T ss_pred eEEEecccCCCCCCCcEEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCCCCCCceEEEEEEEEECCCCC----------
Confidence 56889999998887 48888888889999999998877 6999999999877889999999999754200
Q ss_pred cccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
..|. ........+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|.
T Consensus 73 -------------~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 122 (130)
T 1wfo_A 73 -------------NTAT-VEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE 122 (130)
T ss_dssp -------------SCCC-EEEECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCS
T ss_pred -------------ceEE-EEEeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEecC
Confidence 0010 0122356789999999999999999999999999999999998884
No 259
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.74 E-value=2.5e-17 Score=132.08 Aligned_cols=155 Identities=12% Similarity=0.134 Sum_probs=104.7
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeC-CeecC------------ccccccEEE-eecCeEEEeecCCCCCeEEEE
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKD-KRLLE------------PYQTKDIVV-MQNGSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~------------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C 129 (460)
....+.+|++++|.|.+.+..+.+.|.|+|+ +..+. .....|+.+ ..+++|.|.+++.+|+|.|+|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C 86 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence 3456788999999999855222357999994 32221 111245555 466789999999999999999
Q ss_pred EEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceE
Q psy535 130 TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNI 209 (460)
Q Consensus 130 ~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l 209 (460)
.+.+.. .....+.|.|..++.. |.. . ..+..++|.|.+. .+ |.|.+.|++++. .+. ...+.++
T Consensus 87 ~v~~~~---~~~~~~~L~V~~~~~~---P~i--~-~~~~~v~L~C~~~--~g-p~p~i~W~~~~~-~l~----~~~~~~l 149 (180)
T 2dru_A 87 RMLHET---EDQWKITMEVYEMVSK---PMI--Y-WECSNATLTCEVL--EG-TDVELKLYQGKE-HLR----SLRQKTM 149 (180)
T ss_dssp EEESSS---EEEEEEEEEEECCCCC---CEE--E-EEGGGTEEEEECS--SC-TTCEEEEEETTE-EEE----EESSSEE
T ss_pred EEEcCC---eEEEEEEEEEECCCCC---CEE--E-ecCCCEEEEEEeC--CC-CCCEEEEEECCe-ECc----CCCCCEE
Confidence 997755 3455666777655321 111 1 1345699999983 44 899999999544 332 2233455
Q ss_pred EEccccceeceEEEEEEecccceeeeee
Q psy535 210 TIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 210 ~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
.+.. ..|.|.|+|.|.|..+......
T Consensus 150 ~~~~--~~d~g~Y~C~a~N~~~~~~~~~ 175 (180)
T 2dru_A 150 SYQW--TNLRAPFKCKAVNRVSQESEME 175 (180)
T ss_dssp EEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred EEEE--hhcCccEEEEEecCcCccccce
Confidence 5532 6789999999999998766554
No 260
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.74 E-value=1e-16 Score=136.67 Aligned_cols=165 Identities=19% Similarity=0.307 Sum_probs=109.5
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe-----ec-------CccccccEEEeecC---eEEEeecCCC
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR-----LL-------EPYQTKDIVVMQNG---SLLFTRVNQN 122 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~-------~~~~~~~~~~~~~~---~l~i~~~~~~ 122 (460)
.+...|....+.+|++++|.|.+.+.+.+ .+.|+|+.. .+ ......++.....+ +|.|.+++.+
T Consensus 6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 6 VLIQSTSSLSASLGDRVTISCRASQDIRN-YLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CEECSCSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eEEecCCEEEeeCCCcEEEEEEecccCCc-eEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 34456777788999999999999998776 799999431 00 01112344333322 6999999999
Q ss_pred CCeEEEEEEEcCCCCcceeeEEEEEeeCC-------------------CceeeCCCcccccCCCCeEEEEeeeeccCCCC
Q psy535 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKP-------------------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183 (460)
Q Consensus 123 d~G~y~C~~~~~~g~~~~~~~~~v~v~~~-------------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p 183 (460)
|+|.|+|.+.|..+... .....|.|..+ +.....+... .+..|+.++|.|.+ .+.+
T Consensus 85 D~G~Y~C~~~n~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~~~~ 159 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTF-GGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE-LVKPGASVKISCKD---SGYA 159 (250)
T ss_dssp GCEEEEEEECSSSSCEE-CCCEEEEEC------------------------CEECCCE-EECTTCCEEEEEEC---CSTT
T ss_pred hCEEEEEEEeeCCCceE-CCCEEEEEECCCCcccccccccccccCcccceEEecCCce-EEcCCceEEEEEEe---cCCc
Confidence 99999999998655431 22234444432 2222333333 57899999999998 5655
Q ss_pred --CCeeEEEcCC-CccC------------------CcccEEEec------ceEEEccccceeceEEEEEEec
Q psy535 184 --KPTITWQRRD-GVAL------------------PKNRVKIVG------GNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 184 --~~~~~W~~~~-~~~~------------------~~~~~~~~~------~~l~i~~~~~~~~g~y~C~a~n 228 (460)
.+.+.|+++. +..+ ...++.... .+|.|.++..+|+|.|.|.+.+
T Consensus 160 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 160 FSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp GGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred ccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 7899999852 1111 012333321 1599999999999999999997
No 261
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.74 E-value=1.1e-17 Score=141.99 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=94.8
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCC----CcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeE
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIG----EPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYV 89 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v 89 (460)
++.|.|.+++.+|+|.|+|.+.+... ...+..+.|.|.. +|.+...|. ..+.+|++++|.|.+.+.+ ..+
T Consensus 61 ~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~--~~~ 137 (257)
T 1b6u_A 61 KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY--DMY 137 (257)
T ss_dssp EEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC--SEE
T ss_pred eEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC--cEE
Confidence 35899999999999999999986432 2235667888864 355555554 4678899999999998754 379
Q ss_pred EEeeCCeecCccccccEEE--eecCeEEEeecCCCCCeEEEEEEEcCCC---CcceeeEEEEEeeCCCceeeCCCccccc
Q psy535 90 TWTKDKRLLEPYQTKDIVV--MQNGSLLFTRVNQNHQGRYTCTPYNAHG---TQGSSGQMEVLVRKPPAFTIKPEAMYQR 164 (460)
Q Consensus 90 ~W~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~g---~~~~~~~~~v~v~~~p~~~~~~~~~~~~ 164 (460)
.|+|+|..+.......... ..++.|.|.+++ |+|.|+|.+.+... ....+..+.|.|..+|.+...+......
T Consensus 138 ~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~ 215 (257)
T 1b6u_A 138 HLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSS 215 (257)
T ss_dssp EEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC------------
T ss_pred EEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCc
Confidence 9999998764321111000 124579999998 99999999997532 3345778899999888765222112234
Q ss_pred CCCCeEEEEeeeeccCCCCCCeeEEEcCC
Q psy535 165 KVGESVDMHCEAQEAEGTQKPTITWQRRD 193 (460)
Q Consensus 165 ~~g~~~~l~C~~~~~~~~p~~~~~W~~~~ 193 (460)
..|..+.|.|.+ |.+.+.+.|...+
T Consensus 216 ~~g~~~~l~~~~----~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 216 ETGNPRHLHAAA----EQKLISEEDLNLD 240 (257)
T ss_dssp -----------------------------
T ss_pred cCCCeEEEEEEE----cchHHHHHHhhhh
Confidence 568899999985 7788889998644
No 262
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.74 E-value=1.1e-17 Score=142.75 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=100.2
Q ss_pred CcccceEEEeeC--CeEEEeecCCCCCeeEEEEEEeCCCCcc----eeeeEEEEecC---CeeEE-cceeeeecceeeEE
Q psy535 6 GSLETRVVIKKD--GTLVINPVGSDDSGLYMCEVSNGIGEPQ----AAQAYLNVEFP---AKVTF-TPTVQYLPFRLQGV 75 (460)
Q Consensus 6 ~~~~~r~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~---p~~~~-~~~~~~~~~g~~~~ 75 (460)
....+|+.+..+ ++|.|.+++.+|+|.|+|.+.+..+... ...+.|.|..+ +.+.+ .+....+.+|+++.
T Consensus 76 ~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~ 155 (250)
T 2fbo_J 76 GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDIT 155 (250)
T ss_dssp GGGTTTEECSCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEE
T ss_pred CCcCceEEeccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEE
Confidence 345678888763 5999999999999999999999876431 34778888764 34443 34456677899999
Q ss_pred EEEEEecCCCCCeEEEeeCCeecCccc----------------------cccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535 76 VQCHIKANPTFQYVTWTKDKRLLEPYQ----------------------TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 76 l~C~~~~~~~~~~v~W~~~~~~~~~~~----------------------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
|.|.+.+.|.+ .|+|+|++..+.... ..+......+.|.|.++..+|+|.|+|.|.|
T Consensus 156 L~C~~~g~p~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 234 (250)
T 2fbo_J 156 MTCPCTDCANA-NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELAT 234 (250)
T ss_dssp ECCCEESCTTC-EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEecCCCCC-eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecC
Confidence 99999998877 899999988774311 1222222346899999999999999999999
Q ss_pred CCCCc
Q psy535 134 AHGTQ 138 (460)
Q Consensus 134 ~~g~~ 138 (460)
..|..
T Consensus 235 ~~g~~ 239 (250)
T 2fbo_J 235 GQGEL 239 (250)
T ss_dssp SSSGG
T ss_pred Ccccc
Confidence 77644
No 263
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.74 E-value=2.9e-17 Score=138.92 Aligned_cols=172 Identities=12% Similarity=0.181 Sum_probs=112.8
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eec----------CccccccEEEe---ecCeEEEeecCC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLL----------EPYQTKDIVVM---QNGSLLFTRVNQ 121 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~----------~~~~~~~~~~~---~~~~l~i~~~~~ 121 (460)
+.+...|....+.+|++++|.|.+.+.+.+ .+.|+|.. ... ......++... .+.+|.|.+++.
T Consensus 25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 25 IQMTQSPSSLSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 103 (237)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceEEeCCCeEEEeCCCcEEEEEecCCCCCc-eEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence 345566777889999999999999887654 79999832 110 00112344433 234699999999
Q ss_pred CCCeEEEEEEEcCCCCcc-eeeEEEEEe-eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccCC
Q psy535 122 NHQGRYTCTPYNAHGTQG-SSGQMEVLV-RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVALP 198 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~~~-~~~~~~v~v-~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~~ 198 (460)
+|+|.|+|.+.+..+... ....+.|.. ..+|.+...+... .+..|+.++|.|.+. .+.| .+.+.|++++. .+.
T Consensus 104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~l~C~~~--~~~p~~~~v~W~k~g~-~~~ 179 (237)
T 3sob_L 104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLLN--NFYPREAKVQWKVDNA-LQS 179 (237)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCH-HHHHHTEEEEEEEEE--EEBSSCCEEEEEETTE-ECC
T ss_pred hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCCh-hhccCCceEEEEEEc--ccCCCceEEEEEECCC-CCC
Confidence 999999999987664321 122333332 4466665544433 344588899999994 3345 58999999543 333
Q ss_pred ccc------------EEEecceEEEccccceeceEEEEEEeccccee
Q psy535 199 KNR------------VKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 199 ~~~------------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
... .......|.|.....+|.|.|+|.|.|.....
T Consensus 180 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 226 (237)
T 3sob_L 180 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 226 (237)
T ss_dssp SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred CceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence 211 00112357788888888999999999986543
No 264
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.74 E-value=1.9e-16 Score=137.29 Aligned_cols=178 Identities=16% Similarity=0.229 Sum_probs=116.7
Q ss_pred EcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEe
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFT 117 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~ 117 (460)
..|....+.+|++++|.|.+.+.+ +.+.+.|+|++ ..+. .....++.... ..+|.|.
T Consensus 31 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 110 (282)
T 1qok_A 31 QQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS 110 (282)
T ss_dssp EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence 456677888999999999998875 23479999953 1110 01124554443 1479999
Q ss_pred ecCCCCCeEEEEEEEcCCCC---cceeeEEEEEeeCC---------------CceeeCCCcccccCCCCeEEEEeeeecc
Q psy535 118 RVNQNHQGRYTCTPYNAHGT---QGSSGQMEVLVRKP---------------PAFTIKPEAMYQRKVGESVDMHCEAQEA 179 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~ 179 (460)
+++.+|+|.|+|.+.|..|. ........|.|..+ +.+...|... .+..|+.++|.|.+
T Consensus 111 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~v~~G~~v~L~C~~--- 186 (282)
T 1qok_A 111 SLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIM-SASPGEKVTITCSA--- 186 (282)
T ss_dssp SCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEE-EECTTCCEEEEEEE---
T ss_pred cCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEE-EEcCCCcEEEEEEe---
Confidence 99999999999999987651 11112234555443 3344445443 68899999999999
Q ss_pred CCCCCCeeEEEcC--CCccC------------CcccEEEe----cceEEEccccceeceEEEEEEecccce-eeeeeEEE
Q psy535 180 EGTQKPTITWQRR--DGVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVAT-IVQAAQLV 240 (460)
Q Consensus 180 ~~~p~~~~~W~~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~-~~~~~~l~ 240 (460)
.+.+ +.+.|++. +..+. ...++... ..+|.|.++...|+|.|.|.+.|..+. ......|.
T Consensus 187 ~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~ 265 (282)
T 1qok_A 187 SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLE 265 (282)
T ss_dssp SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEE
T ss_pred cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEE
Confidence 6777 89999983 22220 12334322 236999999999999999999875432 22334555
Q ss_pred Eec
Q psy535 241 VEG 243 (460)
Q Consensus 241 v~~ 243 (460)
|..
T Consensus 266 V~~ 268 (282)
T 1qok_A 266 LKR 268 (282)
T ss_dssp EC-
T ss_pred Eec
Confidence 543
No 265
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.73 E-value=8.7e-18 Score=137.46 Aligned_cols=128 Identities=14% Similarity=0.219 Sum_probs=94.7
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCC-CcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK 93 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~ 93 (460)
++|.|.+++.+|+|.|+|.|.|..| ...+..+.|.|.. +|.+...+.. .+.+|++++|.|.+.+.+ ..+.|+|
T Consensus 58 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~~--~~~~w~k 134 (196)
T 3p2t_A 58 ARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSPM--DTFLLCK 134 (196)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEEE--EEEEEEE
T ss_pred EEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCCC--CEEEEEe
Confidence 5899999999999999999999887 3346677888864 4555555543 678899999999998843 3799999
Q ss_pred CCeecCcccccc--EEEeecCeEEEeecCCCCCeEEEEEEEcCCCC---cceeeEEEEEe
Q psy535 94 DKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT---QGSSGQMEVLV 148 (460)
Q Consensus 94 ~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v 148 (460)
+|..+....... ......+.|.|.+++.+|+|.|+|.|.|..+. ...+..+.|.|
T Consensus 135 ~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 135 ERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp TTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred CCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 998764322111 11234567999999999999999999997652 22444555555
No 266
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.73 E-value=1e-16 Score=135.79 Aligned_cols=166 Identities=15% Similarity=0.271 Sum_probs=112.0
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCC---CCCeEEEeeCC--eecC----------ccccccEEEeecC---eEEEeec
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANP---TFQYVTWTKDK--RLLE----------PYQTKDIVVMQNG---SLLFTRV 119 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~~---~l~i~~~ 119 (460)
.+...|....+.+|++++|.|.+.+.+ ..+.+.|+|+. ..+. .....++.....+ +|.|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV 82 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence 345567778899999999999999887 24479999952 2110 0112344443322 6999999
Q ss_pred CCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC------ceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEc
Q psy535 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP------AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQR 191 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~ 191 (460)
+.+|+|.|+|.+.|..+.. ......|.|..++ .+...+... .+..|+.++|.|.+ .+.| .+.+.|++
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~g~p~~~~~v~W~k 157 (240)
T 1moe_A 83 EADDVATYYCQQTNEDPYT-FGGGTKLEIKGGGSGGGGEVQLQQSGAE-LVEPGASVKLSCTA---SGFNIKDTYMHWVK 157 (240)
T ss_dssp CGGGCEEEEEEECSSSSCC-BCCCEEEEECCCSCCCCCCCEEEECCCE-EECTTCCEEEEEEE---ESSCGGGSCEEEEE
T ss_pred ChhhCEEEEEEEccCCcee-ecCCEEEEEecCCCCCCceEEEeCCCce-EEeCCCcEEEEEEE---cCccCCCCEEEEEE
Confidence 9999999999999876542 2223344454432 233334444 67899999999999 5665 46999998
Q ss_pred CC-CccC------------------CcccEEEec------ceEEEccccceeceEEEEEEec
Q psy535 192 RD-GVAL------------------PKNRVKIVG------GNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 192 ~~-~~~~------------------~~~~~~~~~------~~l~i~~~~~~~~g~y~C~a~n 228 (460)
++ +... ...++.... ..|.|.++..+|+|.|.|.|.+
T Consensus 158 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 158 QRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp ECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred ECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 52 1111 112344331 3699999999999999999984
No 267
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.73 E-value=1.9e-17 Score=138.80 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=91.9
Q ss_pred ccceEEEeeC------CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535 8 LETRVVIKKD------GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 8 ~~~r~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
+..|+....+ ++|.|.+++.+|+|.|+|.|.|..+.. ...+.+..++.+...+....+.+|+.+.|.|.+.
T Consensus 67 ~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~---~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~ 143 (226)
T 4f80_A 67 YRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYE---KALVELKVAALGSDLHVDVKGYKDGGIHLECRST 143 (226)
T ss_dssp TTTTEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEE---EEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEE
T ss_pred ccceEEEecccccCCeEEEEEeeCchHHCeeEEEEEECCCcEE---EEEEEEeeccceecccceeeeccCCceeeEEEec
Confidence 3456665543 389999999999999999999977653 3445554444444445556677899999999998
Q ss_pred cCCCCCeEEEeeCCeecCccccccEEEeecCe---EEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC
Q psy535 82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP 151 (460)
Q Consensus 82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~ 151 (460)
+..+++.|+|++++..+.+.....+....++. +.+.+++.+|+|.|+|.|.|..|..+.+ +.|.|.+|
T Consensus 144 g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~--~~v~v~ep 214 (226)
T 4f80_A 144 GWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKT--ASISIADP 214 (226)
T ss_dssp EEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEE--EEECCCTT
T ss_pred cCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEE--EEEEECCC
Confidence 85334489999976554433333344444443 3445678899999999999999886554 44555443
No 268
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.73 E-value=3.2e-17 Score=136.43 Aligned_cols=166 Identities=13% Similarity=0.243 Sum_probs=107.9
Q ss_pred ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC----------ccccccEEEeecC---eEEEeecCCCCCeE
Q psy535 63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE----------PYQTKDIVVMQNG---SLLFTRVNQNHQGR 126 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~~---~l~i~~~~~~d~G~ 126 (460)
|....+.+|++++|.|.+.+.+ ..+.+.|+|++ ..+. .....++.....+ +|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 6667888999999999954433 23479999953 2210 1112344443332 79999999999999
Q ss_pred EEEEEEcCCCCcceeeEEEEEee---CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCcc-
Q psy535 127 YTCTPYNAHGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKN- 200 (460)
Q Consensus 127 y~C~~~~~~g~~~~~~~~~v~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~- 200 (460)
|+|.+.|..+.........|.|. .+|.+...+... ....|+.++|.|.+ .+ .|.+ .+.|++++ ..+...
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~g-~~~~~~~ 161 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLL---NNFYPREAKVQWKVDN-ALQSGNS 161 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEE---EEEBSSCCEEEEEETT-EECCSSE
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCCh-hhccCCcEEEEEEE---EeEcCCceEEEEEECC-eecCCCe
Confidence 99999987762112222334444 466666543332 22358899999998 44 5554 89999954 444332
Q ss_pred cEE-----------EecceEEEccccceeceEEEEEEeccccee
Q psy535 201 RVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 201 ~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
... .....|.|..+...|.|.|+|.|.|.....
T Consensus 162 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 162 QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred eEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 111 011258888888899999999999976543
No 269
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.73 E-value=7e-17 Score=130.69 Aligned_cols=122 Identities=16% Similarity=0.308 Sum_probs=95.4
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee---CC
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK---DK 95 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~---~~ 95 (460)
.|.|. +.+|+|.|+|.|.|. ....+.|.|..+|.+...+....+.+|+++.|.|.+.+.|+++.+.|++ ++
T Consensus 52 ~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~ 125 (184)
T 3b5h_A 52 EFKVD--SDDQWGEYSCVFLPE----PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSE 125 (184)
T ss_dssp EEEEC--GGGCCEEEEEEEEST----TSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSS
T ss_pred EEEEe--chhhCeEEEEEEECC----cCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCC
Confidence 45555 689999999999982 2467899999999988888778889999999999999988445899999 44
Q ss_pred ee-cCccccccEEEeecC---eEEEeecC-CCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 96 RL-LEPYQTKDIVVMQNG---SLLFTRVN-QNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 96 ~~-~~~~~~~~~~~~~~~---~l~i~~~~-~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
.. +......++.+..++ .|.|.++. .+|+|.|+|.|.|..|..... +.|.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~--~~l~V 181 (184)
T 3b5h_A 126 DKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI--ITLRV 181 (184)
T ss_dssp CEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEE--EEEEE
T ss_pred CEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEE--EEEEE
Confidence 44 332233555555444 79999999 899999999999999886554 44444
No 270
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.73 E-value=8.2e-17 Score=134.32 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=111.2
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--ee---cC--------------ccccccEEEeec---C--eEEE
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RL---LE--------------PYQTKDIVVMQN---G--SLLF 116 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~---~--~l~i 116 (460)
.|....+.+|++++|.|.+.+.+ ....+.|+|++ .. +. +....++....+ + +|.|
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 35556788999999999998765 23479999953 11 10 001245554432 2 7999
Q ss_pred eecCCCCCeEEEEEEEcCCCCc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEE
Q psy535 117 TRVNQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITW 189 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W 189 (460)
.+++.+|+|.|+|.+.+..+.. .......|.|. .+|.+...+... .+..|+.++|.|.+ .+. |.| .+.|
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W 161 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGC-SDTSGSSVTLGCLV---KGYFPEPVTVKW 161 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCS-CCSCSSSEEEEEEE---EEEBSSCCEEEE
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccccc-ccCCCCcEEEEEEE---EEEeCCCeEEEE
Confidence 9999999999999999865321 11122334443 345554433332 45789999999999 455 888 9999
Q ss_pred EcCCCc----cCCcc---cEEEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 190 QRRDGV----ALPKN---RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 190 ~~~~~~----~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
++++.. ..+.. ......+.|.|......+ |.|+|.|.|..|.....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 215 (220)
T 1pz5_B 162 NYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK 215 (220)
T ss_dssp GGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred ecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence 986542 11110 111224568888887755 999999999998755443
No 271
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.73 E-value=1.5e-17 Score=138.55 Aligned_cols=122 Identities=23% Similarity=0.410 Sum_probs=98.9
Q ss_pred EEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec-CCeeEEcceeeeecceeeEEEEEEE-ecCCCCCeEEEeeCCeec
Q psy535 21 VINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRLL 98 (460)
Q Consensus 21 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~~ 98 (460)
.|.+++.+|+|.|+|.+.|..|...+..+.|.|.. ++.+...+....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+
T Consensus 72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~g~~~ 150 (217)
T 2vr9_A 72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP-TLIWIKDGVPL 150 (217)
T ss_dssp CCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC-EEEEEETTEEE
T ss_pred EeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC-eEEEEECCcCC
Confidence 68899999999999999998876545567777764 5666667777888999999999999 777765 79999999988
Q ss_pred Ccc------ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535 99 EPY------QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143 (460)
Q Consensus 99 ~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~ 143 (460)
... ...+.....++.|.|.++..+|+|.|+|.|.|..|....+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 201 (217)
T 2vr9_A 151 DDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201 (217)
T ss_dssp CCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCE
T ss_pred CcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccE
Confidence 631 234555566778999999999999999999999988755433
No 272
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.73 E-value=3.5e-17 Score=130.91 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=88.3
Q ss_pred cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcc-eeeeEEEEecC---CeeEEcceeeeecceeeEEEEEEEec
Q psy535 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQ-AAQAYLNVEFP---AKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
..++|+++..+|+|.|.+++.+|+|.|+|.|.|..|... ...+.|.|..+ |.+.. .+..++|.|.+.+
T Consensus 55 ~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~ 126 (182)
T 1hnf_A 55 KEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMN 126 (182)
T ss_dssp ESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSS
T ss_pred CCCCeEEECCCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccC
Confidence 457899999999999999999999999999999887642 35667888753 23222 2236899999998
Q ss_pred CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
.|.+ .++|+++|..+ . . ....|.+.. ..+|+|.|+|.|.|..+.....
T Consensus 127 ~p~~-~~~W~~~g~~l-~-~-------~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~ 174 (182)
T 1hnf_A 127 GTDP-ELNLYQDGKHL-K-L-------SQRVITHKW-TTSLSAKFKCTAGNKVSKESSV 174 (182)
T ss_dssp CSSC-EEEEEESSCEE-E-E-------ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEE
T ss_pred CCCC-EEEEEECCEEC-C-C-------CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEc
Confidence 8754 89999999887 1 1 223344433 5789999999999998876444
No 273
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=134.41 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=93.5
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWT 92 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~ 92 (460)
++.|.|.+++.+|+|.|+|.+.|..|. ..+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+.+ +.+.|+
T Consensus 51 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~--~~~~w~ 127 (184)
T 2gi7_A 51 QAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF--DQFALY 127 (184)
T ss_dssp SSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC--CEEEEE
T ss_pred ccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC--cEEEEE
Confidence 358999999999999999999997753 235567788853 45566666 45677899999999987654 379999
Q ss_pred eCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC---cceeeEEEEEe
Q psy535 93 KDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT---QGSSGQMEVLV 148 (460)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v 148 (460)
|+|..+.... ......+.|.|.+++.+|+|.|+|.|.|..+. ...+..+.|.|
T Consensus 128 k~g~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 183 (184)
T 2gi7_A 128 KEGDPAPYKN---PERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV 183 (184)
T ss_dssp ECCCCTTSCC---CCEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred ECCCcCccee---cCCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence 9998875411 12234557999999999999999999997543 22344555543
No 274
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.73 E-value=9e-18 Score=139.49 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=98.2
Q ss_pred ccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCC--CcceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIG--EPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
.++|+.+... ++|.|.+++.+|+|.|+|.|.+..+ ......+.|.|. .+|.+...+....+.+|+.++|.|
T Consensus 57 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C 136 (213)
T 3mj8_L 57 IPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVC 136 (213)
T ss_dssp SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEE
T ss_pred ccCcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEE
Confidence 5578886543 3899999999999999999999887 233566888888 677777766655566899999999
Q ss_pred EEecCCCC-CeEEEeeCCeecCcccccc--E----EEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 79 HIKANPTF-QYVTWTKDKRLLEPYQTKD--I----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 79 ~~~~~~~~-~~v~W~~~~~~~~~~~~~~--~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
.+.+.+++ ..++|+++|..+....... . .....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus 137 ~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3mj8_L 137 MINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT 202 (213)
T ss_dssp EEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred EeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence 99986433 4899999999885321100 0 1111245899999999999999999997754
No 275
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.73 E-value=6.8e-18 Score=140.41 Aligned_cols=173 Identities=13% Similarity=0.174 Sum_probs=110.1
Q ss_pred CCeeEEcceeee--ecceeeEEEEEEEecCC---CCCeEEEeeCCeecCccccccE------EEeecCeEEEeecCCCCC
Q psy535 56 PAKVTFTPTVQY--LPFRLQGVVQCHIKANP---TFQYVTWTKDKRLLEPYQTKDI------VVMQNGSLLFTRVNQNHQ 124 (460)
Q Consensus 56 ~p~~~~~~~~~~--~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~ 124 (460)
+|.+.+.|.... +.+|++++|.|.+.+.+ +.+.|+|+|++..+........ .....+.|.|.+++.+|+
T Consensus 9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~ 88 (218)
T 2rgs_A 9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSG 88 (218)
T ss_dssp CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTT
T ss_pred CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCC
Confidence 445544444433 67899999999998873 3358999999987642111000 111234699999999999
Q ss_pred eEEEEEEEcCCCCcceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCcc
Q psy535 125 GRYTCTPYNAHGTQGSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKN 200 (460)
Q Consensus 125 G~y~C~~~~~~g~~~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~ 200 (460)
|.|+|.|.|..+.......+.+ .+..+|.+.+.+.... ...|+.++|.|.+ .| .|.+ .+.|++++.......
T Consensus 89 g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~---~g~~P~~~~v~W~k~g~~~~~~~ 164 (218)
T 2rgs_A 89 KEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE-QLSRKDVSLTCLV---VGFNPGDISVEWTSNGHTEENYK 164 (218)
T ss_dssp CCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG-GTTSSEEEEEEEE---EEEBSSCCEEEEEETTEEECCEE
T ss_pred CeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH-HhcCCceEEEEEE---EeeeCCCcEEEEEECCEeccCce
Confidence 9999999998665422333322 4556787766655432 3359999999999 55 5665 999999554332111
Q ss_pred c--EE-Eecce------EEEccccceeceEEEEEEecccce
Q psy535 201 R--VK-IVGGN------ITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 201 ~--~~-~~~~~------l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
. .. ..+++ |.+......|.|.|+|.|.|....
T Consensus 165 ~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 165 DTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp ECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred ecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 1 11 12233 333333444589999999997544
No 276
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.73 E-value=1.8e-17 Score=137.42 Aligned_cols=128 Identities=17% Similarity=0.184 Sum_probs=94.6
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD 94 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~ 94 (460)
.|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+.+. +.+.|+|+
T Consensus 65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~-~~~~W~k~ 142 (218)
T 1uct_A 65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPF-DRFSLAKE 142 (218)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCC-SEEEEEET
T ss_pred EEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCC-CEEEEEEC
Confidence 8999999999999999999997653 224567778764 45565555 456789999999997666554 47999999
Q ss_pred CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC---CcceeeEEEEEeeCC
Q psy535 95 KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG---TQGSSGQMEVLVRKP 151 (460)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g---~~~~~~~~~v~v~~~ 151 (460)
|..+.. .......++.|.|.+++.+|+|.|+|.|.|... ....+..+.|.|...
T Consensus 143 g~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 143 GELSLP---QHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp TCSSCC---SEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred CCcccc---cccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 987653 112223456799999999999999999997532 233566777777654
No 277
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=132.85 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=88.4
Q ss_pred cceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe---eEEcceeeeeccee-eEEEEEEEecCC
Q psy535 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK---VTFTPTVQYLPFRL-QGVVQCHIKANP 84 (460)
Q Consensus 9 ~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~-~~~l~C~~~~~~ 84 (460)
.+|+.+..+++|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..++. +...+ .....|. +++|.|.+.+.+
T Consensus 61 ~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~ 137 (193)
T 2if7_A 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAK-LSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDAD 137 (193)
T ss_dssp HTTEEECTTCCEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCC
T ss_pred cccEEECCCeEEEECCCCcccCceEEEEEEecCCCe-EEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCC
Confidence 368898888899999999999999999999987764 4578888876543 22222 1223454 799999999966
Q ss_pred CCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCC-CCeEEEEEEEcCCCCc
Q psy535 85 TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 85 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~g~~ 138 (460)
+.+.|+|+++|..+. ..+.|.|.....+ |+|.|+|.|.|..|..
T Consensus 138 p~p~i~W~~~g~~l~----------~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~ 182 (193)
T 2if7_A 138 DNVSFRWEALGNTLS----------SQPNLTVSWDPRISSEQDYTCIAENAVSNL 182 (193)
T ss_dssp TTCEEEEEETTEEEE----------SSSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred CceEEEEEeCCEEcC----------CCCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence 555899999988653 2345777655554 8999999999998875
No 278
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.73 E-value=1.8e-17 Score=137.29 Aligned_cols=131 Identities=21% Similarity=0.259 Sum_probs=94.7
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEe
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
..+|+.+..++ +|.|.+++.+|+|.|+|.|.+..+........|.|.. +|.+...+.......|+.++|.|.+.
T Consensus 57 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~ 136 (210)
T 1lk3_L 57 VPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMN 136 (210)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEE
T ss_pred ccccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEE
Confidence 35788887554 8999999999999999999998765434455777765 56666544433344788999999998
Q ss_pred cC-CCCCeEEEeeCCeecCcc-c-cccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 82 AN-PTFQYVTWTKDKRLLEPY-Q-TKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 82 ~~-~~~~~v~W~~~~~~~~~~-~-~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
+. |++..|.|+|+|..+... . ........+ +.|.|.++..+|+|.|+|.|.|.....
T Consensus 137 g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 137 NFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp EEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred eEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 74 443479999999987642 0 000001111 269999999999999999999876544
No 279
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.73 E-value=3.9e-18 Score=146.06 Aligned_cols=214 Identities=12% Similarity=0.141 Sum_probs=85.5
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceeeEEEEEEEecCCCCC--eEEEeeCC
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQGVVQCHIKANPTFQ--YVTWTKDK 95 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~ 95 (460)
.|.|.+++.+ |.|+|.+. ..+......+.|.|+.+|. +.+.+....+.+|+.++|.|.+.+..++. .|+|+|++
T Consensus 51 ~~~l~~v~~~--~~y~C~~~-~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~ 127 (291)
T 1mq8_A 51 VYELSNVQED--SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE 127 (291)
T ss_dssp EEEEESCCSC--CCCEEEEE-CSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSS
T ss_pred EEEEEecccC--CeEEEEEE-cCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECC
Confidence 4889998854 46999996 4445557778899987665 34444445578899999999998875543 58999999
Q ss_pred eecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC------cceeeEEEEEeeCCCceeeC-CCcccccCCCC
Q psy535 96 RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT------QGSSGQMEVLVRKPPAFTIK-PEAMYQRKVGE 168 (460)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~------~~~~~~~~v~v~~~p~~~~~-~~~~~~~~~g~ 168 (460)
..+...... ......+|.+.....+|.+.|+|+|.+..+. ...+....+.|.++|..... .... .+..|+
T Consensus 128 ~~l~~~~~~--~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~-~l~eG~ 204 (291)
T 1mq8_A 128 KELKREPAV--GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPR-VLEVDT 204 (291)
T ss_dssp SEEEEEECC--BTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC---------------------
T ss_pred EEeecccCC--CCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCc-CccCCC
Confidence 887532210 0011234666666666777999999987552 12355567777777532111 1111 467899
Q ss_pred eEEEEeeeeccCCCCCC---eeEEEcCCCccCCcccEEEecceEEEccc---cc--eeceEEEEEEecccceeeeeeEEE
Q psy535 169 SVDMHCEAQEAEGTQKP---TITWQRRDGVALPKNRVKIVGGNITIEGL---RR--VDFGYYECVVSNEVATIVQAAQLV 240 (460)
Q Consensus 169 ~~~l~C~~~~~~~~p~~---~~~W~~~~~~~~~~~~~~~~~~~l~i~~~---~~--~~~g~y~C~a~n~~g~~~~~~~l~ 240 (460)
.++|.|.+ .|.+++ .+.|++++. .+... ....++.+.+... .. ++.+.|+|.+.+..........|.
T Consensus 205 ~v~l~C~~---~g~~P~~~~~v~w~~~g~-~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~ 279 (291)
T 1mq8_A 205 QGTVVCSL---DGLFPVSEAQVHLALGDQ-RLNPT-VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 279 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEc---CCCCCCcccEEEEEECCE-ecCce-eeecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEE
Confidence 99999999 565443 689988444 44322 1222333433333 23 335677888887544455555566
Q ss_pred Eec
Q psy535 241 VEG 243 (460)
Q Consensus 241 v~~ 243 (460)
|..
T Consensus 280 v~~ 282 (291)
T 1mq8_A 280 IYS 282 (291)
T ss_dssp ---
T ss_pred EEc
Confidence 643
No 280
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Probab=99.73 E-value=7.8e-16 Score=133.79 Aligned_cols=174 Identities=17% Similarity=0.236 Sum_probs=126.2
Q ss_pred CCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecC-CCCeeeeeccCCCCceEEEccCccCccEEEEEEE
Q psy535 244 TQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG-NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 321 (460)
Q Consensus 244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a 321 (460)
.+|.+|.++.. .....++.|+|.++. ..+.+|.+.|+... ...|..... ......+.|.+|.+++.|.|++.|
T Consensus 13 ~~p~~P~~l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a 87 (283)
T 1tdq_A 13 PVIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRL-QPPLSQYSVQALRPGSRYEVSISA 87 (283)
T ss_dssp CSSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEE-CTTCSEEEECSCCTTCEEEEEEEE
T ss_pred cCCCCCcEEEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCCCcEEEEe-CCCCCEEEecCCCCCCEEEEEEEE
Confidence 46778887775 456679999999865 22468999986543 234433333 336788999999999999999999
Q ss_pred EcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccc
Q psy535 322 KNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400 (460)
Q Consensus 322 ~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~ 400 (460)
.|..|.+.. ....+.+ +|.+|.++.+...+ +++.|+|++|. +.+.+|.|+|+..+...
T Consensus 88 ~~~~g~s~~-~~~~~~t---~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~~-------------- 146 (283)
T 1tdq_A 88 VRGTNESDA-SSTQFTT---EIDAPKNLRVGSRTATSLDLEWDNSE---AEAQEYKVVYSTLAGEQ-------------- 146 (283)
T ss_dssp EETTEECCC-EEEEEEC---CCCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEETTCCC--------------
T ss_pred ECCCCCCCC-eeEEEEC---CCCCCCceEEEecCCCeEEEEecCCC---CCccEEEEEEEeCCCCc--------------
Confidence 999887642 3333333 47889999998776 69999999985 57999999999764300
Q ss_pred cccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452 (460)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s 452 (460)
.....+.........+.|.+|.|++.|.|+|.|.|..|.|+++
T Consensus 147 ---------~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~ 189 (283)
T 1tdq_A 147 ---------YHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA 189 (283)
T ss_dssp ---------CEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred ---------ceEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcce
Confidence 0001111000126789999999999999999999999988654
No 281
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.72 E-value=1.3e-17 Score=135.35 Aligned_cols=126 Identities=17% Similarity=0.132 Sum_probs=92.6
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK 93 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~ 93 (460)
+.|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+. . +.+.|+|
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~-~~~~w~k 133 (188)
T 1oll_A 57 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-T-SMFLLLK 133 (188)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-C-SEEEEEE
T ss_pred eEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-C-CEEEEEE
Confidence 58999999999999999999886542 225667888864 56666555 3567889999999998764 3 3799999
Q ss_pred CCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC-CCcceeeEEEEEee
Q psy535 94 DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH-GTQGSSGQMEVLVR 149 (460)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-g~~~~~~~~~v~v~ 149 (460)
+|..+.. .......++.|.|.+++.+|+|.|+|.|.|.. .....+..+.|.|.
T Consensus 134 ~g~~~~~---~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 134 EGRSSHV---QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp ESSSCEE---EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred CCccccc---cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 9977642 11122334579999999999999999998764 22334556666653
No 282
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.72 E-value=4.9e-18 Score=152.12 Aligned_cols=131 Identities=19% Similarity=0.243 Sum_probs=101.1
Q ss_pred EeeCCeEEEeecCCCCCe-eEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535 14 IKKDGTLVINPVGSDDSG-LYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWT 92 (460)
Q Consensus 14 ~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~ 92 (460)
...+++|.|.+++.+|+| .|+|.|.|..|.. +..+.|.|..+|.+ ......+|++++|.|.+.|.|.+ .|+|+
T Consensus 208 ~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~-~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p-~i~W~ 281 (347)
T 2ifg_A 208 GLPSLGLTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAP-SLRWL 281 (347)
T ss_dssp CSSEEEEEEESCCSTTTTCCEEECCEETTEEC-CEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCC-EEEEE
T ss_pred ecccceEEEeeCChHHCCCeEEEEEEcCCCCE-EEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCC-cEEEE
Confidence 334468999999999999 9999999998875 66778888777775 12234568899999999999876 89999
Q ss_pred eCCeecCccccccEEEe--------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535 93 KDKRLLEPYQTKDIVVM--------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 93 ~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
++|..+........... .+++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 282 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~--~~~~~l~V~~~P 347 (347)
T 2ifg_A 282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA--SASIMAAFMDNP 347 (347)
T ss_dssp ETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEE--EEEEEECSCCCC
T ss_pred eCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCce--eeEEEEEecCCC
Confidence 99998874322222211 24569999999999999999999999875 455666666554
No 283
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.72 E-value=5.8e-17 Score=128.74 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=100.9
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcc----------ccccEEEe-ecCeEEEeecCCCCCeEEEEEEEc
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY----------QTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~----------~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
...+.+|++++|.|.+.+ |. +.|.|++++..+... ...+.... .+++|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n 81 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PL-KEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CC-SCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred EEEEEcCCCEEEcCCCCC-Cc-ceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence 455778999999999843 44 479999988654211 12244432 567899999999999999999988
Q ss_pred CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEcc
Q psy535 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEG 213 (460)
Q Consensus 134 ~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~ 213 (460)
..| ...+.|.|..++.. |.. .... ....|.|.+ .+.|.|.+.|+++ +..+.. .....+.+.
T Consensus 82 ~~~----~~~~~L~V~~~~~~---p~i--~~~~-~~~~L~C~~---~~~p~p~i~W~~~-~~~l~~----~~~~~l~~~- 142 (171)
T 1ccz_A 82 ITD----TMKFFLYVLEMVSK---PMI--YWEC-SNATLTCEV---LEGTDVELKLYQG-KEHLRS----LRQKTMSYQ- 142 (171)
T ss_dssp CCS----CEEEEEEEECCCCC---CEE--EEET-TTTEEEEEC---SSCSSCEEEEEET-TEEEEE----ESSSEEEEE-
T ss_pred CCC----cEEEEEEEECcCCC---CEE--EEec-CCcEEEEEe---CCCCCcEEEEEEC-CEECcC----CcceEEEEe-
Confidence 776 34555666555321 110 0101 113799998 6778899999984 433321 111233333
Q ss_pred ccceeceEEEEEEecccceeeeeeEE
Q psy535 214 LRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 214 ~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
...|.|.|+|.|.|..+.......+
T Consensus 143 -~~~~~g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 143 -WTNLRAPFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp -CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred -ccCCCceEEEEEEcccCcccceeEE
Confidence 3667889999999999887665443
No 284
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.72 E-value=9.5e-17 Score=136.09 Aligned_cols=136 Identities=22% Similarity=0.297 Sum_probs=98.8
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC----Cee-EEcceeeeecceeeEEEEEEEecCCCCCeEEE
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP----AKV-TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTW 91 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W 91 (460)
+++|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|... |.+ ...+....+.+|+.+.|.|.+.+.|.+ .+.|
T Consensus 71 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p-~v~W 148 (241)
T 3grw_A 71 QWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQW 148 (241)
T ss_dssp GTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC-EEEE
T ss_pred ceEEEEEeCCcccCEEEEEEEeecCCce-EEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC-EEEE
Confidence 3589999999999999999999987764 66778888652 222 224566778889999999999998876 8999
Q ss_pred ee----CCeecCccccccEEEe---------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceee
Q psy535 92 TK----DKRLLEPYQTKDIVVM---------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTI 156 (460)
Q Consensus 92 ~~----~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~ 156 (460)
++ ++..+........... ..+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|....
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~~~~ 224 (241)
T 3grw_A 149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA--EKAFWLSVHGPRAAEE 224 (241)
T ss_dssp EEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEC--------
T ss_pred EEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE--EEEEEEEecCCCCCCc
Confidence 99 8877754333222211 23469999999999999999999988876 4556677777775443
No 285
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.72 E-value=1.6e-17 Score=137.96 Aligned_cols=130 Identities=22% Similarity=0.284 Sum_probs=95.6
Q ss_pred cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEec
Q psy535 9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
.+|+.+..++ +|.|.+++.+|+|.|+|.|.+..+......+.|.|.. +|.+...+......+|+.++|.|.+.+
T Consensus 59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g 138 (213)
T 3d9a_L 59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN 138 (213)
T ss_dssp CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred cccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEee
Confidence 4788887654 8999999999999999999998765434456777764 666666444444457889999999988
Q ss_pred -CCCCCeEEEeeCCeecCccccc--cE------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 83 -NPTFQYVTWTKDKRLLEPYQTK--DI------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 83 -~~~~~~v~W~~~~~~~~~~~~~--~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
.|++..++|+++|..+...... .. .....+.|.|.++..+|+|.|+|.|.|.....
T Consensus 139 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 139 FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp EBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred ecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 4443479999999987643000 00 00112379999999999999999999976554
No 286
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.72 E-value=8e-17 Score=134.58 Aligned_cols=169 Identities=14% Similarity=0.236 Sum_probs=110.0
Q ss_pred ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC-----------------ccccccEEEeec-----CeEEEe
Q psy535 63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE-----------------PYQTKDIVVMQN-----GSLLFT 117 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~-----~~l~i~ 117 (460)
|....+.+|++++|.|.+.+.+ ....+.|+|+. .... +....++....+ .+|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 4455688899999999998764 23479999842 2110 001245555432 379999
Q ss_pred ecCCCCCeEEEEEEEcCCC-----CcceeeEEEEEee--CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeE
Q psy535 118 RVNQNHQGRYTCTPYNAHG-----TQGSSGQMEVLVR--KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TIT 188 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g-----~~~~~~~~~v~v~--~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~ 188 (460)
+++.+|+|.|+|.+.+..+ .......+.|.+. .+|.+...+... .+..|+.++|.|.+ .| .|.| .+.
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~ 162 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLV---KGYFPEPVTVT 162 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCS-CCCCSSEEEEEEEE---EEEBSSCCEEE
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccc-cccCCCcEEEEEEE---ccEECCCCEEE
Confidence 9999999999999998654 1112233444321 245554433222 35679999999999 45 4888 999
Q ss_pred EEcCCCccCCcccE--------EEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535 189 WQRRDGVALPKNRV--------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237 (460)
Q Consensus 189 W~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~ 237 (460)
|++++ ..+..... ....+.|.|..+...| |.|+|.|.|..|......
T Consensus 163 W~~~g-~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~ 217 (222)
T 1q9r_B 163 WNSGS-LSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 217 (222)
T ss_dssp EGGGT-BCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EecCC-eEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence 99854 33321111 1112357888888888 999999999988755443
No 287
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.72 E-value=4.7e-16 Score=132.95 Aligned_cols=171 Identities=13% Similarity=0.201 Sum_probs=113.7
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eec---------------CccccccEEEeecC-----
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLL---------------EPYQTKDIVVMQNG----- 112 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~---------------~~~~~~~~~~~~~~----- 112 (460)
++.+...+....+.+|++++|.|.+.+.. +.+.+.|+|.. ..+ ......++.+..+.
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA 85 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence 44566677888899999999999998842 23479999732 111 01112355544322
Q ss_pred eEEEeecCCCCCeEEEEEEEcCC----------CCcceeeEEEEEeeC---------------CCceeeCCCcccccCCC
Q psy535 113 SLLFTRVNQNHQGRYTCTPYNAH----------GTQGSSGQMEVLVRK---------------PPAFTIKPEAMYQRKVG 167 (460)
Q Consensus 113 ~l~i~~~~~~d~G~y~C~~~~~~----------g~~~~~~~~~v~v~~---------------~p~~~~~~~~~~~~~~g 167 (460)
+|.|.+++.+|+|.|+|.+.+.. ..........|.|.. ++.+...+... .+..|
T Consensus 86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G 164 (256)
T 3juy_B 86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTL-SLSPG 164 (256)
T ss_dssp EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEE-EECTT
T ss_pred EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeE-EEeCC
Confidence 59999999999999999998861 111122234455554 34455555554 68899
Q ss_pred CeEEEEeeeeccCCCCC-CeeEEEcCC--CccC------------CcccEEEe----cceEEEccccceeceEEEEEEec
Q psy535 168 ESVDMHCEAQEAEGTQK-PTITWQRRD--GVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 168 ~~~~l~C~~~~~~~~p~-~~~~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n 228 (460)
+.++|.|.+ .+.+. +.+.|++.. ..+. ...++... ..+|.|.++..+|+|.|.|.+.|
T Consensus 165 ~~v~L~C~~---~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 241 (256)
T 3juy_B 165 ERATFSCRS---SHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYG 241 (256)
T ss_dssp SCEEEEEEE---SSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECC
T ss_pred CCEEEEEEE---CCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEee
Confidence 999999999 56665 899998732 1111 11233322 22599999999999999999988
Q ss_pred cc
Q psy535 229 EV 230 (460)
Q Consensus 229 ~~ 230 (460)
..
T Consensus 242 ~~ 243 (256)
T 3juy_B 242 AS 243 (256)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 288
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.72 E-value=1.1e-17 Score=137.94 Aligned_cols=165 Identities=14% Similarity=0.172 Sum_probs=107.8
Q ss_pred cceeee-ecceeeEEEEEEEecCC---CCCeEEEeeCCeecCcccc------ccEEEeecCeEEEeecCCCCCeEEEEEE
Q psy535 62 TPTVQY-LPFRLQGVVQCHIKANP---TFQYVTWTKDKRLLEPYQT------KDIVVMQNGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 62 ~~~~~~-~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 131 (460)
.|.... +.+|++++|.|.+.+.+ ....|.|+|++..+..... ..-.....+.|.|.+++.+|+|.|+|.|
T Consensus 8 ~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 87 (207)
T 2vol_A 8 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRV 87 (207)
T ss_dssp CCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred CcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEE
Confidence 344333 77899999999999874 3348999999977642110 0001112346999999999999999999
Q ss_pred EcCCCCcceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCccc---EE-
Q psy535 132 YNAHGTQGSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNR---VK- 203 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~---~~- 203 (460)
.|..+.......+.+ .+..+|.+.+.+... ....|+.++|.|.+ .| .|. +.+.|++++. .+.... ..
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~-~~~~g~~~~L~C~~---~g~~P~~~~v~W~k~g~-~l~~~~~~~~~~ 162 (207)
T 2vol_A 88 NSAAFPAPIEKTISKTKGRPKAPQVYTLPPPK-EQMAKDKVSLTCMI---TDFFPEDITVEWESNGQ-PAENYKNTQPIM 162 (207)
T ss_dssp ECTTCSSCEEEEECCCCCCCBCCEEEEECCCT-GGGSSSEEEEEEEE---EEEBSSCCEEEEEETTE-ECSCEEECCCEE
T ss_pred EccCCCCceEEEeccCCCCCcCCeEEEeCCCH-HHhcCCceEEEEEE---eeEECCCCEEEEEECCE-eccCcccCCceE
Confidence 998776433344433 456688877665544 23358999999999 45 454 4899999544 443211 11
Q ss_pred Eecce------EEEccccceeceEEEEEEecccc
Q psy535 204 IVGGN------ITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 204 ~~~~~------l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
..+++ |.+......+.|.|+|.|.|...
T Consensus 163 ~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 163 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp CTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred CCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 11222 34444444568999999999754
No 289
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.72 E-value=1.6e-16 Score=135.14 Aligned_cols=166 Identities=19% Similarity=0.265 Sum_probs=109.7
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCC----CCeEEEeeCC--eecC----------ccccccEEEeec---CeEEEeec
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPT----FQYVTWTKDK--RLLE----------PYQTKDIVVMQN---GSLLFTRV 119 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~--~~~~----------~~~~~~~~~~~~---~~l~i~~~ 119 (460)
+...|....+.+|++++|.|.+.+.+. .+.+.|+|+. ..+. .....++..... .+|.|.++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 83 (247)
T 1svz_A 4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV 83 (247)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence 455677788999999999999988762 3479999842 2110 001234443322 26999999
Q ss_pred CCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC-------------ceeeCCCcccccCCCCeEEEEeeeeccCCCC--C
Q psy535 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP-------------AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--K 184 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p-------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~ 184 (460)
+.+|+|.|+|.+.|..+.. ......|.|..++ .....+... .+..|+.++|.|.+ .+.+ .
T Consensus 84 ~~~D~G~Y~C~~~n~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~~~~~~~ 158 (247)
T 1svz_A 84 EAEDLGIYYCFQGSHFPPT-FGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPE-LKKPGETVKISCKA---TNYAFTD 158 (247)
T ss_dssp CGGGCEEEEEEECSSSSCE-ECCCEEEEEC---------------CCEEEECCCE-EECTTCCEEEEEEE---ESSCGGG
T ss_pred CHHHCEEEEEEEccCCccE-ECCCEEEEEECCccccccccccccCceEEeCCCce-eecCCCcEEEEEEE---cCcccCC
Confidence 9999999999998875432 1222345554432 222233333 58899999999998 4553 5
Q ss_pred CeeEEEcCCC-ccC------------------CcccEEEe------cceEEEccccceeceEEEEEEecc
Q psy535 185 PTITWQRRDG-VAL------------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 185 ~~~~W~~~~~-~~~------------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
+.+.|++++. ... ...++... ...|.|.++..+|+|.|.|.+.|.
T Consensus 159 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 159 YSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp SCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred cEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 6999998531 110 02344432 137999999999999999999985
No 290
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=99.72 E-value=1.1e-16 Score=139.78 Aligned_cols=181 Identities=12% Similarity=0.116 Sum_probs=124.0
Q ss_pred CCCCCCceeeee------ecceEEEEeecC--CCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEE
Q psy535 245 QPHAPYNITGVA------TEFSVTLEWLPG--YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316 (460)
Q Consensus 245 ~p~~p~~~~~~~------~~~~~~l~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 316 (460)
+|..|.++.... ...++.|.|.++ ...+.. +.+|.+.++..+.... .... ....+.+|.+++.|.
T Consensus 3 ~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~-i~~Y~V~~~~~~~~~~-~~~~-----~~~~~~~l~p~t~Y~ 75 (290)
T 3l5i_A 3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGK-ILDYEVTLTRWKSHLQ-NYTV-----NATKLTVNLTNDRYL 75 (290)
T ss_dssp CCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSC-EEEEEEEEEETTSCCE-EEEE-----SSSEEEEEECSSCEE
T ss_pred CCCCCCceeEEecccccCCCceEEEEEccCCchhcCCc-eEeEEEEEEeCCcCce-eEec-----CCcEEEEEcCCceEE
Confidence 455555554332 247999999973 233444 4799999987654332 1111 223567789999999
Q ss_pred EEEEEEcCCCCCCCCCcEEEEcc-CCCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCC
Q psy535 317 FQVVGKNELGDGMLSNIVVVKTK-GPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRP 395 (460)
Q Consensus 317 ~~~~a~n~~G~~~~s~~~~~~~~-~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~ 395 (460)
|+|.|.|..|.+..+. +.+... ..+|.+|.++.+....+++.|+|++|.. .+.+|.|+|+..+.-.
T Consensus 76 ~~V~A~n~~G~s~~s~-~~~~~~~~~~~~p~~~~~~~~~~~si~l~W~~p~~---~i~~Y~v~~~~~~~~~--------- 142 (290)
T 3l5i_A 76 ATLTVRNLVGKSDAAV-LTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE---SVKKYILEWCVLSDKA--------- 142 (290)
T ss_dssp EEEEEEESSCBCCCEE-EEECCTTCCCCCCCEEEEEEEETTEEEEEEECCSS---CCCEEEEEEEEECSSS---------
T ss_pred EEEEEEcCCCCCCCce-EEeecccccCCCccceeEEEeCCCeEEEEEeCCCC---CCCcEEEEEEECCCCC---------
Confidence 9999999999886552 222222 1346778888888777899999999854 7999999999765310
Q ss_pred CcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
.....|..+. ......+.+.+|.|++.|.|+|.|.|..|.|++ ..+.+.|
T Consensus 143 -----------~~~~~~~~~~--~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~-~~~~~~t 192 (290)
T 3l5i_A 143 -----------PCITDWQQED--GTVHRTYLRGNLAESKCYLITVTPVYADGPGSP-ESIKAYL 192 (290)
T ss_dssp -----------CCCCEEEEEE--TTCSEEECCSCCCTTCEEEEEEEEEETTEECCC-EEEEEES
T ss_pred -----------CCCcCeEEcc--CCCcceEEecCcCCccEEEEEEEEEeCCccccc-EEEEeEc
Confidence 0112344442 245667888999999999999999999999874 4444444
No 291
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.72 E-value=8e-17 Score=137.38 Aligned_cols=171 Identities=14% Similarity=0.225 Sum_probs=112.6
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCC----CCeEEEeeCCe--ec----------CccccccEEEeecC---eEEEe
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPT----FQYVTWTKDKR--LL----------EPYQTKDIVVMQNG---SLLFT 117 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~~--~~----------~~~~~~~~~~~~~~---~l~i~ 117 (460)
+.+...|....+.+|++++|.|.+.+.++ .+.|.|+|++. .+ ......++.....+ +|.|.
T Consensus 35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 114 (252)
T 3bkj_L 35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS 114 (252)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence 34556677788999999999999988761 34799999541 11 01112344444333 79999
Q ss_pred ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCC
Q psy535 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRD 193 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~ 193 (460)
+++.+|+|.|+|.+.+..+.. ......|.|.. +|.+.+.+... .+..|+.++|.|.+. ...|.+ .+.|++++
T Consensus 115 ~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~--g~~p~~~~v~W~k~g 190 (252)
T 3bkj_L 115 RVEAEDLGVYYCFQASLVPLT-FGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLN--NFYPKDINVKWKIDG 190 (252)
T ss_dssp SCCGGGCEEEEEEECSBSSCE-ECCCEEEEECCCCBCCEEEEECCCH-HHHHHTEEEEEEEEE--EEBSSCCEEEEEETT
T ss_pred CCCcccCEEEEEEEEcCCccE-ECCCEEEEEeCCCcCcEEEEeCCCh-hhcCCCcEEEEEEEe--eEeCCCcEEEEEECC
Confidence 999999999999998865432 11223344442 56666544333 234688999999983 224544 79999954
Q ss_pred CccCCcc-cEE-----------EecceEEEccccceeceEEEEEEecccce
Q psy535 194 GVALPKN-RVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 194 ~~~~~~~-~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
. .+... ... .....|.|..+...|.|.|+|.|.|....
T Consensus 191 ~-~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 191 S-ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp E-EECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred e-ecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 4 33222 110 01234889999999999999999997554
No 292
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.72 E-value=5.9e-18 Score=140.45 Aligned_cols=165 Identities=12% Similarity=0.211 Sum_probs=109.1
Q ss_pred ceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEeec---CeEEEeecCCCCCeEE
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVMQN---GSLLFTRVNQNHQGRY 127 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~G~y 127 (460)
|....+.+|++++|.|.+.+.+.+ .+.|+|+ +..+. .....++..... ..|.|.+++.+|+|.|
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 84 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY 84 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCC-eEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEE
Confidence 667788899999999998877655 6999984 33221 001234443322 2799999999999999
Q ss_pred EEEEEcCCC-CcceeeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCCccCCcc
Q psy535 128 TCTPYNAHG-TQGSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDGVALPKN 200 (460)
Q Consensus 128 ~C~~~~~~g-~~~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~~~~~~~ 200 (460)
+|.+.|..+ .........|.| ..+|.+...+... .+..|+.++|.|.+ .+. |. +.+.|++++..+....
T Consensus 85 ~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~---~g~~p~~~~v~W~k~g~~~~~~~ 160 (212)
T 1nfd_E 85 YCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSP-EELRTNKATLVCLV---NDFYPGSATVTWKANGATINDGV 160 (212)
T ss_dssp EEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCH-HHHHTTEECCCEEE---EEEBSSCCEEEEEETTEEECSSC
T ss_pred EEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCch-HhccCCceEEEEEE---EeeECCccEEEEEECCeEcCCCe
Confidence 999996322 111122233444 2466666544433 34578999999998 454 54 7999999543322111
Q ss_pred cE---------EEecceEEEccccceeceEEEEEEecccce
Q psy535 201 RV---------KIVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 201 ~~---------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
.. ....+.|.|.++...|.|.|+|.|.|..+.
T Consensus 161 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 161 KTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp BCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred ecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 10 111245889999999999999999998765
No 293
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.72 E-value=9e-18 Score=120.02 Aligned_cols=93 Identities=23% Similarity=0.385 Sum_probs=77.5
Q ss_pred CCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420 (460)
Q Consensus 342 ~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (460)
+|.+|.++.+....+++.|+|++|.+++++|++|.|+|+..+. |..... ....
T Consensus 7 p~~pP~~l~v~~~~~sv~L~W~pP~~~~~~I~gY~vey~~~~~~W~~~~~--------------------------~~~~ 60 (108)
T 1v5j_A 7 GLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDP--------------------------AVAG 60 (108)
T ss_dssp CCCCCEEEEEEECSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEEEEE--------------------------EECS
T ss_pred CCCCCcceEEEEeCCEEEEEECCCCCCCCCCcEEEEEEEeCCCCcEEeee--------------------------ecCC
Confidence 4789999999776679999999999888899999999997322 432221 1235
Q ss_pred CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
..+.|.+.+|.+++.|+|||.|+|..|.|++|+.+.++|.
T Consensus 61 ~~t~~~v~~L~pg~~Y~FRV~A~n~~G~s~pS~~~~v~T~ 100 (108)
T 1v5j_A 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS 100 (108)
T ss_dssp SCCEEECCCCCTTSCEECCBEEEETTEEEEECSCCCCCCS
T ss_pred CcCEEEeCCCCCCCEEEEEEEEEcCCCCcCCCCCEEEEeC
Confidence 6789999999999999999999999999999999998884
No 294
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.72 E-value=5.8e-17 Score=131.11 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=94.9
Q ss_pred ccceEEEee----CC--eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535 8 LETRVVIKK----DG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 8 ~~~r~~~~~----~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
..+|+.+.. +| +|.|.+++.+|+|.|+|.+.+..+ .+.|.|.. +.. +....+.+|++++|.|.+.
T Consensus 52 ~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~-----~~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~ 122 (184)
T 2ny1_B 52 LNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE-----EVQLLVFG---LTA-NSDTHLLQGQSLTLTLESP 122 (184)
T ss_dssp TGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEEE-----EEEEEEEE---EEE-SSCSEEETTCCEEEEEECC
T ss_pred hCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEcCCC-----cEEEEEEE---ecC-CCCceeecCCCEEEEEEcC
Confidence 356677653 23 699999999999999999998643 45666653 222 3345678899999999998
Q ss_pred cCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535 82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153 (460)
Q Consensus 82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~ 153 (460)
+.|.+ .+.|++++..+ ....+.|.|.++..+|+|.|+|.|.|..+.. +..+.|.|...|.
T Consensus 123 ~~p~~-~v~W~~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~--~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 123 PGSSP-SVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV--EFKIDIVVLAFQK 182 (184)
T ss_dssp TTCCC-EEEEECTTSCE---------EEESSEEEESSCCGGGCEEEEEEEEETTEEE--EEEEEEEEECCCC
T ss_pred CCCCC-EEEEEeCCCcc---------ccCceEEEEecCCcCCCeEEEEEEEECCceE--EEEEEEEEEecCC
Confidence 88755 89999988665 2356789999999999999999999877664 4455666665553
No 295
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.71 E-value=3.4e-17 Score=136.92 Aligned_cols=143 Identities=22% Similarity=0.269 Sum_probs=95.8
Q ss_pred cccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC---CeeEEcceeeeecceeeEEEE
Q psy535 7 SLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP---AKVTFTPTVQYLPFRLQGVVQ 77 (460)
Q Consensus 7 ~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~ 77 (460)
...+|+.+.. +++|.|.+++.+|+|.|+|.+.+.... +..+.|.|..+ |.+...+. ..+.+|+.++|.
T Consensus 55 ~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~~~l~ 131 (222)
T 4i0k_A 55 AYSNRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFD--SAAVSLQVAAPYSKPSMTLEPN-KDLRPGNMVTIT 131 (222)
T ss_dssp SSCSCEECCTTTGGGTBCCEEECSCCGGGCSCEEEEEEECCCC--CCCCCCCCCBCCCCCEEECCC------CCSEEEEE
T ss_pred ceeCcEEEecccccCCeEEEEECCcccccCEEEEEEEEeCCCc--eEEEEEEEEcCCCCCcEEeCCC-ceecCCceEEEE
Confidence 3467888765 568999999999999999999986322 55667777654 45554443 456789999999
Q ss_pred EEE-ecCCCCCeEEEee-CCeecCccccccEEEeecCe---EEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535 78 CHI-KANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 78 C~~-~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
|.+ .+.|.+ .+.|++ ++..+............++. |.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus 132 C~~~~g~P~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~p 208 (222)
T 4i0k_A 132 CSSYQGYPEA-EVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQD--AHGSVTITGQP 208 (222)
T ss_dssp EEEEEEBSCC-EEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEE--EEEEEECCC--
T ss_pred EecccccCCC-eEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCc--eEEEEEEeCCc
Confidence 999 676665 899999 45544321111112222333 78999999999999999999998754 45556666666
Q ss_pred cee
Q psy535 153 AFT 155 (460)
Q Consensus 153 ~~~ 155 (460)
...
T Consensus 209 ~~~ 211 (222)
T 4i0k_A 209 LTF 211 (222)
T ss_dssp ---
T ss_pred ccc
Confidence 433
No 296
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.71 E-value=9.1e-17 Score=132.98 Aligned_cols=168 Identities=15% Similarity=0.270 Sum_probs=108.7
Q ss_pred cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC--------------ccccccEEEeec-----CeEEEeec
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE--------------PYQTKDIVVMQN-----GSLLFTRV 119 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~-----~~l~i~~~ 119 (460)
.|....+.+|++++|.|.+.+.+. .+.+.|+|++ .... +....++.+..+ .+|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 85 (210)
T 3d9a_H 6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV 85 (210)
T ss_dssp EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence 355567889999999999988652 3479999852 2210 011245554432 27999999
Q ss_pred CCCCCeEEEEEEEcCCCCcceeeEEEEEe--eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEEEcCCCc
Q psy535 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLV--RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITWQRRDGV 195 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g~~~~~~~~~v~v--~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~ 195 (460)
+.+|+|.|+|.+.+.. .......+.|.. ..+|.+...+... .+..|+.++|.|.+ .+. |.| .+.|++++..
T Consensus 86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W~~~~~~ 160 (210)
T 3d9a_H 86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLV---KGYFPEPVTVTWNSGSLS 160 (210)
T ss_dssp CGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTT-SCCCSSEEEEEEEE---EEEBSSCCEEEEGGGTBC
T ss_pred CcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCc-ccccCCcEEEEEEE---eeEecCCcEEEEeeCCcc
Confidence 9999999999998853 111222333321 1245555444333 46789999999999 454 777 9999985542
Q ss_pred cC--CcccE-----EEecceEEEccccceeceEEEEEEecccceeee
Q psy535 196 AL--PKNRV-----KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 196 ~~--~~~~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 235 (460)
.. ..... ....+.|.|......+ |.|+|.|.|..|....
T Consensus 161 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~ 206 (210)
T 3d9a_H 161 SGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV 206 (210)
T ss_dssp TTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred cceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence 11 01111 1123458888887766 9999999999887543
No 297
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=99.71 E-value=5.6e-17 Score=162.24 Aligned_cols=129 Identities=21% Similarity=0.436 Sum_probs=104.4
Q ss_pred eeecceEEEEeecCCCCCCCceeeEEEEEEec--------------CCCCeeeeeccCC---------CCceEEEccCcc
Q psy535 255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ--------------GNKDWLPIPVTPP---------GSTQITINRLTP 311 (460)
Q Consensus 255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~i~~l~~ 311 (460)
.....++.|+|.++...+..++.+|.+.|+.. +...|........ ....+.+.+|.|
T Consensus 479 ~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~L~P 558 (897)
T 2dtg_E 479 RTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKP 558 (897)
T ss_dssp EECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEECSCCS
T ss_pred EEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccceEeCCCCC
Confidence 45677999999988755554568999988765 1235654332211 247799999999
Q ss_pred CccEEEEEEE-EcCCCC----CCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcC
Q psy535 312 ATTYEFQVVG-KNELGD----GMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDG 383 (460)
Q Consensus 312 ~~~~~~~~~a-~n~~G~----~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~ 383 (460)
++.|.|++.| .|..|. +..|..+.+++...+|.+|.++.+...+ ++|.|+|++|...++.+.+|.|+|+..+
T Consensus 559 ~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~I~~Y~V~~~~~~ 636 (897)
T 2dtg_E 559 WTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQA 636 (897)
T ss_dssp SCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEEC
T ss_pred CcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCCCeeEEEEEEEECC
Confidence 9999999999 999997 6788889999998889999999998887 6999999999877889999999998743
No 298
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.9e-17 Score=120.79 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=88.4
Q ss_pred CCCCCCCcEEEEccCCCCC-CCcceEEE-eec-ceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCcccc
Q psy535 326 GDGMLSNIVVVKTKGPKPG-PPRNVSVT-EVN-NGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~-~~~-~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~ 400 (460)
|.+.+|..+.+.+.+.+|. +|.++++. ..+ ++|.|+|++| ...++.|.+|+|+|+..+..
T Consensus 1 G~g~~S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~--------------- 65 (124)
T 2dbj_A 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAG--------------- 65 (124)
T ss_dssp CCSCCCCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETT---------------
T ss_pred CcCCCCCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCC---------------
Confidence 6678888999998888886 89999998 464 6999999999 55688999999999743210
Q ss_pred cccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
....|... .....+.+.|.+|.|++.|.|+|+|+|..|.|++|+++.++|+
T Consensus 66 -------~~~~~~~~--~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T~ 116 (124)
T 2dbj_A 66 -------ISKELLEE--VGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP 116 (124)
T ss_dssp -------EEEEEEEE--EESTTSCEEEECCCSSSEEEECEEEEESSCBCCCCCCEEEECC
T ss_pred -------CccceEEE--eCCCcceEEecCCCCCCEEEEEEEEECCCccCCCCCCEEEEcC
Confidence 01223221 1245678999999999999999999999999999999999885
No 299
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=139.12 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=120.1
Q ss_pred CCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeecc-CCCCceEEEc--cCccCccEEEEEEEE
Q psy535 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-PPGSTQITIN--RLTPATTYEFQVVGK 322 (460)
Q Consensus 246 p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~--~l~~~~~~~~~~~a~ 322 (460)
..+|.++........+.|+|.|+..+..+. .|.+.|+..+...|...... ......+.+. .|.+...|.++|.|.
T Consensus 4 l~~P~nv~~~~~n~~~iL~W~pp~~~~~~v--~Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~A~ 81 (306)
T 3s98_A 4 LKSPQKVEVDIIDDNFILRWNRSDESVGNV--TFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAE 81 (306)
T ss_dssp ----CCCEEEEETTEEEEECC--------C--EEEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEEEE
T ss_pred CCCCcEeEEEEECCeEEEEEcCCCCCCCCe--EEEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEEEEE
Confidence 346778877777888999999887655443 49999998777788765321 1233445554 467999999999999
Q ss_pred cCCCCCCCCCcEEEEccC-CCCCCCcceEEEeecceEEEEecCCCCC------CccceEEEEEEEEcCCeeeeccccCCC
Q psy535 323 NELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEVNNGFVISWQPPLER------ASLIQYYLIKYRTDGSWKTLNKGQIRP 395 (460)
Q Consensus 323 n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~~~v~l~W~~~~~~------~~~i~~y~i~~~~~~~~~~~~~~~~~~ 395 (460)
| .|.+.++....+.+.. ..++||. +.+....++|.|+|+|+... .+.+.+|+|.|+..++-.
T Consensus 82 n-~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~~~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~--------- 150 (306)
T 3s98_A 82 K-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGV--------- 150 (306)
T ss_dssp C-SSCEEEEECCCBCHHHHCBCCCCE-EEEEECSSCEEEEEECC---CCCC-----CCEEEEEEEETTTCC---------
T ss_pred e-CCcCCCEeeeeEechhhCccCCCe-EEEEEcCCEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCC---------
Confidence 9 7766655444444333 2356665 77776667999999966442 367999999999865400
Q ss_pred CcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEee--cCCCCCCCceeEeec
Q psy535 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN--ELGDGMLSNIVVVKT 459 (460)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n--~~G~s~~s~~~~~~T 459 (460)
.|... .....+.|.+|.|++.|.|+|+|+| ..|.|++|+.+.++|
T Consensus 151 ---------------~~~~~----~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T 197 (306)
T 3s98_A 151 ---------------EERIE----NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKT 197 (306)
T ss_dssp ---------------CEEEE----EECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEEC
T ss_pred ---------------eEEEe----cccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEe
Confidence 11110 1346899999999999999999999 679999999988877
No 300
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=121.82 Aligned_cols=112 Identities=22% Similarity=0.356 Sum_probs=90.7
Q ss_pred CCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535 326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~ 401 (460)
|.|.+|..+.+++....|. +|.++++...+ +++.|+|++| ...++.+.+|.|+|+..+.-
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~---------------- 64 (134)
T 2edx_A 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE---------------- 64 (134)
T ss_dssp CCCCCCCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSS----------------
T ss_pred CCCCCcCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCC----------------
Confidence 6678888899998888886 89999998876 5999999999 56678999999999975430
Q ss_pred ccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...+..+.......+.+.|.+|.|++.|.|+|+|+|..|.|++|..+.++|.
T Consensus 65 -------~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 116 (134)
T 2edx_A 65 -------DRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTD 116 (134)
T ss_dssp -------CCCCEEECCCBTTCSEEEEESCCTTCEEEEEEEEEETTBCCCCCCCEEEECC
T ss_pred -------CcccEEEEeeCCCccEEEeCCCCCCCEEEEEEEEEcCCCcCCCCCCEEeecC
Confidence 0111222222356789999999999999999999999999999999998874
No 301
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.71 E-value=7.3e-17 Score=137.74 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=97.7
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC----cceeeeEEEEecCCeeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE----PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
.++|+.+..+ ++|.|.+++.+|+|.|+|.+.+..|. .....+.|.|..++.+...|....+.+|++++|.|
T Consensus 64 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C 143 (256)
T 1nqb_A 64 FKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISC 143 (256)
T ss_dssp GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEE
T ss_pred cCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEe
Confidence 3579998764 38999999999999999999998652 12345688888778777778888899999999999
Q ss_pred EEecCCCC----CeEEEee--CCeecCc----------cccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 79 HIKANPTF----QYVTWTK--DKRLLEP----------YQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 79 ~~~~~~~~----~~v~W~~--~~~~~~~----------~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
.+.+.+.+ +.+.|+| ++..+.. ....++.... ..+|.|.+++.+|+|.|+|.|.+..
T Consensus 144 ~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 219 (256)
T 1nqb_A 144 RSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV 219 (256)
T ss_dssp EESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred EecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence 99988754 3799999 5554310 0123333322 2369999999999999999998753
No 302
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Probab=99.71 E-value=2e-16 Score=144.99 Aligned_cols=223 Identities=17% Similarity=0.166 Sum_probs=91.6
Q ss_pred EecceEEEccccceeceEEEEEEecc--cceeeeeeE--EEEe-cCCCCCCCceeeeeecceEEEEeecCCCCCCCceee
Q psy535 204 IVGGNITIEGLRRVDFGYYECVVSNE--VATIVQAAQ--LVVE-GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQN 278 (460)
Q Consensus 204 ~~~~~l~i~~~~~~~~g~y~C~a~n~--~g~~~~~~~--l~v~-~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~ 278 (460)
.....+.|.++.+...+.++..|.|. .|....+.. +... ..++.+|.++........+.|.|.++. . ..+
T Consensus 160 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~~~~~l~W~pp~----~-~~~ 234 (414)
T 3se4_A 160 NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTY----A-NMT 234 (414)
T ss_dssp EECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEETTEEEEEEECSS----S-SCE
T ss_pred cCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEecCCeEEEECCCC----C-CeE
Confidence 34557889999998888888889883 344333322 2222 234566777776555678999999852 2 248
Q ss_pred EEEEEEec--------CCCCeeeeecc-CCCCceEEEc-cCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCC-CCCCc
Q psy535 279 YVIWYREQ--------GNKDWLPIPVT-PPGSTQITIN-RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPR 347 (460)
Q Consensus 279 ~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~i~-~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~-P~~p~ 347 (460)
|.+.|+.. +...|..+... ......+.+. +|.+...|.+++.|.|..|.|.++....+.+.... |+||.
T Consensus 235 Y~v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~~~~pP~ 314 (414)
T 3se4_A 235 FQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV 314 (414)
T ss_dssp EEEEEEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC-------
T ss_pred EEEEEEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhccccCCCe
Confidence 99999863 23456544221 1234566665 59999999999999999999999988888887764 57777
Q ss_pred ceEEEeecceEEEEecCCCCCC------ccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535 348 NVSVTEVNNGFVISWQPPLERA------SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421 (460)
Q Consensus 348 ~~~~~~~~~~v~l~W~~~~~~~------~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (460)
+.+....+++.|.|++|...+ +.+.+|+|.|+..+.-. .+. + ...
T Consensus 315 -l~~~~~~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~~------------------------~~~-~---~~~ 365 (414)
T 3se4_A 315 -FNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNA------------------------ERK-I---IEK 365 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -EEEEECCCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCCc------------------------eEE-E---Eec
Confidence 888765679999999987543 36788999887654300 000 0 124
Q ss_pred cceEEECCCCcCceEEEEEEEeec----CCCCCCCceeEeecC
Q psy535 422 STQITINRLTPATTYEFQVVGKNE----LGDGMLSNIVVVKTK 460 (460)
Q Consensus 422 ~~~~~i~~L~p~~~Y~~~v~a~n~----~G~s~~s~~~~~~T~ 460 (460)
.+.+.|.+|.|++.|.|+|+|.+. .|.|++|+++.++|.
T Consensus 366 ~~~~~l~~L~p~t~Y~~~V~A~~~~~~~~g~g~~S~~~~~~T~ 408 (414)
T 3se4_A 366 KTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTK 408 (414)
T ss_dssp -------------------------------------------
T ss_pred CCeEEeCCCCCCCeEEEEEEEEecccccCCCCCCCCCEeEEeC
Confidence 567899999999999999999993 599999999888773
No 303
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.71 E-value=1.2e-16 Score=134.56 Aligned_cols=132 Identities=19% Similarity=0.232 Sum_probs=99.7
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC----eeE-EcceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA----KVT-FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWT 92 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p----~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~ 92 (460)
++|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..++ .+. ..+....+.+|+.+.|.|.+.+.|.+ .+.|+
T Consensus 76 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~ 153 (231)
T 3ojm_B 76 WSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWI 153 (231)
T ss_dssp TEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC-EEEEE
T ss_pred ceEEEecCCcccCEEEEEEEecccCcc-cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC-EEEEE
Confidence 489999999999999999999988765 667788887532 222 13556778889999999999998876 89999
Q ss_pred e----CCeecCccccccEEEe--------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535 93 K----DKRLLEPYQTKDIVVM--------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153 (460)
Q Consensus 93 ~----~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~ 153 (460)
+ +|..+........... ..+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.
T Consensus 154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~ 224 (231)
T 3ojm_B 154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA--NQSAWLTVLPKQQ 224 (231)
T ss_dssp EECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEECCC-
T ss_pred ECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE--eeEEEEEEecCCC
Confidence 9 7777654332222221 22469999999999999999999998886 4455566665654
No 304
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.71 E-value=1.1e-16 Score=119.29 Aligned_cols=109 Identities=29% Similarity=0.425 Sum_probs=87.7
Q ss_pred CCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535 327 DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY 404 (460)
Q Consensus 327 ~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (460)
.+..+..+.+.+...+|.+|.++++.... +++.|+|++|. +.++.+.+|.|+|+..+.
T Consensus 2 ~sgss~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g~i~~Y~v~~~~~~~-------------------- 61 (120)
T 1x5f_A 2 SSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGI-------------------- 61 (120)
T ss_dssp CCCCCSSCCCCCCCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTC--------------------
T ss_pred CCCCCCCEEecCCCCCCCCCCCcEEEecCCCEEEEEECCCCCCCCCcEEEEEEEEEECCC--------------------
Confidence 34455566677777889999999998877 58999999998 777899999999997642
Q ss_pred eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
..|..........+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus 62 -----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 112 (120)
T 1x5f_A 62 -----ARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ 112 (120)
T ss_dssp -----CCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEECSSCEEEECCCEEEECC
T ss_pred -----CCceEEEeccCCccEEEeCCCCCCCEEEEEEEEECCCccCCCCCCEEEEeC
Confidence 012222223346789999999999999999999999999999999999884
No 305
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.71 E-value=4.6e-17 Score=135.45 Aligned_cols=131 Identities=16% Similarity=0.181 Sum_probs=92.4
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCC-CcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEE
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
..+|+.+..++ +|.|.+++.+|+|.|+|.|.+..+ ........|.|. .+|.+...+.......|+.++|.|.+
T Consensus 59 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~ 138 (216)
T 2xzc_L 59 IPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL 138 (216)
T ss_dssp CCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEE
T ss_pred CCCceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEE
Confidence 35788887544 899999999999999999999876 222334567775 45666554333223458899999999
Q ss_pred ecCC-CCCeEEEeeCCeecCccccc--cEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 81 KANP-TFQYVTWTKDKRLLEPYQTK--DIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 81 ~~~~-~~~~v~W~~~~~~~~~~~~~--~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
.+.+ ++..|+|+|+|..+...... ......+ +.|.|..+..+|+|.|+|.|.|.....
T Consensus 139 ~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 139 NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred EeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 9854 33489999999987542000 0000111 258999999999999999999976554
No 306
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.70 E-value=9.1e-17 Score=133.49 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=94.8
Q ss_pred cccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcc---eeeeEEEEecC---CeeEEcceeeeecceeeEE
Q psy535 7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQ---AAQAYLNVEFP---AKVTFTPTVQYLPFRLQGV 75 (460)
Q Consensus 7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~ 75 (460)
...+|+.+..+ ++|.|.+++.+|+|.|+|.+.+..+... ...+.|.|..+ |.+.. +. .+.+|+.++
T Consensus 66 ~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~ 142 (214)
T 2zg1_A 66 ETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTR 142 (214)
T ss_dssp TTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEE
T ss_pred cccCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEE
Confidence 34589998754 3899999999999999999998763221 24678888764 34332 22 266899999
Q ss_pred EEEEEecC---CCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 76 VQCHIKAN---PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 76 l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
|.|.+.+. .+++.++|++++..+.. .. ....+.|.|..+..+|+|.|+|.|.|..+....+..+.|.|
T Consensus 143 L~C~~~~~~~~~p~p~v~W~~~~~~~~~---~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 143 LSCSLPGSCEAGPPLTFSWTGNALSPLD---PE--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp EEEECTTCCSCSSCCEEEEESSTTSSSC---SS--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred EEEEeccCCCCCCCceEEEeCCCCccCC---CC--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 99999774 13348999999865431 11 13456899999999999999999999866655666666654
No 307
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.70 E-value=1.7e-17 Score=134.23 Aligned_cols=111 Identities=18% Similarity=0.275 Sum_probs=80.8
Q ss_pred CCeEEEee-cCCCCCeeEEEEEEeCCCCcceeeeEEEEec--CCee----------------E--Ecc-----eeeeecc
Q psy535 17 DGTLVINP-VGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--PAKV----------------T--FTP-----TVQYLPF 70 (460)
Q Consensus 17 ~~~L~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~----------------~--~~~-----~~~~~~~ 70 (460)
+++|.|.+ ++.+|+|.|+|.|.|..|.. +..+.+.|.. ++.. . ..+ ....+.+
T Consensus 43 ~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (186)
T 1jbj_A 43 DKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG 121 (186)
T ss_dssp CSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSS
T ss_pred CCEEEECCCCccccCEEEEEEEEeCCCcE-EEEEEEEEecccccccccccccccccCCccccccccccccccccceecCC
Confidence 45899999 99999999999999988763 4444444432 2210 0 000 0123448
Q ss_pred eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
|+++.|.|.+ |.+ .|+|+|+|..+..... ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 122 G~~v~l~C~~---p~p-~i~W~k~g~~i~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 122 DGSVLLTCGL---TDK-TIKWLKDGSIISPLNA------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp SCEEEEECSS---SCS-CEEEEETTEECCCSSC------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred CCeEEEEeeC---CCC-eEEEEECCEECcccCC------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 9999999998 444 7999999999863221 45679999999999999999999987654
No 308
>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.70 E-value=7.6e-17 Score=119.65 Aligned_cols=109 Identities=21% Similarity=0.398 Sum_probs=89.6
Q ss_pred CCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY 404 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (460)
|.+..|..+.+.+...+|.+|.++++...+ +++.|+|.+|.+.+++|.+|.|+|+..+.
T Consensus 1 G~s~~S~~~~~~t~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~-------------------- 60 (118)
T 1x3d_A 1 GSSGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKG-------------------- 60 (118)
T ss_dssp CCCCCCCCCCCCCCCSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTS--------------------
T ss_pred CCCCCCcCEEEEcCCCCCcCCCCcEEeccCCCEEEEEECCCCCCCCcceEEEEEEecCCC--------------------
Confidence 567788888888888889999999988776 69999999998778899999999986432
Q ss_pred eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
+..|..+.. ...+.++|.+|.|++.|.|||+|+|..|.|++|..+.++|.
T Consensus 61 ----~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~ 110 (118)
T 1x3d_A 61 ----NGEFCQCYM--GSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 110 (118)
T ss_dssp ----SSCCEEEEE--ESCSEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEEECS
T ss_pred ----CCCeEEeec--cCCcEEEeCCCCCCCEEEEEEEEEECCCCCCCccCEEEEcC
Confidence 012322211 23478999999999999999999999999999999998874
No 309
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.70 E-value=5.2e-17 Score=136.99 Aligned_cols=167 Identities=13% Similarity=0.220 Sum_probs=108.7
Q ss_pred ceeeeecceeeEEEEEEEecCCCCC-eEEEeeCC--eec----------CccccccEEEee---cCeEEEeecCCCCCeE
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPTFQ-YVTWTKDK--RLL----------EPYQTKDIVVMQ---NGSLLFTRVNQNHQGR 126 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~--~~~----------~~~~~~~~~~~~---~~~l~i~~~~~~d~G~ 126 (460)
|....+.+|++++|.|.+.+.+..+ .+.|+|++ ..+ ......++.... ..+|.|.+++.+|+|.
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 105 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD 105 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence 6677788999999999998865433 69999863 221 001123444332 2379999999999999
Q ss_pred EEEEEEcCCCCc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCCccCCc
Q psy535 127 YTCTPYNAHGTQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDGVALPK 199 (460)
Q Consensus 127 y~C~~~~~~g~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~~~~~~ 199 (460)
|+|.+.+..+.. .......|.|. .+|.+...+... ....|+.++|.|.+ .+. |. +.+.|++++ ..+..
T Consensus 106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~---~g~~p~~~~v~W~k~g-~~l~~ 180 (234)
T 2j6e_L 106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLI---SDFFPGAVTVAWKADG-APVKA 180 (234)
T ss_dssp EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCH-HHHTTSCCCEEECC---CBCSSCCCEEEEEETT-EECCS
T ss_pred EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCCh-hHhcCCceEEEEEE---EEEcCCceEEEEEECC-EECCC
Confidence 999999887621 11112233442 456655544333 23458899999998 453 44 489999944 44432
Q ss_pred ccEE-----------EecceEEEccccceeceEEEEEEecccceee
Q psy535 200 NRVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVATIV 234 (460)
Q Consensus 200 ~~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 234 (460)
.... .....|.|..+...|.|.|+|.|.|..+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 226 (234)
T 2j6e_L 181 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE 226 (234)
T ss_dssp SEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred CccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence 2110 0113578888888999999999999876543
No 310
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.70 E-value=1e-16 Score=136.81 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=100.8
Q ss_pred ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---------------CCeeEEcceeee
Q psy535 8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---------------PAKVTFTPTVQY 67 (460)
Q Consensus 8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~ 67 (460)
..+|+.+..++ +|.|.+++.+|+|.|+|.+.+..+........|.|.. ++.+...|....
T Consensus 65 ~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~ 144 (253)
T 3uzq_A 65 FQGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLA 144 (253)
T ss_dssp GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEE
T ss_pred CCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEE
Confidence 45788887654 4999999999999999999986655434567777774 456677788888
Q ss_pred ecceeeEEEEEEEecCCCC---CeEEEeeC--CeecC----------ccccccEEEeec---CeEEEeecCCCCCeEEEE
Q psy535 68 LPFRLQGVVQCHIKANPTF---QYVTWTKD--KRLLE----------PYQTKDIVVMQN---GSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 68 ~~~g~~~~l~C~~~~~~~~---~~v~W~~~--~~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C 129 (460)
+.+|++++|.|.+.+.+.+ ..+.|+|+ +.... .....++..... .+|.|.+++.+|+|.|+|
T Consensus 145 v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C 224 (253)
T 3uzq_A 145 VSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFC 224 (253)
T ss_dssp ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred EeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEE
Confidence 9999999999999887654 37999984 22211 001123332222 259999999999999999
Q ss_pred EEEcCCCCcceeeEEEEEeeCCC
Q psy535 130 TPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 130 ~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
.|.|..+.. ...-..|.|...+
T Consensus 225 ~~~n~~~~~-fg~gt~l~v~~~~ 246 (253)
T 3uzq_A 225 QRSNEVPWT-FGGGTKLEIKRPL 246 (253)
T ss_dssp EECSSSSCC-BCCCEEEEECCC-
T ss_pred EEccCCCcE-ECCCEEEEEcCCC
Confidence 999865433 2333345555443
No 311
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.70 E-value=1.9e-16 Score=136.57 Aligned_cols=151 Identities=21% Similarity=0.287 Sum_probs=93.0
Q ss_pred cceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE--
Q psy535 9 ETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI-- 80 (460)
Q Consensus 9 ~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-- 80 (460)
.+|+.+..+ ++|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|. + ..|....+.+|++++|.|.+
T Consensus 70 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---~~p~~~~v~~G~~v~L~C~~~~ 144 (268)
T 3mj6_A 70 QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--P---EEPRDLRVRVGDTTQMRCSIQS 144 (268)
T ss_dssp TTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C---CCCSEEEEETTCCEEECCBCEE
T ss_pred cCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--c---cCCCccccccCCcEEEEEEecC
Confidence 477777443 699999999999999999999875543 2344555553 1 24556778899999999999
Q ss_pred -ecCCCCCeEEEeeCCeec-Cc-------------------cccccEEE-----eecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 81 -KANPTFQYVTWTKDKRLL-EP-------------------YQTKDIVV-----MQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 81 -~~~~~~~~v~W~~~~~~~-~~-------------------~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+.|.+ .+.|++++... .. ....++.. ..++.|.|.++..+|+|.|+|.|.|.
T Consensus 145 ~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 223 (268)
T 3mj6_A 145 TEEKRVT-KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVG 223 (268)
T ss_dssp SSSSCCC-EEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEET
T ss_pred CCCCCcc-ceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcC
Confidence 454554 89999943211 00 00112222 23467999999999999999999997
Q ss_pred CCCcceeeEEEEEe-eCCCceeeCCCcccccCCCC
Q psy535 135 HGTQGSSGQMEVLV-RKPPAFTIKPEAMYQRKVGE 168 (460)
Q Consensus 135 ~g~~~~~~~~~v~v-~~~p~~~~~~~~~~~~~~g~ 168 (460)
.|.. ...+.|.| ..+|.+.+.|... .+..++
T Consensus 224 ~g~~--~~~~~l~V~~~~p~~~~~p~~~-~~~~~q 255 (268)
T 3mj6_A 224 KLES--RKTIVLHVVQDEFQRTISPTPP-TDKGQQ 255 (268)
T ss_dssp TEEE--EEEEEEEEECC------------------
T ss_pred CceE--EEEEEEEEEcCCCeeeeCCCCC-CCCcce
Confidence 7764 44455555 4566666666544 344444
No 312
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=117.79 Aligned_cols=103 Identities=31% Similarity=0.502 Sum_probs=83.2
Q ss_pred cEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCcee
Q psy535 333 IVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD 411 (460)
Q Consensus 333 ~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (460)
.+.+.+...+|.+|.++.+.... +++.|+|++|.+.++++.+|.|+|+..+. ..
T Consensus 8 ~~~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~-------------------------~~ 62 (119)
T 2ed7_A 8 KPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGD-------------------------NR 62 (119)
T ss_dssp CSSCCCSSSSCCCCSCCEEEEECSSCEEEECCCCSCCSSCEEEEEEEEEESSC-------------------------CC
T ss_pred CccCCCCCCCCcCCcceEEEecCCCEEEEEEeCCCCCCCcEEEEEEEEEeCCC-------------------------Cc
Confidence 33345566779999999998876 69999999998878899999999997543 01
Q ss_pred eeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 412 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
|..........+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus 63 ~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 111 (119)
T 2ed7_A 63 ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ 111 (119)
T ss_dssp CEEEECCCTTCCEEEECSCCSSSEEEECCEEEESSCBCSCCCCEEEECC
T ss_pred ceeeEeecCCceEEEeCCCCCCCEEEEEEEEEcCCccCCCcCCEEEEeC
Confidence 2222233356789999999999999999999999999999999998874
No 313
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.70 E-value=1.3e-16 Score=135.55 Aligned_cols=172 Identities=12% Similarity=0.152 Sum_probs=109.6
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee----------------CCeecCcc-ccccEEEee----cCeEEE
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK----------------DKRLLEPY-QTKDIVVMQ----NGSLLF 116 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~----------------~~~~~~~~-~~~~~~~~~----~~~l~i 116 (460)
.+...|....+.+|++++|.|.+.+.+.+ .|.|+| ++...... ...++.... +.+|.|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I 81 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 81 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCC-SEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCce-EEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence 34556777888999999999999887665 799998 22222211 113444433 236999
Q ss_pred eecCCCCCeEEEEEEEcCCCC--cceeeEEEEEee------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC--e
Q psy535 117 TRVNQNHQGRYTCTPYNAHGT--QGSSGQMEVLVR------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP--T 186 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~~~g~--~~~~~~~~v~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~--~ 186 (460)
.+++.+|+|.|+|.+.+..+. ........|.|. .+|.+.+.+.....+..|+.++|.|.+ .+.+++ .
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~---~g~~p~~~~ 158 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVE 158 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE---EEEBSSCEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEE---ccCcCCceE
Confidence 999999999999999875431 112222334443 255554433222245669999999998 454443 8
Q ss_pred eEEEcCCCccCCcccEE----------------EecceEEEcccccee-ceEEEEEEecccceee
Q psy535 187 ITWQRRDGVALPKNRVK----------------IVGGNITIEGLRRVD-FGYYECVVSNEVATIV 234 (460)
Q Consensus 187 ~~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~~~ 234 (460)
+.|+++ +..+...... .....|.|......| .|.|+|.|.|......
T Consensus 159 v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 159 LSWWVN-GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp EEEEET-TEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred EEEEEC-CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 999994 4443321111 011236777777777 8999999998765543
No 314
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.70 E-value=9.6e-17 Score=134.43 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=100.3
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR 96 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~ 96 (460)
+++|.|.+++.+|+|.|+|.|.+..+........+.+..+|.+...+.......++.+.+.|.+.+.++++.+.|++++.
T Consensus 82 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~ 161 (225)
T 4fmk_A 82 DATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLG 161 (225)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSC
T ss_pred cEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCc
Confidence 35899999999999999999999877655566667777777766666556666677788887776655555899999876
Q ss_pred ecCccccccEEEee------cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC
Q psy535 97 LLEPYQTKDIVVMQ------NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP 151 (460)
Q Consensus 97 ~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~ 151 (460)
.+... ....... .+.|.|.++..+|+|.|+|.|.|..+....+..++|.|++.
T Consensus 162 ~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y~ 220 (225)
T 4fmk_A 162 GEAKD--TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYH 220 (225)
T ss_dssp CEEEE--EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTTC
T ss_pred cccCC--cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEEC
Confidence 65321 1111111 23599999999999999999999988887888888888764
No 315
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.70 E-value=2.5e-16 Score=134.90 Aligned_cols=168 Identities=15% Similarity=0.224 Sum_probs=101.5
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--C-ee--cCccc-------------cccEEE----eecCeE
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--K-RL--LEPYQ-------------TKDIVV----MQNGSL 114 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~-~~--~~~~~-------------~~~~~~----~~~~~l 114 (460)
|.+...|....+.+|++++|.|.+.+.+.+ .+.|+|. + .. +.... ..+... ....+|
T Consensus 3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTG-YIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp --------CEEEETTCCEEEECCC-----C-EEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred cccccCCceeEecCCCcEEEEEEEccCCCc-EEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 455566777889999999999999887754 7999982 1 11 00000 011111 122369
Q ss_pred EEeecCCCCCeEEEEEEEcCCCCc-ceeeEEEEEeeC-----------------CCceeeCCCcccccCCCCeEEEEeee
Q psy535 115 LFTRVNQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVRK-----------------PPAFTIKPEAMYQRKVGESVDMHCEA 176 (460)
Q Consensus 115 ~i~~~~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~~-----------------~p~~~~~~~~~~~~~~g~~~~l~C~~ 176 (460)
.|.+++.+|+|.|+|.+.+..+.. .......|.|.. +|.+...+... .+..|+.++|.|.+
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~ 160 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSV-SMPVRKAVTLNCLY 160 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCE-EEETTCCEEECCEE
T ss_pred EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEE-EEcCCCCEEEEEEC
Confidence 999999999999999999876521 122233344443 23445555544 67899999999988
Q ss_pred eccCCCCCCeeEEEcCCCccC--------------CcccEEEe------cceEEEccccceeceEEEEEEec
Q psy535 177 QEAEGTQKPTITWQRRDGVAL--------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSN 228 (460)
Q Consensus 177 ~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n 228 (460)
. ...+.+.+.|++...... ...++... ...|.|.+++.+|+|.|.|.+.+
T Consensus 161 ~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 161 E--TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp E--CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred C--CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 3 234788999998432110 01233332 23599999999999999999974
No 316
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.70 E-value=5.2e-16 Score=133.01 Aligned_cols=168 Identities=18% Similarity=0.271 Sum_probs=111.1
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCC-----CCeEEEeeC--CeecC----------ccccccEEEeec---CeEEE
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPT-----FQYVTWTKD--KRLLE----------PYQTKDIVVMQN---GSLLF 116 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-----~~~v~W~~~--~~~~~----------~~~~~~~~~~~~---~~l~i 116 (460)
+.+...|....+.+|++++|.|.+.+.+. .+.+.|+|. +..+. .....++....+ .+|.|
T Consensus 6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I 85 (264)
T 2gjj_A 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI 85 (264)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence 34556777788899999999999988761 347999984 22111 001234444332 37999
Q ss_pred eecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC------------------cee-eCCCcccccCCCCeEEEEeeee
Q psy535 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP------------------AFT-IKPEAMYQRKVGESVDMHCEAQ 177 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p------------------~~~-~~~~~~~~~~~g~~~~l~C~~~ 177 (460)
.+++.+|+|.|+|.+.+..+.. ......|.|..+| .+. ..+... .+..|+.++|.|.+
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~-~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~- 162 (264)
T 2gjj_A 86 GSVKAEDLAVYYCQQYSNYPWT-FGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE-VVKTGASVKISCKA- 162 (264)
T ss_dssp SSCCGGGCEEEEEEECSSSSCE-ECCCEEEEEECC-------------------CCEEEECCCE-EECTTCCEEEEEEE-
T ss_pred CCCCHHHCEEEEEEEecCCccE-ecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCE-EEcCCCcEEEEEEE-
Confidence 9999999999999998865421 1122345555442 222 222223 57899999999998
Q ss_pred ccCCCCC--CeeEEEcCC-CccCC------------------cccEEEe------cceEEEccccceeceEEEEEEecc
Q psy535 178 EAEGTQK--PTITWQRRD-GVALP------------------KNRVKIV------GGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 178 ~~~~~p~--~~~~W~~~~-~~~~~------------------~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+.+. +.+.|++++ +.... ..++... ...|.|.++..+|+|.|.|.+.|.
T Consensus 163 --~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 163 --SGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp --ESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred --eCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 45553 799999853 11110 1233332 237999999999999999999985
No 317
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.70 E-value=8.9e-17 Score=135.31 Aligned_cols=120 Identities=19% Similarity=0.304 Sum_probs=90.6
Q ss_pred EeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC---eeEEcceeeeecceeeE-EEEEEE-ecCCCCCe
Q psy535 14 IKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA---KVTFTPTVQYLPFRLQG-VVQCHI-KANPTFQY 88 (460)
Q Consensus 14 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~~~~~~~~ 88 (460)
+..++.|.|.+++.+|+|.|+|.|.+..+......+.|.|..+| .+...+....+.+|+.+ .|.|.+ .+.|.+ .
T Consensus 73 ~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p-~ 151 (231)
T 2pet_A 73 LDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP-K 151 (231)
T ss_dssp ECTTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC-E
T ss_pred cCCCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC-E
Confidence 87888999999999999999999999873334778889998764 44445555566788887 999999 777765 8
Q ss_pred EEEeeCCeecCccc--cccEEEeec------------CeEEEeecCCCCCeEEEEEEEcC
Q psy535 89 VTWTKDKRLLEPYQ--TKDIVVMQN------------GSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 89 v~W~~~~~~~~~~~--~~~~~~~~~------------~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
+.|++++..+.... ..+..+... +.|.|.....+|+|.|+|.|.|.
T Consensus 152 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 152 ITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp EEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred EEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 99999999886433 122222221 45788755666799999999995
No 318
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.69 E-value=2.6e-16 Score=131.66 Aligned_cols=174 Identities=14% Similarity=0.205 Sum_probs=106.9
Q ss_pred cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~ 118 (460)
.|....+.+|++++|.|.+.+.+. ...+.|+|++ ..+. .....++.+.. +.+|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence 455667889999999999988651 3479999853 2210 00124555443 24799999
Q ss_pred cCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcC
Q psy535 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRR 192 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~ 192 (460)
++.+|+|.|+|.+.+..+.. ......|.|.. +|.+...+... .+..|+.++|.|.+ .+ .|.+ .+.|+++
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~-~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W~~~ 160 (227)
T 1mju_H 86 LTSDDSAVYYCANKLGWFPY-WGQGTLVTVSAAKTTAPSVYPLAPVC-GDTSGSSVTLGCLV---KGYFPEPVTLTWNSG 160 (227)
T ss_dssp CCGGGCEEEEEEEEETTEEE-ECCCEEEEECSSCCBCCEEEEECCCC-------CEEEEEEE---EEEBSSCCEEEEGGG
T ss_pred CCcccCEEEEEEECCCCceE-EcCcEEEEEcCCCCCCCEEEEecCCc-cccCCCcEEEEEEe---ecEeCCCeEEEEecC
Confidence 99999999999998753211 11123455543 34444332222 35679999999999 45 4666 9999985
Q ss_pred CCccCC---cccE-----EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535 193 DGVALP---KNRV-----KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242 (460)
Q Consensus 193 ~~~~~~---~~~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~ 242 (460)
+. .+. .... ....+.|.|.....++ |.|+|.|.|..+.......+.+.
T Consensus 161 g~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~ 216 (227)
T 1mju_H 161 SL-SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR 216 (227)
T ss_dssp TB-CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred CC-cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence 43 321 1111 1123468888888777 99999999977665555544444
No 319
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.69 E-value=9.2e-17 Score=136.74 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=88.9
Q ss_pred eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec-CCCCCeEEEeeCCee
Q psy535 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA-NPTFQYVTWTKDKRL 97 (460)
Q Consensus 19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~v~W~~~~~~ 97 (460)
+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+... ...|..+.|.|.+.+ .|.+..|+|+++|..
T Consensus 83 sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~v~~~~~~~-~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~ 160 (248)
T 3pv7_A 83 SLRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLDQV-GMKENEDKYMCESSGFYPEAINITWEKQTQK 160 (248)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred EEEeCCCCHHHCeEEEEEEEeCCccc-eeEEEEEEecCCceEEecCCc-cccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence 59999999999999999999987654 678899999999887766533 445778889999998 555437999999864
Q ss_pred cCccc-----c--ccEEEe------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCce
Q psy535 98 LEPYQ-----T--KDIVVM------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF 154 (460)
Q Consensus 98 ~~~~~-----~--~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~ 154 (460)
+.... . ...... ....|.|.....+|.|.|+|.|.|..+....+..+.|.| ..|.+
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V-~~p~~ 229 (248)
T 3pv7_A 161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA-ARHSL 229 (248)
T ss_dssp SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--------
T ss_pred CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE-cCCCC
Confidence 42110 0 011111 123578888889999999999999988776777777777 34444
No 320
>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.69 E-value=1.7e-16 Score=118.14 Aligned_cols=109 Identities=26% Similarity=0.468 Sum_probs=87.9
Q ss_pred CCCCCCCcEEEEccCCCCCCCcceEEE-eec-ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535 326 GDGMLSNIVVVKTKGPKPGPPRNVSVT-EVN-NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~~p~~~~~~-~~~-~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (460)
|.+.+|..+.+.+...+|.+|.++.+. ... +++.|+|++|.+. +.+|.+|.|+|+..+.
T Consensus 1 G~s~~S~~~~~~t~~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~------------------ 62 (120)
T 2crm_A 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSN------------------ 62 (120)
T ss_dssp CCCTTCSCCSCCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSS------------------
T ss_pred CCCCCcCCEEEEeCCCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCC------------------
Confidence 567888888888888889999998887 454 6999999998876 4589999999997532
Q ss_pred cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...|..+.. ...+.++|.+|.|++.|.|||+|+|..|.|++|+.+.++|.
T Consensus 63 ------~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~ 112 (120)
T 2crm_A 63 ------GNKWEMIYS--GATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP 112 (120)
T ss_dssp ------SCCCEEEEC--SSCSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCC
T ss_pred ------CcCCEEEEe--ccccEEEECCCCCCCEEEEEEEEEcCCccCCCcccEEEEcC
Confidence 012333321 34678999999999999999999999999999999888874
No 321
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Probab=99.69 E-value=2.7e-15 Score=137.39 Aligned_cols=221 Identities=16% Similarity=0.129 Sum_probs=147.3
Q ss_pred ccccceeceEEEEEEecccceeeeeeEEEE---ecCCCCCCCceeeeeecceEEEEeecCCCCCC------CceeeEEEE
Q psy535 212 EGLRRVDFGYYECVVSNEVATIVQAAQLVV---EGTQPHAPYNITGVATEFSVTLEWLPGYSGGP------DLKQNYVIW 282 (460)
Q Consensus 212 ~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v---~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~------~~~~~~~~~ 282 (460)
..+.....+.++..|.| .+.+..+..... ....+.+|. +.......++.|+|. +...++ .....|.+.
T Consensus 70 ~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~~~~~~~~~~pP~-v~~~~~~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~ 146 (414)
T 3se4_A 70 LKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAEDKAIVIHIS-PGTKDSVMWALDGLSFTYSLV 146 (414)
T ss_dssp SCCCTTSCEEEEEEEEE-TTEEEEEECCCBCHHHHCCCCCCE-EEEEECSSCEEEEEE-CSSSSCTTTGGGGSSCEEEEE
T ss_pred ccccCCCcEEEEEEEee-CCcCCCEecCceeecccceeCCCe-EEEEEcCCEEEEEEE-cCCCCCceeeeecCcEEEEEE
Confidence 34566677889999999 443332211111 122344454 455555668999999 432221 134689888
Q ss_pred EEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcC--CCCCCCCCcEEEEccCCCC-CCCcceEEEeecceEE
Q psy535 283 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV 359 (460)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~--~G~~~~s~~~~~~~~~~~P-~~p~~~~~~~~~~~v~ 359 (460)
|+..+......... ....+.|.+|.++..|.+++.|.|. .|.|..|....+.+...+| .+|.++.+.....++.
T Consensus 147 y~~~~~~~~~~~~~---~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~~~~~ 223 (414)
T 3se4_A 147 IWKNSSGVEERIEN---IYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV 223 (414)
T ss_dssp EEETTTCCEEEEEE---ECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEETTEEE
T ss_pred EEECCCCceEEEec---CCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEecCCeE
Confidence 88776554333322 4567999999999999999999994 6778888888888776544 6899999887667899
Q ss_pred EEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC-CCCcceEEEC-CCCcCceEE
Q psy535 360 ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT-PPGSTQITIN-RLTPATTYE 437 (460)
Q Consensus 360 l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~-~L~p~~~Y~ 437 (460)
|+|++|.. ..+|.|+|+.... .. ....+...|..+... ....+.+.+. +|.+++.|.
T Consensus 224 l~W~pp~~----~~~Y~v~y~~~~~-~~----------------~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~ 282 (414)
T 3se4_A 224 LKWDYTYA----NMTFQVQWLHAFL-KR----------------NPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYL 282 (414)
T ss_dssp EEEECSSS----SCEEEEEEEESGG-GS----------------CCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEE
T ss_pred EEECCCCC----CeEEEEEEEehhc-cc----------------cccccccCceECCCccCCCCCEEcCCcccccCccEE
Confidence 99999742 3499999996300 00 000012234433211 1234555665 699999999
Q ss_pred EEEEEeecCCCCCCCceeEeec
Q psy535 438 FQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 438 ~~v~a~n~~G~s~~s~~~~~~T 459 (460)
|+|+|.|..|.|++|....+.|
T Consensus 283 ~rV~A~n~~g~s~~s~~~~~~t 304 (414)
T 3se4_A 283 LRVQASDGNNTSFWSEEIKFDT 304 (414)
T ss_dssp EEEEEECSSSEEEECCCEEEET
T ss_pred EEEEEecCCCcccccccccccc
Confidence 9999999999999998888776
No 322
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.69 E-value=7.7e-16 Score=133.19 Aligned_cols=182 Identities=15% Similarity=0.227 Sum_probs=112.0
Q ss_pred ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEeec-----CeEEEeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQN-----GSLLFTRV 119 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~-----~~l~i~~~ 119 (460)
|....+.+|++++|.|.+.+.. +...+.|+|.. .... .....++.+..+ .+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL 86 (280)
T ss_dssp CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 6667788999999999998752 23479999832 1110 001134444432 26999999
Q ss_pred CCCCCeEEEEEEEcCC-------CCcceeeEEEEEeeC---------------CCceeeCCCcccccCCCCeEEEEeeee
Q psy535 120 NQNHQGRYTCTPYNAH-------GTQGSSGQMEVLVRK---------------PPAFTIKPEAMYQRKVGESVDMHCEAQ 177 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~-------g~~~~~~~~~v~v~~---------------~p~~~~~~~~~~~~~~g~~~~l~C~~~ 177 (460)
+.+|+|.|+|.+.+.. ..........|.|.. ++.+...+. ..+..|++++|.|.+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~--~~v~~G~~v~L~C~~- 163 (280)
T 3fku_X 87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS--VSKGLRQTATLTCTG- 163 (280)
T ss_dssp CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE--EEECTTCCEEEEEEC-
T ss_pred ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc--EEEecCCCEEEEEEe-
Confidence 9999999999998861 111122233444444 455554454 378899999999998
Q ss_pred ccCC-CC-CCeeEEEcCCC-ccC-------------CcccEEEe----cceEEEccccceeceEEEEEEecccce---ee
Q psy535 178 EAEG-TQ-KPTITWQRRDG-VAL-------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVAT---IV 234 (460)
Q Consensus 178 ~~~~-~p-~~~~~W~~~~~-~~~-------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~---~~ 234 (460)
.+ .+ .+.+.|++... ... ...++... ...|.|.+++.+|+|.|.|.+.|..+. ..
T Consensus 164 --~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g 241 (280)
T 3fku_X 164 --NSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFG 241 (280)
T ss_dssp --CCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEB
T ss_pred --cCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEEC
Confidence 44 33 47899987321 111 01233332 124999999999999999999987521 22
Q ss_pred eeeEEEEecCCCCCC
Q psy535 235 QAAQLVVEGTQPHAP 249 (460)
Q Consensus 235 ~~~~l~v~~~~p~~p 249 (460)
....|.|...++.+|
T Consensus 242 ~~t~l~V~~~~~~~P 256 (280)
T 3fku_X 242 GGTKLTVLGQPKAAP 256 (280)
T ss_dssp CCCEEEEC-------
T ss_pred CCEEEEECCCCCCCC
Confidence 334566654433333
No 323
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.69 E-value=8.6e-17 Score=133.39 Aligned_cols=130 Identities=17% Similarity=0.177 Sum_probs=93.2
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEEEE
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
..+|+.+..++ +|.|.+++.+|+|.|+|.|.+..+........|.|. .+|.+...+.......|+.++|.|.+
T Consensus 60 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~ 139 (212)
T 1q0x_L 60 VPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTI 139 (212)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEE
T ss_pred ccccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEE
Confidence 35788876643 899999999999999999999766433345667773 46666655444344568899999999
Q ss_pred ecCCCC-CeEEEeeCCeecCcccc-ccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 81 KANPTF-QYVTWTKDKRLLEPYQT-KDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 81 ~~~~~~-~~v~W~~~~~~~~~~~~-~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
.+.+++ ..|+|+|+|..+..... .......+ ..|.|.++..+|+|.|+|.|.|....
T Consensus 140 ~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 140 TDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp EEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred EEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 986543 37999999998753211 01111111 25889999999999999999986543
No 324
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.69 E-value=9.8e-17 Score=135.64 Aligned_cols=134 Identities=14% Similarity=0.155 Sum_probs=95.4
Q ss_pred cccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEE
Q psy535 7 SLETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHI 80 (460)
Q Consensus 7 ~~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~ 80 (460)
..++|+.+..+ ++|.|.+++.+|+|.|+|.+.+..+........|.|. .+|.+...+......+|+.++|.|.+
T Consensus 80 ~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~ 159 (237)
T 3sob_L 80 GVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL 159 (237)
T ss_dssp TCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEE
T ss_pred CCCCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEE
Confidence 34678887743 4899999999999999999998765433455677774 45666555544445568889999999
Q ss_pred ecCCC-CCeEEEeeCCeecCccc--cccE------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 81 KANPT-FQYVTWTKDKRLLEPYQ--TKDI------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 81 ~~~~~-~~~v~W~~~~~~~~~~~--~~~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
.+.++ .+.++|+++|..+.... .... .......|.|..+..+|+|.|+|.|.|.......
T Consensus 160 ~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 228 (237)
T 3sob_L 160 NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV 228 (237)
T ss_dssp EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred cccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCce
Confidence 88544 45899999999876321 0000 0111235888999999999999999998755433
No 325
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A
Probab=99.69 E-value=7e-16 Score=128.98 Aligned_cols=185 Identities=16% Similarity=0.287 Sum_probs=118.3
Q ss_pred CCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCC----Ceeeeecc---CCCCceEEEccCccCccE
Q psy535 244 TQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK----DWLPIPVT---PPGSTQITINRLTPATTY 315 (460)
Q Consensus 244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~i~~l~~~~~~ 315 (460)
.+|..|.++.+ ......++++|.++..++......|.+.|+..... .+...... ......+...++.....|
T Consensus 28 ~pP~~P~~l~C~~~~~~~~~c~W~p~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~~Y 107 (236)
T 1axi_B 28 NSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPY 107 (236)
T ss_dssp ----CCCEEEEEBSSSSCEEEEECCC--------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSSEE
T ss_pred CCCCCCcCCeEEeCCCCEEEEEecCCCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccceE
Confidence 47888888864 34667899999986554433113566666544322 23332211 113344556678889999
Q ss_pred EEEEEEEcCCCCCCCCCcEEEEcc-CCCCCCCcceE--EEeec-----ceEEEEecCCCCC---Cc-cceEEEEEEEEcC
Q psy535 316 EFQVVGKNELGDGMLSNIVVVKTK-GPKPGPPRNVS--VTEVN-----NGFVISWQPPLER---AS-LIQYYLIKYRTDG 383 (460)
Q Consensus 316 ~~~~~a~n~~G~~~~s~~~~~~~~-~~~P~~p~~~~--~~~~~-----~~v~l~W~~~~~~---~~-~i~~y~i~~~~~~ 383 (460)
.|++.| | .+ .+....+... ...|.||.++. +...+ ..+.|+|++|... ++ .+..|+|+|+..+
T Consensus 108 ~~~V~a-N-~~---~s~~~~~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~~~~ 182 (236)
T 1axi_B 108 CIKLTS-N-GG---TVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN 182 (236)
T ss_dssp EEEEEE-T-TE---EEEEEEEEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETT
T ss_pred EEEEEE-C-Cc---cCCCeEeecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEEECC
Confidence 999999 9 22 3334444332 23589999995 44432 2499999998643 34 6899999999764
Q ss_pred CeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCC--CCCCCceeEeecC
Q psy535 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG--DGMLSNIVVVKTK 460 (460)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G--~s~~s~~~~~~T~ 460 (460)
. ..|..+.. ...+++.|.+|.|++.|.|+|+|.+..| +|+||.++.++|+
T Consensus 183 ~-------------------------~~w~~~~~--~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~~~~~~p 234 (236)
T 1axi_B 183 E-------------------------TKWKMMDP--ILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLP 234 (236)
T ss_dssp C-------------------------SSCEECCC--BSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred C-------------------------CceEEEec--cCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCCEEEECC
Confidence 2 12322221 2457899999999999999999999999 9999999999875
No 326
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.69 E-value=9.5e-16 Score=127.92 Aligned_cols=171 Identities=9% Similarity=0.080 Sum_probs=108.1
Q ss_pred ceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--ee---cC------------ccccccEEEeec-----CeEEEeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RL---LE------------PYQTKDIVVMQN-----GSLLFTRV 119 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~---~~------------~~~~~~~~~~~~-----~~l~i~~~ 119 (460)
|....+.+|++++|.|.+.+.+. ...+.|+|.. .. +. .....|+....+ .+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 44567889999999999987652 3479999842 11 10 111245555432 37999999
Q ss_pred CCCCCeEEEEEEEcCCC---Cc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEE
Q psy535 120 NQNHQGRYTCTPYNAHG---TQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQ 190 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g---~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~ 190 (460)
+.+|+|.|+|.+.+..| .. .....+.|.|. .+|.+...+... .+..|+.++|.|.+. ...|.+ .+.|+
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~--g~~P~p~~v~W~ 163 (223)
T 1dee_B 87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCE-NSNPSSTVAVGCLAQ--DFLPDSITFSWK 163 (223)
T ss_dssp CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTT-CCCSSSEEEEEEEEE--EEBSSCCEEEEE
T ss_pred CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCc-ccCCCCcEEEEEEEE--EEeCCCeEEEeE
Confidence 99999999999988653 11 11122345554 245444322112 356899999999983 333766 99999
Q ss_pred cCCCccCCcc---------cEEEecceEEEccccc--eeceEEEEEEecccceeeee
Q psy535 191 RRDGVALPKN---------RVKIVGGNITIEGLRR--VDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 191 ~~~~~~~~~~---------~~~~~~~~l~i~~~~~--~~~g~y~C~a~n~~g~~~~~ 236 (460)
+.++..+... ..-.....|.|..... .|.|.|+|.+.|..+.....
T Consensus 164 ~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~ 220 (223)
T 1dee_B 164 YKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD 220 (223)
T ss_dssp ETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred ccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence 9444343220 0001123467766655 67899999999998876543
No 327
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.69 E-value=3.6e-17 Score=135.59 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=96.6
Q ss_pred ccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCC-CcceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEEE
Q psy535 8 LETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQCH 79 (460)
Q Consensus 8 ~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~ 79 (460)
..+|+.+... ++|.|.+++.+|+|.|+|.|.+..+ ......+.|.|. .+|.+...+....+.+|+.++|.|.
T Consensus 55 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~ 134 (211)
T 3tv3_L 55 VPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCL 134 (211)
T ss_dssp SCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEE
T ss_pred CcCcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEE
Confidence 4578886554 3899999999999999999999877 233566788887 5777777665555557999999999
Q ss_pred EecCCC-CCeEEEeeCCeecCcccc-ccEEEee------cCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 80 IKANPT-FQYVTWTKDKRLLEPYQT-KDIVVMQ------NGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 80 ~~~~~~-~~~v~W~~~~~~~~~~~~-~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
+.+.++ .+.+.|+++|..+..... ....... ...|.|.++..+|+|.|+|.|.|..+.
T Consensus 135 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~ 200 (211)
T 3tv3_L 135 ISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 200 (211)
T ss_dssp EEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred eeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence 988533 458999999998753110 1111111 135888888889999999999997654
No 328
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.69 E-value=6e-17 Score=134.49 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=95.9
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE---ecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---EFPAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
.++|+.+...+ +|.|.+++.+|+|.|+|.|.+..+........|.| ..+|.+...+.......|+.++|.|.+.
T Consensus 58 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~ 137 (213)
T 3r06_A 58 VPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVN 137 (213)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEE
T ss_pred CCCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEe
Confidence 46788887543 89999999999999999999876544455677888 5667777666555556687899999998
Q ss_pred cCCC-CCeEEEeeCCeecCccc--cccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 82 ANPT-FQYVTWTKDKRLLEPYQ--TKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 82 ~~~~-~~~v~W~~~~~~~~~~~--~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
+.++ ...++|+++|..+.... ........+ ..|.|.....+|+|.|+|.|.|.....
T Consensus 138 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~ 203 (213)
T 3r06_A 138 NFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA 203 (213)
T ss_dssp EEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred eecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence 8654 34799999999886421 001111111 257788888889999999999976443
No 329
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}
Probab=99.69 E-value=8.7e-16 Score=141.10 Aligned_cols=265 Identities=11% Similarity=0.079 Sum_probs=160.1
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 135 (460)
+..+...|....+..|++++|.|.+.. +.|.|+++|..+... + .....+.|.|.++...|+|.|.|.+.+
T Consensus 203 ~t~i~v~P~~~~v~~Gs~vtl~C~a~~----~~I~W~~ng~~i~~~---r-i~~~~~~L~I~nl~~sd~g~y~~~C~~-- 272 (488)
T 2q7n_A 203 NTETNVFPQDKVVLAGSNMTICCMSPT----KVLSGQIGNTLRPLI---H-LYGQTVAIHILNIPVSENSGTNIIFIT-- 272 (488)
T ss_dssp CSSCCEECTTCEEESSCCCEEEECCSS----CEEEEEETTEECCCE---E-CSSSCEEEECCSCCCCCSSCEEEEEEE--
T ss_pred CCceEECCCCCEEcCCCCEEEEEECCC----CEEEEEECCEECchh---h-ccceEEEEEEeCCCcccCCcEEEEEEc--
Confidence 344556788888899999999999872 279999999887532 1 112234699999999999999887763
Q ss_pred CCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-----CCCCeeE--EEcCCCcc-CCcccEE-Eec
Q psy535 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-----TQKPTIT--WQRRDGVA-LPKNRVK-IVG 206 (460)
Q Consensus 136 g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-----~p~~~~~--W~~~~~~~-~~~~~~~-~~~ 206 (460)
+.. .....+.+..||.. |... .......-.+.|.+..... .+...+. +...+... ....... ...
T Consensus 273 ~~~--i~~~~l~v~~pP~~---P~nl-~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~~~~ 346 (488)
T 2q7n_A 273 DDD--VYGTVVFAGYPPDV---PQKL-SCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNET 346 (488)
T ss_dssp SSC--EEEEEEEEECCCCC---CCSC-EEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCCCSSC
T ss_pred CCe--EEEEEEEeeCCCCC---Cccc-EEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccccCCce
Confidence 221 22556667777753 2222 1111122345555531111 1111222 21111100 0000000 001
Q ss_pred ceEEEccccceeceEEEEEEecccceeeeeeEEEEe---cCCCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEE
Q psy535 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE---GTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIW 282 (460)
Q Consensus 207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~---~~~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~ 282 (460)
....+........+.|++.|.|..|.... .+.+. ..+|.+|.++... .....+.|+|.++...+. ....|.+.
T Consensus 347 ~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S--~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~g-~~l~YeV~ 423 (488)
T 2q7n_A 347 YRLGVQMHPGQEIHNFTLTGRNPLGQAQS--AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTK-INLLCQIE 423 (488)
T ss_dssp EEEEEECCSSCCCCEEEEEEEETTEEEEE--EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECSS-SEEEEEEE
T ss_pred EEEEEcCCCCccEEEEEEEEEeCCCCccc--eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCCC-cceEEEEE
Confidence 12333333224678899999999998544 33332 2367888887754 356799999998754443 45799999
Q ss_pred EEecCCCCeee-eeccCCCCceE--EEccCccCccEEEEEEEEcCCCC---CCCCCcEEEEccC
Q psy535 283 YREQGNKDWLP-IPVTPPGSTQI--TINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKTKG 340 (460)
Q Consensus 283 ~~~~~~~~~~~-~~~~~~~~~~~--~i~~l~~~~~~~~~~~a~n~~G~---~~~s~~~~~~~~~ 340 (460)
|+..+...|.. ..........+ .|.+|.+++.|.|+++|.| .|. |.+|..+.++|.+
T Consensus 424 Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e 486 (488)
T 2q7n_A 424 ICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTE 486 (488)
T ss_dssp EBCTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCC
T ss_pred EEECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCC
Confidence 99877666632 22221112345 9999999999999999999 776 5777777776653
No 330
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}
Probab=99.68 E-value=2.4e-15 Score=122.48 Aligned_cols=178 Identities=18% Similarity=0.190 Sum_probs=130.6
Q ss_pred CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCC
Q psy535 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD 327 (460)
Q Consensus 248 ~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~ 327 (460)
+|.++..........|.|.|+...++. ..|.+.|+.- ..|...-. ......+.|.+|.+...|.++|.|.|..|.
T Consensus 4 ~P~nv~~~s~n~~~iL~W~pp~~~~~~--v~Y~V~y~~~--~~w~~~c~-~~~~~~c~lt~l~~~~~Y~~rV~A~~~~~~ 78 (201)
T 3lqm_A 4 PPENVRMNSVNFKNILQWESPAFAKGQ--LTFTAQYLSY--RIFQDKCM-QTTLTECDFSSLSKYGDHTLRVRAEFADEH 78 (201)
T ss_dssp CCEEEEEEEETTEEEEEEECCCCSSSC--CEEEEEEEET--TEEEEEEE-EESSSEEECTTSCSSSCEEEEEEEEETTEE
T ss_pred CCcccEEEEECCceEEEECCCCCCCCC--eEEEEEEEEC--CCcccCcC-ccCCCEEECCCCccCCCEEEEEEEecCCCc
Confidence 577888777778889999988765554 3599998875 35654222 125678899999999999999999999887
Q ss_pred CCCCCcEEEEc-cCCCCCCCcceEEEeecceEEEEecCCCCCC-c---------cceEEEEEEEEcCCeeeeccccCCCC
Q psy535 328 GMLSNIVVVKT-KGPKPGPPRNVSVTEVNNGFVISWQPPLERA-S---------LIQYYLIKYRTDGSWKTLNKGQIRPE 396 (460)
Q Consensus 328 ~~~s~~~~~~~-~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~-~---------~i~~y~i~~~~~~~~~~~~~~~~~~~ 396 (460)
+.++.. .+.. ....++|| .+.+....++|.|.|.+|...+ + .+..|+|.|...++-.
T Consensus 79 S~~s~~-~f~~~~~t~~~PP-~v~~~~~~~si~v~w~~P~~~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~---------- 146 (201)
T 3lqm_A 79 SDWVQI-TFSPVDDTIIGPP-GMQVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDE---------- 146 (201)
T ss_dssp CCCEEE-EECHHHHSBCCCC-EEEEEEETTEEEEEEECCEEECSSCEEEHHHHCTTCEEEEEEEETTCCC----------
T ss_pred Ccceee-eeeecccCeeCCC-EEEEEEeCCEEEEEEcCCCccCCCcccCHHHhCCceEEEEEEEECCCCc----------
Confidence 766642 3321 12346666 6777666679999999986432 3 4789999998765300
Q ss_pred cccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeec--CCCCCCCceeEeecC
Q psy535 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVVKTK 460 (460)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~--~G~s~~s~~~~~~T~ 460 (460)
.+. + ......+.|.+|.|++.|-|+|+|.+. .|.|.+|+++-++|.
T Consensus 147 --------------~~~-~---~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~ 194 (201)
T 3lqm_A 147 --------------KFQ-I---TPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTT 194 (201)
T ss_dssp --------------CEE-E---CCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEECC
T ss_pred --------------EEE-E---EecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEeC
Confidence 000 0 124567899999999999999999997 688999999988873
No 331
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.68 E-value=2.6e-16 Score=134.51 Aligned_cols=142 Identities=14% Similarity=0.273 Sum_probs=99.8
Q ss_pred ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC---CcceeeeEEEEec----------------CCeeEEcc
Q psy535 8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG---EPQAAQAYLNVEF----------------PAKVTFTP 63 (460)
Q Consensus 8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~ 63 (460)
..+|+.+..++ +|.|.+++.+|+|.|+|.+.+..+ ......+.|.|.. ++.+...|
T Consensus 66 ~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p 145 (256)
T 3umt_A 66 FKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP 145 (256)
T ss_dssp GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC
T ss_pred ccceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC
Confidence 45789988654 499999999999999999998721 1124456788874 66777778
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEeecC---eEEEeecCCCCCeEEE
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVMQNG---SLLFTRVNQNHQGRYT 128 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~ 128 (460)
....+.+|++++|.|.+.+.+.+ .+.|+|. +..+. .....++.....+ +|.|.+++.+|+|.|+
T Consensus 146 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 224 (256)
T 3umt_A 146 SSLSASLGERVSITCRASQDIGS-NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYY 224 (256)
T ss_dssp SEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred CeEEEECCCCEEEEEEEecCCCc-EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEE
Confidence 88889999999999999997766 7999984 22111 0012333333222 4999999999999999
Q ss_pred EEEEcCCCCcceeeEEEEEeeCC
Q psy535 129 CTPYNAHGTQGSSGQMEVLVRKP 151 (460)
Q Consensus 129 C~~~~~~g~~~~~~~~~v~v~~~ 151 (460)
|.+.+..... ...-..|.|..+
T Consensus 225 C~~~~~~~~~-fg~gt~L~V~~~ 246 (256)
T 3umt_A 225 CLQYASSPPT-FGGGTKLEIKRA 246 (256)
T ss_dssp EEECSSSSCE-ECCCEEEEEC--
T ss_pred EEEeeCCCcE-ECCCEEEEEECC
Confidence 9998854322 333445555543
No 332
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.68 E-value=1.3e-16 Score=121.17 Aligned_cols=110 Identities=26% Similarity=0.370 Sum_probs=91.2
Q ss_pred CCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535 326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~ 401 (460)
|.|.+|..+.+.+...+|. +|.++++...+ +++.|+|++|.. .++.+.+|+|+|+..+..
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~---------------- 64 (132)
T 1x5h_A 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRK---------------- 64 (132)
T ss_dssp CCCCCCCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEE----------------
T ss_pred CcCCCCCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCC----------------
Confidence 6678888999999888887 78999998776 699999999976 678999999999975531
Q ss_pred ccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
.|..........+.+.|.+|.|++.|.|+|+|+|..|.|++|..+.++|.
T Consensus 65 ---------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 114 (132)
T 1x5h_A 65 ---------SDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETF 114 (132)
T ss_dssp ---------EEEECCBCCTTCCEEEEECCCSSCEEEEECEEEETTEEEEECCCEEEECC
T ss_pred ---------CccEEEEeCCCccEEEeCCCCCCCEEEEEEEEEcCCccCCCCcCEEeEcC
Confidence 12222223457789999999999999999999999999999999999884
No 333
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=116.21 Aligned_cols=109 Identities=22% Similarity=0.359 Sum_probs=86.6
Q ss_pred CCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccccccc
Q psy535 326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (460)
|.|..|..+.+.+.+..|. +|.++++...+ +++.|+|++|.. +.|.+|.|+|+..+..
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~--g~i~~Y~v~~~~~~~~------------------ 60 (119)
T 2ee2_A 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE--KIVESYQIRYWAAHDK------------------ 60 (119)
T ss_dssp CCCCCSSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCSC--TTCCEEEEEEEESSSC------------------
T ss_pred CCCCCCCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEecCCCC--CccceEEEEEEECCCc------------------
Confidence 5677788888888877775 78899998876 699999999977 8899999999875420
Q ss_pred ceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...|..+. .....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus 61 -----~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 111 (119)
T 2ee2_A 61 -----EEAANRVQ-VTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTK 111 (119)
T ss_dssp -----GGGCEEEE-EETTCSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEECC
T ss_pred -----ccCcEEEE-cCCCEeEEEECCCCCCCEEEEEEEEEcCCccCCCCCCEEEECC
Confidence 00011111 1235678999999999999999999999999999999999884
No 334
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.68 E-value=3.9e-16 Score=133.52 Aligned_cols=163 Identities=18% Similarity=0.271 Sum_probs=104.9
Q ss_pred cceeeeecceeeEEEEEEEecC--CCCCeEEEeeCC--eecC----------ccccccEEEeecC---eEEEeecCCCCC
Q psy535 62 TPTVQYLPFRLQGVVQCHIKAN--PTFQYVTWTKDK--RLLE----------PYQTKDIVVMQNG---SLLFTRVNQNHQ 124 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~~---~l~i~~~~~~d~ 124 (460)
.|....+.+|++++|.|.+.+. +. +.+.|+|.. .... .....++.....+ +|.|.+++.+|+
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 86 (256)
T 3ux9_B 8 QPPSVSGAPGQRVTISCSGSSSNIGS-NYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE 86 (256)
T ss_dssp CCSEEEECTTCCEEEEEECCTTTTTT-SCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred cCCcEEEcCCCcEEEEEecCCCCCCC-ceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence 3445778899999999999876 44 479999842 1110 0012344433332 699999999999
Q ss_pred eEEEEEEEcCCCCc-ceeeEEEEEeeCCCc--------------------eeeCCCcccccCCCCeEEEEeeeeccCCCC
Q psy535 125 GRYTCTPYNAHGTQ-GSSGQMEVLVRKPPA--------------------FTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183 (460)
Q Consensus 125 G~y~C~~~~~~g~~-~~~~~~~v~v~~~p~--------------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p 183 (460)
|.|+|.+.+..+.. .......|.|..++. ....+... .+..|+.++|.|.+ .+.+
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~~~~ 162 (256)
T 3ux9_B 87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGG-LVQPGGSLRLSCAA---SGFT 162 (256)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCE-EECTTCCEEEEEEE---ESSC
T ss_pred EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCe-EEcCCCeEEEEEEE---eCCc
Confidence 99999999865421 122334455554431 11122222 47899999999999 5555
Q ss_pred --CCeeEEEcCCCc-cC------------------CcccEEEe------cceEEEccccceeceEEEEEEecc
Q psy535 184 --KPTITWQRRDGV-AL------------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSNE 229 (460)
Q Consensus 184 --~~~~~W~~~~~~-~~------------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~ 229 (460)
.+.+.|++++.. .+ ...++.+. ...|.|.++..+|+|.|.|.+.|.
T Consensus 163 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 235 (256)
T 3ux9_B 163 FSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID 235 (256)
T ss_dssp GGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred ccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence 689999985311 11 01133332 124999999999999999999986
No 335
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.68 E-value=4.1e-16 Score=124.37 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=97.3
Q ss_pred ceEEEeeCC--------eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535 10 TRVVIKKDG--------TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 10 ~r~~~~~~~--------~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
..+++..+| .|.|.+++.+|+|.|+|.+.+... +..+.|.|..++.+...+ ...+.+|+++.|.|.+.
T Consensus 35 ~~~~W~~~g~~~~~~~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~ 110 (170)
T 3ry4_A 35 DSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSW 110 (170)
T ss_dssp SCEEEEETTEECTTCCSSEEEEECCGGGCEEEEEEETTSBC---CCCEEEEEECCSEEEECS-CSEECTTCCEEEEEEEG
T ss_pred ceEEEEECCeEcccCccceEEEecccccCeEEEEEEeCCCc---eEeEEEEEECCceEecCC-CceeecCCeEEEEEECC
Confidence 456666664 588999999999999999997533 456888888776554444 45677899999999996
Q ss_pred cCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535 82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
+.++.+.+.|+++|..+... ..++.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus 111 ~~~p~~~~~W~~~g~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~s~~~~l~V 169 (170)
T 3ry4_A 111 KDKPLVKVTFFQNGKSQKFS-------HLDPTFSIPQANHSHSGDYHCTGNIGYTLF-SSKPVTITV 169 (170)
T ss_dssp GGCCEEEEEEEETTEEEEEE-------SSCCEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEE
T ss_pred CCCCCceEEEEECCeEcccc-------CCCCeEEEEeccccCCEEEEEEEEeCcCcc-ccccEEEEE
Confidence 65554589999999886421 234579999999999999999999988753 455555554
No 336
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.68 E-value=1.5e-16 Score=132.14 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=92.1
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEE
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCH 79 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~ 79 (460)
.++|+.+..++ +|.|.+++.+|+|.|+|.|.+..+. .......|.|. .+|.+...+....+.+|+.++|.|.
T Consensus 58 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~ 137 (213)
T 3nl4_L 58 VPSRFKGSGSGTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCV 137 (213)
T ss_dssp CCTTEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEE
T ss_pred CCccEEEecCCCEEEEEECCCChHHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEE
Confidence 36788887654 8999999999999999999997764 33455667773 4566655554445567899999999
Q ss_pred Eec-CCCCCeEEEeeCCeecCccc--------cccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535 80 IKA-NPTFQYVTWTKDKRLLEPYQ--------TKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 80 ~~~-~~~~~~v~W~~~~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
+.+ .| ++.++|+++|..+.... .........+.|.|.++..+|+|.|+|.|.
T Consensus 138 ~~g~~P-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 138 ANKYFP-DVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp EEEEBS-CCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred EecccC-CcEEEEEeCCccCCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 998 66 45899999999875311 011111122469999999999999999998
No 337
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.68 E-value=1.9e-17 Score=139.56 Aligned_cols=170 Identities=12% Similarity=0.196 Sum_probs=93.8
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eec----------CccccccEEEe---ecCeEEEeecCC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLL----------EPYQTKDIVVM---QNGSLLFTRVNQ 121 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~----------~~~~~~~~~~~---~~~~l~i~~~~~ 121 (460)
+.+...|....+.+|++++|.|.+.+.+.+ .+.|+|++ ..+ ......++... .+.+|.|.+++.
T Consensus 24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 24 TTVTQSPASLSMSIGEKVTIRCITSTDIDD-DMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCEEEECSBC-------CCEEEEEEEEESS-CEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred eeEEEcCCeEEEecCCCEEEEEecCCcCCC-eEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 345556777788999999999999887655 69999853 211 00011222222 223799999999
Q ss_pred CCCeEEEEEEEcCCCCcce-eeEEEEEee-CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccC
Q psy535 122 NHQGRYTCTPYNAHGTQGS-SGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVAL 197 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~~~~-~~~~~v~v~-~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~ 197 (460)
+|+|.|+|.+.+..+.... ...+.|... .+|.+...+... .+..|+.++|.|.+ .+ .|.+ .+.|++++. .+
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~---~g~~p~~~~v~W~k~g~-~~ 177 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFL---NNFYPKDINVKWKIDGS-ER 177 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCH-HHHHTTEEEEEEEE---EEEBSSCEEEEEEEC-----
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCH-HhhcCCceEEEEEE---ccccCCceEEEEEECCe-eC
Confidence 9999999999887653211 123333322 266666544333 23468999999998 45 3443 799999544 33
Q ss_pred Ccc-cEE-----------EecceEEEccccceeceEEEEEEecccce
Q psy535 198 PKN-RVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 198 ~~~-~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
... ... .....|.|......|.|.|+|.|.|....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 222 110 11235788888888999999999986543
No 338
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=135.89 Aligned_cols=131 Identities=20% Similarity=0.245 Sum_probs=93.7
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEe
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIK 81 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~ 81 (460)
..+|+.+..++ +|.|.+++.+|+|.|+|.|.|..+........|.|.. +|.+...+.......|+.++|.|.+.
T Consensus 100 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~ 179 (254)
T 2c1o_A 100 DPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLN 179 (254)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred ccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEe
Confidence 34788887654 8999999999999999999987654333345677753 56666544433334577999999998
Q ss_pred cC-CCCCeEEEeeCCeecCccccccE--------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 82 AN-PTFQYVTWTKDKRLLEPYQTKDI--------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 82 ~~-~~~~~v~W~~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
+. |++..++|+|+|..+........ .....+.|.|.++..+|+|.|+|.|.|.....
T Consensus 180 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 180 NFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp EEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred cccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 84 44356999999988764200000 00112469999999999999999999976543
No 339
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.68 E-value=2.5e-16 Score=131.16 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=98.3
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCee-EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV-TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR 96 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~ 96 (460)
++|.|.+++.+|+|.|+|.+.+..+........+.+..++.. ...+....+..++.+.+.|.+.+.|++ .|+|++++.
T Consensus 79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p-~i~W~~~~~ 157 (218)
T 4frw_A 79 GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP-SVTWDTEVK 157 (218)
T ss_dssp CCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC-EEEEEESSC
T ss_pred EEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc-eEEEEECCc
Confidence 479999999999999999999877665455555566554433 334455667778899999999998876 899999988
Q ss_pred ecCcccccc--EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535 97 LLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK 150 (460)
Q Consensus 97 ~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~ 150 (460)
.+....... ......+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V~~ 213 (218)
T 4frw_A 158 GTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHVSH 213 (218)
T ss_dssp CEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCEEC
T ss_pred ccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEECc
Confidence 765321100 001112369999999999999999999999988777777777643
No 340
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.68 E-value=3.4e-16 Score=133.84 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=93.1
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC-------C-cceeeeEEEEecCC---------------ee
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG-------E-PQAAQAYLNVEFPA---------------KV 59 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~-------~-~~~~~~~l~v~~~p---------------~~ 59 (460)
..+|+++..+ ++|.|.+++.+|+|.|+|.|.+..| . .....+.|.|..++ .+
T Consensus 63 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~ 142 (257)
T 1f3r_B 63 LKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKL 142 (257)
T ss_dssp SSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECS
T ss_pred cCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEE
Confidence 3679998763 3999999999999999999999854 1 11234678887543 23
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecCc----------cccccEEEee---cCeEEEeecCCCCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLEP----------YQTKDIVVMQ---NGSLLFTRVNQNHQ 124 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~~----------~~~~~~~~~~---~~~l~i~~~~~~d~ 124 (460)
...|....+.+|++++|.|.+.+.+.+ .+.|+| ++..+.. ....++.... ..+|.|.+++.+|+
T Consensus 143 ~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 221 (257)
T 1f3r_B 143 TQSPSLLSASVGDRVTLSCKGSQNINN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV 221 (257)
T ss_dssp CEETSEECCCTTCCEEEEEECSSCCBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred EccCCEEEEcCCCCEEEEEEECCcCCC-cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhC
Confidence 445667778899999999999988765 799999 5554310 0123333322 23699999999999
Q ss_pred eEEEEEEEcCC
Q psy535 125 GRYTCTPYNAH 135 (460)
Q Consensus 125 G~y~C~~~~~~ 135 (460)
|.|+|.|.|..
T Consensus 222 G~Y~C~a~n~~ 232 (257)
T 1f3r_B 222 ATYFCYQYNNG 232 (257)
T ss_dssp SEEEEEEESSS
T ss_pred EEEEEEEeCCC
Confidence 99999999864
No 341
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.68 E-value=3.6e-15 Score=120.33 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=103.2
Q ss_pred eeecceeeEEEEEEEecCCCCC-eEEEeeCCeecCccccccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535 66 QYLPFRLQGVVQCHIKANPTFQ-YVTWTKDKRLLEPYQTKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~ 143 (460)
..+..|++++|.|.+ +.|.+. .|+|++.+..+ .+.. ......|.|.+++.+|+|.|.|.|.|..+. ....
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l-----~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~--~~~~ 88 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL-----GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT--FQHT 88 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT-----CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE--EEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc-----CcEEecCCccEEEECccCcccCceEEEEEEeCCCc--eEEE
Confidence 577889999999999 776543 79999965444 1222 233457999999999999999999997765 4566
Q ss_pred EEEEeeCCCceee-CCCcccccCCCCeEEEEeeeeccCCCCC----CeeEEEcCCCccCCcccE---EE----------e
Q psy535 144 MEVLVRKPPAFTI-KPEAMYQRKVGESVDMHCEAQEAEGTQK----PTITWQRRDGVALPKNRV---KI----------V 205 (460)
Q Consensus 144 ~~v~v~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~p~----~~~~W~~~~~~~~~~~~~---~~----------~ 205 (460)
+.|.|..+|.... .+. ....|+.+ |.|.+. ...|. +++.|+++ +..+..... .. .
T Consensus 89 ~~ltV~~~P~~~~i~~~---~~~~g~~~-l~C~a~--g~~P~~~~~lti~Wlk~-~~~L~~~~~~~~~~~~~~~~~~~~~ 161 (210)
T 1gsm_A 89 VQLLVYAFPNQLTVSPA---ALVPGDPE-VACTAH--KVTPVDPNALSFSLLVG-GQELEGAQALGPEVQEEEEEPQGDE 161 (210)
T ss_dssp EEEEEEBCCSEEEEESS---SBCTTCCE-EEEEEE--EEBCCCTTTEEEEEEET-TEECTTCEECCCEEEECTTCCSSCC
T ss_pred EEEEEEecCCCcEEccc---eEEeCCce-EEEEeC--CCCCCCCCCcEEEEEEC-CEEcccccccccceecccccccCCc
Confidence 7777788886544 332 34567777 999994 23453 58999994 444433221 11 0
Q ss_pred cc------eEEEccccceeceEEEEEEeccccee
Q psy535 206 GG------NITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 206 ~~------~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.. ++.+......+.+.|+|.|.+.+-..
T Consensus 162 ~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~ 195 (210)
T 1gsm_A 162 DVLFRVTERWRLPPLGTPVPPALYCQATMRLPGL 195 (210)
T ss_dssp CCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred ceEEEEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence 11 23333555566689999999876443
No 342
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.67 E-value=2.3e-15 Score=125.33 Aligned_cols=167 Identities=11% Similarity=0.180 Sum_probs=109.0
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--ee---cC------------ccccccEEEeec-----CeEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RL---LE------------PYQTKDIVVMQN-----GSLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~~------------~~~~~~~~~~~~-----~~l~i~~ 118 (460)
.|....+.+|++++|.|.+.+.+ ....+.|+|.. .. +. .....++....+ .+|.|.+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (220)
T 2fbj_H 6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence 34457788999999999998765 13479999842 21 10 011245555432 3799999
Q ss_pred cCCCCCeEEEEEEEcCCCCc-ceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEc
Q psy535 119 VNQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQR 191 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~ 191 (460)
++.+|+|.|.|.+.+..+.. .......|.|.. +|.+...+ .. .+..|+.++|.|.+. ...|. +.+.|++
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~-~~~~g~~v~L~C~~~--g~~P~~~~~v~W~~ 161 (220)
T 2fbj_H 86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LP-PALSSDPVIIGCLIH--DYFPSGTMNVTWGK 161 (220)
T ss_dssp CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CC-SSSCCSSEEEEEEEE--EEBSCCCEEEEESC
T ss_pred CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cc-cccCCCcEEEEEEEE--eEECCCcEEEEEec
Confidence 99999999999999865421 111223445542 45555444 22 467899999999984 23365 7999999
Q ss_pred CCCccCC---c-------ccEEEecceEEEccccceeceEEEEEEecccceee
Q psy535 192 RDGVALP---K-------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV 234 (460)
Q Consensus 192 ~~~~~~~---~-------~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 234 (460)
++.. +. . ..+. ....|.|......|.|.|+|.+.|..+...
T Consensus 162 ~~~~-~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 162 SGKD-ITTVNFPPALASGGRYT-MSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp CCSS-CEEEECCCEECSSSCEE-EEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred CCEe-cceEecCceECCCCCEE-EEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 5543 21 0 0111 122477887887889999999999887643
No 343
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.67 E-value=6.9e-16 Score=126.74 Aligned_cols=125 Identities=15% Similarity=0.206 Sum_probs=87.2
Q ss_pred ccceEEEe--eCCeEEEeecCCCCCeeEEEEEEeCCCCcc----eeeeEEEEecC---CeeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIK--KDGTLVINPVGSDDSGLYMCEVSNGIGEPQ----AAQAYLNVEFP---AKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C 78 (460)
..+|..+. .+++|.|.+++.+|+|.|+|.|.+..|... ...+.|.|..+ |.+... ....|+.++|.|
T Consensus 53 ~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C 128 (201)
T 1dr9_A 53 YKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIIC 128 (201)
T ss_dssp HHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEE
T ss_pred ccceeEEccCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEE
Confidence 34566553 346999999999999999999999876543 34677777654 332221 124578899999
Q ss_pred EEe-cCCCCCeEEEeeCCeecCccccccEEEeec-CeEE---EeecCCCCCeEEEEEEEcCCCCc
Q psy535 79 HIK-ANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLL---FTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 79 ~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~l~---i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
.+. +.|.+ .|+|+++|..+... ........+ +.+. +..+..+|+|.|+|.|.|..|..
T Consensus 129 ~~~~g~P~p-~i~W~k~g~~l~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~ 191 (201)
T 1dr9_A 129 STSGGFPEP-HLSWLENGEELNAI-NTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV 191 (201)
T ss_dssp EEEEESSCE-EEEEEESSCEECCS-EEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE
T ss_pred ecCCccCCC-EEEEEECCEECccc-cceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee
Confidence 995 77766 89999999988642 222222223 3222 24566789999999999988774
No 344
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.67 E-value=5.6e-16 Score=113.96 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=84.5
Q ss_pred CCCCCCCcEEEEccCCCCC-CCcceEEEeecceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535 326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVNNGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (460)
|.|..|..+.+.+.+.+|. +|.++++....++|.|+|++| ...++.|.+|+|+|+..+...
T Consensus 1 G~G~~S~~v~~~T~e~~P~~~P~~v~~~~~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~---------------- 64 (117)
T 1wj3_A 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNN---------------- 64 (117)
T ss_dssp CCCCCCCCCCCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSS----------------
T ss_pred CcCCCCCCEEEEecCCCCCCCCccEEEEEeCCEEEEEEcCCCccccCCceeEEEEEEEECCCCC----------------
Confidence 5677888889999988886 788888877447999999999 457899999999999765310
Q ss_pred cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
+..+ ....+.+.+. |.+++.|.|+|+|+|.+|.|++|+.+.++|.
T Consensus 65 ---------~~~~---~~~~~~~~~~-L~~~t~Y~~~V~A~n~~G~Gp~S~~v~~~T~ 109 (117)
T 1wj3_A 65 ---------VQVL---NTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRI 109 (117)
T ss_dssp ---------CEEE---EESSSEEEEE-CCCSSCEEEEEEEEESSCCCCBCCCEEECCC
T ss_pred ---------CeEE---eCCCcEEEEE-CCCCCEEEEEEEEECCCccCCCCCCEEEEcC
Confidence 0000 0234567777 9999999999999999999999999999884
No 345
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.67 E-value=9.3e-17 Score=136.96 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=92.6
Q ss_pred cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEec
Q psy535 9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
.+|+.+..++ +|.|.+++.+|+|.|+|.+.+..+........|.|.. +|.+...+....+.+|+.++|.|.+.+
T Consensus 97 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g 176 (252)
T 3bkj_L 97 PDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN 176 (252)
T ss_dssp CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEE
T ss_pred CCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEee
Confidence 5788887654 8999999999999999999987654323445777764 566665444333447889999999988
Q ss_pred CCCC-CeEEEeeCCeecCcc--ccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 83 NPTF-QYVTWTKDKRLLEPY--QTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 83 ~~~~-~~v~W~~~~~~~~~~--~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
.+++ ..|+|+|+|..+... .........+ ..|.|.++..+|+|.|+|.|.|....
T Consensus 177 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 177 FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp EBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred EeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 5443 479999999987532 0001111112 24899999999999999999987654
No 346
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.67 E-value=1e-15 Score=131.74 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=108.8
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCC----CCeEEEeeCC--eecC----------ccccccEEEeec---CeEEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPT----FQYVTWTKDK--RLLE----------PYQTKDIVVMQN---GSLLF 116 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~--~~~~----------~~~~~~~~~~~~---~~l~i 116 (460)
.+.+...|....+.+|++++|.|.+.+.+. ...+.|+|.. ..+. .....++..... .+|.|
T Consensus 15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 94 (268)
T 1x9q_A 15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI 94 (268)
T ss_dssp CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence 445666777888999999999999988762 3479999853 2110 001234444322 36999
Q ss_pred eecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc-----------------------eeeCCCcccccCCCCeEEEE
Q psy535 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA-----------------------FTIKPEAMYQRKVGESVDMH 173 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~-----------------------~~~~~~~~~~~~~g~~~~l~ 173 (460)
.+++.+|+|.|+|.+.+..+.. ......|.|..++. ....+... .+..|+.++|.
T Consensus 95 ~~v~~~DsG~Y~C~~~~~~~~~-~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~-~v~~G~~v~L~ 172 (268)
T 1x9q_A 95 NRVEAEDLGVYFCSQSTHVPWT-FGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGG-LVQPGGAMKLS 172 (268)
T ss_dssp SSCCGGGCEEEEEEECSSSSCE-ECCCEEEC------------------------CGGGCEEEEECCE-EECTTCCEEEE
T ss_pred CCCChhHCEEEEEEEecCCCce-EcCCEEEEEccCccCCCccccccccccccccccccceEEECCCce-EecCCCcEEEE
Confidence 9999999999999998865421 11122333332211 11222333 67899999999
Q ss_pred eeeeccCCCC--CCeeEEEcCC-Ccc--------------------CCcccEEEe------cceEEEccccceeceEEEE
Q psy535 174 CEAQEAEGTQ--KPTITWQRRD-GVA--------------------LPKNRVKIV------GGNITIEGLRRVDFGYYEC 224 (460)
Q Consensus 174 C~~~~~~~~p--~~~~~W~~~~-~~~--------------------~~~~~~~~~------~~~l~i~~~~~~~~g~y~C 224 (460)
|.+ .+.+ .+.+.|++.. +.. ....++... ...|.|.++..+|+|.|.|
T Consensus 173 C~~---~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 249 (268)
T 1x9q_A 173 CVT---SGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYC 249 (268)
T ss_dssp EEE---ESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred EEe---cCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEE
Confidence 998 4554 3789998742 111 012344432 1369999999999999999
Q ss_pred EEecc
Q psy535 225 VVSNE 229 (460)
Q Consensus 225 ~a~n~ 229 (460)
.+.+.
T Consensus 250 ~a~~~ 254 (268)
T 1x9q_A 250 TGASY 254 (268)
T ss_dssp EEEET
T ss_pred EEccC
Confidence 99874
No 347
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.67 E-value=1.6e-16 Score=132.73 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=92.8
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC----cceeeeEEEEec----CCeeEEcceeeeecceeeE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE----PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQG 74 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~ 74 (460)
..+|+++..+ ++|.|.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+...+....+.+|+.+
T Consensus 66 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v 145 (222)
T 1q9r_B 66 VKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMV 145 (222)
T ss_dssp TBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEE
T ss_pred cCCceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcE
Confidence 3579999764 38999999999999999999987641 123456777764 4555444433345679999
Q ss_pred EEEEEEecC-CCCCeEEEeeCCeecCccccccE----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 75 VVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 75 ~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
+|.|.+.+. |.+..|+|+++|..+........ .....+.|.|.++..+| |.|+|.|.|..|...
T Consensus 146 ~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~ 214 (222)
T 1q9r_B 146 TLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 214 (222)
T ss_dssp EEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred EEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCc
Confidence 999999986 55448999999887642111110 11112368999999899 999999999887653
No 348
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.67 E-value=2.2e-16 Score=132.93 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=94.0
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK 93 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~ 93 (460)
+.|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.|.. +|.+...|. ..+.+|++++|.|.+.+.+ ..+.|+|
T Consensus 60 ~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~~--~~~~w~k 136 (242)
T 1p6f_A 60 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTAT--SMFLLLK 136 (242)
T ss_dssp EEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESC-SEEETTCEEEEEEECTTSC--SEEEEEE
T ss_pred eEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCC-CccCCCCcEEEEEecCCCC--CEEEEEE
Confidence 47999999999999999999886432 235667888864 456665553 4578899999999987653 3799999
Q ss_pred CCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC-CCcceeeEEEEEeeCC
Q psy535 94 DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH-GTQGSSGQMEVLVRKP 151 (460)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-g~~~~~~~~~v~v~~~ 151 (460)
+|..+.. .......++.|.|.+++.+|+|.|+|.+.|.. .....+..+.|.|..+
T Consensus 137 ~g~~~~~---~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 137 EGRSSHV---QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp CSSSCEE---EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred CCCccCc---cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 9986642 11112234579999999999999999998864 2233566777777754
No 349
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.67 E-value=3.3e-16 Score=111.71 Aligned_cols=91 Identities=20% Similarity=0.326 Sum_probs=74.5
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~ 131 (460)
.||.|...|....+.+|+++.|.|.+.|.|.+ .|+|+|+|..+......++.+...+ +|.|.++..+|+|.|+|.|
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCC-EEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence 36777778888899999999999999998876 7999999999976555566555443 6999999999999999999
Q ss_pred EcCCCCcceeeEEEE
Q psy535 132 YNAHGTQGSSGQMEV 146 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v 146 (460)
.|..|....+..+.|
T Consensus 83 ~N~~G~~~~~~~l~V 97 (100)
T 3knb_A 83 GNEFGSDSATVNIHI 97 (100)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EECCCEEEEEEEEEE
Confidence 999998655444433
No 350
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.67 E-value=1.6e-15 Score=128.33 Aligned_cols=180 Identities=12% Similarity=0.199 Sum_probs=111.0
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC--------------cc-ccccEEEee-----cCeE
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE--------------PY-QTKDIVVMQ-----NGSL 114 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~--------------~~-~~~~~~~~~-----~~~l 114 (460)
.+...|....+.+|++++|.|.+.+.. ....+.|+|.. ..+. .. ...++.... +.+|
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (242)
T 1hxm_B 3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (242)
T ss_dssp EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence 344567777889999999999998751 23479999842 2110 00 234554442 2369
Q ss_pred EEeecCCCCCeEEEEEEEcCCC-C----cceeeEEEEEeeC-------CCceeeCCCcccccCCCCeEEEEeeeeccCCC
Q psy535 115 LFTRVNQNHQGRYTCTPYNAHG-T----QGSSGQMEVLVRK-------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182 (460)
Q Consensus 115 ~i~~~~~~d~G~y~C~~~~~~g-~----~~~~~~~~v~v~~-------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 182 (460)
.|.+++.+|+|.|+|.+.+... . ........|.|.. +|...+.......+..|+.++|.|.+. ...
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~--g~~ 160 (242)
T 1hxm_B 83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLE--KFF 160 (242)
T ss_dssp EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEE--EES
T ss_pred EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEe--eEE
Confidence 9999999999999999987531 1 1111223444543 343333321222456799999999983 233
Q ss_pred CC-CeeEEEcCCCccCCcc---cEEEe------cceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 183 QK-PTITWQRRDGVALPKN---RVKIV------GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 183 p~-~~~~W~~~~~~~~~~~---~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
|. +.+.|++++...+... ..... ...|.|..... + |.|+|.+.|..+.......+.+
T Consensus 161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 64 7999999665233211 11111 23577776664 4 9999999998877655555544
No 351
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.67 E-value=1.4e-16 Score=131.43 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=97.8
Q ss_pred cceeeEEEEEEEecCCC---CCeEEEeeCCeecCccccccEEEeecCeEEEee---cCCCC---CeEEEEEEEcCCCCcc
Q psy535 69 PFRLQGVVQCHIKANPT---FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR---VNQNH---QGRYTCTPYNAHGTQG 139 (460)
Q Consensus 69 ~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~d---~G~y~C~~~~~~g~~~ 139 (460)
.+|++++|.|.+.+.++ ...|+|+|++.++............++.|.+.. +...| +|.|+|.|.|..+...
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~ 95 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 95 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence 68999999999998753 348999999987753221122233445555543 33444 9999999999877643
Q ss_pred eeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCccc---EE-Eecce---
Q psy535 140 SSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNR---VK-IVGGN--- 208 (460)
Q Consensus 140 ~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~---~~-~~~~~--- 208 (460)
....+.+ .+..+|.+.+.+.....+ .|..++|.|.+ .| .|. +.+.|++++. .+.... .. ..+++
T Consensus 96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~---~g~~P~~~~v~W~k~g~-~~~~~~~~~~~~~~~gt~~~ 170 (207)
T 1l6x_A 96 IEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLV---KGFYPSDIAVEWESNGQ-PENNYKTTPPVLDSDGSFFL 170 (207)
T ss_dssp EEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEE---EEEBSSCCEEEEEETTE-EECCEEECCCEECTTSCEEE
T ss_pred eEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEE---eCeECCCeEEEEEECCe-eccCccccCceECCCCCEEE
Confidence 3333332 345677766554443223 45569999999 45 454 4999999543 332211 11 12233
Q ss_pred ---EEEccccceeceEEEEEEecccc
Q psy535 209 ---ITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 209 ---l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
|.+......|.|.|+|.|.|...
T Consensus 171 ~s~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 171 YSKLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEEEECHHHcCCCCEEEEEEEcCCc
Confidence 33333334568999999998754
No 352
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.67 E-value=9.4e-17 Score=133.82 Aligned_cols=131 Identities=16% Similarity=0.196 Sum_probs=90.6
Q ss_pred ccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCC----CcceeeeEEEEe----cCCeeEEcceeeeecceeeEEE
Q psy535 8 LETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIG----EPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVV 76 (460)
Q Consensus 8 ~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l 76 (460)
..+|+.+... ++|.|.+++.+|+|.|+|.|.+..| ......+.|.|. .+|.+...+.......|+.++|
T Consensus 62 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L 141 (218)
T 3s96_B 62 IPDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATL 141 (218)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEE
T ss_pred cccceEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEE
Confidence 3468887653 3799999999999999999999775 122445788887 4566665554444556788999
Q ss_pred EEEEecC-CCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 77 QCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 77 ~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
.|.+.+. |++..|+|+++|..+............+ +.|.|.....+|+|.|+|.|.|..+..
T Consensus 142 ~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~ 210 (218)
T 3s96_B 142 VCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTV 210 (218)
T ss_dssp EEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEE
T ss_pred EEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcc
Confidence 9999984 4443899999999885421111111112 247788888889999999999977543
No 353
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.67 E-value=7.5e-16 Score=133.13 Aligned_cols=127 Identities=12% Similarity=0.192 Sum_probs=91.6
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC-------------e-eEEcceeeeecc
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA-------------K-VTFTPTVQYLPF 70 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------------~-~~~~~~~~~~~~ 70 (460)
.++|+.+..++ +|.|.+++.+|+|.|+|.|.|..+........|.|..++ . +...|....+.+
T Consensus 69 ~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~ 148 (276)
T 3auv_A 69 VPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQP 148 (276)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECT
T ss_pred CCCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecC
Confidence 35788887654 899999999999999999999765433445677776543 2 234456678889
Q ss_pred eeeEEEEEEEecCCC-CCeEEEeeCC--eecC---------------ccccccEEEeec-----CeEEEeecCCCCCeEE
Q psy535 71 RLQGVVQCHIKANPT-FQYVTWTKDK--RLLE---------------PYQTKDIVVMQN-----GSLLFTRVNQNHQGRY 127 (460)
Q Consensus 71 g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y 127 (460)
|++++|.|.+.+.++ .+.+.|+|++ ..+. .....++....+ ..|.|.+++.+|+|.|
T Consensus 149 G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y 228 (276)
T 3auv_A 149 GGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVY 228 (276)
T ss_dssp TCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred CCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEE
Confidence 999999999998763 3589999963 2110 111235544433 2799999999999999
Q ss_pred EEEEEcC
Q psy535 128 TCTPYNA 134 (460)
Q Consensus 128 ~C~~~~~ 134 (460)
+|.|.|.
T Consensus 229 ~C~a~n~ 235 (276)
T 3auv_A 229 YCARFVF 235 (276)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 9999997
No 354
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.67 E-value=3.6e-16 Score=112.94 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=74.3
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~ 131 (460)
.||.|...|....+.+|+++.|.|.+.|.|.+ .|+|+|+|..+.. ..++.+..++ +|.|.++..+|+|.|+|.|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p-~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 88 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQLAA--SERLSFPADGAEHGLLLTAALPTDAGVYVCRA 88 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCC--CSSEECCEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCC-EEEEEECcccccc--eeeEEEeecCceEEEEEecCChhhCEEEEEEE
Confidence 46788888888999999999999999998876 7999999999874 3444444333 6999999999999999999
Q ss_pred EcCCCCcceeeEEEEEeeCCC
Q psy535 132 YNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v~v~~~p 152 (460)
.|..|.... .+.|.|..+|
T Consensus 89 ~N~~G~~~~--~~~l~V~~pP 107 (107)
T 3knb_B 89 RNAAGEAYA--AAAVTVLEPP 107 (107)
T ss_dssp EETTEEEEE--EEEEEEEC--
T ss_pred EECCCEEEE--EEEEEEEcCC
Confidence 999997654 4555566554
No 355
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.1e-16 Score=112.71 Aligned_cols=98 Identities=18% Similarity=0.326 Sum_probs=78.5
Q ss_pred ccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535 338 TKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416 (460)
Q Consensus 338 ~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (460)
+...+|.+|.++++...+ ++|.|+|++|...++.|.+|.|+|+..+.. ....|..+.
T Consensus 3 T~~~~P~~p~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~----------------------~~~~~~~~~ 60 (109)
T 2e7h_A 3 SGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAE----------------------GPSSVRFLK 60 (109)
T ss_dssp SSCCSSCCCCCCEEEEEETTEEEEECCCCCCSSSCCCEEEEEEEETTCC----------------------STTTSEEEE
T ss_pred CCCCCCCCCCccEEEecCCCEEEEEeCCCCCCCCcEeEEEEEEEECCCC----------------------CCceeEEEc
Confidence 445678899999998877 699999999987788999999999976520 000111111
Q ss_pred cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus 61 ---~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 101 (109)
T 2e7h_A 61 ---TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ 101 (109)
T ss_dssp ---ESSSEEEEESCCTTSCEEEEEEEECSSCBCCCCSCEECCCC
T ss_pred ---cCCCEEEECCCCCCCeEEEEEEEEeCCccCCCCCCEEEEcC
Confidence 24568999999999999999999999999999999999884
No 356
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.66 E-value=4.7e-16 Score=116.33 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=87.5
Q ss_pred cCCCCCCCCCcEEEEccCC------CCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCC
Q psy535 323 NELGDGMLSNIVVVKTKGP------KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396 (460)
Q Consensus 323 n~~G~~~~s~~~~~~~~~~------~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~ 396 (460)
+..|.|.+|..+.+++... +|.+|.++++...++++.|+|++|...++.|.+|.|+|+. +..
T Consensus 2 t~~G~g~~S~~~~~~T~~~~~~~~~~P~~P~~l~~~~~~~sv~l~W~~P~~~~g~i~~Y~v~y~~-~~~----------- 69 (126)
T 1x5i_A 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGI-GSP----------- 69 (126)
T ss_dssp CSCCCCCCCCCCCSCCCCTTSBCSSCCCSCSEEEEEEETTEEEEEEECCSCTTBCCCEEEEEECS-SCG-----------
T ss_pred CCCccCCCCCCEEeECccccCccCCCCCCCCeeEEEecCCEEEEEEcCCCCCCCCEeEEEEEEEc-CCC-----------
Confidence 3578888999999988886 8999999999988789999999998778899999999983 210
Q ss_pred cccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456 (460)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~ 456 (460)
...+. ......++++|.+|.|++.|.|+|+|+|..|.|+++....
T Consensus 70 ------------~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~ 114 (126)
T 1x5i_A 70 ------------HAQTI---KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESA 114 (126)
T ss_dssp ------------GGEEE---ECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCCCE
T ss_pred ------------CceEE---EeCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceeeEE
Confidence 00111 1235678999999999999999999999999999887543
No 357
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.66 E-value=2.7e-15 Score=130.60 Aligned_cols=165 Identities=16% Similarity=0.227 Sum_probs=108.6
Q ss_pred cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~ 118 (460)
.|....+.+|++++|.|.+.+.+. .+.+.|+|.. ..+. .....++.... ..+|.|.+
T Consensus 28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 455677889999999999987652 3479999952 1110 00123333332 23699999
Q ss_pred cCCCCCeEEEEEEEcCC-CCc--ceeeEEEEEeeC----------------CCceeeCCCcccccCCCCeEEEEeeeecc
Q psy535 119 VNQNHQGRYTCTPYNAH-GTQ--GSSGQMEVLVRK----------------PPAFTIKPEAMYQRKVGESVDMHCEAQEA 179 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~-g~~--~~~~~~~v~v~~----------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~ 179 (460)
++.+|+|.|+|.+.+.. |.. .......|.|.. ++.+...|... .+..|+.++|.|.+
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~--- 183 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSL-AVSAGEKVTMSCKS--- 183 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEE-EEETTSCEEEEEEE---
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEE-EEcCCCcEEEEEEc---
Confidence 99999999999998864 211 111223455544 23344444443 67899999999998
Q ss_pred CCCCCC------eeEEEcCC-CccCC-------------cccEEEe----cceEEEccccceeceEEEEEEeccc
Q psy535 180 EGTQKP------TITWQRRD-GVALP-------------KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 180 ~~~p~~------~~~W~~~~-~~~~~-------------~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
.+.+.+ .+.|++++ +.... ..++... ..+|.|.++..+|+|.|.|.+.|..
T Consensus 184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 666665 89999853 11110 2233322 2369999999999999999999854
No 358
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.66 E-value=5e-14 Score=114.29 Aligned_cols=158 Identities=15% Similarity=0.241 Sum_probs=113.2
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCCC---CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANPT---FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+.+.|....+..|+.++|.|.+.+..+ +.+++|+|||.++.. ..+.|.|..+...|+|.|+|.+.+.
T Consensus 4 tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG---------aT~tLti~s~t~sdSG~YqCvVTDa 74 (304)
T 3shs_A 4 TVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN---------NTATLTVADATSENAGSYKVTVQDT 74 (304)
T ss_dssp EEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEEET
T ss_pred EEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC---------CcceEEeeeccccCCeEEEEEEEEC
Confidence 3456788888899999999999977643 347999999988752 2346899999999999999999998
Q ss_pred CCCcceeeEEEEEeeCCCceeeC-CCcccccCCCCeEEEEeeeeccCCCC-----CCeeEEEcCCCccCCcccEEEecce
Q psy535 135 HGTQGSSGQMEVLVRKPPAFTIK-PEAMYQRKVGESVDMHCEAQEAEGTQ-----KPTITWQRRDGVALPKNRVKIVGGN 208 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~ 208 (460)
.|....+..+.|.....+.+.+. |... .+..+..+.|.+.+....|.+ ...+.|++++. .+. ....
T Consensus 75 ~Gcs~tSs~VtVT~~a~l~i~it~P~s~-~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt-~Is------gAq~ 146 (304)
T 3shs_A 75 DTMTSVESEVFLMEEAELIVNITEPQHF-YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGED-VID------TTQD 146 (304)
T ss_dssp TTCCEEECCCEEECBCCEEEEESSCSEE-EECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTE-EEE------SSSE
T ss_pred CCCeeeeeeEEEeccCceeEEecCCCce-eccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCe-Ecc------Cccc
Confidence 88766665555554333333332 3333 456677888888762224555 46999999543 221 2235
Q ss_pred EEEccccceeceEEEEEEecccce
Q psy535 209 ITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 209 l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
+.+......++|.|+|.+.|..+.
T Consensus 147 lT~sS~TateaG~YtV~VTn~~~~ 170 (304)
T 3shs_A 147 ITIQEFTADKNGVYTVKVWGESED 170 (304)
T ss_dssp EEECSCCGGGCEEEEEEEESSSGG
T ss_pred cceeeEEecCCeEEEEEEEcCCCC
Confidence 677778888999999999998763
No 359
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.66 E-value=2.3e-16 Score=131.54 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=89.8
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC---cceeeeEEEEecC----CeeEEcceeeeecceeeEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE---PQAAQAYLNVEFP----AKVTFTPTVQYLPFRLQGV 75 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~ 75 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.|.+..+. .....+.|.|... |.+...+....+.+|+.++
T Consensus 64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~ 143 (219)
T 1c1e_H 64 FKGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVT 143 (219)
T ss_dssp GCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEE
T ss_pred cCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEE
Confidence 4579998763 49999999999999999999997632 1224567777652 5554444334466899999
Q ss_pred EEEEEec-CCCCCeEEEeeCCeecCccccccEEE----eecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 76 VQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVV----MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 76 l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
|.|.+.+ .|.+..|+|++++..+.......... ...+.|.|. ....|.|.|+|.|.|..+..
T Consensus 144 L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~-~~~~d~g~Y~C~a~n~~~~~ 210 (219)
T 1c1e_H 144 LGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVP-SSPRPSETVTCNVAHPASST 210 (219)
T ss_dssp EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEE-SSSTTTSCCEEEEEEGGGTE
T ss_pred EEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEe-cccCCCCEEEEEEEeCCCCc
Confidence 9999998 66554899999998753211111110 112358884 44446699999999977654
No 360
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.66 E-value=1e-15 Score=130.11 Aligned_cols=127 Identities=14% Similarity=0.214 Sum_probs=93.2
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEecC---------------CeeEEcceee
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEFP---------------AKVTFTPTVQ 66 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~---------------p~~~~~~~~~ 66 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.|.|..+. .....+.|.|..+ +.+...|...
T Consensus 66 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (247)
T 2ghw_B 66 VKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATL 145 (247)
T ss_dssp TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEE
T ss_pred ccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEE
Confidence 4579998764 38999999999999999999997322 1133457777643 3355567777
Q ss_pred eecceeeEEEEEEEecCCCCCeEEEee--CCeecC----------ccccccEEEee---cCeEEEeecCCCCCeEEEEEE
Q psy535 67 YLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE----------PYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~----------~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~ 131 (460)
.+.+|++++|.|.+.+.+.+ .+.|+| ++..+. .....++.... ..+|.|.+++.+|+|.|+|.|
T Consensus 146 ~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 224 (247)
T 2ghw_B 146 SLSPGERATLSCRASQSVRS-NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQ 224 (247)
T ss_dssp EECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred EecCCCcEEEEEEeCCCccc-eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEE
Confidence 88999999999999998766 799999 555431 01123333322 235999999999999999999
Q ss_pred EcCC
Q psy535 132 YNAH 135 (460)
Q Consensus 132 ~~~~ 135 (460)
.|..
T Consensus 225 ~~~~ 228 (247)
T 2ghw_B 225 RSNW 228 (247)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 8753
No 361
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.66 E-value=8.2e-16 Score=131.43 Aligned_cols=128 Identities=18% Similarity=0.245 Sum_probs=93.3
Q ss_pred ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeC-----------CCCcceeeeEEEEec---------------C
Q psy535 8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNG-----------IGEPQAAQAYLNVEF---------------P 56 (460)
Q Consensus 8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~---------------~ 56 (460)
..+|+.+..++ +|.|.+++.+|+|.|.|.+.+. ..........|.|.. +
T Consensus 70 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~ 149 (256)
T 3juy_B 70 FQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSE 149 (256)
T ss_dssp TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCC
T ss_pred CcceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcce
Confidence 45799998543 6999999999999999999986 122224456788875 3
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCc----------cccccEEEeecC---eEEEeecCC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEP----------YQTKDIVVMQNG---SLLFTRVNQ 121 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~----------~~~~~~~~~~~~---~l~i~~~~~ 121 (460)
+.+...|....+.+|++++|.|.+.+.+..+.+.|+|. +..+.. ....++....++ +|.|.+++.
T Consensus 150 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 229 (256)
T 3juy_B 150 IVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEP 229 (256)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred eEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCH
Confidence 45667788888999999999999998765357999983 222110 012333333222 599999999
Q ss_pred CCCeEEEEEEEcCC
Q psy535 122 NHQGRYTCTPYNAH 135 (460)
Q Consensus 122 ~d~G~y~C~~~~~~ 135 (460)
+|+|.|+|.|.|..
T Consensus 230 ~DsG~Y~C~~~~~~ 243 (256)
T 3juy_B 230 EDFALYYCQVYGAS 243 (256)
T ss_dssp GGCSEEEEEECCSS
T ss_pred hHCEEEEEEEeeCC
Confidence 99999999998753
No 362
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.66 E-value=1e-15 Score=129.95 Aligned_cols=170 Identities=12% Similarity=0.162 Sum_probs=105.9
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec------------CccccccEEEee----cCeEEEeecC
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL------------EPYQTKDIVVMQ----NGSLLFTRVN 120 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~----~~~l~i~~~~ 120 (460)
+...|....+.+|++++|.|.+.+.+.+ .+.|+|. +... ......++.... +.+|.|.+++
T Consensus 4 v~~~p~~v~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~ 82 (245)
T 3nfj_J 4 IHQWPATLVQPVGSPLSLECTVEGTSNP-NLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLL 82 (245)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESCSSC-EEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCC
T ss_pred eeCCCceEEecCCCCEEEEEEecCCCCc-eEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCC
Confidence 4456777888999999999999987655 7999982 2110 011112333332 2369999999
Q ss_pred CCCCeEEEEEEEcCCC----CcceeeEEEEEeeC------CCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeE
Q psy535 121 QNHQGRYTCTPYNAHG----TQGSSGQMEVLVRK------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TIT 188 (460)
Q Consensus 121 ~~d~G~y~C~~~~~~g----~~~~~~~~~v~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~ 188 (460)
.+|+|.|+|.+.+..| .........|.|.. +|.+.+.+.....+..|+.++|.|.+ .+ .|.+ .+.
T Consensus 83 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~---~g~~p~~~~v~ 159 (245)
T 3nfj_J 83 LSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFFPDHVELS 159 (245)
T ss_dssp GGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEE---EEEBSSCEEEE
T ss_pred hhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEE---ccCcCCCEEEE
Confidence 9999999999998322 11122223444443 55554433222235569999999998 45 4444 789
Q ss_pred EEcCCCccCCcccEE----------------EecceEEEcccccee-ceEEEEEEeccccee
Q psy535 189 WQRRDGVALPKNRVK----------------IVGGNITIEGLRRVD-FGYYECVVSNEVATI 233 (460)
Q Consensus 189 W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~~ 233 (460)
|++++ ..+...... .....|.|......| .|.|+|.+.|.....
T Consensus 160 W~k~g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~ 220 (245)
T 3nfj_J 160 WWVNG-KEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (245)
T ss_dssp EEETT-EEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCS
T ss_pred EEECC-EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCC
Confidence 99954 343221110 112346666666666 669999999875543
No 363
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.66 E-value=1.1e-15 Score=130.30 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=90.5
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC-------------------CeeEEccee
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-------------------AKVTFTPTV 65 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~ 65 (460)
..+|+.+..++ +|.|.+++.+|+|.|+|.+.|..+........|.|..+ +.+...+..
T Consensus 61 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (250)
T 3esu_F 61 VPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGP 140 (250)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCC
T ss_pred CCCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCc
Confidence 45788776654 89999999999999999999876654345567777653 223345566
Q ss_pred eeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecCc---------------cccccEEEeecC-----eEEEeecCCC
Q psy535 66 QYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLEP---------------YQTKDIVVMQNG-----SLLFTRVNQN 122 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~~---------------~~~~~~~~~~~~-----~l~i~~~~~~ 122 (460)
..+.+|++++|.|.+.+.+ +.+.+.|+|+ +..+.. ....++....++ +|.|.+++.+
T Consensus 141 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 220 (250)
T 3esu_F 141 ELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSV 220 (250)
T ss_dssp EEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred eEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcc
Confidence 7788999999999998865 2347999997 433211 112344444332 6999999999
Q ss_pred CCeEEEEEEEc
Q psy535 123 HQGRYTCTPYN 133 (460)
Q Consensus 123 d~G~y~C~~~~ 133 (460)
|+|.|+|.+.+
T Consensus 221 DsG~Y~C~~~~ 231 (250)
T 3esu_F 221 DSAVYFCARSG 231 (250)
T ss_dssp GCEEEEEEEEC
T ss_pred cCEEEEEEEec
Confidence 99999999986
No 364
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.66 E-value=1.2e-16 Score=133.84 Aligned_cols=191 Identities=16% Similarity=0.181 Sum_probs=102.6
Q ss_pred eeEEEEEEeCCCCcceeeeEEEEecCCee-EEcceeee-ecceeeEEEEEEEecCC---CCCeEEEeeCCeecCcccccc
Q psy535 31 GLYMCEVSNGIGEPQAAQAYLNVEFPAKV-TFTPTVQY-LPFRLQGVVQCHIKANP---TFQYVTWTKDKRLLEPYQTKD 105 (460)
Q Consensus 31 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~ 105 (460)
|.|.|.+.+..+.. ... .+..+|.+ ...|.... +..|+.++|.|.+.+.+ .+..|+|+|+|..+.......
T Consensus 1 ~~~~~~~~~~~~~c-~~~---~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~ 76 (240)
T 4acp_A 1 GTKSCDKTHTCPPC-PAP---ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP 76 (240)
T ss_dssp --------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC
T ss_pred CceeeeeeecCCCC-Ccc---ccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc
Confidence 78999999865531 111 11223443 44555444 55699999999999975 345799999999874321111
Q ss_pred EEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeee
Q psy535 106 IVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177 (460)
Q Consensus 106 ~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~ 177 (460)
.....+ +.|.|.....+|.|.|+|+|.+..+.......+.+ .+..+|.+.+.+.... ...|+.++|.|.+
T Consensus 77 ~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~-~~~g~~~~L~C~~- 154 (240)
T 4acp_A 77 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-ELTKNQVSLTCLV- 154 (240)
T ss_dssp CEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGG-GGGSSEEEEEEEE-
T ss_pred ceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChH-HhcCCceEEEEEE-
Confidence 111112 34777777777899999999998764334444432 2346777776655442 2348899999999
Q ss_pred ccCC-CCCC-eeEEEcCCCccCCccc---EE-Eecc------eEEEccccceeceEEEEEEeccc
Q psy535 178 EAEG-TQKP-TITWQRRDGVALPKNR---VK-IVGG------NITIEGLRRVDFGYYECVVSNEV 230 (460)
Q Consensus 178 ~~~~-~p~~-~~~W~~~~~~~~~~~~---~~-~~~~------~l~i~~~~~~~~g~y~C~a~n~~ 230 (460)
.+ .|.+ .+.|++++. .+.... .. ..++ .|.+......+.+.|+|.+.+..
T Consensus 155 --~gf~P~~i~v~W~k~g~-~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~ 216 (240)
T 4acp_A 155 --KGFYPSDIAVEWESNGQ-PENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 216 (240)
T ss_dssp --EEEBSSCCEEEEEETTE-ECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred --eEEeCCCcEEEEEECCE-ECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence 45 4554 899999554 332211 00 1122 34444444456789999999864
No 365
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.66 E-value=1.6e-15 Score=126.85 Aligned_cols=165 Identities=13% Similarity=0.172 Sum_probs=105.6
Q ss_pred ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFTRV 119 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~~ 119 (460)
|....+.+|++++|.|.+.+.+ ....+.|+|.. ..+. .....++.... +.+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence 4456788999999999998765 13479999842 2110 01124555443 247999999
Q ss_pred CCCCCeEEEEEEEcCCC-----Cc-ceeeEEEEEeeC----CCceee-CCCcccccCCCCeEEEEeeeeccCCCCCC-ee
Q psy535 120 NQNHQGRYTCTPYNAHG-----TQ-GSSGQMEVLVRK----PPAFTI-KPEAMYQRKVGESVDMHCEAQEAEGTQKP-TI 187 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g-----~~-~~~~~~~v~v~~----~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~ 187 (460)
+.+|+|.|+|.+.+..| .. .......|.|.. +|.+.. .+.. .+..|+.++|.|.+. ...|.+ .+
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~--~~~~g~~v~L~C~~~--g~~P~p~~v 162 (225)
T 1op3_H 87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS--KSTSGGTAALGCLVK--DYFPEPVTV 162 (225)
T ss_dssp CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT--TCCCCCEEEEEEEEE--EEBSSCCEE
T ss_pred ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc--cccCCCcEEEEEEEE--eEECCCeEE
Confidence 99999999999998764 10 111223444443 344433 3332 356799999999993 233766 99
Q ss_pred EEEcCCCccCC---cccEE------EecceEEEccccceeceEEEEEEeccccee
Q psy535 188 TWQRRDGVALP---KNRVK------IVGGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 188 ~W~~~~~~~~~---~~~~~------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
.|++++.. +. ..... .....|.|......| |.|+|.|.|..+..
T Consensus 163 ~W~~~~~~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 215 (225)
T 1op3_H 163 SWNSGALT-SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 215 (225)
T ss_dssp ECCTTSCC-TTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred EEecCCCc-CCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence 99985543 21 01111 112357888887778 99999999976543
No 366
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.66 E-value=2.8e-16 Score=117.36 Aligned_cols=109 Identities=20% Similarity=0.401 Sum_probs=82.5
Q ss_pred CCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecC
Q psy535 330 LSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQG 408 (460)
Q Consensus 330 ~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (460)
.+..+.......+|.+|.++++.... +++.|+|.++.+++++|++|.|+|+.... .+
T Consensus 5 ~s~~~~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~----------------------~~ 62 (124)
T 1wis_A 5 SSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVV----------------------GE 62 (124)
T ss_dssp CSCCCCSCCCCCCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCC----------------------ST
T ss_pred ccccccccCCCCCCccCCCCEEEEecCCEEEEEEECCCCCCCcccEEEEEEEECCC----------------------CC
Confidence 34444455555679999999998876 69999999998888899999999986310 01
Q ss_pred ceeeeeecc--CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee-EeecC
Q psy535 409 NKDWLPIPV--TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTK 460 (460)
Q Consensus 409 ~~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~-~~~T~ 460 (460)
...|..+.. .....+.++|.+|.|++.|.|||+|+|..|.|++|... .++|.
T Consensus 63 ~~~w~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~~T~ 117 (124)
T 1wis_A 63 GEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL 117 (124)
T ss_dssp TSCCEEEEEEESCTTCSEEEECSCCTTSEECCCCEEECSSCBCCCCCCCCCEECC
T ss_pred CCCCeEeeeEccCCCceEEEeCCCCCCCEEEEEEEEEECCccCCCcCCccceEcC
Confidence 123433321 23567899999999999999999999999999999864 46663
No 367
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=115.65 Aligned_cols=108 Identities=19% Similarity=0.371 Sum_probs=84.8
Q ss_pred CCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY 404 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (460)
|.+..+..+.+.+...+|.+|.++++.... +++.|+|++|... +.|.+|.|+|+..+.
T Consensus 1 Gss~~~~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~-g~i~~Y~v~~~~~~~-------------------- 59 (118)
T 2yrz_A 1 GSSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCE-RPLQGYSVEYQLLNG-------------------- 59 (118)
T ss_dssp CCCCCCSCCTTSSSCSCCCCCCCCEECCCBTTEEEEECCCCCCS-SCEEEEEEEEEBSSS--------------------
T ss_pred CCCCCCCcceeecCCCCCCCCCceEEEeCCCCEEEEEeCCCCCC-CCccEEEEEEEECCC--------------------
Confidence 334455566677788889999999998776 6999999999875 689999999997442
Q ss_pred eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCc-eeEeec
Q psy535 405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN-IVVVKT 459 (460)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~-~~~~~T 459 (460)
..|..+.......+.+.|.+|.|++.|.|+|+|+|..|.|++|+ .+.++|
T Consensus 60 -----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~t 110 (118)
T 2yrz_A 60 -----GELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES 110 (118)
T ss_dssp -----CCEEEEEESCTTCCEEEEESCCTTCEEEEEEEEEESSCEEEEEEEEEECCC
T ss_pred -----CceEEEEcCCCCcCEEEeCCCCCCCEEEEEEEEEcCCcCCCCcCCceEeCC
Confidence 12333333345678999999999999999999999999999998 555554
No 368
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.65 E-value=1.2e-15 Score=112.90 Aligned_cols=104 Identities=29% Similarity=0.401 Sum_probs=84.3
Q ss_pred CCCCcEEEEcc--CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccce
Q psy535 329 MLSNIVVVKTK--GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405 (460)
Q Consensus 329 ~~s~~~~~~~~--~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (460)
..|..+.+++. ..+|.+|.++++...+ +++.|+|++|...++.+.+|.|+|+..+...
T Consensus 2 ~~S~~~~~~T~~~~~~P~~P~~l~~~~~~~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~------------------- 62 (116)
T 1x5g_A 2 SSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDK------------------- 62 (116)
T ss_dssp CCCCCCCCSSCCCSSCCCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCC-------------------
T ss_pred CCccCeEEEcCCCCCCCcCCCccEEEecCCCEEEEEEeCCCCCCCcccEEEEEEEECCCCc-------------------
Confidence 45667777773 3568999999998876 6999999999877889999999999765311
Q ss_pred ecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
|..+ ....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus 63 ------~~~~---~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 108 (116)
T 1x5g_A 63 ------EQDV---DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTL 108 (116)
T ss_dssp ------CCCE---EECSSEEEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEECC
T ss_pred ------cEEE---ecCCceEEEcCCCCCCEEEEEEEEEcCCCcCCCCCCEEEECC
Confidence 1111 124678999999999999999999999999999999999884
No 369
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=131.76 Aligned_cols=171 Identities=13% Similarity=0.148 Sum_probs=106.7
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC------------c--cccccEEEee----cCeEEE
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE------------P--YQTKDIVVMQ----NGSLLF 116 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~------------~--~~~~~~~~~~----~~~l~i 116 (460)
+.+...|....+.+|++++|.|.+.. +. ..+.|+| .+.... . ....++.... +.+|.|
T Consensus 27 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 27 AGVSQTPSNKVTEKGKYVELRCDPIS-GH-TALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp SSCBCCCSEEEEETTCCEEEEEBCBT-TC-CEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred ceeEeCCCEEEecCCCCEEEEEEeCC-CC-ceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 34556677788899999999999863 43 4799999 222110 0 0014454443 347999
Q ss_pred eecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC------CCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeE
Q psy535 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TIT 188 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~ 188 (460)
.+++.+|+|.|+|.+.+..+.........|.|.. +|.+.+.+.....+..|+.++|.|.+ .+. |.+ .+.
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~---~g~~p~~~~v~ 181 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVELS 181 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE---EEEBSSCEEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEE---CcccCCCeEEE
Confidence 9999999999999998742222222333444443 55544433222245569999999999 453 434 899
Q ss_pred EEcCCCccCCcccE---------------EEecceEEEcccccee-ceEEEEEEecccce
Q psy535 189 WQRRDGVALPKNRV---------------KIVGGNITIEGLRRVD-FGYYECVVSNEVAT 232 (460)
Q Consensus 189 W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~ 232 (460)
|++++..+...... ......|.|......| .|.|+|.+.|....
T Consensus 182 W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 182 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp EEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 99954433221110 0112345666666666 89999999987544
No 370
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1
Probab=99.65 E-value=4.1e-16 Score=112.68 Aligned_cols=97 Identities=24% Similarity=0.378 Sum_probs=76.4
Q ss_pred CCCCCCCcceEEEeecceEEEEecCCCCCCcc-ceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeec
Q psy535 340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASL-IQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416 (460)
Q Consensus 340 ~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~-i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (460)
+.+|.+|.++.+...++++.|+|++|...++. |.+|.|+|+..+. |.. .|..+.
T Consensus 4 ~~~P~~P~~~~~~~~~~~v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~-----------------------~~~~~~ 60 (105)
T 2haz_A 4 MDTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS-----------------------KWYDAK 60 (105)
T ss_dssp CCCCCCCEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEE-----------------------EEEEHH
T ss_pred CCCCcCCCCCEEEEcCCcEEEEEcCCcccCCccccEEEEEEEECCCCCCcc-----------------------ceEEcc
Confidence 45688899999988875699999999766665 9999999998653 211 011111
Q ss_pred cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
. ....+.++|.+|.|++.|.|+|+|+|..|.|++|+.+.|+|.
T Consensus 61 ~-~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~~T~ 103 (105)
T 2haz_A 61 E-ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103 (105)
T ss_dssp H-HHHHSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECC
T ss_pred c-cCCccEEEECCCCCCCEEEEEEEEEcCCccCCCcCCEeeEEe
Confidence 1 114578999999999999999999999999999999999984
No 371
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.65 E-value=9.7e-16 Score=114.09 Aligned_cols=100 Identities=20% Similarity=0.361 Sum_probs=77.6
Q ss_pred EEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee
Q psy535 336 VKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414 (460)
Q Consensus 336 ~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (460)
......+|.+|.++.+...+ +++.|+|+++.+++++|.+|.|+|+..+. ...|..
T Consensus 11 ~~~~~~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~------------------------~~~w~~ 66 (121)
T 1x4z_A 11 DHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKK------------------------VGDWIL 66 (121)
T ss_dssp CSSSCCCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSS------------------------CCCCEE
T ss_pred ccCcCCCCccCCCCEEEEccCCEEEEEEECCCCCCCcceEEEEEEEECCC------------------------CCceEE
Confidence 33445569999999998876 69999999877777899999999997431 112333
Q ss_pred ecc-CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE-eec
Q psy535 415 IPV-TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKT 459 (460)
Q Consensus 415 ~~~-~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~-~~T 459 (460)
+.. .....+.++|.+|.|++.|.|||+|+|..|.|++|.... ++|
T Consensus 67 ~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~v~~ 113 (121)
T 1x4z_A 67 ATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV 113 (121)
T ss_dssp EEEEECTTCCEEEEESCCTTCEEEEEEEEEETTEECCCCCCCCCEEC
T ss_pred eecccCCCcCEEEECCCCCCCEEEEEEEEEcCCCcCCCcCCCCCEEc
Confidence 221 135678999999999999999999999999999998764 444
No 372
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}
Probab=99.65 E-value=1.4e-14 Score=118.55 Aligned_cols=181 Identities=19% Similarity=0.171 Sum_probs=108.4
Q ss_pred CCCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCCCC-----------eeeeeccCCCCceEEEccCccCcc
Q psy535 248 APYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD-----------WLPIPVTPPGSTQITINRLTPATT 314 (460)
Q Consensus 248 ~p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~l~~~~~ 314 (460)
.|.++.+... ...++++|.++......- ..|.+.+...+... .............+.+..+.....
T Consensus 3 ~~~nlsC~~~~~~~~~~C~W~~g~~~~l~t-~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~~~ 81 (206)
T 3v6o_A 3 VNINISCETDGYLTKMTCRWSTSTIQSLAE-STLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSG 81 (206)
T ss_dssp -CCCCEEEECTTSSCEEEEECCCC---------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTTSC
T ss_pred CCEEEEEEECCCCcEEEEEecCCCcCCccc-ccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhccc
Confidence 3556665444 368999999865544321 15666665433100 011111122345788888888899
Q ss_pred EEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee--cceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccc
Q psy535 315 YEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV--NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKG 391 (460)
Q Consensus 315 ~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~--~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~ 391 (460)
|.|++.|.|..|... |..+.+.... ..|.||.++.+... ..++.|+|++|.... .+..|+|+|+..+.
T Consensus 82 Y~~~V~a~N~~G~~~-s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~~~-~~l~yev~y~~~~~------- 152 (206)
T 3v6o_A 82 YTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPE-NNLQFQIRYGLSGK------- 152 (206)
T ss_dssp EEEEEEEC---CCEE-CCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC---------CEEEEEEEEESSS-------
T ss_pred EEEEEEEEcCCcccc-CCcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCCCCC-CcEEEEEEEEECCC-------
Confidence 999999999999764 5666664332 35899999998865 359999999986533 46899999997541
Q ss_pred cCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535 392 QIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455 (460)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~ 455 (460)
...|..+.........+.+.+|.|++.|.|+|+|.+..|.|.||++.
T Consensus 153 -----------------~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS 199 (206)
T 3v6o_A 153 -----------------EVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWS 199 (206)
T ss_dssp -----------------SCCCEEEEECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCC
T ss_pred -----------------CCceEEEecccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCC
Confidence 01233332222233568899999999999999999987777666653
No 373
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.65 E-value=8.9e-16 Score=111.10 Aligned_cols=93 Identities=22% Similarity=0.286 Sum_probs=76.1
Q ss_pred cCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeec
Q psy535 339 KGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416 (460)
Q Consensus 339 ~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (460)
...+|.+|.++++...+ +++.|+|++|.+++++|.+|.|+|+..+. |....
T Consensus 4 ~~~~P~~P~~~~~~~~s~~sv~l~W~~p~~~g~~i~~Y~v~~~~~~~~~~~~~--------------------------- 56 (106)
T 1x4x_A 4 GSSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICY--------------------------- 56 (106)
T ss_dssp SCCSCCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTSCCEEE---------------------------
T ss_pred CCCCcCCCCCCEEEEcCCCEEEEEEcCCCCCCCcceEEEEEEEcCCCceEEEE---------------------------
Confidence 34568999999988776 69999999998866699999999986442 11110
Q ss_pred cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
....+.+.|.+|.|++.|.|||+|+|..|.|++|+.+.++|+
T Consensus 57 --~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~g~~S~~v~~~T~ 98 (106)
T 1x4x_A 57 --CGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 98 (106)
T ss_dssp --EESCSEEEEESCCSSCEEEEEEEEECSSCCCCBCCCEEEECC
T ss_pred --eCCcceEEEcCCCCCCEEEEEEEEEcCCcCCCCcCCEEEECC
Confidence 124578999999999999999999999999999999999885
No 374
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.65 E-value=1.9e-16 Score=132.29 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=93.5
Q ss_pred cceEEEee--------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeE-EEEEE
Q psy535 9 ETRVVIKK--------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG-VVQCH 79 (460)
Q Consensus 9 ~~r~~~~~--------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~-~l~C~ 79 (460)
.+|+.+.. +++|.|.+++.+|+|.|+|.+.+.........+.|.|..+|.+...+.... .+|+.+ .|.|.
T Consensus 61 ~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~-~~g~~~~~l~C~ 139 (221)
T 3eow_R 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ-LTGEPVPMARCV 139 (221)
T ss_dssp CSSCEEESSCSSCCCCCCEEECCCSSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCC-CCSSSCCEEEEE
T ss_pred CCcEEEecccCCCCCCCceEEEccCChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcc-cCCceEEEEEEE
Confidence 67888775 569999999999999999999997633347788888888888776554444 568888 59999
Q ss_pred Ee-cCCCCCeEEEeeCCeecCcccc----ccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 80 IK-ANPTFQYVTWTKDKRLLEPYQT----KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 80 ~~-~~~~~~~v~W~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
+. +.|.+ .|+|++++........ ..-.....+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 140 ~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~ 202 (221)
T 3eow_R 140 STGGRPPA-QITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEK 202 (221)
T ss_dssp EESCSSCC-CEEEECSSSCCCCCEEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSS
T ss_pred CCCccCCC-eeEEEeCCCCCCccceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCC
Confidence 87 66665 8999987543321000 00000112359999999999999999999987664
No 375
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.65 E-value=4.6e-16 Score=113.33 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=78.7
Q ss_pred ccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535 338 TKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416 (460)
Q Consensus 338 ~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (460)
+.+.+|.+|.++++...+ ++|.|+|++|...++.|.+|+|+|+..+... . .+.
T Consensus 3 T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~-----------~------------~~~--- 56 (108)
T 2djs_A 3 SGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNE-----------F------------NSS--- 56 (108)
T ss_dssp SCCCCCCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCS-----------T------------TCE---
T ss_pred cCCCCCCCCcceEEEecCCCEEEEEECCCCCCCCeEEEEEEEEEECCCCC-----------c------------cee---
Confidence 445679999999998776 6999999999877889999999999765300 0 000
Q ss_pred cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
......+.+.|.+|.|++.|.|+|+|+|..|.|++|.++.++|+
T Consensus 57 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 100 (108)
T 2djs_A 57 MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTL 100 (108)
T ss_dssp EEEESSSEEEEESCCTTCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred EEecCccEEEEcCCCCCCEEEEEEEEEeCCEECCCCCCEEEEeC
Confidence 01135688999999999999999999999999999999999885
No 376
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C
Probab=99.65 E-value=1.2e-15 Score=109.07 Aligned_cols=94 Identities=24% Similarity=0.342 Sum_probs=72.9
Q ss_pred CCCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535 344 GPPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420 (460)
Q Consensus 344 ~~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (460)
.+|.++.+...+ +++.|+|++|.. .++.|.+|+|+|+..+.. .+..|..+.. ..
T Consensus 6 ~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~----------------------~~~~~~~~~v-~~ 62 (102)
T 3n1f_C 6 TGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSD----------------------NDSDYKRDVV-EG 62 (102)
T ss_dssp SCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCC----------------------CGGGCEEEEE-ET
T ss_pred CCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCC----------------------CCCceEEEEE-cC
Confidence 689999998776 699999999864 688999999999976430 0011221111 12
Q ss_pred CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
..+++.|.+|.|++.|.|+|+|+|..|.|++|..+.++||
T Consensus 63 ~~~~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~~~~~T~ 102 (102)
T 3n1f_C 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102 (102)
T ss_dssp TCSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECC
T ss_pred CceEEECCCCCCCCEEEEEEEEECCCcCCCCCCCEEeecC
Confidence 4567899999999999999999999999999999999997
No 377
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.65 E-value=1.3e-16 Score=130.81 Aligned_cols=123 Identities=13% Similarity=0.233 Sum_probs=85.3
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec-------------------------------CCeeEEccee
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-------------------------------PAKVTFTPTV 65 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-------------------------------~p~~~~~~~~ 65 (460)
+++|.|.+++.+|+|.|+|.+.+.. +..+.|.|.. ++.+...|.
T Consensus 48 ~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~- 122 (204)
T 1sy6_A 48 KKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY- 122 (204)
T ss_dssp CCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEEEC------------------------------------CCCC-
T ss_pred CCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEEEEeccccccccccccccccccccccccccccccccceecCCc-
Confidence 3579999999999999999975432 2234454430 111222222
Q ss_pred eeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeec-CCCCCeEEEEEEEcCCCCcceeeEE
Q psy535 66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV-NQNHQGRYTCTPYNAHGTQGSSGQM 144 (460)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~~~~g~~~~~~~~ 144 (460)
....+|++++|.|. +.|.+ .++|+|++..+............++.|.|.++ +.+|+|.|+|.|.|..|.. .+..+
T Consensus 123 ~v~~~G~~v~L~C~--g~p~p-~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~-~s~~l 198 (204)
T 1sy6_A 123 KVSISGTTVILTCP--QYPGS-EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED-ANFYL 198 (204)
T ss_dssp EEEEETTEEEEECS--CCCSS-CEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGG-SSCEE
T ss_pred eeeecCCcEEEEcC--CCCCC-ceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCc-eeEEE
Confidence 22238999999998 66655 69999999988643223333345789999999 9999999999999999853 45666
Q ss_pred EEEe
Q psy535 145 EVLV 148 (460)
Q Consensus 145 ~v~v 148 (460)
.|.+
T Consensus 199 ~l~~ 202 (204)
T 1sy6_A 199 YLRA 202 (204)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 378
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.65 E-value=1.5e-15 Score=124.59 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=82.6
Q ss_pred CCeEEEeecCCCCCeeEEEEEEeCCC----CcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeE
Q psy535 17 DGTLVINPVGSDDSGLYMCEVSNGIG----EPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYV 89 (460)
Q Consensus 17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v 89 (460)
++.|.|.+++.+|+|.|+|.+.+... ...+..+.|.|.. +|.+...|. ..+.+|++++|.|.+.+. . +.+
T Consensus 62 ~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~~-~-~~~ 138 (201)
T 1nkr_A 62 KANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRSS-Y-DMY 138 (201)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESSC-C-SEE
T ss_pred eEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCCC-C-ceE
Confidence 45899999999999999999986531 2235567788864 356666665 467899999999999863 3 479
Q ss_pred EEeeCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 90 TWTKDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 90 ~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.|+|+|..+.... ...... .++.|.|.+++ |+|.|+|.|.+.
T Consensus 139 ~w~k~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 139 HLSREGEAHERRL-PAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp EEEETTCSSCEEE-ECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred EEEECCcccCccc-ccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 9999998765321 111111 14579999998 999999999864
No 379
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.65 E-value=7.9e-16 Score=123.28 Aligned_cols=114 Identities=17% Similarity=0.288 Sum_probs=83.4
Q ss_pred cceEEE-eeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCC
Q psy535 9 ETRVVI-KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQ 87 (460)
Q Consensus 9 ~~r~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~ 87 (460)
.+|+++ ..+|+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..++. .|.. . ..+.+++|.|.+...|.+
T Consensus 59 ~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~---~P~i-~-~~~~~v~L~C~~~~gp~p- 130 (180)
T 2dru_A 59 KDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHET--EDQWKITMEVYEMVS---KPMI-Y-WECSNATLTCEVLEGTDV- 130 (180)
T ss_dssp TTTEEECTTTCCEEECSCCGGGCEEEEEEEESSS--EEEEEEEEEEECCCC---CCEE-E-EEGGGTEEEEECSSCTTC-
T ss_pred CCeEEEeCCCccEEEcCCCHHHCeEEEEEEEcCC--eEEEEEEEEEECCCC---CCEE-E-ecCCCEEEEEEeCCCCCC-
Confidence 489999 567899999999999999999998765 336678888876432 1111 1 134569999999444654
Q ss_pred eEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 88 YVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 88 ~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
.++|++++..+.. ..+.+|.+.. .+|+|.|+|.|.|..+....
T Consensus 131 ~i~W~~~~~~l~~--------~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~ 173 (180)
T 2dru_A 131 ELKLYQGKEHLRS--------LRQKTMSYQW--TNLRAPFKCKAVNRVSQESE 173 (180)
T ss_dssp EEEEEETTEEEEE--------ESSSEEEEEC--SCCSSCEEEEEEETTEEEEE
T ss_pred EEEEEECCeECcC--------CCCCEEEEEE--hhcCccEEEEEecCcCcccc
Confidence 8999999988741 2234566633 78999999999998876543
No 380
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.65 E-value=1.1e-15 Score=129.47 Aligned_cols=126 Identities=19% Similarity=0.308 Sum_probs=93.3
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC------eeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA------KVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C 78 (460)
..+|+.+..++ +|.|.+++.+|+|.|+|.|.|..+......+.|.|..++ .+...+....+.+|++++|.|
T Consensus 62 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C 141 (240)
T 1moe_A 62 IPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSC 141 (240)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEE
T ss_pred CCccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEE
Confidence 35788887654 899999999999999999999866534556788887642 234456677888999999999
Q ss_pred EEecCCC-CCeEEEeeC--CeecC---------------ccccccEEEeec-----CeEEEeecCCCCCeEEEEEEEc
Q psy535 79 HIKANPT-FQYVTWTKD--KRLLE---------------PYQTKDIVVMQN-----GSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 79 ~~~~~~~-~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.+.+.|. .+.+.|+|+ +..+. .....++....+ .+|.|.+++.+|+|.|+|.|.+
T Consensus 142 ~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 142 TASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp EEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred EEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 9998764 257999995 22210 001234444332 3699999999999999999984
No 381
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.65 E-value=4.6e-16 Score=128.74 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=91.2
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec----CCeeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.+.+.. .......|.|.. +|.+...+....+.+|+.++|.|
T Consensus 63 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C 140 (210)
T 3d9a_H 63 LKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGC 140 (210)
T ss_dssp GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEE
T ss_pred cCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEE
Confidence 4689998753 289999999999999999999863 113346777763 45554444334456899999999
Q ss_pred EEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 79 HIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 79 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
.+.+. |.+..++|++++..+......... ....+.|.|.++..+| |.|+|.|.|..|...
T Consensus 141 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 141 LVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred EEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 99987 544389999998865321112111 1122358899888877 999999999887653
No 382
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=116.43 Aligned_cols=111 Identities=29% Similarity=0.477 Sum_probs=88.6
Q ss_pred CCCCCCCcEEEEccCCCC-CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccccccc
Q psy535 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (460)
|.|.+|..+.+.+....| .+|.++++...+ +++.|+|++|...++.|.+|.|+|+..+...
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~----------------- 63 (121)
T 2dlh_A 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQH----------------- 63 (121)
T ss_dssp CCCCCCSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEECCSCCCSCEEEEEEECCSCTTSC-----------------
T ss_pred CCCCCCCCEEEECCCcCCCCCCcccEEEecCCCEEEEEECCCCCCCCcEeEEEEEEEeCCCCC-----------------
Confidence 567788888888887777 499999998766 6999999999877889999999998654200
Q ss_pred ceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...|..+ .....+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|+
T Consensus 64 -----~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 113 (121)
T 2dlh_A 64 -----VNNWMKH--NVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ 113 (121)
T ss_dssp -----TTTSCCC--CCSSCSEECCBSCCSSCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred -----ccccEEE--ecCCceEEEecCCCCCCEEEEEEEEEeCCccCCCCCCEEEECC
Confidence 0011111 1135678999999999999999999999999999999999884
No 383
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.64 E-value=7.6e-16 Score=128.87 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=90.5
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec----CCeeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.+.+..+......+.|.|.. +|.+...+....+.+|+.++|.|
T Consensus 64 ~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C 143 (227)
T 1mju_H 64 FKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGC 143 (227)
T ss_dssp GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEE
T ss_pred cCCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEE
Confidence 3579998753 49999999999999999999986322222345788864 34444333223456799999999
Q ss_pred EEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535 79 HIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 79 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
.+.+. |.+..|.|++++..+......... ....+.|.|.++..+| |.|+|.|.|..+.. .....+.+..+|
T Consensus 144 ~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~--~~~~~~~~~~~p 219 (227)
T 1mju_H 144 LVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST--KVDKKIEPRGPT 219 (227)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTE--EEEEECCCCCC-
T ss_pred EeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCc--ceEEEeCCCCCC
Confidence 99986 544489999998765321111111 1123468898888888 99999999965543 333444455554
No 384
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.64 E-value=2.5e-16 Score=132.41 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=102.8
Q ss_pred ecceeeEEEEEEEecC---CCCCeEEEeeCCeecCcccccc-E-----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 68 LPFRLQGVVQCHIKAN---PTFQYVTWTKDKRLLEPYQTKD-I-----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 68 ~~~g~~~~l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~-~-----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
+.+|++++|.|.+.+. |.+..|+|+|++..+....... . .....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 6789999999999886 5444799999886653211000 0 01122469999999999999999999987764
Q ss_pred ceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCccc---EE-EecceE-
Q psy535 139 GSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNR---VK-IVGGNI- 209 (460)
Q Consensus 139 ~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~---~~-~~~~~l- 209 (460)
.....+.+ .+..+|.+.+.+... ....|+.++|.|.+ .| .|. ..+.|+++ +..+.... .. ..++++
T Consensus 109 ~~~~~v~~~~~~~~~P~v~v~~~~~-~~~~g~~~~L~C~~---~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~dgt~~ 183 (239)
T 1i1c_A 109 PIEKSISKPEGTPRGPQVYTMAPPK-EEMTQSQVSITCMV---KGFYPPDIYTEWKMN-GQPQENYKNTPPTMDTDGSYF 183 (239)
T ss_dssp CEEEEECCCSSCCBCCEEEEECCCG-GGGGSSEEEEEEEE---EEEBSSCCEEEEEET-TEECSSEEECCCEECTTSCEE
T ss_pred CcEEEEecCCCCCcCCEEEEECCCh-HHhcCCcEEEEEEE---eeeECCCeEEEEEEC-CEECCCceecCceECCCCCEE
Confidence 33333332 345677776665543 22347899999999 45 454 48999995 44443211 11 122333
Q ss_pred -----EEccccceeceEEEEEEecccce
Q psy535 210 -----TIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 210 -----~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
.|......+.|.|+|.+.|....
T Consensus 184 ~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 184 LYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp EEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 33333334589999999987543
No 385
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.64 E-value=1.3e-15 Score=128.80 Aligned_cols=127 Identities=12% Similarity=0.175 Sum_probs=90.9
Q ss_pred ccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCc----ceeeeEEEEecCC------------eeEEcceeee
Q psy535 8 LETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEP----QAAQAYLNVEFPA------------KVTFTPTVQY 67 (460)
Q Consensus 8 ~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p------------~~~~~~~~~~ 67 (460)
..+|+.+.. +++|.|.+++.+|+|.|+|.|.+..+.. ......|.|...+ .+...|....
T Consensus 59 ~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~ 138 (238)
T 2p1y_A 59 IPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLT 138 (238)
T ss_dssp SCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEE
T ss_pred ccceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEE
Confidence 357888864 2489999999999999999999876521 1234577776543 4566677788
Q ss_pred ecceeeEEEEEEEecCCCCCeEEEeeCCe--ecC----------ccccccEEEee-----cCeEEEeecCCCCCeEEEEE
Q psy535 68 LPFRLQGVVQCHIKANPTFQYVTWTKDKR--LLE----------PYQTKDIVVMQ-----NGSLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 68 ~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~~----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~ 130 (460)
+.+|++++|.|.+.+.|.+ .+.|+|++. ... .....++.... ..+|.|.+++.+|+|.|+|.
T Consensus 139 v~~G~~v~L~C~~~~~p~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 217 (238)
T 2p1y_A 139 VWEGETAILNCSYENSAFD-YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCA 217 (238)
T ss_dssp EETTSCEEEEEECCCTTCC-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEE
T ss_pred EeCCCeEEEEEEEecCCCC-cEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEE
Confidence 8999999999999988765 899999641 110 00123443331 24799999999999999999
Q ss_pred EEcCC
Q psy535 131 PYNAH 135 (460)
Q Consensus 131 ~~~~~ 135 (460)
|.|..
T Consensus 218 a~n~~ 222 (238)
T 2p1y_A 218 AIDTN 222 (238)
T ss_dssp EEETT
T ss_pred EeeCC
Confidence 99873
No 386
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.64 E-value=5.6e-16 Score=115.09 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=86.8
Q ss_pred CCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY 404 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (460)
|.|.+|..+.+++...+|.+|.++++...+ +++.|+|++|...++.|.+|.|+|+..+...
T Consensus 1 G~g~~S~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~------------------ 62 (119)
T 1wfn_A 1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTN------------------ 62 (119)
T ss_dssp CCCCCSCCCSCCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGG------------------
T ss_pred CCCCCCCCEEEECCCCCCCCCCceEEEECCCCEEEEEEcCCCCCCCcEEEEEEEEEECCCCC------------------
Confidence 667788889999998889999999998876 6999999999887889999999999764200
Q ss_pred eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535 405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456 (460)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~ 456 (460)
+..........+.+.|.+|.|++.|.|+|+|+|..|.|++|..+.
T Consensus 63 -------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~ 107 (119)
T 1wfn_A 63 -------TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI 107 (119)
T ss_dssp -------GCCCEEECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEE
T ss_pred -------ceEEEEeCCCceEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEE
Confidence 000011224678899999999999999999999999999998873
No 387
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.64 E-value=1.2e-16 Score=132.55 Aligned_cols=130 Identities=21% Similarity=0.221 Sum_probs=92.4
Q ss_pred cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEEE
Q psy535 9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQCH 79 (460)
Q Consensus 9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~ 79 (460)
++|+.+..++ +|.|.+++.+|+|.|+|.|.|..+. .......|.|. .+|.+...+....+.+|++++|.|.
T Consensus 57 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~ 136 (212)
T 1nfd_E 57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCL 136 (212)
T ss_dssp CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEE
T ss_pred cccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEE
Confidence 5788887543 8999999999999999999973221 11334566773 4566665444444567889999999
Q ss_pred EecC-CCCCeEEEeeCCeecCcccccc-EE-----EeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 80 IKAN-PTFQYVTWTKDKRLLEPYQTKD-IV-----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 80 ~~~~-~~~~~v~W~~~~~~~~~~~~~~-~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
+.+. |+.+.|+|+++|..+....... .. ....+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 137 ~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (212)
T 1nfd_E 137 VNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV 202 (212)
T ss_dssp EEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred EEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence 9987 4435899999998875421100 00 1112458999999999999999999987653
No 388
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.64 E-value=8.1e-16 Score=112.74 Aligned_cols=99 Identities=23% Similarity=0.350 Sum_probs=80.4
Q ss_pred EEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee
Q psy535 336 VKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414 (460)
Q Consensus 336 ~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (460)
+++...+|.+|.++++.... +++.|+|++|...++.|.+|.|+|+..+.. ...|..
T Consensus 4 ~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~-----------------------~~~~~~ 60 (111)
T 1x5l_A 4 GSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKE-----------------------MQSYST 60 (111)
T ss_dssp CCCSCCCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSC-----------------------CSSCEE
T ss_pred EEcCCCCCCCCceEEEEEcCCCEEEEEECCCCCCCCEEEEEEEEEEECCCC-----------------------ceeEEE
Confidence 45667779999999987766 599999999987788999999999976420 011111
Q ss_pred eccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 415 ~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
+ ....+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|+
T Consensus 61 ~---~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 103 (111)
T 1x5l_A 61 L---KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETG 103 (111)
T ss_dssp E---EESSSEEEECSCCTTCEEEECEEEEETTEECCCCCCEEEECC
T ss_pred e---cCCCCEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEEcC
Confidence 1 135678999999999999999999999999999999999884
No 389
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.64 E-value=7.2e-17 Score=136.03 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=78.1
Q ss_pred cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEec
Q psy535 9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKA 82 (460)
Q Consensus 9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (460)
.+|+.+..++ +|.|.+++.+|+|.|+|.+.+..+........|.|.. +|.+...+......+|++++|.|.+.+
T Consensus 81 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g 160 (233)
T 3bqu_C 81 PSRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN 160 (233)
T ss_dssp CTTCCCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred CccEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEcc
Confidence 5677665443 8999999999999999999987654333345566654 566665444333446889999999998
Q ss_pred CCCC-CeEEEeeCCeecCccccc--cE------EEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 83 NPTF-QYVTWTKDKRLLEPYQTK--DI------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 83 ~~~~-~~v~W~~~~~~~~~~~~~--~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
.+++ ..++|+|+|..+...... .. .....+.|.|..+..+|+|.|+|.|.|....
T Consensus 161 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 161 FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp EBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred ccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 6443 379999999877532000 00 0011235889999999999999999986543
No 390
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.64 E-value=1.9e-15 Score=125.46 Aligned_cols=171 Identities=12% Similarity=0.172 Sum_probs=100.9
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC--------------ccccccEEEeecC---eEEEeecCC
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE--------------PYQTKDIVVMQNG---SLLFTRVNQ 121 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~~---~l~i~~~~~ 121 (460)
.|....+.+|++++|.|.+.+.+ ....+.|+|.. .... .....++.....+ .|.|.+++.
T Consensus 5 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 84 (215)
T 3nl4_H 5 ESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPTT 84 (215)
T ss_dssp EECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCCG
T ss_pred cCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCCc
Confidence 45567788999999999997632 23479999732 1110 0112344443332 499999999
Q ss_pred CCCeEEEEEEEcCCCC--cceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-C-CCeeEEEcCC
Q psy535 122 NHQGRYTCTPYNAHGT--QGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-Q-KPTITWQRRD 193 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~--~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~ 193 (460)
+|+|.|+|.+.+..+. ........|.|. .+|.+...+... .+..|+.++|.|.+. +. | ...+.|++++
T Consensus 85 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~l~C~~~---~~~p~~~~v~W~~~g 160 (215)
T 3nl4_H 85 EDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCC-GDTPSSTVTLGCLVK---GYLPEPVTVTWNSGT 160 (215)
T ss_dssp GGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCT-TCCC--CEEEEEEEE---EEBSSCCEEEEGGGT
T ss_pred ccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCc-cccCCCcEEEEEEEe---eeeCCCeEEEEeeCC
Confidence 9999999999987542 112222334444 455555333333 466799999999994 43 3 3467899844
Q ss_pred CccCCc---ccEEEecceEEE---ccccceeceEEEEEEecccceeeeeeE
Q psy535 194 GVALPK---NRVKIVGGNITI---EGLRRVDFGYYECVVSNEVATIVQAAQ 238 (460)
Q Consensus 194 ~~~~~~---~~~~~~~~~l~i---~~~~~~~~g~y~C~a~n~~g~~~~~~~ 238 (460)
..+.. ......++.+.+ ..+...| |.|+|.|.|..+.......
T Consensus 161 -~~~~~~~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~ 209 (215)
T 3nl4_H 161 -LTNGVRTFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKT 209 (215)
T ss_dssp -BCTTEEECCCEECTTSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEE
T ss_pred -EECCeEecCceECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEe
Confidence 32211 111112344444 4466667 9999999998876554433
No 391
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.64 E-value=7e-16 Score=113.91 Aligned_cols=106 Identities=23% Similarity=0.361 Sum_probs=86.9
Q ss_pred CCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY 404 (460)
Q Consensus 326 G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (460)
|.|..|..+.+.+...+|.+|.++++...+ +++.|+|++|.+ +.+.+|+|+|+..+..
T Consensus 1 G~g~~S~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~--~~i~~Y~v~~~~~~~~------------------- 59 (115)
T 1x5z_A 1 GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRS--DTIANYELVYKDGEHG------------------- 59 (115)
T ss_dssp CCCCCCCCCCCCCCSCCCCCCEEEEEECSSSSEEEEEEECCSC--CCCCEEEECBEESSSC-------------------
T ss_pred CCCCCCCCEEEECCCCCCCCCccCEeeeCCCCEEEEEEcCCCC--CCccEEEEEEEeCCCC-------------------
Confidence 567788888898888889999999998876 699999999975 3899999999975430
Q ss_pred eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
.|..+. ....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus 60 ------~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 107 (115)
T 1x5z_A 60 ------EEQRIT--IEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTM 107 (115)
T ss_dssp ------CCBCCE--ECSSSEEEEECCCTTCEEEECEEEECSSCEEEECCCEEEECC
T ss_pred ------CceEEe--cCCCcEEEECCCCCCCeEEEEEEEECCCcccCCCcCEEEecC
Confidence 010010 124588999999999999999999999999999999999884
No 392
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.63 E-value=5.1e-16 Score=112.02 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=71.6
Q ss_pred CCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421 (460)
Q Consensus 342 ~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (460)
+|.+|..+......+++.|.|.++.+++.+|++|.|+|+..+. ..|.....++..
T Consensus 8 ~P~pP~~~~~~~~~~sv~L~W~p~~dggsPI~~Y~I~yr~~~~-------------------------~~w~~~~~~~~~ 62 (114)
T 2kbg_A 8 EPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDK-------------------------EDQWLEKKVQGN 62 (114)
T ss_dssp CCCSCCEECCBCSTTCEEEEECCCCCSSSCCSEEEEEEEESSC-------------------------CSCCEEEEEETT
T ss_pred CccCCcccccccCCCEEEEEEECCCCCCCcccEEEEEEEeCCC-------------------------CCcEEeEEcCCC
Confidence 5788877665544579999999988888899999999998532 112222222346
Q ss_pred cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
.+.+.|.+|.|++.|+|||.|.|..|.|++|. ..++|
T Consensus 63 ~~~~~l~~L~p~t~Y~frV~A~N~~G~s~pS~-~~~~T 99 (114)
T 2kbg_A 63 KDHIILEHLQWTMGYEVQITAANRLGYSEPTV-YEFSM 99 (114)
T ss_dssp TCCEEECCCCTTCCEEEEEEEECTTSCEEEEE-EEECC
T ss_pred cCEEEEcCCCCCCEEEEEEEEEeCCcCcCCcC-CEEEc
Confidence 67899999999999999999999999999987 45665
No 393
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.63 E-value=3.9e-15 Score=126.37 Aligned_cols=169 Identities=14% Similarity=0.205 Sum_probs=105.2
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--------------CCeecCccc--cccEEEeec----CeEEEe
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--------------DKRLLEPYQ--TKDIVVMQN----GSLLFT 117 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--------------~~~~~~~~~--~~~~~~~~~----~~l~i~ 117 (460)
.+...|....+.+|++++|.| ..+.+.+ .+.|+| ++....... ..++....+ .+|.|.
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 81 (245)
T 4ei6_B 4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHL-YFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ 81 (245)
T ss_dssp CCEEECSEEEEETTCCEEEEE-ECCTTCC-EEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred ceEeCCceEEecCCCCEEEEE-EcCCCCC-EEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence 455667778889999999999 5555554 799998 222111110 144444432 279999
Q ss_pred ecCCCCCeEEEEEEEcCCC--CcceeeEEEEEee------CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-ee
Q psy535 118 RVNQNHQGRYTCTPYNAHG--TQGSSGQMEVLVR------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TI 187 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g--~~~~~~~~~v~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~ 187 (460)
+++.+|+|.|+|.+.+... .........|.|. .+|.+.+.+.....+..|+.++|.|.+ .+ .|.+ .+
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~---~g~~p~~~~v 158 (245)
T 4ei6_B 82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVEL 158 (245)
T ss_dssp SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE---EEEBSSCEEE
T ss_pred CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEE---eeEeCCCeEE
Confidence 9999999999999985321 1112222334443 355554433222245569999999998 45 4545 89
Q ss_pred EEEcCCCccCCcccEE----------------EecceEEEcccccee-ceEEEEEEecccce
Q psy535 188 TWQRRDGVALPKNRVK----------------IVGGNITIEGLRRVD-FGYYECVVSNEVAT 232 (460)
Q Consensus 188 ~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~ 232 (460)
.|+++ +..+...... .....|.|......| .|.|+|.+.|....
T Consensus 159 ~W~~~-g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 159 SWWVN-GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp EEEET-TEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EEEEC-CEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 99994 4443321110 111236777776667 89999999986544
No 394
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.63 E-value=2.3e-15 Score=128.77 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=92.2
Q ss_pred cccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCC---cceeeeEEEEecC--------------CeeEEcce
Q psy535 7 SLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGE---PQAAQAYLNVEFP--------------AKVTFTPT 64 (460)
Q Consensus 7 ~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~--------------p~~~~~~~ 64 (460)
...+|+++..++ +|.|.+++.+|+|.|+|.|.+..+. .....+.|.|..+ +.+...|.
T Consensus 70 ~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~ 149 (257)
T 3gkz_A 70 SLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPA 149 (257)
T ss_dssp TTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCS
T ss_pred cccccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCc
Confidence 345788888653 7999999999999999999986221 1234567777654 45666677
Q ss_pred eeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCc----------cccccEEEeec---CeEEEeecCCCCCeEEEE
Q psy535 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEP----------YQTKDIVVMQN---GSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~----------~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C 129 (460)
...+.+|++++|.|.+.+.+.+..+.|+|. +..+.. ....++..... .+|.|.+++.+|+|.|+|
T Consensus 150 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 229 (257)
T 3gkz_A 150 IMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFC 229 (257)
T ss_dssp EEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred eEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEE
Confidence 788999999999999998766547999983 222110 00133333222 259999999999999999
Q ss_pred EEEcCC
Q psy535 130 TPYNAH 135 (460)
Q Consensus 130 ~~~~~~ 135 (460)
.|.+..
T Consensus 230 ~~~~~~ 235 (257)
T 3gkz_A 230 HQWSSF 235 (257)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 998753
No 395
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.63 E-value=1.3e-15 Score=114.52 Aligned_cols=109 Identities=22% Similarity=0.316 Sum_probs=79.5
Q ss_pred CCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccce
Q psy535 327 DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405 (460)
Q Consensus 327 ~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (460)
.+..|..+.+... .+|.+|.++.+...+ +++.|+|+++.+++++|.+|.|+|+....
T Consensus 2 ~s~~s~~~~~~v~-~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~--------------------- 59 (127)
T 1uey_A 2 SSGSSGPTPAPVY-DVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMH--------------------- 59 (127)
T ss_dssp CCCCCCCCCCCCC-CSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTT---------------------
T ss_pred CCCCcEEEEEEee-cCCcCCCCcEEEEccCCEEEEEEECCCCCCCCceEEEEEEEECCC---------------------
Confidence 3344555555444 459999999998776 69999999987778899999999987431
Q ss_pred ecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce-eEeecC
Q psy535 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI-VVVKTK 460 (460)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~-~~~~T~ 460 (460)
....|..+.......+. .+.+|.|++.|.|||+|+|..|.|++|.. ..++|+
T Consensus 60 --~~~~w~~~~~~~~~~~~-~i~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~T~ 112 (127)
T 1uey_A 60 --KPGLWHHQTEVSGTQTT-AQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK 112 (127)
T ss_dssp --CTTCEEEEEEEESSCCE-EEECCCTTCEECCEEEEEESSCBCCCCSCCCCEECC
T ss_pred --CCCccEEEeeeCCCceE-EEecCCCCCEEEEEEEEEeCCccCCccccccceEcC
Confidence 11123333222223344 57799999999999999999999999998 467764
No 396
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.63 E-value=8.3e-15 Score=122.93 Aligned_cols=176 Identities=15% Similarity=0.173 Sum_probs=105.6
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC--------------ccccccEEEeec-----CeEEEeec
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE--------------PYQTKDIVVMQN-----GSLLFTRV 119 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~-----~~l~i~~~ 119 (460)
.|....+.+|++++|.|.+.+.+ ....+.|+|.. .... .....++....+ .+|.|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (232)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 34456788999999999998764 23479999842 2110 011245554432 27999999
Q ss_pred CCCCCeEEEEEEEcCC--CC--cceeeEEEEEeeC----CCceee-CCCcccccCCC-CeEEEEeeeeccCCCCCC-eeE
Q psy535 120 NQNHQGRYTCTPYNAH--GT--QGSSGQMEVLVRK----PPAFTI-KPEAMYQRKVG-ESVDMHCEAQEAEGTQKP-TIT 188 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~--g~--~~~~~~~~v~v~~----~p~~~~-~~~~~~~~~~g-~~~~l~C~~~~~~~~p~~-~~~ 188 (460)
+.+|+|.|+|.+.+.. +. ........|.|.. +|.+.. .+.. .+..| +.++|.|.+. ...|.+ .+.
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~--~~~~g~~~v~L~C~~~--g~~P~p~~v~ 161 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCE--NSPSDTSSVAVGCLAQ--DFLPDSITFS 161 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC--------CCSEEEEEEEE--EEBSSCCEEE
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecccc--ccCCCCCcEEEEEEEE--EEeCCCeEEE
Confidence 9999999999998321 11 1111223455543 344432 2222 24467 8999999983 334766 999
Q ss_pred EEcCCCccCCcc---------cEEEecceEEEccccc--eeceEEEEEEecccceeeeeeEEEE
Q psy535 189 WQRRDGVALPKN---------RVKIVGGNITIEGLRR--VDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 189 W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~--~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
|++.++..+... ......+.|.|..... .|.|.|+|.+.|..+.......+.+
T Consensus 162 W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~ 225 (232)
T 1dn0_B 162 WKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV 225 (232)
T ss_dssp EEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred EEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence 999333332210 0111223577777776 6789999999999887655554443
No 397
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Probab=99.63 E-value=7.8e-14 Score=121.19 Aligned_cols=248 Identities=13% Similarity=0.088 Sum_probs=137.2
Q ss_pred cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
.++-..+..|++++|.|.+.. +. .|.|+++|..... ..+++|.|.++...|+|.|+|.+ .+.....
T Consensus 12 ~~~~~~~~~G~~v~l~C~~~~-~~--~i~W~~~~~~~~~--------~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~ 77 (306)
T 3d85_D 12 ELDWYPDAPGEMVVLTCDTPE-ED--GITWTLDQSSEVL--------GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSH 77 (306)
T ss_dssp EEECCSSCCCEEEEEECSSSC-CS--SCEEEETTCCCCC--------EESSEEEEEECSGGGCEEEEEEE---TTEEEEE
T ss_pred eCCcccCccCCcEEEECCCCC-CC--cCEEEECCccccC--------CCCCEEEEEecCcCCCceEEEee---CCcccce
Confidence 333344567999999998873 22 6999999885421 25678999999999999999998 2444334
Q ss_pred eEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccCC-----------cccEEE-
Q psy535 142 GQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVALP-----------KNRVKI- 204 (460)
Q Consensus 142 ~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~~-----------~~~~~~- 204 (460)
+.+.|.... +..+...+.. .-....|.|.. ...+ .....|..+....+. ......
T Consensus 78 ~~l~v~~~~~~~~~t~i~~~~~~-----pp~~~~lsC~~---~~~~~~~~C~W~pg~~~~l~~~~~~~r~~~~~~~~~C~ 149 (306)
T 3d85_D 78 SLLLLHKKEDGIWSTDILKDQKE-----PKNKTFLRCEA---KNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCG 149 (306)
T ss_dssp EEEEEEEEETTEECCCSSCCCC--------CCCCCEEEB---SSSSSEEEEEEEESCCSSEEEEEEEEECSSSCEEEEEC
T ss_pred EEEEEEeccCCcceeeeecccCC-----CCCCCcceEEc---CCcccCcEEEecCCCCCceeEEEEEEecCCCCcceECC
Confidence 444433210 0111111000 00122445544 2222 334445442221110 000000
Q ss_pred ----ecceEEEcccc-----------------ceeceEEEEEEecccceeeeeeEEEE-ecCCCCCCCceeeee-e-cce
Q psy535 205 ----VGGNITIEGLR-----------------RVDFGYYECVVSNEVATIVQAAQLVV-EGTQPHAPYNITGVA-T-EFS 260 (460)
Q Consensus 205 ----~~~~l~i~~~~-----------------~~~~g~y~C~a~n~~g~~~~~~~l~v-~~~~p~~p~~~~~~~-~-~~~ 260 (460)
....+.+.+.. ....+.++|.|.|..|.......+.+ ....|.||.++.... . ...
T Consensus 150 ~~~~~~~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~ 229 (306)
T 3d85_D 150 AATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQ 229 (306)
T ss_dssp CCEEEEEEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC----C
T ss_pred CCCCCccceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCCCc
Confidence 00111111111 11346678999999997655544432 124688898887654 2 368
Q ss_pred EEEEeecCCCCCCC---ceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535 261 VTLEWLPGYSGGPD---LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336 (460)
Q Consensus 261 ~~l~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~ 336 (460)
+.|+|.++...+.+ ....|.+.|+..+...|...... ....+.|. ++..|.++++|.|..|.|.+|.....
T Consensus 230 l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~~~~~~~~--~~ts~~l~---~~~~Y~vqVRa~~~~~~G~WSeWS~~ 303 (306)
T 3d85_D 230 VEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFT--DKTSATVI---CRKNASISVRAQDRYYSSSWSEWASV 303 (306)
T ss_dssp EEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEE--SSSEEEEC---CCSSCEEEEEEEESSSCCCCCCCEEE
T ss_pred EEEEEcCCCCCcCCCceeeEEEEEEEEECCCCccEEEeec--cccEEEEe---CCCeEEEEEEeccCCCCCCCCCCCCC
Confidence 99999987543321 23689999998776555443322 33456663 58999999999999888888876543
No 398
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.63 E-value=4.4e-15 Score=124.42 Aligned_cols=168 Identities=16% Similarity=0.211 Sum_probs=106.0
Q ss_pred ceeeeecceeeEEEEEEEecCCC-C--CeEEEeeCC--eecC--------------ccccccEEEee-----cCeEEEee
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT-F--QYVTWTKDK--RLLE--------------PYQTKDIVVMQ-----NGSLLFTR 118 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~-~--~~v~W~~~~--~~~~--------------~~~~~~~~~~~-----~~~l~i~~ 118 (460)
|....+.+|++++|.|.+.+.+. . ..+.|+|.. ..+. .....++.+.. +.+|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 55567889999999999988753 1 479999842 2210 01124555443 24799999
Q ss_pred cCCCCCeEEEEEEEcCCC------Cc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-
Q psy535 119 VNQNHQGRYTCTPYNAHG------TQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP- 185 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g------~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~- 185 (460)
++.+|+|.|+|.+.+..| .. .......|.|. .+|.+...+... .+..|+.++|.|.+ .+. |.+
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~~~l~C~~---~g~~P~p~ 162 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLV---KGYFPEPV 162 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEE---EEEBSSCC
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccc-cccCCCCEEEEEEE---ccEeCCCE
Confidence 999999999999988654 10 11112344454 245544333222 35689999999998 454 777
Q ss_pred eeEEEcCCCccCCc---ccEE-----EecceEEEccccceeceEEEEEEecccceeeee
Q psy535 186 TITWQRRDGVALPK---NRVK-----IVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236 (460)
Q Consensus 186 ~~~W~~~~~~~~~~---~~~~-----~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 236 (460)
.+.|++++.. ... .... ...+.|.|.....++ |.|+|.|.|..+.....
T Consensus 163 ~v~W~~~~~~-~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~ 219 (228)
T 3bae_H 163 TLTWNSGSLS-SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD 219 (228)
T ss_dssp EEEEGGGTCC-TTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred EEEEeeCCcc-cCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence 9999985442 211 0010 123357888777755 99999999998875433
No 399
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.63 E-value=1.4e-14 Score=120.68 Aligned_cols=164 Identities=11% Similarity=0.120 Sum_probs=104.1
Q ss_pred ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eec-----------------CccccccEEEeecC-----eEEEe
Q psy535 63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLL-----------------EPYQTKDIVVMQNG-----SLLFT 117 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~-----------------~~~~~~~~~~~~~~-----~l~i~ 117 (460)
|....+.+|++++|.|.+.+.+ ....+.|+|.. ... ......++....+. +|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 86 (221)
T 3m8o_H 7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN 86 (221)
T ss_dssp ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence 4456688999999999998743 23479999732 111 01112455544332 59999
Q ss_pred ecCCCCCeEEEEEEEcCCCCcceeeEEEEEee----CCCcee-eCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEE
Q psy535 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR----KPPAFT-IKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQ 190 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~ 190 (460)
+++.+|+|.|+|.+.+............|.|. .+|.+. ..+.. . ..|+.++|.|.+. ...|. +.+.|+
T Consensus 87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~--~-~~g~~v~L~C~~~--~~~P~~~~~v~W~ 161 (221)
T 3m8o_H 87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCS--T-QPDGNVVIACLVQ--GFFPQEPLSVTWS 161 (221)
T ss_dssp SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCS--C-CCTTEEEEEEEEE--EEBSSCSEEEEES
T ss_pred CCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcc--c-ccCCCEEEEEEEE--eeECCCCEEEEEE
Confidence 99999999999999886311111222234443 234443 22322 2 6799999999994 22665 489999
Q ss_pred cCCCccC----------CcccEEEecceEEEccccceeceEEEEEEecccce
Q psy535 191 RRDGVAL----------PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 191 ~~~~~~~----------~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
+++..+. ....+. ..+.|.|......|.|.|+|.+.+..+.
T Consensus 162 ~~g~~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d~g~ytC~v~~~~~~ 212 (221)
T 3m8o_H 162 ESGQGVTARNFPPSQDASGDLYT-TSSQLTLPATQCLAGKSVTCHVKHYTNP 212 (221)
T ss_dssp CCSTTCEEEECCCEECSSSSCEE-EEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred ECCEECceEEcCceeeCCCCcEE-EEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence 8543321 111222 2235888888888999999999998654
No 400
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.63 E-value=1.9e-15 Score=127.94 Aligned_cols=127 Identities=19% Similarity=0.286 Sum_probs=88.6
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-------------eEEcceeeeecce
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-------------VTFTPTVQYLPFR 71 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g 71 (460)
.++|+.+..++ +|.|.+++.+|+|.|+|.+.|..+......+.|.|..++. ....+....+.+|
T Consensus 58 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G 137 (242)
T 2znx_A 58 IPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPS 137 (242)
T ss_dssp SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTT
T ss_pred CCCCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCC
Confidence 35788886543 8999999999999999999987553323456788876542 2233444568899
Q ss_pred eeEEEEEEEecCCC-CCeEEEeeC--CeecC--------------ccccccEEEeec-----CeEEEeecCCCCCeEEEE
Q psy535 72 LQGVVQCHIKANPT-FQYVTWTKD--KRLLE--------------PYQTKDIVVMQN-----GSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 72 ~~~~l~C~~~~~~~-~~~v~W~~~--~~~~~--------------~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C 129 (460)
++++|.|.+.+.+. .+.+.|+|+ +..+. +....++....+ .+|.|.+++.+|+|.|+|
T Consensus 138 ~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 217 (242)
T 2znx_A 138 QTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYC 217 (242)
T ss_dssp SCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred CeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEE
Confidence 99999999988752 347999994 32221 001234444322 379999999999999999
Q ss_pred EEEcC
Q psy535 130 TPYNA 134 (460)
Q Consensus 130 ~~~~~ 134 (460)
.|.|.
T Consensus 218 ~a~~~ 222 (242)
T 2znx_A 218 ANXDG 222 (242)
T ss_dssp EETTS
T ss_pred eccCC
Confidence 99873
No 401
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.63 E-value=5e-16 Score=130.21 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=104.3
Q ss_pred EcceeeeecceeeEEEEEEEecC-CC-CCeEEEeeCCeec-CccccccEEEee------cCeEEEeecCCCCCeEEEEEE
Q psy535 61 FTPTVQYLPFRLQGVVQCHIKAN-PT-FQYVTWTKDKRLL-EPYQTKDIVVMQ------NGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 61 ~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~v~W~~~~~~~-~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~ 131 (460)
..|....+.+|++++|.|.+.+. |. +..|+|+++|..+ ... ........ ...|.|.++..+|+|.|+|.|
T Consensus 18 ~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~-~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~ 96 (231)
T 2w59_A 18 IPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPD-PMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTV 96 (231)
T ss_dssp ECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCC-CCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred eCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccc-cccceECCCCcEEEEEEEEecchhccCCCEEEEEE
Confidence 45555567789999999999985 43 2489999999877 321 11111112 235999999999999999999
Q ss_pred EcCCCCcceeeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CC-CCeeEEEcCCCccCCccc-E--
Q psy535 132 YNAHGTQGSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQ-KPTITWQRRDGVALPKNR-V-- 202 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p-~~~~~W~~~~~~~~~~~~-~-- 202 (460)
.+..+... ..+.|.+ ..+|.+.+.+.....+ .+..++|.|.+ .+ .| .+.+.|++++ ..+.... .
T Consensus 97 ~~~~~~~~--~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~---~g~~P~~~~v~W~k~g-~~l~~~~~~~~ 169 (231)
T 2w59_A 97 QHEELPLP--LSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLV---RGFRPRDIEIRWLRDH-RAVPATEFVTT 169 (231)
T ss_dssp ECTTCSSC--EEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEE---EEEBSSCCEEEEEETT-EECCGGGCEEC
T ss_pred EcCCCCCc--eEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEE---EeccCCCcEEEEEECC-EECCCcccccC
Confidence 98775432 2333322 2456655443222123 34579999999 45 34 4799999954 4443221 1
Q ss_pred --EE---------ec-c------eEEEccccceeceEEEEEEecccce
Q psy535 203 --KI---------VG-G------NITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 203 --~~---------~~-~------~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
.. .+ + .|.|......|.|.|+|.|.|....
T Consensus 170 ~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 170 AVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp CCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred ccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 11 12 2 3566666666799999999987644
No 402
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.63 E-value=1e-15 Score=127.12 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=87.2
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCC---cceeeeEEEEe----cCCeeEEcceeeeecceeeEEEE
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGE---PQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQ 77 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~ 77 (460)
..+|+.+..++ +|.|.+++.+|+|.|.|.+.+..+. .......|.|. .+|.+...+....+.+|+.++|.
T Consensus 62 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~ 141 (215)
T 3nl4_H 62 AKGRFTISKTSTTVDLKITSPTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLG 141 (215)
T ss_dssp GTTTEEEEECSSEEEEEESSCCGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEE
T ss_pred ccCCEEEEeeCCEEEEEECCCCcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEE
Confidence 46888887754 6999999999999999999987542 12344677776 45555533434455679999999
Q ss_pred EEEecCCC-CCeEEEeeCCeecCccccccEEEeecCeEEE---eecCCCCCeEEEEEEEcCCCCc
Q psy535 78 CHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF---TRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 78 C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
|.+.+.++ +..+.|++++..+....... ....++.+.+ ..+...| |.|+|.|.|..+..
T Consensus 142 C~~~~~~p~~~~v~W~~~g~~~~~~~~~~-~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~ 204 (215)
T 3nl4_H 142 CLVKGYLPEPVTVTWNSGTLTNGVRTFPS-VRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATNT 204 (215)
T ss_dssp EEEEEEBSSCCEEEEGGGTBCTTEEECCC-EECTTSCEEEEEEEEECC----CCEEEEEEGGGTE
T ss_pred EEEeeeeCCCeEEEEeeCCEECCeEecCc-eECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCCc
Confidence 99988643 44688999997654322222 2334556665 5677788 99999999987654
No 403
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.62 E-value=1e-15 Score=121.45 Aligned_cols=111 Identities=16% Similarity=0.278 Sum_probs=82.0
Q ss_pred ccceEEEe-eCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe---eEEcceeeeecceeeEEEEEEEecC
Q psy535 8 LETRVVIK-KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK---VTFTPTVQYLPFRLQGVVQCHIKAN 83 (460)
Q Consensus 8 ~~~r~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~l~C~~~~~ 83 (460)
..+|+.+. .+|+|.|.+++.+|+|.|+|.|.+..| ...+.|.|..++. +..... ...|.|.+.+.
T Consensus 49 ~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~---~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~ 117 (171)
T 1ccz_A 49 FKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEG 117 (171)
T ss_dssp GTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSC
T ss_pred cCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC---cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCC
Confidence 45688885 568999999999999999999998776 5678888876532 221111 13799999987
Q ss_pred CCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535 84 PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 84 ~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~ 140 (460)
|.+ .++|++++..+... ....|.+. ...|+|.|+|.|.|..+....
T Consensus 118 p~p-~i~W~~~~~~l~~~--------~~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~ 163 (171)
T 1ccz_A 118 TDV-ELKLYQGKEHLRSL--------RQKTMSYQ--WTNLRAPFKCKAVNRVSQESE 163 (171)
T ss_dssp SSC-EEEEEETTEEEEEE--------SSSEEEEE--CSCCSSCEEEEEEETTEEEEE
T ss_pred CCc-EEEEEECCEECcCC--------cceEEEEe--ccCCCceEEEEEEcccCcccc
Confidence 765 89999999887521 11234433 378899999999999887543
No 404
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.62 E-value=1.3e-15 Score=127.06 Aligned_cols=129 Identities=14% Similarity=0.165 Sum_probs=90.2
Q ss_pred cceEEEeeC---C--eEEEeecCCCCCeeEEEEEEeCCCCc--ceeeeEEEEec----CCeeEEcceeeeecceeeEEEE
Q psy535 9 ETRVVIKKD---G--TLVINPVGSDDSGLYMCEVSNGIGEP--QAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVVQ 77 (460)
Q Consensus 9 ~~r~~~~~~---~--~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~ 77 (460)
.+|+.+..+ + +|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|.. +|.+...+....+.+|+.++|.
T Consensus 67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~ 146 (220)
T 1pz5_B 67 KGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLG 146 (220)
T ss_dssp TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEE
T ss_pred CCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEE
Confidence 579998753 2 89999999999999999999875431 12456777762 4555444433345679999999
Q ss_pred EEEecC-CCCCeEEEeeCCeecCccccccE----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 78 CHIKAN-PTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 78 C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
|.+.+. |.+..|+|++++........... .....+.|.|.++..+| |.|+|.|.|..|..
T Consensus 147 C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 211 (220)
T 1pz5_B 147 CLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV 211 (220)
T ss_dssp EEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE
T ss_pred EEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccE
Confidence 999987 55438999998874210000110 11223568898888766 99999999988754
No 405
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.62 E-value=2.5e-15 Score=125.12 Aligned_cols=129 Identities=17% Similarity=0.230 Sum_probs=92.7
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEec----CCeeEEcceeeeecceeeEEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVV 76 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l 76 (460)
..+|+.+..+ .+|.|.+++.+|+|.|.|.+.+..+. .....+.|.|.. +|.+...+ ...+.+|+.++|
T Consensus 64 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L 142 (220)
T 2fbj_H 64 LKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVII 142 (220)
T ss_dssp TTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEE
T ss_pred cCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEE
Confidence 4589999864 38999999999999999999987542 112346788864 45555444 334568999999
Q ss_pred EEEEecC-CC-CCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 77 QCHIKAN-PT-FQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 77 ~C~~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
.|.+.+. |. ++.|.|++++..+....... ....+ +.|.|......|+|.|+|.|.|..+..
T Consensus 143 ~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~-~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~ 211 (220)
T 2fbj_H 143 GCLIHDYFPSGTMNVTWGKSGKDITTVNFPP-ALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV 211 (220)
T ss_dssp EEEEEEEBSCCCEEEEESCCCSSCEEEECCC-EECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred EEEEEeEECCCcEEEEEecCCEecceEecCc-eECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence 9999987 54 35899999987652111111 11122 248888888899999999999988765
No 406
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.62 E-value=3.2e-16 Score=132.14 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=91.4
Q ss_pred ccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEE
Q psy535 8 LETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 8 ~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C 78 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.|.+..+. .....+.|.|. .+|.+...+......+|++++|.|
T Consensus 78 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C 157 (234)
T 2j6e_L 78 VPDRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVC 157 (234)
T ss_dssp SCTTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEE
T ss_pred ccccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEE
Confidence 3578887653 38999999999999999999998762 22334566663 355555444333334588999999
Q ss_pred EEecCCCC-CeEEEeeCCeecCcccc-ccEEEe------ecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 79 HIKANPTF-QYVTWTKDKRLLEPYQT-KDIVVM------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 79 ~~~~~~~~-~~v~W~~~~~~~~~~~~-~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
.+.+.+++ ..|+|+|+|..+..... ...... ..+.|.|.++..+|+|.|+|.|.|.....
T Consensus 158 ~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 225 (234)
T 2j6e_L 158 LISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV 225 (234)
T ss_dssp CCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred EEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence 99986443 48999999998753210 000001 11358899999999999999999976653
No 407
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.62 E-value=5.4e-15 Score=128.12 Aligned_cols=126 Identities=14% Similarity=0.237 Sum_probs=92.8
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC----cceeeeEEEEecC---------------CeeEEcc
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE----PQAAQAYLNVEFP---------------AKVTFTP 63 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~---------------p~~~~~~ 63 (460)
..+|+++..+ ++|.|.+++.+|+|.|+|.+.|..|. .....+.|.|..+ +.+...|
T Consensus 90 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p 169 (282)
T 1qok_A 90 FQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSP 169 (282)
T ss_dssp GBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEEC
T ss_pred hcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCC
Confidence 3589988763 48999999999999999999998651 1123457888754 3355567
Q ss_pred eeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecCc----------cccccEEEee---cCeEEEeecCCCCCeEEE
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLEP----------YQTKDIVVMQ---NGSLLFTRVNQNHQGRYT 128 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~~----------~~~~~~~~~~---~~~l~i~~~~~~d~G~y~ 128 (460)
....+.+|++++|.|.+.+.+ + .+.|+| ++..+.. ....++.... ..+|.|.+++.+|+|.|+
T Consensus 170 ~~~~v~~G~~v~L~C~~~~~~-~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 247 (282)
T 1qok_A 170 AIMSASPGEKVTITCSASSSV-S-YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYY 247 (282)
T ss_dssp SEEEECTTCCEEEEEEESSCC-S-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CEEEEcCCCcEEEEEEecCCC-c-eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEE
Confidence 777889999999999999887 4 799999 5554310 0123343322 236999999999999999
Q ss_pred EEEEcCC
Q psy535 129 CTPYNAH 135 (460)
Q Consensus 129 C~~~~~~ 135 (460)
|.|.+..
T Consensus 248 C~a~~~~ 254 (282)
T 1qok_A 248 CQQRSSY 254 (282)
T ss_dssp EEECSSS
T ss_pred EEEeeCC
Confidence 9998753
No 408
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}
Probab=99.62 E-value=4e-15 Score=108.28 Aligned_cols=92 Identities=28% Similarity=0.467 Sum_probs=75.5
Q ss_pred CCCCCCcceEEEe--ec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535 341 PKPGPPRNVSVTE--VN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417 (460)
Q Consensus 341 ~~P~~p~~~~~~~--~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (460)
..|.+|.++++.. .+ +++.|+|++|...++.|.+|.|+|+..+. ..|....
T Consensus 6 ~~P~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~-------------------------~~~~~~~- 59 (108)
T 2dm4_A 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGS-------------------------KMWASQR- 59 (108)
T ss_dssp CCTTSCEEEEEECCTTCSSCEEEEEECCSCCSSCEEEEEEEEEETTC-------------------------SCCEEEE-
T ss_pred CCCcCCcCeEEEEeccCCCEEEEEEcCCCCCCCcEEEEEEEEEECCC-------------------------CCeEEec-
Confidence 4588999998876 23 69999999998778899999999997543 1122221
Q ss_pred CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus 60 --~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 100 (108)
T 2dm4_A 60 --AASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTI 100 (108)
T ss_dssp --ESSSEEEECSCCSSCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred --CCccEEEeCCCCCCCEEEEEEEEECCCceeCCCCCEEEECC
Confidence 24568999999999999999999999999999999999884
No 409
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.62 E-value=2.1e-15 Score=112.75 Aligned_cols=108 Identities=23% Similarity=0.373 Sum_probs=83.1
Q ss_pred CCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCccccccccee
Q psy535 331 SNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYRE 406 (460)
Q Consensus 331 s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (460)
|..+.+++....|. +|.++++...+ +++.|+|++|.. .++.+.+|.|+|+..+...
T Consensus 3 S~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~-------------------- 62 (122)
T 1va9_A 3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGS-------------------- 62 (122)
T ss_dssp CCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTS--------------------
T ss_pred CCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCC--------------------
Confidence 44556667777775 89999998876 699999999976 5789999999999865300
Q ss_pred cCceeeeeec-cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 407 QGNKDWLPIP-VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 407 ~~~~~~~~~~-~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...|.... ......+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus 63 --~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 115 (122)
T 1va9_A 63 --NGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTL 115 (122)
T ss_dssp --CCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEEEETTEECCCCCCEECCCC
T ss_pred --CcceEEEEEecCCceeEEEeCCCCCCCEEEEEEEEEcCCCCCCCccCEEEEeC
Confidence 00111111 11234678999999999999999999999999999999999884
No 410
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-15 Score=108.22 Aligned_cols=93 Identities=20% Similarity=0.343 Sum_probs=77.2
Q ss_pred CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535 340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT 418 (460)
Q Consensus 340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (460)
..+|.+|.++++...+ +++.|+|++|...++.+.+|.|+|+..+.. .|..+.
T Consensus 5 ~~~P~~P~~l~~~~~~~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~-------------------------~~~~~~-- 57 (106)
T 2ed8_A 5 SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTG-------------------------KEQNIE-- 57 (106)
T ss_dssp CCCCCCCEEEEEECSSTTEEEEEEECCSSCSSCCCEEEEEEEETTTC-------------------------CEEEEE--
T ss_pred CCCCcCCceeEEEecCCCEEEEEECCCCCCCCCeeEEEEEEEECCCC-------------------------ceEEEe--
Confidence 3568999999998876 699999999987778999999999976531 111121
Q ss_pred CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...+++.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus 58 -~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 98 (106)
T 2ed8_A 58 -VDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTL 98 (106)
T ss_dssp -ECSSCEEEESCCTTCEEEEEEEEECSSCEEEECCCEEEECC
T ss_pred -CCccEEEECCCCCCCEEEEEEEEEeCCccCCCcCCEEEEcC
Confidence 13578999999999999999999999999999999999884
No 411
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.62 E-value=8.1e-15 Score=123.98 Aligned_cols=170 Identities=13% Similarity=0.152 Sum_probs=105.7
Q ss_pred eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--------------CeecC-ccccccEEEee----cCeEEEee
Q psy535 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--------------KRLLE-PYQTKDIVVMQ----NGSLLFTR 118 (460)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--------------~~~~~-~~~~~~~~~~~----~~~l~i~~ 118 (460)
.+...|....+.+|++++|.|.+.+ +.+ .+.|+|. +.... .....++.... +.+|.|.+
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 81 (240)
T 3q5y_A 4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA 81 (240)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCT-TCC-EEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred ccccCcceeeecCCCcEEEEEEeCC-CCc-eEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence 3455677788899999999999876 443 7999982 11111 01123444443 23699999
Q ss_pred cCCCCCeEEEEEEEcCCC-CcceeeEEEEEee------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEE
Q psy535 119 VNQNHQGRYTCTPYNAHG-TQGSSGQMEVLVR------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQ 190 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g-~~~~~~~~~v~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~ 190 (460)
++.+|+|.|+|.+.+..+ .........|.|. .+|.+.+.+.....+..|+.++|.|.+. ...|.+ .+.|+
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~--g~~P~~~~v~W~ 159 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLAR--GFFPDHVELSWW 159 (240)
T ss_dssp CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEE--EEBSSCEEEEEE
T ss_pred CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEe--eEECCCeEEEEE
Confidence 999999999999973211 1112222233333 4555554332222456689999999983 225656 79999
Q ss_pred cCCCccCCccc------EEEec------ceEEEcccccee-ceEEEEEEecccce
Q psy535 191 RRDGVALPKNR------VKIVG------GNITIEGLRRVD-FGYYECVVSNEVAT 232 (460)
Q Consensus 191 ~~~~~~~~~~~------~~~~~------~~l~i~~~~~~~-~g~y~C~a~n~~g~ 232 (460)
+++ ..+.... ....+ ..|.|......| .|.|+|.+.|....
T Consensus 160 ~~g-~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 160 VNG-KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp ETT-EEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred ECC-EECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 954 4432211 11112 237777777777 67999999986544
No 412
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.62 E-value=6.3e-15 Score=125.96 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=88.5
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEecCCe--------------------eEEc
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEFPAK--------------------VTFT 62 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~p~--------------------~~~~ 62 (460)
..+|+.+..++ +|.|.+++.+|+|.|+|.+.+..+. .....+.|.|..++. ....
T Consensus 61 ~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (256)
T 3ux9_B 61 VPDRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE 140 (256)
T ss_dssp CCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE
T ss_pred cCCcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc
Confidence 45788887654 8999999999999999999986542 123456777765441 1223
Q ss_pred ceeeeecceeeEEEEEEEecCCC-CCeEEEeeC--CeecC---------------ccccccEEEeecC-----eEEEeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKD--KRLLE---------------PYQTKDIVVMQNG-----SLLFTRV 119 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~-----~l~i~~~ 119 (460)
+....+.+|++++|.|.+.+.+. .+.+.|+|+ +..+. .....++....++ +|.|.++
T Consensus 141 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 220 (256)
T 3ux9_B 141 SGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSL 220 (256)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCC
Confidence 33455889999999999988652 348999986 32221 0112244444332 4999999
Q ss_pred CCCCCeEEEEEEEcCC
Q psy535 120 NQNHQGRYTCTPYNAH 135 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~ 135 (460)
+.+|+|.|+|.|.|..
T Consensus 221 ~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 221 RAEDTAVYYCARYIDF 236 (256)
T ss_dssp CGGGCEEEEEEEEETT
T ss_pred ChhhCEEEEEEEEcCC
Confidence 9999999999999853
No 413
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.62 E-value=2.8e-15 Score=128.06 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=91.1
Q ss_pred ccceEEEee-----CCeEEEeecCCCCCeeEEEEEEeCCCCc---ceeeeEEEEec--------------------CCee
Q psy535 8 LETRVVIKK-----DGTLVINPVGSDDSGLYMCEVSNGIGEP---QAAQAYLNVEF--------------------PAKV 59 (460)
Q Consensus 8 ~~~r~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~ 59 (460)
.++|+.+.. +++|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|.. ++.+
T Consensus 61 ~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (256)
T 3tf7_C 61 GVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAV 140 (256)
T ss_dssp CSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCE
T ss_pred cCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEE
Confidence 356777742 2389999999999999999999875421 12345777764 5567
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecCc-------------cccccEEEe----ecCeEEEeecC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLEP-------------YQTKDIVVM----QNGSLLFTRVN 120 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~~-------------~~~~~~~~~----~~~~l~i~~~~ 120 (460)
...|....+.+|++++|.|.+.+. . +.+.|+|.. ..... ....++... ...+|.|.+++
T Consensus 141 ~~~p~~~~v~~G~~v~L~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 218 (256)
T 3tf7_C 141 TQSPRNKVTVTGENVTLSCRQTNS-H-NYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESAS 218 (256)
T ss_dssp EESCSEEEEETTCCEEECEEECSC-C-SEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCC
T ss_pred EecCCEEEEeCCCcEEEEEEcCCC-c-eEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCC
Confidence 777888888899999999999876 3 379999832 11100 001222222 12369999999
Q ss_pred CCCCeEEEEEEEcCCCCc
Q psy535 121 QNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 121 ~~d~G~y~C~~~~~~g~~ 138 (460)
.+|+|.|+|.|.|..|..
T Consensus 219 ~~DsG~Y~C~a~n~~g~~ 236 (256)
T 3tf7_C 219 PSQTSLYFCASSDAPGQL 236 (256)
T ss_dssp GGGCEEEEEEEEEETTEE
T ss_pred HHHCEEEEEEecCCCCcc
Confidence 999999999999876644
No 414
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.61 E-value=3e-15 Score=110.06 Aligned_cols=97 Identities=23% Similarity=0.318 Sum_probs=75.2
Q ss_pred CCCCCCcceEEEeec-ceEEEEecCCC--CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535 341 PKPGPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417 (460)
Q Consensus 341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~--~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (460)
.+|.+|.++++...+ ++|.|+|++|. ..++.|.+|.|+|+..+... ...|... .
T Consensus 7 ~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~----------------------~~~~~~~-~ 63 (114)
T 1x4y_A 7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDN----------------------DSDYKKD-M 63 (114)
T ss_dssp SCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCS----------------------GGGCCCE-E
T ss_pred CCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCC----------------------CcceeeE-e
Confidence 346899999998876 69999999986 35789999999998654300 0011100 1
Q ss_pred CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
.....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus 64 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~ 106 (114)
T 1x4y_A 64 VEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETK 106 (114)
T ss_dssp EETTCCEEEECSCCTTCEEEEEEEEECTTCCCCCCCCEEEECC
T ss_pred cCCcEeEEEcCCCCCCCEEEEEEEEEcCCccCCCcCCEEEEeC
Confidence 1134578999999999999999999999999999999999985
No 415
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.61 E-value=2.7e-15 Score=111.86 Aligned_cols=107 Identities=22% Similarity=0.492 Sum_probs=82.6
Q ss_pred CCCCCCCCcEEEEccCCCCCCCcce--EEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535 325 LGDGMLSNIVVVKTKGPKPGPPRNV--SVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401 (460)
Q Consensus 325 ~G~~~~s~~~~~~~~~~~P~~p~~~--~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~ 401 (460)
+|....+..+.+. .+|.+|.++ .+...+ +++.|+|.+|.++++++.+|.|+|+..+.
T Consensus 3 ~G~~~~s~~l~v~---~~P~~P~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~----------------- 62 (121)
T 1wf5_A 3 SGSSGRSAHLRVR---QLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNA----------------- 62 (121)
T ss_dssp CCCCCCCCCSSCC---CCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTC-----------------
T ss_pred CCcccceEEEEEe---eCCccCCCcceeeEeccCCEEEEEEcCCCCCCCcceEEEEEEEcCCC-----------------
Confidence 4656666666655 348899999 676665 69999999997777899999999996531
Q ss_pred ccceecCceeeeee-ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee-EeecC
Q psy535 402 GEYREQGNKDWLPI-PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTK 460 (460)
Q Consensus 402 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~-~~~T~ 460 (460)
.|..+ .......+.++|.+|.|++.|.|||+|+|..|.|++|... .++|+
T Consensus 63 ---------~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~t~ 114 (121)
T 1wf5_A 63 ---------PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLP 114 (121)
T ss_dssp ---------CCEEEESSCCTTCCEEEEESCCTTCEEEEEEEEEESSCEEEECCCCSCEECC
T ss_pred ---------CceEeEcccCCCccEEEECCcCCCCEEEEEEEEEcCCccCCCcCCcceeEcC
Confidence 23333 2233567889999999999999999999999999999886 46653
No 416
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.61 E-value=6.4e-15 Score=122.87 Aligned_cols=131 Identities=12% Similarity=0.190 Sum_probs=91.3
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC---C--cceeeeEEEEec----CCeeEEcceeeeecceee
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG---E--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQ 73 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~ 73 (460)
..+|+.+..+ .+|.|.+++.+|+|.|+|.+.+..+ . .....+.|.|.. +|.+...+....+.+|+.
T Consensus 64 ~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~ 143 (223)
T 1dee_B 64 VKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSST 143 (223)
T ss_dssp TBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSE
T ss_pred cCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCc
Confidence 4689999764 3899999999999999999998653 1 112345788863 444443222223467899
Q ss_pred EEEEEEEecC-CCCCeEEEee-CCeecCccc-------cccEEEeecCeEEEeecCC--CCCeEEEEEEEcCCCCcce
Q psy535 74 GVVQCHIKAN-PTFQYVTWTK-DKRLLEPYQ-------TKDIVVMQNGSLLFTRVNQ--NHQGRYTCTPYNAHGTQGS 140 (460)
Q Consensus 74 ~~l~C~~~~~-~~~~~v~W~~-~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~g~~~~ 140 (460)
++|.|.+.+. |.+..++|++ +|..+.... ...+ ...+.|.|..... +|.|.|+|.|.|..+....
T Consensus 144 v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~--~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~ 219 (223)
T 1dee_B 144 VAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKY--AATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEK 219 (223)
T ss_dssp EEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEE--EEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEE
T ss_pred EEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeE--EEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcc
Confidence 9999999987 5444899999 888774300 0111 1123588877766 7899999999998876543
No 417
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.61 E-value=1.4e-14 Score=120.14 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=103.0
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC--------------ccccccEEEeec-----CeEEEeec
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE--------------PYQTKDIVVMQN-----GSLLFTRV 119 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~-----~~l~i~~~ 119 (460)
.|....+.+|++++|.|.+.+.+ ....+.|+|+. .... .....++....+ .+|.|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (215)
T 1c5d_H 6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL 85 (215)
T ss_dssp EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence 35556788999999999998764 23479999852 2110 011245554431 27999999
Q ss_pred CCCCCeEEEEEEEcCCCCc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEEEcC
Q psy535 120 NQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITWQRR 192 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~ 192 (460)
+.+|+|.|+|.+.+..+.. .......|.|. .+|.+...+... .+..|+.++|.|.+ .+. |.+ .+.|+++
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W~~~ 161 (215)
T 1c5d_H 86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGC-GDTTSSTVTLGCLV---KGYFPEPVTVTWNSG 161 (215)
T ss_dssp CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCS-SCCCCSSEEEEEEE---EEEBSSCCEEEEGGG
T ss_pred CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCCh-hhccCCcEEEEEEE---eeeEcCCcEEEEccC
Confidence 9999999999998864221 11112344444 245554433222 35689999999999 454 777 9999985
Q ss_pred CCccCC-cccEEEecceEE----EccccceeceEEEEEEecccceeee
Q psy535 193 DGVALP-KNRVKIVGGNIT----IEGLRRVDFGYYECVVSNEVATIVQ 235 (460)
Q Consensus 193 ~~~~~~-~~~~~~~~~~l~----i~~~~~~~~g~y~C~a~n~~g~~~~ 235 (460)
+..... .......++.+. +......+ |.|+|.+.|..+....
T Consensus 162 g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~ 208 (215)
T 1c5d_H 162 ALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV 208 (215)
T ss_dssp TTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred CccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence 432111 111111112221 22233244 9999999998876543
No 418
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.1e-15 Score=109.36 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCCcEEEEcc-CCCCCCCcceEEEeec-ceEEEEecCCCCCCccc----eEEEEEEEEcCCeeeeccccCCCCccccccc
Q psy535 330 LSNIVVVKTK-GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLI----QYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403 (460)
Q Consensus 330 ~s~~~~~~~~-~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i----~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (460)
.|..+.+... ..+|.+|.++++...+ ++|.|+|+++...++.+ .+|+|+|+..+.
T Consensus 5 ~s~~~~~~~~~~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~i~~~~~~Y~v~y~~~~~------------------- 65 (123)
T 2edd_A 5 SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFS------------------- 65 (123)
T ss_dssp CSCCCCSCSSCCCSSCCCEEEEEEEEETTEEEEEEECSSSCSSCCCSCCCCEEEEEEETTC-------------------
T ss_pred cCCCCcCCCccCCCCCCCcceEEEEcCCCeEEEEecCCCCCcccccCcCceEEEEEEECCC-------------------
Confidence 3444444433 3457899999998877 69999999886555444 499999997532
Q ss_pred ceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
+...|..+. ...+.++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.
T Consensus 66 ----~~~~~~~~~---~~~~~~~v~gL~P~T~Y~f~V~A~n~~g~g~~S~~v~~~T~ 115 (123)
T 2edd_A 66 ----ASAKYKSED---TTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTY 115 (123)
T ss_dssp ----TTCCCCCEE---ESSSEEEEESCCTTCEEEEEEEECCSSSCCCCCCCEEEECC
T ss_pred ----CCccEEEEe---CCceEEEecCCCCCCEEEEEEEEeCCCcccCCCCCEEEEcc
Confidence 000111111 24678999999999999999999999999999999999984
No 419
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.61 E-value=6.4e-15 Score=127.49 Aligned_cols=172 Identities=13% Similarity=0.182 Sum_probs=106.8
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC---------------ccccccEEEeec----CeEE
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE---------------PYQTKDIVVMQN----GSLL 115 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~----~~l~ 115 (460)
+.+...|....+.+|++++|.|.+.+.+.+ .+.|+|++ .... .....++....+ .+|.
T Consensus 25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~ 103 (279)
T 2wbj_D 25 AVVSQHPSWVISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 103 (279)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSSCEE-EEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred ceEEeCCCeEEecCCCeEEEEEEeCCCCCC-eEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence 345566777889999999999999776544 79999853 1110 001245554432 3799
Q ss_pred EeecCCCCCeEEEEEEEcCCC----Cc--ceeeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC
Q psy535 116 FTRVNQNHQGRYTCTPYNAHG----TQ--GSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK 184 (460)
Q Consensus 116 i~~~~~~d~G~y~C~~~~~~g----~~--~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~ 184 (460)
|.+++.+|+|.|+|.+.+..+ .. .....+.|.. ..+|.+.+.+.....+..|+.++|.|.+ .+. |.
T Consensus 104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~---~g~~P~ 180 (279)
T 2wbj_D 104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPD 180 (279)
T ss_dssp ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEE---EEEBSS
T ss_pred EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEE---eeEcCC
Confidence 999999999999999998432 11 1122333332 1356555432222234568999999999 454 53
Q ss_pred -CeeEEEcCCCccCCcccEEE----------ec------ceEEEcccccee-ceEEEEEEeccccee
Q psy535 185 -PTITWQRRDGVALPKNRVKI----------VG------GNITIEGLRRVD-FGYYECVVSNEVATI 233 (460)
Q Consensus 185 -~~~~W~~~~~~~~~~~~~~~----------~~------~~l~i~~~~~~~-~g~y~C~a~n~~g~~ 233 (460)
+.+.|+++ +..+....... .+ ..|.|......| .+.|+|.+.|.....
T Consensus 181 ~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~ 246 (279)
T 2wbj_D 181 HVELSWWVN-GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 246 (279)
T ss_dssp CEEEEEEET-TEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred CcEEEEEEC-CEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence 69999994 44443221110 11 236666655544 678999999976543
No 420
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.60 E-value=4.5e-15 Score=107.76 Aligned_cols=93 Identities=23% Similarity=0.340 Sum_probs=72.7
Q ss_pred CCCCCcceEEEeec-ceEEEEecCCCC-CCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535 342 KPGPPRNVSVTEVN-NGFVISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419 (460)
Q Consensus 342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~-~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (460)
+|.+|..+++...+ +++.|+|.+|.. ++.+|++|.|+|+..+. ..|..+....
T Consensus 10 ~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~-------------------------~~w~~~~~~~ 64 (112)
T 1bpv_A 10 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPN-------------------------GRWLKANFSN 64 (112)
T ss_dssp CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTS-------------------------CCCEECCCSC
T ss_pred CCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCC-------------------------CceEEeeccc
Confidence 47778888887776 699999997754 45689999999997532 1244333333
Q ss_pred CCcceEEECCCCcCceEEEEEEEeecCCC-CCCCceeEeec
Q psy535 420 PGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKT 459 (460)
Q Consensus 420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~-s~~s~~~~~~T 459 (460)
...+.+++.+|.|++.|.|||+|+|..|. |++|..+.+.|
T Consensus 65 ~~~~~~~v~~L~p~t~Y~frV~A~N~~G~~s~~S~~~~~~t 105 (112)
T 1bpv_A 65 ILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAIT 105 (112)
T ss_dssp CCSSEEEECSCCSSCCEEEEEEEECTTSCEEEEEEEEEEEC
T ss_pred CccCEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEE
Confidence 46788999999999999999999999997 99998876554
No 421
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.60 E-value=6.1e-15 Score=125.32 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=88.4
Q ss_pred cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC------------e-eEEcceeeeeccee
Q psy535 9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA------------K-VTFTPTVQYLPFRL 72 (460)
Q Consensus 9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------~-~~~~~~~~~~~~g~ 72 (460)
.+|+.+..++ +|.|.+++.+|+|.|+|.+.|..+......+.|.|..++ . ....+....+.+|+
T Consensus 64 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 143 (247)
T 1svz_A 64 PDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGE 143 (247)
T ss_dssp CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTC
T ss_pred CCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCC
Confidence 5788886543 899999999999999999998765433345678886542 1 22333445688999
Q ss_pred eEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEeec-----CeEEEeecCCCCCeEEEE
Q psy535 73 QGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQN-----GSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 73 ~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C 129 (460)
+++|.|.+.+.+ +.+.+.|+|++ ..+. .....++....+ .+|.|.+++.+|+|.|+|
T Consensus 144 ~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 223 (247)
T 1svz_A 144 TVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFC 223 (247)
T ss_dssp CEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred cEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEE
Confidence 999999998875 23479999953 2110 001234444321 379999999999999999
Q ss_pred EEEcC
Q psy535 130 TPYNA 134 (460)
Q Consensus 130 ~~~~~ 134 (460)
.|.|.
T Consensus 224 ~a~n~ 228 (247)
T 1svz_A 224 VRDRH 228 (247)
T ss_dssp EEEEG
T ss_pred EEecc
Confidence 99884
No 422
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.60 E-value=1.7e-14 Score=122.95 Aligned_cols=166 Identities=14% Similarity=0.198 Sum_probs=105.0
Q ss_pred cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~ 118 (460)
.|....+.+|++++|.|.+.+.+. ...+.|+|+. ..+. .....++.+.. +..|.|.+
T Consensus 12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 91 (261)
T 2xqy_G 12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS 91 (261)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence 355667889999999999987652 3479999853 2211 00124555443 23799999
Q ss_pred cCCCCCeEEEEEEEcCCCCc-ceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcC
Q psy535 119 VNQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRR 192 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~ 192 (460)
++.+|+|.|+|.+.+..+.. .......|.|.. +|.+...+... .+..|+.++|.|.+. ...|.+ .+.|+++
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~v~~g~~v~L~C~~~--g~~P~~i~v~W~k~ 168 (261)
T 2xqy_G 92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVK--GYFPEPVTLTWNSG 168 (261)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCC-C--CCSEEEEEEEEE--EEBSSCCEEEEGGG
T ss_pred CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCc-cccCCCcEEEEEEEE--eEeCCCCEEEEecC
Confidence 99999999999999864311 111223455543 45544332222 356799999999983 224666 9999985
Q ss_pred CCccCCc---ccE-----EEecceEEEccccceeceEEEEEEecccce
Q psy535 193 DGVALPK---NRV-----KIVGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 193 ~~~~~~~---~~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
+. .+.. ... ......|.|......+ |.|+|.+.|....
T Consensus 169 g~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 169 SL-SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp TC-CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred CC-cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 54 2211 111 1123468888887777 9999999986554
No 423
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.60 E-value=2.2e-15 Score=125.96 Aligned_cols=128 Identities=12% Similarity=0.168 Sum_probs=88.9
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC-----C--cceeeeEEEEec----CCeeEEcceeeeecce
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG-----E--PQAAQAYLNVEF----PAKVTFTPTVQYLPFR 71 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g 71 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.+.+..| . .....+.|.|.. +|.+...+....+.+|
T Consensus 64 ~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g 143 (225)
T 1op3_H 64 VKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSG 143 (225)
T ss_dssp TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCC
T ss_pred cCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCC
Confidence 4579998763 4899999999999999999998764 1 112356788875 3444332222234679
Q ss_pred eeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEee------cCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 72 LQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQ------NGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 72 ~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
+.++|.|.+.+. |.+..|.|++++..+......... .. .+.|.|.++..+| |.|+|.|.|..+.
T Consensus 144 ~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 144 GTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp CEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEE-CTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred CcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCcee-CCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 999999999987 544489999998764311111111 11 2358899888888 9999999986543
No 424
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.60 E-value=3.6e-15 Score=124.91 Aligned_cols=130 Identities=19% Similarity=0.188 Sum_probs=88.2
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC------C--cceeeeEEEEec----CCeeEEcceeeeecc
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG------E--PQAAQAYLNVEF----PAKVTFTPTVQYLPF 70 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~ 70 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.+.+..| . .....+.|.|.. +|.+...+....+.+
T Consensus 65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~ 144 (228)
T 3bae_H 65 LESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTT 144 (228)
T ss_dssp TGGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----C
T ss_pred cCCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccC
Confidence 4689998753 5899999999999999999998754 1 112346788863 455544332334567
Q ss_pred eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
|+.++|.|.+.+. |.+..|.|++++..+.......+. ....+.|.|.++..+| |.|+|.|.|..+..
T Consensus 145 g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~ 216 (228)
T 3bae_H 145 GSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASST 216 (228)
T ss_dssp CSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred CCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence 9999999999986 554489999998764311111111 1122358888888766 99999999987764
No 425
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.1e-15 Score=108.59 Aligned_cols=97 Identities=27% Similarity=0.475 Sum_probs=76.5
Q ss_pred CCCCCCcceEEEee--c-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535 341 PKPGPPRNVSVTEV--N-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417 (460)
Q Consensus 341 ~~P~~p~~~~~~~~--~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (460)
.+|.+|.++++... + +++.|+|++|...++.|.+|.|+|+..+.. ....|... .
T Consensus 7 ~P~~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~----------------------~~~~~~~~-~ 63 (114)
T 2ede_A 7 GPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNI----------------------PIDDWIME-T 63 (114)
T ss_dssp CCCSCCEEEEEEECSSCSSCEEEEEECCSSCSSCCSEEEEEEESCSSS----------------------CTTTSEEE-E
T ss_pred CCCCCCcceEEEEccCCCCEEEEEECCCCCCCCceeEEEEEEEeCCCC----------------------CccceEEE-E
Confidence 33589999999876 4 599999999987788999999999964320 00112211 1
Q ss_pred CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
.....+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|.
T Consensus 64 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 106 (114)
T 2ede_A 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTL 106 (114)
T ss_dssp EETTCCEEEECSCCSSCEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred ECCCceEEEEcCCCCCCEEEEEEEEEeCCcCcCCcccEEEEec
Confidence 1246788999999999999999999999999999999999884
No 426
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.59 E-value=9e-15 Score=106.91 Aligned_cols=91 Identities=25% Similarity=0.522 Sum_probs=73.3
Q ss_pred CCCCCCCcceEEEeec-ceEEEEecCCCCCCc-cceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535 340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERAS-LIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417 (460)
Q Consensus 340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~-~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (460)
..+|.+|.++++...+ +++.|+|++|...++ ++.+|.|+|+..+. ..|..+..
T Consensus 6 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~-------------------------~~w~~~~~ 60 (111)
T 1x5y_A 6 SGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGS-------------------------EEWVPANK 60 (111)
T ss_dssp CSCCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTC-------------------------CCCEESSS
T ss_pred CCCCcCCCCCEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCC-------------------------CceEEccc
Confidence 4568999999998876 699999999876544 69999999997542 13444333
Q ss_pred CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455 (460)
Q Consensus 418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~ 455 (460)
.....+.+++.+|.+++.|.|||+|+|..|.|++|...
T Consensus 61 ~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~ 98 (111)
T 1x5y_A 61 EPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLL 98 (111)
T ss_dssp SCBSSSEEEEECCCTTCCEEEEEEEEETTEECCCCCCS
T ss_pred cCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCccCC
Confidence 33457889999999999999999999999999998865
No 427
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.2e-15 Score=109.29 Aligned_cols=91 Identities=26% Similarity=0.382 Sum_probs=75.8
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|+|++..+.. ...++....+++|.|.++..+|+|.|+|.|.|.
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~g~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 84 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVP-TILWRKDGVLVST-QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTP 84 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCC-EEEEEESSSBCCT-TSTTEEEEETTEEEEESCCGGGCCCEEEEEECS
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCC-EEEEEECCEECcC-CCCeEEEccCCEEEEccCCcCCCEEEEEEEEcC
Confidence 46777778888889999999999999998776 7999999988864 345666777889999999999999999999999
Q ss_pred CCCcceeeEEEEE
Q psy535 135 HGTQGSSGQMEVL 147 (460)
Q Consensus 135 ~g~~~~~~~~~v~ 147 (460)
.|.......+.|.
T Consensus 85 ~g~~~~~~~l~V~ 97 (118)
T 2eo9_A 85 SGEATWSAYIEVQ 97 (118)
T ss_dssp SCEEEEECCEEEE
T ss_pred CCcEEEEEEEEEE
Confidence 9886555554444
No 428
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.59 E-value=5e-15 Score=126.13 Aligned_cols=175 Identities=13% Similarity=0.167 Sum_probs=106.8
Q ss_pred cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--ee---c------------CccccccEEEeecC-----eEEEee
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RL---L------------EPYQTKDIVVMQNG-----SLLFTR 118 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~------------~~~~~~~~~~~~~~-----~l~i~~ 118 (460)
.|....+.+|++++|.|.+.+.. ....+.|+|.. .. + ......|+....+. +|.|.+
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (253)
T 3liz_H 6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS 85 (253)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 34556788999999999997632 23469999832 11 1 00112344444322 399999
Q ss_pred cCCCCCeEEEEEEEcCCC--CcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEc
Q psy535 119 VNQNHQGRYTCTPYNAHG--TQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQR 191 (460)
Q Consensus 119 ~~~~d~G~y~C~~~~~~g--~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~ 191 (460)
++.+|+|.|.|.+.+... .........|.|. .+|.+...+... .+..|+.++|.|.+. ...|.+ .+.|++
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~--g~~P~~~~v~W~~ 162 (253)
T 3liz_H 86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVK--GYFPEPVTVTWNS 162 (253)
T ss_dssp CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------CCEEEEEEEEE--EEBSSCCEEEEGG
T ss_pred CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCc-ccCCCCcEEEEEEEe--eEeCCCeEEEEEe
Confidence 999999999999987521 1111222334443 455554333322 356799999999994 226666 899998
Q ss_pred CCCcc--------CCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 192 RDGVA--------LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 192 ~~~~~--------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
++... .....+ ...+.|.|......| |.|+|.+.|..+.......+.+
T Consensus 163 ~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~ 218 (253)
T 3liz_H 163 GSLSSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP 218 (253)
T ss_dssp GTBCTTEEECCCEEETTEE-EEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred CCeecceEeCCccccCCeE-EEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence 54311 011111 123568888888888 9999999998887655555443
No 429
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.59 E-value=2.8e-15 Score=127.68 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=88.2
Q ss_pred cccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC---CcceeeeEEEEe----cCCeeEEcceeeeecceeeE
Q psy535 7 SLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG---EPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQG 74 (460)
Q Consensus 7 ~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~ 74 (460)
...+|+++..++ +|.|.+++.+|+|.|.|.+.+... ........|.|. .+|.+...+....+..|+.+
T Consensus 63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v 142 (253)
T 3liz_H 63 TVKGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMV 142 (253)
T ss_dssp TTTTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEE
T ss_pred ccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcE
Confidence 345899987653 599999999999999999988621 111344577775 35555544444455679999
Q ss_pred EEEEEEec-CCCCCeEEEeeCCeecCccccccE----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535 75 VVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG 139 (460)
Q Consensus 75 ~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~ 139 (460)
+|.|.+.+ .|.+..+.|++++..+........ .....+.|.|.....+| |.|+|.|.|..+...
T Consensus 143 ~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~ 211 (253)
T 3liz_H 143 TLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 211 (253)
T ss_dssp EEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEE
T ss_pred EEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcc
Confidence 99999998 554447999999874321111111 11122469999999999 999999999876543
No 430
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}
Probab=99.59 E-value=6.7e-15 Score=109.37 Aligned_cols=96 Identities=24% Similarity=0.387 Sum_probs=73.2
Q ss_pred CCCCCCCcceEEEeecceEEEEecCCCCCCcc-ceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeec
Q psy535 340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASL-IQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416 (460)
Q Consensus 340 ~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~-i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (460)
..+|.+|.++.+...+.++.|+|++|...++. |.+|.|+|+..+. |... +..+.
T Consensus 5 ~~~P~~P~~~~~~~~~~tv~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~-----------------------~~~~~ 61 (122)
T 2e3v_A 5 SSGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK-----------------------WYDAK 61 (122)
T ss_dssp -CCCCCCEEEEEEECSSCEEEEEECCCCC--CCEEEEEEEEEETTCCSCEEE-----------------------EEEHH
T ss_pred CcCCcCCCccEEEecCCcEEEEECCCCcCCCCcceEEEEEEEECCCCCcccc-----------------------eeeee
Confidence 34688899999988775699999999766664 9999999997653 3110 01011
Q ss_pred cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
.....+.++|.+|.|++.|.|+|+|+|..|.|++|..+.++|
T Consensus 62 -~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~~t 103 (122)
T 2e3v_A 62 -EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103 (122)
T ss_dssp -HHHTTTEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEEC
T ss_pred -ecCccceEEeCCCCCCCEEEEEEEEEeCCccCCCcccccccc
Confidence 113567899999999999999999999999999999988865
No 431
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.59 E-value=1.3e-14 Score=121.03 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=90.6
Q ss_pred ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC-CcceeeeEEEEe----cCCeeE-EcceeeeecceeeEEE
Q psy535 8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVE----FPAKVT-FTPTVQYLPFRLQGVV 76 (460)
Q Consensus 8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~-~~~~~~~~~~g~~~~l 76 (460)
..+|+.+..++ +|.|.+++.+|+|.|.|.+.+... ........|.|. .+|.+. ..+... .+|+.++|
T Consensus 66 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L 143 (221)
T 3m8o_H 66 MRGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVI 143 (221)
T ss_dssp GTTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEE
T ss_pred ccccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEE
Confidence 46899998664 699999999999999999998642 222445677775 234443 233323 67899999
Q ss_pred EEEEec-CCC-CCeEEEeeCCeecCcc--------ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 77 QCHIKA-NPT-FQYVTWTKDKRLLEPY--------QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 77 ~C~~~~-~~~-~~~v~W~~~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
.|.+.+ .|. +..+.|+++|..+... ....+.. .+.|.|..+...|+|.|+|.|.+..+..
T Consensus 144 ~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 144 ACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT--SSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp EEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEE--EEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred EEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEE--EEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 999998 555 4589999998776321 1112211 2358899999999999999999976543
No 432
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.58 E-value=1.1e-14 Score=122.19 Aligned_cols=135 Identities=15% Similarity=0.244 Sum_probs=87.0
Q ss_pred ccceEEEeeC---C--eEEEeecCCCCCeeEEEEEEeCC--CC---cceeeeEEEEec----CCeeEE-cceeeeecce-
Q psy535 8 LETRVVIKKD---G--TLVINPVGSDDSGLYMCEVSNGI--GE---PQAAQAYLNVEF----PAKVTF-TPTVQYLPFR- 71 (460)
Q Consensus 8 ~~~r~~~~~~---~--~L~i~~~~~~d~G~Y~C~~~~~~--~~---~~~~~~~l~v~~----~p~~~~-~~~~~~~~~g- 71 (460)
..+|+.+..+ + +|.|.+++.+|+|.|.|.+.+.. +. .....+.|.|.. +|.+.. .|. ..+..|
T Consensus 63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~ 141 (232)
T 1dn0_B 63 LKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDT 141 (232)
T ss_dssp TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------C
T ss_pred cCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCC
Confidence 4689998753 2 89999999999999999998421 11 112346788865 244432 233 234467
Q ss_pred eeEEEEEEEecC-CCCCeEEEee-CCeecCccc-cccE----EEeecCeEEEeecCC--CCCeEEEEEEEcCCCCcceee
Q psy535 72 LQGVVQCHIKAN-PTFQYVTWTK-DKRLLEPYQ-TKDI----VVMQNGSLLFTRVNQ--NHQGRYTCTPYNAHGTQGSSG 142 (460)
Q Consensus 72 ~~~~l~C~~~~~-~~~~~v~W~~-~~~~~~~~~-~~~~----~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~g~~~~~~ 142 (460)
+.++|.|.+.+. |.+..++|++ +|..+.... .... .....+.|.|..... +|.|.|+|.|.|..+......
T Consensus 142 ~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~ 221 (232)
T 1dn0_B 142 SSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNV 221 (232)
T ss_dssp CSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEE
T ss_pred CcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeE
Confidence 899999999986 5544899999 888764310 0000 111123588888776 789999999999887654443
Q ss_pred E
Q psy535 143 Q 143 (460)
Q Consensus 143 ~ 143 (460)
.
T Consensus 222 ~ 222 (232)
T 1dn0_B 222 P 222 (232)
T ss_dssp E
T ss_pred e
Confidence 3
No 433
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=123.59 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=101.0
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Cee---cCcc----------ccc-cEEEeecCe--EEEeecCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRL---LEPY----------QTK-DIVVMQNGS--LLFTRVNQ 121 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~~~~----------~~~-~~~~~~~~~--l~i~~~~~ 121 (460)
...|....+.+|++++|.|.+.+.+.+ .+.|+|. +.. +... ... ++....++. |.|.+++.
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~ 83 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM 83 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCC-CEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESC
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcc-eEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCCh
Confidence 345667788899999999998776654 7999982 111 0000 011 444433333 99999999
Q ss_pred CCCeEEEEEEEcCCCC----cce--eeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEE
Q psy535 122 NHQGRYTCTPYNAHGT----QGS--SGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQ 190 (460)
Q Consensus 122 ~d~G~y~C~~~~~~g~----~~~--~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~ 190 (460)
+|+|.|+|.+.+..+. ... ...+.|.. ..+|.+.+.+.....+..|+.++|.|.+. ...|.+ .+.|+
T Consensus 84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~--g~~P~~i~v~W~ 161 (253)
T 3to4_D 84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLAT--GFYPDHVELSWW 161 (253)
T ss_dssp SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEE--EEBSSCEEEEEE
T ss_pred hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEc--eEECCcEEEEEE
Confidence 9999999999865431 111 12333331 14555544332222334578999999993 336666 89999
Q ss_pred cCCCccCCcccEE----------------EecceEEEcccccee-ceEEEEEEeccc
Q psy535 191 RRDGVALPKNRVK----------------IVGGNITIEGLRRVD-FGYYECVVSNEV 230 (460)
Q Consensus 191 ~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~-~g~y~C~a~n~~ 230 (460)
++ +..+...... .....|.|......| .|.|+|.+.+..
T Consensus 162 k~-g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 162 VN-GKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp ET-TEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred EC-CEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence 94 4443221111 011245566555555 679999999864
No 434
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=127.17 Aligned_cols=127 Identities=18% Similarity=0.319 Sum_probs=90.5
Q ss_pred ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeC--------CCCcceeeeEEEEec---------------CCee
Q psy535 8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNG--------IGEPQAAQAYLNVEF---------------PAKV 59 (460)
Q Consensus 8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~ 59 (460)
..+|+.+..++ +|.|.+++.+|+|.|.|.+.+. ..........|.|.. ++.+
T Consensus 64 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v 143 (280)
T 3fku_X 64 FQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGL 143 (280)
T ss_dssp GTTTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSB
T ss_pred cCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEE
Confidence 34789988553 8999999999999999999986 111123456777766 4556
Q ss_pred EEcceeeeecceeeEEEEEEEec-CCCCCeEEEeeC--CeecCc----------cccccEEEeecC---eEEEeecCCCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKA-NPTFQYVTWTKD--KRLLEP----------YQTKDIVVMQNG---SLLFTRVNQNH 123 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~v~W~~~--~~~~~~----------~~~~~~~~~~~~---~l~i~~~~~~d 123 (460)
...|. ..+.+|++++|.|.+.+ .+..+.+.|+|. +..+.. ....++....++ .|.|.+++.+|
T Consensus 144 ~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 222 (280)
T 3fku_X 144 TQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPED 222 (280)
T ss_dssp BCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred EeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHH
Confidence 66666 88899999999999988 433357999983 222110 012333333332 49999999999
Q ss_pred CeEEEEEEEcCC
Q psy535 124 QGRYTCTPYNAH 135 (460)
Q Consensus 124 ~G~y~C~~~~~~ 135 (460)
+|.|+|.+.+..
T Consensus 223 sG~Y~C~~~~~~ 234 (280)
T 3fku_X 223 EADYYCSTWDSS 234 (280)
T ss_dssp CSEEEEEEEETT
T ss_pred CEEEEEEEecCC
Confidence 999999998865
No 435
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.58 E-value=3.8e-15 Score=111.81 Aligned_cols=112 Identities=26% Similarity=0.210 Sum_probs=82.2
Q ss_pred CCcEEEEccCCCC-CCCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCccccccccee
Q psy535 331 SNIVVVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYRE 406 (460)
Q Consensus 331 s~~~~~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (460)
|..+.+.+.+..| .+|.++++...+ +++.|+|++|.. .++.|.+|.|+|+..+.-... .+ ..
T Consensus 2 S~~v~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~----------~~----~~ 67 (125)
T 1uen_A 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKR----------NR----RH 67 (125)
T ss_dssp CCCCCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCS----------TT----CC
T ss_pred CccEEEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCccc----------cc----cc
Confidence 3455667777777 799999998876 599999999853 477899999999975430000 00 00
Q ss_pred cCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 407 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...... ......+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus 68 -~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 117 (125)
T 1uen_A 68 -IEKKIL---TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTP 117 (125)
T ss_dssp -CCEEEE---EEESSCSEEEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred -ccceEE---EecCCccEEEeCCCCCCCEEEEEEEEecCCCCCCCCCCEEEECC
Confidence 000001 11245689999999999999999999999999999999999884
No 436
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.58 E-value=6e-15 Score=128.36 Aligned_cols=127 Identities=14% Similarity=0.206 Sum_probs=90.2
Q ss_pred cceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCC-CC---cceeeeEEEEec----------------CCeeEEcc
Q psy535 9 ETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGI-GE---PQAAQAYLNVEF----------------PAKVTFTP 63 (460)
Q Consensus 9 ~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~-~~---~~~~~~~l~v~~----------------~p~~~~~~ 63 (460)
.+|+++..+ ++|.|.+++.+|+|.|+|.+.+.. |. .....+.|.|.. ++.+...|
T Consensus 87 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p 166 (291)
T 2gki_A 87 KGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSP 166 (291)
T ss_dssp BTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSC
T ss_pred CCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCC
Confidence 578888652 489999999999999999999874 21 112345777766 23345556
Q ss_pred eeeeecceeeEEEEEEEecCCCC-----CeEEEeeCC--eecC---c-------cccccEEEeec---CeEEEeecCCCC
Q psy535 64 TVQYLPFRLQGVVQCHIKANPTF-----QYVTWTKDK--RLLE---P-------YQTKDIVVMQN---GSLLFTRVNQNH 123 (460)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~-----~~v~W~~~~--~~~~---~-------~~~~~~~~~~~---~~l~i~~~~~~d 123 (460)
....+.+|++++|.|.+.+.+.+ +.+.|+|+. ..+. . ....++....+ .+|.|.+++.+|
T Consensus 167 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 246 (291)
T 2gki_A 167 SSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAED 246 (291)
T ss_dssp SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHH
Confidence 67788999999999999887654 279999952 2111 0 01234433222 369999999999
Q ss_pred CeEEEEEEEcCC
Q psy535 124 QGRYTCTPYNAH 135 (460)
Q Consensus 124 ~G~y~C~~~~~~ 135 (460)
+|.|+|.+.|..
T Consensus 247 sG~Y~C~a~~~~ 258 (291)
T 2gki_A 247 LAVYYCKQSYYH 258 (291)
T ss_dssp CEEEEEEEEETT
T ss_pred CEEEEEEEccCC
Confidence 999999998853
No 437
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=105.26 Aligned_cols=90 Identities=22% Similarity=0.386 Sum_probs=73.1
Q ss_pred CCCCCCcceEEEeec-ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535 341 PKPGPPRNVSVTEVN-NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT 418 (460)
Q Consensus 341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (460)
.+|.+|.++++.... +++.|+|++|... +.++.+|.|+|+..+. ..|..+...
T Consensus 6 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~-------------------------~~w~~~~~~ 60 (110)
T 2yuw_A 6 SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGT-------------------------EDWIVANKD 60 (110)
T ss_dssp CCSCCCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTC-------------------------SSEEECCSS
T ss_pred CCCCCCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCC-------------------------ccceEeccc
Confidence 458999999998776 6999999998754 4589999999997542 134444333
Q ss_pred CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535 419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455 (460)
Q Consensus 419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~ 455 (460)
....+.+++.+|.+++.|.|||+|+|..|.|++|...
T Consensus 61 ~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~ 97 (110)
T 2yuw_A 61 LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYS 97 (110)
T ss_dssp CCCSSEEEECSCCTTCEEEEEEEEEETTEECCCEECS
T ss_pred cCccCEEEECCCCCCCEEEEEEEEEcCCcCCCCcCCC
Confidence 3567899999999999999999999999999998765
No 438
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.58 E-value=2.7e-14 Score=103.07 Aligned_cols=92 Identities=16% Similarity=0.277 Sum_probs=73.9
Q ss_pred ccCCCCCCCcceEEEeec-ceEEEEe--cCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee
Q psy535 338 TKGPKPGPPRNVSVTEVN-NGFVISW--QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414 (460)
Q Consensus 338 ~~~~~P~~p~~~~~~~~~-~~v~l~W--~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (460)
+...+|.+|.++++...+ ++|.|+| ++|...++. .+|.|+|+.... ...|..
T Consensus 5 T~~~~P~~p~~l~~~~~~~~sv~l~W~~~~P~~~ng~-~~Y~v~y~~~~~------------------------~~~~~~ 59 (107)
T 1x5a_A 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGN-LSYELHVLNQDE------------------------EWHQMV 59 (107)
T ss_dssp TTTCCCCCSCCCCEEEEETTEEEEECCCCCSSCCSSC-CEEEEEEECSSC------------------------EEEEEE
T ss_pred CCCCCCCCCCceEEEecCCCEEEEEECCCCCCCCCCc-eEEEEEEEeCCC------------------------CceEEE
Confidence 445679999999998877 6999999 888777788 999999986411 111221
Q ss_pred eccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 415 ~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
+ ...+.|.+|.|++.|.|+|+|.|..|.|++|..+.++|.
T Consensus 60 ~------~~~~~i~~L~p~t~Y~f~V~A~~~~G~g~~S~~~~~~T~ 99 (107)
T 1x5a_A 60 L------EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS 99 (107)
T ss_dssp S------SSEEEEESCCSSCEEEEEEEEECSSSCCCCCCCEEEECC
T ss_pred e------cceEEECCCCCCCEEEEEEEEECCCccCCCCCCEEEEEC
Confidence 1 122899999999999999999999999999999999884
No 439
>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.58 E-value=1.2e-14 Score=105.95 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=74.3
Q ss_pred CCCCCCCcceEEEeec-ceEEEEecCCCCCCc-cceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535 340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERAS-LIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417 (460)
Q Consensus 340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~-~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (460)
..+|.+|..+++...+ +++.|+|++|.+.++ +|.+|.|+|+..+. ...|..+.
T Consensus 5 ~~~P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~------------------------~~~~~~~~- 59 (109)
T 1x5x_A 5 SSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETS------------------------GYGFKPKY- 59 (109)
T ss_dssp CCCCCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSS------------------------SCCCEEEE-
T ss_pred CCCCcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCC------------------------CcceEEeE-
Confidence 3457788888877776 599999999987666 89999999986542 01122111
Q ss_pred CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
....+.++|.+|.|++.|.|||+|+|..|.|++|..+.++|.
T Consensus 60 -~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~ 101 (109)
T 1x5x_A 60 -DGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC 101 (109)
T ss_dssp -EESCSEEEEESCCSSCEEEEEEEEECSSCEEEECCCEEEECC
T ss_pred -eCCccEEEECCCCCCCEEEEEEEEEeCCCCcCCccCEEeEeC
Confidence 123678999999999999999999999999999999988874
No 440
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.57 E-value=1.6e-14 Score=122.59 Aligned_cols=165 Identities=12% Similarity=0.144 Sum_probs=90.7
Q ss_pred ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEeec-----CeEEEeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQN-----GSLLFTRV 119 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~-----~~l~i~~~ 119 (460)
|....+.+|++++|.|.+.+.+ ....+.|+|.. ..+. +....++....+ .+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL 86 (257)
T ss_dssp ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence 4456788999999999998764 13479999843 1110 111245554432 37999999
Q ss_pred CCCCCeEEEEEEEcCCCC---------c--ceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCCCCC
Q psy535 120 NQNHQGRYTCTPYNAHGT---------Q--GSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g~---------~--~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~ 184 (460)
+.+|+|.|.|.+.+..|. . .......|.|.. +|.+.+.+... .+..|+.++|.|.+. ...|.
T Consensus 87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~-~~~~g~~v~L~C~~~--g~~P~ 163 (257)
T 3bn9_D 87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVK--DYFPE 163 (257)
T ss_dssp CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEE--EEBSS
T ss_pred ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcc-cccCCCcEEEEEEEe--eEECC
Confidence 999999999999987641 1 111223455543 45544332222 356789999999993 23476
Q ss_pred C-eeEEEcCCCccCCc---ccEEE------ecceEEEccccceeceEEEEEEecccce
Q psy535 185 P-TITWQRRDGVALPK---NRVKI------VGGNITIEGLRRVDFGYYECVVSNEVAT 232 (460)
Q Consensus 185 ~-~~~W~~~~~~~~~~---~~~~~------~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 232 (460)
+ .+.|++++.. +.. ..... ....|.|......+ |.|+|.+.|....
T Consensus 164 pi~v~W~k~g~~-~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~ 219 (257)
T 3bn9_D 164 PVTVSWNSGALT-SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 219 (257)
T ss_dssp CCEEEETTTTCC-SSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred CcEEEEeeCCCc-CCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence 6 9999985543 211 01111 12245666666667 9999999996544
No 441
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.57 E-value=1.5e-14 Score=123.86 Aligned_cols=126 Identities=13% Similarity=0.190 Sum_probs=89.0
Q ss_pred cceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC------------------eeE-Ecceee
Q psy535 9 ETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA------------------KVT-FTPTVQ 66 (460)
Q Consensus 9 ~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~~-~~~~~~ 66 (460)
++|+.+..+ ++|.|.+++.+|+|.|+|.+.+..+......+.|.|..++ .+. ..+...
T Consensus 69 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (264)
T 2gjj_A 69 PDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE 148 (264)
T ss_dssp CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCE
T ss_pred CccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCE
Confidence 578888654 3899999999999999999998754322345678887653 222 223334
Q ss_pred eecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC------c---------cccccEEEee-----cCeEEEeecCCCC
Q psy535 67 YLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE------P---------YQTKDIVVMQ-----NGSLLFTRVNQNH 123 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~------~---------~~~~~~~~~~-----~~~l~i~~~~~~d 123 (460)
.+.+|++++|.|.+.+.+. .+.+.|+|+. ..+. . ....++.+.. ..+|.|.+++.+|
T Consensus 149 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 228 (264)
T 2gjj_A 149 VVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSED 228 (264)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCccc
Confidence 6889999999999988764 2479999963 2111 0 0023333321 2379999999999
Q ss_pred CeEEEEEEEcC
Q psy535 124 QGRYTCTPYNA 134 (460)
Q Consensus 124 ~G~y~C~~~~~ 134 (460)
+|.|+|.+.|.
T Consensus 229 sG~Y~C~a~n~ 239 (264)
T 2gjj_A 229 SADYYCVRSGN 239 (264)
T ss_dssp CEEEEEEEECS
T ss_pred CEEEEEEEecC
Confidence 99999999985
No 442
>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.57 E-value=1.3e-14 Score=105.93 Aligned_cols=95 Identities=22% Similarity=0.384 Sum_probs=74.6
Q ss_pred cCCCCCCCcceEEE-eec-ceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeee
Q psy535 339 KGPKPGPPRNVSVT-EVN-NGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415 (460)
Q Consensus 339 ~~~~P~~p~~~~~~-~~~-~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (460)
...+|.+|.++.+. ... +++.|+|++|. +++++|.+|.|+|+..+. ..|..+
T Consensus 5 ~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~-------------------------~~~~~~ 59 (110)
T 2crz_A 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEK-------------------------DEPREV 59 (110)
T ss_dssp CCCCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTS-------------------------CCCEEE
T ss_pred cCCCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCC-------------------------CceEEE
Confidence 34568999999984 444 69999998875 456789999999996432 122222
Q ss_pred ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
. ....+.++|.+|.|++.|.|||+|+|..|.|++|+.+.+.|.
T Consensus 60 ~--~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~g~~S~~~~~~T~ 102 (110)
T 2crz_A 60 Y--QGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102 (110)
T ss_dssp E--EESCSEEEEESCCTTCEEEECCEEECSSCBCCCCCCEEEECC
T ss_pred E--eCCcEEEEECCcCCCCEEEEEEEEEcCCccCCCCCccccccC
Confidence 1 135678999999999999999999999999999999988874
No 443
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=99.57 E-value=2.1e-14 Score=129.16 Aligned_cols=215 Identities=16% Similarity=0.110 Sum_probs=111.1
Q ss_pred cccceeceEEEEEEec------ccceeeeeeEEEE----ecCCCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEE
Q psy535 213 GLRRVDFGYYECVVSN------EVATIVQAAQLVV----EGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVI 281 (460)
Q Consensus 213 ~~~~~~~g~y~C~a~n------~~g~~~~~~~l~v----~~~~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~ 281 (460)
.+.....+.|+..|.| ..|..+....... .+.|+.+|.++.+. .....+.++|.++...+. ...|.+
T Consensus 94 ~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~p~~~~~~--~~~Y~l 171 (380)
T 3lb6_C 94 GFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLL--DTNYNL 171 (380)
T ss_dssp ECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEECC--------CCEEE
T ss_pred eecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEcCCCCCCC--CccEEE
Confidence 3344556788888874 3344332222222 13466778888764 455689999998654422 257888
Q ss_pred EEEecCCCCeeee---eccCCCCceEEEc--cCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEeec
Q psy535 282 WYREQGNKDWLPI---PVTPPGSTQITIN--RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEVN 355 (460)
Q Consensus 282 ~~~~~~~~~~~~~---~~~~~~~~~~~i~--~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~ 355 (460)
.|+..+...+... .........+.+. ++.....|.+++.|.|..|... +..+.+.... ..|.||.++.+....
T Consensus 172 ~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~-s~~~~~~~~~~v~p~pP~~l~v~~~~ 250 (380)
T 3lb6_C 172 FYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIR-SSYFTFQLQNIVKPLPPVYLTFTRES 250 (380)
T ss_dssp EEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CC-CEEEEECGGGSCCCCCCEEEEEC---
T ss_pred EEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeec-cccEEEcHHHcccCCCCceEEEEEcC
Confidence 8886554333222 1111122245555 4567889999999999988764 3445666555 358999999998754
Q ss_pred -ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECC-CCc
Q psy535 356 -NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINR-LTP 432 (460)
Q Consensus 356 -~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-L~p 432 (460)
+++.|+|++|... ++.+.+|+|+|+..+. .|..... ..++.|.+ |.|
T Consensus 251 ~~~l~l~W~~P~~~~~~~~l~Yev~y~~~~~--------------------------~w~~~~~----~~~~~l~~~L~p 300 (380)
T 3lb6_C 251 SCEIKLKWSIPLGPIPARCFDYEIEIREDDT--------------------------TLVTATV----ENETYTLKTTNE 300 (380)
T ss_dssp ----CEEEECCSSSCCSTTEEEEECC----------------------------------CCEE----SSSCC-------
T ss_pred CCeEEEEECCCCCCCCcceEEEEEEEEeCCC--------------------------CceEecc----cceEEEeCccCC
Confidence 6999999998754 3578999999997432 1221111 12456888 999
Q ss_pred CceEEEEEEEeec-----CC-CCCCCceeEeecC
Q psy535 433 ATTYEFQVVGKNE-----LG-DGMLSNIVVVKTK 460 (460)
Q Consensus 433 ~~~Y~~~v~a~n~-----~G-~s~~s~~~~~~T~ 460 (460)
++.|.|+|+|... .| +|+||+++.++|+
T Consensus 301 ~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~~t~ 334 (380)
T 3lb6_C 301 TRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGE 334 (380)
T ss_dssp -----CCEEEEECTTTCSSCCCCCCCCC------
T ss_pred CcEEEEEEEEEEcccCCCCCCCCCCCCCEEEeCC
Confidence 9999999999943 34 4788888887763
No 444
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.57 E-value=2.8e-14 Score=115.19 Aligned_cols=128 Identities=14% Similarity=0.039 Sum_probs=88.6
Q ss_pred ceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE-cceeeeecceeeEEEEEEEecC-CCC
Q psy535 10 TRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-TPTVQYLPFRLQGVVQCHIKAN-PTF 86 (460)
Q Consensus 10 ~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~ 86 (460)
++..+... +.|.|.+++.+|+|.|.|.|.+..+.. ...+.|+|+.+|.... .+. .+..|+.+ |.|.+.+. |.+
T Consensus 50 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~~~~~ltV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~ 125 (210)
T 1gsm_A 50 GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQLLVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVD 125 (210)
T ss_dssp CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCC
T ss_pred CcEEecCCccEEEECccCcccCceEEEEEEeCCCce-EEEEEEEEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCC
Confidence 44444433 489999999999999999999987663 7789999999887543 443 55567778 99999986 432
Q ss_pred ---CeEEEeeCCeecCcccc-c-cE-------------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 87 ---QYVTWTKDKRLLEPYQT-K-DI-------------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 87 ---~~v~W~~~~~~~~~~~~-~-~~-------------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
.+|+|+||+.++..... . .. ...-.++|.+.....+|.+.|+|+|.+........
T Consensus 126 ~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~~ 198 (210)
T 1gsm_A 126 PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELS 198 (210)
T ss_dssp TTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEEE
T ss_pred CCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCccc
Confidence 47999999999854221 1 11 01111234444666677799999998876443333
No 445
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.57 E-value=5.2e-14 Score=120.51 Aligned_cols=257 Identities=13% Similarity=0.115 Sum_probs=102.1
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
.+.|....+.+|+++.|+|.+.. +.+..+.|.-. +..+.. ... ....|.|.++..+ |.|+|++.. .|
T Consensus 3 ~v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~-~g~-----~~~~~~l~~v~~~--~~y~C~~~~-~~- 71 (291)
T 1mq8_A 3 SVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLL-PGN-----NRKVYELSNVQED--SQPMCYSNC-PD- 71 (291)
T ss_dssp EEECSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCC-SCS-----SEEEEEEESCCSC--CCCEEEEEC-SS-
T ss_pred EEeCCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCccccc-CCC-----ceEEEEEEecccC--CeEEEEEEc-CC-
Confidence 35666778999999999999964 44445888641 111100 000 1114788888743 469999964 33
Q ss_pred cceeeEEEEEeeCCCcee-eCCCcccccCCCCeEEEEeeeeccCCCCCC--eeEEEcCCCccCCcccEE--EecceEEEc
Q psy535 138 QGSSGQMEVLVRKPPAFT-IKPEAMYQRKVGESVDMHCEAQEAEGTQKP--TITWQRRDGVALPKNRVK--IVGGNITIE 212 (460)
Q Consensus 138 ~~~~~~~~v~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~~~~~--~~~~~l~i~ 212 (460)
......+.|.|..+|... +.+... .+..|+.++|.|.+. .+.|.. .+.|++++. .+...... .....+.+.
T Consensus 72 ~~~~~~v~l~V~~~P~~v~I~~~~~-~~~~G~~~~LtC~v~--g~~P~~~l~itW~kg~~-~l~~~~~~~~~~~~~l~~~ 147 (291)
T 1mq8_A 72 GQSTAKTFLTVYWTPERVELAPLPS-WQPVGKNLTLRCQVE--GGAPRANLTVVLLRGEK-ELKREPAVGEPAEVTTTVL 147 (291)
T ss_dssp CEEEEECEEEECBCCSCCCBCCCCS-BCCSSCCCEEEEEEC--CCBSTTTEEEEEESSSS-EEEEEECCBTTEEEEEECC
T ss_pred ccEEEEEEEEEecCCCCCEEecCCc-cccCCCCEEEEEEec--CccCCCCcEEEEEECCE-EeecccCCCCCceEEEEee
Confidence 346667778888776533 222222 478899999999994 455554 589999553 33211100 012245656
Q ss_pred cccceeceEEEEEEecccce--------eeeeeEEEEecCCCCCCCcee--eeeecceEEEEeecCCCCCCCceeeEEEE
Q psy535 213 GLRRVDFGYYECVVSNEVAT--------IVQAAQLVVEGTQPHAPYNIT--GVATEFSVTLEWLPGYSGGPDLKQNYVIW 282 (460)
Q Consensus 213 ~~~~~~~g~y~C~a~n~~g~--------~~~~~~l~v~~~~p~~p~~~~--~~~~~~~~~l~w~~~~~~~~~~~~~~~~~ 282 (460)
.....+.+.|+|.|.|..+. .+....+.|...|+..+.... ....+..++|+|. ..+.+++....+.|
T Consensus 148 ~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~--~~g~~P~~~~~v~w 225 (291)
T 1mq8_A 148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCS--LDGLFPVSEAQVHL 225 (291)
T ss_dssp CSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------
T ss_pred eeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEE--cCCCCCCcccEEEE
Confidence 55666667999999987653 233345555543333232211 1234678888887 34444431122444
Q ss_pred EEecCCCCeeeeeccCCCCceEEEccC---cc--CccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535 283 YREQGNKDWLPIPVTPPGSTQITINRL---TP--ATTYEFQVVGKNELGDGMLSNIVVVK 337 (460)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~i~~l---~~--~~~~~~~~~a~n~~G~~~~s~~~~~~ 337 (460)
++++.... ..... ....+.+..+ .. ...|.|.|.|.|.......+..+.+.
T Consensus 226 ~~~g~~l~-~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~ 281 (291)
T 1mq8_A 226 ALGDQRLN-PTVTY---GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 281 (291)
T ss_dssp ------------------------------------------------------------
T ss_pred EECCEecC-ceeee---cCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEE
Confidence 44433211 11111 1223333333 23 44677888887744333344444443
No 446
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.57 E-value=6.7e-15 Score=126.70 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=89.6
Q ss_pred ceEEEee----CCeEEEeecCCCCCeeEEEEEEeCC-CCcceeeeEEEEec------CCeeEE-cceeeeecceeeEEEE
Q psy535 10 TRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGI-GEPQAAQAYLNVEF------PAKVTF-TPTVQYLPFRLQGVVQ 77 (460)
Q Consensus 10 ~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~ 77 (460)
+|+.+.. +++|.|.+++.+|+|.|+|.+.+.. .........|.|.. +|.+.. .+....+.+|+.++|.
T Consensus 88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~ 167 (268)
T 3pl6_D 88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV 167 (268)
T ss_dssp TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred CcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEE
Confidence 8999876 4589999999999999999999742 22224456777765 455433 3444456679999999
Q ss_pred EEEecCCCCC-eEEEeeCCeecCccc--------------cccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCCc
Q psy535 78 CHIKANPTFQ-YVTWTKDKRLLEPYQ--------------TKDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGTQ 138 (460)
Q Consensus 78 C~~~~~~~~~-~v~W~~~~~~~~~~~--------------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~~ 138 (460)
|.+.+.++++ .++|+++|..+.... ...+. ....|.|.....+| +|.|+|.|.+.....
T Consensus 168 C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~--~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~ 242 (268)
T 3pl6_D 168 CLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYS--LSSRLRVSATFWQNPRNHFRCQVQFYGLSE 242 (268)
T ss_dssp EEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEE--EEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred EEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEE--EEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence 9999865543 799999998875321 11111 11346777777777 999999999876543
No 447
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=124.47 Aligned_cols=127 Identities=18% Similarity=0.237 Sum_probs=86.7
Q ss_pred ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-----------------------eEE
Q psy535 8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-----------------------VTF 61 (460)
Q Consensus 8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~ 61 (460)
.++|+.+..++ +|.|.+++.+|+|.|+|.+.+..+......+.|.|..++. ...
T Consensus 77 ~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~ 156 (268)
T 1x9q_A 77 VPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLD 156 (268)
T ss_dssp SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEE
T ss_pred CcccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEE
Confidence 35788886543 8999999999999999999987543223445677654321 123
Q ss_pred cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC-----------------ccccccEEEeec-----CeEEE
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE-----------------PYQTKDIVVMQN-----GSLLF 116 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~-----~~l~i 116 (460)
.+....+.+|++++|.|.+.+.++ .+.+.|+|++ ..+. .....++....+ ..|.|
T Consensus 157 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 236 (268)
T 1x9q_A 157 ETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQM 236 (268)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred CCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEE
Confidence 345567889999999999988753 2579999852 2210 011234444322 46999
Q ss_pred eecCCCCCeEEEEEEEcC
Q psy535 117 TRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 117 ~~~~~~d~G~y~C~~~~~ 134 (460)
.+++.+|+|.|+|.+.+.
T Consensus 237 ~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 237 NNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp CSCCGGGCEEEEEEEEET
T ss_pred CCCCHHHCEEEEEEEccC
Confidence 999999999999999863
No 448
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.56 E-value=1.9e-14 Score=104.86 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=73.5
Q ss_pred CCCCCCcceEEEeec-ceEEEEecCCCCCCccc----eEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeee
Q psy535 341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLI----QYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415 (460)
Q Consensus 341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i----~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (460)
.+|.+|.++++...+ ++|.|+|.+|...++.+ .+|.|+|+.... ....+.
T Consensus 7 ~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~~~~~~~~Y~v~y~~~~~-----------------------~~~~~~-- 61 (113)
T 1x5j_A 7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP-----------------------ANTKYK-- 61 (113)
T ss_dssp CCCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSS-----------------------SSCCCE--
T ss_pred CCCCCCcceEEEEecCCEEEEEecCCCCccccccCcCceEEEEEEECCC-----------------------CCeEEE--
Confidence 457899999999887 69999999987655444 499999986311 000111
Q ss_pred ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
......+.+.|.+|+|++.|.|+|+|+|..|.|++|..+.++|+
T Consensus 62 -~~~~~~~~~~i~gL~P~T~Y~f~V~A~~~~G~g~~S~~v~~~T~ 105 (113)
T 1x5j_A 62 -NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF 105 (113)
T ss_dssp -ECCBCSSEEEEESCCTTCEECCEEEEECSSCBCCCCCCCCEECC
T ss_pred -EEecCcCEEEeCCCCCCcEEEEEEEEecCCccCCCcccEEeecc
Confidence 11235678999999999999999999999999999999999985
No 449
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.56 E-value=3.3e-14 Score=119.06 Aligned_cols=169 Identities=14% Similarity=0.150 Sum_probs=101.9
Q ss_pred EEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--ee---cC-----------ccccccEEEeec-----CeEEEe
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RL---LE-----------PYQTKDIVVMQN-----GSLLFT 117 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~~-----------~~~~~~~~~~~~-----~~l~i~ 117 (460)
...|....+.+|++++|.|.+.+.. ....+.|+|.. .. +. .....++....+ .+|.|.
T Consensus 5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (230)
T 1ypz_F 5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY 84 (230)
T ss_dssp ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEEC
Confidence 3456677888999999999997641 22369999842 11 10 001244444432 269999
Q ss_pred ecCCCCCeEEEEEEEcC--CCCcceeeEEEEEee---------CCCceeeC-CCcccccCCCCeEEEEeeeeccCCCCC-
Q psy535 118 RVNQNHQGRYTCTPYNA--HGTQGSSGQMEVLVR---------KPPAFTIK-PEAMYQRKVGESVDMHCEAQEAEGTQK- 184 (460)
Q Consensus 118 ~~~~~d~G~y~C~~~~~--~g~~~~~~~~~v~v~---------~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~p~- 184 (460)
+++.+|+|.|.|.+.+. ...........|.|. .+|...+. |... .+..|+.++|.|.+. ...|.
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~-~v~~g~~~~L~C~~~--g~~P~~ 161 (230)
T 1ypz_F 85 SLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVA-ETNLHKTGTYLCLLE--AFFPDV 161 (230)
T ss_dssp SCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHH-HHHHHSCEEEEEEEE--EESSCC
T ss_pred cCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCch-hhccCCcceEEEEEe--eecCCC
Confidence 99999999999999874 111111112234443 23433322 2222 345688999999983 33465
Q ss_pred CeeEEEcCCCccCCcc---cEEEe------cceEEEccccceeceEEEEEEeccccee
Q psy535 185 PTITWQRRDGVALPKN---RVKIV------GGNITIEGLRRVDFGYYECVVSNEVATI 233 (460)
Q Consensus 185 ~~~~W~~~~~~~~~~~---~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 233 (460)
+.+.|++.++..+... ..... ...|.|..... .|.|+|.+.|..+..
T Consensus 162 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~--~~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 162 IRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM--GKEHRCIVKHENNKG 217 (230)
T ss_dssp CEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT--TSCEEEEEECSSCTT
T ss_pred eEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC--CCEEEEEEEECCCCC
Confidence 5999998444433211 11111 23577776664 389999999976643
No 450
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-14 Score=102.15 Aligned_cols=93 Identities=28% Similarity=0.543 Sum_probs=74.8
Q ss_pred CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535 340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT 418 (460)
Q Consensus 340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (460)
..+|.+|.++.+...+ +++.|+|+++ .++.+.+|.|+|+..+.. ..|..+.
T Consensus 5 ~~~P~~P~~~~~~~~~~~sv~l~W~~~--~~~~i~~Y~v~~~~~~~~------------------------~~~~~~~-- 56 (106)
T 2dju_A 5 SSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTE------------------------GPFQEVD-- 56 (106)
T ss_dssp CCSCCCCEEEEEEEEETTEEEEEEECC--CSSCCSEEEEEEEETTCC------------------------SCCCCBC--
T ss_pred CcCCcCCCCcEEEeccCCEEEEEEcCC--CCCCceEEEEEEEECCCC------------------------CCeEEcc--
Confidence 3468999999998866 6999999988 367899999999976530 0122211
Q ss_pred CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus 57 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~~~~S~~~~~~T~ 98 (106)
T 2dju_A 57 GVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG 98 (106)
T ss_dssp CCCSSEEEEESCCTTCEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred CCCccEEEEeCCCCCcEEEEEEEEEeCCccCCCcccEEeEcC
Confidence 135678999999999999999999999999999999998874
No 451
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.56 E-value=2e-14 Score=138.25 Aligned_cols=166 Identities=17% Similarity=0.243 Sum_probs=109.3
Q ss_pred ceeeeecceeeEEEEEEE-ecCCCCCeEEEeeCCeecCc----------cccccEEEeecCeEEEeecCCCCCeEEEEEE
Q psy535 63 PTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRLLEP----------YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 131 (460)
.....+.+|++++|.|.+ .+.|.+ .|+|+|++..+.. ....+..+..+++|.|.+++.+|+|.|+|.+
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~ 451 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQ-RLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQA 451 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSC-EEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEE
T ss_pred hcccceecCCcEEEeeeecCCCCCc-eEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEE
Confidence 344567889999999999 565554 8999998763311 1134556667778999999999999999999
Q ss_pred EcCCCCcceeeEEEEEeeCCCce-eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE-----
Q psy535 132 YNAHGTQGSSGQMEVLVRKPPAF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI----- 204 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v~v~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~----- 204 (460)
.|..+.. ....+.|.|..+|.. .+.+........+..+.|.|.+. .+.|.|.+.|++++..+.. ..+..+
T Consensus 452 ~n~~~~~-~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~--~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~ 528 (581)
T 3o3u_N 452 MNRNGKE-TKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSE--GSYPAGTLSWHLDGKPLVPNEKGVSVKEQTR 528 (581)
T ss_dssp ECTTSCE-EEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEE--EEBSCCEEEEEETTEECCTTSTTEEEEEEEE
T ss_pred EcCCCce-eEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECC--CCCCCCeEEEEECCEECCCCCCeEEEEeeeE
Confidence 9988775 244556666554322 22222221233344556799983 3368999999995433221 122211
Q ss_pred ---------ecceEEEcccc-ceeceEEEEEEecccce
Q psy535 205 ---------VGGNITIEGLR-RVDFGYYECVVSNEVAT 232 (460)
Q Consensus 205 ---------~~~~l~i~~~~-~~~~g~y~C~a~n~~g~ 232 (460)
..++|.|..+. ..+.+.|+|.+.|..+.
T Consensus 529 ~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 529 RHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp ECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred EcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 11358888887 44478999999998643
No 452
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.56 E-value=7e-14 Score=117.89 Aligned_cols=167 Identities=13% Similarity=0.175 Sum_probs=100.4
Q ss_pred EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC-------------ccccccEEEee----cCeEEEeecC
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE-------------PYQTKDIVVMQ----NGSLLFTRVN 120 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~-------------~~~~~~~~~~~----~~~l~i~~~~ 120 (460)
...|....+.+|++++|.|.+.. +. ..+.|+|++ .... .....++.... +.+|.|.+++
T Consensus 3 ~q~p~~v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 3 TQSPRNKVAVTGGKVTLSCQQTN-NH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp EEECSEEEEETTCCEEEEEEESS-CC-SEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred ccCCCeeEEeCCCcEEEEEEeCC-CC-ceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 34577778899999999999854 33 479999853 1110 00123443332 2379999999
Q ss_pred CCCCeEEEEEEEcCCC---Ccc--eeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEE
Q psy535 121 QNHQGRYTCTPYNAHG---TQG--SSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITW 189 (460)
Q Consensus 121 ~~d~G~y~C~~~~~~g---~~~--~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W 189 (460)
.+|+|.|+|.+.+..+ ... ....+.|... .+|.+.+.+.....+..|+.++|.|.+ .+. |.+ .+.|
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~---~g~~P~~~~v~W 157 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLA---RGFFPDHVELSW 157 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEE---EEEBSCCEEEEE
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEE---eeEeCCCcEEEE
Confidence 9999999999998642 111 1223444321 256555433222245679999999999 453 654 9999
Q ss_pred EcCCCccCCccc-----EEEecceEEEc---cccce---e-ceEEEEEEecccc
Q psy535 190 QRRDGVALPKNR-----VKIVGGNITIE---GLRRV---D-FGYYECVVSNEVA 231 (460)
Q Consensus 190 ~~~~~~~~~~~~-----~~~~~~~l~i~---~~~~~---~-~g~y~C~a~n~~g 231 (460)
++++........ ....++.+.+. .+... | .+.|+|.+.|...
T Consensus 158 ~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 158 WVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp EETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred EECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 994433322211 11223333321 22222 3 5789999998643
No 453
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=104.28 Aligned_cols=92 Identities=20% Similarity=0.317 Sum_probs=73.1
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC--eEEEeecCCCCCeEEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~ 132 (460)
.+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+............++ .|.|.++..+|+|.|+|.|.
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 82 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK 82 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCC-EEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCC-EEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence 46677777888889999999999999998776 7999999999876444444444444 79999999999999999999
Q ss_pred cCCCCcceeeEEEEEee
Q psy535 133 NAHGTQGSSGQMEVLVR 149 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v~ 149 (460)
|..|..... +.|.|.
T Consensus 83 n~~g~~~~~--~~l~V~ 97 (100)
T 2kdg_A 83 NRAGEATFT--VQLDVL 97 (100)
T ss_dssp ETTEEEEEE--EEEEEE
T ss_pred cCCCeEEEE--EEEEEE
Confidence 999885444 444443
No 454
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.2e-15 Score=105.46 Aligned_cols=92 Identities=30% Similarity=0.442 Sum_probs=75.2
Q ss_pred CCCCCCcceEEEeec-ceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535 341 PKPGPPRNVSVTEVN-NGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417 (460)
Q Consensus 341 ~~P~~p~~~~~~~~~-~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (460)
.+|.+|.++.+...+ +++.|+|++| ...++.+.+|.|+|+..+.. .|..+
T Consensus 7 ~pp~~P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~-------------------------~~~~~-- 59 (103)
T 2edy_A 7 GPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQ-------------------------QELQN-- 59 (103)
T ss_dssp CCSCCCEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSC-------------------------CEEEE--
T ss_pred CCCCCCeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCC-------------------------ccEEE--
Confidence 346799999998776 6999999999 45678999999999976530 11111
Q ss_pred CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
....+.+.|.+|.|++.|.|+|+|+|..|.|++|+++.++|+
T Consensus 60 -~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ 101 (103)
T 2edy_A 60 -ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTM 101 (103)
T ss_dssp -EESSSCCEECSCCTTCCEEEECCEECSSCBCCCCCCCCCCCC
T ss_pred -cCCcceEEEcCCCCCCEEEEEEEEECCCCCCCCCCCEEEEec
Confidence 135678899999999999999999999999999999999885
No 455
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=105.74 Aligned_cols=91 Identities=22% Similarity=0.423 Sum_probs=72.5
Q ss_pred CCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535 341 PKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420 (460)
Q Consensus 341 ~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (460)
.+|.+|.++++...++++.|+|++|...++.|.+|.|+|+....|.. ......
T Consensus 16 ~~P~~P~~l~~~~~~~sv~l~W~~P~~~ng~i~gY~i~y~~~~~~~~---------------------------~~~~~~ 68 (116)
T 2edb_A 16 QVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAE---------------------------TVRVDS 68 (116)
T ss_dssp SCCCCCSCEEEEECSSCEEEEECCCSCTTBCCCEEEEEEEESSTTSE---------------------------EEEEET
T ss_pred CCCCCCCCeEEEECCCEEEEEEcCCCCCCCceeEEEEEEEeCCCCeE---------------------------EEEeCC
Confidence 56899999999887789999999998778899999999986332110 011124
Q ss_pred CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
..++++|.+|.|++.|.|+|+|+|..|.|+++. ..++|
T Consensus 69 ~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~~~-~~~~T 106 (116)
T 2edb_A 69 KQRYYSIERLESSSHYVISLKAFNNAGEGVPLY-ESATT 106 (116)
T ss_dssp TCCEEEECSCCSSSBEEEEEEEEETTEECSCEE-ECCBC
T ss_pred CeeEEEeCCCCCCCEEEEEEEEEeCCccCCCCc-ceeec
Confidence 678999999999999999999999999998765 34444
No 456
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.55 E-value=1e-14 Score=120.08 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=82.9
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEE--EEecCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYL--NVEFPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTK 93 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~ 93 (460)
+.|.|.+++.+|+|.|+|.|.+..+.. ....+.+ .+..+|.+.+.+.......|+.++|.|.+.|. |++..|+|+|
T Consensus 68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k 147 (207)
T 2vol_A 68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWES 147 (207)
T ss_dssp EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEE
Confidence 479999999999999999999987753 1223333 44567777665544333458899999999985 4435899999
Q ss_pred CCeecCccccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535 94 DKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
+|..+............+++ |.|.....+|.|.|+|.|.|....
T Consensus 148 ~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 148 NGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp TTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred CCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 99987532222222334443 445555556899999999987643
No 457
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.8e-14 Score=101.57 Aligned_cols=93 Identities=18% Similarity=0.345 Sum_probs=75.5
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 134 (460)
.+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.. ...++....+++|.|.++..+|+|.|+|.|.|.
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 84 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLP-VISWLKEGFTFPG-RDPRATIQEQGTLQIKNLRISDTGTYTCVATSS 84 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCC-EEEEEESSSEESS-SCSSCEECTTCCEEEESCCTTTCCEEEEEEECS
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCC-EEEEEECCEECCC-CCCCEEEcCCCEEEEccCCcccCEEEEEEEEcC
Confidence 46777778888889999999999999998876 7999999988863 334555667788999999999999999999999
Q ss_pred CCCcceeeEEEEEeeCC
Q psy535 135 HGTQGSSGQMEVLVRKP 151 (460)
Q Consensus 135 ~g~~~~~~~~~v~v~~~ 151 (460)
.|..... +.|.|..+
T Consensus 85 ~g~~~~~--~~l~V~~~ 99 (100)
T 2edj_A 85 SGETSWS--AVLDVTES 99 (100)
T ss_dssp SCCCBCC--EEEEEESC
T ss_pred CCCEEEE--EEEEEecC
Confidence 8876554 44444444
No 458
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.55 E-value=4.1e-14 Score=127.70 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=105.5
Q ss_pred ecceeeEEEEEEEecC---CCCCeEEEeeCCeecCcccccc------EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 68 LPFRLQGVVQCHIKAN---PTFQYVTWTKDKRLLEPYQTKD------IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 68 ~~~g~~~~l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
+.+|++++|.|.+.+. |....|+|+|++..+....... -.......|.|..+..+|+|.|+|.+.+..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6779999999999987 4334799999986653111000 011123369999999999999999999877654
Q ss_pred ceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-C-CCeeEEEcCCCccCCccc----EEEec----
Q psy535 139 GSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-Q-KPTITWQRRDGVALPKNR----VKIVG---- 206 (460)
Q Consensus 139 ~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~~~~~~~~----~~~~~---- 206 (460)
.....+.+ .+..+|.+.+.+... ....|+.++|.|.+ .|. | .+.+.|++++. .+.... ....+
T Consensus 260 ~~~~~v~~~~~~~~~P~v~v~~~~~-~~~~g~~~~L~C~~---~g~~P~~i~v~W~k~g~-~~~~~~~~~~~~~~dgty~ 334 (376)
T 2aty_A 260 PIEKTISKTKGRPKAPQLYTIPPPK-EQMAKDKVSLTCMI---TDFFPEDITVEWQWNGQ-PAENYKNTQPIMNTNESYF 334 (376)
T ss_pred ceEEEEcCCCCCCcCCeEEeeCCCH-HHhcCCceEEEEEE---EEeECCCcEEEEEECCE-ECCCeEeCCceECCCCCEE
Confidence 34444433 455688887777664 34568899999999 554 3 46899999554 332211 00112
Q ss_pred --ceEEEccccceeceEEEEEEecccc
Q psy535 207 --GNITIEGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 207 --~~l~i~~~~~~~~g~y~C~a~n~~g 231 (460)
..|.|......+.|.|+|.+.|...
T Consensus 335 ~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 335 VYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred EEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 2355655555678999999998643
No 459
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.54 E-value=3.9e-14 Score=101.32 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=70.1
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC--eEEEeecCCCCCeEEEEEEEc
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~~ 133 (460)
+|.+...+....+.+|+++.|.|.+.|.|.+ .+.|++++..+.............+ .|.|.++..+|+|.|+|.|.|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 83 (99)
T 1g1c_A 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 83 (99)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCceEecCcceEEcCCCcEEEEEEEEEeCCC-EEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence 5677777888889999999999999998776 7999999999874322222222333 699999999999999999999
Q ss_pred CCCCcceeeEEEE
Q psy535 134 AHGTQGSSGQMEV 146 (460)
Q Consensus 134 ~~g~~~~~~~~~v 146 (460)
..|.......+.|
T Consensus 84 ~~g~~~~~~~l~V 96 (99)
T 1g1c_A 84 IAGETSSHAFLLV 96 (99)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEE
Confidence 9988655444443
No 460
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.54 E-value=6e-14 Score=103.19 Aligned_cols=97 Identities=18% Similarity=0.191 Sum_probs=76.0
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~ 131 (460)
.||.|...+....+.+|+++.|.|.+.+.|.+ .++|+|++..+... .++.+.. ...|.|.++..+|+|.|+|.|
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQES--EHMKVENSENGSKLTILAARQEHCGCYTLLV 82 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCCCS--SSEEEEECSSEEEEEETTCCTTTCEEEEEEE
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCC-EEEEEECCEECcCC--CCEEEEEcCCEEEEEECCCChhcCEEEEEEE
Confidence 46777778888889999999999999998776 79999999988642 3444433 347999999999999999999
Q ss_pred EcCCCCcceeeEEEEEeeCCCceee
Q psy535 132 YNAHGTQGSSGQMEVLVRKPPAFTI 156 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v~v~~~p~~~~ 156 (460)
.|..|.... .+.|.|..+|....
T Consensus 83 ~N~~g~~~~--~~~l~V~~~p~~P~ 105 (114)
T 2cqv_A 83 ENKLGSRQA--QVNLTVVDKPDPPA 105 (114)
T ss_dssp ECSSCEEEC--CEEEEEECSCSCCC
T ss_pred EECCCcEEE--EEEEEEECCCCCCC
Confidence 999886544 55666666665433
No 461
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1
Probab=99.54 E-value=2.5e-14 Score=104.50 Aligned_cols=99 Identities=24% Similarity=0.490 Sum_probs=65.0
Q ss_pred CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEc---CCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTD---GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417 (460)
Q Consensus 342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (460)
+|++|. +...+ ++++|+|.+|.+++++|++|.|+|+.. +.|..+..... + ....| ..
T Consensus 5 pP~~P~---v~~~~~~sv~L~W~~P~~~G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~------~-------~~~~~---~~ 65 (115)
T 2ic2_A 5 PPTPPN---VTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP------Y-------GKPKW---NS 65 (115)
T ss_dssp CCCCCE---EEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEE------C-------CSCSC---SS
T ss_pred CCCcCE---eEEEeCCEEEEEEcCCCCCCCCCceEEEEEEECCCCCCceECccccc------c-------ccccc---cc
Confidence 477776 44544 699999999988788999999999976 23543322000 0 00000 00
Q ss_pred CCCCcceEEECCCCcCceEEEEEEEeecCCCC---CCCceeEeec
Q psy535 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKT 459 (460)
Q Consensus 418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s---~~s~~~~~~T 459 (460)
.....++++|.+|.|++.|+|||+|+|..|.| ++|..+.++|
T Consensus 66 ~~~~~~~~~v~~L~p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~~~ 110 (115)
T 2ic2_A 66 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110 (115)
T ss_dssp SSEEEEEEEECSCCSSEEEEEEEEEEETTSCEEECCCCCCEEECC
T ss_pred ccCceeEEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCCCCEEeCC
Confidence 11234678999999999999999999999975 4555555544
No 462
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.54 E-value=1.7e-14 Score=122.01 Aligned_cols=136 Identities=15% Similarity=0.208 Sum_probs=90.9
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC-C-----cceeeeEEEEec-------CCeeEEc-ceeeee
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG-E-----PQAAQAYLNVEF-------PAKVTFT-PTVQYL 68 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~-~-----~~~~~~~l~v~~-------~p~~~~~-~~~~~~ 68 (460)
.++|+.+..+ ++|.|.+++.+|+|.|.|.+.+... . .....+.|.|.. +|.+.+. |....+
T Consensus 65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~ 144 (242)
T 1hxm_B 65 PSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAET 144 (242)
T ss_dssp CTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGG
T ss_pred cCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhc
Confidence 5689998752 4899999999999999999998631 1 112346788875 2333322 333445
Q ss_pred cceeeEEEEEEEecC-CCCCeEEEeeCCe-ecCccccccEEEe-----ecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535 69 PFRLQGVVQCHIKAN-PTFQYVTWTKDKR-LLEPYQTKDIVVM-----QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141 (460)
Q Consensus 69 ~~g~~~~l~C~~~~~-~~~~~v~W~~~~~-~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~ 141 (460)
.+|+.++|.|.+.+. |.++.|.|++++. .+........... ..+.|.|.++.. | |.|+|.|.|..+.....
T Consensus 145 ~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~ 222 (242)
T 1hxm_B 145 KLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVD 222 (242)
T ss_dssp GSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSC
T ss_pred ccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCce
Confidence 579999999999986 5445899999987 5532111111111 113577876664 5 99999999988876555
Q ss_pred eEEE
Q psy535 142 GQME 145 (460)
Q Consensus 142 ~~~~ 145 (460)
..+.
T Consensus 223 ~~~~ 226 (242)
T 1hxm_B 223 QEII 226 (242)
T ss_dssp EEEE
T ss_pred eEee
Confidence 4443
No 463
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.54 E-value=3e-14 Score=104.02 Aligned_cols=91 Identities=20% Similarity=0.241 Sum_probs=67.5
Q ss_pred CCCCcceEEEeec-ceEEEEecCCCCCC----cc-ceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535 343 PGPPRNVSVTEVN-NGFVISWQPPLERA----SL-IQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416 (460)
Q Consensus 343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~----~~-i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (460)
|.+|..+.+.... ++|.|+|++|.+.+ .. |.+|.|+ +.+.. ...|..+.
T Consensus 16 p~~P~~p~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve-~~~~~------------------------~~~~~~v~ 70 (120)
T 1wfu_A 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE-EEDPK------------------------MHSYGVIY 70 (120)
T ss_dssp CCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEE-EECTT------------------------TCCEEEEE
T ss_pred CCCCCCceeceEECCEEEEEECCCccCCccCCCCceEEEEEE-EecCC------------------------CCceEEEe
Confidence 5555555555555 69999999998754 34 9999999 43211 11232222
Q ss_pred cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
. ...+.++|.+|.|++.|.|||+|+|..|.|++|+.+.++|.
T Consensus 71 ~--~~~t~~~v~gL~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~ 112 (120)
T 1wfu_A 71 T--GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATT 112 (120)
T ss_dssp E--ESCSEEEEESCCTTCEEEEEEEEECSSSCEEECCCEEEECC
T ss_pred c--CCccEEEECCCCCCCEEEEEEEEECCCCCCCCCccEeeEcC
Confidence 1 23567999999999999999999999999999999999884
No 464
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.54 E-value=7.8e-14 Score=99.87 Aligned_cols=90 Identities=20% Similarity=0.328 Sum_probs=71.3
Q ss_pred CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420 (460)
Q Consensus 342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (460)
.|.+|.++++...+ +++.|+|++|...++.+.+|.|+|+..+.- +..... ....
T Consensus 7 ~~~~P~~l~v~~~t~~Sv~lsW~~p~~~~g~i~~Y~v~y~~~~~~----------------------~~~~~~---~v~~ 61 (103)
T 3t04_D 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGD----------------------SPVQEF---TVPG 61 (103)
T ss_dssp CCCCCCSCEEEEEETTEEEEECTTTTTTSCCCCEEEEEEEETTCS----------------------SCCEEE---EEET
T ss_pred cCCCCceeEEEecCCCEEEEEccCCCCCCCccceEEEEEEECCCC----------------------CccEEE---EcCC
Confidence 58899999998877 699999999987788999999999975320 000011 1124
Q ss_pred CcceEEECCCCcCceEEEEEEEeec--CCCCCCCceeEe
Q psy535 421 GSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVV 457 (460)
Q Consensus 421 ~~~~~~i~~L~p~~~Y~~~v~a~n~--~G~s~~s~~~~~ 457 (460)
..++++|.+|.|++.|.|+|+|.|. .|.|+ |.++.+
T Consensus 62 ~~ts~~l~~L~p~t~Y~~~V~A~~~~~~G~~~-S~p~~~ 99 (103)
T 3t04_D 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEP-NSPISI 99 (103)
T ss_dssp TCCEEEECSCCTTCCEEEEEEEESCCCTTCCC-SCCEEE
T ss_pred CcCEEEeCCCCCCCEEEEEEEEEeCCCCCCCC-CCCEEE
Confidence 5789999999999999999999999 99998 777654
No 465
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.54 E-value=3.6e-14 Score=103.10 Aligned_cols=94 Identities=23% Similarity=0.373 Sum_probs=72.2
Q ss_pred ccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535 338 TKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416 (460)
Q Consensus 338 ~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (460)
+.+.+|.+|. +.+...+ +++.|+|++|...++.+.+|.|+|+..+. ..|..+
T Consensus 3 T~~~~P~~p~-~~v~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~-------------------------~~~~~~- 55 (107)
T 2dn7_A 3 SGSSGPGRPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADE-------------------------ARPNTI- 55 (107)
T ss_dssp TCCCCCCCCE-EEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTC-------------------------SSCEEE-
T ss_pred CCCCCCCCCc-EeEEecCCCEEEEEECCCCCCCCceeEEEEEEEECCC-------------------------CCCEEE-
Confidence 3455687777 6666555 69999999998778899999999997543 012111
Q ss_pred cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459 (460)
Q Consensus 417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T 459 (460)
......++++|.+|.|++.|.|+|+|+|..|.|++|. ..+.|
T Consensus 56 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T 97 (107)
T 2dn7_A 56 DFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFE-KEIRT 97 (107)
T ss_dssp EEETTCCEEEEECCCTTCEEEEEEEEEETTEEEEEEE-EEEEC
T ss_pred EeCCCccEEEeCCCCCCCEEEEEEEEEcCCcccCCee-eEEeC
Confidence 1124667899999999999999999999999999998 45555
No 466
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.54 E-value=5.2e-14 Score=120.43 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=84.3
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEecC-----------------CeeEEcceeeeecceeeEEEEE
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEFP-----------------AKVTFTPTVQYLPFRLQGVVQC 78 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~-----------------p~~~~~~~~~~~~~g~~~~l~C 78 (460)
++|.|.+++.+|+|.|+|.+.+..+. .......|.|..+ +.+...|....+.+|++++|.|
T Consensus 79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C 158 (259)
T 3omz_A 79 LRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNC 158 (259)
T ss_dssp CEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECC
T ss_pred EEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEE
Confidence 47999999999999999999987652 2244567777653 4556667778899999999999
Q ss_pred EEecCCCCCeEEEeeCCe--ecCc----------cccccEEEee-----cCeEEEeecCCCCCeEEEEEEEc
Q psy535 79 HIKANPTFQYVTWTKDKR--LLEP----------YQTKDIVVMQ-----NGSLLFTRVNQNHQGRYTCTPYN 133 (460)
Q Consensus 79 ~~~~~~~~~~v~W~~~~~--~~~~----------~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~ 133 (460)
.+.+..+.+.+.|+|.+. .+.. ....++.... ...|.|.+++.+|+|.|+|.+.+
T Consensus 159 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 159 LYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp EEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred ECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 988753445899998431 1100 0123333331 23599999999999999999975
No 467
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.54 E-value=4.1e-14 Score=119.59 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=89.6
Q ss_pred ccceEEEeeC----CeEEEeecCCCCCeeEEEEEEeC--CCCcceeeeEEEEe------cCCeeEE-cceeeeecceeeE
Q psy535 8 LETRVVIKKD----GTLVINPVGSDDSGLYMCEVSNG--IGEPQAAQAYLNVE------FPAKVTF-TPTVQYLPFRLQG 74 (460)
Q Consensus 8 ~~~r~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~ 74 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.+.+. ..........|.|. .+|.+.. .+....+.+|+.+
T Consensus 61 ~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v 140 (240)
T 3q5y_A 61 LPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKA 140 (240)
T ss_dssp CCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEE
T ss_pred cCCeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCce
Confidence 3478888764 38999999999999999999832 22222344677776 3455443 3444455678999
Q ss_pred EEEEEEecC-CCCCeEEEeeCCeecCccccc--cEEEeecC------eEEEeecCCCC-CeEEEEEEEcCCCCc
Q psy535 75 VVQCHIKAN-PTFQYVTWTKDKRLLEPYQTK--DIVVMQNG------SLLFTRVNQNH-QGRYTCTPYNAHGTQ 138 (460)
Q Consensus 75 ~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~------~l~i~~~~~~d-~G~y~C~~~~~~g~~ 138 (460)
+|.|.+.+. |++..+.|+++|..+...... ......++ .|.|.....+| .|.|+|.|.|.....
T Consensus 141 ~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~ 214 (240)
T 3q5y_A 141 TLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 214 (240)
T ss_dssp EEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred EEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 999999984 444379999999988532111 11222233 38888888888 779999999865443
No 468
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=105.06 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCCCCc-ceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535 342 KPGPPR-NVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419 (460)
Q Consensus 342 ~P~~p~-~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (460)
+|.+|. ++.....+ +++.|+|++|.+.+++|.+|.|+|+..+. ..|..+. .
T Consensus 9 ~P~~P~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~-------------------------~~~~~~~--~ 61 (110)
T 2db8_A 9 VPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNG-------------------------GQFREVY--V 61 (110)
T ss_dssp CCCCCBCCCCCCSCSSSEEEECCBCCTTCCSCCSEEEEEECCSSS-------------------------SCCEEEE--E
T ss_pred CCCCccccceeeccCCCEEEEEECCCCCCCCCccEEEEEEEeCCC-------------------------CceEEEE--e
Confidence 344443 34333333 69999999998877899999999986431 1122221 1
Q ss_pred CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460 (460)
Q Consensus 420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~ 460 (460)
...+.++|.+|.|++.|.|||+|+|..|.|++|+.+.++|.
T Consensus 62 ~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~ 102 (110)
T 2db8_A 62 GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTS 102 (110)
T ss_dssp ESCSCEEEECCCSSSCCEEEEEEECSSCBCCCCSCEECCCC
T ss_pred CCcCEEEECCCCCCCEEEEEEEEEeCCcCCCCCCCEEEEcC
Confidence 24678999999999999999999999999999999998874
No 469
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.53 E-value=3.1e-14 Score=105.31 Aligned_cols=96 Identities=29% Similarity=0.436 Sum_probs=76.3
Q ss_pred CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535 340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT 418 (460)
Q Consensus 340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (460)
..+|.+|.++++.... +++.|+|+++.+.++++.+|.|+|+..+. ...|..+..
T Consensus 13 ~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~------------------------~~~~~~~~~- 67 (117)
T 1uem_A 13 SDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSV------------------------SNSWQTVAN- 67 (117)
T ss_dssp CCSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTT------------------------EEEEEEEEE-
T ss_pred CCCccCCCCCEEEEecCCEEEEEEeCCCCCCcCceEEEEEEEECCC------------------------CCceeEccc-
Confidence 4568999999998766 69999999998778899999999997531 123333221
Q ss_pred CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE-eecC
Q psy535 419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTK 460 (460)
Q Consensus 419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~-~~T~ 460 (460)
....+.+.|.+|.|++.|.|+|+|+|..|.|++|.... ++|+
T Consensus 68 ~~~~~~~~i~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~v~t~ 110 (117)
T 1uem_A 68 HVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110 (117)
T ss_dssp EECSSEEEECSCCTTCEEEEEEEEEETTEEEEECCCCCCEECC
T ss_pred ccCcCEEEECCCCCCCEEEEEEEEECCCccCCCcCCCccEEcc
Confidence 13567899999999999999999999999999988776 6663
No 470
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Probab=99.53 E-value=1.6e-13 Score=114.42 Aligned_cols=182 Identities=15% Similarity=0.161 Sum_probs=117.2
Q ss_pred CCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeee-----cc-CCCCceEEE--ccCccCccEEEE
Q psy535 248 APYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP-----VT-PPGSTQITI--NRLTPATTYEFQ 318 (460)
Q Consensus 248 ~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~i--~~l~~~~~~~~~ 318 (460)
.|.++.+. .....+.++|.++...+..+ ..|.+.|+..+. .|.... .. ......+.+ .++.....|.|+
T Consensus 23 ~P~nl~C~~~~~~~l~C~W~~~~~~~~~~-~~y~l~y~~~~~-~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~~~ 100 (227)
T 1eer_B 23 GPEELLCFTERLEDLVCFWEEAASAGVGP-GQYSFSYQLEDE-PWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELR 100 (227)
T ss_dssp STTSCEEEBSSSSCCEEEEEESCCSSCCT-TSEEEEEEETTS-CCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEEEE
T ss_pred CCcCCeEECCCCCEEEEEecCCCCCCCCC-ccEEEEEEcCCC-CceeccceeccCCCCCceEEEEeCCCcceeeEEEEEE
Confidence 56666643 34568999999877544333 578888876532 232221 00 111223343 356677889999
Q ss_pred EEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee--cceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCC
Q psy535 319 VVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV--NNGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIR 394 (460)
Q Consensus 319 ~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~--~~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~ 394 (460)
+.|.|..+ .....+.... ..|.||.++++... ...+.|+|++|... ...+..|+|+|+..+.
T Consensus 101 V~a~~~~~----~~~~~~~~~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~~l~Yev~y~~~~~---------- 166 (227)
T 1eer_B 101 VTAASGAP----RYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQG---------- 166 (227)
T ss_dssp EEETTSCE----EEEEEECGGGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSCGGGEEEEEEEECCSS----------
T ss_pred EEecCCCc----cEEEEEEeeeeEccCcCcceEEEEcCCCCeEEEEEcCCCCcccccceEEEEEEEcCCC----------
Confidence 99976432 1122233333 24899999999875 35899999998653 2248999999996542
Q ss_pred CCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeec----CC-CCCCCceeEeecC
Q psy535 395 PEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE----LG-DGMLSNIVVVKTK 460 (460)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~----~G-~s~~s~~~~~~T~ 460 (460)
..|..........+.+.|.+|.|++.|.|+|+|... .| +|+||.++.++|+
T Consensus 167 ---------------~~w~~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~~~~~t~ 222 (227)
T 1eer_B 167 ---------------AGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTP 222 (227)
T ss_dssp ---------------SCCCCEEEECTTCCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCCEEEEC-
T ss_pred ---------------CCcEEEEEEecCceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCCEEEECc
Confidence 012110011234678999999999999999999975 23 4999999998874
No 471
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.53 E-value=5.9e-14 Score=116.34 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=85.7
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEec----CCeeEEcceeeeecceeeEEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVV 76 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l 76 (460)
..+|+.+..+ .+|.|.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+...+....+.+|+.++|
T Consensus 63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L 142 (215)
T 1c5d_H 63 LKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTL 142 (215)
T ss_dssp TGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEE
T ss_pred ccCcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEE
Confidence 4689998753 28999999999999999999986432 123446788863 455544332334567999999
Q ss_pred EEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEE----EeecCCCCCeEEEEEEEcCCCCc
Q psy535 77 QCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL----FTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 77 ~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~----i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
.|.+.+. |.+..|.|++++..+........ ...+.+. |.....+| |.|+|.|.|..+..
T Consensus 143 ~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~--~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~ 206 (215)
T 1c5d_H 143 GCLVKGYFPEPVTVTWNSGALSSDVHTFPAV--LQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASST 206 (215)
T ss_dssp EEEEEEEBSSCCEEEEGGGTTCCSCCBCCCE--EETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTE
T ss_pred EEEEeeeEcCCcEEEEccCCccCceEecCcc--cCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCc
Confidence 9999987 55448999999876432111111 1223222 22344456 99999999987764
No 472
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.53 E-value=2e-14 Score=122.07 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=90.9
Q ss_pred ccceEEEeeC----CeEEEeecCCCCCeeEEEEEEeCCCC---cceeeeEEEEec------CCeeEE-cceeeeecceee
Q psy535 8 LETRVVIKKD----GTLVINPVGSDDSGLYMCEVSNGIGE---PQAAQAYLNVEF------PAKVTF-TPTVQYLPFRLQ 73 (460)
Q Consensus 8 ~~~r~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~ 73 (460)
..+|+.+..+ ++|.|.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+.. .|....+.+|+.
T Consensus 63 ~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~ 142 (246)
T 4dzb_B 63 EKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQK 142 (246)
T ss_dssp CGGGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSE
T ss_pred cCCcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCc
Confidence 3488988753 38999999999999999999876431 123456777763 455443 344445667999
Q ss_pred EEEEEEEecCCCC-CeEEEeeCCeecCcccc--------------ccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCC
Q psy535 74 GVVQCHIKANPTF-QYVTWTKDKRLLEPYQT--------------KDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGT 137 (460)
Q Consensus 74 ~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~--------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~ 137 (460)
++|.|.+.+.+++ ..++|+++|..+..... ..+. ....|.|.....+| .|.|+|.|.|....
T Consensus 143 v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~--~~s~l~i~~~~~~d~~g~YtC~v~~~~~~ 220 (246)
T 4dzb_B 143 ATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA--LSSRLRVSATFWQNPRNHFRCQVQFYGLS 220 (246)
T ss_dssp EEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEE--EEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEE--EEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence 9999999987654 37999999998863211 1111 11237888888888 99999999987654
Q ss_pred c
Q psy535 138 Q 138 (460)
Q Consensus 138 ~ 138 (460)
.
T Consensus 221 ~ 221 (246)
T 4dzb_B 221 E 221 (246)
T ss_dssp T
T ss_pred C
Confidence 4
No 473
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.52 E-value=5.7e-14 Score=119.73 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=87.9
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEec----CCeeEEcceeeeecceeeEEE
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVV 76 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l 76 (460)
..+|+.+..+ ++|.|.+++.+|+|.|.|.+.+..+. .....+.|.|.. +|.+...+....+.+|+.++|
T Consensus 70 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L 149 (261)
T 2xqy_G 70 FKDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTL 149 (261)
T ss_dssp GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEE
T ss_pred cCCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEE
Confidence 3579998763 48999999999999999999986431 112346788864 355443332234567999999
Q ss_pred EEEEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535 77 QCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 77 ~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
.|.+.+. |.+..|.|++++..+.......+. ....+.|.|.++..+| |.|+|.|.|....
T Consensus 150 ~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 150 GCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp EEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred EEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 9999885 554489999998765321111111 1123468898888888 9999999985443
No 474
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A
Probab=99.52 E-value=5.5e-13 Score=122.30 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=95.4
Q ss_pred CCCCCCCceeeeeecceEEEEeecCCCCCC-----CceeeEEEEEEecCCCCeeeeeccCCCCceEEEc--cCccCccEE
Q psy535 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGP-----DLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN--RLTPATTYE 316 (460)
Q Consensus 244 ~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~~~~~~ 316 (460)
..|.||.++........+.|+|.++..... .....|.+.|+..+ ..|............+.+. +|.|+..|.
T Consensus 107 v~p~pP~~l~v~~~~~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~-~~w~~~~~~~~~~~~~~~~~~~L~p~~~Y~ 185 (419)
T 2gys_A 107 VQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ-DSWEDAAILLSNTSQATLGPEHLMPSSTYV 185 (419)
T ss_dssp BCCCCCEEEEEEEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETT-SCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred ccCCCCCceEEEecCCeEEEEECCCccccccchhccCceEEEEEEccCC-CChhheeeecccceEEEechhhcCCCCeEE
Confidence 367888888766555799999998755321 23478999999876 5665444321133455565 899999999
Q ss_pred EEEEEEcCCC------CCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEE
Q psy535 317 FQVVGKNELG------DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRT 381 (460)
Q Consensus 317 ~~~~a~n~~G------~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~ 381 (460)
++|+|.|..| ++.+|..+.+.+.+..|.+|.++.+.... +.+.+.|+++....+ ..+|.|+|+.
T Consensus 186 ~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~~~p~~l~c~~~~~~~l~c~W~~~~~~~~-~~~y~l~y~~ 256 (419)
T 2gys_A 186 ARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVAS-SVSFGLFYKP 256 (419)
T ss_dssp EEEEEEECTTSSCCBCCCCCCCCEEEECCCCCTTSCEEEEEEECSSSEEEEEEEEEHHHHT-TCCEEEEEEC
T ss_pred EEEEEecCCCCCCCcccCCCCCceeeeccccccCCCceEEEEECCceEEEeEEECCCCCCC-ceeEEEEEEe
Confidence 9999999642 35567888888888778899999988666 589999998632222 2446666654
No 475
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.52 E-value=4.7e-14 Score=102.53 Aligned_cols=94 Identities=23% Similarity=0.370 Sum_probs=75.3
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEE
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~ 130 (460)
..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.. ..++.+..++ .|.|.++..+|+|.|+|.
T Consensus 11 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 87 (107)
T 3irg_B 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQLAA--SERLSFPADGAEHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCC--CSSEECCEETTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCeeEcCCccEEEeCCCeEEEEEEEeecCCC-EEEEEECCeECCC--CCcEEEEeCCCEEEEEEccCCHHhCEEEEEE
Confidence 457788888888899999999999999998776 7999999998863 3455555555 799999999999999999
Q ss_pred EEcCCCCcceeeEEEEEeeCCC
Q psy535 131 PYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 131 ~~~~~g~~~~~~~~~v~v~~~p 152 (460)
|.|..|... ..+.|.|..+|
T Consensus 88 a~n~~g~~~--~~~~l~V~~~P 107 (107)
T 3irg_B 88 ARNAAGEAY--AAAAVTVLEPP 107 (107)
T ss_dssp EEETTEEEE--EEEEEEEEC--
T ss_pred EEcCCCcEE--EEEEEEEEcCC
Confidence 999888754 45566666554
No 476
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.52 E-value=5.2e-14 Score=100.67 Aligned_cols=89 Identities=18% Similarity=0.358 Sum_probs=70.3
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~ 131 (460)
.||.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... .++....++ +|.|.++..+|+|.|+|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 81 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKP-VVSWLRNRQPVRPDQ-RRFAEEAEGGLCRLRILAAERGDAGFYTCKA 81 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCBT-TEEEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCC-EEEEEECCEECCCCC-CEEEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence 35677777888889999999999999998876 799999999886532 333333333 5999999999999999999
Q ss_pred EcCCCCcceeeEEE
Q psy535 132 YNAHGTQGSSGQME 145 (460)
Q Consensus 132 ~~~~g~~~~~~~~~ 145 (460)
.|..|.......+.
T Consensus 82 ~N~~g~~~~~~~l~ 95 (99)
T 1u2h_A 82 VNEYGARQCEARLE 95 (99)
T ss_dssp EETTEEEEEEEEEE
T ss_pred EECCCceeEEEEEE
Confidence 99998865544433
No 477
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.52 E-value=2.7e-14 Score=121.10 Aligned_cols=132 Identities=14% Similarity=0.215 Sum_probs=89.4
Q ss_pred cccceEEEeeC----CeEEEeecCCCCCeeEEEEEEeCCC-----CcceeeeEEEEec------CCeeEE-cceeeeecc
Q psy535 7 SLETRVVIKKD----GTLVINPVGSDDSGLYMCEVSNGIG-----EPQAAQAYLNVEF------PAKVTF-TPTVQYLPF 70 (460)
Q Consensus 7 ~~~~r~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~ 70 (460)
...+|+.+..+ ++|.|.+++.+|+|.|+|.+.+..| ......+.|.|.. +|.+.. .+....+.+
T Consensus 59 ~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~ 138 (245)
T 3nfj_J 59 EVPQNLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISH 138 (245)
T ss_dssp SSCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHH
T ss_pred ccCCcEEEEecCCCEEEEEECCCChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccC
Confidence 34578888763 3899999999999999999998322 2223446777765 555543 333334556
Q ss_pred eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccc------------cEEEeecCeEEEeecCCCC-CeEEEEEEEcCCC
Q psy535 71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTK------------DIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHG 136 (460)
Q Consensus 71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~------------~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g 136 (460)
|+.++|.|.+.+. |++..++|+++|..+...... .-.......|.|.....+| .|.|+|.|.+...
T Consensus 139 g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~ 218 (245)
T 3nfj_J 139 TQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 218 (245)
T ss_dssp HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred CCceEEEEEEccCcCCCEEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCC
Confidence 9999999999985 434479999999988532110 0001112357888887778 6799999998765
Q ss_pred Cc
Q psy535 137 TQ 138 (460)
Q Consensus 137 ~~ 138 (460)
..
T Consensus 219 ~~ 220 (245)
T 3nfj_J 219 SE 220 (245)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 478
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.52 E-value=1.9e-14 Score=122.18 Aligned_cols=127 Identities=13% Similarity=0.158 Sum_probs=74.2
Q ss_pred ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC------------cceeeeEEEEec----CCeeEEcceee
Q psy535 8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE------------PQAAQAYLNVEF----PAKVTFTPTVQ 66 (460)
Q Consensus 8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~------------~~~~~~~l~v~~----~p~~~~~~~~~ 66 (460)
..+|+++..+ .+|.|.+++.+|+|.|.|.+.+..|. .....+.|.|.. +|.+...+...
T Consensus 64 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~ 143 (257)
T 3bn9_D 64 VKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSS 143 (257)
T ss_dssp GTTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC--
T ss_pred cCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcc
Confidence 4689998764 38999999999999999999987641 112345788864 45544333223
Q ss_pred eecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCC
Q psy535 67 YLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHG 136 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g 136 (460)
.+.+|+.++|.|.+.+. |.+..|+|++++..+......... ..+ +.|.|.++..+| |.|+|.|.|...
T Consensus 144 ~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~-~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~ 218 (257)
T 3bn9_D 144 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS 218 (257)
T ss_dssp ---------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEE-CTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred cccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeE-cCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence 35679999999999986 554489999998764321111111 122 247777777778 999999998543
No 479
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5e-14 Score=100.35 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=69.8
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~ 132 (460)
+|.|...+....+.+|+++.|.|.+ .|.+ .++|+|+|..+.. ..++.+..++ .|.|.++..+|+|.|+|.|.
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p-~v~W~k~g~~l~~--~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 81 (100)
T 2yuz_A 7 GLKILTPLTDQTVNLGKEICLKCEI--SENI-PGKWTKNGLPVQE--SDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD 81 (100)
T ss_dssp CCCCSBCCCCEEEETTSCCCEEEEC--SSCC-CEEEEETTEECCC--CSSEEEEECSSEEEEEESSCCGGGCSEEEEEES
T ss_pred CCEEeccCCceEEcCCCCEEEEEEe--CCCC-eEEEEECCEECCC--CCcEEEEEeCCEEEEEECCCChhhCEEEEEEEc
Confidence 5677777888899999999999999 5555 7999999999874 3455555554 69999999999999999999
Q ss_pred cCCCCcceeeEEEEEeeCCCc
Q psy535 133 NAHGTQGSSGQMEVLVRKPPA 153 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v~~~p~ 153 (460)
|. . .+....|.|..+|.
T Consensus 82 N~--~--~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 82 AY--N--VTLPAKVHVISGPS 98 (100)
T ss_dssp SS--C--CCEEEEEEEECCSC
T ss_pred CC--C--eeEEEEEEEeCCCC
Confidence 86 2 34455666666764
No 480
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=101.78 Aligned_cols=96 Identities=21% Similarity=0.345 Sum_probs=77.2
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC----eEEEeecCCCCCeEEEE
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C 129 (460)
..+|.|...|....+.+|++++|.|.+.+.|.+ .+.|++++..+... ..++.+..++ +|.|.++..+|+|.|+|
T Consensus 13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (116)
T 2kkq_A 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPP-KLFWKRNNEMVQFN-TDRISLYQDNTGRVTLLIKDVNKKDAGWYTV 90 (116)
T ss_dssp CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCC-EEEEEETTEECCCC-BTTEEEEECTTCEEEEEEEEECGGGCEEEEE
T ss_pred CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCC-EEEEEECCEECcCC-CCeEEEEeCCCCeEEEEECCCCcccCEEEEE
Confidence 457888888999999999999999999998876 89999999988642 3445444433 79999999999999999
Q ss_pred EEEcCCCCcceeeEEEEEeeCCCc
Q psy535 130 TPYNAHGTQGSSGQMEVLVRKPPA 153 (460)
Q Consensus 130 ~~~~~~g~~~~~~~~~v~v~~~p~ 153 (460)
.|.|..|... ..+.|.|..+|.
T Consensus 91 ~a~N~~G~~~--~~~~l~V~~~p~ 112 (116)
T 2kkq_A 91 SAVNEAGVTT--CNTRLDVTARPN 112 (116)
T ss_dssp EEEETTEEEE--EEEEEEEECCSC
T ss_pred EEEcCCCeEE--EEEEEEEeCCCC
Confidence 9999988754 455666666654
No 481
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=102.97 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=71.5
Q ss_pred EecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535 53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 53 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
+..+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+... ..........|.|.++..+|+|.|+|.|.
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 84 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPIQYA--RSTCEAGVAELHIQDALPEDHGTYTCLAE 84 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCC-CCEEEESSSBCSSC--CCEEETTEEEEEECSCCTTCCBCEEEEEE
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCC-eEEEEECCEECccc--ceEeeCCeEEEEECCCChhhCEEEEEEEE
Confidence 4567888888888889999999999999998876 79999999887632 22333333579999999999999999999
Q ss_pred cCCCCcceeeEEE
Q psy535 133 NAHGTQGSSGQME 145 (460)
Q Consensus 133 ~~~g~~~~~~~~~ 145 (460)
|..|....+..+.
T Consensus 85 N~~g~~~~~~~l~ 97 (99)
T 2yr3_A 85 NALGQVSCSAWVT 97 (99)
T ss_dssp CSSCEEEEECCEE
T ss_pred ECCCeEEEEEEEE
Confidence 9998765444443
No 482
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.51 E-value=1.5e-13 Score=115.36 Aligned_cols=172 Identities=11% Similarity=0.150 Sum_probs=98.7
Q ss_pred ceeeeecceeeEEEEEEEecCCC-CCeE--EEeeCC--ee---c--------------CccccccEEEeecC-----eEE
Q psy535 63 PTVQYLPFRLQGVVQCHIKANPT-FQYV--TWTKDK--RL---L--------------EPYQTKDIVVMQNG-----SLL 115 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v--~W~~~~--~~---~--------------~~~~~~~~~~~~~~-----~l~ 115 (460)
|....+.+|++++|.|.+.+.+. ...+ .|++.. .. + ......|+....+. +|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 86 (232)
T 3qhz_H 7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT 86 (232)
T ss_dssp ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence 33456788999999999976321 1234 999832 11 1 01112355444332 599
Q ss_pred EeecCCCCCeEEEEEEEcCCCC------cceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-C
Q psy535 116 FTRVNQNHQGRYTCTPYNAHGT------QGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-K 184 (460)
Q Consensus 116 i~~~~~~d~G~y~C~~~~~~g~------~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~ 184 (460)
|.+++.+|+|.|.|.+.+..+. ........|.|. .+|.+...+... .+..|+.++|.|.+. ...| .
T Consensus 87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~--~~~P~~ 163 (232)
T 3qhz_H 87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVK--DYFPEP 163 (232)
T ss_dssp ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC--------CEEEEEEEEE--EEBSSC
T ss_pred ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccc-cccCCCcEEEEEEEe--eEeCCC
Confidence 9999999999999999875311 111122234443 345554222222 356799999999994 2234 3
Q ss_pred CeeEEEcCCCccCCc---------ccEEEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 185 PTITWQRRDGVALPK---------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 185 ~~~~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
..+.|++++. .... .........|.|......+ |.|+|.+.|..+.......+
T Consensus 164 ~~v~W~~~g~-~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l 225 (232)
T 3qhz_H 164 VTVSWNSGAL-TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV 225 (232)
T ss_dssp CEEEEGGGTB-CTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEEC
T ss_pred eEEEEEECCE-ecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEe
Confidence 4688998543 2110 0111112357788887778 99999999987765544443
No 483
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.51 E-value=9.5e-14 Score=133.60 Aligned_cols=130 Identities=18% Similarity=0.325 Sum_probs=94.5
Q ss_pred cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceee-EEEEEEEecC-
Q psy535 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQ-GVVQCHIKAN- 83 (460)
Q Consensus 7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~-~~l~C~~~~~- 83 (460)
...+|+.+..+++|.|.+++.+|+|.|+|.+.|..+......+.|.|..+|. +.+.+....+.++.. +.|.|.+.+.
T Consensus 421 ~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~ 500 (581)
T 3o3u_N 421 PWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSY 500 (581)
T ss_dssp GGGGTSEECTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEB
T ss_pred CcCCcEEEcCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCC
Confidence 3477899988999999999999999999999998887546778899976443 233333333445544 4679999884
Q ss_pred CCCCeEEEeeCCeecCccccccEEE----ee---------cCeEEEeecC-CCCCeEEEEEEEcCCCCc
Q psy535 84 PTFQYVTWTKDKRLLEPYQTKDIVV----MQ---------NGSLLFTRVN-QNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 84 ~~~~~v~W~~~~~~~~~~~~~~~~~----~~---------~~~l~i~~~~-~~d~G~y~C~~~~~~g~~ 138 (460)
|.+ .|+|+++|..+.... ..+.+ .. .++|.|.+++ .++.|.|+|.|.|..+..
T Consensus 501 P~~-~i~W~~~g~~l~~~~-~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 501 PAG-TLSWHLDGKPLVPNE-KGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp SCC-EEEEEETTEECCTTS-TTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred CCC-eEEEEECCEECCCCC-CeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 655 899999999986532 22211 11 1358999888 455899999999986543
No 484
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=102.29 Aligned_cols=90 Identities=16% Similarity=0.273 Sum_probs=71.4
Q ss_pred ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEE
Q psy535 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT 130 (460)
Q Consensus 54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~ 130 (460)
..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|+|++..+... .++.....+ .|.|.++..+|+|.|+|.
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 82 (103)
T 3qp3_A 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQES--SKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82 (103)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCC--SSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCCC--CCEEEEECCCEEEEEEcCCCcccCEEEEEE
Confidence 446777778888889999999999999998876 79999999998743 333333322 699999999999999999
Q ss_pred EEcCCCCcceeeEEEE
Q psy535 131 PYNAHGTQGSSGQMEV 146 (460)
Q Consensus 131 ~~~~~g~~~~~~~~~v 146 (460)
|.|..|.......+.|
T Consensus 83 a~N~~G~~~~~~~l~V 98 (103)
T 3qp3_A 83 CTNYKGEASDYATLDV 98 (103)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEeCCCcEEEEEEEEE
Confidence 9999988654444433
No 485
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.51 E-value=4.7e-14 Score=119.65 Aligned_cols=127 Identities=16% Similarity=0.232 Sum_probs=89.1
Q ss_pred ceEEEeeCC----eEEEeecCCCCCeeEEEEEEeCC---CCcceeeeEEEEe------cCCeeE-EcceeeeecceeeEE
Q psy535 10 TRVVIKKDG----TLVINPVGSDDSGLYMCEVSNGI---GEPQAAQAYLNVE------FPAKVT-FTPTVQYLPFRLQGV 75 (460)
Q Consensus 10 ~r~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~------~~p~~~-~~~~~~~~~~g~~~~ 75 (460)
+|+.+..++ +|.|.+++.+|+|.|+|.+.+.. .........|.|. .+|.+. ..|....+.+|+.++
T Consensus 64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~ 143 (245)
T 4ei6_B 64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT 143 (245)
T ss_dssp TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred CCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceE
Confidence 889887643 89999999999999999999632 1222345677776 355544 334444566799999
Q ss_pred EEEEEecCCCC-CeEEEeeCCeecCcccc--------------ccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCCc
Q psy535 76 VQCHIKANPTF-QYVTWTKDKRLLEPYQT--------------KDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGTQ 138 (460)
Q Consensus 76 l~C~~~~~~~~-~~v~W~~~~~~~~~~~~--------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~~ 138 (460)
|.|.+.+.+++ ..+.|+++|..+..... ..+. ....|.|.....+| .|.|+|.|.+.....
T Consensus 144 l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~ 220 (245)
T 4ei6_B 144 LVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA--LSSRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (245)
T ss_dssp EEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEE--EEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred EEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEE--EEEEEEEcHHHhccCCCeEEEEEEECCCCC
Confidence 99999885443 37999999998763211 1111 11247888887788 999999999865443
No 486
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.51 E-value=1.3e-14 Score=120.53 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=80.9
Q ss_pred CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEE--EEecCCeeEEcceeeeecceeeEEEEEEEec-CCCCCeEEEee
Q psy535 18 GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYL--NVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA-NPTFQYVTWTK 93 (460)
Q Consensus 18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~v~W~~ 93 (460)
++|.|.+++.+|+|.|+|.|.+..+.. ....+.+ .+..+|.+.+.+......+|+.++|.|.+.| .|++..|+|+|
T Consensus 76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k 155 (218)
T 2rgs_A 76 STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTS 155 (218)
T ss_dssp EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEE
Confidence 479999999999999999999986643 1222221 3456777765554333335899999999998 45544899999
Q ss_pred CCeecCccccccEEEeecCeE------EEeecCCCCCeEEEEEEEcCCCC
Q psy535 94 DKRLLEPYQTKDIVVMQNGSL------LFTRVNQNHQGRYTCTPYNAHGT 137 (460)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l------~i~~~~~~d~G~y~C~~~~~~g~ 137 (460)
+|..+............++++ .|.....+|.|.|+|.|.|....
T Consensus 156 ~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 156 NGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp TTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred CCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 999875322222222344443 34443444699999999987654
No 487
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.51 E-value=8.2e-14 Score=99.89 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=72.2
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~ 132 (460)
||.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+......++....+ ++|.|.++..+|+|.|+|.|.
T Consensus 5 pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 83 (100)
T 3irg_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCC-EEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCeeecCCCcEEEcCCCcEEEEEEEEEcCCC-ceEEEECCEEeecCCCCEEEEEecCCEEEEEEeecCcccCEEEEEEEE
Confidence 4566667777888999999999999998876 899999999886544556665554 579999999999999999999
Q ss_pred cCCCCcceeeEEEEEe
Q psy535 133 NAHGTQGSSGQMEVLV 148 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v 148 (460)
|..|.... .+.|.|
T Consensus 84 n~~g~~~~--~~~l~V 97 (100)
T 3irg_A 84 NEFGSDSA--TVNIHI 97 (100)
T ss_dssp ETTEEEEE--EEEEEE
T ss_pred eCCCcEEE--EEEEEE
Confidence 99887544 444444
No 488
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.51 E-value=4.1e-14 Score=118.85 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=84.4
Q ss_pred cccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC-------CcceeeeEEEEe----cCCeeEEcceeeeecc
Q psy535 7 SLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG-------EPQAAQAYLNVE----FPAKVTFTPTVQYLPF 70 (460)
Q Consensus 7 ~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~ 70 (460)
...+|+.+..++ +|.|.+++.+|+|.|.|.+.+..+ ........|.|. .+|.+...+....+..
T Consensus 67 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~ 146 (232)
T 3qhz_H 67 SLKTRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTS 146 (232)
T ss_dssp TTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC------
T ss_pred cccCceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccC
Confidence 345799998653 799999999999999999987531 112344567775 3455543333344556
Q ss_pred eeeEEEEEEEecCCC-CCeEEEeeCCeecCccccccEE-----EeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 71 RLQGVVQCHIKANPT-FQYVTWTKDKRLLEPYQTKDIV-----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 71 g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
|+.++|.|.+.+.++ +..+.|++++..+......... ....+.|.|......| |.|+|.|.+..+..
T Consensus 147 g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~ 219 (232)
T 3qhz_H 147 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 219 (232)
T ss_dssp -CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTE
T ss_pred CCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCc
Confidence 999999999988543 4568899998654221111110 0112358888888888 99999999876654
No 489
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.7e-14 Score=104.13 Aligned_cols=97 Identities=24% Similarity=0.442 Sum_probs=74.0
Q ss_pred CCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCC-ccceEEEEEEEEcCCeeeeccccCCCCcccccccceecC
Q psy535 331 SNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERA-SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQG 408 (460)
Q Consensus 331 s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~-~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (460)
+..+.+... .+|.+|.++++...+ +++.|+|++|...+ .++.+|.|+|+..+.
T Consensus 7 ~~~~~v~~~-~~P~~P~~l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~------------------------ 61 (120)
T 2yux_A 7 GASIDIQII-DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKS------------------------ 61 (120)
T ss_dssp CCCCCCCCC-CCCCCCSCEEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTT------------------------
T ss_pred cEEEEEEee-cCCCcCCCCEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCC------------------------
Confidence 333444433 458999999998766 69999999997654 689999999997542
Q ss_pred ceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535 409 NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454 (460)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~ 454 (460)
..|..+.. ....+.+++.+|.|++.|.|||+|.|..|.|++|..
T Consensus 62 -~~w~~~~~-~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~ 105 (120)
T 2yux_A 62 -MEWFTVIE-HYHRTSATITELVIGNEYYFRVFSENMCGLSEDATM 105 (120)
T ss_dssp -CCCEEEES-SCCSSCCEECCCCSSEEEEEEECCCSSSCSCSSCEE
T ss_pred -CceEEeee-cCCcCEEEECCCCCCCEEEEEEEEeeCCcCCCCccC
Confidence 12332221 235678899999999999999999999999999874
No 490
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.51 E-value=3.1e-14 Score=103.74 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=65.2
Q ss_pred eEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEE
Q psy535 49 AYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128 (460)
Q Consensus 49 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 128 (460)
+.|.+..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... .......++.|.|.++..+|+|.|+
T Consensus 3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~ 80 (108)
T 3kvq_A 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYT 80 (108)
T ss_dssp --------CCCBSCCCCEEEETTCCEEEECBCC----C-CEEEEESSSBCCCBT-TEEEETTTTEEEECSCCGGGCEEEE
T ss_pred eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCC-eEEEEECCeEcccCC-CeEEeCCCcEEEEeecCcccCEEEE
Confidence 45667778888888888899999999999999988776 699999998876422 2222334568999999999999999
Q ss_pred EEEEcCCCCcceeeEEEEEeeCCC
Q psy535 129 CTPYNAHGTQGSSGQMEVLVRKPP 152 (460)
Q Consensus 129 C~~~~~~g~~~~~~~~~v~v~~~p 152 (460)
|.|.|..|..... +.|.|..+|
T Consensus 81 C~a~n~~g~~~~~--~~l~V~~~~ 102 (108)
T 3kvq_A 81 CQACSVLGCAKVE--AFFIIEGAQ 102 (108)
T ss_dssp EEEC----CEEEE--EEEEEEC--
T ss_pred EEEEeCCCceEEE--EEEEEeCCC
Confidence 9999998886554 455555554
No 491
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.51 E-value=2.9e-15 Score=124.04 Aligned_cols=164 Identities=15% Similarity=0.203 Sum_probs=103.2
Q ss_pred EEcceeeeecceeeEEEEEEEecCCC--CCeEEEeeCCeecCccc--------cccEEEeecCeEEEeecCCCCCeEEEE
Q psy535 60 TFTPTVQYLPFRLQGVVQCHIKANPT--FQYVTWTKDKRLLEPYQ--------TKDIVVMQNGSLLFTRVNQNHQGRYTC 129 (460)
Q Consensus 60 ~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~y~C 129 (460)
...|....+.+|++++|.|.+.+.++ +..|.| + +..+.... ...+ ...+.|.|.++..+|+|.|+|
T Consensus 8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~--~~~~~L~I~~~~~~D~g~Y~C 83 (214)
T 1ow0_A 8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCY--SVSSVLPGCAEPWNHGKTFTC 83 (214)
T ss_dssp EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCC--CEEEECTTTHHHHHHTCEEEE
T ss_pred EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcE--EEEEEEEEeHHHcCCCCeEEE
Confidence 34466677889999999999998754 247999 4 33332110 0111 123358888888899999999
Q ss_pred EEEcCCCCcceeeEEEE-EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCccc-----
Q psy535 130 TPYNAHGTQGSSGQMEV-LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNR----- 201 (460)
Q Consensus 130 ~~~~~~g~~~~~~~~~v-~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~----- 201 (460)
.+.+..+.......+.+ .+..+|.+.+.+.....+..|+.++|.|.+ .| .|. +.+.|++++ ..+....
T Consensus 84 ~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~---~g~~P~~~~v~W~k~g-~~l~~~~~~~~~ 159 (214)
T 1ow0_A 84 TAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLA---RGFSPKDVLVRWLQGS-QELPREKYLTWA 159 (214)
T ss_dssp EECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEE---EEESSSCCEEEEEETT-EECCGGGSEECC
T ss_pred EEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEE---eeeECCCcEEEEEECC-EECCCCceeecC
Confidence 99987765433333321 345677776554333246789999999999 45 454 599999954 4443321
Q ss_pred -EEE---ecceEEE------ccccceeceEEEEEEecccc
Q psy535 202 -VKI---VGGNITI------EGLRRVDFGYYECVVSNEVA 231 (460)
Q Consensus 202 -~~~---~~~~l~i------~~~~~~~~g~y~C~a~n~~g 231 (460)
... .++++.+ ......+.|.|+|.|.|...
T Consensus 160 ~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 160 SRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp CEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred CcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence 111 2333333 22222347899999998654
No 492
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=98.94 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=71.1
Q ss_pred cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEE
Q psy535 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP 131 (460)
Q Consensus 55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~ 131 (460)
.+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+... .++....++ .|.|.++..+|+|.|+|.|
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 81 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRP-TAIWTKDGKAITQG--GKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV 81 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCC-EEEEEETTEECCSS--SSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCC-EEEEEECCEECcCC--CCEEEEEeCCEEEEEECCCCcccCEEEEEEE
Confidence 35677777888889999999999999998876 79999999988642 444444433 6999999999999999999
Q ss_pred EcCCCCcceeeEEEE
Q psy535 132 YNAHGTQGSSGQMEV 146 (460)
Q Consensus 132 ~~~~g~~~~~~~~~v 146 (460)
.|..|.......+.|
T Consensus 82 ~n~~g~~~~~~~l~V 96 (99)
T 3puc_A 82 KNSAGSVSSSCKLTI 96 (99)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EeCCCcEeEEEEEEE
Confidence 999888655555444
No 493
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.50 E-value=1.1e-13 Score=101.31 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=66.0
Q ss_pred CeeEEcceeeeecceeeEEEEEEEecCC--CCCeEEEeeCCee-cCccccccEEEe---------ecCeEEEeecCCCCC
Q psy535 57 AKVTFTPTVQYLPFRLQGVVQCHIKANP--TFQYVTWTKDKRL-LEPYQTKDIVVM---------QNGSLLFTRVNQNHQ 124 (460)
Q Consensus 57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~~~-~~~~~~~~~~~~---------~~~~l~i~~~~~~d~ 124 (460)
+.|...|....+.+|++++|.|.+.+.+ +.+.|+|||++.. +......++.+. ....|.|.++...|+
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 3466788888999999999999998752 3348999997421 110011222221 135799999999999
Q ss_pred eEEEEEEEcCCCCcceeeEEEEEe
Q psy535 125 GRYTCTPYNAHGTQGSSGQMEVLV 148 (460)
Q Consensus 125 G~y~C~~~~~~g~~~~~~~~~v~v 148 (460)
|.|+|+|.|..|..++.+.|+|.+
T Consensus 88 G~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 88 GNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp EEEEEEEECSSCEEEECCEEEEEC
T ss_pred EEEEEEEEeCCCcEEEEEEEEEEe
Confidence 999999999988876666666654
No 494
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.50 E-value=4.4e-14 Score=99.60 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=67.5
Q ss_pred CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecCccccccEEE-eecCeEEEeecCCCCCeEEEEEEE
Q psy535 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLEPYQTKDIVV-MQNGSLLFTRVNQNHQGRYTCTPY 132 (460)
Q Consensus 56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~ 132 (460)
+|.+...+....+.+|+.+.|.|.+.|.|.+ .++|++++ ..+... ..... ...+.|.|.++..+|+|.|+|.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 78 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKRADSGNYKLKVK 78 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSC-EEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCC-EEEEEECCCCcccCCc--EEEEecCCEEEEEECCCChhcCEEEEEEEE
Confidence 5677667778889999999999999999876 79999999 777532 11211 122469999999999999999999
Q ss_pred cCCCCcceeeEEEEEe
Q psy535 133 NAHGTQGSSGQMEVLV 148 (460)
Q Consensus 133 ~~~g~~~~~~~~~v~v 148 (460)
|..|.... .+.|.|
T Consensus 79 N~~G~~~~--~~~l~V 92 (93)
T 1wit_A 79 NELGEDEA--IFEVIV 92 (93)
T ss_dssp ETTEEEEE--EEEEEE
T ss_pred cCCCeEEE--EEEEEE
Confidence 99986544 444443
No 495
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.50 E-value=5.4e-14 Score=121.15 Aligned_cols=126 Identities=15% Similarity=0.207 Sum_probs=87.3
Q ss_pred eEEEee----CCeEEEeecCCCCCeeEEEEEEeCCC---CcceeeeEEEEec------CCeeEE-cceeeeecceeeEEE
Q psy535 11 RVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIG---EPQAAQAYLNVEF------PAKVTF-TPTVQYLPFRLQGVV 76 (460)
Q Consensus 11 r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l 76 (460)
|+.+.. +++|.|.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.+ .+....+..|+.++|
T Consensus 90 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L 169 (270)
T 3qib_D 90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATL 169 (270)
T ss_dssp HEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEE
T ss_pred cEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEE
Confidence 888865 34899999999999999999996432 1123446777765 455443 333344556999999
Q ss_pred EEEEec-CCCCCeEEEeeCCeecCccc--------------cccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCCc
Q psy535 77 QCHIKA-NPTFQYVTWTKDKRLLEPYQ--------------TKDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGTQ 138 (460)
Q Consensus 77 ~C~~~~-~~~~~~v~W~~~~~~~~~~~--------------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~~ 138 (460)
.|.+.+ .|.+..++|+++|..+.... ...+. ....|.|.....+| .|.|+|.|.+.....
T Consensus 170 ~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~ 245 (270)
T 3qib_D 170 VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA--LSSRLRVSATFWQNPRNHFRCQVQFYGLSE 245 (270)
T ss_dssp EEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEE--EEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred EEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEE--EEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence 999998 44444799999999885321 11111 11346777777777 999999999876544
No 496
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.49 E-value=2.3e-13 Score=115.73 Aligned_cols=168 Identities=12% Similarity=0.158 Sum_probs=103.0
Q ss_pred eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--ee---cC----------ccccccEEEee----cCeEEEeec
Q psy535 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RL---LE----------PYQTKDIVVMQ----NGSLLFTRV 119 (460)
Q Consensus 59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~~----------~~~~~~~~~~~----~~~l~i~~~ 119 (460)
+...|....+.+|++++|.|.+.. + ...+.|+|.. .. +. .....++.... +..|.|.++
T Consensus 6 v~q~p~~v~v~~G~~v~L~C~~~~-~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v 83 (252)
T 1oga_E 6 ITQSPKYLFRKEGQNVTLSCEQNL-N-HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA 83 (252)
T ss_dssp EECSCSEEEEETTCCEEECCEECS-C-CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred ceEcCCeEEEcCCCcEEEEEEeCC-C-CCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence 445677788899999999999854 3 3479999842 11 10 00124555442 247999999
Q ss_pred CCCCCeEEEEEEEcCCC---CcceeeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEE
Q psy535 120 NQNHQGRYTCTPYNAHG---TQGSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQ 190 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g---~~~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~ 190 (460)
+.+|+|.|+|.+.+..+ .......+.|.. ..+|.+.+.+.....+..|+.++|.|.+ .+ .|. +.+.|+
T Consensus 84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~---~g~~P~~~~v~W~ 160 (252)
T 1oga_E 84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVELSWW 160 (252)
T ss_dssp CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE---EEEBSSCEEEEEE
T ss_pred ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEE---eeEcCCCcEEEEE
Confidence 99999999999988521 111122344432 1366665542222234568999999998 45 465 499999
Q ss_pred cCCCccCCcccEEE----------ecc------eEEEccccce-eceEEEEEEecccce
Q psy535 191 RRDGVALPKNRVKI----------VGG------NITIEGLRRV-DFGYYECVVSNEVAT 232 (460)
Q Consensus 191 ~~~~~~~~~~~~~~----------~~~------~l~i~~~~~~-~~g~y~C~a~n~~g~ 232 (460)
+++ ..+....... .++ .|.|...... +.+.|+|.+.|....
T Consensus 161 ~~g-~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 161 VNG-KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp ETT-EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred ECC-EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 944 3332221110 112 2555544443 467899999997554
No 497
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.49 E-value=6.6e-14 Score=108.99 Aligned_cols=104 Identities=19% Similarity=0.198 Sum_probs=77.3
Q ss_pred eEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ec--CeEEEeecCCCCC
Q psy535 49 AYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QN--GSLLFTRVNQNHQ 124 (460)
Q Consensus 49 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~--~~l~i~~~~~~d~ 124 (460)
..+.+..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|+|++..+... .++.+. .+ ..|.|.++...|+
T Consensus 34 ~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~ 110 (154)
T 1fhg_A 34 AEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKES--RHFQIDYDEEGNCSLTISEVCGDDD 110 (154)
T ss_dssp CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCS--SSEEEEECTTCEEEEEESSCCGGGC
T ss_pred hcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECCEECCCC--CcEEEEECCCCeEEEEECCCChhcC
Confidence 34445567888888888899999999999999998876 79999999988642 333333 22 3799999999999
Q ss_pred eEEEEEEEcCCCCcceeeEEEEEeeCCCceeeC
Q psy535 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK 157 (460)
Q Consensus 125 G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~ 157 (460)
|.|+|.|.|..|... ..+.|.|..+|.....
T Consensus 111 G~Y~C~a~N~~G~~~--~~~~l~V~~~p~~~~~ 141 (154)
T 1fhg_A 111 AKYTCKAVNSLGEAT--CTAELLVETMGKEGEG 141 (154)
T ss_dssp EEEEEEEEETTEEEE--EEEEEEEECC------
T ss_pred EEEEEEEEECCCeEE--EEEEEEEeCcCcCCCC
Confidence 999999999998854 4556666667655433
No 498
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.49 E-value=5e-13 Score=111.96 Aligned_cols=173 Identities=12% Similarity=0.174 Sum_probs=104.3
Q ss_pred ceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--Cee---c------------CccccccEEEeecC-----eEEEeec
Q psy535 63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRL---L------------EPYQTKDIVVMQNG-----SLLFTRV 119 (460)
Q Consensus 63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~---~------------~~~~~~~~~~~~~~-----~l~i~~~ 119 (460)
|....+.+|++++|.|.+.+.. ....+.|+|. +.. + ......|+....+. +|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL 86 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 3346688999999999997531 2246999973 111 1 01112455544433 3999999
Q ss_pred CCCCCeEEEEEEEcCCC-----Cc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeE
Q psy535 120 NQNHQGRYTCTPYNAHG-----TQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTIT 188 (460)
Q Consensus 120 ~~~d~G~y~C~~~~~~g-----~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~ 188 (460)
+.+|+|.|.|.+.+..+ .. .......|.|. .+|.+...+... .+..|+.++|.|.+. ...| .+.+.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~--~~~P~~~~v~ 163 (230)
T 3n9g_H 87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVK--DYFPEPVTVS 163 (230)
T ss_dssp CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCC-CCCTTCEEEEEEEEE--EEBSSCCEEE
T ss_pred ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCc-cccCCCCEEEEEEEE--eEECCCEEEE
Confidence 99999999999987531 11 11122234442 345444322222 356899999999994 2234 45799
Q ss_pred EEcCCCccCCcc----cE------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535 189 WQRRDGVALPKN----RV------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241 (460)
Q Consensus 189 W~~~~~~~~~~~----~~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v 241 (460)
| . +....... .. ......|.|......| |.|+|.+.+..+.......+.+
T Consensus 164 W-~-~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v 223 (230)
T 3n9g_H 164 W-N-SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 223 (230)
T ss_dssp E-G-GGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred E-C-CcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence 9 3 32221100 00 0112368888888888 9999999998776555554444
No 499
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.49 E-value=1.7e-13 Score=115.44 Aligned_cols=173 Identities=13% Similarity=0.206 Sum_probs=102.7
Q ss_pred cceeeeecceeeEEEEEEEecCCC---CCeEEEeeC--Cee---c---C--------------ccccccEEEeecC----
Q psy535 62 TPTVQYLPFRLQGVVQCHIKANPT---FQYVTWTKD--KRL---L---E--------------PYQTKDIVVMQNG---- 112 (460)
Q Consensus 62 ~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~--~~~---~---~--------------~~~~~~~~~~~~~---- 112 (460)
.|....+.+|++++|.|.+.+.+. ...+.|++. +.. + . .....|+....+.
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 85 (239)
T 3tv3_H 6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL 85 (239)
T ss_dssp EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence 344567889999999999987542 337999983 211 1 0 0112344443322
Q ss_pred -eEEEeecCCCCCeEEEEEEEcCCC-----------CcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeee
Q psy535 113 -SLLFTRVNQNHQGRYTCTPYNAHG-----------TQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEA 176 (460)
Q Consensus 113 -~l~i~~~~~~d~G~y~C~~~~~~g-----------~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~ 176 (460)
.|.|.+++.+|+|.|.|.+.+..+ .........|.|. .+|.+...+... .+..|+.++|.|.+
T Consensus 86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~ 164 (239)
T 3tv3_H 86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLV 164 (239)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCC-CC--TTEEEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCCh-hhccCCcEEEEEEE
Confidence 499999999999999999976421 0011111233332 345444333332 35579999999999
Q ss_pred eccCCCCCC-eeEEEcCCCccCCc---ccE------EEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535 177 QEAEGTQKP-TITWQRRDGVALPK---NRV------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239 (460)
Q Consensus 177 ~~~~~~p~~-~~~W~~~~~~~~~~---~~~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l 239 (460)
. ...|.+ .+.|.+++. .... ... ....+.|.|......+ |.|+|.+.|..+.......+
T Consensus 165 ~--~~~p~~~~v~W~~~g~-~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l 233 (239)
T 3tv3_H 165 K--DYFPEPVTVSWNSGAL-TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV 233 (239)
T ss_dssp E--EEBSSCCEEEEGGGTB-CTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred e--eEeCCCeEEEEEECCc-cCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEe
Confidence 4 334544 588998543 2210 001 1112357777777777 99999999987665444433
No 500
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.48 E-value=5.7e-14 Score=118.39 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=86.3
Q ss_pred ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC------------CcceeeeEEEEe----cCCeeEEcceee
Q psy535 8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG------------EPQAAQAYLNVE----FPAKVTFTPTVQ 66 (460)
Q Consensus 8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~------------~~~~~~~~l~v~----~~p~~~~~~~~~ 66 (460)
..+|+.+..++ +|.|.+++.+|+|.|.|.+.+..+ ........|.|. .+|.+...+...
T Consensus 71 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~ 150 (239)
T 3tv3_H 71 LKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSS 150 (239)
T ss_dssp TGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCC
T ss_pred ccCCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCCh
Confidence 46899997653 699999999999999999987532 011233466664 244554344444
Q ss_pred eecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535 67 YLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ 138 (460)
Q Consensus 67 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~ 138 (460)
.+..|+.++|.|.+.+. |++..+.|++++..+........ ...+ +.|.|......| |.|+|.|.+..+..
T Consensus 151 ~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 227 (239)
T 3tv3_H 151 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 227 (239)
T ss_dssp CC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred hhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCce-ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCc
Confidence 45568999999999884 44446899999875432111111 1112 358888888888 99999999876554
Done!