RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy535
(460 letters)
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 236 bits (603), Expect = 8e-74
Identities = 75/392 (19%), Positives = 133/392 (33%), Gaps = 52/392 (13%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV--------VMQNGSLLFTRVNQNHQGR 126
+ C + P + +TW + + + + SL V + GR
Sbjct: 19 TLVCDAEGEPIPE-ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
Y C + G S +++ P F Y G +++ C+ + +
Sbjct: 78 YDCEAASRIGGHQKSMYLDIEY--APKFISNQTIYY-SWEGNPINISCDVK---SNPPAS 131
Query: 187 ITWQRRDGVALPKN---RVKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
I W RRD + LP +K + I DFG Y C +N + T Q L
Sbjct: 132 IHW-RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
Query: 240 VVEGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
+ P +PY + ++ + + + S G +Y + +E ++ W + +
Sbjct: 191 ALADV-PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SH 248
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NG 357
T + +N L P TTYE +V N G G S I + +T + P ++ +
Sbjct: 249 GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKS 308
Query: 358 FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417
F +S + + I Y++ +YR + +D
Sbjct: 309 FKLSITKQDDGGAPILEYIV-------------------------KYRSKDKEDQWLEKK 343
Query: 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
I + L YE Q+ N LG
Sbjct: 344 VQGNKDHIILEHLQWTMGYEVQITAANRLGYS 375
Score = 129 bits (326), Expect = 1e-33
Identities = 72/351 (20%), Positives = 122/351 (34%), Gaps = 25/351 (7%)
Query: 7 SLETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
SL+ R+ +K +L I V DSG Y CE ++ IG Q YL++E+ K
Sbjct: 49 SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDIEYAPKFISNQ 107
Query: 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVN 120
T+ Y + C +K+NP + W +DK +L T ++ G L +
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
N GRY CT N GT + + + P+ + + + + + ++
Sbjct: 167 DNDFGRYNCTATNHIGT--RFQEYILALADVPSSPYGVKIIELSQ--TTAKVSFNKPDSH 222
Query: 181 GTQKPTITW---QRRDGVALPKNRVKIVGG--NITIEGLRRVDFGYYECVVSNEV--ATI 233
G I ++ + V+ G + + L N
Sbjct: 223 GGVP--IHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY 280
Query: 234 VQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL 292
+ + +P +I G + S L GG + Y++ YR + +D
Sbjct: 281 SKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPI-LEYIVKYRSKDKEDQW 339
Query: 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
I + L YE Q+ N LG + V + PKP
Sbjct: 340 LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPT--VYEFSMPPKP 388
Score = 118 bits (297), Expect = 1e-29
Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 63/317 (19%)
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQR-------RDGVALPKNRVKIVG----GNITIEG 213
V + C+A EG P ITW+R +G R+++ G ++ I+
Sbjct: 13 YENGQVTLVCDA---EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKD 69
Query: 214 LRRVDFGYYECVVSNEVATIVQAAQLVVEG-----TQPHAPYNITGVATEFSVTLEWLPG 268
++ D G Y+C ++ + ++ L +E + Y+ G S
Sbjct: 70 VKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD------ 123
Query: 269 YSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPG-STQITINRLTPATTYEFQVVGKNE 324
P + W R++ K+ + G + I + + N
Sbjct: 124 VKSNPPAS---IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 325 LGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLE-RASLIQYYLIKYRTD 382
+G I+ + P P V + E++ +S+ P I +Y +
Sbjct: 181 IGTRFQEYILALADV---PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQV----- 232
Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
+ +E ++ W + + T + +N L P TTYE +V
Sbjct: 233 --------------------DVKEVASEIWKIVR-SHGVQTMVVLNNLEPNTTYEIRVAA 271
Query: 443 KNELGDGMLSNIVVVKT 459
N G G S I + +T
Sbjct: 272 VNGKGQGDYSKIEIFQT 288
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 189 bits (481), Expect = 1e-55
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 15/241 (6%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
++RVV+ G L I+ + DSG+Y C N +A + + +
Sbjct: 168 DSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQR 227
Query: 69 PFRLQGVV------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
P + + +C + P TW + + +++ ++K ++ +LL + V +
Sbjct: 228 PSNVIAIEGKDAVLECCVSGYPPPS-FTWLRGEEVIQL-RSKKYSLLGGSNLLISNVTDD 285
Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
G YTC + +S ++ VLV PP F P +Y ++ C G
Sbjct: 286 DSGTYTCVVTYKNENISASAELTVLV--PPWFLNHPSNLY-AYESMDIEFEC---AVSGK 339
Query: 183 QKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
PT+ W + V +P + +IV G N+ I G+ + D G+Y+CV NE +AQL+V
Sbjct: 340 PVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Query: 242 E 242
Sbjct: 400 P 400
Score = 138 bits (349), Expect = 1e-36
Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 21/250 (8%)
Query: 7 SLETRVVIKKDGTLVINPV-----GSDDSGLYMCEVSNGI-GEPQAAQAYLNVEFPAKVT 60
++ R +G+L+I + D GLY CE S G G + A + V P +
Sbjct: 66 GMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFL 125
Query: 61 FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRV 119
+++C + +P + W K+++ L P +VV+ +G+L +R+
Sbjct: 126 SQTESITAFMGDTVLLKCEVIGDPMPT-IHWQKNQQDLNPIPGDSRVVVLPSGALQISRL 184
Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA------FTIKPEAMYQRKVGESVDMH 173
G Y C+ N T+ + + EV + P F +P + G+ +
Sbjct: 185 QPGDSGVYRCSARNPASTR-TGNEAEVRILSDPGLHRQLYFLQRPSNVIAI-EGKDAVLE 242
Query: 174 CEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVA 231
C G P+ TW R + V +++ + G N+ I + D G Y CVV+ +
Sbjct: 243 CCVS---GYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE 299
Query: 232 TIVQAAQLVV 241
I +A+L V
Sbjct: 300 NISASAELTV 309
Score = 99 bits (249), Expect = 4e-23
Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 26/246 (10%)
Query: 38 SNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97
+ + + P+ ++ C +++ + W KD +
Sbjct: 4 GSELES-SHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62
Query: 98 LEPYQTKDIVVMQNGSLLFTRVN-----QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
L + NGSLL + + +G Y C S +V+V P
Sbjct: 63 LALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPL 122
Query: 153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----PKNRVKIV-GG 207
F + E++ +G++V + C E G PTI W +++ L +RV ++ G
Sbjct: 123 RFLSQTESI-TAFMGDTVLLKC---EVIGDPMPTIHW-QKNQQDLNPIPGDSRVVVLPSG 177
Query: 208 NITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEG--------TQPHAPYNITGVATE 258
+ I L+ D G Y C N +T A++ + P N+ + +
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 259 FSVTLE 264
LE
Sbjct: 238 -DAVLE 242
Score = 96.1 bits (239), Expect = 8e-22
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
+ + L+I+ V DDSG Y C V+ +A A L V P P+ Y
Sbjct: 266 SKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNHPSNLYA 324
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
+ +C + P V W K+ ++ P + ++ +L V ++ +G Y
Sbjct: 325 YESMDIEFECAVSGKPVPT-VNWMKNGDVVIP--SDYFQIVGGSNLRILGVVKSDEGFYQ 381
Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPA 153
C N G SS Q+ V PA
Sbjct: 382 CVAENEAGNAQSSAQLIVPK---PA 403
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 174 bits (442), Expect = 4e-50
Identities = 54/257 (21%), Positives = 89/257 (34%), Gaps = 22/257 (8%)
Query: 1 MNTKVGSLETRVVIKKDGTLVINPVGSDDS---GLYMCEVSNGIGEPQAAQAYLNVEFPA 57
N V + R+ DG L V +D Y+C N + + ++
Sbjct: 144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVT 203
Query: 58 KVTFT----PTVQYLPFRLQG------VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDI- 106
K P QY+ + ++ C +NP Y + K+ + + I
Sbjct: 204 KDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPM-GYPNYFKNGKDVNGNPEDRIT 262
Query: 107 --VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR 164
LLF +G YTC N G +++ V P + KPE +
Sbjct: 263 RHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK-PQKHSLKLTVVSAPKYEQKPEKVIVV 321
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYEC 224
K G+ V + C+ G P + W + L R + + I+G++ D GYY C
Sbjct: 322 KQGQDVTIPCKV---TGLPAPNVVW-SHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGC 377
Query: 225 VVSNEVATIVQAAQLVV 241
+NE + V
Sbjct: 378 RATNEHGDKYFETLVQV 394
Score = 121 bits (305), Expect = 1e-30
Identities = 63/356 (17%), Positives = 104/356 (29%), Gaps = 58/356 (16%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
+ K +G+LV + D G Y C G + + +
Sbjct: 51 QEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEK 110
Query: 67 YL----PFRLQGVVQCHI-KANPTFQYVTWTKDKRLLEP-----YQTKDIVVMQNGSLLF 116
PF+L C + A P +TW K +P + I +G+L F
Sbjct: 111 TPIEGRPFQL----DCVLPNAYPKPL-ITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 165
Query: 117 TRVNQN---HQGRYTCTPYNAHGTQGSSGQMEVL---------VRKPPAFTIKPEAMYQR 164
T V + +Y CT NA + + + P + M
Sbjct: 166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM-A 224
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-------VKIVGGNITIEGLRRV 217
K G+ ++C + ++G + N + G + +
Sbjct: 225 KAGDVTMIYCMYG---SNPMGYPNY-FKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 280
Query: 218 DFGYYECVVSNEVATIV-QAAQLVVEGTQPH---APYNITGVATEFSVTLEWLPGYSGGP 273
D G Y C V N V + +L V P P + V VT+ +G P
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVS-APKYEQKPEKVIVVKQGQDVTIPCK--VTGLP 337
Query: 274 DLKQNYVIWYREQGNKDWLPIP---VTPPGSTQITINRLTPATTYEFQVVGKNELG 326
V+W + P+ T S + I + + NE G
Sbjct: 338 APN---VVWS-----HNAKPLSGGRATVTDSG-LVIKGVKNGDKGYYGCRATNEHG 384
Score = 99.6 bits (248), Expect = 4e-23
Identities = 42/211 (19%), Positives = 65/211 (30%), Gaps = 16/211 (7%)
Query: 51 LNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ 110
L V+ + P V++C I+ N +W KD + + +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
GSL+F R + +G Y C G SS + A K G
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGV-ASSRVISFRKTYLIASPAKTHEK-TPIEGRPF 118
Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALPKN-------RVKIV-GGNITIEGLRRVD---F 219
+ C KP ITW++R A P R+ GN+ + + D
Sbjct: 119 QLDCVL--PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 176
Query: 220 GYYECVVSNEVA-TIVQAAQLVVEGTQPHAP 249
Y C N V + ++G
Sbjct: 177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 207
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 161 bits (410), Expect = 2e-46
Identities = 58/288 (20%), Positives = 100/288 (34%), Gaps = 27/288 (9%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP 131
+ C + +P V W + + + K + L+ V + Y
Sbjct: 23 TLVCKVTGHPKPI-VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA 81
Query: 132 YNAHGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
N G+ + +EV V P A++ GE V + G P IT
Sbjct: 82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPFS---GKPDPVIT 137
Query: 189 WQRRDGVAL-PKNRVKIVGGN-----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
W ++ + +++ + G+ R D G+Y N + +L V
Sbjct: 138 W-QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Query: 243 GTQPHAPYN--ITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP 299
P P ++ V + SV L W P GG + NY++ + W + V
Sbjct: 197 DV-PDPPRGVKVSDV-SRDSVNLTWTEPASDGGSKI-TNYIVEKCATTAERW--LRVGQA 251
Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKPGPP 346
T+ T+ L T+Y+F+V+ +N+ G S TK K
Sbjct: 252 RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299
Score = 121 bits (304), Expect = 3e-31
Identities = 62/328 (18%), Positives = 114/328 (34%), Gaps = 59/328 (17%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----- 205
P F + + + + + C+ G KP + W R+ + +
Sbjct: 4 APHFKEELRNLNV-RYQSNATLVCKVT---GHPKPIVKWYRQGKEIIADGLKYRIQEFKG 59
Query: 206 -GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG-TQPHAPYNITGVATEF---- 259
+ I + D Y+ +N+ ++ A L VE + H P + G+
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 260 -SVTLEWLPGYSGGPDLKQNYVIWYREQ---GNKDWLPIPVTPPGSTQITINRLTPATTY 315
V+++ +SG PD + W + Q N + VT ++ + N +
Sbjct: 120 EVVSIK--IPFSGKPDPV---ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174
Query: 316 EFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLE-RASLIQ 373
+ V KN G + + V P PPR V V++V+ V ++W P S I
Sbjct: 175 FYVVCAKNRFGIDQKTVELDVA---DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKIT 231
Query: 374 YYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPA 433
Y++ E + W + V T+ T+ L
Sbjct: 232 NYIV-------------------------EKCATTAERW--LRVGQARETRYTVINLFGK 264
Query: 434 TTYEFQVVGKNELGDG---MLSNIVVVK 458
T+Y+F+V+ +N+ G S + K
Sbjct: 265 TSYQFRVIAENKFGLSKPSEPSEPTITK 292
Score = 79.4 bits (196), Expect = 1e-16
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 11/143 (7%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP--FRLQG 74
L+I V DD+ +Y +N G + A L VE PAK+ T++ + L+G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 75 ---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG-SLLFTR-VNQNHQGRYTC 129
++ P +TW K + L++ ++V ++ SL+F V + G Y
Sbjct: 120 EVVSIKIPFSGKPDPV-ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 130 TPYNAHGTQGSSGQMEVLVRKPP 152
N G +E+ V P
Sbjct: 179 CAKNRFGI--DQKTVELDVADVP 199
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 162 bits (411), Expect = 1e-45
Identities = 57/242 (23%), Positives = 89/242 (36%), Gaps = 21/242 (8%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---EFPAKVTFTPTVQY 67
R V ++ G L I V D G Y C V+N + + + + P ++
Sbjct: 150 RFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV 209
Query: 68 LPFRLQGVVQ-------CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN 120
+ C NP + W + +P K NG L
Sbjct: 210 QFPETVPAEKGTTVKLECFALGNPVPT-ILWRRADG--KPIARKARRHKSNGILEIPNFQ 266
Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
Q G Y C N+ G + GQ+ P + + + ESV C+A
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLTFYA--QPNWVQIINDI-HVAMEESVFWECKA---N 320
Query: 181 GTQKPTITWQRRDGVAL-PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
G KPT W ++G L ++R++I G + I + D G Y+CV N+ I +A+L
Sbjct: 321 GRPKPTYRW-LKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Query: 240 VV 241
V
Sbjct: 380 SV 381
Score = 138 bits (348), Expect = 9e-37
Identities = 75/342 (21%), Positives = 117/342 (34%), Gaps = 31/342 (9%)
Query: 2 NTKVGSLETRVVIKKDGTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
T V DG+L+I NP + D+G Y C +N G + +A L +
Sbjct: 46 GTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFK 105
Query: 61 FTPTVQYLPFRLQGVV-QCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR 118
R QG+V C + W ++ + V + G+L +
Sbjct: 106 TRTRSTVSVRRGQGMVLLCGPPPHSGELS-YAWIFNEYPSYQ-DNRRFVSQETGNLYIAK 163
Query: 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLV--------RKPPAFTIKPEAMYQRKVGESV 170
V ++ G YTC N G L+ P ++ + G +V
Sbjct: 164 VEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTV 223
Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
+ C A G PTI W+R DG + K R G + I ++ D G YECV N
Sbjct: 224 KLECFAL---GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENS 280
Query: 230 VATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK 289
V QL QP+ I + ++ W +G P W K
Sbjct: 281 RGKNVAKGQLTFY-AQPNWVQIINDIHVAMEESVFWECKANGRPKPT---YRWL-----K 331
Query: 290 DWLPIPVTP----PGSTQITINRLTPATTYEFQVVGKNELGD 327
+ P+ T + I + + +Q V +N+ G
Sbjct: 332 NGDPLLTRDRIQIEQGT-LNITIVNLSDAGMYQCVAENKHGV 372
Score = 95.3 bits (237), Expect = 1e-21
Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 26/228 (11%)
Query: 53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG 112
V+ P+ V F + +L C +K NP W + ++ + +G
Sbjct: 9 VQEPSHVMFPLDSEEKKVKLS----CEVKGNPKPHI-RWKLNGTDVDI-GMDFRYSVVDG 62
Query: 113 SLLFTRVNQN-HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
SLL N+ G Y C N+ GT S + ++ F + + + G+ +
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTI-VSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNE 229
+ C + + + W + + NR + GN+ I + + D G Y CVV+N
Sbjct: 122 LLCGP--PPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNT 179
Query: 230 VAT---IVQAAQLVVEGT----------QPHAPYNITGVATEFSVTLE 264
V + L++ + P + +V LE
Sbjct: 180 VTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGT-TVKLE 226
Score = 92.6 bits (230), Expect = 1e-20
Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 5/137 (3%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
K +G L I +D+G Y C N G+ A+ L ++
Sbjct: 251 ARRHKSNGILEIPNFQQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAM 309
Query: 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
+C P W K+ L +D + ++ G+L T VN + G Y C
Sbjct: 310 EESVFWECKANGRPKPT-YRWLKNGDPLLT---RDRIQIEQGTLNITIVNLSDAGMYQCV 365
Query: 131 PYNAHGTQGSSGQMEVL 147
N HG SS ++ V+
Sbjct: 366 AENKHGVIFSSAELSVI 382
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 159 bits (404), Expect = 1e-45
Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 13/250 (5%)
Query: 9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
RVV++K+G L I +D+G+Y C+ ++ G+ Q A L + +
Sbjct: 48 TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP 107
Query: 66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG 125
Q V C + ++P V+W + ++ N +L +N++ +G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPA-VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG 166
Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQK 184
Y C + + V+V PPA ++ ++ + GE + C A G+ +
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC---RASGSPE 223
Query: 185 PTITWQRRDGVALPKN-RVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
P I+W R+G + +N + + +T+ + D G Y C +N+ + A L V
Sbjct: 224 PAISW-FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Query: 242 EGTQPHAPYN 251
Q H ++
Sbjct: 283 FV-QHHHHHH 291
Score = 58.7 bits (142), Expect = 8e-10
Identities = 34/222 (15%), Positives = 56/222 (25%), Gaps = 36/222 (16%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKI----V 205
TI + VGES C A G +I W G + RV + V
Sbjct: 4 LLQVTISLSKVELS-VGESKFFTCTA---IGE-PESIDWYNPQGEKIISTQRVVVQKEGV 58
Query: 206 GGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEGTQPH---APYNITGVATEFSV 261
+TI D G Y C ++ +A L + +
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY-QKLTFREVVSPQE-FKQGEDA 116
Query: 262 TLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT------INRLTPATTY 315
+ S P V W + + I + +
Sbjct: 117 EVVCRV--SSSPAPA---VSWLYHNE-----EVTTISDNRFAMLANNNLQILNINKSDEG 166
Query: 316 EFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVSVTE 353
++ G+ E + ++V P P N +
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 208
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 161 bits (408), Expect = 2e-45
Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 25/247 (10%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA----AQAYLNVEFPAKVTFTPT 64
R V + G L I + D G Y C ++ I + L++ + P+
Sbjct: 149 GRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPS 208
Query: 65 VQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT 117
++ + +C NP Q + W K + L
Sbjct: 209 IKAKFPADTYALTGQMVTLECFAFGNPVPQ-IKWRKLDGSQTSK-----WLSSEPLLHIQ 262
Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
V+ +G Y C N G G+ +++ P + + +G + C A
Sbjct: 263 NVDFEDEGTYECEAENIKGRDTYQGR--IIIHAQPDWLDVITDT-EADIGSDLRWSCVA- 318
Query: 178 EAEGTQKPTITWQRRDGVALPKN-RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236
G +P + W RDG L R+++ GG + L D G Y+CV N+ T+ +
Sbjct: 319 --SGKPRPAVRW-LRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYAS 375
Query: 237 AQLVVEG 243
A+L V+
Sbjct: 376 AELTVQA 382
Score = 131 bits (331), Expect = 2e-34
Identities = 69/342 (20%), Positives = 111/342 (32%), Gaps = 33/342 (9%)
Query: 2 NTKVGSLETRVVIKKDGTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
T++ G LVI NPV + D+G Y C +N G + +A L F + +
Sbjct: 45 GTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS 104
Query: 61 FTPTVQYLPFRLQGVV-QCHIKA-NPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFT 117
GV+ C P W + P + V G+L
Sbjct: 105 AEERDPVKITEGWGVMFTCSPPPHYPALS-YRWLLNEFPNFIPADGRRFVSQTTGNLYIA 163
Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---------PPAFTIKPEAMYQRKVGE 168
+ + G Y+C + S + P+ K A G+
Sbjct: 164 KTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQ 223
Query: 169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
V + C A G P I W++ DG ++ + I+ + D G YEC N
Sbjct: 224 MVTLECFAF---GNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278
Query: 229 EVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN 288
++++ QP IT + L W SG P V W
Sbjct: 279 IKGRDTYQGRIIIH-AQPDWLDVITDTEADIGSDLRWSCVASGKPRPA---VRWL----- 329
Query: 289 KDWLPIPVTP----PGSTQITINRLTPATTYEFQVVGKNELG 326
+D P+ G + ++L + +Q V +N+ G
Sbjct: 330 RDGQPLASQNRIEVSGGE-LRFSKLVLEDSGMYQCVAENKHG 370
Score = 97.2 bits (242), Expect = 3e-22
Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 5/145 (3%)
Query: 3 TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT 62
K+ +T + + L I V +D G Y CE N G Q + +
Sbjct: 242 RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDV 300
Query: 63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
T C P V W +D + L ++ + + G L F+++
Sbjct: 301 ITDTEADIGSDLRWSCVASGKPRPA-VRWLRDGQPLAS---QNRIEVSGGELRFSKLVLE 356
Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVL 147
G Y C N HGT +S ++ V
Sbjct: 357 DSGMYQCVAENKHGTVYASAELTVQ 381
Score = 89.5 bits (222), Expect = 1e-19
Identities = 45/299 (15%), Positives = 85/299 (28%), Gaps = 36/299 (12%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQGRYTCTPYN 133
+ C +ANP Y W + L+ + G L+ + + G Y C N
Sbjct: 26 TLTCRARANPPATY-RWKMNGTELKM-GPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN 83
Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
A GT S + + F+ + + G V C + W +
Sbjct: 84 ARGTV-VSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSP--PPHYPALSYRWLLNE 140
Query: 194 GVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-----VQAAQLVVEGT 244
+ GN+ I D G Y C ++ + I + +QL +
Sbjct: 141 FPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200
Query: 245 QP---------HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP 295
P + + + VTLE G P + + W + G+
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQ-MVTLECF--AFGNPVPQ---IKWRKLDGS---QTSK 251
Query: 296 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVTE 353
+ I + ++ +N G +++ + P +
Sbjct: 252 WLSSEPL-LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ-PDWLDVITDTEADI 308
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 161 bits (408), Expect = 1e-43
Identities = 52/241 (21%), Positives = 89/241 (36%), Gaps = 21/241 (8%)
Query: 7 SLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPT 64
+ R+ + D TL + V +D G Y C + N + + LNV + P T +P+
Sbjct: 330 PVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPS 389
Query: 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
Y + + CH +NP QY +W D + + L + + + +
Sbjct: 390 YTYYRPGVNLSLSCHAASNPPAQY-SWLIDGNIQQH----------TQELFISNITEKNS 438
Query: 125 GRYTCTPYNAHGTQGSSGQMEVLV-RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
G YTC N+ + + V + P +I + ++V CE Q
Sbjct: 439 GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP----EAQ 494
Query: 184 KPTITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATIV-QAAQLV 240
T W R+++ GN +T+ + R D Y C + N V+ L
Sbjct: 495 NTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLD 554
Query: 241 V 241
V
Sbjct: 555 V 555
Score = 138 bits (349), Expect = 1e-35
Identities = 65/370 (17%), Positives = 119/370 (32%), Gaps = 36/370 (9%)
Query: 1 MNTKVGSLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAK 58
+N + + R+ + TL + V +D+ Y CE N + ++ LNV + P
Sbjct: 146 VNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDA 205
Query: 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR 118
T +P + CH +NP QY +W + + L
Sbjct: 206 PTISPLNTSYRSGENLNLSCHAASNPPAQY-SWFVNGTFQQS----------TQELFIPN 254
Query: 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
+ N+ G YTC +N+ + + V +PP I + ++V + CE
Sbjct: 255 ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP- 313
Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEV-ATIV 234
Q T W + R+++ +T+ + R D G YEC + NE+
Sbjct: 314 ---EIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHS 370
Query: 235 QAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
L V + + V L + P + W + GN
Sbjct: 371 DPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQ---YSWLID-GN------ 420
Query: 295 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP---PRNVSV 351
+ + I+ +T + + N + + + P P N
Sbjct: 421 -IQQHTQE-LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKP 478
Query: 352 TEVNNGFVIS 361
E + +
Sbjct: 479 VEDKDAVAFT 488
Score = 121 bits (304), Expect = 1e-29
Identities = 60/364 (16%), Positives = 114/364 (31%), Gaps = 36/364 (9%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIG--EPQAAQAYLNVEFPAKVTFTPTVQYL 68
R +I + +L+I + +D+G Y V E Q + E P + + +
Sbjct: 64 REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPV 123
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
+ C + Y+ W ++ L P + + N +L V +N Y
Sbjct: 124 EDKDAVAFTCEPETQDA-TYLWWVNNQSL--PVSPRLQLSNGNRTLTLFNVTRNDTASYK 180
Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
C N + S + + V P + GE++++ C A +
Sbjct: 181 CETQNPVSAR-RSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSC---HAASNPPAQYS 236
Query: 189 WQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHA 248
W +G + I + + G Y C N + + +
Sbjct: 237 W-FVNGTFQQST------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP 289
Query: 249 -----PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP----VTPP 299
N V E +V L + +W+ N LP+ ++
Sbjct: 290 KPFITSNNSNPVEDEDAVALT---CEPEIQNTT---YLWWV---NNQSLPVSPRLQLSND 340
Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV 359
T +T+ +T ++ +NEL S+ V++ P + S T G
Sbjct: 341 NRT-LTLLSVTRNDVGPYECGIQNELSVDH-SDPVILNVLYGPDDPTISPSYTYYRPGVN 398
Query: 360 ISWQ 363
+S
Sbjct: 399 LSLS 402
Score = 95.8 bits (238), Expect = 3e-21
Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 12/139 (8%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQYLP 69
+ + TL + V +D+ Y+C + N + ++ L+V + P +P
Sbjct: 513 LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYL 572
Query: 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
+ CH +NP+ QY +W + + L ++ N+ G Y C
Sbjct: 573 SGANLNLSCHSASNPSPQY-SWRINGIPQQH----------TQVLFIAKITPNNNGTYAC 621
Query: 130 TPYNAHGTQGSSGQMEVLV 148
N + +S + V
Sbjct: 622 FVSNLATGRNNSIVKSITV 640
Score = 94.3 bits (234), Expect = 8e-21
Identities = 43/291 (14%), Positives = 84/291 (28%), Gaps = 37/291 (12%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLE-----------------PYQTKDIVVMQNGSLLFT 117
++ H F Y +W K +R+ P + ++ N SLL
Sbjct: 18 LLLVHNLPQHLFGY-SWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQ 76
Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
+ QN G YT + + + + P +I + ++V CE +
Sbjct: 77 NIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPE 136
Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQ 235
TQ T W + R+++ +T+ + R D Y+C N V+
Sbjct: 137 ----TQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRS 192
Query: 236 A-AQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
L V + + L + P + W+
Sbjct: 193 DSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQ---YSWFVNG-------- 241
Query: 295 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP 345
+ ++ I +T + + N + + + P P
Sbjct: 242 -TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 153 bits (388), Expect = 2e-43
Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 13/233 (5%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
TL I DD+G+Y C V+ G A + + PT Q V+
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C + ++ + W R + + +V+ N L + + +G Y C
Sbjct: 121 VCDVVSSLPPT-IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
+ + ++V+V PP + + +G+SV + C +A+G +PT++W +DG
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC---DADGFPEPTMSWT-KDGE 235
Query: 196 ALPKNR-------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
+ +TI + + D Y C+ N+ + L V
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 106 bits (265), Expect = 5e-26
Identities = 42/202 (20%), Positives = 70/202 (34%), Gaps = 21/202 (10%)
Query: 77 QCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPY 132
C + + + ++W + L P Q + VV + +L N + G Y C
Sbjct: 23 LCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT 82
Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
GTQ S + V + + F P + K GE + C+ + PTI W +
Sbjct: 83 AEDGTQ-SEATVNVKIFQKLMFKNAPTPQ-EFKEGEDAVIVCDV---VSSLPPTIIW-KH 136
Query: 193 DGVALP---KNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG----- 243
G + R ++ + I G+++ D G Y C + + V
Sbjct: 137 KGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPT 196
Query: 244 -TQPHAPYNITGVATEFSVTLE 264
+ N T SVTL
Sbjct: 197 VQARQSIVNAT-ANLGQSVTLV 217
Score = 94.6 bits (235), Expect = 6e-22
Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 7/147 (4%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVTFTPTVQY 67
+ R ++ + L I + D G Y CE + V P V ++
Sbjct: 146 DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVN 205
Query: 68 LPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEP---YQTKDIVVMQNGSLLFTRVNQN 122
L V C P ++WTKD +E K I + L V++N
Sbjct: 206 ATANLGQSVTLVCDADGFPEPT-MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN 264
Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVR 149
+ Y C N G Q +S ++V +
Sbjct: 265 DEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 61.0 bits (148), Expect = 2e-10
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---- 205
+ I P + VGES C+ + I+W +G L N+ +I
Sbjct: 1 RVLQVDIVPSQG-EISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWN 57
Query: 206 ---GGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVV 241
+TI D G Y+CVV+ E T +A + +
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 160 bits (405), Expect = 1e-42
Identities = 92/469 (19%), Positives = 152/469 (32%), Gaps = 80/469 (17%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
V + GTL+I +DSG Y+C V+N +G ++ + L V P P Q + F
Sbjct: 301 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGR 359
Query: 73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132
V C NP V+W KD + + L V + +G Y C
Sbjct: 360 PAVFTCQYTGNPIKT-VSWMKDGKAIGH---------SESVLRIESVKKEDKGMYQCFVR 409
Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
N + +S ++++ R P + + G SV + C A G P I+W+
Sbjct: 410 NDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKC---VAGGNPTPEISWELD 466
Query: 193 DGVALPKNRVKI---------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
+R ++ V + I + D G Y+C+ ++V +A+L V G
Sbjct: 467 GKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526
Query: 244 -TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP------V 296
VA E ++ + +G P ++W R+ +P V
Sbjct: 527 LPYIRQMEKKAIVAGE-TLIVTC--PVAGYPIDS---IVWERDNR-----ALPINRKQKV 575
Query: 297 TPPGSTQIT-INRLTPATTYEFQVVGKNELGDG-MLSNIVVVKTKGPKPGPPRNVSVTEV 354
P G+ I + R + TY V KN+ G S V V +V
Sbjct: 576 FPNGTLIIENVERNSDQATYT--CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQV 633
Query: 355 NNGFVISWQ-----PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGN 409
+ PL I + DG I +
Sbjct: 634 GQYLTLHCSVPGGDLPLN---------IDWTLDGQ-------AISEDLGITTSR------ 671
Query: 410 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
+ +TI + + F +N G + + V
Sbjct: 672 --------VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712
Score = 158 bits (400), Expect = 5e-42
Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 20/253 (7%)
Query: 11 RVVIKKDGTLVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV-TFTPTVQYL 68
+ + +GTL+I V + D Y C N G + V ++ F
Sbjct: 572 KQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPA 631
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP--YQTKDIVVMQNGSLLFTRVNQNHQGR 126
+ C + + WT D + + T V + L V +H G
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
+TC N G Q + + V V PP + ++P G + C+A G KP
Sbjct: 692 FTCHARNLAGHQQFTTPLNVYV--PPRWILEPTDKAFA-QGSDAKVECKAD---GFPKPQ 745
Query: 187 ITWQRRDGVALPKN--------RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
+TW ++ P +++ G + ++ +++ + GYY C N + + + A
Sbjct: 746 VTW-KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVI 804
Query: 239 LVVEGTQPHAPYN 251
++ H ++
Sbjct: 805 MISVQAHHH-HHH 816
Score = 144 bits (365), Expect = 2e-37
Identities = 75/371 (20%), Positives = 125/371 (33%), Gaps = 52/371 (14%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
+ + + L I V +D G+Y C V N + A A L + F P V F
Sbjct: 382 KAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAE-ASAELKLG----GRFDPPVIRQAF 436
Query: 71 RLQGVV-------QCHIKANPTFQYVTWTKDKRLLEP---YQTKDIVVMQ---NGSLLFT 117
+ + + +C NPT + ++W D + + YQ V + L T
Sbjct: 437 QEETMEPGPSVFLKCVAGGNPTPE-ISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNIT 495
Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVL----VRKPPAFTIKPEAMYQRKVGESVDMH 173
V+ N G Y C + G S ++ V +R+ I GE++ +
Sbjct: 496 SVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAI--------VAGETLIVT 547
Query: 174 CEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV-GGNITIEGL-RRVDFGYYECVVSNEV 230
C G +I W RD ALP N + K+ G + IE + R D Y CV N+
Sbjct: 548 C---PVAGYPIDSIVW-ERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQE 603
Query: 231 ATIVQA-AQLVVEGT---QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ 286
+ ++ V P A +TL GG + W +
Sbjct: 604 GYSARGSLEVQVMVLPRIIPFAFEEGP-AQVGQYLTLHCSV--PGGD--LPLNIDWTLDG 658
Query: 287 G---NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
+ + +TI + + F +N G + + V P+
Sbjct: 659 QAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP-PRW 717
Query: 344 -GPPRNVSVTE 353
P + + +
Sbjct: 718 ILEPTDKAFAQ 728
Score = 140 bits (355), Expect = 4e-36
Identities = 66/369 (17%), Positives = 118/369 (31%), Gaps = 46/369 (12%)
Query: 11 RVVIKKDGTLVINPVG-SDDSGLYMCEVSNGIG--EPQAAQAYLNVEFPAKVTFTPTVQY 67
+ ++ G L I VG D Y C + + +A V + P V
Sbjct: 192 KYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVS 251
Query: 68 LPFRLQGVV--------QCHIKANPTFQYVTWTKDKRLL---EPYQTKDIVVMQNGSLLF 116
L C + P W K + D V +G+L+
Sbjct: 252 LAKFDMKTYSGSSTMALLCPAQGYPVPV-FRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 310
Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
G+Y C N+ G + + V P + I P G C
Sbjct: 311 KDAVVEDSGKYLCVVNNSVGGESVETV--LTVTAPLSAKIDPPTQ-TVDFGRPAVFTC-- 365
Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236
+ G T++W +DG A+ + + IE +++ D G Y+C V N+ + +
Sbjct: 366 -QYTGNPIKTVSW-MKDGKAIGHS-----ESVLRIESVKKEDKGMYQCFVRNDRESAEAS 418
Query: 237 AQLVVEGTQP-----HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE-----Q 286
A+L + G A T + SV L+ + G P + + W +
Sbjct: 419 AELKLGGRFDPPVIRQAFQEET-MEPGPSVFLKCVA--GGNPTPE---ISWELDGKKIAN 472
Query: 287 GNKDWLPIPVTPPGSTQIT--INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
++ + VT G I + ++ + K+++G S + V P
Sbjct: 473 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL-PYIR 531
Query: 345 PPRNVSVTE 353
++
Sbjct: 532 QMEKKAIVA 540
Score = 132 bits (333), Expect = 3e-33
Identities = 64/383 (16%), Positives = 116/383 (30%), Gaps = 48/383 (12%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEF 55
T VG + I DG LV P ++D + +Y C N G + ++
Sbjct: 78 GTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 137
Query: 56 PAKVTFTPTVQYLPFRLQGVVQCHIK---ANPTFQYVTWTKDKRLLEPYQTKD---IVVM 109
+++ V++C I A+ V+W D+ + +V+
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPGAEYDGKYLVL 196
Query: 110 QNGSLLFTRVNQNH-QGRYTCTPYNAHGTQGSSGQMEVLV--------RKPPAFTIKPEA 160
+G L V Y C + + + + P ++
Sbjct: 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256
Query: 161 MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-------RVKIVGGNITIEG 213
M ++ + C AQ G P W + + RVK V G + I+
Sbjct: 257 MKTYSGSSTMALLCPAQ---GYPVPVFRW-YKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 312
Query: 214 LRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGP 273
D G Y CVV+N V L V A + +F + Y+G P
Sbjct: 313 AVVEDSGKYLCVVNNSVGGESVETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNP 371
Query: 274 DLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 333
V W ++ + S + I + +Q +N+ S
Sbjct: 372 IKT---VSWMKDG-------KAIGHSESV-LRIESVKKEDKGMYQCFVRNDRESAEASAE 420
Query: 334 VVVKTKGPKP---GPPRNVSVTE 353
+ + + P + ++
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEP 443
Score = 108 bits (271), Expect = 2e-25
Identities = 47/363 (12%), Positives = 95/363 (26%), Gaps = 35/363 (9%)
Query: 20 LVINPVGSDDSGLYMCEVSNGIGEPQ-AAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV-Q 77
+ + L+ G AA + PT + G +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN------QNHQGRYTCTP 131
C NP + W + + +G L+F + H Y C
Sbjct: 61 CKASGNPMPEI-IWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
N G+ S + V + + G S + C ++W
Sbjct: 120 RNQFGSIISR-DVHVRAVVAQYYEADVNKEHVI-RGNSAVIKCLIPSFVADFVEVVSWHT 177
Query: 192 RDGVALPKN-----RVKIV-GGNITIEGLRRVD-FGYYECVVSNEV--ATIVQAAQLVVE 242
+ + ++ G + I + D + Y+C + + T + A + +
Sbjct: 178 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV 237
Query: 243 GTQPHAPYNITGVATEFSVTLEWLPG--------YSGGPDLKQNYVIWYREQG----NKD 290
T+P + V+ + G P WY+ +
Sbjct: 238 ITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPV---FRWYKFIEGTTRKQA 294
Query: 291 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVS 350
+ S + I + ++ V N +G + ++ V P +
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 354
Query: 351 VTE 353
V
Sbjct: 355 VDF 357
Score = 92.3 bits (229), Expect = 5e-20
Identities = 51/329 (15%), Positives = 95/329 (28%), Gaps = 50/329 (15%)
Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
+ A G+Q + +K P F +P ++ C
Sbjct: 4 PNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC-- 61
Query: 177 QEAEGTQKPTITWQRRDGVAL---PKNRVKIVGGNITIEGLRRVDF------GYYECVVS 227
+A G P I W R DG A+ P R G + R D+ Y C+
Sbjct: 62 -KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 228 NEVATIVQAAQLVVEGTQPH---APYNITGVATEFSVTLE-WLPGYSGGPDLKQNYVIWY 283
N+ +I+ V + + S ++ +P + V W+
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGN-SAVIKCLIPSFVADFVEV---VSWH 176
Query: 284 REQGNKDWLPIP----VTPPGSTQITINRLTPA-TTYEFQVVGKNELGDGMLSNI---VV 335
++ + S ++ I + P +Q K+ L + +
Sbjct: 177 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236
Query: 336 VKTKGPKPGPPRNVSVTEVNNGFV-------------------ISWQPPLERASLIQYYL 376
V T+ P+ VS+ + + W +E + Q +
Sbjct: 237 VITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV 296
Query: 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
+ R TL E++ G+Y
Sbjct: 297 LNDRVKQVSGTLIIKDAVVEDS---GKYL 322
Score = 91.5 bits (227), Expect = 9e-20
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 7/153 (4%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
+ T V ++ L I V + +G + C N G Q LNV P + PT
Sbjct: 665 LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ-FTTPLNVYVPPRWILEPTD 723
Query: 66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL----EPYQTKDIVVMQNGSLLFTRVNQ 121
+ V+C P Q VTW K + + D + ++ G+L + +
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQ-VTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQK 782
Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF 154
++G Y C N G+ S+ M V+
Sbjct: 783 TNEGYYLCEAINGIGSGLSAVIMIS-VQAHHHH 814
Score = 36.1 bits (83), Expect = 0.025
Identities = 22/169 (13%), Positives = 39/169 (23%), Gaps = 20/169 (11%)
Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP----HAPYNITGVATEFSVTLEW 265
+ R + V + AA + P N + +E
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61
Query: 266 LPGYSGGPDLKQNYVIWYREQGNKDWLP--IPVTPPGSTQITINRLTPATTY------EF 317
SG P + +IW R G + + +
Sbjct: 62 KA--SGNPMPE---IIWIRSDGTAVGDVPGLRQISSDGK-LVFPPFRAEDYRQEVHAQVY 115
Query: 318 QVVGKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVTEVNNGFVISWQPP 365
+ +N+ G + ++ V V N VI P
Sbjct: 116 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR-GNSAVIKCLIP 163
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 153 bits (388), Expect = 3e-42
Identities = 54/248 (21%), Positives = 83/248 (33%), Gaps = 27/248 (10%)
Query: 11 RVVIKKDGTLVINPVG-SDDSGLYMCEVSNGIGEP--QAAQAYLNV-------EFPAKVT 60
RV +G L + V D Y C Q L V E
Sbjct: 164 RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFM 223
Query: 61 FTPTVQYLPFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT 117
+ L+G +++C PT + W K L + K N +L T
Sbjct: 224 YPQGTASSQMVLRGMDLLLECIASGVPTPD-IAWYKKGGDLPSDKAK--FENFNKALRIT 280
Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
V++ G Y C N G+ + + V P + +P+ + GE + C A
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVKA--APYWLDEPKNL-ILAPGEDGRLVCRA- 336
Query: 178 EAEGTQKPTITWQRRDGVAL----PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233
G KPT+ W +G L P ++ G I + Y+C SNE +
Sbjct: 337 --NGNPKPTVQW-MVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393
Query: 234 VQAAQLVV 241
+ A + V
Sbjct: 394 LANAFVSV 401
Score = 125 bits (316), Expect = 3e-32
Identities = 69/342 (20%), Positives = 110/342 (32%), Gaps = 46/342 (13%)
Query: 13 VIKKDGTLVINPVGS----DDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQY 67
+ ++ GTLVI+ + G Y C N G + + L V P
Sbjct: 68 MRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVV 127
Query: 68 LPFRLQGVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQG 125
+ +QC+ P+ + W Q K + NG L F+ V Q
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPV-IFWMSSSMEPIT-QDKRVSQGHNGDLYFSNVMLQDMQT 185
Query: 126 RYTCTPYNAHG-TQGSSGQMEVLVR-------KPPAFTIKPEAMYQRKV--GESVDMHCE 175
Y+C T + V + P+F + V G + + C
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245
Query: 176 AQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATI 233
A G P I W + G LP ++ K + I + D G Y C+ SN++ +I
Sbjct: 246 A---SGVPTPDIAW-YKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI 301
Query: 234 VQAAQLVVEGTQPH---APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD 290
+ V+ P+ P N+ +A L +G P V W G
Sbjct: 302 RHTISVRVK-AAPYWLDEPKNLI-LAPGEDGRLVCRA--NGNPKPT---VQWMVN-GE-- 351
Query: 291 WLPIPVTPPGSTQI------TINRLTPATTYEFQVVGKNELG 326
P+ PP + ++ +Q NE G
Sbjct: 352 --PLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG 391
Score = 94.2 bits (234), Expect = 4e-21
Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 2/137 (1%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
+ L I V +DSG Y C SN +G + V+ P L
Sbjct: 268 AKFENFNKALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAP 326
Query: 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
G + C NP V W + L+ + +++F + + Y C
Sbjct: 327 GEDGRLVCRANGNPKPT-VQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCN 385
Query: 131 PYNAHGTQGSSGQMEVL 147
N HG ++ + VL
Sbjct: 386 TSNEHGYLLANAFVSVL 402
Score = 92.6 bits (230), Expect = 1e-20
Identities = 59/334 (17%), Positives = 113/334 (33%), Gaps = 35/334 (10%)
Query: 44 PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV-QCHIKANPTFQYVTWTKDKRLLEPYQ 102
P + P +T ++ ++ +C K NP + WT++ R +
Sbjct: 4 PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSF-HWTRNSRFFNIAK 62
Query: 103 TKDI-VVMQNGSLLFTRVNQN----HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK 157
+ + ++G+L+ + ++G Y C N GT S ++ + V K P + +
Sbjct: 63 DPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTA-LSNRIRLQVSKSPLWPKE 121
Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV-GGNITIEGLR 215
+ G + + C G P I W + ++ RV G++ +
Sbjct: 122 NLDPVVVQEGAPLTLQCNP--PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVM 179
Query: 216 RVD-FGYYECVVSNEVATIVQA---AQLVVEGTQP---HAPYNITGVATEFSVTLEWLPG 268
D Y C +Q L V T+ P + T S + L G
Sbjct: 180 LQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMV--LRG 237
Query: 269 --------YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 320
SG P + WY++ G+ + I ++ + E+ +
Sbjct: 238 MDLLLECIASGVPTPD---IAWYKKGGDLPSDKAKFENFNKA-LRITNVSEEDSGEYFCL 293
Query: 321 GKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVTE 353
N++G + V VK P P+N+ +
Sbjct: 294 ASNKMGSIRHTISVRVKAA-PYWLDEPKNLILAP 326
Score = 47.9 bits (114), Expect = 4e-06
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ T++ +Y C SN G A A+++V
Sbjct: 356 APPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLL-ANAFVSV 401
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 149 bits (378), Expect = 6e-42
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 16/241 (6%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+++ TL + V D+G Y C SN G+ A L V+ P + +
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS-CSAQLGVQEPPRFIKKLEPSRIV 111
Query: 70 FRLQGVV-QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRY 127
+ + +C I +P + V W KD+ ++ + + L ++ G Y
Sbjct: 112 KQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187
TC +NA G+ SS ++V PP F KP + G V + CE Q GT +
Sbjct: 171 TCEAHNAAGSASSSTSLKVKE--PPVFRKKPHPVE-TLKGADVHLECELQ---GTPPFQV 224
Query: 188 TWQRRDGVALPKN-RVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+W +D L + KI+ N I I + D G Y+C SN+V + + ++
Sbjct: 225 SW-HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Query: 243 G 243
Sbjct: 284 A 284
Score = 114 bits (286), Expect = 6e-29
Identities = 58/277 (20%), Positives = 102/277 (36%), Gaps = 31/277 (11%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYN 133
+CH+ + +TW KD R + P + +++ +L +V + G+YTC N
Sbjct: 24 TFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82
Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
G S Q + V++PP F K E K E C + G+ + + W +D
Sbjct: 83 VAGKDSCSAQ--LGVQEPPRFIKKLEPSRIVKQDEHTRYEC---KIGGSPEIKVLWY-KD 136
Query: 194 GVALPKN---RVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH- 247
+ ++ R+ V + + L D G Y C N + + L V+ P
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP-PVF 195
Query: 248 --APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP----IPVTPPGS 301
P+ + + V LE G P + V W++ +K L +
Sbjct: 196 RKKPHPVETLKGA-DVHLECEL--QGTPPFQ---VSWHK---DKRELRSGKKYKIMSENF 246
Query: 302 TQI-TINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 337
I + A E+Q N++G + +K
Sbjct: 247 LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 69.0 bits (169), Expect = 3e-13
Identities = 46/219 (21%), Positives = 75/219 (34%), Gaps = 33/219 (15%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV---- 205
PP F +KP ++ +GES C GT ITW +D + K+
Sbjct: 5 PPFFDLKPVSV-DLALGESGTFKCHV---TGTAPIKITW-AKDNREIRPGGNYKMTLVEN 59
Query: 206 GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH---APYNITGVATEFSVT 262
+T+ + + D G Y C SN +AQL V+ P V +
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTR 118
Query: 263 LEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP-------PGSTQITINRLTPATTY 315
E G P++K V+WY+++ I + + + L+ +
Sbjct: 119 YECKI--GGSPEIK---VLWYKDET-----EIQESSKFRMSFVESVAVLEMYNLSVEDSG 168
Query: 316 EFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVTE 353
++ N G S + VK P P V +
Sbjct: 169 DYTCEAHNAAGSASSSTSLKVKEP-PVFRKKPHPVETLK 206
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 149 bits (376), Expect = 4e-41
Identities = 49/262 (18%), Positives = 86/262 (32%), Gaps = 33/262 (12%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVTFTPTVQY 67
E + +DG L + P +DSG Y+C N + + + A + F Q
Sbjct: 72 EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQI 131
Query: 68 LPFRLQGVVQCH-----IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
L GV+ C + + + W KD LL+ K + V LL V
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVK-IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE 190
Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVR-------KPPAFTIKPEAMYQRKVGESVDMHCE 175
G Y C AH Q + + +R P + + +G + + C+
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI-SASLGSRLTIPCK 249
Query: 176 AQEAEGTQKPTITWQRRDGVALP-----------------KNRVKIVGGNITIEGLRRVD 218
GT T+ W + + +N + + + + R D
Sbjct: 250 VFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRED 309
Query: 219 FGY-YECVVSNEVATIVQAAQL 239
++CVV N ++ +
Sbjct: 310 LHMDFKCVVHNTLSFQTLRTTV 331
Score = 98.2 bits (244), Expect = 6e-23
Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 17/209 (8%)
Query: 69 PFRL---QGVVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
P L Q +P +TW K+ P + + + Q+G+L Q
Sbjct: 35 PVALRCPQVPYWLWASVSPRIN-LTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDS 93
Query: 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE--AEGT 182
G Y CT NA S ++ V AF + S + C
Sbjct: 94 GTYVCTTRNASYCDKMSIELRVFE-NTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDK 152
Query: 183 QKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEV----ATIV 234
I W +D + L K+ K + ++ + + D GYY CV++ I
Sbjct: 153 TDVKIQW-YKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNIT 211
Query: 235 QAAQLVVEGTQPHAPYNITGVATEFSVTL 263
++ +L ++ + I S +L
Sbjct: 212 RSIELRIKKKKEETIPVIISPLKTISASL 240
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 151 bits (383), Expect = 9e-41
Identities = 48/268 (17%), Positives = 76/268 (28%), Gaps = 43/268 (16%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
++ TL I+ +DSG++MC +N G L V + P +
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV-TTTLEVVDKGFINIFPMINTTV 323
Query: 70 FRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTK------DIVVMQNGSLLFTRVN 120
F G + +A P ++ W R + + L TR+
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383
Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
G YT N+ ++ V V P + + C A
Sbjct: 384 GTEGGTYTFLVSNSDVN--AAIAFNVYVNTKPEILTYDR-------LVNGMLQCVA---A 431
Query: 181 GTQKPTITWQRRDGV-------ALPKNRVKIVGGNI---------TIEGLRRVDFGYYEC 224
G +PTI W G LP + + +I+ G EC
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491
Query: 225 VVSNEVATIVQAAQLVVEG-----TQPH 247
N+V +G PH
Sbjct: 492 KAYNDVGKTSAYFNFAFKGNNKEQIHPH 519
Score = 118 bits (297), Expect = 4e-29
Identities = 43/259 (16%), Positives = 71/259 (27%), Gaps = 34/259 (13%)
Query: 10 TRVVIKKDGTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
R + ++I + + C V + + L V P V
Sbjct: 160 LRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV--RPAFKAVPVVSVS 217
Query: 69 PF---RLQG---VVQCHIKANPTFQYVTWTKDKRLLEP------YQTKDIVVMQNGSLLF 116
+G V C IK + Y TW ++ + + D + +L
Sbjct: 218 KASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTI 277
Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE--AMYQRKVGESVDMHC 174
+ N G + C N G+ + + V I P GE+VD+
Sbjct: 278 SSARVNDSGVFMCYANNTFGSANVT--TTLEVVDKGFINIFPMINTTVFVNDGENVDLIV 335
Query: 175 EAQEAEGTQKPT-ITWQRRDGVALPKNRVKIV----------GGNITIEGLRRVDFGYYE 223
E E KP W + + L+ + G Y
Sbjct: 336 ---EYEAFPKPEHQQW-IYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYT 391
Query: 224 CVVSNEVATIVQAAQLVVE 242
+VSN A + V
Sbjct: 392 FLVSNSDVNAAIAFNVYVN 410
Score = 108 bits (271), Expect = 1e-25
Identities = 62/434 (14%), Positives = 122/434 (28%), Gaps = 65/434 (14%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV 75
K + + ++G Y C +G+ Y+ V PAK+ Y +
Sbjct: 78 KQNEWITEKAEATNTGKYTCTNKHGLS----NSIYVFVRDPAKLFLVDRSLYGKEDNDTL 133
Query: 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQGRYTCTPYNA 134
V+C + +P + + P + + ++ V + H+ C+
Sbjct: 134 VRCPL-TDPEVTNYSLKGCQGKPLPKDLR-FIPDPKAGIMIKSVKRAYHRLCLHCSVDQE 191
Query: 135 HGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
+ S + + VR P ++ + Y + GE + C ++ TW+
Sbjct: 192 GKSV-LSEKFILKVRPAFKAVPVVSVSKAS-YLLREGEEFTVTCTIKDVS--SSVYSTWK 247
Query: 191 RRDGVALPKNRVKIV---------GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
R + + + +TI R D G + C +N + L V
Sbjct: 248 RENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 307
Query: 242 EG-----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE-QGNKDWLPIP 295
P + E +V L Y P + + W + D
Sbjct: 308 VDKGFINIFPMINTTVFVNDGE-NVDLI--VEYEAFPKPE--HQQWIYMNRTFTDKWEDY 362
Query: 296 VTPPGSTQI------TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNV 349
+ I + RL + + N + ++ V V T P +
Sbjct: 363 PKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT------KPEIL 416
Query: 350 SVTEVNNGFV-----------ISW-------QPPLERASLIQYYLIKYRTDGSWKTLNKG 391
+ + NG + I W Q + + K + +
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQS 476
Query: 392 QIRPEENSYLGEYR 405
I + G
Sbjct: 477 SIDSSAFKHNGTVE 490
Score = 85.9 bits (212), Expect = 4e-18
Identities = 50/354 (14%), Positives = 97/354 (27%), Gaps = 50/354 (14%)
Query: 26 GSDDSGLYMCEV----SNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81
G+ + ++C + G P + + + + + C
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGS-SQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDP 61
Query: 82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
V WT + + + + + G+YTCT +S
Sbjct: 62 GF-----VKWTFEILDETNEN-------KQNEWITEKAEATNTGKYTCT---NKHGLSNS 106
Query: 142 GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR 201
+ V VR P + ++Y K + C + + + G LPK+
Sbjct: 107 --IYVFVRDPAKLFLVDRSLY-GKEDNDTLVRC---PLTDPEVTNYSLKGCQGKPLPKDL 160
Query: 202 VKIV--GGNITIEGLRRV-DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATE 258
I I I+ ++R C V E +++ ++ A ++
Sbjct: 161 RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKAS 220
Query: 259 FSVTLEWLPG--------YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ------- 303
+ + G Y W RE +
Sbjct: 221 YLL----REGEEFTVTCTIKDVS--SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT 274
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
+TI+ + F N G ++ + V KG P + VN+G
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDG 328
Score = 82.8 bits (204), Expect = 4e-17
Identities = 27/171 (15%), Positives = 41/171 (23%), Gaps = 23/171 (13%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
E I+ L + + + G Y VSN + V ++
Sbjct: 359 WEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA-IAFNVYVNTKPEILT 417
Query: 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK---------RLLEPYQTKDIVVMQNG 112
+ G++QC P + W L QT + G
Sbjct: 418 YDRLV------NGMLQCVAAGFPEPT-IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFG 470
Query: 113 S----LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
H G C YN G +S + I P
Sbjct: 471 KLVVQSSIDSSAFKHNGTVECKAYNDVGK--TSAYFNFAFKGNNKEQIHPH 519
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 145 bits (368), Expect = 3e-40
Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 20/244 (8%)
Query: 17 DGTLVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV-------TFTPTVQYL 68
L I P+ + D +Y C N +GE A L V ++ P ++ +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRVNQNHQGRY 127
+ C NP + +TW KD ++P + I +++G+L + QG+Y
Sbjct: 121 ERTRTATMLCAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 128 TCTPYNAHGTQGSSG-QMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
C N+ G + SS + V V+ P F+I P + + G +V++ C A G+ P
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSH-EIMPGGNVNITCVA---VGSPMP 235
Query: 186 TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
+ W + L VG N +E D Y CV + + I AQ+ V+
Sbjct: 236 YVKW-MQGAEDLTPEDDMPVGRN-VLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL- 292
Query: 246 PHAP 249
P A
Sbjct: 293 PKAG 296
Score = 92.2 bits (229), Expect = 4e-21
Identities = 61/315 (19%), Positives = 105/315 (33%), Gaps = 35/315 (11%)
Query: 53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP--YQTKDIVVMQ 110
E P + P Q C +P + VTW K + + ++T +
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPR-VTWNKKGKKVNSQRFETIEFDESA 61
Query: 111 NGSLLFTRVNQ-NHQGRYTCTPYNAHGTQGSSGQMEVLVR-----KPPAFTIKPEAMYQR 164
L + + Y C N+ G ++ VL P + P+ +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ-LKVV 120
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN----RVKIVG-GNITIEGLRRVDF 219
+ + M C A G P ITW + D + + + R+K + G + IE D
Sbjct: 121 ERTRTATMLCAA---SGNPDPEITWFK-DFLPVDPSASNGRIKQLRSGALQIESSEETDQ 176
Query: 220 GYYECVVSNEVATIVQA---AQLVVEGTQPH---APYNITGVATEFSVTLEWLPGYSGGP 273
G YECV +N + + V+ P P + + +V + + G P
Sbjct: 177 GKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE-IMPGGNVNITCVA--VGSP 233
Query: 274 DLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 333
YV W + G +D P P G + + + + Y V + LG
Sbjct: 234 MP---YVKWMQ--GAEDLTPEDDMPVGRNVLELTDVKDSANY--TCVAMSSLGVIEAVAQ 286
Query: 334 VVVKTKGPKPGPPRN 348
+ VK+ +
Sbjct: 287 ITVKSLPKAGTKHHH 301
Score = 87.6 bits (217), Expect = 2e-19
Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 19/163 (11%)
Query: 4 KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
+ R+ + G L I D G Y C +N G ++ A L V +V
Sbjct: 150 DPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV----RVQNVA 205
Query: 64 TVQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF 116
+ ++ C +P V W + L P M G +
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPY-VKWMQGAEDLTPEDD-----MPVGRNVL 259
Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
+ YTC ++ G + Q + V+ P K
Sbjct: 260 ELTDVKDSANYTCVAMSSLGVIEAVAQ--ITVKSLPKAGTKHH 300
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 146 bits (370), Expect = 1e-38
Identities = 81/359 (22%), Positives = 131/359 (36%), Gaps = 44/359 (12%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQG 74
+LVIN V D G Y C+ N +G A+ A L ++ P +
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGA-VASSAVLVIKERKLPPSFARKLKDVHETLGFPV 119
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYN 133
+C I + Q V+W KD LL+ + +L + +Q+H G+Y C+ N
Sbjct: 120 AFECRINGSEPLQ-VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Query: 134 AHGTQGSSGQMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
GT SS ++ + + PP F +KP ++ +GES C GT ITW +
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFFDLKPVSV-DLALGESGTFKC---HVTGTAPIKITW-AK 233
Query: 193 DGVALPKN-RVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH 247
D + K+ +T+ + + D G Y C SN +AQL V+ P
Sbjct: 234 DNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-PPR 292
Query: 248 ---APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP------ 298
V + E G P++K V+WY++ I +
Sbjct: 293 FIKKLEPSRIVKQDEHTRYECK--IGGSPEIK---VLWYKD-ET----EIQESSKFRMSF 342
Query: 299 -PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP---GPPRNVSVTE 353
+ + L+ + ++ N G S + VK P P V +
Sbjct: 343 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVETLK 398
Score = 145 bits (368), Expect = 2e-38
Identities = 75/361 (20%), Positives = 124/361 (34%), Gaps = 37/361 (10%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---EFPAKVTFTPTVQY 67
I TL I G Y C SN +G + A L + E P P
Sbjct: 150 TSFIHNVATLQILQTDQSHVGQYNCSASNPLGTAS-SSAKLTLSEHEVPPFFDLKPVSVD 208
Query: 68 LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGR 126
L G +CH+ + +TW KD R + P + +++ +L +V + G+
Sbjct: 209 LALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 267
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
YTC N G S Q + V++PP F K E K E C + G+ +
Sbjct: 268 YTCYASNVAGKDSCSAQ--LGVQEPPRFIKKLEPSRIVKQDEHTRYEC---KIGGSPEIK 322
Query: 187 ITWQRRDGVALPKN---RVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
+ W +D + ++ R+ V + + L D G Y C N + + L V
Sbjct: 323 VLW-YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381
Query: 242 EG----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP---- 293
+ + P+ + V LE G P + V W++ +K L
Sbjct: 382 KEPPVFRKK--PHPVE-TLKGADVHLECEL--QGTPPFQ---VSWHK---DKRELRSGKK 430
Query: 294 IPVTPPGSTQI-TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVT 352
+ I + A E+Q N++G + +K ++S
Sbjct: 431 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTV 490
Query: 353 E 353
Sbjct: 491 V 491
Score = 143 bits (361), Expect = 2e-37
Identities = 56/241 (23%), Positives = 85/241 (35%), Gaps = 20/241 (8%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
++ L + + +DSG Y CE N G + L V+ P P
Sbjct: 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS-SSTSLKVKEPPVFRKKPHPVETL 397
Query: 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGR 126
++C ++ P FQ V+W KDKR L K +M S+ V+ G
Sbjct: 398 KGADVHLECELQGTPPFQ-VSWHKDKRELRS--GKKYKIMSENFLTSIHILNVDSADIGE 454
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
Y C N G+ G + + PP F K + VGE V + EG + +
Sbjct: 455 YQCKASNDVGSDTCVGSITLKA--PPRFVKKLSDIST-VVGEEVQLQA---TIEGAEPIS 508
Query: 187 ITWQRRDGVALPKNRVKI------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240
+ W +D + + I + + G Y C + NE T A L
Sbjct: 509 VAW-FKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567
Query: 241 V 241
V
Sbjct: 568 V 568
Score = 140 bits (354), Expect = 2e-36
Identities = 76/326 (23%), Positives = 130/326 (39%), Gaps = 35/326 (10%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG-- 74
TL + V D+G Y C SN G+ + A L V+ P + + Q
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRI--VKQDEH 308
Query: 75 -VVQCHIKANPTFQYVTWTKDKRLLEP-YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132
+C I +P + V W KD+ ++ + + V L ++ G YTC +
Sbjct: 309 TRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 367
Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
NA G+ SS + V++PP F KP + G V + CE Q GT ++W +
Sbjct: 368 NAAGSASSS--TSLKVKEPPVFRKKPHPVET-LKGADVHLECELQ---GTPPFQVSW-HK 420
Query: 193 DGVALPKN-RVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG---- 243
D L + KI+ + I + D G Y+C SN+V + + ++
Sbjct: 421 DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF 480
Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG--NKDWLPIPVTPPGS 301
+ +I+ V E V L+ G + V W++++G ++ I ++ +
Sbjct: 481 VKK--LSDISTVVGE-EVQLQA--TIEGAEPIS---VAWFKDKGEIVRESDNIWISYSEN 532
Query: 302 TQI-TINRLTPATTYEFQVVGKNELG 326
+R PA ++ KNE G
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAG 558
Score = 106 bits (266), Expect = 7e-25
Identities = 57/294 (19%), Positives = 112/294 (38%), Gaps = 31/294 (10%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNAH 135
QC + P + W K+ L + N SL+ +V+ + G YTC N+
Sbjct: 26 QCKVDGTPEIRI-AWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSV 84
Query: 136 GTQGSSGQMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
G SS + + RK PP+F K + +++ +G V C G++ ++W +DG
Sbjct: 85 GAVASSAVLVIKERKLPPSFARKLKDVHET-LGFPVAFEC---RINGSEPLQVSW-YKDG 139
Query: 195 VALPKN-RVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP--- 246
L + ++ + I + G Y C SN + T +A+L + +
Sbjct: 140 ELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF 199
Query: 247 --HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPGS 301
P ++ +A S T + +G +K + W ++ + + +
Sbjct: 200 FDLKPVSVD-LALGESGTFKCH--VTGTAPIK---ITWAKDNREIRPGGNYKMTLVENTA 253
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK--PGPPRNVSVTE 353
T +T+ ++T ++ N G S + V+ P+ + V +
Sbjct: 254 T-LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP-PRFIKKLEPSRIVKQ 305
Score = 89.9 bits (223), Expect = 2e-19
Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 7/142 (4%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
+ I + ++ I V S D G Y C+ SN +G + ++ P + +
Sbjct: 430 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDIS 488
Query: 68 LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ--NGSLLFTRVNQNHQG 125
+ +Q I+ V W KDK + + +L F+R + G
Sbjct: 489 TVVGEEVQLQATIEGAEPIS-VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547
Query: 126 RYTCTPYNAHGTQGSSGQMEVL 147
+YTC N GTQ + VL
Sbjct: 548 KYTCQIKNEAGTQECFATLSVL 569
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 142 bits (360), Expect = 2e-38
Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 26/246 (10%)
Query: 9 ETRVVIKKDGTLVINPVG-SDDSGLYMCEVSNGIGEPQAAQAY---LNVEFPAKVTFTPT 64
+ + ++ G L I VG D Y C + + A L + P + T
Sbjct: 155 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214
Query: 65 VQYLPFRLQGVV------QCHIKANPTFQYVTWTKDKRLL---EPYQTKDIVVMQNGSLL 115
+ L+ +V C + P W K + D V +G+L+
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPS-FRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 273
Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE 175
G+Y C N+ G + + V P + I P G C
Sbjct: 274 IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQT-VDFGRPAVFTC- 329
Query: 176 AQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ 235
+ G T++W +DG A+ + + IE +++ D G Y+C V N+ +
Sbjct: 330 --QYTGNPIKTVSW-MKDGKAIGHS-----ESVLRIESVKKEDKGMYQCFVRNDRESAEA 381
Query: 236 AAQLVV 241
+A+L +
Sbjct: 382 SAELKL 387
Score = 121 bits (305), Expect = 8e-31
Identities = 67/349 (19%), Positives = 109/349 (31%), Gaps = 40/349 (11%)
Query: 3 TKVGSLETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEFP 56
T VG + I DG LV P ++D + +Y C N G + ++
Sbjct: 44 TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 103
Query: 57 AKVTFTPTVQYLPFRLQGVVQCHIKA-NPTFQY-VTWTKDKRLL---EPYQTKDIVVMQN 111
+++ V++C I + F V+W D+ +V+ +
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163
Query: 112 GSLLFTRVNQN-HQGRYTCTPYNAHG-TQGSSGQMEVLVRKPPAFTIKPEAMYQR----- 164
G L V Y C + S LV P + P
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223
Query: 165 -KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK------NRVKIVGGNITIEGLRRV 217
V ++ + C AQ G P+ W + K +RVK V G + I+
Sbjct: 224 LMVAHTISLLCPAQ---GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280
Query: 218 DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQ 277
D G Y CVV+N V L V A + +F + Y+G P
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT- 338
Query: 278 NYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
V W ++ + S + I + +Q +N+
Sbjct: 339 --VSWMKDG-------KAIGHSESV-LRIESVKKEDKGMYQCFVRNDRE 377
Score = 82.7 bits (204), Expect = 2e-17
Identities = 28/191 (14%), Positives = 58/191 (30%), Gaps = 18/191 (9%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN------QNHQGRYT 128
++C NP + W + + +G L+F + H Y
Sbjct: 23 EIECKASGNPMPEI-IWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 81
Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
C N G+ S + V + + G S + C ++
Sbjct: 82 CLARNQFGSIISR-DVHVRAVVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVS 139
Query: 189 WQRRDG-----VALPKNRVKIV-GGNITIEGLRRVD-FGYYECVVSNEVA--TIVQAAQL 239
W + A + ++ G + I + D + Y+C + + T + A +
Sbjct: 140 WHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKG 199
Query: 240 VVEGTQPHAPY 250
+ T+P +
Sbjct: 200 RLVITEPISSS 210
Score = 69.2 bits (169), Expect = 6e-13
Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 26/175 (14%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL---PKNRVKIVG 206
K P F +P ++ C+A G P I W R DG A+ P R
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKA---SGNPMPEIIWIRSDGTAVGDVPGLRQISSD 58
Query: 207 GNITIEGLRRVDF------GYYECVVSNEVATIVQAAQLVVEGTQPH---APYNITGVAT 257
G + R D+ Y C+ N+ +I+ V + +
Sbjct: 59 GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRG 118
Query: 258 EFSVTLEW-LPGYSGGPDLKQNYVIWYREQGNKDWLPIP------VTPPGSTQIT 305
S ++ +P + V W+ ++ + V P G I
Sbjct: 119 N-SAVIKCLIPSFVADF---VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 169
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 140 bits (353), Expect = 2e-36
Identities = 54/313 (17%), Positives = 99/313 (31%), Gaps = 46/313 (14%)
Query: 165 KVGESVDMHCEAQE----AEGTQKPTITWQRRDGVALPKNRVKIVG---GNITIEGLRRV 217
++ + C +E I W + + +PK + I+ ++T + +
Sbjct: 16 QLHSNFTAVCVLKEKCMDYFHVNANYIVW-KTNHFTIPKEQYTIINRTASSVTFTDIASL 74
Query: 218 DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF-SVTLEWLPGYSGGPDLK 276
+ +++ ++ G P P N++ + E + EW G +
Sbjct: 75 NIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLE-- 132
Query: 277 QNYVIWYREQGNKDWLPIPVTPPGSTQITINR-LTPATTYEFQVVGKNELGDGMLSNIVV 335
N+ + +K + T T++ E V +N LG +I
Sbjct: 133 TNFTLKSEWATHK-FADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINF 191
Query: 336 VKTKGPKPGPPRNVSVTEVNNGF---VISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
KP PP N+SV ++W P ++ +I Y I
Sbjct: 192 DPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI--------------- 236
Query: 393 IRPEENSYLGEYREQGNKDW--LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG- 449
+YR + W +P T + T+ L P T Y F++ E G G
Sbjct: 237 ----------QYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 286
Query: 450 --MLSNIVVVKTK 460
S T
Sbjct: 287 WSDWSEEASGITY 299
Score = 105 bits (262), Expect = 2e-24
Identities = 63/404 (15%), Positives = 115/404 (28%), Gaps = 60/404 (14%)
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
C + Y+ W + + Q I+ S+ FT + + + TC
Sbjct: 31 CMDYFHVNANYIVWKTNHFTIPKEQYT-IINRTASSVTFTDIA-SLNIQLTCNILTFGQL 88
Query: 138 QGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE-AQEAEGTQKPTITWQRRDGVA 196
+ + + ++ PP KP+ + V E M CE E + T +
Sbjct: 89 EQNVYGITIISGLPPE---KPKNL-SCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATH 144
Query: 197 LPKNRVKIVGGN---ITIEGLRRVDFGYYECVVSNEV--ATIVQAAQLVVEGTQPHAPYN 251
+ N + T V +P+ P+N
Sbjct: 145 KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN 204
Query: 252 ITGVATEF---SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW--LPIPVTPPGSTQITI 306
++ + +E + L W + Y I YR + W +P T + T+
Sbjct: 205 LSVINSEELSSILKLTWTNPSIKSVII-LKYNIQYRTKDASTWSQIPPEDTASTRSSFTV 263
Query: 307 NRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPGPP------RNVSVTEVNNG 357
L P T Y F++ E G G S T +P + S T+
Sbjct: 264 QDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRT 323
Query: 358 FVISWQ--PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
+ W+ PP E I Y + +
Sbjct: 324 VQLVWKTLPPFEANGKILDYEVTLT--------------------------RWKSHLQNY 357
Query: 416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
V +T++T+ Y + +N +G + + +
Sbjct: 358 TVN---ATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIPAC 396
Score = 94.3 bits (234), Expect = 8e-21
Identities = 35/225 (15%), Positives = 59/225 (26%), Gaps = 34/225 (15%)
Query: 240 VVEGTQPHAPYNITGVATEFSVTLEW-LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
+ H ++ + + +EW P S + + V+ + DW T
Sbjct: 395 ACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTV 454
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGF 358
L + Y V G G + K P V +V
Sbjct: 455 --HRTYLRGNLAESKCYLITVTPVYADGPGSPE-SIKAYLKQAPPSKGPTVRTKKVGKNE 511
Query: 359 V-ISWQ--PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
+ W P + I+ Y I YRT + +
Sbjct: 512 AVLEWDQLPVDVQNGFIRNYTIFYRTIIG--------------------------NETAV 545
Query: 416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
V T+ T++ LT T Y ++ + G K
Sbjct: 546 NVDSS-HTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTPK 589
Score = 82.0 bits (202), Expect = 8e-17
Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 40/220 (18%)
Query: 242 EGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQGNKDWLPIPV 296
+ + + +V L W P + N Y + V
Sbjct: 305 KAPSFWYKIDPSHTQGYRTVQLVWKTL----PPFEANGKILDYEVTLTR-WKSHLQNYTV 359
Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNN 356
+T++T+ Y + +N +G + + + P ++ +N
Sbjct: 360 N---ATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDN 414
Query: 357 GFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
+ W P E ++ Y++++ + DW
Sbjct: 415 MLWVEWTTPRES---VKKYILEWCVLSD--------------------KAPCITDWQQED 451
Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
T L + Y V G G +I
Sbjct: 452 GTV--HRTYLRGNLAESKCYLITVTPVYADGPGSPESIKA 489
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 132 bits (333), Expect = 8e-36
Identities = 40/232 (17%), Positives = 72/232 (31%), Gaps = 19/232 (8%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV 75
+ I +DSG Y C+ +V+ + P L+
Sbjct: 46 STPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALR-- 103
Query: 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
CH + V + ++ + + + N +L + N +H G Y C+ H
Sbjct: 104 --CHAWKDKLVYNVLYYRNGKAFKFFH-------WNSNLTILKTNISHNGTYHCSGMGKH 154
Query: 136 GTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
+ + V P + G V + CE + Q+P +
Sbjct: 155 RYTSAGISVTVKELFPAPVLNASVTS--PLLEGNLVTLSCETKLL--LQRPGLQLYFSFY 210
Query: 195 VALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA---AQLVVEG 243
+ R + I RR D G Y C + E +++ +L V G
Sbjct: 211 MGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 71.9 bits (176), Expect = 2e-14
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 21/166 (12%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C + P W + + S T + N G Y C +
Sbjct: 22 HCEVLHLPGSSSTQWFLNGTATQT---------STPSYRITSASVNDSGEYRCQRGLS-- 70
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
G S +++ + + ++ GE + + C A + + + R+G A
Sbjct: 71 --GRSDPIQLEIHRGWLLLQVSSRVFT--EGEPLALRCHA--WKDKLVYNVLY-YRNGKA 123
Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
N+TI G Y C + + V+
Sbjct: 124 FKFFH---WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Score = 45.7 bits (108), Expect = 1e-05
Identities = 32/210 (15%), Positives = 61/210 (29%), Gaps = 40/210 (19%)
Query: 146 VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV 205
V+ +PP ++ E+V +HCE + W +G A +
Sbjct: 3 VITLQPPWVSVF--------QEETVTLHCEV--LHLPGSSSTQW-FLNGTATQTS----- 46
Query: 206 GGNITIEGLRRVDFGYYECVV-----SNEVATIVQAAQLVVEGTQPHAPYNITGVATEFS 260
+ I D G Y C S+ + + L+++ +
Sbjct: 47 TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQ-----VSSRV--FTEGEP 99
Query: 261 VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 320
+ L + V++Y ++ S +TI + + +
Sbjct: 100 LALRCHA--WKDKLVYN--VLYY-----RNGKAFKFFHWNSN-LTILKTNISHNGTYHCS 149
Query: 321 GKNELGDGMLSNIVVVKTKGPKPGPPRNVS 350
G + S + V K P P N S
Sbjct: 150 GMGKH--RYTSAGISVTVKELFPAPVLNAS 177
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 129 bits (327), Expect = 1e-35
Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 34/219 (15%)
Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P P ++ T+ SVTL W P G +NY++ RE K + + T T
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTV-ATNCHKTSW 64
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQ 363
+++L +Y F+V+ +NE G G+ + +P PP +++ +V N +SW+
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWE 124
Query: 364 PPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422
P S I Y++ E + +G+ W
Sbjct: 125 KPEHDGGSRILGYIV-------------------------EMQTKGSDKW--ATCATVKV 157
Query: 423 TQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVK 458
T+ TI L Y F+V +NE G LS V+ K
Sbjct: 158 TEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 73.1 bits (180), Expect = 3e-15
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
PGPP+++ V EV V ++W PPL S I+ Y++
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIV---------------------- 42
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
E RE K + + T T +++L +Y F+V+ +NE G G+ +
Sbjct: 43 ---EKRESTRKAYSTV-ATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVK 98
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 129 bits (326), Expect = 2e-35
Identities = 46/227 (20%), Positives = 78/227 (34%), Gaps = 34/227 (14%)
Query: 237 AQLVVEGTQPHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIP 295
A L T P +P + +++ P +GG + Y +R G + W
Sbjct: 1 APLAQADT-PSSPSIDQVEPYSSTAQVQFDEPEATGGVPI-LKYKAEWRAVGEEVWHSKW 58
Query: 296 VT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP-GPPRNVSV 351
+TI L P TTY ++ N G G +S KT+ + P+
Sbjct: 59 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQ 118
Query: 352 TEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNK 410
+ + ++ + S I++YL++YR S
Sbjct: 119 MGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS-------------------------- 152
Query: 411 DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
+W P P GS + + L YE VV +N+ G ++ V
Sbjct: 153 EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFR 199
Score = 66.0 bits (161), Expect = 1e-12
Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 29/123 (23%)
Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
P P V ++ + + P I Y
Sbjct: 8 TPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKA----------------------- 44
Query: 401 LGEYREQGNKDWLPIPVT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
E+R G + W +TI L P TTY ++ N G G +S
Sbjct: 45 --EWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 102
Query: 458 KTK 460
KT+
Sbjct: 103 KTQ 105
Score = 64.1 bits (156), Expect = 4e-12
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 240 VVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP 299
V E + P + S+ + + GG + ++Y++ YR + +W P P
Sbjct: 107 VREPSAPKLEGQMGEDGN--SIKVNLIKQDDGGSPI-RHYLVRYRALSS-EWKPEIRLPS 162
Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
GS + + L YE VV +N+ G ++ V
Sbjct: 163 GSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHH 206
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 134 bits (337), Expect = 5e-35
Identities = 35/250 (14%), Positives = 73/250 (29%), Gaps = 23/250 (9%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
E + K V++ + D C N +G ++ T
Sbjct: 183 CKEESPAVVKKEEKVLHELFGTD---IRCCARNELGR--ECTRLFTIDLNQTPQTTLPQL 237
Query: 67 YLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKDI-------VVMQNGSLLFTR 118
+L ++C + N F +TW + + LE ++ +++ +
Sbjct: 238 FLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSS 296
Query: 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAM-YQRKVGESVDMHCEAQ 177
V +N G YTC+ + S + ++ + Y+ E
Sbjct: 297 VARNDTGYYTCS---SSKHPSQSALVTIVE--KGFINATNSSEDYEIDQYEEFCFSVRF- 350
Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237
+ + TW + + G +I+ + G Y N+ A +
Sbjct: 351 --KAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMF 408
Query: 238 QLVVEGTQPH 247
L + H
Sbjct: 409 TLNIRSGTKH 418
Score = 122 bits (307), Expect = 6e-31
Identities = 47/352 (13%), Positives = 99/352 (28%), Gaps = 55/352 (15%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
+ + ++VI + +G Y+ + + +++ T
Sbjct: 96 DLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRRPYFRKME 154
Query: 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
Q + C ++ P V W E + + V++ + + C
Sbjct: 155 N-QDALVCISESVPEPI-VEWVLCDSQGESCKEESPAVVKKEEKVLHEL---FGTDIRCC 209
Query: 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
N G + + + ++ KVGE + + C+A +TW
Sbjct: 210 ARNELGRECTR---LFTIDLNQTPQTTLPQLF-LKVGEPLWIRCKA--VHVNHGFGLTW- 262
Query: 191 RRDGVALPK-----------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
+ AL + NR I + + R D GYY C S + Q+A +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319
Query: 240 VVEG----TQPHAPYNIT---GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL 292
+ ++ + FSV + P ++ W +
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVR------FKAYPQIR---CTWTFSRK----- 365
Query: 293 PIPVTP---PGSTQITINRLTP--ATTYEFQVVGKNELGDGMLSNIVVVKTK 339
P I+ Y F +N+ + +++
Sbjct: 366 SFPCEQKGLDNGYSISKFCNHKHQPGEYIFHA--ENDDAQFTKMFTLNIRSG 415
Score = 114 bits (286), Expect = 6e-28
Identities = 40/343 (11%), Positives = 79/343 (23%), Gaps = 32/343 (9%)
Query: 22 INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL---PFRLQGVVQC 78
N S Y + P+ L + V V+ LQ
Sbjct: 19 NNDSSVGKSSSYPMVSES----PEDLGCALRPQSSGTVYEAAAVEVDVSASITLQ----V 70
Query: 79 HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138
+ A W L D+ S++ ++ + G Y +
Sbjct: 71 LVDAPGNIS-CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN- 128
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
+ V +R +T++ Y RK+ + C +E +P + W D
Sbjct: 129 -YTILFTVSIRNTLLYTLRRP--YFRKMENQDALVC---ISESVPEPIVEWVLCDSQGES 182
Query: 199 KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATE 258
+ L + C NE+ + P +
Sbjct: 183 CKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVG 242
Query: 259 FSVTLEWLPGYSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPGSTQITINRLT-PATT 314
+ + + W E ++ + T I I +
Sbjct: 243 EPLWIR-CKAVHVNHGFG---LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA 298
Query: 315 YE----FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTE 353
+ L +V K + + +
Sbjct: 299 RNDTGYYTCSSSKHPSQSALVT-IVEKGFINATNSSEDYEIDQ 340
Score = 79.3 bits (195), Expect = 4e-16
Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 12/151 (7%)
Query: 4 KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
++ + T + + ++ V +D+G Y C S + A + + + T
Sbjct: 276 EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATN 331
Query: 64 TVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ 121
+ + KA P + TWT ++ + + S+ ++
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIR-CTWTFSRKSFPC---EQKGLDNGYSISKFCNHK 387
Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
+ G Y N + + +R
Sbjct: 388 HQPGEYIFHAENDDAQ--FTKMFTLNIRSGT 416
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 127 bits (322), Expect = 8e-35
Identities = 39/224 (17%), Positives = 68/224 (30%), Gaps = 32/224 (14%)
Query: 240 VVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD-WLPIPVTP 298
+V+ P+AP + W + +Y I + W
Sbjct: 1 IVQDV-PNAPKLTGITCQADKAEIHWEQQGDNRSPI-LHYTIQFNTSFTPASWDAAYEKV 58
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKP-GPPRNVSVTEVNN 356
P + + +++P Y F+V+ N++G S T+ P P NV
Sbjct: 59 PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEP 118
Query: 357 G-FVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWL 413
VISW P E + +Y + ++ R+ W
Sbjct: 119 NNLVISWTPMPEIEHNAPNFHYYVSWK------------------------RDIPAAAWE 154
Query: 414 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
+ I I Y +VV N+ G+ ++ VV
Sbjct: 155 NNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVV 198
Score = 61.7 bits (150), Expect = 3e-11
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 246 PHAPYNITGVA-TEFSVTLEWLP---GYSGGPDLKQNYVIWYREQ-GNKDWLPIPVTPPG 300
P N+ G ++ + W P P+ Y + ++ W +
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFH--YYVSWKRDIPAAAWENNNIFDWR 162
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG 340
I I Y +VV N+ G+ ++ VV G
Sbjct: 163 QNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG 202
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 133 bits (335), Expect = 4e-34
Identities = 34/265 (12%), Positives = 75/265 (28%), Gaps = 39/265 (14%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
++ + T + + ++ V +D+G Y C S + A + + +
Sbjct: 274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS----ALVTIVEKGFINA 329
Query: 62 TPTVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV 119
T + + KA P + TWT ++ Q + S+
Sbjct: 330 TNSSEDYEIDQYEEFCFSVRFKAYPQIR-CTWTFSRKSFPCEQK---GLDNGYSISKFCN 385
Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA 179
+++ G Y N + + +R+ P + + C +
Sbjct: 386 HKHQPGEYIFHAENDDAQ--FTKMFTLNIRRKPQVLAE---------ASASQASC---FS 431
Query: 180 EGTQKPTITWQRRDG---------------VALPKNRVKIVGGNITIEGLRRVDFGYYEC 224
+G P+ TW++ + + T+ + +C
Sbjct: 432 DGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC 491
Query: 225 VVSNEVATIVQAAQLVVEGTQPHAP 249
N + T + L G P
Sbjct: 492 CAYNSLGTSCETILLNSPGPFPFIQ 516
Score = 122 bits (306), Expect = 3e-30
Identities = 48/373 (12%), Positives = 96/373 (25%), Gaps = 58/373 (15%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
E + K V++ C N +G +++ + T
Sbjct: 185 EESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLF--- 238
Query: 69 PFRLQG---VVQCHIK-ANPTFQYVTWTKDKRLLEP-------YQTKDIVVMQNGSLLFT 117
G ++C N F +TW + + LE + + +++ +
Sbjct: 239 --LKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295
Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE-AMYQRKVGESVDMHCEA 176
V +N G YTC+ V + + Y+ E
Sbjct: 296 SVARNDTGYYTCSSSKHPSQS-----ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF 350
Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGGN-ITIEGLRRVDFGYYECVVSNEVATIVQ 235
+ + TW + P + + G I+ + G Y N+ A +
Sbjct: 351 ---KAYPQIRCTW-TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK 406
Query: 236 AAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP 295
L + +P +A + G P W +
Sbjct: 407 MFTLNIR-RKPQV------LAEASASQASCFS--DGYPLPS---WTWKKCSDKSPNCTEE 454
Query: 296 VTPPGSTQI-------------TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK 342
+T + T+N + + N LG + ++ GP
Sbjct: 455 ITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS--PGPF 512
Query: 343 PGPPRNVSVTEVN 355
P + +
Sbjct: 513 PFIQDGGTKHHHH 525
Score = 112 bits (280), Expect = 8e-27
Identities = 48/349 (13%), Positives = 103/349 (29%), Gaps = 49/349 (14%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
+ + ++VI + +G Y+ + + +++ T
Sbjct: 96 DLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRRPYFRKME 154
Query: 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
Q + C ++ P V W E + + V++ + +++ C
Sbjct: 155 N-QDALVCISESVPEPI-VEWVLCDSQGESCKEESPAVVKKEEKV---LHELFGTDIRCC 209
Query: 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
N G + + + + + P T+ + KVGE + + C+A +TW
Sbjct: 210 ARNELG-RECTRLFTIDLNQTPQTTLPQLFL---KVGEPLWIRCKA--VHVNHGFGLTW- 262
Query: 191 RRDGVALPK-----------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
+ AL + NR I + + R D GYY C S + Q+A +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319
Query: 240 VVEG----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP 295
+ ++ + E + P ++ W + P
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYE-EFCFS--VRFKAYPQIR---CTWTFSRK-----SFP 368
Query: 296 VTP---PGSTQITINRLTP--ATTYEFQVVGKNELGDGMLSNIVVVKTK 339
I+ Y F +N+ + ++ K
Sbjct: 369 CEQKGLDNGYSISKFCNHKHQPGEYIFHA--ENDDAQFTKMFTLNIRRK 415
Score = 108 bits (271), Expect = 1e-25
Identities = 40/345 (11%), Positives = 85/345 (24%), Gaps = 31/345 (8%)
Query: 22 INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81
N S Y + P+ L + + + +Q +
Sbjct: 19 NNDSSVGKSSSYPMVSES----PEDLGCALRPQSS-GTVYEAAAVEVDVSASITLQVLVD 73
Query: 82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
A W L D+ S++ ++ + G Y + +
Sbjct: 74 APGNIS-CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN--YT 130
Query: 142 GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR 201
V +R +T++ Y RK+ + C +E +P + W D
Sbjct: 131 ILFTVSIRNTLLYTLRRP--YFRKMENQDALVC---ISESVPEPIVEWVLCDSQGESCKE 185
Query: 202 VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSV 261
+ L + C NE+ + P + +
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPL 245
Query: 262 TLE-WLPGYSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPGSTQI-----TINRLTPA 312
+ + G + W E ++ + T I ++ +
Sbjct: 246 WIRCKAVHVNHGFG-----LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300
Query: 313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
T + S +V + KG + E++
Sbjct: 301 DTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDY-EIDQY 341
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 125 bits (316), Expect = 3e-33
Identities = 40/247 (16%), Positives = 78/247 (31%), Gaps = 24/247 (9%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+V K + + +G Y C SNG+ + Y+ V PAK+ +
Sbjct: 49 NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT----SSIYVFVRDPAKLFLVGLPLFGK 104
Query: 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
+V+C + + + P + + G + H+ C
Sbjct: 105 EDSDALVRCPLTDPQV-SQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRC 163
Query: 130 TPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
GT S + + VR+ P ++ + + K G++ + C + + +
Sbjct: 164 AAQR-DGTWLHSDKFTLKVREAIKAIPVVSVPETS-HLLKKGDTFTVVCTIK--DVSTSV 219
Query: 186 TITWQRRDGVALPKNRVKIVG-----------GNITIEGLRRVDFGYYECVVSNEVATIV 234
W + + +VK +TI R D G + C +N +
Sbjct: 220 NSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSAN 279
Query: 235 QAAQLVV 241
L V
Sbjct: 280 VTTTLKV 286
Score = 78.2 bits (192), Expect = 2e-16
Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 18/177 (10%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
V WT E + K + + G YTC+ SS + V V
Sbjct: 40 VRWTFKTYFNEMVENKK------NEWIQEKAEATRTGTYTCS---NSNGLTSS--IYVFV 88
Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--G 206
R P + ++ K + C Q + DG +LP + +
Sbjct: 89 RDPAKLFLVGLPLF-GKEDSDALVRCPL---TDPQVSQYSLIECDGKSLPTDLTFVPNPK 144
Query: 207 GNITIEGLRRV-DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVT 262
ITI+ ++R C + + + A ++ T +
Sbjct: 145 AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLK 201
Score = 69.0 bits (168), Expect = 3e-13
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 12/146 (8%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV----EFPAKVTFTPTVQYLPFR 71
K G + N + C + + L V + V+ T L
Sbjct: 144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203
Query: 72 LQGVVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQ-------NGSLLFTRVNQNH 123
V C IK T W K + Q K + +L + +
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263
Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVR 149
G + C N G+ + ++V+ +
Sbjct: 264 SGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 40.5 bits (94), Expect = 6e-04
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210
PP+ + G+++ + C + W + V+
Sbjct: 12 PPSIHPAQSELIVE-AGDTLSLTCIDP-------DFVRWTFKTY---FNEMVENKKNEWI 60
Query: 211 IEGLRRVDFGYYECVVSNEVATIV 234
E G Y C SN + + +
Sbjct: 61 QEKAEATRTGTYTCSNSNGLTSSI 84
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 126 bits (317), Expect = 6e-33
Identities = 40/245 (16%), Positives = 73/245 (29%), Gaps = 20/245 (8%)
Query: 16 KDGTLVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
K+G L I +D Y+C V+ G+ ++ P +
Sbjct: 87 KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
+ C I + +TW K+ + L TK +L+ GRY C +
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTK--YSQSGQNLIIHNPELEDSGRYDCYVHYD 204
Query: 135 HGTQGSSGQM------EVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ-EAEGTQKPTI 187
+ + V+ + F + + +GE ++ C A + I
Sbjct: 205 DVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLI 264
Query: 188 TWQRRDGVALP---------KNRVKIVGGNITIEGLRRVDFGY-YECVVSNEVATIVQAA 237
W+ G + + I + E + G Y C N
Sbjct: 265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT 324
Query: 238 QLVVE 242
+V+E
Sbjct: 325 TVVLE 329
Score = 91.4 bits (226), Expect = 1e-20
Identities = 50/291 (17%), Positives = 82/291 (28%), Gaps = 29/291 (9%)
Query: 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQG 125
+ N V W K + P + ++NG L N
Sbjct: 48 SAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR----VKNGDLWIANYTSNDSHR 103
Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
RY CT +G G + +RKPP+ + + +D++C
Sbjct: 104 RYLCTVTTKNGDC-VQGIVRSHIRKPPSCIPETYELGTH-DKYGIDLYCGI--LYAKHYN 159
Query: 186 TITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
ITW ++ L + K G N+ I D G Y+C V + I +
Sbjct: 160 NITW-YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK 218
Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYS--------GGPDLKQNYVI-WYREQGNKDWLPI 294
P + G L + +I W G L
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278
Query: 295 PVTPPGSTQ-------ITINRLTPATT-YEFQVVGKNELGDGMLSNIVVVK 337
V ++ + +T + G N D L+ VV++
Sbjct: 279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 64.9 bits (157), Expect = 1e-11
Identities = 22/158 (13%), Positives = 45/158 (28%), Gaps = 18/158 (11%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAA-----QAYLNVEFPAKVTF 61
++ + L+I+ +DSG Y C V + L V F
Sbjct: 171 IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRF 230
Query: 62 TPTVQYLPFRLQG---VVQCHIKANPTFQY---VTWTKDKRLLEPYQTKDIVV------M 109
+ G + C + + W + + +
Sbjct: 231 KLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGI 290
Query: 110 QNGSLLFTRVNQNHQGR-YTCTPYNAHGTQGSSGQMEV 146
+L F V + + G YTC +N + + + + +
Sbjct: 291 TEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 51.8 bits (123), Expect = 2e-07
Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 16/213 (7%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQE------AEGTQKPTITWQRRDGVALPKNRVKI 204
P+ +GE C E + + W++ P NR ++
Sbjct: 28 NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR-RV 86
Query: 205 VGGNITIEGLRRVDFG-YYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
G++ I D Y C V+ + VQ P + T +
Sbjct: 87 KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146
Query: 264 EWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTP--ATTYEFQVVG 321
+ G N + WY+ + G + I+ + Y+ V
Sbjct: 147 DLYCGILYAK--HYNNITWYKNNQELIIDGTKYSQSGQN-LIIHNPELEDSGRYDCYV-- 201
Query: 322 KNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV 354
+ + ++IVV + K P ++ +
Sbjct: 202 HYDDV-RIKNDIVVSRCKILTVIPSQDHRFKLI 233
Score = 35.6 bits (81), Expect = 0.024
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 1 MNTKVGSLETRVVIKKDGTLVINPVGSDDSG-LYMCEVSNGIGEPQAAQAYLNVE 54
++ V S+ T + TL V + G Y C N + + + +E
Sbjct: 276 LDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD-KTLTTTVVLE 329
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 130 bits (328), Expect = 1e-32
Identities = 75/470 (15%), Positives = 128/470 (27%), Gaps = 60/470 (12%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT---PTVQYLPFRL 72
L I+ + + +++G A + P T +
Sbjct: 121 NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQ 180
Query: 73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTC 129
QC W + + + + V + G+Y C
Sbjct: 181 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 240
Query: 130 TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI-- 187
G G S E++V++PP P+ + ++ + +G P +
Sbjct: 241 MIRTEGGV-GISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDG---PIVAR 296
Query: 188 TWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVV-------------SNEVATIV 234
+ +R + + I L YE V + T
Sbjct: 297 EVEYCTASGSWNDRQPVDSTSYKIGHLDP--DTEYEISVLLTRPGEGGTGSPGPALRTRT 354
Query: 235 QAAQLVVEGTQPHAPYNITGVATE-FSVTLEWL-PGYSGGPDLKQNYVIWYREQGN---- 288
+ A P + V + +T+ W GY+ N + Y Q
Sbjct: 355 KCA------DPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQ 408
Query: 289 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
T Q TI L+P T +++ N G S ++V+T PG
Sbjct: 409 VREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPT 467
Query: 349 VSVTEVNNGFVI--SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYRE 406
S+ I W+ P + +I Y I Y+ S+ + S LG
Sbjct: 468 ESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGN--- 524
Query: 407 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
T L P TTY F + G G +
Sbjct: 525 ---------------ETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQF 559
Score = 93.7 bits (232), Expect = 1e-20
Identities = 35/245 (14%), Positives = 56/245 (22%), Gaps = 27/245 (11%)
Query: 242 EGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP----- 295
E P G E + L+W + Y I Y+ + D
Sbjct: 459 EDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVI-TLYEITYKAVSSFDPEIDLSNQSG 517
Query: 296 --VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTE 353
T L P TTY F + G G + P +
Sbjct: 518 RVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPL 577
Query: 354 VNNG--FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD 411
+ +P R + + Y I + +T +I +
Sbjct: 578 NQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNS 637
Query: 412 WLPI-----PVTPPGSTQITINR-----------LTPATTYEFQVVGKNELGDGMLSNIV 455
+ + TI L P +Y + + V
Sbjct: 638 QYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCV 697
Query: 456 VVKTK 460
V TK
Sbjct: 698 QVATK 702
Score = 88.7 bits (219), Expect = 7e-19
Identities = 43/307 (14%), Positives = 79/307 (25%), Gaps = 55/307 (17%)
Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVV 226
++++ + W NR + I + V+
Sbjct: 91 PGLLNVYVKV---NNGPLGNPIWNISGDPTRTWNR-----AELAISTFWPNFYQVIFEVI 142
Query: 227 SNEVATIVQAAQLVVEGTQPHAPYNITG---VATEFSVTLEWLPGYSGGPDLKQNYVIWY 283
++ + ++ V G + V + G +
Sbjct: 143 TSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVA---GDRLW 199
Query: 284 REQGNKDWLP-----IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
+ + P + + + T +++ + + E G G+ SN +
Sbjct: 200 LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI-SNYAELVV 258
Query: 339 KGPKPGPPRNVSVTEVNNGFV-ISWQPPLERA-SLIQYYLIKYRT-DGSWKTLNKGQIRP 395
K P P P + V ++ I I ++Y T GSW
Sbjct: 259 KEP-PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWND-------- 309
Query: 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN--ELGDGMLSN 453
P ST I L P T YE V+ E G G
Sbjct: 310 ---------------------RQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGP 348
Query: 454 IVVVKTK 460
+ +TK
Sbjct: 349 ALRTRTK 355
Score = 42.8 bits (100), Expect = 2e-04
Identities = 21/144 (14%), Positives = 33/144 (22%), Gaps = 42/144 (29%)
Query: 245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI---------- 294
P T+ +VT+ P +S G + Y I E+ +
Sbjct: 568 MPAYELETPLNQTDNTVTVMLKPAHSRGAPV-SVYQIVVEEERPRRTKKTTEILKCYPVP 626
Query: 295 --------------------PVTPPGSTQITINR-----------LTPATTYEFQVVGKN 323
+ + TI L P +Y +
Sbjct: 627 IHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAAS 686
Query: 324 ELGDGMLSNIVVVKTKGPKPGPPR 347
+ V V TKG P
Sbjct: 687 RANGETKIDCVQVATKGAATPKPV 710
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 125 bits (315), Expect = 1e-32
Identities = 57/318 (17%), Positives = 102/318 (32%), Gaps = 46/318 (14%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIVG 206
R+ PA + + G+SV + C E E T+ W R A +R +G
Sbjct: 3 PRRCPAQEVARGVLTSL-PGDSVTLTCPGVEPEDN--ATVHWVLRKPAAGSHPSRWAGMG 59
Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF--SVTLE 264
+ + ++ D G Y C + A V L+V+ P ++ +V E
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGTVH---LLVDV--PPEEPQLSCFRKSPLSNVVCE 114
Query: 265 WLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINR------LTPATTYEFQ 318
W P + V+ R+ N S + ++ Y
Sbjct: 115 WGPRSTPSLTT--KAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVS 172
Query: 319 VVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNN---GFVISWQPPLERASLIQYY 375
+ + +G +P PP N++VT V ++WQ P S +Y
Sbjct: 173 MCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS--SFY 230
Query: 376 LIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATT 435
+++ ++R YR + +K + V I+
Sbjct: 231 RLRF------------ELR---------YRAERSKTFTTWMVKDL-QHHCVIHDAWSGLR 268
Query: 436 YEFQVVGKNELGDGMLSN 453
+ Q+ + E G G S
Sbjct: 269 HVVQLRAQEEFGQGEWSE 286
Score = 78.0 bits (191), Expect = 4e-16
Identities = 47/301 (15%), Positives = 89/301 (29%), Gaps = 35/301 (11%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
+ C V W K + ++ + LL V + G Y+C
Sbjct: 25 TLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM--GRRLLLRSVQLHDSGNYSC----- 77
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT--ITWQRR 192
+ +G + +LV PP + + ++ CE T + R+
Sbjct: 78 YRAGRPAGTVHLLVDVPPE----EPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRK 133
Query: 193 DGVALPKNRVKIV------GGNITIEGLRRVDFGYYE--CVVSNEVATIVQAAQLV--VE 242
+ ++ + + D +Y V++ V + Q
Sbjct: 134 FQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCG 193
Query: 243 GTQPHAPYNITGVATEFS---VTLEWLP---GYSGGPDLKQNYVIWYREQGNKDWLPIPV 296
QP P NIT A + +++ W S L+ + + YR + +K + V
Sbjct: 194 ILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLR--FELRYRAERSKTFTTWMV 251
Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKTKGPKPGPPRNVSVTE 353
I+ + Q+ + E G G S + PP V+
Sbjct: 252 KDL-QHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVST 310
Query: 354 V 354
Sbjct: 311 P 311
Score = 32.1 bits (72), Expect = 0.37
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
L++ V DSG Y C + A +L V+ P
Sbjct: 44 RKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP----AGTVHLLVDVP 94
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 129 bits (325), Expect = 3e-32
Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 34/257 (13%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
K + ++ S LY CE N +G + +V ++T P +Q
Sbjct: 510 KNKTVSTLVIQAANVSALYKCEAVNKVGRGER-VISFHVTRGPEITLQPDMQPTEQE-SV 567
Query: 75 VVQCHIKANPTFQYVTWTKD----------------KRLLEPYQTKDIVVMQNGS----- 113
+ C + +TW K + L+ + + N +
Sbjct: 568 SLWCTADRSTFEN-LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK--PPAFTIKPEAMYQRKVGESVD 171
+ + QG Y C + + ++ V + P T E +GES++
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTS-IGESIE 685
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGGNITIEGLRRVDFGYYECVVSN 228
+ C A G P I W +D L ++ +K N+TI +R+ D G Y C +
Sbjct: 686 VSCTA---SGNPPPQIMW-FKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 741
Query: 229 EVATIVQAAQLVVEGTQ 245
+ A ++EG Q
Sbjct: 742 VLGCAKVEAFFIIEGAQ 758
Score = 125 bits (315), Expect = 5e-31
Identities = 45/255 (17%), Positives = 87/255 (34%), Gaps = 27/255 (10%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
R+ I +G+ CE Q+ Y+ V ++ V P
Sbjct: 175 NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS-IMYIVVVVGYRI---YDVVLSP 230
Query: 70 FRLQGV-------VQCHIKANPTFQYVTWTKDKRLLEP-----------YQTKDIVVMQN 111
+ + C + + + + + Q+ +
Sbjct: 231 SHGIELSVGEKLVLNCTARTELNVG-IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 289
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
+L V ++ QG YTC + T+ +S + V + AF E++ + VGE V
Sbjct: 290 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVR 349
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231
+ + G P I W ++G+ L N G +TI + D G Y +++N ++
Sbjct: 350 IPA---KYLGYPPPEIKW-YKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPIS 405
Query: 232 TIVQAAQLVVEGTQP 246
Q+ + + P
Sbjct: 406 KEKQSHVVSLVVYVP 420
Score = 124 bits (313), Expect = 1e-30
Identities = 56/400 (14%), Positives = 106/400 (26%), Gaps = 73/400 (18%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG--- 74
TL I+ V D GLY C S+G+ + ++ V V F ++ L G
Sbjct: 290 STLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 348
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
+ P + + W K+ LE + + L V++ G YT N
Sbjct: 349 RIPAKYLGYPPPE-IKWYKNGIPLES----NHTIKAGHVLTIMEVSERDTGNYTVILTNP 403
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEA--MYQRKVGESVDMHCEAQEAEGTQKP-TITWQR 191
+ S + ++V PP K + + G + + C P I W
Sbjct: 404 ISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTC---TVYAIPPPHHIHWYW 460
Query: 192 RDG---------------------------------VALPKNRVKIVGGN----ITIEGL 214
+ + + KN+ ++ G T+
Sbjct: 461 QLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQ 520
Query: 215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLE---------- 264
Y+C N+V + V + SV+L
Sbjct: 521 AANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFEN 580
Query: 265 ---WLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI----TINRLTPATTYEF 317
+ G P + + W ST + + ++
Sbjct: 581 LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDY 640
Query: 318 QVVGKNELGDGMLSNIVVVKTKGPKP----GPPRNVSVTE 353
+ ++ + + G N + +
Sbjct: 641 VCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSI 680
Score = 122 bits (308), Expect = 4e-30
Identities = 68/417 (16%), Positives = 119/417 (28%), Gaps = 97/417 (23%)
Query: 8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVTFTPTVQ 66
LE+ IK L I V D+G Y ++N I + + L V P ++ +
Sbjct: 371 LESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLIS 430
Query: 67 YLPFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS---------- 113
+ G + C + A P ++ W + V + N
Sbjct: 431 PVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVED 490
Query: 114 ------------------------LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
N Y C N G + V
Sbjct: 491 FQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR--GERVISFHVT 548
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG--- 206
+ P T++P+ Q ESV + C A + + +TW + LP + ++
Sbjct: 549 RGPEITLQPDM--QPTEQESVSLWCTA---DRSTFENLTWYKLGPQPLPIHVGELPTPVC 603
Query: 207 ---------------------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
+ ++ D G Y C+ + + +
Sbjct: 604 KNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE 663
Query: 246 PHAPY------NIT---GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP- 295
AP N T G + E S T SG P + ++W+ KD +
Sbjct: 664 RVAPTITGNLENQTTSIGESIEVSCTA------SGNPPPQ---IMWF-----KDNETLVE 709
Query: 296 ----VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
V G+ +TI R+ + + LG + +++ K R
Sbjct: 710 DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766
Score = 112 bits (282), Expect = 9e-27
Identities = 70/485 (14%), Positives = 135/485 (27%), Gaps = 66/485 (13%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG--- 74
TL I V +D+G Y C Y+ + + + +
Sbjct: 86 KTLTIPKVIGNDTGAYKCFYRETDLA-SVIYVYVQDYRSPFIASVSDQHGVVYITENKNK 144
Query: 75 --VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132
V+ C + + ++ P + I ++ G C
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNR-ISWDSKKGFTIPSYMISYAGMVFCEAK 203
Query: 133 NAHGTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ- 190
+ S + V+V + + P + VGE + ++C A I +
Sbjct: 204 INDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC---TARTELNVGIDFNW 260
Query: 191 -------------RRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237
RD + +K +TI+G+ R D G Y C S+ + T +
Sbjct: 261 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 320
Query: 238 QLVVEG----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP 293
+ V ++ V + Y G P + + WY K+ +P
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAK--YLGYPPPE---IKWY-----KNGIP 370
Query: 294 IP---VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK--PGPPRN 348
+ G +TI ++ T + V+ N + S++V + P
Sbjct: 371 LESNHTIKAGHV-LTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429
Query: 349 VSVTEVNNG---------------FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI 393
V G I W LE + T+ +
Sbjct: 430 SPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVE 489
Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
+ + + + Q + T T+ + ++ N++G G
Sbjct: 490 DFQGGNKIEVNKNQ------FALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVI 543
Query: 454 IVVVK 458
V
Sbjct: 544 SFHVT 548
Score = 96.4 bits (239), Expect = 2e-21
Identities = 41/355 (11%), Positives = 86/355 (24%), Gaps = 43/355 (12%)
Query: 29 DSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQY 88
L++C + ++++ P + L + +Q +
Sbjct: 8 AVALWLCVETRAASV---GLPSVSLDLP---RLSIQKDILTIKANTTLQITCRGQRD--- 58
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144
+ W Q ++ +G +L +V N G Y C +
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Query: 145 EVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV 202
+ A + ++V + C + R +
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPC---LGSISNLNVSLCARYPEKRFVPDGN 175
Query: 203 KIV---GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG----- 254
+I TI G C + +VV ++
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235
Query: 255 ------------VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
TE +V +++ Y + V + + +
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS-----EMKKFLS 290
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
+TI+ +T + + + L S V V K S+ E G
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVG 345
Score = 45.1 bits (106), Expect = 4e-05
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
V+ + L I V +D GLY C+ + +G +A+ +E + T +
Sbjct: 713 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQEKTNLERTHHH 769
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 123 bits (308), Expect = 6e-32
Identities = 57/316 (18%), Positives = 103/316 (32%), Gaps = 44/316 (13%)
Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQE----AEGTQKPTITWQRRDGVALPKNRVKIVGG 207
P I PE+ + + + C +E I W + + +PK + I+
Sbjct: 5 PCGYISPESPVVQ-LHSNFTAVCVLKEKCMDYFHVNANYIVW-KTNHFTIPKEQYTIINR 62
Query: 208 N---ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF-SVTL 263
+T + ++ +++ ++ G P P N++ + E +
Sbjct: 63 TASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRC 122
Query: 264 EWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINR-LTPATTYEFQVVGK 322
EW G + N+ + +K + T T++ E V +
Sbjct: 123 EWDGGRETHLET--NFTLKSEWATHK-FADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE 179
Query: 323 NELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGF---VISWQPPLERASLIQYYLIKY 379
N LG +I KP PP N+SV ++W P ++ +I Y I+Y
Sbjct: 180 NALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY 239
Query: 380 RTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 437
RT + W + T + T+ L P T Y
Sbjct: 240 RTKDASTWSQIP-------------------------PEDTASTRSSFTVQDLKPFTEYV 274
Query: 438 FQVVGKNELGDGMLSN 453
F++ E G G S+
Sbjct: 275 FRIRCMKEDGKGYWSD 290
Score = 46.7 bits (110), Expect = 7e-06
Identities = 23/202 (11%), Positives = 47/202 (23%), Gaps = 33/202 (16%)
Query: 259 FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT-YEF 317
F+ + NY++W + ++ +T +
Sbjct: 22 FTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTC 81
Query: 318 QVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYL 376
++ +L + ++ G P P+N+S W E L +
Sbjct: 82 NILTFGQLEQNVYGITIIS---GLPPEKPKNLSCIVNEGKKMRCEWDGGRE-THLETNFT 137
Query: 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINR-LTPATT 435
+K + T T++
Sbjct: 138 LKSEWATH--------------------------KFADCKAKRDTPTSCTVDYSTVYFVN 171
Query: 436 YEFQVVGKNELGDGMLSNIVVV 457
E V +N LG +I
Sbjct: 172 IEVWVEAENALGKVTSDHINFD 193
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 119 bits (301), Expect = 1e-31
Identities = 51/205 (24%), Positives = 74/205 (36%), Gaps = 20/205 (9%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGG 207
P P A+Y G V++ CE TI+W RDG LP + +KI
Sbjct: 19 APKLQ-GPVAVY-TWEGNQVNITCEVF---AYPSATISW-FRDGQLLPSSNYSNIKIYNT 72
Query: 208 N----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
+ + DFG Y C N + LV T P +P + +
Sbjct: 73 PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT-PSSPSIDQVEPYSSTAQV 131
Query: 264 EWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP---PGSTQITINRLTPATTYEFQV 319
++ P +GG + Y +R G + W +TI L P TTY ++
Sbjct: 132 QFDEPEATGGVPI-LKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL 190
Query: 320 VGKNELGDGMLSNIVVVKTKGPKPG 344
N G G +S KT+ P G
Sbjct: 191 AALNGKGLGEISAASEFKTQ-PVQG 214
Score = 71.4 bits (175), Expect = 1e-14
Identities = 42/247 (17%), Positives = 67/247 (27%), Gaps = 43/247 (17%)
Query: 220 GYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNY 279
Y S V ++G P + V + P
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQG-----PVAVYTWEGN-QVNITCE--VFAYPSAT--- 49
Query: 280 VIWYR-----EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 334
+ W+R N + I TP S + + + + N +G L I+
Sbjct: 50 ISWFRDGQLLPSSNYSNIKIYNTPSASY-LEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Query: 335 VVKTKGPKPGPPRNVSVTEVNNGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQI 393
V P P V ++ + + P I Y ++R G
Sbjct: 109 VQADT---PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE--------- 156
Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
E + W +TI L P TTY ++ N G G +S
Sbjct: 157 ------------EVWHSKWYDAKEAS-MEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 203
Query: 454 IVVVKTK 460
KT+
Sbjct: 204 ASEFKTQ 210
Score = 48.3 bits (115), Expect = 1e-06
Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 31 GLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVT 90
Y S + + K+ P Y Q + C + A P+ ++
Sbjct: 1 ATYAAASSALVPRGS-------HMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSAT-IS 51
Query: 91 WTKDKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147
W +D +LL +I + S L T ++N G Y CT N G S + ++
Sbjct: 52 WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ--ESLEFILV 109
Query: 148 VRKPPA 153
P+
Sbjct: 110 QADTPS 115
Score = 37.1 bits (86), Expect = 0.006
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
+ + I L + P +D G Y C N IG+ L
Sbjct: 64 YSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE-FILVQADT 113
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 119 bits (300), Expect = 1e-31
Identities = 40/235 (17%), Positives = 71/235 (30%), Gaps = 43/235 (18%)
Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI--------- 294
T P P N+T + ++ SV L W+ + G + V + K+W
Sbjct: 2 TYPPTPPNVTRL-SDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 295 --PVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPK--PGPPR 347
S ++ L P TY F+++ D S ++ P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 348 NVSVTEVNNGFV-ISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
+ + E + V + W + LI Y YR S
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSS--------------------- 159
Query: 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
++ + + I L AT YEF++ + S + +T+
Sbjct: 160 ---AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211
Score = 72.5 bits (178), Expect = 6e-15
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 246 PHAPYNITGVA-TEFSVTLEW-LPGYSGGPDLKQNYVIWYREQG-NKDWLPIPVTPPGST 302
P + +E +V L W L + + Y +YR ++ + +
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEHLI-TGYYAYYRPSSSAGEYFKATIEGAHAR 174
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK 342
I L AT YEF++ + S + +T+ PK
Sbjct: 175 SFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 119 bits (299), Expect = 2e-31
Identities = 47/224 (20%), Positives = 76/224 (33%), Gaps = 34/224 (15%)
Query: 246 PHAPYNITGVA-TEFSVTLEW----LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
P + + ++ + W LP + D + Y + ++ +
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRY-YTVRWKTNIPANTKYK-NANAT 62
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVTEVNNG-- 357
+ + L P T YEF V+ S T P PP++V+V
Sbjct: 63 TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPK 122
Query: 358 -FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
+++WQPP E I Y+I Y TD + + DW+ P
Sbjct: 123 TIIVNWQPPSEANGKITGYIIYYSTDVNAEI----------------------HDWVIEP 160
Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
V I LT T Y F++ +N G G +S V +T
Sbjct: 161 V-VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP 203
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 120 bits (303), Expect = 3e-31
Identities = 39/244 (15%), Positives = 67/244 (27%), Gaps = 19/244 (7%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV-TFTPTVQYL 68
T L N ++G Y C A +L V+ PA+ +
Sbjct: 43 TLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGS-AAIHLYVKDPARPWNVLAQEVVV 101
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
++ C + V+ + + T R Y
Sbjct: 102 FEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTN-YSFSPWHGFTIHRAKFIQSQDYQ 160
Query: 129 CTPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
C+ S + + V+K PPA T+ P R GE+ + C A
Sbjct: 161 CSALMGGRKVMSI-SIRLKVQKVIPGPPALTLVPAE-LVRIRGEAAQIVCSAS---SVDV 215
Query: 185 PTITWQRRDGVALPKNRVKIVGGN-------ITIEGLRRVDFGYYECVVSNEVATIVQAA 237
+ + + L + N + ++ + G Y CV SN +
Sbjct: 216 NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSM 275
Query: 238 QLVV 241
V
Sbjct: 276 FFRV 279
Score = 87.7 bits (217), Expect = 2e-19
Identities = 27/232 (11%), Positives = 57/232 (24%), Gaps = 25/232 (10%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
V W + + L + G Y CT ++ + V
Sbjct: 32 VEWDGPPSPHWTLYSDG----SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAI--HLYV 85
Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--G 206
+ P + + C + + ++ R G L ++
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTD--PVLEAGVSLVRVRGRPLMRHTNYSFSPW 143
Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWL 266
TI + + Y+C ++ + + P +T V E
Sbjct: 144 HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIR--- 200
Query: 267 PGY--------SGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLT 310
G S N+ ++ + K +P + + L
Sbjct: 201 -GEAAQIVCSASSVD---VNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLN 248
Score = 84.6 bits (209), Expect = 2e-18
Identities = 25/158 (15%), Positives = 42/158 (26%), Gaps = 9/158 (5%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE----FPAKVTFTPT 64
T I+ S Y C G + + L V+ P +T P
Sbjct: 135 HTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA 194
Query: 65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL---EPYQTKDIVVMQNGSLLFTRVNQ 121
+ C + V + L + + + +L +V+
Sbjct: 195 ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDF 254
Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
H G Y+C N G S M V + +
Sbjct: 255 QHAGNYSCVASNVQGK--HSTSMFFRVVESAGNSHHHH 290
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 124 bits (313), Expect = 4e-31
Identities = 57/317 (17%), Positives = 88/317 (27%), Gaps = 50/317 (15%)
Query: 165 KVGESVDMHCEAQ----------EAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGL 214
GE MHC + + + K E
Sbjct: 243 PGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHT 302
Query: 215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWL-PGYSGGP 273
G C Q + P AP+ +T V V L W P SGG
Sbjct: 303 LPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGR 362
Query: 274 DLKQNYVIWYREQGNKDWLPIP----------VTPPGSTQITINRLTPATTYEFQVVGKN 323
+ Y + + + P T +T++ L P Y F V +N
Sbjct: 363 ED-IVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARN 421
Query: 324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTD 382
+ + S + P V + + + +SW P + S + Y + YR
Sbjct: 422 GVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKK 481
Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
G + N V +T++ L P TTY QV
Sbjct: 482 GDSNSYN---------------------------VRRTEGFSVTLDDLAPDTTYLVQVQA 514
Query: 443 KNELGDGMLSNIVVVKT 459
+ G G S + +T
Sbjct: 515 LTQEGQGAGSKVHEFQT 531
Score = 65.6 bits (159), Expect = 1e-11
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Query: 208 NITIEGLRRVDFGYYECVVS--NEVATIVQAAQLVV--EGTQPHAPYNITGVA-TEFSVT 262
++T+ L Y V N V+ +V + P + + S++
Sbjct: 401 SVTVSDLEP--HMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLS 458
Query: 263 LEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 321
+ W P K Y + YR++G+ + + T +T++ L P TTY QV
Sbjct: 459 VSWSIPPPQQSRVWK--YEVTYRKKGDSNSYNVRRTE--GFSVTLDDLAPDTTYLVQVQA 514
Query: 322 KNELGDGMLSNIVVVKTKGPK 342
+ G G S + +T P+
Sbjct: 515 LTQEGQGAGSKVHEFQTLSPE 535
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 118 bits (297), Expect = 6e-31
Identities = 43/220 (19%), Positives = 69/220 (31%), Gaps = 27/220 (12%)
Query: 242 EGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
AP N A + WLP SG P Y + Y QG+ + +
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP-SGKP---MGYRVKYWIQGDSESEAHLLDSK- 56
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFV 359
+ + L P YE +V G+G S++V +T P P ++ V+
Sbjct: 57 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116
Query: 360 ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
+SW P E I Y + Y + + V
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVND--------------------DNRPIGPMKKVLVDN 156
Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
P + + I L + Y + V +N G G ++
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLA 196
Score = 60.2 bits (146), Expect = 1e-10
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 30/119 (25%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
G P+N + + + +W PP + Y +KY G
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGD----------------- 45
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
+ + + L P YE +V G+G S++V +T
Sbjct: 46 ---------SESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTH 95
Score = 59.4 bits (144), Expect = 3e-10
Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 17/138 (12%)
Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKD-----WLPIPVTP 298
P P + + L W P + G Y + Y + + + V
Sbjct: 99 PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITA--YEVCYGLVNDDNRPIGPMKKVLVDN 156
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT--KGPKPGPPRNVSVTEVN- 355
P + + I L + Y + V +N G G ++ P + V+
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDA 216
Query: 356 -----NGFVISWQPPLER 368
+ + + R
Sbjct: 217 QSGEDYDSFLMYSDDVLR 234
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 119 bits (300), Expect = 1e-30
Identities = 37/273 (13%), Positives = 85/273 (31%), Gaps = 46/273 (16%)
Query: 7 SLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
S++ + K TL+I D+G+Y + + G+ ++ L E ++
Sbjct: 49 SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCK 107
Query: 66 QYLPFRLQGVVQCHIKANPTFQY---------VTWTKDKRLLEPYQTKDIVVMQNG---S 113
+ +Q + + + V W+ + + + + G
Sbjct: 108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--SDRVKTGVTGEQIW 165
Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-------------------RKPPAF 154
L N +G+Y ++ + + +
Sbjct: 166 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225
Query: 155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV-----GGN 208
P+ + + G+++++ C G P ++W ++ AL + +
Sbjct: 226 GGLPDVV-TIQEGKALNLTC---NVWGDPPPEVSW-LKNEKALASDDHCNLKFEAGRTAY 280
Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
TI G+ D G Y VV N+ + + V
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 81.5 bits (201), Expect = 3e-17
Identities = 31/212 (14%), Positives = 62/212 (29%), Gaps = 22/212 (10%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
+C + ++ W KD+R + + ++G +LL T ++ G Y +
Sbjct: 27 KCKVANIKKETHIVWYKDEREISV---DEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 83
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ-------EAEGTQKPTI 187
G S + ++ ++ + + A+ + +
Sbjct: 84 RGKDKSRLK--LVDEAFKELMMEVCKK-IALSATDLKIQSTAEGIQLYSFVTYYVEDLKV 140
Query: 188 TWQRRDGVAL-PKNRVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
W +G A+ +RVK G I I D G Y + + + L +
Sbjct: 141 NWS-HNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 199
Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPD 274
A + G PD
Sbjct: 200 AYDE-AYAEFQRLKQAAIAEKNRARVLGGLPD 230
Score = 71.5 bits (175), Expect = 6e-14
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 28/164 (17%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
RV G L IN +D G Y+ E+ +G Q L+ + +
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEAYAEFQRLK 212
Query: 68 LPFRLQGVV---------------------QCHIKANPTFQYVTWTKDKRLLEPYQTKDI 106
+ C++ +P + V+W K+++ L ++
Sbjct: 213 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALASDDHCNL 271
Query: 107 VV--MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
+ V+ G+Y N +G++ S + V +
Sbjct: 272 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 60.7 bits (147), Expect = 2e-10
Identities = 27/225 (12%), Positives = 58/225 (25%), Gaps = 30/225 (13%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVAL-PKNRVKIV 205
P F ++ +V + C+ +K I W +D + +
Sbjct: 4 PFTGPHFVEYLS--WEVTGECNVLLKCKV---ANIKKETHIVW-YKDEREISVDEKHDFK 57
Query: 206 GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
G T I + D G YE ++ ++ +LV E + + L
Sbjct: 58 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-AFKELMMEVCKKIALSATDL 116
Query: 264 EWLPGYSGGPDLKQNY-------VIWYREQGNKDWLPIPVTP-------PGSTQITINRL 309
+ G V W + I + + IN
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWS-----HNGSAIRYSDRVKTGVTGEQIWLQINEP 171
Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV 354
TP ++ + + + + + + + +
Sbjct: 172 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 216
Score = 43.7 bits (103), Expect = 7e-05
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 11 RVVIKKD----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
+K + IN V + DSG Y V N G + + ++V P
Sbjct: 268 HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFIP 316
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 116 bits (293), Expect = 7e-30
Identities = 41/249 (16%), Positives = 74/249 (29%), Gaps = 21/249 (8%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
T TL ++G Y C +L V+ PA +
Sbjct: 39 SPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGST-TIHLYVKDPAHS-WNLLA 96
Query: 66 QYLPFRL--QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
Q + + V+ C I V+ ++ +T + +
Sbjct: 97 QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTV-YFFSPWRGFIIRKAKVLD 155
Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEA 179
Y C G + +S + + V + PP ++P + R GE+ + C A
Sbjct: 156 SNTYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLEPSKL-VRIRGEAAQIVCSAT-- 211
Query: 180 EGTQKPTITWQRRDGVALP-------KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
+ +R L ++ +++ + D G Y CV SN+V T
Sbjct: 212 -NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
Query: 233 IVQAAQLVV 241
V
Sbjct: 271 RTATMNFQV 279
Score = 96.2 bits (239), Expect = 2e-22
Identities = 22/188 (11%), Positives = 44/188 (23%), Gaps = 15/188 (7%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C + V W + +L + G Y CT
Sbjct: 25 RCVSNGS-----VEWDGPISPYWTLDPES----PGSTLTTRNATFKNTGTYRCTELEDPM 75
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
++ + V+ P G+ + C + K +++ R G
Sbjct: 76 AGSTTIH--LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI--TDPALKDSVSLMREGGRQ 131
Query: 197 LPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG 254
+ + V I + +D Y C + P I
Sbjct: 132 VLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKL 191
Query: 255 VATEFSVT 262
++
Sbjct: 192 EPSKLVRI 199
Score = 85.4 bits (211), Expect = 1e-18
Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 11/150 (7%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
+T +I DS Y+C+ E + +L V P ++
Sbjct: 135 KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN--RVHPEPPQIKLE 192
Query: 69 PFRL---QG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDI---VVMQNGSLLFTRV 119
P +L +G + C V + LE D + +L V
Sbjct: 193 PSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAV 252
Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
+ G Y+C N GT+ ++ +V+
Sbjct: 253 DFQDAGIYSCVASNDVGTRTATMNFQVVES 282
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 114 bits (286), Expect = 8e-30
Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 9/171 (5%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
V C + ++P V+W + ++ N +L +N++ +G Y C
Sbjct: 21 EVVCRVSSSPAPA-VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE 79
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRD 193
+ + V+V PPA ++ ++ + GE + C A G+ +P I+W R+
Sbjct: 80 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC---RASGSPEPAISW-FRN 135
Query: 194 GVALPKN-RVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
G + +N + + +T+ + D G Y C +N+ + A L V
Sbjct: 136 GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 89.5 bits (222), Expect = 5e-21
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 5/144 (3%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSN-GIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
+ R + + L I + D G+Y CE GE + V P ++
Sbjct: 48 DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFN 107
Query: 68 LPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG 125
+ C +P ++W ++ +L+E K I+ N L + + G
Sbjct: 108 ATAERGEEMTFSCRASGSPEPA-ISWFRNGKLIEE-NEKYILKGSNTELTVRNIINSDGG 165
Query: 126 RYTCTPYNAHGTQGSSGQMEVLVR 149
Y C N G ++V V+
Sbjct: 166 PYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 64.0 bits (156), Expect = 4e-12
Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 31/191 (16%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL---PKNRVKIV-G 206
F + K GE ++ C + P ++W + NR ++
Sbjct: 2 MLTFREVVSPQ-EFKQGEDAEVVCRV---SSSPAPAVSWLY-HNEEVTTISDNRFAMLAN 56
Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG------TQPHAPYNITGVATEFS 260
N+ I + + D G Y C E + ++V + P +N T E
Sbjct: 57 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-E 115
Query: 261 VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP-----PGSTQITINRLTPATTY 315
+T SG P+ + W+ ++ I +T++T+ + +
Sbjct: 116 MTFSCRA--SGSPEPA---ISWF-----RNGKLIEENEKYILKGSNTELTVRNIINSDGG 165
Query: 316 EFQVVGKNELG 326
+ N+ G
Sbjct: 166 PYVCRATNKAG 176
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 115 bits (288), Expect = 5e-29
Identities = 40/271 (14%), Positives = 92/271 (33%), Gaps = 44/271 (16%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLN-VEFPAKVTFTPTVQ 66
R+ ++ G + +G DD G+Y C+V++ G + ++ ++
Sbjct: 48 RLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFP 107
Query: 67 YLPFRLQGVVQCHIKANPTFQY----------VTWTKDKRLLEPYQTKDIVVMQNG---S 113
+P + + V+ K F V + +++ + + + +N
Sbjct: 108 TVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 167
Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-----------------RKPPAFTI 156
+ ++ +G YT + T S+ + V ++ P F
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 227
Query: 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKN-RVKIVGGN--ITIE 212
++ +V + C+ +K T I W + D + + + G + I
Sbjct: 228 YLS--WEVTGECNVLLKCKV---ANIKKETHIVWYK-DEREISVDEKHDFKDGICTLLIT 281
Query: 213 GLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
+ D G YE ++ ++ +LV E
Sbjct: 282 EFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 77.0 bits (189), Expect = 8e-16
Identities = 50/302 (16%), Positives = 95/302 (31%), Gaps = 55/302 (18%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
+C P + +W+KD E + + V G + F + + G Y+C +
Sbjct: 24 ECDK-MTPKSE-FSWSKDYVSTED--SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTD 79
Query: 134 AHGTQGSSGQMEVLVR---------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
G S E ++ K P +K E + V +A + +
Sbjct: 80 TDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA--EKLSGN 137
Query: 185 PTITWQRRDGVAL---PKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAA 237
+ + + + PK ++ I + +E L+ D G Y + + AT
Sbjct: 138 AKVNY-IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 196
Query: 238 QLVVE-------GTQPHAPYNITGVATEFSVTLEW--LPGY--------SGGPDLKQNYV 280
LV + + I F L W + K+ ++
Sbjct: 197 VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK--KETHI 254
Query: 281 IWYREQGNKDWLPIPVTP-----PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335
+WY KD I V G + I + ++V+ K++ G +V
Sbjct: 255 VWY-----KDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
Query: 336 VK 337
+
Sbjct: 310 DE 311
Score = 55.4 bits (133), Expect = 1e-08
Identities = 28/217 (12%), Positives = 59/217 (27%), Gaps = 30/217 (13%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGG 207
P FT + S++ C+ + T K +W +D V+ + V+ G
Sbjct: 3 DP-FTKEVVVNVDDDGVISLNFECD----KMTPKSEFSW-SKDYVSTEDSPRLEVESKGN 56
Query: 208 N--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLE- 264
+T + L D G Y C V++ E + A + T +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 265 -----------WLPGYSGGPDLKQNYVIWYRE----QGNKDWLPIPVTPPGSTQITINRL 309
W+ + K V + + G ++ + +L
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAK---VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 173
Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ ++ + ++V
Sbjct: 174 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 210
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 115 bits (289), Expect = 5e-29
Identities = 49/275 (17%), Positives = 84/275 (30%), Gaps = 51/275 (18%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK--------VTFTPT 64
V+ L + +DSG Y C + + T
Sbjct: 56 VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115
Query: 65 VQYLPFRLQGVV----------------QCHIKANPTFQYVTWTKDKRLLEPYQTKDI-- 106
P+ + +C NPT ++W K+ R
Sbjct: 116 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRIGGIK 174
Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR---KPPAFTIKPEAMYQ 163
+ Q SL+ V + +G YTC N G+ + ++VL R +P P
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ-T 233
Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRR---DGVALPKNRVKIV--------------G 206
+G V+ HC + +P I W + +G + + V
Sbjct: 234 AVLGSDVEFHC---KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKEL 290
Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
+++ + D G Y C+ N + +A LVV
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 93.9 bits (233), Expect = 2e-21
Identities = 49/298 (16%), Positives = 82/298 (27%), Gaps = 59/298 (19%)
Query: 77 QCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
C P W KD L P + V++ L + G Y+C
Sbjct: 29 SCPPPGGGPMGP-TVWVKDGTGLVP---SERVLVGPQRLQVLNASHEDSGAYSCRQRLTQ 84
Query: 136 GTQGS-------------------SGQMEVLVRKPPAFTIKPEAMYQR----KVGESVDM 172
+ + P +T +PE M ++ +V
Sbjct: 85 RVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT-RPERMDKKLLAVPAANTVRF 143
Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKN------RVKIVGGNITIEGLRRVDFGYYECVV 226
C A G P+I+W ++G +++ ++ +E + D G Y CVV
Sbjct: 144 RC---PAAGNPTPSISWL-KNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199
Query: 227 SNEVATIVQAAQLVVEGTQPHAPYNITG------VATEFSVTLE------------WLPG 268
N+ +I Q L V PH P G V WL
Sbjct: 200 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKH 259
Query: 269 YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
Y ++++ +T E+ + N +G
Sbjct: 260 VEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV--LSLHNVTFEDAGEYTCLAGNSIG 315
Score = 75.8 bits (186), Expect = 3e-15
Identities = 31/168 (18%), Positives = 49/168 (29%), Gaps = 27/168 (16%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
+ + +LV+ V D G Y C V N G + L+V + P +Q
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR-QTYTLDVL--ERSPHRPILQAGLP 229
Query: 71 RLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKD--------------IVVM 109
Q V C + ++ + W K + D
Sbjct: 230 ANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288
Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK 157
+ L V G YTC N+ G S + VL ++
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP--AEEELVE 334
Score = 61.9 bits (150), Expect = 9e-11
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 4/113 (3%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGN 208
+ P + G++V++ C G W +DG L + RV +
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPG--GGPMGPTVW-VKDGTGLVPSERVLVGPQR 62
Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSV 261
+ + D G Y C + + V + + A + V
Sbjct: 63 LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115
Score = 41.5 bits (97), Expect = 4e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
K+ L ++ V +D+G Y C N IG A+L V
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH-HSAWLVV 325
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 114 bits (287), Expect = 5e-29
Identities = 36/231 (15%), Positives = 66/231 (28%), Gaps = 12/231 (5%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
+ +L + + +D G Y C ++ +L V + T L +
Sbjct: 78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMA 137
Query: 77 QCH-IKANPTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTP 131
+C P Q +TW D + V + +Q TC
Sbjct: 138 RCVSTGGRPPAQ-ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKV 196
Query: 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQ 190
+ + + + V PP +I + C+A+ +PT W
Sbjct: 197 EHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR---SNPEPTGYNW- 252
Query: 191 RRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
LP G + I + + C V+N + + V
Sbjct: 253 STTMGPLP-PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 69.7 bits (170), Expect = 2e-13
Identities = 46/295 (15%), Positives = 77/295 (26%), Gaps = 48/295 (16%)
Query: 77 QCHIKANPT----FQYVTWTKD-------------------KRLLEPYQTKDIVVMQNGS 113
C+++ +TW + + LE + ++N S
Sbjct: 21 PCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNAS 80
Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMH 173
L + +G YTC + S + + V P T + + +
Sbjct: 81 LRMFGLRVEDEGNYTCL-FVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTG-EPVPMAR 138
Query: 174 CEAQEAEGTQKPTITWQRRDGVALPK--------NRVKIVGGNITIEGLRRVDFGYYECV 225
C + G ITW D +P + V + +VD C
Sbjct: 139 CVS--TGGRPPAQITW-HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCK 195
Query: 226 VSNEV--ATIVQAAQLVVEGTQPHA--PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVI 281
V +E + L V + Y+ + TL P +
Sbjct: 196 VEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLT--CDARSNP--EPTGYN 251
Query: 282 WYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
W G LP G+ + I + N LG V V
Sbjct: 252 WSTTMGP---LPPFAVAQGAQ-LLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 48.6 bits (115), Expect = 2e-06
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 3 TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ + + L+I PV + +C V+N +G Q A+ + V
Sbjct: 253 STTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQ-AELTVQV 302
Score = 36.6 bits (84), Expect = 0.011
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 25/101 (24%)
Query: 166 VGESVDMHCEAQ--EAEGTQKPTITWQRRDG-------------VALPKNRVKIVG---- 206
+G+SV + C Q E T +TW R R++ V
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 207 -----GNITIEGLRRVDFGYYECVVSNEVA-TIVQAAQLVV 241
++ + GLR D G Y C+ + L V
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 110 bits (277), Expect = 1e-28
Identities = 38/194 (19%), Positives = 68/194 (35%), Gaps = 12/194 (6%)
Query: 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQ---N 111
+V P+ + C + + + ++W + L P Q + VV +
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
+L N + G Y C GTQ S + V + + F P K GE
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQ-SEATVNVKIFQKLMFKNAPTPQE-FKEGEDAV 119
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---GGNITIEGLRRVDFGYYECVVSN 228
+ C+ + PTI W+ + + K V+ + + I G+++ D G Y C
Sbjct: 120 IVCDVV---SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRI 176
Query: 229 EVATIVQAAQLVVE 242
+ + V
Sbjct: 177 LARGEINFKDIQVI 190
Score = 93.0 bits (231), Expect = 3e-22
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 1/132 (0%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
TL I DD+G+Y C V+ G A + + PT Q V+
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C + ++ + W R + + +V+ N L + + +G Y C
Sbjct: 121 VCDVVSSLPPT-IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 137 TQGSSGQMEVLV 148
+ + ++V+V
Sbjct: 180 GEINFKDIQVIV 191
Score = 41.3 bits (97), Expect = 2e-04
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
R ++ + L I + D G Y CE + + V
Sbjct: 148 RFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG-EINFKDIQVI 190
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 110 bits (278), Expect = 1e-28
Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 10/193 (5%)
Query: 54 EFPAKVTFTPTVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN 111
+ P T ++ + ++ V C +++ P + ++WT++K L++ + T+ +
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPE-ISWTRNKILIKLFDTRYSIRENG 61
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
L V + G Y CT N G S + V+ P T P + G
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVES-CGALQVKMKPKITRPPINVK-IIEGLKAV 119
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEV 230
+ C G KP+++W + D +R+ ++ G++ I +++ D G Y CV N +
Sbjct: 120 LPC---TTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSL 176
Query: 231 ATIV-QAAQLVVE 242
T + +L VE
Sbjct: 177 GTAYSKLVKLEVE 189
Score = 88.6 bits (220), Expect = 1e-20
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Query: 5 VGSLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
+ +TR I+++G L I V D G+Y C +NG+G + L V+ K+T P
Sbjct: 48 IKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP 107
Query: 64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
+ L+ V+ C NP V+W K L I V+++GSL V +
Sbjct: 108 INVKIIEGLKAVLPCTTMGNPKPS-VSWIKGDSALRE--NSRIAVLESGSLRIHNVQKED 164
Query: 124 QGRYTCTPYNAHGTQGSSG-QMEVLV 148
G+Y C N+ GT S ++EV V
Sbjct: 165 AGQYRCVAKNSLGTAYSKLVKLEVEV 190
Score = 56.7 bits (137), Expect = 1e-09
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA 57
R+ + + G+L I+ V +D+G Y C N +G + L VE A
Sbjct: 146 RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 112 bits (281), Expect = 7e-28
Identities = 39/278 (14%), Positives = 91/278 (32%), Gaps = 43/278 (15%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
+ K+ L P +D+G Y C + N ++ +E K + + LP
Sbjct: 74 ISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC---SKVAFPLEVVQKDSCFNSPMKLPVHK 130
Query: 73 QGVVQ-----------CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ 121
+ + ++ +TW ++ + V+ + +L F
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPT-ITWYMGCYKIQN---FNNVIPEGMNLSFLIALI 186
Query: 122 NHQGRYTCT-PYNAHGTQGS-SGQMEVLVRKPPAFTIKP-------EAMYQRKVGESVDM 172
++ G YTC Y +G + + V V P + P +Y+++ GE + +
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246
Query: 173 HCEAQEAEGTQ-KPTITWQR--------------RDGVALPKNRVKIVGGNITIEGLRRV 217
C + + + W + ++ + + ++I+ +
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE 306
Query: 218 DFGY-YECVVSNEVATIVQAAQLVVEGTQPHAPYNITG 254
D Y C + + +AA++ + P +
Sbjct: 307 DLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTVELAC 344
Score = 89.2 bits (220), Expect = 1e-19
Identities = 55/291 (18%), Positives = 93/291 (31%), Gaps = 40/291 (13%)
Query: 89 VTWTKDKR---LLEPYQTKDI---VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG 142
+ W ++ L EP + + + L F N G YTC N +
Sbjct: 50 LIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAF 109
Query: 143 QMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQE--AEGTQKPTITWQRRDGVALP 198
+EV+ +K F + + + C + + KPTITW
Sbjct: 110 PLEVV-QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN 168
Query: 199 KNRVKIVGGNITIEGLRRVDFGYYECVVS----NEVATIVQAAQLVVEGTQPHAPYNITG 254
N V G N++ + G Y CVV+ + + + V G+ +A +
Sbjct: 169 FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH 228
Query: 255 VATEFSVTLEWLPGYS---------GGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ-- 303
+ V E PG +N V W + D + I VT S
Sbjct: 229 SPND-HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHS 287
Query: 304 ----------ITINRLTPA-TTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
++I ++T + ++ G ++ VK K P P
Sbjct: 288 RTEDETRTQILSIKKVTSEDLKRSYVCHARSAK--GEVAKAAKVKQKVPAP 336
Score = 62.2 bits (150), Expect = 8e-11
Identities = 28/176 (15%), Positives = 47/176 (26%), Gaps = 31/176 (17%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVS---NGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
VI + L ++G Y C V+ NG + V K P +
Sbjct: 170 NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHS 229
Query: 68 ------------LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV------- 108
+ V + + V WT D + + +
Sbjct: 230 PNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE-VWWTIDGKKPDDITIDVTINESISHSR 288
Query: 109 ----MQNGSLLFTRVNQNHQGR-YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
+ L +V R Y C +A G + + + +K PA E
Sbjct: 289 TEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAK---VKQKVPAPRYTVE 341
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 114 bits (287), Expect = 7e-28
Identities = 61/351 (17%), Positives = 100/351 (28%), Gaps = 46/351 (13%)
Query: 122 NHQGRYTCTPYNAHGTQGS-----SGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
H C N H + S ++ + P+ VG + C +
Sbjct: 164 IHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVIL-VGSDITFCCVS 222
Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236
QE + + + G N+ I+ V +
Sbjct: 223 QE---KVLSALIGHT------NCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFG 273
Query: 237 AQLVVEGTQPHAPYNITGVATEF-SVTLEWLPGYSGGPD--LKQNYVIWYREQGNKDWLP 293
+ P P + + + W PG +Y + G L
Sbjct: 274 TVIFAG-YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLK 332
Query: 294 IPVTPPG-STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVT 352
P S Q+ L Y F + N LG S I+V T+ P P + V
Sbjct: 333 RAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-STILVNITEKVYPHTPTSFKVK 391
Query: 353 EVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD 411
++N+ V +SW P A + I+ + S + I+ ENS
Sbjct: 392 DINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENS------------ 439
Query: 412 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVVKTK 460
S + +++L P T Y F++ E SN T
Sbjct: 440 ----------SYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLTT 480
Score = 50.6 bits (120), Expect = 6e-07
Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 11/108 (10%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
W G I R + T I I L+ YE +
Sbjct: 11 VWQCSWKAPSGTGRGTDYEVCIEQRSR--------SCYQLEKTSIKIPALSH-GDYEITI 61
Query: 320 VGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN--NGFVISWQPP 365
++ G + + P P + ++ + + W
Sbjct: 62 NSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDR 109
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 107 bits (269), Expect = 2e-27
Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 26/192 (13%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQT---------KDIVVMQNGSLLFTRVNQNHQG 125
+ C + + V W D+ +D V + F V + G
Sbjct: 23 KLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 81
Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
YTC G +++++V PP+ +G + C E +G+
Sbjct: 82 TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT-IGNRAVLTC--SEQDGSPPS 138
Query: 186 TITWQRRDGVALPKNR------------VKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233
TW +DG+ +P N + G + + L D G Y C N T
Sbjct: 139 EYTW-FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197
Query: 234 VQAAQLVVEGTQ 245
+ + + +E +
Sbjct: 198 MTSNAVRMEAVE 209
Score = 83.9 bits (207), Expect = 6e-19
Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 12/158 (7%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVT 60
N S E RV + V +D+G Y C VS G + L V P
Sbjct: 53 NKITASYEDRVTFL-PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKP 111
Query: 61 FTPTVQYLPFRLQGVVQC-HIKANPTFQYVTWTKDKRLLEP--------YQTKDIVVMQN 111
+ V+ C +P +Y TW KD ++ + ++
Sbjct: 112 TVNIPSSATIGNRAVLTCSEQDGSPPSEY-TWFKDGIVMPTNPKSTRAFSNSSYVLNPTT 170
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
G L+F ++ + G Y+C N +GT +S + +
Sbjct: 171 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208
Score = 65.0 bits (158), Expect = 2e-12
Identities = 38/213 (17%), Positives = 69/213 (32%), Gaps = 34/213 (15%)
Query: 151 PPAFTIK-PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP----------- 198
+ T+ E + V + C G P + W+ G
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSC---AYSGFSSPRVEWKFDQGDTTRLVCYNNKITAS 58
Query: 199 -KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA--QLVVEG--TQPHAPYNIT 253
++RV + IT + + R D G Y C+VS E +L+V ++P +
Sbjct: 59 YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSS 118
Query: 254 GVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE---------QGNKDWLPIPVTPPGSTQI 304
L G P + W+++ V P + ++
Sbjct: 119 -ATIGNRAVLTCSE-QDGSPPSE---YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL 173
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 337
+ L+ + T E+ +N G M SN V ++
Sbjct: 174 VFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 107 bits (268), Expect = 3e-27
Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 16/180 (8%)
Query: 75 VVQCHI-KANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPY 132
V+ C P W ++ + K V Q NG+L V + +G Y+C
Sbjct: 27 VLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVS 86
Query: 133 NAHGTQGSSGQMEVLVRK--------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
+ T+ + L+ P ++ + +Y +G++V + C A G
Sbjct: 87 SPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY-ALMGQNVTLECFA---LGNPV 142
Query: 185 PTITWQRRDGVALPKN-RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
P I W R+ +P + G + I ++ D G YEC N A++ V+
Sbjct: 143 PDIRW-RKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 76.5 bits (188), Expect = 2e-16
Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 13/147 (8%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP--QAAQAYLNVEFPAKVTFTPTVQ 66
+ R V + +G L I V + D G Y C VS+ + L P
Sbjct: 57 KRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116
Query: 67 YLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV 119
+ F+ + +C NP + W K + + L +
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVPD-IRWRKVLEPMPS---TAEISTSGAVLKIFNI 172
Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEV 146
+G Y C N G ++ V
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 43.3 bits (102), Expect = 5e-05
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 10/105 (9%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPK---NRVKIV- 205
P + + + K G+ + + C+ + W + + R +
Sbjct: 8 DPFPPEERPEV-RVKEGKGMVLLCDP--PYHFPDDLSYRWLL-NEFPVFITMDKRRFVSQ 63
Query: 206 -GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
GN+ I + D G Y C VS+ T ++ + P
Sbjct: 64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERT 108
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 110 bits (275), Expect = 3e-27
Identities = 39/272 (14%), Positives = 76/272 (27%), Gaps = 43/272 (15%)
Query: 5 VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFT- 62
V + + + + L P +DSG Y C V N + + E + +
Sbjct: 49 VSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR-IKISAKFVENEPNLCYNA 107
Query: 63 --PTVQYLPFRLQGVVQCH------IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSL 114
Q LP G + C + N + + W KD + L L
Sbjct: 108 QAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK-LQWYKDCKPLLL--DNIHFSGVKDRL 164
Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-------KPPAFTIKPEAMYQRKVG 167
+ V + H+G YTC + + + P + +G
Sbjct: 165 IVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLG 224
Query: 168 ESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEG-------------- 213
+ + C G W + +G + ++ + ++E
Sbjct: 225 SQIQLICNVT---GQLSDIAYW-KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN 280
Query: 214 LRRVDF----GYYECVVSNEVATIVQAAQLVV 241
+ ++ + C N QL+
Sbjct: 281 ISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 105 bits (262), Expect = 2e-25
Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 15/202 (7%)
Query: 75 VVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
V C + N +TW KD + + + L F G Y C N
Sbjct: 24 VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRN 83
Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHC---EAQEAEGTQKPTIT 188
+ + V P +A++++K+ + C E + E + P +
Sbjct: 84 SSYCLRIKISAKF-VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQ 142
Query: 189 WQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAA-----QLVV 241
W +D L + + + + + G Y C S + +
Sbjct: 143 W-YKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL 201
Query: 242 EGTQPHAPYNITGVATEFSVTL 263
E +P P ++ V L
Sbjct: 202 EENKPTRPVIVSPANETMEVDL 223
Score = 57.0 bits (137), Expect = 3e-09
Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 26/172 (15%)
Query: 1 MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQ---AAQAYLNVEFPA 57
+ K L+ L++ V G Y C S Q
Sbjct: 145 KDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204
Query: 58 KVTFTPTVQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLE---PYQTKDIV 107
K T P + V C++ + W + +++ P +D
Sbjct: 205 KPTR-PVIVSPANETMEVDLGSQIQLICNVTGQLSDI-AYWKWNGSVIDEDDPVLGEDYY 262
Query: 108 VMQNGS----------LLFTRVNQNH-QGRYTCTPYNAHGTQGSSGQMEVLV 148
++N + L + + + +TC N HG + Q+ V
Sbjct: 263 SVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 106 bits (266), Expect = 6e-27
Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 15/175 (8%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
+ HI P + V+W +D +++ + + + L V + + GRY+ N
Sbjct: 26 EAHISGFPVPE-VSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84
Query: 134 AHGTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
G S+ ++ V PP F + ++M + G V + G P + + R
Sbjct: 85 GSGQATSTAELLVKAETAPPNFVQRLQSM-TVRQGSQVRLQV---RVTGIPTPVVKFY-R 139
Query: 193 DGVAL-PKNRVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
DG + +I G + I D G Y +N V A+L+V+
Sbjct: 140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 81.7 bits (202), Expect = 3e-18
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 10/136 (7%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQ 73
L I V +SG Y + +NG G+ + A L V+ P + Q
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQAT-STAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT 130
+Q + PT V + +D ++ + D + Q G SLL G Y+
Sbjct: 121 VRLQVRVTGIPTPV-VKFYRDGAEIQS--SLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 131 PYNAHGTQGSSGQMEV 146
N+ G S+ ++ V
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 61.7 bits (150), Expect = 3e-11
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 147 LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-----PKNR 201
+ + P FT +++ G + G P ++W R DG + P +
Sbjct: 1 MTTQAPTFTQPLQSV-VVLEGSTATFEAHI---SGFPVPEVSWFR-DGQVISTSTLPGVQ 55
Query: 202 VKIVGGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP-----HAPYNITG 254
+ G I + + + G Y +N A+L+V+ ++T
Sbjct: 56 ISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT- 114
Query: 255 VATEFSVTLE 264
V V L+
Sbjct: 115 VRQGSQVRLQ 124
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 108 bits (271), Expect = 8e-27
Identities = 52/312 (16%), Positives = 94/312 (30%), Gaps = 51/312 (16%)
Query: 165 KVGESVDMHCEAQEAE--GTQKPTITWQRRDGVALPKNRVKIVGGN-----ITIEGLRRV 217
+G+ + C ++ +P I W R P R + + IT+ L
Sbjct: 13 HLGDPITASCIIKQNCSHLDPEPQILW-RLGAELQPGGRQQRLSDGTQESIITLPHLNHT 71
Query: 218 DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVA--TEFSVTLEWLPGYSGGPDL 275
+ I+ +L G P P+N++ + T S+ +W PG L
Sbjct: 72 QAFLSCSLNWGNSLQILDQVELRA-GYPPAIPHNLSCLMNLTTSSLICQWEPGPETH--L 128
Query: 276 KQNYVIWYR-------EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 328
++ + QG+ +P I L V +N LG
Sbjct: 129 PTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTS 188
Query: 329 MLSNIVVVKTKGPKPGPPRNVSVTEVNNG-------FVISWQPPLERASLIQYYLIKYRT 381
M + + K PP ++ +SW+P + Q ++++
Sbjct: 189 MSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHK- 247
Query: 382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 441
++G W + P + Q + L PAT Y Q+
Sbjct: 248 -----------------------PQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIR 284
Query: 442 GKNELGDGMLSN 453
G S+
Sbjct: 285 CIRWPLPGHWSD 296
Score = 67.3 bits (163), Expect = 1e-12
Identities = 42/301 (13%), Positives = 89/301 (29%), Gaps = 29/301 (9%)
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
P +++ + + W L + + + S++ + Q +
Sbjct: 17 PITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLS 76
Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-I 187
C+ N + Q+E+ PPA + + + C+ + T PT
Sbjct: 77 CS-LNWGNSLQILDQVELRAGYPPAIPHNLSCLMN---LTTSSLICQWEPGPETHLPTSF 132
Query: 188 TWQRRDGVALPKNRVKIVGGNITIEGLRRVDF---------GYYECV-VSNEVATIVQAA 237
T + + + + + +G V N + T +
Sbjct: 133 TLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ 192
Query: 238 QLV--VEGTQPHAPYNITGV-------ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN 288
+ ++ + P T + L W P G + Q + ++ Q
Sbjct: 193 LCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH-INQKCELRHKPQRG 251
Query: 289 K-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKTKGPKPG 344
+ W + P + Q + L PAT Y Q+ G S+ + ++T
Sbjct: 252 EASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA 311
Query: 345 P 345
P
Sbjct: 312 P 312
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 112 bits (280), Expect = 1e-26
Identities = 34/255 (13%), Positives = 70/255 (27%), Gaps = 39/255 (15%)
Query: 220 GYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDL--- 275
G +C SN Q + + +G + + ++W ++ +
Sbjct: 136 GVKKCC-SNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIY 194
Query: 276 ----KQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 331
+ NY I E W + T ++ + + P+ Y+F+V N G +
Sbjct: 195 VVQRRWNYGIHPSEDDATHWQTVAQTT--DERVQLTDIRPSRWYQFRVAAVNVHGTRGFT 252
Query: 332 NIVVVKTKGPK---PGPPRNVSVTEVNNGF------VISWQPPLERASLIQYYLIKYRTD 382
P P N+ + I W P E + +Y + +
Sbjct: 253 APSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWS-- 310
Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
++ + T + + +L P Y ++
Sbjct: 311 -----------------WMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQA 353
Query: 443 KNELGDGMLSNIVVV 457
G L + V
Sbjct: 354 ITYWGQTRLKSAKVS 368
Score = 82.3 bits (202), Expect = 7e-17
Identities = 28/234 (11%), Positives = 55/234 (23%), Gaps = 22/234 (9%)
Query: 246 PHAPYNIT------GVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKD------WL 292
P AP N+ +VT+ W P P +Y +++ +
Sbjct: 267 PPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPV--HHYKVFWSWMVSSKSLVPTKKK 324
Query: 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKTKGPKPGPPRNV 349
T + + +L P Y ++ G L + + + + V
Sbjct: 325 RRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLV 384
Query: 350 SVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQG- 408
+ + +Q L K K P N Y + +
Sbjct: 385 KTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEAC 444
Query: 409 ---NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
I + L+ + Y+ V +
Sbjct: 445 AHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTP 498
Score = 72.3 bits (176), Expect = 1e-13
Identities = 36/263 (13%), Positives = 69/263 (26%), Gaps = 48/263 (18%)
Query: 225 VVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR 284
V + + Q T+P + V + W + P + + +V W+
Sbjct: 384 VKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKK--TEDPTVNRYHVRWFP 441
Query: 285 EQGNKDWLPIPVTPPGSTQ---ITINRLTPATTYEFQVVGKNELGDGMLSNIV------- 334
E + G T I + L+ + Y+ V +
Sbjct: 442 EACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCS 501
Query: 335 VVKTKGPKPGP---------------PRNVSVTEVNNGF----VISWQPPLERA-SLIQY 374
+K K KP P N+S + + SW+ +
Sbjct: 502 ALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTG 561
Query: 375 YLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPAT 434
+ + + + N S + P +T+ L P+T
Sbjct: 562 FQVTWAEVTTESRQNSLPNSIISQSQ----------------ILPSDHYVLTVPNLRPST 605
Query: 435 TYEFQVVGKNELGDGMLSNIVVV 457
Y +V G+G +
Sbjct: 606 LYRLEVQVLTPGGEGPATIKTFR 628
Score = 61.9 bits (149), Expect = 2e-10
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 17/136 (12%)
Query: 246 PHAPYNITGV----ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLP----- 293
P N++ + W + + + + E + + LP
Sbjct: 525 LAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIIS 584
Query: 294 -IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVT 352
+ P +T+ L P+T Y +V G+G + I +T P +
Sbjct: 585 QSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT-IKTFRTPELPPSSAHRSHLK 643
Query: 353 EVNNGFVISWQPPLER 368
+ ++P ER
Sbjct: 644 HRH---PHHYKPSPER 656
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 103 bits (258), Expect = 5e-26
Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 16/175 (9%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP 131
C P + + T+ +VV + G L N G Y C
Sbjct: 21 FFTCTAIGEPE-SIDWYNPQGEKIIS--TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 77
Query: 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
+A G + + + + + F + K GE ++ C + P ++W
Sbjct: 78 TDAKGQTQEA-TVVLEIYQKLTFREVVSPQ-EFKQGEDAEVVCRVS---SSPAPAVSW-L 131
Query: 192 RDGVAL---PKNRVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+ NR ++ N+ I + + D G Y C E + ++V
Sbjct: 132 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 96.4 bits (240), Expect = 2e-23
Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%)
Query: 9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
RVV++K+G L I +D+G+Y C+ ++ G+ Q A L + +
Sbjct: 46 TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP 105
Query: 66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG 125
Q V C + ++P V+W + ++ N +L +N++ +G
Sbjct: 106 QEFKQGEDAEVVCRVSSSPAPA-VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG 164
Query: 126 RYTCTPYNAHGTQGSSGQMEVLV 148
Y C + + V+V
Sbjct: 165 IYRCEGRVEARGEIDFRDIIVIV 187
Score = 59.8 bits (145), Expect = 1e-10
Identities = 31/204 (15%), Positives = 54/204 (26%), Gaps = 34/204 (16%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKI----V 205
TI + + VGES C A G + + G + RV + V
Sbjct: 2 LLQVTISLSKV-ELSVGESKFFTCTA---IGEPESIDWY-NPQGEKIISTQRVVVQKEGV 56
Query: 206 GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH---APYNITGVATEFSVT 262
+TI D G Y C ++ +A ++ +
Sbjct: 57 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQE-FKQGEDAE 115
Query: 263 LEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI------TINRLTPATTYE 316
+ S P V W + + I + +
Sbjct: 116 VVCRV--SSSPAPA---VSWLYHNE-----EVTTISDNRFAMLANNNLQILNINKSDEGI 165
Query: 317 FQVVGKNELGDGMLSN---IVVVK 337
++ G+ E G + IV+V
Sbjct: 166 YRCEGRVEAR-GEIDFRDIIVIVN 188
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 106 bits (265), Expect = 6e-26
Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 37/226 (16%)
Query: 226 VSNEVATIVQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYR 284
+++ +++ +G AP ++ T S++ +W P L Y +
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP---NVQL-TGYRVRVT 56
Query: 285 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
+ + P S+ + ++ L AT YE V + + VV
Sbjct: 57 PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTL--ENVS 114
Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
PPR VT+ ISW+ I + + +
Sbjct: 115 PPRRARVTDATETTITISWRTK---TETITGFQV-------------------------D 146
Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
+ + + P TI L P T Y+ + N+
Sbjct: 147 AVPANGQTPIQRTI-KPDVRSYTITGLQPGTDYKIYLYTLNDNARS 191
Score = 101 bits (253), Expect = 2e-24
Identities = 42/213 (19%), Positives = 67/213 (31%), Gaps = 39/213 (18%)
Query: 239 LVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297
+V P TE ++T+ W + + + + + +
Sbjct: 106 VVTTLENVSPPRRARVTDATETTITISWRTK----TETITGFQVDAVPANGQTPIQRTI- 160
Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV-NN 356
P TI L P T Y+ + N D S+ VV+ P N+ N
Sbjct: 161 KPDVRSYTITGLQPGTDYKIYLYTLN---DNARSSPVVIDASTA-IDAPSNLRFLATTPN 216
Query: 357 GFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
++SWQPP + I Y+I +Y + G+ +P
Sbjct: 217 SLLVSWQPP---RARITGYII-------------------------KYEKPGSPPREVVP 248
Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
PG T+ TI L P T Y V+
Sbjct: 249 RPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 281
Score = 67.1 bits (164), Expect = 1e-12
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 29/130 (22%)
Query: 331 SNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLN 389
S+ + V +GP P ++ T+V W PP + Y +
Sbjct: 9 SSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRV------------ 53
Query: 390 KGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
+ + P S+ + ++ L AT YE V +
Sbjct: 54 -------------RVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTS 100
Query: 450 MLSNIVVVKT 459
+ VV
Sbjct: 101 RPAQGVVTTL 110
Score = 62.1 bits (151), Expect = 6e-11
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 7/143 (4%)
Query: 187 ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
+ +G + +K + TI GL+ Y+ + + ++ T
Sbjct: 145 VDAVPANGQTPIQRTIKPDVRSYTITGLQP--GTDYKIYLYTLNDNARSSPVVIDASTAI 202
Query: 247 HAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
AP N+ +A T S+ + W P Y+I Y + G+ +P PG T+ T
Sbjct: 203 DAPSNLRFLATTPNSLLVSWQP--PRAR--ITGYIIKYEKPGSPPREVVPRPRPGVTEAT 258
Query: 306 INRLTPATTYEFQVVGKNELGDG 328
I L P T Y V+
Sbjct: 259 ITGLEPGTEYTIYVIALKNNQKS 281
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 103 bits (258), Expect = 9e-26
Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 31/202 (15%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPY---------QTKDIVVMQNGSLLFTRVNQNHQG 125
+ C + + V W + D V + + F+ V + G
Sbjct: 20 KLTCTYSGFSSPR-VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNG 78
Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
YTC G + + V PP+ +G + C E +G+
Sbjct: 79 EYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV-PSSVTIGNRAVLTC--SEHDGSPPS 135
Query: 186 TITWQRRDGVALP-------------KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
+W +DG+++ + G++ + + D G Y C N T
Sbjct: 136 EYSW-FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 194
Query: 233 IVQAAQLVVEGTQPHAPYNITG 254
+++ ++ + N+ G
Sbjct: 195 AMRSEAAHMDAVEL----NVGG 212
Score = 93.5 bits (232), Expect = 3e-22
Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 12/162 (7%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVT 60
N+++ + V + + V D+G Y C VS G+ +L V P
Sbjct: 49 NSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP 108
Query: 61 FTPTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKDI---------VVMQ 110
+ + V+ C +P +Y +W KD + K + +
Sbjct: 109 TISVPSSVTIGNRAVLTCSEHDGSPPSEY-SWFKDGISMLTADAKKTRAFMNSSFTIDPK 167
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
+G L+F V G Y C N +GT S + +
Sbjct: 168 SGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209
Score = 63.8 bits (155), Expect = 7e-12
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------K 199
+ + Q ES+ + C G P + W+ G
Sbjct: 2 GSVYTAQSDV-QVPENESIKLTC---TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57
Query: 200 NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+RV IT + R D G Y C+VS E + +
Sbjct: 58 DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 101 bits (254), Expect = 4e-25
Identities = 44/215 (20%), Positives = 71/215 (33%), Gaps = 35/215 (16%)
Query: 246 PHAPYNITGVATEF-SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P P N++ + E + EW G + N+ + +K + T
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHK-FADCKAKRDTPTSC 64
Query: 305 TINR-LTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG---FVI 360
T++ E V +N LG +I KP PP N+SV +
Sbjct: 65 TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 124
Query: 361 SWQPPLERASLIQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT 418
+W P ++ +I Y I+YRT + W + T
Sbjct: 125 TWTNPSIKSVIILKYNIQYRTKDASTWSQIP-------------------------PEDT 159
Query: 419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
+ T+ L P T Y F++ E G G S+
Sbjct: 160 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 194
Score = 57.7 bits (139), Expect = 8e-10
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 240 VVEGTQPHAPYNITGV---ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW--LPI 294
V +P+ P+N++ + + L W + Y I YR + W +P
Sbjct: 98 PVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPP 156
Query: 295 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKTKGPKPGPPRNV 349
T + T+ L P T Y F++ E G G S+ T +P +
Sbjct: 157 EDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214
Score = 38.8 bits (90), Expect = 0.001
Identities = 17/121 (14%), Positives = 27/121 (22%), Gaps = 29/121 (23%)
Query: 338 TKGPKPGPPRNVSVTEVNNG-FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396
+ G P P+N+S W E L + +K
Sbjct: 3 SSGLPPEKPKNLSCIVNEGKKMRCEWDGGRE-THLETNFTLKSEWATH------------ 49
Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINR-LTPATTYEFQVVGKNELGDGMLSNIV 455
+ T T++ E V +N LG +I
Sbjct: 50 --------------KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 95
Query: 456 V 456
Sbjct: 96 F 96
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 103 bits (257), Expect = 1e-24
Identities = 39/237 (16%), Positives = 66/237 (27%), Gaps = 15/237 (6%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP-----TVQYLP 69
DGT+ ++ + +D G+Y+CE + + +Q L V +
Sbjct: 89 FTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQ 148
Query: 70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT---KDIVVMQNGSLLFTRVNQNHQGR 126
V C V+W + YQ + V + HQ
Sbjct: 149 DDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQS 208
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
C S + V P TI+ V + C +A+ T
Sbjct: 209 LACIVNYHMDRFKESLTLNVQY--EPEVTIEGFDGNWYLQRMDVKLTC---KADANPPAT 263
Query: 187 -ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
W +LPK + G Y C +N + T ++ +
Sbjct: 264 EYHW-TTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Score = 89.8 bits (222), Expect = 5e-20
Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 10/144 (6%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
+ P C V+ + + LNV++ +VT + V
Sbjct: 193 ISRYRLVPSREAHQQSLACIVNYHMDRFKE-SLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251
Query: 77 -QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR-VNQNHQGRYTCTPYNA 134
C ANP WT L V QN +L F +N + G Y C N
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPK-----GVEAQNRTLFFKGPINYSLAGTYICEATNP 306
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKP 158
GT+ SGQ+EV + + A
Sbjct: 307 IGTR--SGQVEVNITEAAALEHHH 328
Score = 53.2 bits (127), Expect = 6e-08
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
GSL V + P+ +G Y+CE +N IG Q +N+ A +
Sbjct: 272 GSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRS-GQVEVNITEAAALEHHHHH 330
Query: 66 Q 66
Sbjct: 331 H 331
Score = 38.2 bits (88), Expect = 0.004
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 24/126 (19%)
Query: 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE-AEGTQKPTITWQRRDGVALP 198
+S + + P+ ++ +G V +HC + +TWQ+ +
Sbjct: 2 ASMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQ 61
Query: 199 -----------------KNRVKIVG-----GNITIEGLRRVDFGYYECVVSNEVATIVQA 236
+ RV+ + G I + L D G Y C + ++
Sbjct: 62 NVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRES 121
Query: 237 -AQLVV 241
L V
Sbjct: 122 QLNLTV 127
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 99.1 bits (247), Expect = 2e-24
Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 20/177 (11%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C +P ++W ++ +L+E K I+ N L + + G Y C N G
Sbjct: 25 SCRASGSPEPA-ISWFRNGKLIEE-NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 82
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
++V V P V + C+A EG P ITW+R
Sbjct: 83 EDEKQAFLQVFV--QPHIIQLKNE--TTYENGQVTLVCDA---EGEPIPEITWKRAVDGF 135
Query: 197 LPKNRVKIVGGNI-----------TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
K + G I I+ ++ D G Y+C ++ + ++ L +E
Sbjct: 136 TFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 79.9 bits (197), Expect = 1e-17
Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 17/149 (11%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
E ++ + L + + + D G Y+C +N GE + QA+L V +
Sbjct: 49 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDE-KQAFLQVFVQPHIIQLKNET-- 105
Query: 69 PFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ--------NGSLLFT 117
+ + C + P + +TW + + + + + SL
Sbjct: 106 --TYENGQVTLVCDAEGEPIPE-ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIK 162
Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
V + GRY C + G S +++
Sbjct: 163 DVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 67.9 bits (166), Expect = 2e-13
Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 26/202 (12%)
Query: 151 PPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV--G 206
PA ++ ++ + GE + C A G+ +P I+W R+G + +N + +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSC---RASGSPEPAISW-FRNGKLIEENEKYILKGSN 57
Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH--APYNITGVATEFSVTLE 264
+T+ + D G Y C +N+ + A L V QPH N T VTL
Sbjct: 58 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF-VQPHIIQLKNETTYENG-QVTLV 115
Query: 265 WLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI---------TINRLTPATTY 315
G P + W R + + G ++ I + + +
Sbjct: 116 CDA--EGEP---IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 170
Query: 316 EFQVVGKNELGDGMLSNIVVVK 337
+ + +G S + ++
Sbjct: 171 RYDCEAASRIGGHQKSMYLDIE 192
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 96.3 bits (240), Expect = 3e-24
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 242 EGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
G P AP ++ + + L W S Y ++Y ++G + PG
Sbjct: 14 TGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPG 73
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
Q+TI L PAT Y F+V+ +N+ G G S + V+T+
Sbjct: 74 EMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119
Score = 93.2 bits (232), Expect = 3e-23
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERA-SLIQYYLIKYRTDG 383
G S T GP P PR+V + V+ F+ ++W+ P Y +
Sbjct: 1 GSSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSV------ 54
Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
Y ++G + PG Q+TI L PAT Y F+V+ +
Sbjct: 55 -------------------FYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQ 95
Query: 444 NELGDGMLSNIVVVKTK 460
N+ G G S + V+T+
Sbjct: 96 NKHGSGESSAPLRVETQ 112
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 98.6 bits (245), Expect = 4e-24
Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 47/220 (21%)
Query: 256 ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 315
+ S ++W Y++ +R + + P TI L P Y
Sbjct: 13 SQPNSHPIQWNAPQPSHIS---KYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVY 69
Query: 316 EFQVVGKNELGDGMLSNIVVVKTKG---------------PKPGPPRNVSVTEVN-NGFV 359
E Q++ + G ++ T P + SVTE+ + FV
Sbjct: 70 EGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFV 129
Query: 360 ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
+SW + + + + EY D P
Sbjct: 130 VSWVSA---SDTVSGFRV-------------------------EYELSEEGDEPQYLDLP 161
Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+T + I L P Y V +E G+ L T
Sbjct: 162 STATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 51.6 bits (123), Expect = 9e-08
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 30/119 (25%)
Query: 345 PPRNVSVTEVN---NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P V +TE N I W P + S I Y++++R
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKN------------------ 41
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
W + P TI L P YE Q++ + G ++ T
Sbjct: 42 ------SVGRWKEATI-PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTS 93
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 102 bits (255), Expect = 4e-24
Identities = 49/274 (17%), Positives = 75/274 (27%), Gaps = 41/274 (14%)
Query: 186 TITWQRRDGVALPKNRVKIVGGN-ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
+ + N + + L Y VS+ + T
Sbjct: 127 LVRYSPVKNEEDVAELSISPSDNAVVLTNLLP--GTEYVVSVSSVYEQHESTPLRGRQKT 184
Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
+P I T S T+ W+ Y I + + P
Sbjct: 185 GLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNS 240
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISW 362
IT+ LTP T Y +V N + L + + PR++ V +ISW
Sbjct: 241 ITLTNLTPGTEYVVSIVALNGREESPLL----IGQQSTVSDVPRDLEVVAATPTSLLISW 296
Query: 363 QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422
P A ++YY I Y E G + P
Sbjct: 297 DAP---AVTVRYYRI-------------------------TYGETGGNSPVQEFTVPGSK 328
Query: 423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
+ TI+ L P Y V GD S+ +
Sbjct: 329 STATISGLKPGVDYTITVYAVTGRGDSPASSKPI 362
Score = 98.8 bits (246), Expect = 6e-23
Identities = 42/273 (15%), Positives = 73/273 (26%), Gaps = 41/273 (15%)
Query: 186 TITWQRRDGVALPKNRVKIVGG--NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
IT +G + + T + L Y V
Sbjct: 35 RITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP--GLEYNVSVYTVKDDKESVPISDTII 92
Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
P ++ ++ + W P S N+++ Y N++ + P
Sbjct: 93 PAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLT---NFLVRYSPVKNEEDVAELSISPSDN 149
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
+ + L P T Y V E + S + + K P + +++ N F +
Sbjct: 150 AVVLTNLLPGTEYVVSVSSVYEQHE---STPLRGRQKTG-LDSPTGIDFSDITANSFTVH 205
Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
W P + I Y I + + P
Sbjct: 206 WIAP---RATITGYRI-------------------------RHHPEHFSGRPREDRVPHS 237
Query: 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNI 454
IT+ LTP T Y +V N + L
Sbjct: 238 RNSITLTNLTPGTEYVVSIVALNGREESPLLIG 270
Score = 97.2 bits (242), Expect = 2e-22
Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 38/208 (18%)
Query: 246 PHAPYN--ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS-T 302
P N + +T+ W + Y I + + +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTPDIT---GYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
T + L+P Y V + + + + ++ P PP ++ T + + ++
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII----PAVPPPTDLRFTNIGPDTMRVT 114
Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
W PP + + +L+ Y N++ + P
Sbjct: 115 WAPP--PSIDLTNFLV-------------------------RYSPVKNEEDVAELSISPS 147
Query: 422 STQITINRLTPATTYEFQVVGKNELGDG 449
+ + L P T Y V E +
Sbjct: 148 DNAVVLTNLLPGTEYVVSVSSVYEQHES 175
Score = 54.5 bits (131), Expect = 3e-08
Identities = 14/119 (11%), Positives = 30/119 (25%), Gaps = 28/119 (23%)
Query: 343 PGPPRNVSVTEV--NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
PP N+ + +SW+ I Y I + + +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTT--PDITGYRITTTPTNGQQGNSLEE-------- 51
Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
V + T + L+P Y V + + + + ++
Sbjct: 52 ----------------VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA 94
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 98.0 bits (244), Expect = 6e-24
Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 36/204 (17%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
P +++ V T+ S+ L W P S Y I G + T+
Sbjct: 25 QPTDLSFVDITDSSIGLRWTPLNSSTII---GYRITVVAAGEGIPIFEDFVDSSVGYYTV 81
Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPP 365
L P Y+ V G+ + + PP ++ T + + ++W PP
Sbjct: 82 TGLEPGIDYDISVYTVKNGGESTPTTLTQQTA----VPPPTDLRFTNIGPDTMRVTWAPP 137
Query: 366 LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQI 425
+ + +L+ Y N++ + P +
Sbjct: 138 --PSIDLTNFLV-------------------------RYSPVKNEEDVAELSISPSDNAV 170
Query: 426 TINRLTPATTYEFQVVGKNELGDG 449
+ L P T Y V E +
Sbjct: 171 VLTNLLPGTEYVVSVSSVYEQHES 194
Score = 59.1 bits (143), Expect = 2e-10
Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 29/138 (21%)
Query: 320 VGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIK 378
+G + S +V + P P ++S ++ + + W P +S I Y I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMEVP-QPTDLSFVDITDSSIGLRWTPL--NSSTIIGYRI- 56
Query: 379 YRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEF 438
G + T+ L P Y+
Sbjct: 57 ------------------------TVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDI 92
Query: 439 QVVGKNELGDGMLSNIVV 456
V G+ + +
Sbjct: 93 SVYTVKNGGESTPTTLTQ 110
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 98.0 bits (244), Expect = 7e-24
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 16/200 (8%)
Query: 53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL---EPYQTKDIVVM 109
+FP ++ P+ + + C + PT + W K + + +++
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-IEWYKGGERVETDKDDPRSHRMLL 64
Query: 110 QNGSLLFTRV-----NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR 164
+GSL F R+ ++ +G Y C N G S + F P +
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIVGGNITIEGLRRVDFGYY 222
VGE M C+ G +PTI+W ++DG L R+ I GG + I R+ D G Y
Sbjct: 125 -VGEPAVMECQP--PRGHPEPTISW-KKDGSPLDDKDERITIRGGKLMITYTRKSDAGKY 180
Query: 223 ECVVSNEVATIV-QAAQLVV 241
CV +N V + A+L V
Sbjct: 181 VCVGTNMVGERESEVAELTV 200
Score = 85.6 bits (212), Expect = 2e-19
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 11/165 (6%)
Query: 2 NTKVGSLETRVVIKKDGTLVI-----NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
T + ++ G+L D G+Y+C N +GE + A L V
Sbjct: 51 ETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110
Query: 57 AKV-TFTPTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSL 114
P+ + V++C + +P ++W KD L+ + + ++ G L
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT-ISWKKDGSPLDD--KDERITIRGGKL 167
Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
+ T ++ G+Y C N G + S E+ V + P+F
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESEV-AELTVLERPSFVKAAA 211
Score = 61.0 bits (148), Expect = 5e-11
Identities = 48/198 (24%), Positives = 68/198 (34%), Gaps = 39/198 (19%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL------PKNRVKI 204
PP P + K GE ++C+A EG PTI W + G + P++ +
Sbjct: 9 PPRIVEHPSDLIVSK-GEPATLNCKA---EGRPTPTIEWYK-GGERVETDKDDPRSHRML 63
Query: 205 VGG------NITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEGTQPH---APYNITG 254
+ I R D G Y CV N + V A L V + P ++
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMV 123
Query: 255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP------GSTQITINR 308
E +E P G P+ + W KD P+ G IT R
Sbjct: 124 AVGE-PAVMECQP-PRGHPEPT---ISWK-----KDGSPLDDKDERITIRGGKLMITYTR 173
Query: 309 LTPATTYEFQVVGKNELG 326
+ A Y VG N +G
Sbjct: 174 KSDAGKY--VCVGTNMVG 189
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 96.7 bits (241), Expect = 1e-23
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 18/178 (10%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
C + +P V W + + + K + G L+ V + Y N
Sbjct: 25 VCKVTGHPKPI-VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 134 AHGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
G+ + +EV V P A++ GE V + G P ITWQ
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA-LRGEVVSIKIPF---SGKPDPVITWQ 139
Query: 191 RRDGVALPKN-RVKIVGGN-----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+ + N +++ + G+ R D G+Y N + +L V
Sbjct: 140 K-GQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 78.2 bits (193), Expect = 6e-17
Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 15/151 (9%)
Query: 7 SLETRVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT---F 61
L+ R+ K G L+I V DD+ +Y +N G A L VE PAK+
Sbjct: 49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKT 107
Query: 62 TPTVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS----LL 115
+ + VV + P +TW K + L++ V+ S +
Sbjct: 108 LEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQKGQDLIDN--NGHYQVIVTRSFTSLVF 164
Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
V + G Y N G + +++V
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 59.0 bits (143), Expect = 2e-10
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----PKNRVKIVG 206
P F + + + + + C+ G KP + W R G + K R++
Sbjct: 4 APHFKEELRNL-NVRYQSNATLVCKV---TGHPKPIVKWYR-QGKEIIADGLKYRIQEFK 58
Query: 207 GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
G I + D Y+ +N+ ++ A L VE
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL 104
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 96.7 bits (241), Expect = 1e-23
Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 20/177 (11%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
C I P + W + + L ++ + +G +L Q +G YTC N
Sbjct: 28 SCQIVGRPLPD-IKWYRFGKELIQ--SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84
Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTITWQR 191
G +S ++ + P F + G ++ +H G P +TW
Sbjct: 85 EVGEVETSSKLLLQA--TPQFHPGYPLKEKYYGAVGSTLRLHVMY---IGRPVPAMTWFH 139
Query: 192 RDGVALPKN-RVKIV--GGNIT---IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
L + + I R+ G Y+ +SN T+ + ++
Sbjct: 140 -GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 79.4 bits (196), Expect = 2e-17
Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 14/149 (9%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
+ + DG TL + +D G+Y C +N +GE + + L ++ + ++
Sbjct: 53 KYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVE-TSSKLLLQATPQFHPGYPLKE 111
Query: 68 LPFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVN- 120
+ G + P +TW ++LL+ +++I + L+ V
Sbjct: 112 KYYGAVGSTLRLHVMYIGRPVPA-MTWFHGQKLLQN--SENITIENTEHYTHLVMKNVQR 168
Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
+ H G+Y N GT + +E+ +
Sbjct: 169 KTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 96.4 bits (240), Expect = 2e-23
Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 23/192 (11%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN----QNHQGRYTCTPY 132
C + +P + W K+ + + Q++ V+ Q G + R+ Y C
Sbjct: 27 YCAARGDPPPS-IVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAE 85
Query: 133 NAHGTQGS-SGQMEVLV-----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
N G S + + P T P VG +V M C+A G P
Sbjct: 86 NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE-VGHTVLMTCKAI---GNPTPN 141
Query: 187 ITWQRRDGVALPKN--RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVE- 242
I W + + + + R + G + IE R D G YECV N + T +A L V+
Sbjct: 142 IYWIK-NQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200
Query: 243 ---GTQPHAPYN 251
GT+ H ++
Sbjct: 201 RRVGTKHHHHHH 212
Score = 93.7 bits (233), Expect = 2e-22
Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 15/162 (9%)
Query: 9 ETRVVIKKDGTLVI----NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT 64
V+++ G + I D Y C NG+G+ +A A L + K
Sbjct: 52 SRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFP 111
Query: 65 VQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT 117
V + + C NPT + W K++ ++ + +++G L
Sbjct: 112 VITQGPGTRVIEVGHTVLMTCKAIGNPTPN-IYWIKNQTKVDM--SNPRYSLKDGFLQIE 168
Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
+ QG+Y C N+ GT+ S + V+ T
Sbjct: 169 NSREEDQGKYECVAENSMGTEHSKA-TNLYVKVRRVGTKHHH 209
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 99.9 bits (249), Expect = 3e-23
Identities = 45/274 (16%), Positives = 79/274 (28%), Gaps = 40/274 (14%)
Query: 186 TITWQRRD-GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
IT G+ + ++ V G T+ GL Y+ V + A + + T
Sbjct: 128 RITVVAAGEGIPIFEDFVDSSVGYYTVTGLEP--GIDYDISVITLINGGESAPTTLTQQT 185
Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
P ++ ++ + W P S N+++ Y N++ + P
Sbjct: 186 AVPPPTDLRFTNIGPDTMRVTWAPPPSIDLT---NFLVRYSPVKNEEDVAELSISPSDNA 242
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISW 362
+ + L P T Y V E + P + +++ N F + W
Sbjct: 243 VVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK----TGLDSPTGIDFSDITANSFTVHW 298
Query: 363 QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422
P + I Y I + + P
Sbjct: 299 IAP---RATITGYRI-------------------------RHHPEHFSGRPREDRVPHSR 330
Query: 423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
IT+ LTP T Y +V N + L
Sbjct: 331 NSITLTNLTPGTEYVVSIVALNGREESPLLIGQQ 364
Score = 96.0 bits (239), Expect = 5e-22
Identities = 39/268 (14%), Positives = 71/268 (26%), Gaps = 40/268 (14%)
Query: 186 TITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
IT +G + T + L Y V
Sbjct: 36 RITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP--GLEYNVSVYTVKDDKESVPISDTII 93
Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ +++ V T+ S+ L W P S Y I G +
Sbjct: 94 PEVPQLTDLSFVDITDSSIGLRWTPLNSSTII---GYRITVVAAGEGIPIFEDFVDSSVG 150
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
T+ L P Y+ V+ G+ + + PP ++ T + + ++
Sbjct: 151 YYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTA----VPPPTDLRFTNIGPDTMRVT 206
Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
W PP + + +L+ Y N++ + P
Sbjct: 207 WAPP--PSIDLTNFLV-------------------------RYSPVKNEEDVAELSISPS 239
Query: 422 STQITINRLTPATTYEFQVVGKNELGDG 449
+ + L P T Y V E +
Sbjct: 240 DNAVVLTNLLPGTEYVVSVSSVYEQHES 267
Score = 94.1 bits (234), Expect = 3e-21
Identities = 28/215 (13%), Positives = 53/215 (24%), Gaps = 38/215 (17%)
Query: 246 PHAPYN--ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-PPGST 302
P N + +T+ W + Y I + + +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERSTTPDIT---GYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
T + L+P Y V D S + P+ ++S ++ + +
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVK---DDKESVPISDTII-PEVPQLTDLSFVDITDSSIGLR 115
Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
W P +S I Y I G +
Sbjct: 116 WTPL--NSSTIIGYRI-------------------------TVVAAGEGIPIFEDFVDSS 148
Query: 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
T+ L P Y+ V+ G+ + +
Sbjct: 149 VGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQ 183
Score = 57.5 bits (139), Expect = 4e-09
Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 8/110 (7%)
Query: 240 VVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
+ T +P I T S T+ W+ Y I + + P
Sbjct: 272 GRQKTGLDSPTGIDFSDITANSFTVHWIAP-RATIT---GYRIRHHPEHFSGRPREDRVP 327
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
IT+ LTP T Y +V N + L I T +
Sbjct: 328 HSRNSITLTNLTPGTEYVVSIVALNGREESPLL-IGQQST--VSAHHHHH 374
Score = 49.8 bits (119), Expect = 1e-06
Identities = 17/120 (14%), Positives = 26/120 (21%), Gaps = 31/120 (25%)
Query: 343 PGPPRNVSVTEV--NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
PP N+ + +SW+ I Y I
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTN----------------- 43
Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
G + V + T + L+P Y V D S +
Sbjct: 44 -------GQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVK---DDKESVPISDTII 93
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 95.7 bits (238), Expect = 5e-23
Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 26/193 (13%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ----NHQGRYTCTPY 132
C +P + + W K + + Q +++ +GS R+ + Y C
Sbjct: 27 ICQATGDPRPK-IVWNKKGKKVSN-QRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS 84
Query: 133 NAHGTQGSSGQMEVLV-----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187
N G S ++ VL R P + P+ + + M C A G P I
Sbjct: 85 NNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKV-VERTRTATMLCAAS---GNPDPEI 140
Query: 188 TWQRRDGVALP----KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQ 238
TW + D + + R+K + G + IE D G YECV +N T A A
Sbjct: 141 TWFK-DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPAN 199
Query: 239 LVVEGTQPHAPYN 251
L V GT H ++
Sbjct: 200 LYVRGT-KHHHHH 211
Score = 81.8 bits (202), Expect = 4e-18
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 18/167 (10%)
Query: 4 KVGSLETRVVIKKDGT---LVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV 59
KV + V+ DG+ L I P+ + D +Y C SN +GE L V ++
Sbjct: 46 KVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISV-STRLTVLREDQI 104
Query: 60 TFTPTVQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEP----YQTKDIVV 108
+ +L+ V C NP + +TW KD ++ + K +
Sbjct: 105 PRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDTSNNNGRIKQLRS 163
Query: 109 MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT 155
G+L + ++ QG+Y C N+ GT+ S+ + VR
Sbjct: 164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSA-PANLYVRGTKHHH 209
Score = 64.1 bits (156), Expect = 5e-12
Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-- 205
PP FT P G C +A G +P I W + G + R +++
Sbjct: 3 GETPPRFTRTPVDQ-TGVSGGVASFIC---QATGDPRPKIVW-NKKGKKVSNQRFEVIEF 57
Query: 206 ----GGNITIEGLRRV-DFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
G + I+ LR D YECV SN V I + +L V
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR 106
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 96.4 bits (240), Expect = 1e-22
Identities = 29/215 (13%), Positives = 56/215 (26%), Gaps = 36/215 (16%)
Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
P I ++ +EW P ++ Y G + P +
Sbjct: 13 PVIDGPTQILVRDVSDTVAFVEWTPP----RAKVDFILLKYGLVGGEGGKTTFRLQPPLS 68
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
Q ++ L P + YE + + S+ P+N+ V +
Sbjct: 69 QYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTE----IDAPKNLRVGSRTATSLDLE 124
Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
W + Q Y + Y T + +P
Sbjct: 125 WDNS---EAEAQEYKVVYSTLAG-----------------------EQYHEVLVPKGIGP 158
Query: 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
+T+ T+ L P T Y + + + +
Sbjct: 159 TTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNA 193
Score = 91.8 bits (228), Expect = 5e-21
Identities = 43/277 (15%), Positives = 81/277 (29%), Gaps = 45/277 (16%)
Query: 186 TITWQRRDGVALPKNRVKIVGGN-ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
+ + G + +++ LR YE +S T A T
Sbjct: 46 LLKYGLVGGEGGKTTFRLQPPLSQYSVQALRP--GSRYEVSISAVRGTNESDASSTQFTT 103
Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW--LPIPVTPPGS 301
+ AP N+ + T S+ LEW + Q Y + Y + + + +P +
Sbjct: 104 EIDAPKNLRVGSRTATSLDLEWDNSEAEA----QEYKVVYSTLAGEQYHEVLVPKGIGPT 159
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVI 360
T+ T+ L P T Y + + + +T+ PR++ VT + +
Sbjct: 160 TKTTLTDLVPGTEYGVGISAVMNSKQS-IPATMNARTE---LDSPRDLMVTASSETSISL 215
Query: 361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420
W + I +Y I + + P
Sbjct: 216 IWTKA---SGPIDHYRITFTPSSGISS---------------------------EVTVPR 245
Query: 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
T T+ L P Y + + + S +
Sbjct: 246 DRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAF 282
Score = 57.1 bits (138), Expect = 3e-09
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 29/118 (24%)
Query: 341 PKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
P P + V +V++ + W PP + + + L+
Sbjct: 13 PVIDGPTQILVRDVSDTVAFVEWTPPRAK---VDFILL---------------------- 47
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
+Y G + P +Q ++ L P + YE + + S+
Sbjct: 48 ---KYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFT 102
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 94.2 bits (234), Expect = 2e-22
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 22/190 (11%)
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDI-VVMQNGSLLFTRVNQN----HQGRYTCTPY 132
C ++ P + W KD + + K V ++G+L F R Q G Y C
Sbjct: 31 CKVEGKPEPT-IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAK 89
Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
N G S + F ++P+ GE+ + C +G +PT+ W +
Sbjct: 90 NRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA-KGETALLECG--PPKGIPEPTLIWIK- 145
Query: 193 DGVALPK---------NRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVV 241
DGV L +RV+IV GGN+ I + +D G Y+C+ N V T A+L+V
Sbjct: 146 DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205
Query: 242 EGTQPHAPYN 251
+ + A ++
Sbjct: 206 Q-VKAAAHHH 214
Score = 77.6 bits (191), Expect = 1e-16
Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 14/165 (8%)
Query: 6 GSLETRVVIKKDGTL----VINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVT 60
++ V KDG L + D G Y C N +G+ + A L +
Sbjct: 53 NEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR 112
Query: 61 FTPTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKD------IVVMQNGS 113
P + +++C K P + W KD L+ + + ++ G+
Sbjct: 113 VEPKDTRVAKGETALLECGPPKGIPEPT-LIWIKDGVPLDDLKAMSFGASSRVRIVDGGN 171
Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP 158
LL + V +G Y C N GT+ SS +++V+ A
Sbjct: 172 LLISNVEPIDEGNYKCIAQNLVGTRESSY-AKLIVQVKAAAHHHH 215
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 94.2 bits (234), Expect = 2e-22
Identities = 41/193 (21%), Positives = 69/193 (35%), Gaps = 26/193 (13%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDI--VVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
+C NP + W K+ + + V Q+ SL+ V + +G YTC N
Sbjct: 40 RCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 98
Query: 135 HGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
+G+ + ++V+ R +P P VG V+ C+ +P I W +
Sbjct: 99 YGSINHTYHLDVVERSRHRPILQAGLPANAS-TVVGGDVEFVCKVY---SDAQPHIQWIK 154
Query: 192 RDGVA--------------LPKNRVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQA 236
L + + + + + D G Y C VSN + Q+
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 237 AQLVVEGTQPHAP 249
A L V + AP
Sbjct: 215 AWLTVLP-KQQAP 226
Score = 82.3 bits (203), Expect = 4e-18
Identities = 31/169 (18%), Positives = 48/169 (28%), Gaps = 24/169 (14%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
+ V + +L++ V D G Y C V N G +L+V + P +
Sbjct: 64 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HTYHLDVV--ERSRHRPIL 120
Query: 66 QYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKD------------I 106
Q V C + ++ + W K D I
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179
Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-KPPAF 154
L V + G Y C N G S + VL + + P
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228
Score = 70.7 bits (173), Expect = 3e-14
Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 37/228 (16%)
Query: 148 VRKPPAFTIKPE---AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---- 200
++ P +T + ++ +V C A G PT+ W + +G +
Sbjct: 12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPA---GGNPMPTMRWLK-NGKEFKQEHRIG 67
Query: 201 --RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG---- 254
+V+ ++ +E + D G Y CVV NE +I L V H P G
Sbjct: 68 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPAN 127
Query: 255 --VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE------QGNKDWLPIPVTPP------- 299
V Q ++ W + + D LP
Sbjct: 128 ASTVVGGDVEFVCKV--YSDA---QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182
Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR 347
+ + + +T A E+ N +G S + V K PG +
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 98.9 bits (245), Expect = 2e-22
Identities = 40/287 (13%), Positives = 86/287 (29%), Gaps = 44/287 (15%)
Query: 7 SLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
+ E R+++ ++VI + +D+G Y+C + + + F + +
Sbjct: 274 AFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEEST 333
Query: 62 TPTVQYLPFRLQG---VVQCHIKANPTFQYVTWTK---------------DKRLLEPYQT 103
P + + G V C + W + + Y+
Sbjct: 334 IPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEG 393
Query: 104 KDIVVMQNGSLLFT----RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
+ ++ + G+ FT ++ G Y C + +K
Sbjct: 394 RLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL----WRTTVEIKIIEGEPNLKVP 449
Query: 160 AMYQRKVGESVDMHCE-AQEAEGTQKPTITWQRRDGVALPKNRVKIVG-----------G 207
+GE++ + C + +K W ALP
Sbjct: 450 GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLV 509
Query: 208 NITIEGLRRVDFGYYECVVSNEVATIVQ-AAQLVVEGTQPHAPYNIT 253
++T+ + R D G+Y C V A + VE + +++
Sbjct: 510 SLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVS 556
Score = 86.6 bits (213), Expect = 3e-18
Identities = 59/403 (14%), Positives = 112/403 (27%), Gaps = 71/403 (17%)
Query: 11 RVVIKKDG------TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT 64
R+ + G ++VIN + D+G Y+C+ + + A L V P
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNK-KNADLQVLKPEPELVYED 230
Query: 65 V--------QYLP-FRLQGVVQCHIKANPTFQYVTWTKDKRLLEP---YQTKDIVVMQNG 112
+ P C + V T KR +
Sbjct: 231 LRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSF 290
Query: 113 SLLFTRVNQNHQGRYTCTPYNAHG-TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
S++ T + + GRY C ++ +GS Q L + + + + G SV
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVA 350
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN----------------------- 208
+ C + +I + A +V
Sbjct: 351 VLC---PYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFT 407
Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL--EWL 266
+ + L D G+Y C+ + + ++EG ++ + +
Sbjct: 408 VILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFP 467
Query: 267 PGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQI-----------TINRLTP--A 312
+S W + LP P + T+N +T
Sbjct: 468 CKFSSYE------KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADE 521
Query: 313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN 355
Y V + + V V + K R+VS+ + +
Sbjct: 522 GWYWC-GVKQGHFYGETAAVYVAV--EERKAAGSRDVSLAKAD 561
Score = 84.3 bits (207), Expect = 1e-17
Identities = 51/326 (15%), Positives = 96/326 (29%), Gaps = 46/326 (14%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC 78
+ I + DDSG Y C + L V + V + + C
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLS-FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134
Query: 79 HIKANPTFQYVTWTKDKRLLEPYQTKD-------------IVVMQNGSLLFT----RVNQ 121
K + + K L + + G LLF+ ++
Sbjct: 135 PFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194
Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVL------VRKPPAFTIKPEAMYQRKVGESVDMHCE 175
+ G+Y C + + + ++VL V + ++ +V C
Sbjct: 195 SDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLC- 253
Query: 176 AQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGN------ITIEGLRRVDFGYYECVVSN 228
+ + A R+ + + + I GLR+ D G Y C +
Sbjct: 254 --RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311
Query: 229 EVATIVQAAQLV------VEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIW 282
+ + E T P +P + GVA SV + Y+ ++ W
Sbjct: 312 DGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGS-SVAVLCP--YNRKE--SKSIKYW 366
Query: 283 YREQGNKDWL-PIPVTPPGSTQITIN 307
+G ++ P+ V G +
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVKAQYE 392
Score = 54.2 bits (129), Expect = 6e-08
Identities = 43/303 (14%), Positives = 87/303 (28%), Gaps = 43/303 (14%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFT----RVNQNHQGRYTCTPYNAHGTQGSSGQM 144
+ + + Y + + + F +++Q+ GRY C G S +
Sbjct: 48 TLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR--GLSFDV 105
Query: 145 EVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------ 198
+ V + P + +Y +G +V ++C + E QK ++ G+
Sbjct: 106 SLEVSQGPGLLNDTK-VYTVDLGRTVTINCPF-KTENAQKRKS-LYKQIGLYPVLVIDSS 162
Query: 199 -------KNRVKIV-------GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
R+++ ++ I LR D G Y C ++ + + A L V
Sbjct: 163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 222
Query: 245 QPHAPYNITGVATEFSVTLEWLPGYSG-----GPDLKQNYVIWYREQGNKDWLPIPVT-- 297
+P Y + F L + V+ +
Sbjct: 223 EPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLN 282
Query: 298 ---PPGSTQITINRLTPATTYEFQVVGKNELGDGM----LSNIVVVKTKGPKPGPPRNVS 350
GS + I L + ++ + + V + P P V
Sbjct: 283 PQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK 342
Query: 351 VTE 353
Sbjct: 343 GVA 345
Score = 45.0 bits (105), Expect = 4e-05
Identities = 22/149 (14%), Positives = 37/149 (24%), Gaps = 23/149 (15%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--------------KNRVKIVGG---- 207
G SV + C + W R+ R +
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 208 --NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEW 265
+ I L + D G Y+C + + L V P + + T+
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVS-QGPGLLNDTKVYTVDLGRTVTI 132
Query: 266 LPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
+ Q Y++ G L I
Sbjct: 133 NCPFKTEN--AQKRKSLYKQIGLYPVLVI 159
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 93.0 bits (231), Expect = 3e-22
Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 24/177 (13%)
Query: 77 QCHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
QC++ ++ Y WTK+ L N + G Y C H
Sbjct: 24 QCNLTSSSHTLMYSYWTKNGVELTA----TRKNASNMEYRINKPRAEDSGEYHCV---YH 76
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
+ V+ P T + + G+ M+C++ G P W++
Sbjct: 77 FVSAPKANATIEVKAAPDITGHKRSENKN-EGQDAMMYCKS---VGYPHPEWMWRK-KEN 131
Query: 196 ALPKN------RVKIV----GGNITIEGLR-RVDFGYYECVVSNEVATIVQAAQLVV 241
+ + R I+ + I L+ D G YEC +N + + + L V
Sbjct: 132 GVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 74.9 bits (184), Expect = 6e-16
Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
L + IN ++DSG Y C V + + P+ A A + V+ +T +
Sbjct: 46 LTATRKNASNMEYRINKPRAEDSGEYHC-VYHFVSAPK-ANATIEVKAAPDITGHKRSEN 103
Query: 68 LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP---YQTKDIVVMQNG---SLLFTRVN- 120
++ C P + W K + + + ++ L +
Sbjct: 104 KNEGQDAMMYCKSVGYPHPE-WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQI 162
Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
G Y C N+ G+ S + V V
Sbjct: 163 TEDPGEYECNATNSIGSASVSTVLRVRV 190
Score = 61.8 bits (150), Expect = 2e-11
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 11/118 (9%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ-RRDGVALPKNRVKIVGGNI 209
P E + R V + C + + ++GV L R
Sbjct: 3 EPRIVTSEEVI-IRDSLLPVTLQCNL---TSSSHTLMYSYWTKNGVELTATRKNASNMEY 58
Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH---APYNITGVATEFSVTLE 264
I R D G Y CV + V+ A + V+ P + +
Sbjct: 59 RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA-APDITGHKRSEN-KNEGQDAMMY 113
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 92.3 bits (229), Expect = 6e-22
Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 19/164 (11%)
Query: 89 VTWTKDKRLLEPYQTKDI----------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138
V W +D ++LE + + L T + + G+Y C + H T
Sbjct: 35 VHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTF 94
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVAL 197
S V + P F +PE ++ C+AQ G +P + W +D V L
Sbjct: 95 VSQ-PGYVGLEGLPYFLEEPEDR-TVAANTPFNLSCQAQ---GPPEPVDLLW-LQDAVPL 148
Query: 198 PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
++ + GL + C N +
Sbjct: 149 ATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATIT 190
Score = 82.3 bits (203), Expect = 2e-18
Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 8/144 (5%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
+ + L I + D+G Y C V G + Y+ +E P + +
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTV 118
Query: 69 PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
+ C + P + W +D L SL +N+ ++
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP----QRSLHVPGLNK--TSSFS 172
Query: 129 CTPYNAHGTQGSSGQMEVLVRKPP 152
C +NA G S + P
Sbjct: 173 CEAHNAKGVTTSRTA--TITVLPQ 194
Score = 59.9 bits (145), Expect = 9e-11
Identities = 41/207 (19%), Positives = 68/207 (32%), Gaps = 37/207 (17%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--------- 200
+ F P + G + + C+ Q +G P + W RDG L
Sbjct: 1 EESPFVGNPGNI-TGARGLTGTLRCQLQ-VQGE-PPEVHW-LRDGQILELADSTQTQVPL 56
Query: 201 -----RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEGTQPH---APYN 251
IV + I L+ D G Y+C+V T V Q + +EG P+ P +
Sbjct: 57 GEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-LPYFLEEPED 115
Query: 252 ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ--ITINRL 309
T A L G P+ ++W +D +P+ P Q + + L
Sbjct: 116 RTVAANT-PFNLSCQA--QGPPEPVD--LLWL-----QDAVPLATAPGHGPQRSLHVPGL 165
Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVV 336
+++ N G +
Sbjct: 166 NKTSSF--SCEAHNAKGVTTSRTATIT 190
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 96.6 bits (239), Expect = 1e-21
Identities = 46/281 (16%), Positives = 84/281 (29%), Gaps = 38/281 (13%)
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYEC 224
G ++ + C + I R + L V I NI +
Sbjct: 216 LAGSNMTICCMSPT--KVLSGQIGNTLRPLIHLYGQTVAIHILNIPVS---ENSGTNIIF 270
Query: 225 VVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF-SVTLEWLPGYSGGP--DLKQNYVI 281
+ ++V V A P P ++ + + W PG G Y +
Sbjct: 271 ITDDDVYGTVVFAGYP-----PDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTL 325
Query: 282 WYREQGNKDWLPIPVTPP-GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG 340
+ G + ++ + + F + G+N LG S +V+ T+
Sbjct: 326 FESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-SAVVINVTER 384
Query: 341 PKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
P P ++ V ++N+ V SW P + I+ S K
Sbjct: 385 VAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKK------------- 431
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
I + + +++L P T Y F+V
Sbjct: 432 ---------EVRNATIRGAEDSTYHVAVDKLNPYTAYTFRV 463
Score = 41.5 bits (96), Expect = 5e-04
Identities = 21/165 (12%), Positives = 41/165 (24%), Gaps = 34/165 (20%)
Query: 287 GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
GN I + + I I + + ++ + V G P P
Sbjct: 237 GNTLRPLIHLYGQ-TVAIHILNIPVSENSGTNIIFITDDDVYG-----TVVFAGYPPDVP 290
Query: 347 RNVSVTEVNNG-FVISWQPPLE---RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
+ +S + + SW P Y + G
Sbjct: 291 QKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAV--------------- 335
Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
+ I + ++ + + F + G+N LG
Sbjct: 336 ---------FHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLG 371
Score = 32.2 bits (72), Expect = 0.38
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 21/91 (23%)
Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
K +++ T N + +W PL + + I+ +S
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDIC---------------IKDRFHSC 47
Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLT 431
+ IP PG ++TIN L
Sbjct: 48 HPLETTN-----VKIPALSPGDHEVTINYLN 73
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 91.0 bits (226), Expect = 1e-21
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 16/173 (9%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP 131
+ C ++ + W KD +++ I V + G L V ++ GRY C
Sbjct: 21 KLNCSVEGMEEPD-IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV 79
Query: 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQ 190
+ T+ S + + V P FT++P+ + + CEA G +P TI W
Sbjct: 80 EDGGETEISQ-PVWLTVEGVPFFTVEPKDLAVP-PNAPFQLSCEAV---GPPEPVTIVW- 133
Query: 191 RRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVE 242
R + + + C N + A + ++
Sbjct: 134 WRGTTKIGGP----APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 82.9 bits (205), Expect = 8e-19
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 8/121 (6%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
G L + V D+G Y C+V +G + +L VE T P +P +
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQL 118
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C P + W + + + ++C +N G
Sbjct: 119 SCEAVGPPEPVTIVWWRGTTKIGG--------PAPSPSVLNVTGVTQSTMFSCEAHNLKG 170
Query: 137 T 137
Sbjct: 171 L 171
Score = 49.0 bits (117), Expect = 5e-07
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
T++ V+N G S ++ CE N G + A ++++
Sbjct: 138 TKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 91.9 bits (228), Expect = 1e-21
Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 25/161 (15%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---------------E 54
+ L+ N V D+G Y+C V+N + + L+V E
Sbjct: 57 KEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116
Query: 55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSL 114
++ PT Q L V+QC +P Y W K++ L
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY-QWFKNELPLTHE--------TKKLY 167
Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT 155
+ V+ HQG Y C YN +Q S +E+++ +
Sbjct: 168 MVPYVDLEHQGTYWCHVYNDRDSQDSKK-VEIIIDELNNLG 207
Score = 87.6 bits (217), Expect = 4e-20
Identities = 35/240 (14%), Positives = 72/240 (30%), Gaps = 44/240 (18%)
Query: 41 IGEPQAAQAYLNVEFPAKVTFT--PTVQYL----PFRLQGVVQCHIKANPTFQYVTWTKD 94
+G + + P T P + + +L C +P QY W K
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLC----CRATGHPFVQY-QWFKM 55
Query: 95 KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS------------- 141
+ + T L+F V+ G Y C N + S
Sbjct: 56 NKEIPNGNT--------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF 107
Query: 142 -GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN 200
++ + ++P + + G ++ + C A G+ P W ++ + L
Sbjct: 108 QRSVDGVSESKLQICVEPTSQ-KLMPGSTLVLQCVAV---GSPIPHYQW-FKNELPLTHE 162
Query: 201 RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEGTQ-PHAPYNITGVATE 258
+ + G Y C V N+ + + +++++ P N +
Sbjct: 163 T----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218
Score = 75.7 bits (186), Expect = 6e-16
Identities = 37/236 (15%), Positives = 69/236 (29%), Gaps = 42/236 (17%)
Query: 139 GSSGQME----VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
GSS LV + T+ PE+ G+ V + C A G W +
Sbjct: 2 GSSHHHHHHSSGLVPRGSKITVNPESK-AVLAGQFVKLCCRA---TGHPFVQYQW-FKMN 56
Query: 195 VALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEGTQPHAPYNIT 253
+P + + D G+Y C V+N +QL V ++
Sbjct: 57 KEIPNGN----TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112
Query: 254 GVATEF----------------SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297
GV+ ++ L+ + G P W++ + +P+T
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCVA--VGSPIPH---YQWFKNE-------LPLT 160
Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTE 353
+ + + N+ + ++ + G P N T
Sbjct: 161 HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 89.0 bits (221), Expect = 1e-21
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 26/136 (19%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
G S + + P PR+V V++ FV +SW+PP E IQ + +
Sbjct: 1 GSSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTV------- 53
Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
+ +G+ + T PGS Q+T+ L P Y F+VV N
Sbjct: 54 ------------------FFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYN 95
Query: 445 ELGDGMLSNIVVVKTK 460
E G G S + V T+
Sbjct: 96 EWGPGESSQPIKVATQ 111
Score = 80.9 bits (200), Expect = 8e-19
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P AP ++ V + V L W P ++ Q + +++ +G+ + T PGS Q+
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKGNI-QTFTVFFSREGDNRERALNTTQPGSLQL 76
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
T+ L P Y F+VV NE G G S + V T+
Sbjct: 77 TVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGPSS 118
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 93.2 bits (231), Expect = 2e-21
Identities = 36/240 (15%), Positives = 67/240 (27%), Gaps = 28/240 (11%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-AKVTFTPTVQYLPF--RLQ 73
L + + D+G Y C ++ G + L + P V F P F +
Sbjct: 50 SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTE 109
Query: 74 G---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
+ C + +P VT + K + V + F+ + Y C
Sbjct: 110 ITEITIPCRV-TDPQLV-VTLHEKKG------DVALPVPYDHQRGFSGIF--EDRSYICK 159
Query: 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
S ++ + GE++ + C G + W
Sbjct: 160 TTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMC---IVIGNEVVNFEWT 216
Query: 191 --RRDGVALPKNRVKIVGGN-------ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
R++ L + + + I D G Y C V+ V + +
Sbjct: 217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 70.5 bits (172), Expect = 1e-13
Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 15/178 (8%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
V W + + K + L T + G Y CT ++ G + + +
Sbjct: 28 VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIF 87
Query: 149 RKPPAFTIKPEAMYQRKV----GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI 204
P P + + + + C + + +T + G +
Sbjct: 88 VPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQ----LVVTLHEKKG-----DVALP 138
Query: 205 VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVT 262
V + + Y C + + A V + N++ A + V
Sbjct: 139 VPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVY--RLQVSSINVSVNAVQTVVR 194
Score = 65.9 bits (160), Expect = 3e-12
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 11/137 (8%)
Query: 25 VGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG---VVQCHIK 81
G + Y+C+ + G E + Y+ + + + R QG + C +
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVR-QGENITLMCIVI 206
Query: 82 ANPTFQYVTWTKD----KRLLEPYQ--TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
N WT RL+EP D+ L G YTC +
Sbjct: 207 GNEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESV 265
Query: 136 GTQGSSGQMEVLVRKPP 152
+ + V +
Sbjct: 266 NDHQDEKAINITVVESG 282
Score = 41.6 bits (97), Expect = 3e-04
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ L I +DSG Y C V+ + + Q + +N+
Sbjct: 234 LDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ-DEKAINI 276
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 90.5 bits (224), Expect = 4e-21
Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 16/200 (8%)
Query: 52 NVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ--------T 103
P K T +P P ++ ++ + ++ DK Y T
Sbjct: 17 TAYLPCKFTLSPE-DQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFT 75
Query: 104 KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQ 163
+ V + S+ T + + G Y C A G + VLV P+ T +
Sbjct: 76 SNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV--KPSGTRCFVDGSE 133
Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGY 221
+G + CE EG+ WQ+ I+++ G
Sbjct: 134 E-IGNDFKLKCEP--KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGT 190
Query: 222 YECVVSNEVATIVQAAQLVV 241
Y C V N V + +L V
Sbjct: 191 YSCTVQNRVGSDQCMLRLDV 210
Score = 77.0 bits (189), Expect = 2e-16
Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 7/148 (4%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
+ V D ++ + + D G Y C+V G + L V T
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK-KFLLTVLVKPSGTRCFVDG 131
Query: 67 YLPFRLQGVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG 125
++C K + Q+ W K T + M + + + + G
Sbjct: 132 SEEIGNDFKLKCEPKEGSLPLQF-EWQKLSDSQTM-PTPWLAEMTSPVISVKNASSEYSG 189
Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPA 153
Y+CT N G+ +++V+ PP+
Sbjct: 190 TYSCTVQNRVGSDQCMLRLDVV---PPS 214
Score = 49.3 bits (117), Expect = 5e-07
Identities = 32/204 (15%), Positives = 57/204 (27%), Gaps = 35/204 (17%)
Query: 154 FTIK-PEAMYQRKVGESVDMHCEAQ-EAEGTQKPTITWQRRDG----------------- 194
+I PE ++ GE+ + C+ E I W
Sbjct: 1 LSITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKI 60
Query: 195 -----------VALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
V N VK +I + L+ D G Y+C V + L V
Sbjct: 61 YDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV 120
Query: 244 TQPHAPYNITGVATE-FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ G L+ P G L+ W + ++ + S
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEP-KEGSLPLQ---FEWQKLSDSQTMPTPWLAEMTSP 176
Query: 303 QITINRLTPATTYEFQVVGKNELG 326
I++ + + + +N +G
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVG 200
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 89.0 bits (221), Expect = 6e-21
Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 41/216 (18%)
Query: 243 GTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
GT P ++ TE +++L W Y + Y K P S
Sbjct: 4 GTDLDNPKDLEVSDPTETTLSLRWRRP----VAKFDRYRLTYVSPSGKKN--EMEIPVDS 57
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVI 360
T + L T Y +V + S +K G P+ +S +++ N +
Sbjct: 58 TSFILRGLDAGTEYTISLVAEKGRHK---SKPTTIKGSTV-VGSPKGISFSDITENSATV 113
Query: 361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420
SW PP S + Y + Y +
Sbjct: 114 SWTPP---RSRVDSYRVSYVPITG--------------------------GTPNVVTVDG 144
Query: 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
T+ + +L P Y ++ + + ++
Sbjct: 145 SKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGIL 180
Score = 53.2 bits (128), Expect = 2e-08
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 31/113 (27%)
Query: 338 TKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396
G P+++ V++ + W+ P + Y + Y + K +
Sbjct: 2 NAGTDLDNPKDLEVSDPTETTLSLRWRRP---VAKFDRYRLTYVSPSGKKNEME------ 52
Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
P ST + L T Y +V +
Sbjct: 53 ---------------------IPVDSTSFILRGLDAGTEYTISLVAEKGRHKS 84
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 90.8 bits (225), Expect = 6e-21
Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 26/188 (13%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNGSLLFTRVNQNHQGRYTCTPYNA 134
+C NPT ++W K+ R + + Q SL+ V + +G YTC N
Sbjct: 36 RCPAAGNPTPS-ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 94
Query: 135 HGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
G+ + ++VL R +P P +G V+ HC+ +P I W +
Sbjct: 95 FGSIRQTYTLDVLERSPHRPILQAGLPANQ-TAVLGSDVEFHCKVY---SDAQPHIQWLK 150
Query: 192 R---DGVALPKNRVKIV-------------GGNITIEGLRRVDFGYYECVVSNEVATIVQ 235
+G + + V + + + D G Y C +N + +
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK 210
Query: 236 AAQLVVEG 243
A L V G
Sbjct: 211 AFWLSVHG 218
Score = 83.8 bits (207), Expect = 2e-18
Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 31/190 (16%)
Query: 8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
+ + + +LV+ V D G Y C V N G + L+V + P +Q
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR-QTYTLDVL--ERSPHRPILQA 118
Query: 68 LPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKD-------------IV 107
Q V C + ++ + W K + D
Sbjct: 119 GLPANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISES 177
Query: 108 VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVG 167
V + L V++ G Y C N G + + V P A + +
Sbjct: 178 VEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG--PRAAEEELV-----EAD 230
Query: 168 ESVDMHCEAQ 177
E+ +H
Sbjct: 231 EAGSVHHHHH 240
Score = 69.2 bits (169), Expect = 1e-13
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 151 PPAFTIKPEAMYQR----KVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV 205
P +T +PE M ++ +V C A G P+I+W + +G ++R+ +
Sbjct: 11 APYWT-RPERMDKKLLAVPAANTVRFRCPA---AGNPTPSISWLK-NGREFRGEHRIGGI 65
Query: 206 -----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFS 260
++ +E + D G Y CVV N+ +I Q L V PH P G+ +
Sbjct: 66 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQT 125
Query: 261 VTL 263
L
Sbjct: 126 AVL 128
Score = 46.9 bits (111), Expect = 5e-06
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 4 KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
V ++ D L + V D G Y+C +N IG + A +L+V P
Sbjct: 168 TVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA-FWLSVHGPR----AA 222
Query: 64 TVQYLPFRLQGVVQCH 79
+ + G V H
Sbjct: 223 EEELVEADEAGSVHHH 238
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 85.1 bits (211), Expect = 4e-20
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 26/139 (18%)
Query: 323 NELGDGMLSN-IVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYR 380
+GDG S+ ++ +T PGPP + EV V + WQPP +I Y I +R
Sbjct: 7 GRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHR 66
Query: 381 TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
+ + + + V P + Q T L P + Y F++
Sbjct: 67 LNTT------------------------TANTATVEVLAPSARQYTATGLKPESVYLFRI 102
Query: 441 VGKNELGDGMLSNIVVVKT 459
+ G G + +VV T
Sbjct: 103 TAQTRKGWGEAAEALVVTT 121
Score = 64.7 bits (158), Expect = 5e-13
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKD-WLPIPVTPPGST 302
P P I SV L W P G Y I +R + V P +
Sbjct: 28 PGPPMGILFPEVRTTSVRLIWQPPAAPNGI--ILAYQITHRLNTTTANTATVEVLAPSAR 85
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
Q T L P + Y F++ + G G + +VV T+ GP
Sbjct: 86 QYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR-SGPS 128
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 83.7 bits (207), Expect = 6e-20
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN 208
KP T++ + + G V C A+ + T+ W R LP +R G
Sbjct: 7 SKPIMVTVEEQRSQSVRPGADVTFICTAKS--KSPAYTLVWTRLHNGKLP-SRAMDFNGI 63
Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+TI ++ D G Y C SN A A L V+
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 44.0 bits (104), Expect = 6e-06
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
G L +R + +G L I V D+G Y+C SN Q A L+V+
Sbjct: 51 GKLPSRAMDF-NGILTIRNVQPSDAGTYVCTGSNMFAMDQ-GTATLHVQ 97
Score = 40.6 bits (95), Expect = 8e-05
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
+ WT+ P + + NG L V + G Y CT N + + V V
Sbjct: 43 LVWTRLHNGKLPSRA----MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 88.7 bits (220), Expect = 7e-20
Identities = 33/221 (14%), Positives = 57/221 (25%), Gaps = 38/221 (17%)
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI---PVTPPGST 302
H ++ + + +EW + + Y++ + +K
Sbjct: 102 THPVMDLKAFPKDNMLWVEWTTP----RESVKKYILEWCVLSDKAPCITDWQQEDGTVHR 157
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
L + Y V G G +I K P V +V N V+
Sbjct: 158 TYLRGNLAESKCYLITVTPVYADGPGSPESI-KAYLKQAPPSKGPTVRTKKVGKNEAVLE 216
Query: 362 WQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
W + I+ Y I YRT + V
Sbjct: 217 WDQLPVDVQNGFIRNYTIFYRTIIGN--------------------------ETAVNVDS 250
Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
T+ T++ LT T Y ++ + G K
Sbjct: 251 S-HTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTPK 290
Score = 88.3 bits (219), Expect = 8e-20
Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 36/200 (18%)
Query: 260 SVTLEWLPG---YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316
+V L W + G L +Y + + V +T++T+N Y
Sbjct: 24 TVQLVWKTLPPFEANGKIL--DYEVTLTRWKS-HLQNYTVN---ATKLTVN--LTNDRYL 75
Query: 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYL 376
+ +N +G + + + P ++ +N + W P ++ Y+
Sbjct: 76 ATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTP---RESVKKYI 132
Query: 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 436
+++ + DW T L + Y
Sbjct: 133 LEWCVLSD--------------------KAPCITDWQQEDGT--VHRTYLRGNLAESKCY 170
Query: 437 EFQVVGKNELGDGMLSNIVV 456
V G G +I
Sbjct: 171 LITVTPVYADGPGSPESIKA 190
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 83.9 bits (208), Expect = 7e-20
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 29/136 (21%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
G S V + + PGP N+ + + ++W+ P+ IQ Y +
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKL------- 53
Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
Y E+G + V+ S TIN L T Y F+VV N
Sbjct: 54 ------------------YYMEKGTDKEQDVDVS---SHSYTINGLKKYTEYSFRVVAYN 92
Query: 445 ELGDGMLSNIVVVKTK 460
+ G G+ + V V+T
Sbjct: 93 KHGPGVSTPDVAVRTL 108
Score = 76.6 bits (189), Expect = 3e-17
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P N+ A + S+T+ W SG ++ QNY ++Y E+G + V+ S
Sbjct: 18 PGPAPNLRAYAASPTSITVTWETPVSGNGEI-QNYKLYYMEKGTDKEQDVDVS---SHSY 73
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
TIN L T Y F+VV N+ G G+ + V V+T GP
Sbjct: 74 TINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD-SGPS 114
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 87.3 bits (215), Expect = 3e-19
Identities = 32/215 (14%), Positives = 71/215 (33%), Gaps = 22/215 (10%)
Query: 233 IVQAAQLVVEGTQPHAPYNITGVATEF-SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW 291
+V+ EG A + + + WLPG + PD NY ++Y + +
Sbjct: 85 LVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDT--NYTLYYWHRSLEKI 142
Query: 292 LPIPVTPPGST------QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP 345
+T + + + Q++ K+ G S +V T KP P
Sbjct: 143 HQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDP 202
Query: 346 PRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
P +++ N+ + W+ P S +Y ++ + ++ Y
Sbjct: 203 PHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQT-------------ETHNVFYV 249
Query: 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
++ + ++ + + P T ++
Sbjct: 250 QEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284
Score = 54.5 bits (130), Expect = 3e-08
Identities = 30/220 (13%), Positives = 52/220 (23%), Gaps = 31/220 (14%)
Query: 244 TQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
TQP N++ V +V W P N +WY +
Sbjct: 3 TQPP-VTNLSVSVENLCTVIWTWNPP----EGASSNCSLWYFSHFGDKQDKKIAPETRRS 57
Query: 303 QITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFV 359
L + + +L + +G + N +
Sbjct: 58 IEVP--LNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMK 115
Query: 360 ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
SW P S Y + Y E+ +G +T
Sbjct: 116 CSWLPG-RNTSPDTNYTLYYWHRSL-----------EKIHQCENIFREGQYFGCSFDLTK 163
Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+ + Q++ K+ G S +V T
Sbjct: 164 VKDSSF--------EQHSVQIMVKDNAGKIKPSFNIVPLT 195
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 87.5 bits (216), Expect = 4e-19
Identities = 42/307 (13%), Positives = 82/307 (26%), Gaps = 51/307 (16%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
+ + + L+I + +DS Y+CEV + E Q L +
Sbjct: 56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL------- 108
Query: 67 YLPFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
LQG + + V + + +L +++
Sbjct: 109 -----LQGQSLTLTLESPPGSSPS-VQCRSPRGK---------NIQGGKTLSVSQLELQD 153
Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK-----------PEAMYQRKVGESVDM 172
G +TCT + VL + + + P A K+ S ++
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213
Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG----------GNITIEGLRRVDFGYY 222
+A E + K IT+ ++ K + + + G
Sbjct: 214 WWQA-ERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL 272
Query: 223 ECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF---SVTLEWLPGYSGGPDLKQNY 279
+ + + Q LVV N+T + L K+
Sbjct: 273 TLALEAKTGKLHQEVNLVVM-RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331
Query: 280 VIWYREQ 286
+W
Sbjct: 332 AVWVLNP 338
Score = 77.9 bits (191), Expect = 7e-16
Identities = 26/239 (10%), Positives = 60/239 (25%), Gaps = 49/239 (20%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--------------PAK 58
I+ TL ++ + DSG + C V + + + + V +
Sbjct: 137 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVLAFQKASSIVYKKEGEQVE 195
Query: 59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYV---TWTKDKRLLEPYQTKDIVVMQNG--- 112
+F G + + + + + ++ + M
Sbjct: 196 FSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPL 255
Query: 113 --SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
+L G T G + V+ R
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM----------------RATQLQK 299
Query: 171 DMHCEAQEAEGTQKPTITWQ-RRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
++ CE G P + + + V + + G ++C++S+
Sbjct: 300 NLTCEVW---GPTSPKLMLSLKLENKEAK------VSKREKAVWVLNPEAGMWQCLLSD 349
Score = 45.9 bits (108), Expect = 2e-05
Identities = 39/316 (12%), Positives = 85/316 (26%), Gaps = 50/316 (15%)
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV------------------- 205
K G++V++ C A + W+ + + + N+ +
Sbjct: 7 KKGDTVELTC---TASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 206 --GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
+ I+ L+ D Y C V ++ + LV T + + G S+TL
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEV---QLLVFGLTANSDTHLLQGQ----SLTL 116
Query: 264 EWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 323
G V +G G +++++L + +
Sbjct: 117 TLE--SPPGSSPS---VQCRSPRGKN--------IQGGKTLSVSQLELQDSGTWTCTVLQ 163
Query: 324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDG 383
+VV V E S+ L + ++ +
Sbjct: 164 NQKKVEFKIDIVVLAFQK---ASSIVYKKE-GEQVEFSFPLAFTVEKLTGSGELWWQAER 219
Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
+ + + + + Q K L + P + A + + +
Sbjct: 220 ASSSKSWITFDLKNKEVSVKRVTQDPK--LQMGKKLPLHLTLPQALPQYAGSGNLTLALE 277
Query: 444 NELGDGMLSNIVVVKT 459
+ G +VV
Sbjct: 278 AKTGKLHQEVNLVVMR 293
Score = 40.9 bits (95), Expect = 6e-04
Identities = 14/123 (11%), Positives = 25/123 (20%), Gaps = 23/123 (18%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC 78
TL SG + G+ + L V L L V
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQ-EVNLVV---------MRATQLQKNLTCEVWG 307
Query: 79 HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138
+ + + + + V G + C ++
Sbjct: 308 PTSPKLML---SLKLENKEAK----------VSKREKAVWVLNPEAGMWQCLLSDSGQVL 354
Query: 139 GSS 141
S
Sbjct: 355 LES 357
Score = 28.2 bits (62), Expect = 5.7
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 14 IKKDGTLVINPVGSDDSGLYMCEVSNG 40
K V + ++G++ C +S+
Sbjct: 324 AKVSKREKAVWVLNPEAGMWQCLLSDS 350
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 84.5 bits (208), Expect = 5e-19
Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 42/224 (18%)
Query: 246 PHAPYNITGVA--TEFSVTLEWLPGYSGGPDLKQNYVIWY---REQGNKDWLPIPVTPPG 300
P +P N++ + T S+ +W PG ++++ R IP
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLP--TSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 301 ----STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNN 356
+ I L V +N LG + + K PP ++ +
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 357 G-------FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGN 409
+SW+P + Q ++Y+ +
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQECELRYQP------------------------QLKG 158
Query: 410 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
+W + P Q + L A Y Q+ G S
Sbjct: 159 ANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP 202
Score = 46.7 bits (110), Expect = 4e-06
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 240 VVEGTQPHAPYNITGVATE-------FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL 292
++ + P + L W P ++ + + + +W
Sbjct: 103 PMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWT 162
Query: 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 332
+ P Q + L A Y Q+ G S
Sbjct: 163 LVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP 202
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 89.2 bits (220), Expect = 6e-19
Identities = 30/222 (13%), Positives = 54/222 (24%), Gaps = 31/222 (13%)
Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
+Q + F L + +++ N++ P
Sbjct: 690 SQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVN-KES 748
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLS---NIVVVKTK--GPKPGPPRNVSVTEVNNGF 358
+ I+ L T Y ++ N+ V +T V+ N
Sbjct: 749 LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNV 808
Query: 359 V-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417
V + WQ P E LI Y + YR G
Sbjct: 809 VHLMWQEPKEPNGLIVLYEVSYRRYG-----------------------DEELHLCDTRK 845
Query: 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+ L+P Y ++ + G+G +
Sbjct: 846 HFALERGCRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYV 886
Score = 78.4 bits (192), Expect = 2e-15
Identities = 33/284 (11%), Positives = 78/284 (27%), Gaps = 41/284 (14%)
Query: 198 PKNRVKIVGGNITIEGLRRVDFGYYECVV-------SNEVATIVQAAQLVVEGTQPHAPY 250
K+ + I G + ++ + E I +
Sbjct: 415 SKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLK 474
Query: 251 NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ--------------GNKDWLPIPV 296
+ + L W P + ++++Y+E G+ W + +
Sbjct: 475 FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDI 534
Query: 297 TPPG---------STQITINRLTPATTYEFQV-----VGKNELGDGMLSNIVVVKTKGPK 342
PP + L P T Y V G S+I+ V+T
Sbjct: 535 DPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATN 594
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYR-----TDGSWKTLNKGQIRPE 396
P P + + + ++ W+PP + I +YL+ + ++ ++
Sbjct: 595 PSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLP 654
Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
++ + + ++ + + E +
Sbjct: 655 SRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEE 698
Score = 53.8 bits (128), Expect = 9e-08
Identities = 32/179 (17%), Positives = 54/179 (30%), Gaps = 21/179 (11%)
Query: 186 TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVS--NEVATIVQ--AAQLVV 241
+ + ++ I GLR F Y + N+ + A V
Sbjct: 726 GDVGNAGNNEEHRPFEKVVNKESLVISGLRH--FTGYRIELQACNQDTPEERCSVAAYVS 783
Query: 242 EGTQPHA-----PYNITGVATEF-SVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPI 294
T P A +T E V L W P G + Y + YR G+ + L +
Sbjct: 784 ARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIV--LYEVSYRRYGD-EELHL 840
Query: 295 PVT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVS 350
T + L+P Y ++ + G+G + P N++
Sbjct: 841 CDTRKHFALERGCRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYV-TDYLDVPSNIA 897
Score = 47.2 bits (111), Expect = 1e-05
Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 18/213 (8%)
Query: 263 LEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-----PPGSTQITINRLTPATTYEF 317
L G NY + + N L G N +
Sbjct: 382 FRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHK 441
Query: 318 QVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN---NGFVISWQPPLE-RASLIQ 373
G ++I + + + + + ++ W+P +
Sbjct: 442 MEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLL 501
Query: 374 YYLIKYRTDGSW-KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP 432
+++ Y+ T GQ NS+ + + P + L P
Sbjct: 502 GFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN---HPGWLMRGLKP 558
Query: 433 ATTYEFQV-----VGKNELGDGMLSNIVVVKTK 460
T Y V G S+I+ V+T
Sbjct: 559 WTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD 591
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 83.9 bits (207), Expect = 6e-19
Identities = 22/128 (17%), Positives = 34/128 (26%), Gaps = 14/128 (10%)
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
L+ T N +H G Y C + Q + V KP ++ E +
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETE--VTKQEHLSVVKPLTLSVHSERSQ-FPDFSVL 122
Query: 171 DMHCEAQEAEGTQKPTITWQRRDGV----ALPKNRVKIVGGN----ITIEGLRRVDFGYY 222
+ C P + W +GV V L +
Sbjct: 123 TVTC---TVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179
Query: 223 ECVVSNEV 230
CV N+
Sbjct: 180 TCVGKNDK 187
Score = 74.7 bits (183), Expect = 9e-16
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 7/125 (5%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
LV+ G Y+C + G E Q +L+V P ++ P V
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124
Query: 77 QCHIKANPTFQYVTWTKDKRLL--EPYQTKDIVVMQNGSL---LFTRVNQNHQGRYTCTP 131
C + A P V W + + ++ ++GSL + + + TC
Sbjct: 125 TCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183
Query: 132 YNAHG 136
N
Sbjct: 184 KNDKE 188
Score = 46.6 bits (110), Expect = 4e-06
Identities = 26/197 (13%), Positives = 47/197 (23%), Gaps = 49/197 (24%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG------------------- 206
+GE V + + + ++W + P ++G
Sbjct: 5 LGERVTLTSYWRRVSLGPEIEVSWFKLG----PGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 207 ------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG--TQPHAPYNITGVATE 258
+ + G Y C + + + L V T
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFS 120
Query: 259 FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP--------VTPPGSTQI-TINRL 309
+T+ + P +V W +G P P GS + L
Sbjct: 121 -VLTVTCT--VNAFP---HPHVQWLMPEGV---EPAPTAANGGVMKEKDGSLSVAVDLSL 171
Query: 310 TPATTYEFQVVGKNELG 326
VGKN+
Sbjct: 172 PKPWHLPVTCVGKNDKE 188
Score = 38.1 bits (88), Expect = 0.003
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 11 RVVIKKDGTLVI---NPVGSDDSGLYMCEVSNGIGEPQA 46
V+ +KDG+L + + C N E
Sbjct: 154 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 80.5 bits (199), Expect = 1e-18
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 27/135 (20%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
G S + P P + + + + +SWQ P +Q Y +
Sbjct: 1 GSSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEP-RCERPLQGYSV------- 52
Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
EY+ + + + P T + + L P +Y F+V ++
Sbjct: 53 ------------------EYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQS 94
Query: 445 ELGDGMLSNIVVVKT 459
+ G G V+
Sbjct: 95 QEGWGREREGVITIE 109
Score = 69.7 bits (171), Expect = 7e-15
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P P + A S+ + W P Q Y + Y+ + + + P T +
Sbjct: 18 PDTPTRLVFSALGPTSLRVSWQEPRCERPL--QGYSVEYQLLNGGELHRLNIPNPAQTSV 75
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ L P +Y F+V +++ G G V+ + GP
Sbjct: 76 VVEDLLPNHSYVFRVRAQSQEGWGREREGVIT-IESQVSGPS 116
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 83.0 bits (205), Expect = 1e-18
Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 40/207 (19%)
Query: 69 PFRLQGVVQ-----CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVN 120
++Q + + V W+ + + + + G L
Sbjct: 10 DLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--SDRVKTGVTGEQIWLQINEPT 67
Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLV-------------------RKPPAFTIKPEAM 161
N +G+Y ++ + + + P+ +
Sbjct: 68 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 127
Query: 162 YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV-----GGNITIEGLR 215
+ G+++++ C G P ++W + + AL + + TI G+
Sbjct: 128 T-IQEGKALNLTCNVW---GDPPPEVSWLK-NEKALAQTDHCNLKFEAGRTAYFTINGVS 182
Query: 216 RVDFGYYECVVSNEVATIVQAAQLVVE 242
D G Y VV N+ + + V
Sbjct: 183 TADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 74.1 bits (182), Expect = 2e-15
Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 28/164 (17%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
RV G L IN +D G Y+ E+ +G Q L+ + +
Sbjct: 49 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEAYAEFQRLK 107
Query: 68 LPFRLQGVV---------------------QCHIKANPTFQYVTWTKDKRLLEPYQTKDI 106
+ C++ +P + V+W K+++ L ++
Sbjct: 108 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALAQTDHCNL 166
Query: 107 VVMQNG--SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
V+ G+Y N +G++ S + V +
Sbjct: 167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210
Score = 45.2 bits (107), Expect = 1e-05
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 8/86 (9%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGN----ITIEGLRRVDFG 220
E + ++ + + W +G A+ +RVK + I D G
Sbjct: 16 TAEGIQLYSFV--TYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKG 72
Query: 221 YYECVVSNEVATIVQAAQLVVEGTQP 246
Y + + + L +
Sbjct: 73 KYVMELFDGKTGHQKTVDLSGQAYDE 98
Score = 44.1 bits (104), Expect = 3e-05
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
+ + IN V + DSG Y V N G + + ++V P
Sbjct: 167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFIP 211
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 80.0 bits (197), Expect = 1e-18
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 27/122 (22%)
Query: 340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTD-GSWKTLNKGQIRPEEN 398
PPR + G ++ W PP + Y+++ R W+ L+
Sbjct: 5 SSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPA------- 57
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
T++ + L YEF++V SN V
Sbjct: 58 -------------------VAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVS 98
Query: 459 TK 460
T
Sbjct: 99 TS 100
Score = 71.5 bits (175), Expect = 2e-15
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI-PVTPPGSTQI 304
P + V T V L W P L YV+ R+ G++ W + P T++
Sbjct: 8 LSPPRGLVAVRTPRGVLLHWDPPELVPKRL-DGYVLEGRQ-GSQGWEVLDPAVAGTETEL 65
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
+ L YEF++V SN V T G
Sbjct: 66 LVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 82.7 bits (204), Expect = 2e-18
Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 31/193 (16%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP 131
K + + V + +++ + + + +N + ++ +G YT
Sbjct: 22 FWMQAEKLSGNAK-VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 80
Query: 132 YNAHGTQGSSGQM-----------------EVLVRKPPAFTIKPEAMYQRKVGESVDMHC 174
+ T S+ + E + ++ P F +V + C
Sbjct: 81 QDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV--TGECNVLLKC 138
Query: 175 EAQEAEGTQKPT-ITWQRRDGVAL-PKNRVKIVGGNIT--IEGLRRVDFGYYECVVSNEV 230
+ +K T I W +D + + G T I + D G YE ++ ++
Sbjct: 139 KV---ANIKKETHIVW-YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 194
Query: 231 ATIVQAAQLVVEG 243
+LV E
Sbjct: 195 GKDKSRLKLVDEA 207
Score = 65.3 bits (159), Expect = 2e-12
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 18/142 (12%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG---- 74
+ + + +D G Y ++ +G + + F + R QG
Sbjct: 62 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 75 -------------VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ 121
+++C + ++ W KD+R + K +LL T ++
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV-DEKHDFKDGICTLLITEFSK 180
Query: 122 NHQGRYTCTPYNAHGTQGSSGQ 143
G Y + G S +
Sbjct: 181 KDAGIYEVILKDDRGKDKSRLK 202
Score = 49.2 bits (117), Expect = 6e-07
Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 40/204 (19%)
Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL---PKNRVKIVGGN 208
FT A+ + V +A + + + + + + PK ++ I
Sbjct: 3 DPFTKSELAVEILE-KGQVRFWMQA--EKLSGNAKVNYI-FNEKEIFEGPKYKMHIDRNT 58
Query: 209 ----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG-------TQPHAPYNITGVAT 257
+ +E L+ D G Y + + AT LV + + I
Sbjct: 59 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118
Query: 258 EFSVTLEW--LPGYS--------GGPDLKQNYVIWYREQGNKDWLPIPVTPP-----GST 302
F L W + K+ +++WY KD I V G
Sbjct: 119 HFVEYLSWEVTGECNVLLKCKVANIK--KETHIVWY-----KDEREISVDEKHDFKDGIC 171
Query: 303 QITINRLTPATTYEFQVVGKNELG 326
+ I + ++V+ K++ G
Sbjct: 172 TLLITEFSKKDAGIYEVILKDDRG 195
Score = 38.8 bits (90), Expect = 0.001
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
E TL+I D+G+Y + + G+ ++ L E
Sbjct: 162 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDE 206
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 84.4 bits (207), Expect = 3e-18
Identities = 47/333 (14%), Positives = 89/333 (26%), Gaps = 67/333 (20%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNI 209
K + ++ + Y GE V + C+ E ITW D + V G +
Sbjct: 5 KKDVYVVELD-WYPDAPGEMVVLTCDTPEE-----DGITW-TLDQ----SSEVLGSGKTL 53
Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE-----------GTQPHAPYNITGVATE 258
TI+ D G Y C EV + E +P + A
Sbjct: 54 TIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKN 113
Query: 259 FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQ 318
+S + DL + + T ++ + + E Q
Sbjct: 114 YSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAE-RVRGDNKEYEYSVECQ 172
Query: 319 VVGKNELGDGMLSNIVVVKTKGP----------------KPGPPRNVSVTEVNNGF--VI 360
+ L V+V KP PP+N+ + + N +
Sbjct: 173 EDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEV 232
Query: 361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420
SW+ P ++ Y+ + + ++ + + ++
Sbjct: 233 SWEYPDTWSTPHSYFSLTF------------CVQ---------VQGKSKREK-----KDR 266
Query: 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
T T + V ++ S
Sbjct: 267 VFTDKTSATVICRKNASISVRAQDRYYSSSWSE 299
Score = 46.6 bits (109), Expect = 9e-06
Identities = 40/297 (13%), Positives = 76/297 (25%), Gaps = 61/297 (20%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
V+ C +TWT D+ V+ +L G+YTC
Sbjct: 25 VLTCDTPEEDG---ITWTLDQS--------SEVLGSGKTLTIQVKEFGDAGQYTCH---- 69
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
G + S + +L +K Q++ + CEA+ G T W
Sbjct: 70 KGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRF--TCWWLTTIS 127
Query: 195 VALPKNRVKIVG--------------GNITIEGLRRVDFGYYECVVSNE---------VA 231
L + G + G + EC + +
Sbjct: 128 TDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIE 187
Query: 232 TIVQAAQL-----------VVEGTQPHAPYNITGVATEFS--VTLEWLPGYSGGPD---L 275
+V A + + +P P N+ + S V + W +
Sbjct: 188 VMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYF 247
Query: 276 KQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 332
+ + + + ++ T T + V ++ S
Sbjct: 248 SLTFCVQVQGKSKREK-----KDRVFTDKTSATVICRKNASISVRAQDRYYSSSWSE 299
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 81.7 bits (201), Expect = 4e-18
Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 37/206 (17%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYRE----------QGNKDWLPIPVTPPGSTQITINRL 309
+T W + ++R + + G + +
Sbjct: 17 KMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPI 76
Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG--FVISWQPPLE 367
+ Y + + LG V+ KP PP +V N ISW+ P+
Sbjct: 77 FLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVF 136
Query: 368 RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITI 427
+ +Q+ I+Y G W V S +++
Sbjct: 137 PENNLQFQ-IRYGLSGK------------------------EVQWKMYEVYDAKSKSVSL 171
Query: 428 NRLTPATTYEFQVVGKNELGDGMLSN 453
Y QV K G G SN
Sbjct: 172 PVPDLCAVYAVQVRCKRLDGLGYWSN 197
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 80.6 bits (199), Expect = 5e-18
Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL---PFRLQG 74
++DSG Y C+ +L V F V TP +++ L+
Sbjct: 51 QPSYRFKANNNDSGEYTCQTGQTSLS---DPVHLTVLFEWLVLQTPHLEFQEGETIMLR- 106
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
CH + VT+ ++ + + + + + N +H G Y CT
Sbjct: 107 ---CHSWKDKPLVKVTFFQNGKSQKFSHL-------DPTFSIPQANHSHSGDYHCTGNIG 156
Query: 135 HGTQGSSGQMEVLVR 149
+ SS + + V+
Sbjct: 157 YTLF-SSKPVTITVQ 170
Score = 67.2 bits (164), Expect = 2e-13
Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 21/152 (13%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C +P + W + L+ + N N G YTC
Sbjct: 25 TCQGARSPESDSIQWFHNGNLIPT---------HTQPSYRFKANNNDSGEYTCQTGQTSL 75
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
S + + V P +Q GE++ + C + + +T+ ++G +
Sbjct: 76 ----SDPVHLTVLFEWLVLQTPHLEFQ--EGETIMLRCHSW--KDKPLVKVTF-FQNGKS 126
Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
+ + +I G Y C +
Sbjct: 127 QKFSH---LDPTFSIPQANHSHSGDYHCTGNI 155
Score = 39.8 bits (93), Expect = 5e-04
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
D T I SG Y C + G + + V
Sbjct: 132 LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 81.3 bits (200), Expect = 6e-18
Identities = 44/211 (20%), Positives = 64/211 (30%), Gaps = 34/211 (16%)
Query: 246 PHAPYNITGVATEF-SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP---VTPPGS 301
P P + + T W PG GG L NY + Y +G P P S
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGG--LPTNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG---- 357
+ TY V N++G + V T +P PP ++V
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 358 -FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
I W PP ++ + Y +IR + + +W
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLY------------EIR---------LKPEKAAEW--EI 158
Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELG 447
T+ I L P Y QV K + G
Sbjct: 159 HFAGQQTEFKILSLHPGQKYLVQVRCKPDHG 189
Score = 31.6 bits (71), Expect = 0.38
Identities = 19/115 (16%), Positives = 28/115 (24%), Gaps = 24/115 (20%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
PG P N F W+P + L Y + Y +G
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTD-GGLPTNYSLTYHREGETLM-------------- 48
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
+ P S + TY V N++G + V
Sbjct: 49 --------HECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYV 95
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 80.7 bits (199), Expect = 8e-18
Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 18/141 (12%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG- 74
+ + I+ DDSG Y C+ + L V + P +
Sbjct: 52 QASSYFIDAATVDDSGEYRCQTQLS---TLSDPVQLEVHIGWLLLQAPRWVFKE----ED 104
Query: 75 --VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132
++CH N VT+ ++ + + + N + G Y C
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKGRKYFH-------HNSDFYIPKATLKDSGSYFCRGL 157
Query: 133 NAHGTQGSSGQMEVLVRKPPA 153
S +++ + + A
Sbjct: 158 VGSKNVSSE-TVQITITQGLA 177
Score = 64.1 bits (156), Expect = 4e-12
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 21/153 (13%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C +P Q W ++ L+ Q S + G Y C
Sbjct: 28 KCQGAYSPEDQSTQWFHNESLISS---------QASSYFIDAATVDDSGEYRC---QTQL 75
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
+ S +++ V P +++ + + + C + + T +T+ ++G
Sbjct: 76 STLSD-PVQLEVHIGWLLLQAPRWVFK--EEDPIHLRCHSW--KNTALHKVTY-LQNGKG 129
Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
+ I D G Y C
Sbjct: 130 RKYFH---HNSDFYIPKATLKDSGSYFCRGLVG 159
Score = 37.6 bits (87), Expect = 0.004
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
+ I DSG Y C G + + + V+ +
Sbjct: 135 HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSFF 185
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 80.9 bits (199), Expect = 2e-17
Identities = 29/219 (13%), Positives = 56/219 (25%), Gaps = 28/219 (12%)
Query: 28 DDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQ 87
+ + C V G + Q + + T + + V+C +A+P
Sbjct: 71 EGTQRLTCAVILG-NQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC--EAHPR-- 125
Query: 88 YVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147
T + +P + LL +++ ++C+ Q
Sbjct: 126 -AKVTLNGVPAQP-------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177
Query: 148 --VRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI 204
V P + C+A G P + + LP
Sbjct: 178 LRVLYGPRLDERDCPGNWTWPENSQQTPMCQA---WGNPLPELKCLKDGTFPLPIGESVT 234
Query: 205 VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
V R G Y C + + + + V
Sbjct: 235 V---------TRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 63.2 bits (153), Expect = 2e-11
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 18/138 (13%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSN---GIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
L++ D+ + C + G + L V + ++ +
Sbjct: 140 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 199
Query: 73 QGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
C NP + KD P V ++ +G Y C
Sbjct: 200 NSQQTPMCQAWGNPLPEL-KCLKDGTFPLP------------IGESVTVTRDLEGTYLCR 246
Query: 131 PYNAHGTQGSSGQMEVLV 148
+ G + VL
Sbjct: 247 ARSTQGEVTREVTVNVLS 264
Score = 58.5 bits (141), Expect = 8e-10
Identities = 23/176 (13%), Positives = 44/176 (25%), Gaps = 14/176 (7%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
V + L P T + + R TC + +Q + + +
Sbjct: 38 VHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 97
Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN 208
P + + G V + CEA + +T L
Sbjct: 98 FPAPNVILTKPEV---SEGTEVTVKCEAHP-----RAKVTLNGVPAQPLGPR------AQ 143
Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLE 264
+ ++ + + C + EVA + E + P E
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 199
Score = 38.1 bits (88), Expect = 0.003
Identities = 20/200 (10%), Positives = 43/200 (21%), Gaps = 29/200 (14%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRV-----DFG 220
V + C + + D V + + + V
Sbjct: 17 VDTQGTVVCSLDGLFPVSEAQVHLALGD--QRLNPTVTYGNDSFSAKASVSVTAEDEGTQ 74
Query: 221 YYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF-SVTLEWLPGYSGGPDLKQNY 279
C V + + + +E VT++ P
Sbjct: 75 RLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC----EAHPR----- 125
Query: 280 VIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
+ +P Q+ + F E+ ++ + +
Sbjct: 126 AKVT-----LNGVPAQ-PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 179
Query: 340 ---GPK---PGPPRNVSVTE 353
GP+ P N + E
Sbjct: 180 VLYGPRLDERDCPGNWTWPE 199
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 78.0 bits (192), Expect = 4e-17
Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 18/139 (12%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG-- 74
+ +L I +DSG Y C+ YL V + + +G
Sbjct: 50 NSSLNIVNAKFEDSGEYKCQHQQVNES---EPVYLEVFSDWLLLQASAEVVM----EGQP 102
Query: 75 -VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
++CH N V + KD L+ + +N ++ T G Y CT
Sbjct: 103 LFLRCHGWRNWDVYKVIYYKDGEALKYWY-------ENHNISITNATVEDSGTYYCTGKV 155
Query: 134 AHGTQGSSGQMEVLVRKPP 152
S + + V K P
Sbjct: 156 WQLDY-ESEPLNITVIKAP 173
Score = 68.8 bits (168), Expect = 6e-14
Identities = 25/154 (16%), Positives = 40/154 (25%), Gaps = 21/154 (13%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C+ W + L E N SL G Y C
Sbjct: 25 TCNGNNFFEVSSTKWFHNGSLSE---------ETNSSLNIVNAKFEDSGEYKCQ------ 69
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
Q + V + + + + G+ + + C + + +DG A
Sbjct: 70 HQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGW--RNWDVYKVIY-YKDGEA 126
Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
L + NI+I D G Y C
Sbjct: 127 L---KYWYENHNISITNATVEDSGTYYCTGKVWQ 157
Score = 43.3 bits (102), Expect = 3e-05
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58
++ + I +DSG Y C + ++ + V +
Sbjct: 132 ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 78.6 bits (193), Expect = 5e-17
Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 13/185 (7%)
Query: 64 TVQYLPFRLQGV----VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV 119
V LP L ++V + + Y ++I+ NGSLLF +
Sbjct: 20 LVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII-YSNGSLLFQMI 78
Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA 179
G YT + + + + + + ++ + +SV + C +
Sbjct: 79 TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK-ELDSVTLTCLS--- 134
Query: 180 EGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEV-ATIVQA 236
I W R+ + + I+ ++R D G Y+C +SN V +
Sbjct: 135 -NDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNS 193
Query: 237 AQLVV 241
+L +
Sbjct: 194 IKLDI 198
Score = 70.5 bits (172), Expect = 3e-14
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
R +I +G+L+ + D G+Y ++++ A +V P V
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQ-PFLQVTNTTV 122
Query: 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
+ V +N + W + + L + + N L + + G Y C
Sbjct: 123 KELDSVTLTCLSNDIGANIQWLFNSQSL-QLTERMTLSQNNSILRIDPIKREDAGEYQCE 181
Query: 131 PYNAHGTQGSSGQMEVLVRKPPAFT 155
N + S +++ + P
Sbjct: 182 ISNPVSVR-RSNSIKLDIIFDPHHH 205
Score = 52.0 bits (124), Expect = 7e-08
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 2 NTKVGSLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
N++ L R+ + ++ L I+P+ +D+G Y CE+SN + ++ L++ F
Sbjct: 146 NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD 201
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 75.9 bits (187), Expect = 5e-17
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 26/135 (19%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
G S +V+T PGP ++S +E+ + + +SWQ P E+ ++ Y I +
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWE---- 56
Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
E + P + + + LT TTY +V
Sbjct: 57 ---------------------EYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMT 95
Query: 445 ELGDGMLSNIVVVKT 459
G G +S +
Sbjct: 96 SKGQGQVSASTISSG 110
Score = 62.8 bits (153), Expect = 2e-12
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLK----QNYVIWYREQGNKDWLPIPVTPPG 300
P +++ + S+ + W P K Y I + E + P
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQE-----PGEKNGILTGYRISWEEYNRTNTRVTHYLPNV 72
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
+ + + LT TTY +V G G +S + + G P P +
Sbjct: 73 TLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI--SSGVPPSGPSS 118
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 81.5 bits (200), Expect = 7e-17
Identities = 31/230 (13%), Positives = 55/230 (23%), Gaps = 30/230 (13%)
Query: 19 TLVINPVGSDDSGLYM--CEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
V ++D G C V G Q + + T + + V
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVILTKPEVSEGTEVTV 303
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C VT + LL +++ ++C+
Sbjct: 304 KCEAHPRAK---VTLNG---------VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVA 351
Query: 137 TQG--SSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRD 193
Q + E+ V P + C+A G P + +
Sbjct: 352 GQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW---GNPLPELKCLKDG 408
Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
LP V R G Y C + + + + V
Sbjct: 409 TFPLPIGESVTV---------TRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 78.0 bits (191), Expect = 1e-15
Identities = 35/289 (12%), Positives = 72/289 (24%), Gaps = 28/289 (9%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+++ + V + MC + G+ A P +V P + P
Sbjct: 40 KELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQP 99
Query: 70 FRLQGVVQCHIKANPTFQY--VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
++C ++ V + ++ L+ + +H +
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA--EVTTTVLVRRDHHGANF 157
Query: 128 TCTPYNAHGTQG------SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG 181
+C QG +S ++ PA + + +V + C
Sbjct: 158 SCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP 217
Query: 182 TQKPTITWQRRDGVALP--KNRVKIVGGNITIEGLRRVDFGYYE--CVVSNEVATIVQAA 237
+ + D P ++ + D G C V +
Sbjct: 218 VSEAQVHLALGDQRLNPTVTYGNDSFSAKASVS-VTAEDEGTQRLTCAVILGNQSQETLQ 276
Query: 238 QLVVEG-----TQPHAPYNITGVATEFS--------VTLEWLPGYSGGP 273
+ + P G VTL +P GP
Sbjct: 277 TVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP 325
Score = 73.4 bits (179), Expect = 4e-14
Identities = 35/251 (13%), Positives = 63/251 (25%), Gaps = 24/251 (9%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP--------QAAQAYLNV 53
K E V + T + + C + A
Sbjct: 126 GEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTF 185
Query: 54 EFPAKVTFTPTVQYLPFRLQGVVQCHIK-ANPTFQY-VTWTKDKRLLEPYQTKDIVVMQN 111
PA + + L QG V C + P + V + L P T
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 245
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
+ + R TC + +Q + + + P + + G V
Sbjct: 246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV---SEGTEVT 302
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231
+ CEA + +T L + ++ + + C + EVA
Sbjct: 303 VKCEA-----HPRAKVTLNGVPAQPLGPR------AQLLLKATPEDNGRSFSCSATLEVA 351
Query: 232 TIVQAAQLVVE 242
+ E
Sbjct: 352 GQLIHKNQTRE 362
Score = 68.4 bits (166), Expect = 1e-12
Identities = 18/138 (13%), Positives = 35/138 (25%), Gaps = 18/138 (13%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIG---EPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
L++ D+ + C + + + L V + ++ +
Sbjct: 325 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 384
Query: 73 QGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
C NP + KD P V ++ +G Y C
Sbjct: 385 NSQQTPMCQAWGNPLPEL-KCLKDGTFPLPIGES------------VTVTRDLEGTYLCR 431
Query: 131 PYNAHGTQGSSGQMEVLV 148
+ G + VL
Sbjct: 432 ARSTQGEVTREVTVNVLS 449
Score = 65.7 bits (159), Expect = 9e-12
Identities = 41/313 (13%), Positives = 89/313 (28%), Gaps = 28/313 (8%)
Query: 58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT 117
+ + +P+ LP +V C + + P K++++ N ++
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQP-MLLGIET------PLPKKELLLPGNNRKVYE 53
Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
N + C G S+ + + V P + VG+++ + C+ +
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQ--STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVE 111
Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT--IEGLRRVDFGYYECVVSNEV----- 230
T+ R L + +T + R + C ++
Sbjct: 112 GGAPRANLTVVL-LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGL 170
Query: 231 -----ATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
+ Q V P + + + T+ G + + V
Sbjct: 171 ELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC--SLDGLFPVSEAQVHLAL- 227
Query: 286 QGNKDWLPIPVTPPGSTQITINRLTPAT-TYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
G++ P S + A ++ LG+ + V P
Sbjct: 228 -GDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF-PA 285
Query: 345 PPRNVSVTEVNNG 357
P ++ EV+ G
Sbjct: 286 PNVILTKPEVSEG 298
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 78.0 bits (191), Expect = 1e-16
Identities = 31/217 (14%), Positives = 51/217 (23%), Gaps = 21/217 (9%)
Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGSTQI 304
P NIT ++ L+W P K Y + Y G K WL +
Sbjct: 11 KPANITFLSINMKNVLQWTPPEGLQGV-KVTYTVQYFIYGQKKWLNKSECRNINRTYCDL 69
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQP 364
+ Y +V + P V++T +
Sbjct: 70 SAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTA 129
Query: 365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQ 424
P + + + + S Y + VT +
Sbjct: 130 PEKWKRNPEDLPVSMQQIYSNLK------------YNVSVLNTKSNRTWSQCVT---NHT 174
Query: 425 ITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKT 459
+ + L P T Y V S +T
Sbjct: 175 LVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCART 211
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 75.1 bits (185), Expect = 1e-16
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 237 AQLVVEGTQPHAPYNITGV---ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP 293
A L V PHAP + ++ L W + G L Y++ E +
Sbjct: 10 AHLRVRQL-PHAPEHPVATLSTVERRAINLTWTKPFDGNSPL-IRYILEMSENNAPWTVL 67
Query: 294 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKP 343
+ P +T +T+ L PA +Y+F++ N++G G S V P
Sbjct: 68 LASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGP 118
Score = 64.7 bits (158), Expect = 4e-13
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 29/123 (23%)
Query: 342 KPGPPRNVSVT--EVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
P P + T V + ++W P + S + Y++
Sbjct: 17 LPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYIL--------------------- 55
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VV 457
E E + + P +T +T+ L PA +Y+F++ N++G G S V
Sbjct: 56 ----EMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111
Query: 458 KTK 460
Sbjct: 112 SLP 114
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 76.4 bits (188), Expect = 1e-16
Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 19/130 (14%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
+ + I+ +DSG Y C+ + +P L V + P + +
Sbjct: 52 QASSYFIDAATVNDSGEYRCQTNLSTLSDP----VQLEVHIGWLLLQAPRWVFK----EE 103
Query: 75 ---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131
++CH N VT+ ++ + + + N + G Y C
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-------HNSDFHIPKATLKDSGSYFCRG 156
Query: 132 YNAHGTQGSS 141
S
Sbjct: 157 LVGSKNVSSE 166
Score = 66.4 bits (162), Expect = 4e-13
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 21/153 (13%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C +P W ++ L+ Q S N G Y C +
Sbjct: 28 KCQGAYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRC---QTNL 75
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
+ S +++ V P +++ + + + C + + T +T+ ++G
Sbjct: 76 STLSD-PVQLEVHIGWLLLQAPRWVFK--EEDPIHLRCHSW--KNTALHKVTY-LQNGKD 129
Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
+ I D G Y C
Sbjct: 130 RKYFH---HNSDFHIPKATLKDSGSYFCRGLVG 159
Score = 37.2 bits (86), Expect = 0.004
Identities = 20/167 (11%), Positives = 43/167 (25%), Gaps = 28/167 (16%)
Query: 146 VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV 205
V+ +P +++ +SV + C+ + + T + +
Sbjct: 9 VVFLEPQWYSVLE--------KDSVTLKCQG---AYSPEDNSTQWFHNESLISSQ----- 52
Query: 206 GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEW 265
+ I+ D G Y C + + QL V E + L
Sbjct: 53 ASSYFIDAATVNDSGEYRCQTNLSTLS--DPVQLEVHIGWLLLQAPRWVFKEEDPIHLR- 109
Query: 266 LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPA 312
+ + V + ++ S I + T
Sbjct: 110 ---CHSWKNTALHKVTYL-----QNGKDRKYFHHNSD-FHIPKATLK 147
Score = 37.2 bits (86), Expect = 0.005
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ I DSG Y C G + + +
Sbjct: 135 HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 74.4 bits (183), Expect = 2e-16
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 6/114 (5%)
Query: 244 TQPHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDW--LPIPVTPPG 300
+ P +P + +++ P +GG + Y +R G + W
Sbjct: 6 SGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPI-LKYKAEWRAVGEEVWHSKWYDAKEAS 64
Query: 301 -STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVT 352
+TI L P TTY ++ N G G +S KT+ + P P+
Sbjct: 65 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSG 118
Score = 62.9 bits (153), Expect = 2e-12
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 29/121 (23%)
Query: 343 PGPPRNVSVTEVNNGFVISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P P V ++ + + P I Y
Sbjct: 8 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKA------------------------ 43
Query: 402 GEYREQGNKDW--LPIPVTPPG-STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
E+R G + W +TI L P TTY ++ N G G +S K
Sbjct: 44 -EWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 102
Query: 459 T 459
T
Sbjct: 103 T 103
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 74.3 bits (183), Expect = 2e-16
Identities = 32/147 (21%), Positives = 47/147 (31%), Gaps = 31/147 (21%)
Query: 318 QVVGKNELGDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQ 373
N G G+ ++ + V T P PP+NVS+ VN+ + +SW PP I
Sbjct: 3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFIT 62
Query: 374 YYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPA 433
Y I++R + P + L
Sbjct: 63 GYKIRHRKTTRRGEME---------------------------TLEPNNLWYLFTGLEKG 95
Query: 434 TTYEFQVVGKNELGDGMLSNIVVVKTK 460
+ Y FQV G G SN +T
Sbjct: 96 SQYSFQVSAMTVNGTGPPSNWYTAETP 122
Score = 50.8 bits (122), Expect = 4e-08
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 14/99 (14%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIPVTPPG 300
P N++ S+ + WLP P Y I +R+ + + P
Sbjct: 31 PPQNVSLEVVNSRSIKVSWLP-----PPSGTQNGFITGYKIRHRKTTRRG--EMETLEPN 83
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
+ L + Y FQV G G SN +T
Sbjct: 84 NLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETP 122
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 74.0 bits (182), Expect = 2e-16
Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 26/137 (18%)
Query: 326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDG 383
G S V+ +T P PR+V +++ + + W+ P E IQ Y + Y D
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDP 60
Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
+ N + S TI L P TY +V+
Sbjct: 61 TQHVNNW------------------------MKHNVADSQITTIGNLVPQKTYSVKVLAF 96
Query: 444 NELGDGMLSNIVVVKTK 460
+GDG LS+ + V T+
Sbjct: 97 TSIGDGPLSSDIQVITQ 113
Score = 54.7 bits (132), Expect = 1e-09
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK----QNYVIWYREQGNKDWLPIPVTPPGS- 301
AP ++ + ++ ++W P+ Q Y ++Y +
Sbjct: 21 APRDVQARMLSSTTILVQWKE-----PEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADS 75
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
TI L P TY +V+ +GDG LS+ + V T+ GP
Sbjct: 76 QITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ-TGSGPS 119
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 73.5 bits (181), Expect = 4e-16
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 30/136 (22%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS 384
G S + V T+ PG P N + ++SW PP R+ I Y +
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPP--RSDTIANYEL------- 51
Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
Y++ + + I + P T + L P + Y F++ ++
Sbjct: 52 ------------------VYKDGEHGEEQRITIEP--GTSYRLQGLKPNSLYYFRLAARS 91
Query: 445 ELGDGMLSNIVVVKTK 460
G G + + +T
Sbjct: 92 PQGLGASTAEISARTM 107
Score = 69.3 bits (170), Expect = 1e-14
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P P N +E S+ L W P S NY + Y++ + + I + P T
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSDTI---ANYELVYKDGEHGEEQRITIEP--GTSY 72
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ L P + Y F++ ++ G G + + +T + P
Sbjct: 73 RLQGLKPNSLYYFRLAARSPQGLGASTAEISART--MQSSGP 112
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 73.2 bits (180), Expect = 5e-16
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP-PGSTQ 303
P+ P+++ + SV L W PG + ++I Y + +K L T G+
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPGDDNNSPI-TKFIIEYEDAMHKPGLWHHQTEVSGTQT 75
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKP-GPPRNVSVT 352
L+P Y F+V+ N +G + S TK +P P + +
Sbjct: 76 TAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPSS 126
Score = 62.8 bits (153), Expect = 3e-12
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 28/126 (22%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
G S P PP ++ +T+ + V +SW P + S I ++I
Sbjct: 1 GSSGSSGPTPAPVYDV-PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFII------- 52
Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP-PGSTQITINRLTPATTYEFQVVGK 443
EY + +K L T G+ L+P Y F+V+
Sbjct: 53 ------------------EYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAV 94
Query: 444 NELGDG 449
N +G
Sbjct: 95 NSIGKS 100
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 74.5 bits (183), Expect = 6e-16
Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 27/165 (16%)
Query: 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKD----------IVVMQNGSLLFTRVNQNHQG 125
+ ++ + W K + Q + + +NG+L + + Q
Sbjct: 21 IPSFQMSDDIDD-IKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQD 79
Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
Y + Y+ G ++ +++ + KP+ + + + C E P
Sbjct: 80 IYKVSIYDTKGKNVLEKIFDLKIQERVS---KPKISWT---CINTTLTC---EVMNGTDP 130
Query: 186 TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
+ +DG L ++ + ++C N+V
Sbjct: 131 ELNL-YQDGKHLKLSQ------RVITHKWTTSLSAKFKCTAGNKV 168
Score = 59.5 bits (144), Expect = 1e-10
Identities = 18/145 (12%), Positives = 51/145 (35%), Gaps = 15/145 (10%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
+ + + K+GTL I + +DD +Y + + G+ + +++ +V+
Sbjct: 50 EKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGK-NVLEKIFDLKIQERVS- 107
Query: 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ 121
P + + + C + + +D + L+ + ++ +
Sbjct: 108 KPKISWTCINT--TLTCEVMNGTDPEL-NLYQDGKHLKL----------SQRVITHKWTT 154
Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEV 146
+ ++ CT N + S +
Sbjct: 155 SLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 45.3 bits (107), Expect = 9e-06
Identities = 22/174 (12%), Positives = 60/174 (34%), Gaps = 30/174 (17%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDG------------VALPKNRVKIVG-GNITIE 212
+G+ +++ + I W++ K+ K+ G + I+
Sbjct: 13 LGQDINLDIPS-FQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71
Query: 213 GLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGG 272
L+ D Y+ + + V ++ + + I+ ++T E G
Sbjct: 72 HLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEV----MNG 127
Query: 273 PDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
D + + Y+ + L + S ++ ++ T + + +F+ N++
Sbjct: 128 TDPE---LNLYQ---DGKHLKL------SQRVITHKWTTSLSAKFKCTAGNKVS 169
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 72.3 bits (178), Expect = 7e-16
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 29/119 (24%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
PGP N+ + + I+W+PP +Q Y +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRL------------------------ 43
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
E I V + L T Y + + N G G+ ++ + V T
Sbjct: 44 -FCTEVSTGKEQNIEVD---GLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTL 98
Score = 71.9 bits (177), Expect = 1e-15
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
P N+ V+ + S+ + W P Y+ GP Q Y ++ E I V
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANGP--VQGYRLFCTEVSTGKEQNIEVD---GLS 62
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ L T Y + + N G G+ ++ + V T GP
Sbjct: 63 YKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTL-SDSGPS 104
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 72.0 bits (177), Expect = 1e-15
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 27/135 (20%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEV-NNGFVISWQPPLERASLIQYYLIKYRTDGS 384
G S + T +P P + N + W+ P + S IQ +++
Sbjct: 1 GSSGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVL------- 53
Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
E+ E G + Q I +L+PA +F++ +N
Sbjct: 54 ------------------EWDE-GKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARN 94
Query: 445 ELGDGMLSNIVVVKT 459
+ G S V+ T
Sbjct: 95 DYGTSGFSEEVLYYT 109
Score = 68.2 bits (167), Expect = 3e-14
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 235 QAAQLVVEGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP 293
A +P P T+ S+TL+W G + QN+V+ + E G +
Sbjct: 7 GAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKI-QNFVLEWDE-GKGNGEF 64
Query: 294 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
Q I +L+PA +F++ +N+ G S V+ T G
Sbjct: 65 CQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 72.2 bits (177), Expect = 1e-15
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 1/101 (0%)
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
P P ++ S L GG + Y++ YR + +D I
Sbjct: 9 PSPPSIHGQPSSGKSFKLSITKQDDGGAPI-LEYIVKYRSKDKEDQWLEKKVQGNKDHII 67
Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ L YE Q+ N LG + P
Sbjct: 68 LEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108
Score = 62.5 bits (152), Expect = 2e-12
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 27/120 (22%)
Query: 337 KTKGP--KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIR 394
+ + +P PP F +S + + I Y++
Sbjct: 1 EAEASMREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIV----------------- 43
Query: 395 PEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454
+YR + +D I + L YE Q+ N LG +
Sbjct: 44 --------KYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY 95
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 73.9 bits (181), Expect = 1e-15
Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 28/180 (15%)
Query: 75 VVQCHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
++ C + + T W K +L+ F + + G Y+C
Sbjct: 17 LLTCSLNDSATEVTGHRWLKGGVVLKEDAL------PGQKTEFKVDSDDQWGEYSCVFLP 70
Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKPTITWQRR 192
G + + PP + + GE+ + C++ E W +
Sbjct: 71 EPM-----GTANIQLHGPPRVKAVKSSEHIN-EGETAMLVCKS---ESVPPVTDWAWYKI 121
Query: 193 DGVALPKN------RVKIVG----GNITIEGLRR-VDFGYYECVVSNEVATIVQAAQLVV 241
R + + IE L D G Y C ++ + L V
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 72.0 bits (176), Expect = 5e-15
Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 12/138 (8%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
D G Y C A + + P +V + +++ ++
Sbjct: 48 GQKTEFKVDSDDQWGEYSCVFLP----EPMGTANIQLHGPPRVKAVKSSEHINEGETAML 103
Query: 77 QCHIKANPTFQYVTWTKDK----RLLEPYQTKDIVVMQNG---SLLFTRVN-QNHQGRYT 128
C ++ P W K + L V + L +N + G+Y
Sbjct: 104 VCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR 163
Query: 129 CTPYNAHGTQGSSGQMEV 146
C ++ G+ + + V
Sbjct: 164 CNGTSSKGSDQAIITLRV 181
Score = 39.6 bits (92), Expect = 6e-04
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 7 SLETRVVIKKDG---TLVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNV 53
E+R + L I + D G Y C ++ G Q A L V
Sbjct: 132 GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ-AIITLRV 181
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 71.6 bits (176), Expect = 1e-15
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 143 QMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-R 201
Q+ VL R P T E +GES+++ C A G P I W + D L ++
Sbjct: 2 QLTVLERVAPTITGNLENQT-TSIGESIEVSCTA---SGNPPPQIMWFK-DNETLVEDSG 56
Query: 202 VKIVGGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
+ + GN I +R+ D G Y C + + A ++EG Q
Sbjct: 57 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
Score = 52.0 bits (125), Expect = 1e-08
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAH 135
C NP Q + W KD L IV+ N +L RV + +G YTC +
Sbjct: 31 SCTASGNPPPQ-IMWFKDNETLVE--DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 87
Query: 136 GTQGSSGQMEVLVRKPPAFT 155
G + + ++ T
Sbjct: 88 GC--AKVEAFFIIEGAQEKT 105
Score = 44.2 bits (105), Expect = 5e-06
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 11 RVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
+V+K L I V +D GLY C+ + +G + +A+ +E + T
Sbjct: 56 GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAK-VEAFFIIEGAQEKT 105
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 71.3 bits (175), Expect = 2e-15
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 243 GTQ---PHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPV-- 296
G+ P +P + +++ P +GG + Y +R G + W
Sbjct: 1 GSHMDTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPI-LKYKAEWRAVGEEVWHSKWYDA 59
Query: 297 -TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
+TI L P TTY ++ N G G +S KT+
Sbjct: 60 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 65.1 bits (159), Expect = 2e-13
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 23/119 (19%)
Query: 343 PGPPRNVSVTEVNNGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P P V ++ + + P I Y ++R G
Sbjct: 7 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE----------------- 49
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
E + W +TI L P TTY ++ N G G +S KT+
Sbjct: 50 ----EVWHSKWYDAKEASM-EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 76.8 bits (188), Expect = 2e-15
Identities = 32/206 (15%), Positives = 53/206 (25%), Gaps = 37/206 (17%)
Query: 242 EGTQPHAPYNITGVATEF-SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP--VTP 298
+G ++ V + + W PG D NY ++Y +G L +
Sbjct: 133 QGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLD--TNYNLFYWYEGLDHALQCVDYIKA 190
Query: 299 PGST---QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN 355
G + + + V G +E S KP PP ++ T +
Sbjct: 191 DGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRES 250
Query: 356 NG-FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414
+ + W PL I Y +I RE
Sbjct: 251 SCEIKLKWSIPL---GPIPARCFDY------------EIE---------IREDDTTLV-- 284
Query: 415 IPVTPPGSTQITINRLTPATTYEFQV 440
+ T+ F V
Sbjct: 285 --TATVENETYTLKTTNETRQLCFVV 308
Score = 61.0 bits (147), Expect = 3e-10
Identities = 31/248 (12%), Positives = 64/248 (25%), Gaps = 34/248 (13%)
Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF--SVTLEWLP--GYSGGPDLKQNY 279
C+ + ++T + + P + V + + L+W P + Y
Sbjct: 10 CLYTFLISTTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEY 69
Query: 280 VIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM------LSNI 333
+ YR G++ W + L + + +G
Sbjct: 70 ELKYRNIGSETW--KTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETT 127
Query: 334 VVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
+ +G +++ N + SW+P + Y L Y +G L
Sbjct: 128 YWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNL-FYWYEGLDHAL---- 182
Query: 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452
+ Y+ + G P + + V G +E S
Sbjct: 183 ---QCVDYI---KADGQNIGCRFPYLE----------ASDYKDFYICVNGSSENKPIRSS 226
Query: 453 NIVVVKTK 460
Sbjct: 227 YFTFQLQN 234
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 75.9 bits (186), Expect = 3e-15
Identities = 23/176 (13%), Positives = 46/176 (26%), Gaps = 22/176 (12%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C ++ Q W + K + G L + ++ TC N G
Sbjct: 179 RCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG 237
Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
S ++V V P + + + G P++ W V
Sbjct: 238 RAEVS--VQVNVSFPASVQLHTAVEM-----HHWCIPFSVD---GQPAPSLRWLFNGSVL 287
Query: 197 LPKNRVKI-----------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
+ + G + + V+ G Y + +N +
Sbjct: 288 NETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
Score = 74.0 bits (181), Expect = 1e-14
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 16/159 (10%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
+ ++ + G + N + C N +G + +NV FP
Sbjct: 197 LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAE-VSVQVNVSFP----A 251
Query: 62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL--------EPYQTKDIVVMQNGS 113
+ + + + P + W + +L E + +++G
Sbjct: 252 SVQLHTAVEMHHWCIPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 310
Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
L + + G YT N G +S + P
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQ--ASASIMAAFMDNP 347
Score = 49.4 bits (117), Expect = 1e-06
Identities = 20/149 (13%), Positives = 39/149 (26%), Gaps = 9/149 (6%)
Query: 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDM 172
+L + + + QG M P ++ VG+ V +
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNA-SVDVGDDVLL 178
Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT---IEGLRRVDFGYYECVVSNE 229
C+ EG W + ++ ++ C N+
Sbjct: 179 RCQV---EGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235
Query: 230 VATIVQAAQLVVEGTQPHAPYNITGVATE 258
V + Q+ V + P + T V
Sbjct: 236 VGRAEVSVQVNV--SFPASVQLHTAVEMH 262
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 73.7 bits (180), Expect = 3e-15
Identities = 30/182 (16%), Positives = 52/182 (28%), Gaps = 15/182 (8%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
V+ C + + I ++ G C
Sbjct: 28 VIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIN 86
Query: 135 HGTQGSSGQMEVLVRKPPA-FTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITW---- 189
+ S + V+V + P + VGE + ++C A E W
Sbjct: 87 DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA-RTELNVGIDFNWEYPS 145
Query: 190 --------QRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
RD + +K +TI+G+ R D G Y C S+ + T + + V
Sbjct: 146 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
Query: 242 EG 243
Sbjct: 206 HE 207
Score = 64.4 bits (156), Expect = 4e-12
Identities = 23/156 (14%), Positives = 41/156 (26%), Gaps = 15/156 (9%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
R+ I +G+ CE Q+ + V + +
Sbjct: 56 NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI 115
Query: 70 FRLQG---VVQCHIKANPTFQY-VTWTKDKRLLE---------PYQTKDIVVMQNGSLLF 116
G V+ C + W + Q+ + +L
Sbjct: 116 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 175
Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
V ++ QG YTC + T+ V V + P
Sbjct: 176 DGVTRSDQGLYTCAASSGLMTK--KNSTFVRVHEDP 209
Score = 37.1 bits (85), Expect = 0.006
Identities = 11/107 (10%), Positives = 27/107 (25%), Gaps = 9/107 (8%)
Query: 152 PAFTIKPEAMY-QRKVGESVDMHCEAQEAEGTQKPTITWQRRDG-VALPKNRVKIV---G 206
+ + + +Y ++V + C + ++ R + +I
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSISN----LNVSLCARYPEKRFVPDGNRISWDSK 63
Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT 253
TI G C + +VV ++
Sbjct: 64 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLS 110
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 70.5 bits (173), Expect = 4e-15
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
AP ++T T+ + TL+W P G Y++ Y +G+++W+P P
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 305 TINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG 344
T+ L F+VVG N G L V ++ GP G
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSSG 111
Score = 69.3 bits (170), Expect = 9e-15
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 31/128 (24%)
Query: 336 VKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQI 393
+ GP P++++V +V + + W+PP A I YL+
Sbjct: 3 SGSSGP-TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLV---------------- 45
Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---M 450
EY +G+++W+P P T+ L F+VVG N G
Sbjct: 46 ---------EYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPAT 96
Query: 451 LSNIVVVK 458
L V ++
Sbjct: 97 LLQPVTIR 104
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 70.5 bits (173), Expect = 4e-15
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 26/121 (21%)
Query: 343 PGPPRNVSVTEVNNG---FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
P++++V ++SWQPPLE I Y++ Y D +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKN--------------- 53
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
DW+ + I L T Y F++ +N G G LS+ ++ +T
Sbjct: 54 -------IPIDDWIMETI-SGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105
Query: 460 K 460
Sbjct: 106 L 106
Score = 66.3 bits (162), Expect = 1e-13
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 246 PHAPYNITGVATEF---SVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPP 299
AP ++T + E +V + W P + Y+++Y N DW+ +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANGKI-TAYILFYTLDKNIPIDDWIMETI-SG 66
Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
I L T Y F++ +N G G LS+ ++ +T GP
Sbjct: 67 DRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTL-KVSGPS 112
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 72.9 bits (178), Expect = 5e-15
Identities = 36/223 (16%), Positives = 61/223 (27%), Gaps = 25/223 (11%)
Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPG 300
+ P + + F L+W PG + + Y + Y+ G + W T
Sbjct: 6 HESLKPQRVQFQSRNFHNILQWQPGRALTGNS-SVYFVQYKIYGQRQWKNKEDCWGTQEL 64
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVI 360
S +T Y +V + S P +++T+VN ++
Sbjct: 65 SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLV 124
Query: 361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQ--GNKDWLPIPVT 418
P K + E+ Y YR N V
Sbjct: 125 ILHAPN-----------------LPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVY 167
Query: 419 PPGSTQITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKT 459
+ I LTP ++Y + D S V+
Sbjct: 168 EGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCVEI 210
Score = 42.8 bits (100), Expect = 8e-05
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 338 TKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGS 384
+ P+ V N ++ WQP Y ++Y+ G
Sbjct: 3 QSTHESLKPQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQ 49
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 69.7 bits (171), Expect = 5e-15
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGNI 209
+ ++ E + G+ + + C ++ +I W RDGV L NR +I G +
Sbjct: 3 SGSSGVEVE-SFLVHPGDLLQLRCRLRD----DVQSINW-LRDGVQLAESNRTRITGEEV 56
Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYN 251
++ D G Y CV S+ + + V P P +
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98
Score = 43.9 bits (104), Expect = 5e-06
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C ++ + Q + W +D L + + + G Y C + G
Sbjct: 24 RCRLRDDV--QSINWLRDGVQLAE---SNRTRITGEEVEVQDSVPADSGLYACVTSSPSG 78
Query: 137 TQGSSGQMEVLVRKPPA 153
+ + + V P
Sbjct: 79 SDTTYFSVNVSDALPSG 95
Score = 42.0 bits (99), Expect = 3e-05
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
R I + + DSGLY C S+ G +NV
Sbjct: 48 RTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSDTTY-FSVNVS 89
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 70.1 bits (172), Expect = 6e-15
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 236 AAQLVVEGTQPHAPYNITGV-ATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLP 293
+ + + P P + +V L W P G + Y I ++ + +W
Sbjct: 9 SIDIQIIDR-PGPPQIVKIEDVWGENVALTWTPPKDDGNAAI-TGYTIQKADKKSMEWFT 66
Query: 294 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKP 343
+ + T TI L Y F+V +N G ++ V + K
Sbjct: 67 V-IEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118
Score = 63.9 bits (156), Expect = 8e-13
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 31/124 (25%)
Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
+PGPP+ V + +V V ++W PP + + I Y I
Sbjct: 17 RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTI---------------------- 54
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVV 456
+ ++ + +W + + T TI L Y F+V +N G ++
Sbjct: 55 ---QKADKKSMEWFTV-IEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESA 110
Query: 457 VKTK 460
V +
Sbjct: 111 VIAR 114
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 69.8 bits (171), Expect = 7e-15
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 17/120 (14%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
GSSG PP P V + + C A G+ PTI W++ DGV +
Sbjct: 1 GSSGSSG-----PPVIRQGPVNQ-TVAVDGTFVLSCVA---TGSPVPTILWRK-DGVLVS 50
Query: 199 KN--RVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG----TQPHAPYN 251
R+K + G + I + D G Y C+ S +A + V+ QP P +
Sbjct: 51 TQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110
Score = 57.1 bits (138), Expect = 2e-10
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C +P + W KD L+ Q I ++NG L GRYTC G
Sbjct: 29 SCVATGSPVPT-ILWRKDGVLVST-QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG 86
Query: 137 TQGSSGQMEVLVRKPPAFTIKPE 159
++ + V++ P
Sbjct: 87 E--ATWSAYIEVQEFGVPVQPPR 107
Score = 52.8 bits (127), Expect = 7e-09
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 5 VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
V + ++R+ ++G L I D+G Y C S GE AY+ V+ P
Sbjct: 49 VSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEAT-WSAYIEVQEFGVPVQPP 106
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 71.9 bits (176), Expect = 7e-15
Identities = 20/188 (10%), Positives = 44/188 (23%), Gaps = 39/188 (20%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ------------------NGSLLFTR 118
C + Q W ++ + N L+
Sbjct: 16 TCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 74
Query: 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE 178
+ Y C + + + + G+S+ + E+
Sbjct: 75 LKIEDSDTYIC---EVEDQKEEVQLLVFGLTANSDTHLLQ--------GQSLTLTLES-- 121
Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
P++ + G + +++ L D G + C V +
Sbjct: 122 -PPGSSPSVQCRSPRGKNIQGG------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 174
Query: 239 LVVEGTQP 246
+VV Q
Sbjct: 175 IVVLAFQK 182
Score = 64.6 bits (157), Expect = 2e-12
Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 19/131 (14%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
+ L+I + +DS Y+CEV + E Q L + ++ +
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSL---------TL 117
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+ V + + +L +++ G +TCT
Sbjct: 118 TLESPPGSSPS-VQCRSPRG---------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQK 167
Query: 137 TQGSSGQMEVL 147
+ VL
Sbjct: 168 KVEFKIDIVVL 178
Score = 43.8 bits (103), Expect = 3e-05
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 24/90 (26%)
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV------------------- 205
K G++V++ C A + W+ + + + N+ +
Sbjct: 8 KKGDTVELTC---TASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 206 --GGNITIEGLRRVDFGYYECVVSNEVATI 233
+ I+ L+ D Y C V ++ +
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEV 94
Score = 41.1 bits (96), Expect = 2e-04
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
I+ TL ++ + DSG + C V + + + + V K +
Sbjct: 134 PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVLAFQKAS 184
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 69.7 bits (171), Expect = 7e-15
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 244 TQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ P +T T+ +VT+ W P G YV+ Y +G +DW+ T
Sbjct: 6 SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKT 65
Query: 303 QITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG 344
+ TI L +V N G S ++VK GP G
Sbjct: 66 KFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110
Score = 65.8 bits (161), Expect = 2e-13
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 30/121 (24%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
PP ++V V + V + W+PP A+ + Y++
Sbjct: 8 TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVL----------------------- 44
Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVV 457
EY +G +DW+ T+ TI L +V N G S ++V
Sbjct: 45 --EYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV 102
Query: 458 K 458
K
Sbjct: 103 K 103
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 70.0 bits (171), Expect = 7e-15
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 240 VVEGTQPHAPYNITGVATEFSVTLEWLP----GYSGGPDLKQNYVIWYREQGNKDWLPIP 295
VV ++PH P + G T S+ L W G + + I + +
Sbjct: 13 VVPLSKPHPP--VVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSY--GV 68
Query: 296 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
+ +T+ + L P T Y+F++ + G+ S +V V T
Sbjct: 69 IYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 61.5 bits (149), Expect = 6e-12
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 27/137 (19%)
Query: 326 GDGMLSNIVVVKTKGP-KPGPPRNVSVTEVNNGFVISWQPPLER-ASLIQYYLIKYRTDG 383
G S + K KP PP VT ++ + W + Q +++
Sbjct: 1 GSSGSSGMEPHKVVPLSKPHPPVVGKVT--HHSIELYWDLEQKEKRQGPQEQWLRFSI-- 56
Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
E + + + +T+ + L P T Y+F++
Sbjct: 57 -------------------EEEDPKMHSY--GVIYTGYATRHVVEGLEPRTLYKFRLKVT 95
Query: 444 NELGDGMLSNIVVVKTK 460
+ G+ S +V V T
Sbjct: 96 SPSGEYEYSPVVSVATT 112
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 69.7 bits (171), Expect = 7e-15
Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 27/118 (22%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P + V + WQ P + +I Y IKY
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDK----------------- 53
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+ +T+ T++ L P T Y FQV + G G S + V+T
Sbjct: 54 ---------EMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET 102
Score = 62.0 bits (151), Expect = 3e-12
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
P I + SV+L W P G Y I Y E+ + +T+
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGI--ILEYEIKYYEKDKEMQS-YSTLKAVTTR 67
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
T++ L P T Y FQV + G G S + V+T P GP
Sbjct: 68 ATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP-SGPS 109
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 69.3 bits (170), Expect = 7e-15
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 243 GTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
+ P P + A ++L+W D +Y++ E+ + P
Sbjct: 5 SSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFK-PKYDGED 63
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
T+ L +T Y+F+V+ N G S +V T
Sbjct: 64 LAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 61.6 bits (150), Expect = 4e-12
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 28/124 (22%)
Query: 338 TKGPKPGPPRNVSVTEVNNGFV-ISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRP 395
+ P P + +T+ ++ + W P + Y++
Sbjct: 3 SGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYIL------------------ 44
Query: 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455
E E+ + P T+ L +T Y+F+V+ N G S +V
Sbjct: 45 -------EMEEETSGYGFK-PKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVV 96
Query: 456 VVKT 459
T
Sbjct: 97 EFTT 100
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 69.4 bits (170), Expect = 8e-15
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 246 PHAPYNITGV---ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
P AP N+ E + W P + + Y++ Y G+K W S
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLI-REYIVEYSRSGSKMWASQRAA---SN 63
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP 345
I L T Y +V G G S+ + T
Sbjct: 64 FTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGPS 106
Score = 67.1 bits (164), Expect = 5e-14
Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 31/121 (25%)
Query: 343 PGPPRNVSVTEVNNG---FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
P PRN+ ++ V W PP+ LI+ Y++
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIV---------------------- 45
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
EY G+K W S I L T Y +V G G S+ + T
Sbjct: 46 ---EYSRSGSKMWASQRAA---SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITT 99
Query: 460 K 460
Sbjct: 100 I 100
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 69.3 bits (170), Expect = 1e-14
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 30/131 (22%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTD-- 382
G S + P P +++ + V ++W P IQ + ++Y+
Sbjct: 1 GSSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKK 60
Query: 383 -GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 441
G W PP + I L +Y+F+V
Sbjct: 61 VGDWILATS--------------------------AIPPSRLSVEITGLEKGISYKFRVR 94
Query: 442 GKNELGDGMLS 452
N LG+ S
Sbjct: 95 ALNMLGESEPS 105
Score = 67.0 bits (164), Expect = 8e-14
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ-GNKDWLPIP-VTPPGST 302
P AP T A+E SV + W+P +GG + Q++ + Y++ DW+ PP
Sbjct: 18 PEAPDRPTISTASETSVYVTWIPRGNGGFPI-QSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKPGP 345
+ I L +Y+F+V N LG+ S G P
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPSS 120
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 73.3 bits (179), Expect = 1e-14
Identities = 33/252 (13%), Positives = 70/252 (27%), Gaps = 43/252 (17%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT--PTVQYLPFRLQGV 75
TL + S+++G Y V + +E + P Y+ +
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 76 VQCHIKA--------NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
+ +K N Y +W+K + V+ + + G Y
Sbjct: 112 LHATVKFSGGKTPADNYELHY-SWSKG----------EDVIDTTQDITIQEFTADKNGVY 160
Query: 128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEA-----QEAEG 181
T + +S + + + +G + ++ ++ G
Sbjct: 161 TVKVWGESEDSAASAS--TKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSG 218
Query: 182 TQKPTITWQ---RRDGVALPKNRVKIVG-----------GNITIEGLRRVDFGYYECVVS 227
TI + +R+G P VG G++ E D + CV
Sbjct: 219 MPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK 278
Query: 228 NEVATIVQAAQL 239
+ ++
Sbjct: 279 LYQQIEDETVEV 290
Score = 68.7 bits (167), Expect = 5e-13
Identities = 36/254 (14%), Positives = 66/254 (25%), Gaps = 33/254 (12%)
Query: 84 PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143
P+ TWTKD + E +L + G Y T + +
Sbjct: 33 PSNLTYTWTKDDQPHEN---------NTATLTVADATSENAGSYKVTVQDTDTMTSVESE 83
Query: 144 MEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK 203
+ ++ I + V++H + + G + K
Sbjct: 84 VFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELH---YSWSKGEDV 140
Query: 204 IVG-GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG--TQPHAPYNITGVATEF- 259
I +ITI+ G Y V E +A + +
Sbjct: 141 IDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGN 200
Query: 260 SVTLEWLPGY------SGGPDLKQNYVIWYREQGNKDWLPIP-----------VTPPGST 302
++L ++ SG P+L Y + + +G I +TP G
Sbjct: 201 EISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHL 260
Query: 303 QITINRLTPATTYE 316
+
Sbjct: 261 FKESATYDDTAKFW 274
Score = 64.1 bits (155), Expect = 2e-11
Identities = 40/254 (15%), Positives = 73/254 (28%), Gaps = 26/254 (10%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQ-EAEGTQKPTITWQRRDGVALPKNRVKIVGGNI 209
+I+ G+ + + T TW + D N +
Sbjct: 2 AFTVSIQSNKR-CFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHENN-----TATL 54
Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI----TGVATEFSVTLEW 265
T+ + G Y+ V + +++ + V+++ V L
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 266 LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL 325
+SGG NY + Y W + ITI T + V E
Sbjct: 115 TVKFSGGKTPADNYELHYS------WSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGES 168
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVT-EVNNGFVISWQPPLE---RASLIQYYLIKYRT 381
D S + S T + N +++ + +S + IKY
Sbjct: 169 EDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY-- 226
Query: 382 DGSWKTLNKGQIRP 395
+W +GQ+ P
Sbjct: 227 --NWYLQREGQLSP 238
Score = 50.2 bits (119), Expect = 5e-07
Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 21/150 (14%)
Query: 12 VVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL--- 68
VI + I +D +G+Y +V + A+ A + V+
Sbjct: 139 DVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAAS-ASTKIMLATMNVDQDVVESKTVA 197
Query: 69 ---PFRLQGVVQCHIKA------NPTFQYVTWTKDKRLLEP--------YQTKDIVVMQN 111
L VV I N T +Y + + + L P + + +
Sbjct: 198 LGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPD 257
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
G L + ++ C + +
Sbjct: 258 GHLFKESATYDDTAKFWCVAKLYQQIEDET 287
Score = 32.1 bits (72), Expect = 0.38
Identities = 9/45 (20%), Positives = 13/45 (28%)
Query: 3 TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAA 47
++VG I DG L DD+ + C
Sbjct: 243 SEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDET 287
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 69.0 bits (169), Expect = 1e-14
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 28/136 (20%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSW 385
G S + P P ++ V N ++SW PPL +++ Y+I Y
Sbjct: 1 GSSGSSGPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGV---- 56
Query: 386 KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 445
G+ + V +I RL ++ Y + N
Sbjct: 57 ----------------------GSPYAETVRVDSK-QRYYSIERLESSSHYVISLKAFNN 93
Query: 446 LGDGM-LSNIVVVKTK 460
G+G+ L ++
Sbjct: 94 AGEGVPLYESATTRSI 109
Score = 62.1 bits (151), Expect = 4e-12
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
P P ++ + + W P + + + Y+I Y G+ + V +
Sbjct: 18 PDQPSSLHVRPQTNCIIMSWTPPLNPNIVV-RGYIIGYGV-GSPYAETVRVDSK-QRYYS 74
Query: 306 INRLTPATTYEFQVVGKNELGDGM-LSNIVVVKTKGPKPG 344
I RL ++ Y + N G+G+ L ++ P
Sbjct: 75 IERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPS 114
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 69.3 bits (170), Expect = 1e-14
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 25/127 (19%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
G S + PGPP N+ ++ + V + ++P + + I +L++ +
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVV 60
Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIP--VTPPGSTQITINRLTPATTYEFQVVG 442
+ ++WL I P + + + L P T Y F++
Sbjct: 61 GE----------------------GEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQ 98
Query: 443 KNELGDG 449
N +G
Sbjct: 99 VNIVGTS 105
Score = 65.4 bits (160), Expect = 3e-13
Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 227 SNEVATIVQAAQLVVEGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
S TI + P P N+ SVTL++ PGY G + +++ +
Sbjct: 3 SGSSGTISSGVPPEL----PGPPTNLGISNIGPRSVTLQFRPGYDGKTSI-SRWLVEAQV 57
Query: 286 Q---GNKDWLPIP--VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTK 339
++WL I P + + + L P T Y F++ N +G S ++T
Sbjct: 58 GVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL 117
Query: 340 GPKPG 344
P
Sbjct: 118 QSGPS 122
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 68.6 bits (168), Expect = 1e-14
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 13/109 (11%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
GSSG PP P V + + C+A G P I+W + +G P
Sbjct: 1 GSSGSSG-----PPIILQGPANQ-TLAVDGTALLKCKA---TGDPLPVISWLK-EGFTFP 50
Query: 199 KN--RVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
R I G + I+ LR D G Y CV ++ +A L V +
Sbjct: 51 GRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 52.4 bits (126), Expect = 5e-09
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C +P ++W K+ P + + + G+L + + G YTC ++ G
Sbjct: 29 KCKATGDPLPV-ISWLKEGFTF-PGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG 86
Query: 137 TQGSSGQMEVL 147
S ++V
Sbjct: 87 ETSWSAVLDVT 97
Score = 49.7 bits (119), Expect = 6e-08
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+ R I++ GTL I + D+G Y C ++ GE A L+V
Sbjct: 46 GFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETS-WSAVLDVT 97
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 69.0 bits (169), Expect = 1e-14
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 34/145 (23%)
Query: 323 NELGDGMLSNIVVVKT------KGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYL 376
+ G ++ + +T + P P ++ V + V+SW PP + +++ Y
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYA 61
Query: 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 436
I Y TI L P++ Y
Sbjct: 62 IGYGIGSPHAQ---------------------------TIKVDYKQRYYTIENLDPSSHY 94
Query: 437 EFQVVGKNELGDGM-LSNIVVVKTK 460
+ N +G+G+ L V +
Sbjct: 95 VITLKAFNNVGEGIPLYESAVTRPH 119
Score = 60.5 bits (147), Expect = 1e-11
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 229 EVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN 288
+ + + E P P ++ S+ + W P + + + Y I Y G+
Sbjct: 11 DWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVV-RGYAIGYGI-GS 68
Query: 289 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM-LSNIVVVKTKGPKPG 344
I V TI L P++ Y + N +G+G+ L V + P
Sbjct: 69 PHAQTIKV-DYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPS 124
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 69.0 bits (169), Expect = 2e-14
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 136 GTQGSSGQMEVLV-----RKPPAFTI--KPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
G+ GSSG + V +PP + Y RKVGE +++ Q G +P +
Sbjct: 1 GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ---GKPRPQVV 57
Query: 189 WQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
W + G L +RV + + R D G YE V E ++ V
Sbjct: 58 WTK-GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 42.0 bits (99), Expect = 3e-05
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
+ + P Q V WTK L+ + + + ++ G Y + +
Sbjct: 44 LVVPFQGKPRPQ-VVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIEN 102
Query: 136 GTQGSSGQMEVLVR 149
++ ++ V+ +
Sbjct: 103 MKDTATIRIRVVEK 116
Score = 37.0 bits (86), Expect = 0.002
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
D + DSG Y V + A + V
Sbjct: 76 DFDTVFFVRQAARSDSGEYELSVQIENMK-DTATIRIRV 113
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 71.3 bits (174), Expect = 2e-14
Identities = 19/185 (10%), Positives = 49/185 (26%), Gaps = 34/185 (18%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP---VTPPGSTQITINRLTPATTYE 316
+ W P WY+ N + ++ + +
Sbjct: 14 YMNCTWQSSSEPQPT-NLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQT 72
Query: 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYY 375
F V ++ + ++ P P N+++ +++ + ++W L
Sbjct: 73 FVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLE--- 129
Query: 376 LIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATT 435
+L +YR + W + + ++ +
Sbjct: 130 ------------------------HLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKR 163
Query: 436 YEFQV 440
Y F+V
Sbjct: 164 YTFRV 168
Score = 46.3 bits (109), Expect = 5e-06
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVV--EGTQPHAPYNIT-GVATEFSVTLEWL 266
++ + + + + QA Q++ P AP N+T +E + L W
Sbjct: 61 QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 120
Query: 267 PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
+ + +++ YR + W + + ++ + Y F+V
Sbjct: 121 NRF---LNHCLEHLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKRYTFRV 168
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 70.8 bits (173), Expect = 2e-14
Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 25/170 (14%)
Query: 77 QCHIKANPTFQYVTWTKDKRLL----------------EPYQTKDIVVMQNGSLLFTRVN 120
A ++TW ++ L P Q K + Q+ SL + +
Sbjct: 19 PLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLK 78
Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
G Y + SS + + +R+ + + + + + + C + +
Sbjct: 79 MEDTGSYRAQISTKTSAKLSSYTLRI-LRQLRNIQVTNHSQLFQNMTCELHLTCSVE--D 135
Query: 181 GTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
+ W+ + + + R Y C+ N V
Sbjct: 136 ADDNVSFRWEALGNTLSSQPNLTV------SWDPRISSEQDYTCIAENAV 179
Score = 48.1 bits (114), Expect = 1e-06
Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 14/126 (11%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL-P 69
R+ + +L ++ + +D+G Y ++S ++ + + T Q
Sbjct: 63 RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQN 122
Query: 70 FRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ-GRY 127
+ + C ++ A+ + W L +L + + Y
Sbjct: 123 MTCELHLTCSVEDADDNVSF-RWEALGNTLSS----------QPNLTVSWDPRISSEQDY 171
Query: 128 TCTPYN 133
TC N
Sbjct: 172 TCIAEN 177
Score = 33.0 bits (75), Expect = 0.13
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVAL------------------PKNRVKIVG- 206
+GESV + E G + ITW + R+
Sbjct: 12 LGESVTLPLEFPA--GEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69
Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
++ + L+ D G Y +S + + + + L
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTL 102
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 71.8 bits (175), Expect = 2e-14
Identities = 19/185 (10%), Positives = 49/185 (26%), Gaps = 34/185 (18%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGSTQITINRLTPATTYE 316
+ W P WY+ N + ++ + +
Sbjct: 52 YMNCTWQSSSEPQPT-NLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQT 110
Query: 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYY 375
F V ++ + ++ P P N+++ +++ + ++W L
Sbjct: 111 FVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLE--- 167
Query: 376 LIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATT 435
+L +YR + W + + ++ +
Sbjct: 168 ------------------------HLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKR 201
Query: 436 YEFQV 440
Y F+V
Sbjct: 202 YTFRV 206
Score = 50.6 bits (120), Expect = 3e-07
Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 14/147 (9%)
Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVV--EGTQPHAPYNITGV-ATEFSVTLEWL 266
++ + + + + QA Q++ P AP N+T +E + L W
Sbjct: 99 QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 158
Query: 267 PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
+ + +++ YR + W + + ++ + Y F+V +
Sbjct: 159 NRF---LNHCLEHLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPL 213
Query: 327 DGML------SNIVVVKTKGPKPGPPR 347
G S+ + + K P
Sbjct: 214 CGSAQHWSEWSHPIHWGSNTSKENPRT 240
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 72.2 bits (176), Expect = 2e-14
Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 34/168 (20%)
Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV 166
+GSLL V + +G YTC + + +E+ V ++ V
Sbjct: 79 TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR------V 132
Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALP----------------------KNRVKI 204
G++ M C Q E + + W G +NRV +
Sbjct: 133 GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192
Query: 205 VG------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
G G+I ++ ++ D G Y C + + L V +
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF 240
Score = 65.7 bits (159), Expect = 3e-12
Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 29/205 (14%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------ 198
P T+ + + VGESV M C Q E + W
Sbjct: 5 LPGLTVSSPQL-RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 199 ------KNRVKIVG------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
+NR +VG G++ ++ +++ D G Y C + + ++V + + P
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW-VLP 122
Query: 247 HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
P ++ V + + + + V W G+ ++ + +
Sbjct: 123 EEPRDLR-VRVGDTTQMR--CSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179
Query: 307 NRLTPATTYEFQVVGKNELGDGMLS 331
+ + G DG +
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIK 204
Score = 64.9 bits (157), Expect = 6e-12
Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 32/175 (18%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
DG+L++ V D G+Y CE+ + + + + P +
Sbjct: 79 TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVM-KKPVEL---WVLPEEPRDLRVRVGD 134
Query: 73 QGVVQCHIKANPTFQ--YVTWTKDKRLLEP-------------------YQTKDIVVMQ- 110
++C I++ + V W + ++ V +
Sbjct: 135 TTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTG 194
Query: 111 -----NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160
+GS+ V ++ QG YTC+ Y + + V+ TI P
Sbjct: 195 DISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ-DEFQRTISPTP 248
Score = 46.0 bits (108), Expect = 1e-05
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPTVQ 66
T + + DG++ + V D G+Y C + G E + L+V + + T +PT
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESR-KTIVLHVVQDEFQRTISPTPP 249
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 67.6 bits (165), Expect = 4e-14
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 20/115 (17%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS---WKTLNKGQIRPEEN 398
PP +VT +++ V + W P I + ++YR G W+T N
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTN--------- 53
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
+ S ++ L P TY F+++ D SN
Sbjct: 54 -------DNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101
Score = 53.4 bits (128), Expect = 4e-09
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG-NKDWLPI--------- 294
+ P ++ SV L W+ + G + + + YR G K+W
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPI-VIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 295 --PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 332
S ++ L P TY F+++ D SN
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 67.3 bits (165), Expect = 4e-14
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P P ++ T SVTL W G + Y I YR G + V +T+
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQE-VDGVATTRY 63
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+I L+P + Y F+V+ N +G G S V +T G + GP
Sbjct: 64 SIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRART-GEQSGPS 104
Score = 65.8 bits (161), Expect = 1e-13
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 29/118 (24%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P PP ++ VTE V ++W + + YY I
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGI------------------------ 41
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+YR G + V +T+ +I L+P + Y F+V+ N +G G S V +T
Sbjct: 42 -QYRAAGTEGPFQE-VDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRART 97
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 70.6 bits (172), Expect = 4e-14
Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 34/228 (14%)
Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFS-VTLEWLPGYSGGPD----LKQN 278
+ + +Q+ ++ P + E + W G ++
Sbjct: 8 AAILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLF 67
Query: 279 YVIWYREQGNKDWLPIPVTP---PGSTQITINRLTPATTYEFQVVGKNELGDGM---LSN 332
Y ++ ++W P S + + A Y ++ D +
Sbjct: 68 YTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDE 127
Query: 333 IVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
IV NVS+T ++ + W+ P + +++Y +
Sbjct: 128 IVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEY------------E 175
Query: 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
++ Y+E W + +T + + L YE +V
Sbjct: 176 LQ---------YKEVNETKWKMMDPIL--TTSVPVYSLKVDKEYEVRV 212
Score = 43.3 bits (101), Expect = 6e-05
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 219 FGYYECVVSNEVATIVQAAQLVVEGTQPHAPY-------NITGVATEFSVTLEWLPGYS- 270
Y +++ T+ + V E QP P N++ + + W +
Sbjct: 104 AIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNA 163
Query: 271 --GGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
+ Y + Y+E W + +T + + L YE +V
Sbjct: 164 DIQKGWMVLEYELQYKEVNETKWKMMDPIL--TTSVPVYSLKVDKEYEVRV 212
Score = 30.2 bits (67), Expect = 1.2
Identities = 13/119 (10%), Positives = 28/119 (23%), Gaps = 24/119 (20%)
Query: 334 VVVKTKGPKPGPPRNVS-VTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
V K G P+ + F W + + + + +
Sbjct: 21 VNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLF------------- 67
Query: 393 IRPEENSYLGEYREQGNKDWLPIPVTP---PGSTQITINRLTPATTYEFQVVGKNELGD 448
Y ++ ++W P S + + A Y ++ D
Sbjct: 68 -------YTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVD 119
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 67.4 bits (165), Expect = 4e-14
Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 236 AAQLVVEGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
+ P P T+ SVTL W PG G Y+I Q +
Sbjct: 7 GKNYDLSDL-PGPPSKPQVTDVTKNSVTLSWQPGTPGTLPA-SAYIIEAFSQSVSNSWQT 64
Query: 295 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG 344
+T T+ L P T Y F V N G +S+ V + GP G
Sbjct: 65 VANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117
Score = 62.8 bits (153), Expect = 2e-12
Identities = 26/109 (23%), Positives = 32/109 (29%), Gaps = 26/109 (23%)
Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
PGPP VT+V V +SWQP Y+I
Sbjct: 15 LPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYII----------------------- 51
Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
E Q + +T T+ L P T Y F V N G
Sbjct: 52 --EAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLS 98
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 70.7 bits (172), Expect = 5e-14
Identities = 24/162 (14%), Positives = 39/162 (24%), Gaps = 34/162 (20%)
Query: 111 NGSLLFTRVNQNHQGRYTCTPYN-----AHGTQGSSGQMEVLVRKPPA-FTIKPEAMYQR 164
+L T V+ GRY C G S ++V P + + Q
Sbjct: 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQV 148
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDG------------------------VALPKN 200
G + M C +TW +
Sbjct: 149 DEGNDITMTCPC---TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG 205
Query: 201 RVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
R G N+ I + D G C ++ + +
Sbjct: 206 RASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 64.5 bits (156), Expect = 7e-12
Identities = 26/168 (15%), Positives = 39/168 (23%), Gaps = 31/168 (18%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-AKVTFTPTVQYLP 69
V TL + V D G Y C+V+ + +V T + V
Sbjct: 83 SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVST 142
Query: 70 FRLQGVVQ-------CHIKANPTFQYVTWTKDKRLLEPYQTKD----------------- 105
+ V + C VTW E Y+T
Sbjct: 143 AEVVQVDEGNDITMTCPCTDCANAN-VTWYTGPTFFENYETGTYQPLANKNQFGITWFSS 201
Query: 106 -----IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
+L+ GR C G + +L
Sbjct: 202 EIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 49.5 bits (117), Expect = 6e-07
Identities = 29/213 (13%), Positives = 52/213 (24%), Gaps = 50/213 (23%)
Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------------- 198
+ G +V++ C Q A TQ P I+W +
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
Query: 199 -----------KNRVKIV---GGNITIEGLRRVDFGYYECVVSN-----EVATIVQAAQL 239
R + + + + D G Y C V+ E ++ L
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127
Query: 240 VVEGTQPHAPYNITG-----VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
V G P +++ V +T+ + V WY +
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTC--PCTDCA---NANVTWYTGPTFFENYET 182
Query: 295 PVTPPGSTQITINR--LTPATTYEFQVVGKNEL 325
P + + + G L
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNL 215
Score = 45.7 bits (107), Expect = 1e-05
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 5 VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ R LVI D+G CE++ G GE A +
Sbjct: 200 SSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD-RSSTI 247
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 69.4 bits (169), Expect = 6e-14
Identities = 34/214 (15%), Positives = 59/214 (27%), Gaps = 26/214 (12%)
Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN 307
P N+ + F L+W L + Y + T T+ +
Sbjct: 4 PPENVRMNSVNFKNILQWESPAFAKGQL--TFTAQYLSYRIFQDKCMQTT---LTECDFS 58
Query: 308 RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLE 367
L+ + +V + I GPP + V + + + + P
Sbjct: 59 SLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPP-GMQVEVLADCLHMRFLAPKI 117
Query: 368 RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITI 427
+ + +Y +Y +QG + I +
Sbjct: 118 ENEYETWTMKNVYNS---------------WTYNVQYWKQGTDEKFQITPQ---YDFEVL 159
Query: 428 NRLTPATTYEFQVVGKNELGD--GMLSNIVVVKT 459
L P TTY QV G + G S V +T
Sbjct: 160 RNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQT 193
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 66.2 bits (162), Expect = 8e-14
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 26/121 (21%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
P V+ ++ W + IQ + I YR S
Sbjct: 5 ITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDN------------- 51
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+ D+ V I L P T+Y+ ++ NE G+ SN+++ +T
Sbjct: 52 ---------DSDYKRDVVEGS-KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Query: 460 K 460
K
Sbjct: 102 K 102
Score = 57.4 bits (139), Expect = 1e-10
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 14/101 (13%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQG---NKDWLPIPVTP 298
P+ A ++ + L+W P N + I+YR + D+ V
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYI----PSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
I L P T+Y+ ++ NE G+ SN+++ +TK
Sbjct: 63 S-KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 67.0 bits (163), Expect = 1e-13
Identities = 31/137 (22%), Positives = 44/137 (32%), Gaps = 21/137 (15%)
Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
++H S + F P + QR VG SV++HCEA G+ P I W
Sbjct: 3 SSHHHHHHSSGLVPRGSHMAGFVQAPLSQ-QRWVGGSVELHCEAV---GSPVPEIQWWFE 58
Query: 193 DGVALPKNRVKIVG-----------------GNITIEGLRRVDFGYYECVVSNEVATIVQ 235
G I+I+ L D G YEC SN+
Sbjct: 59 GQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL 118
Query: 236 AAQLVVEGTQPHAPYNI 252
V+ + A +
Sbjct: 119 TRAPRVKWVRAQAVVLV 135
Score = 43.5 bits (102), Expect = 2e-05
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
+ T+ I+ + +D+G Y C SN V++ + V
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNH-LTRAPRVKW-VRAQAVVLVL 136
Score = 39.2 bits (91), Expect = 6e-04
Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 15/91 (16%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTK--------------DIVVMQNGSLLFTRVNQN 122
C +P + + W + + ++ ++ + +
Sbjct: 42 HCEAVGSPVPE-IQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEE 100
Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153
G Y C N + V + A
Sbjct: 101 DTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 66.2 bits (162), Expect = 1e-13
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 28/137 (20%)
Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDG 383
G S + V+ + P P V V +++ + + W+ LE +++ Y I+Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE--KIVESYQIRYWAAH 58
Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
+ E + + + L P T Y +V
Sbjct: 59 D---------KEEAANRV---------------QVTSQEYSARLENLLPDTQYFIEVGAC 94
Query: 444 NELGDGMLSNIVVVKTK 460
N G G S+++ TK
Sbjct: 95 NSAGCGPPSDMIEAFTK 111
Score = 52.0 bits (125), Expect = 1e-08
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS-TQIT 305
AP + + +++ W ++Y I Y +K+ V
Sbjct: 21 APTEVGVKVLSSSEISVHWEHVLEKIV---ESYQIRYWAAHDKEEAANRVQVTSQEYSAR 77
Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ L P T Y +V N G G S+++ TK GP
Sbjct: 78 LENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTK-KASGPS 117
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 66.0 bits (161), Expect = 1e-13
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 26/121 (21%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQ--PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
P VN ++ W P + I + I YR S
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDN------------- 55
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+ D+ V +I+ L P T+Y+ ++ NE G+ SN+++ +T
Sbjct: 56 ---------DSDYKKDMVEGD-RYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET 105
Query: 460 K 460
K
Sbjct: 106 K 106
Score = 58.7 bits (142), Expect = 5e-11
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 248 APYNITGVA-TEFSVTLEW---LPGYSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPG 300
PY A E ++ L+W + P + I+YR + D+ V
Sbjct: 11 GPYITFTDAVNETTIMLKWMYIPASNNNTPIHG--FYIYYRPTDSDNDSDYKKDMVEGD- 67
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+I+ L P T+Y+ ++ NE G+ SN+++ +TK
Sbjct: 68 RYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 67.2 bits (164), Expect = 1e-13
Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 15/149 (10%)
Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVL----VRKPPAFTIKPEAMYQRKVGESVDMHCE 175
+ G +P NA+ + +E + P FT M G + C+
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVV-EGSAARFDCK 64
Query: 176 AQEAEGTQKPTITWQRRDGVALPKN-RVKIV---GGNIT--IEGLRRVDFGYYECVVSNE 229
+ G P + W +D + ++ +I GN + I + D Y C N
Sbjct: 65 VE---GYPDPEVMW-FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120
Query: 230 VATIVQAAQLVVEGTQPHAPYNITGVATE 258
+ A+L+VE G E
Sbjct: 121 LGEATCTAELLVETMGKEGEGEGEGEEDE 149
Score = 48.7 bits (116), Expect = 4e-07
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 7/144 (4%)
Query: 22 INPVGSDDSGLYMCEVSNGIGEPQA---AQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC 78
++ + S +N + A A T T + C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 79 HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNAHG 136
++ P + V W KD ++ + I + G SL + V + +YTC N+ G
Sbjct: 64 KVEGYPDPE-VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Query: 137 TQGSSGQMEVLVR-KPPAFTIKPE 159
+ ++ V K + E
Sbjct: 123 EATCTAELLVETMGKEGEGEGEGE 146
Score = 41.8 bits (98), Expect = 9e-05
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 11 RVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58
++ ++G +L I+ V DD Y C+ N +GE A L VE K
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT-CTAELLVETMGK 137
Score = 30.2 bits (68), Expect = 0.76
Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 31/161 (19%)
Query: 211 IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPY------NIT---GVATEFSV 261
+ G + + +N+V + V E PY ++ G A F
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 262 TLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP--------PGSTQITINRLTPAT 313
+ G PD + V+W+ KD P+ + G+ +TI+ +
Sbjct: 64 KV------EGYPDPE---VMWF-----KDDNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109
Query: 314 TYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV 354
++ N LG+ + ++V+T G + E
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEE 150
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 65.2 bits (159), Expect = 2e-13
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 26/119 (21%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P ++ VT + + ++W P + + Y +KY G+ + ++ EN
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRA- 66
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
+ L +Y QV ++E G G +T+
Sbjct: 67 ------------------------ELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ 101
Score = 62.5 bits (152), Expect = 2e-12
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
P A +I + S++L W P G L Y + Y E+G + + +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLD--YEVKYHEKGAEGPSSVRFLKTSENR 65
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ L +Y QV ++E G G +T+ GP
Sbjct: 66 AELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ-LDSGPS 107
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 66.9 bits (163), Expect = 3e-13
Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 24/150 (16%)
Query: 89 VTWTKDKRLLEPYQTKDIV--------VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140
V W + L+ ++ K ++ NG L + ++ G Y T Y+ +GT+
Sbjct: 30 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89
Query: 141 SGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN 200
+ +++ + + + KP ++ + + C E + + L
Sbjct: 90 NKALDLRILEMVS---KPMIYWE---CSNATLTC---EVLEGTDVELKL-YQGKEHLRSL 139
Query: 201 RVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
R K T+ ++C N V
Sbjct: 140 RQK------TMSYQWTNLRAPFKCKAVNRV 163
Score = 56.1 bits (135), Expect = 2e-09
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 15/131 (11%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
I +G L I + DDSG Y V + G + L++ V+ P + +
Sbjct: 54 AFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT-RILNKALDLRILEMVS-KPMIYWEC- 110
Query: 71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
+ C + + + K L + K + + N + + C
Sbjct: 111 -SNATLTCEVLEGTDVEL-KLYQGKEHLRSLRQKTM----------SYQWTNLRAPFKCK 158
Query: 131 PYNAHGTQGSS 141
N +
Sbjct: 159 AVNRVSQESEM 169
Score = 44.6 bits (105), Expect = 2e-05
Identities = 21/162 (12%), Positives = 52/162 (32%), Gaps = 26/162 (16%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITW----------QRRDGVALPKNRVKIVG-GNITIEGL 214
+G ++++ + W +R+ L +I+ G++ I+ L
Sbjct: 10 LGHGINLNIPNF-QMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL 68
Query: 215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPD 274
R D G Y V + T + L + + + I + ++T E G D
Sbjct: 69 TRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCE----VLEGTD 124
Query: 275 LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316
++ + Y+ + + ++ ++
Sbjct: 125 VE---LKLYQGK-------EHLRSLRQKTMSYQWTNLRAPFK 156
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 65.0 bits (159), Expect = 3e-13
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P + + W S G D+ Y + + +
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDV-TEYRLEWGGVEGSMQICYCGP---GLSY 63
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
I L+PATTY +V + +G G S +V T
Sbjct: 64 EIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102
Score = 64.2 bits (157), Expect = 4e-13
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 29/119 (24%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P + VT + ++W+ PL + + Y +++ +
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQI------------- 54
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
I L+PATTY +V + +G G S +V T
Sbjct: 55 ---------------CYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 98
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 65.5 bits (160), Expect = 3e-13
Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 27/135 (20%)
Query: 331 SNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRTDGSWK 386
S + T+ P GPP +V++ V + + ++W+ P + +I+ Y I YR +
Sbjct: 3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSP-- 60
Query: 387 TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS-TQITINRLTPATTYEFQVVGKNE 445
N + + + G T++ L Y V N
Sbjct: 61 --------------------GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNR 100
Query: 446 LGDGMLSNIVVVKTK 460
G G S+ + T
Sbjct: 101 AGTGPSSSEINATTL 115
Score = 52.8 bits (127), Expect = 7e-09
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 16/108 (14%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYRE---QGNKDWLPIPVT 297
P ++T T S+ + W P + + Y I YRE N + + +
Sbjct: 18 PPMDVTLQPVTSQSIQVTWKA-----PKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72
Query: 298 PPGS-TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
G T++ L Y V N G G S+ + T P
Sbjct: 73 ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 64.7 bits (158), Expect = 3e-13
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-- 205
KP +M GES C+ G PT+TW R+ V R ++
Sbjct: 11 TTLAARILTKPRSMT-VYEGESARFSCDTD---GEPVPTVTWLRKGQVLSTSARHQVTTT 66
Query: 206 --GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
I ++ D G Y VV N L ++
Sbjct: 67 KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 45.4 bits (108), Expect = 2e-06
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
K T I+ V + D G Y V N G+ +A L ++
Sbjct: 67 KYKSTFEISSVQASDEGNYSVVVENSEGKQEAE-FTLTIQ 105
Score = 43.5 bits (103), Expect = 1e-05
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAH 135
C P VTW + ++L + + + + V + +G Y+ N+
Sbjct: 35 SCDTDGEPVPT-VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 93
Query: 136 GTQGSSGQMEV 146
G Q + + +
Sbjct: 94 GKQEAEFTLTI 104
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 64.3 bits (157), Expect = 4e-13
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
GSSG + V P+F+ + G+ + C + GT P ITW +G +
Sbjct: 1 GSSGSSGMEV--APSFSSVLKDCA-VIEGQDFVLQCSVR---GTPVPRITW-LLNGQPIQ 53
Query: 199 KNRVKIVGGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
R G I+ D G Y C+ N + + +A + V
Sbjct: 54 YARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 47.7 bits (114), Expect = 2e-07
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
QC ++ P + +TW + + ++ + L G YTC NA G
Sbjct: 32 QCSVRGTPVPR-ITWLLNGQPIQY--ARSTCEAGVAELHIQDALPEDHGTYTCLAENALG 88
Query: 137 TQGSSGQMEV 146
S + V
Sbjct: 89 QVSCSAWVTV 98
Score = 41.2 bits (97), Expect = 5e-05
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
L I +D G Y C N +G+ A++ V
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVS-CSAWVTV 98
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 68.8 bits (167), Expect = 4e-13
Identities = 35/224 (15%), Positives = 65/224 (29%), Gaps = 34/224 (15%)
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQGNKDWLPIPVTPPG 300
P + A + ++ + PG + Y + + + I
Sbjct: 101 QIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENI--- 157
Query: 301 STQITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKT-KGPKPGPPRNVSVTEVNNG 357
++ I +L+P TTY +V G+ S + +KT + PP N+ V+ N
Sbjct: 158 YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQN 217
Query: 358 FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417
+V+ W + +L + L K W IP
Sbjct: 218 YVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK---------------------WKQIPD 256
Query: 418 TPPGSTQ--ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
T + + Y +V + S + T
Sbjct: 257 CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 300
Score = 64.6 bits (156), Expect = 1e-11
Identities = 22/206 (10%), Positives = 57/206 (27%), Gaps = 28/206 (13%)
Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGSTQI 304
+P + + + L W ++ + Y++ G +W+ +
Sbjct: 6 SPQKVEVDIIDDNFILRWNRSDESVGNV--TFSFDYQKTGMDNWIKLSGCQNITSTKCNF 63
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQP 364
+ +L + ++ + E + P V + + VI P
Sbjct: 64 SSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 122
Query: 365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQ 424
+ + + + + +Y + + I ++
Sbjct: 123 GTKDSVMWALDGLSF-------------------TYSLVIWKNSSGVEERIENI---YSR 160
Query: 425 ITINRLTPATTYEFQVVGKNELGDGM 450
I +L+P TTY +V +
Sbjct: 161 HKIYKLSPETTYCLKVKAALLTSWKI 186
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 64.0 bits (156), Expect = 4e-13
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVG 206
+P ++ E+ G+ + + C ++ +I W RDGV L NR +I G
Sbjct: 6 QAQPWGVPVEVES-LLVHPGDLLQLRCRLRDD----VQSINW-LRDGVQLVESNRTRITG 59
Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
+ + D G Y CV S+ + + V
Sbjct: 60 EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 43.6 bits (103), Expect = 6e-06
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C ++ + Q + W +D L + + G Y C + G
Sbjct: 30 RCRLRDDV--QSINWLRDGVQLVESNR---TRITGEEVEVRDSIPADSGLYACVTSSPSG 84
Query: 137 TQGSSGQMEV 146
+ + + V
Sbjct: 85 SDTTYFSVNV 94
Score = 41.3 bits (97), Expect = 4e-05
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
R I + + DSGLY C S+ G +NV
Sbjct: 54 RTRIT-GEEVEVRDSIPADSGLYACVTSSPSGSDTTY-FSVNV 94
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 65.1 bits (159), Expect = 5e-13
Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 29/139 (20%)
Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRT 381
G S V V+T P P+N+S+ N+ + I WQPP I Y I+YR
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 441
+ + + I L T Y F+V
Sbjct: 61 ASRKSDVTE-------------------------TLVSGTQLSQLIEGLDRGTEYNFRVA 95
Query: 442 GKNELGDGMLSNIVVVKTK 460
G G ++ + +T
Sbjct: 96 ALTINGTGPATDWLSAETF 114
Score = 64.3 bits (157), Expect = 8e-13
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIPVTPPG 300
AP N++ S+ + W P P Y I YR+ K + +
Sbjct: 21 APQNLSLEVRNSKSIMIHWQP-----PAPATQNGQITGYKIRYRKASRKSDVTETLVSGT 75
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
I L T Y F+V G G ++ + +T R V+ ++G
Sbjct: 76 QLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEVSGPSSG 132
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 64.3 bits (157), Expect = 5e-13
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 246 PHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P P + + L+W P G L Y + Y I
Sbjct: 8 PGRPTMMISTTAMNTALLQWHPPKELPGELL--GYRLQYCRADEARPNTIDFGKD-DQHF 64
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
T+ L TTY F++ KN G G + + GP
Sbjct: 65 TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDL-SGPS 105
Score = 60.9 bits (148), Expect = 9e-12
Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 26/122 (21%)
Query: 338 TKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEE 397
+ PG P + T N ++ W PP E + Y +
Sbjct: 3 SGSSGPGRPTMMISTTAMNTALLQWHPPKELPGELLGYRL-------------------- 42
Query: 398 NSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
+Y I T+ L TTY F++ KN G G +
Sbjct: 43 -----QYCRADEARPNTIDFGKD-DQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR 96
Query: 458 KT 459
Sbjct: 97 TP 98
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 67.0 bits (163), Expect = 5e-13
Identities = 23/197 (11%), Positives = 54/197 (27%), Gaps = 34/197 (17%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST---QITINRLTPATTYE 316
T EW + + ++ IP G+ + ++ + A Y
Sbjct: 16 ISTCEWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYT 75
Query: 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG-FVISWQPPLERASLIQY- 374
+ +L ++ KP P N++V + +++W P + +
Sbjct: 76 LDLWAGQQLL----WKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNH 131
Query: 375 --YLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP 432
Y + ++ + E S +I + L
Sbjct: 132 LTYAVNIWSENDPADFRIYNVTYLEPSL-----------------------RIAASTLKS 168
Query: 433 ATTYEFQVVGKNELGDG 449
+Y +V + +
Sbjct: 169 GISYRARVRAWAQAYNT 185
Score = 42.3 bits (99), Expect = 1e-04
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 245 QPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQN--YVIWYREQGNKDWLPIP--VTPP 299
+P AP N+T ++ L W Y L + Y + + + I
Sbjct: 97 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 156
Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDG 328
S +I + L +Y +V + +
Sbjct: 157 PSLRIAASTLKSGISYRARVRAWAQAYNT 185
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 64.3 bits (157), Expect = 5e-13
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 246 PHAPYNITGV-ATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
P + T +VTL+W P Y+GG + +Y++ R+ N WL + +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKI-TSYIVEKRDLPNGRWLKANFSNILENE 69
Query: 304 ITINRLTPATTYEFQVVGKNELGDG----MLSNIVVVK 337
T++ LT YEF+V+ KN G S+ + +
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
Score = 63.1 bits (154), Expect = 1e-12
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 31/122 (25%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
PP + V + W P I Y++
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIV----------------------- 47
Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG----MLSNIVV 456
E R+ N WL + + T++ LT YEF+V+ KN G S+ +
Sbjct: 48 --EKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAIT 105
Query: 457 VK 458
+
Sbjct: 106 CR 107
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 64.3 bits (157), Expect = 5e-13
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----G 206
P PE + + GESV++ + GTQ T TW + +K+ G
Sbjct: 7 GPQIIQFPEDQ-KVRAGESVELFGKVT---GTQPITCTWMKFRKQIQESEHMKVENSENG 62
Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
+TI R+ G Y +V N++ + L V P P
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK-PDPP 104
Score = 46.2 bits (110), Expect = 1e-06
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF-TRVNQNHQGRYTCTPYN 133
+ + TW K ++ ++ + + +NGS L Q H G YT N
Sbjct: 26 ELFGKVTGTQPIT-CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 84
Query: 134 AHGTQGSSGQMEVLVR-KPPAFTIKPEA 160
G++ + + V+ + PPA T P
Sbjct: 85 KLGSRQAQVNLTVVDKPDPPAGT--PSG 110
Score = 42.7 bits (101), Expect = 2e-05
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPT 64
+ ++ L I + G Y V N +G QA L V + P TP+
Sbjct: 53 HMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKPDPPAGTPS 109
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 64.4 bits (157), Expect = 6e-13
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 246 PHAPYN--ITGVATEFSVTLEW-LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
P P + G S + W P +GG + YV+ E N + + +
Sbjct: 18 PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATI-NKYVVEMAEGSNGNKW-EMIYSGATR 75
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ +RL P Y +V ++ G +S ++V+T GP
Sbjct: 76 EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP-AVSGPS 118
Score = 57.8 bits (140), Expect = 1e-10
Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 29/137 (21%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTE--VNNGFVISWQPPLE-RASLIQYYLIKYRTD 382
G S +V T KPG P SV ++ F I+W PP + + I Y+++
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEG 60
Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
+ W I + + +RL P Y +V
Sbjct: 61 SNGNK------------------------WEMIYSGA--TREHLCDRLNPGCFYRLRVYC 94
Query: 443 KNELGDGMLSNIVVVKT 459
++ G +S ++V+T
Sbjct: 95 ISDGGQSAVSESLLVQT 111
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 69.3 bits (168), Expect = 6e-13
Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 37/225 (16%)
Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT-- 305
P NI + L+W Y+ Q ++ + ++ + L P +
Sbjct: 209 PPENIEVSVQNQNYVLKWDYTYANMTFQVQ-WLHAFLKRNPGNHLYKWKQIPDCENVKTT 267
Query: 306 ----INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVIS 361
+ Y +V + S + T+ P ++ +++ F I
Sbjct: 268 QCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIY 327
Query: 362 WQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
P +IQ Y + Y + E + I
Sbjct: 328 IGAPKQSGNTPVIQDYPLIYEI---------------------IFWENTSNAERKIIEK- 365
Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGD----GMLSNIVVVKTK 460
T +T+ L P T Y + + S+ V KTK
Sbjct: 366 --KTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTK 408
Score = 61.2 bits (147), Expect = 3e-10
Identities = 24/204 (11%), Positives = 58/204 (28%), Gaps = 28/204 (13%)
Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGSTQI 304
+P + + + L W ++ + Y++ G +W+ +
Sbjct: 10 SPQKVEVDIIDDNFILRWNRSDESVGNV--TFSFDYQKTGMDNWIKLSGCQNITSTKCNF 67
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQP 364
+ +L + ++ + E + + GPP V + + VI P
Sbjct: 68 SSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPE-VHLEAEDKAIVIHISP 126
Query: 365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQ 424
+ + + + + Y + + I ++
Sbjct: 127 GTKDSVMWALDGLSFT-------------------YSLVIWKNSSGVEERIENI---YSR 164
Query: 425 ITINRLTPATTYEFQVVGKNELGD 448
I +L+P TTY +V
Sbjct: 165 HKIYKLSPETTYCLKVKAALLTSW 188
Score = 48.5 bits (114), Expect = 2e-06
Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 35/226 (15%)
Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGG-----PDLKQNYVIWYREQGNKDWLPIPVTP 298
Q P + A + ++ + PG L Y + + + I
Sbjct: 104 AQIGPP-EVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENI- 161
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKTKGPKPGPPRNVSVTEVN 355
++ I +L+P TTY +V + T + PP N+ V+ N
Sbjct: 162 --YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN 219
Query: 356 NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
+V+ W + +L + L K W I
Sbjct: 220 QNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK---------------------WKQI 258
Query: 416 PVTPPGSTQ--ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
P T + + Y +V + S + T
Sbjct: 259 PDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 304
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 63.1 bits (154), Expect = 8e-13
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN-- 208
P + + K G + ++ + G PT TW D A + + +
Sbjct: 2 KPKILTASRKI-KIKAGFTHNLEVDFI---GAPDPTATWTVGDSGAALAPELLVDAKSST 57
Query: 209 --ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
I +R D G Y+ V NE+ +++V+
Sbjct: 58 TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 41.9 bits (99), Expect = 2e-05
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF-TRVNQNHQGRYTCTPYN 133
++ P TWT + + + +F + G Y N
Sbjct: 21 NLEVDFIGAPDPT-ATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79
Query: 134 AHGTQGSSGQMEVLVR 149
G EV+V+
Sbjct: 80 ELGE--DEAIFEVIVQ 93
Score = 38.5 bits (90), Expect = 4e-04
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 7 SLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+L +++ ++ DSG Y +V N +GE A + V+
Sbjct: 44 ALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 64.3 bits (157), Expect = 8e-13
Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 27/139 (19%)
Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRT 381
G S + +T P PP+ V + + V +SW PP + +I Y + Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 441
++ + + + L T Y V
Sbjct: 61 VDG-----------------------EDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVR 97
Query: 442 GKNELGDGMLSNIVVVKTK 460
++G G S+ V+V+T
Sbjct: 98 AHTDVGPGPESSPVLVRTD 116
Score = 59.7 bits (145), Expect = 3e-11
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQGNKDWLPIPV--TPP 299
P + V+ +V + W+P P +N Y + Y +D V
Sbjct: 21 PPQKVMCVSMGSTTVRVSWVPP----PADSRNGVITQYSVAYEAVDGEDRGRHVVDGISR 76
Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVT 352
+ + L T Y V ++G G S+ V+V+T P PPR V
Sbjct: 77 EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESG 130
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 63.2 bits (154), Expect = 1e-12
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
G+ GSSG P F P + + G+ M C+ G P ++WQ
Sbjct: 1 GSSGSSGF-------RPHFLQAPGDL-TVQEGKLCRMDCKV---SGLPTPDLSWQLDGKP 49
Query: 196 ALPKNRVKIV---GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
P + K++ G + IE + D G Y C+ +N + +LVV + P
Sbjct: 50 VRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA-KESGP 107
Score = 46.6 bits (111), Expect = 7e-07
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
C + PT ++W D + + P ++V +NG SL+ V G YTC N
Sbjct: 30 DCKVSGLPTPD-LSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNR 88
Query: 135 HGTQGSSGQMEVLVRKPP 152
G S ++ V ++
Sbjct: 89 AGQNSFSLELVVAAKESG 106
Score = 43.9 bits (104), Expect = 7e-06
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 11 RVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+++++++G +L+I PV S D+G+Y C +N G+ L V
Sbjct: 57 KMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNS-FSLELVVA 101
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 63.1 bits (154), Expect = 1e-12
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 246 PHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P P + G + L W P GG + Y + + V +
Sbjct: 11 PCLPPRLQGRPKAKEIQLRWGPPLVDGGSPI-SCYSVEMSPIEKDEP--REVYQGSEVEC 67
Query: 305 TINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG 344
T++ L P TY F++ N++G G +I GP G
Sbjct: 68 TVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGPSSG 110
Score = 54.3 bits (131), Expect = 2e-09
Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 30/120 (25%)
Query: 343 PGPPRNVSVTEV--NNGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
PGP + + W PPL + S I Y +
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSV---------------------- 46
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
E + V + T++ L P TY F++ N++G G S + T
Sbjct: 47 ---EMSPIEKDEP--REVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 101
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 62.5 bits (152), Expect = 2e-12
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 244 TQPHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
P P S TL W Y++ + + + V
Sbjct: 8 PVPATPILQLEECCTHNNSATLSWKQPPLSTVPA-DGYILELDDGNGGQFREVYVGK--E 64
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
T T++ L +TY +V N+ G S +V++T
Sbjct: 65 TMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 61.7 bits (150), Expect = 4e-12
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 29/127 (22%)
Query: 336 VKTKGPKPGPPR-NVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI 393
+ GP P P + +N +SW+ P Y++
Sbjct: 3 SGSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYIL---------------- 46
Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
E + + + V T T++ L +TY +V N+ G S
Sbjct: 47 ---------ELDDGNGGQFREVYVGK--ETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK 95
Query: 454 IVVVKTK 460
+V++T
Sbjct: 96 TLVLQTS 102
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 61.6 bits (150), Expect = 2e-12
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210
++P + G ++ + C A G+ P W ++ + L
Sbjct: 3 KLQICVEPTSQK-LMPGSTLVLQCVA---VGSPIPHYQW-FKNELPLTHET----KKLYM 53
Query: 211 IEGLRRVDFGYYECVVSNEVATIV-QAAQLVVE 242
+ + G Y C V N+ + + +++++
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
Score = 47.7 bits (114), Expect = 2e-07
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL 115
++ PT Q L V+QC +P Y W K++ L ++T +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY-QWFKNELPL-THET-------KKLYM 53
Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF 154
V+ HQG Y C YN +Q S +E+++ +
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRDSQDSKK-VEIIIDELNNL 91
Score = 43.5 bits (103), Expect = 7e-06
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
++ V + G Y C V N + + + ++
Sbjct: 49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 88
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 64.3 bits (156), Expect = 4e-12
Identities = 25/232 (10%), Positives = 59/232 (25%), Gaps = 48/232 (20%)
Query: 242 EGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR-----EQGNKDWLPIPV 296
E AP ++ ++T L W P + G + Y + Y+ + W+P
Sbjct: 3 EVAILPAPQQLSVLSTNMKHLLMWSPVIAPGETV--YYSVEYQGEYESLYTSHIWIPSS- 59
Query: 297 TPPGSTQITI------NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVS 350
+ + +T Y +V S + + +
Sbjct: 60 ---WCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGME 116
Query: 351 VTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNK 410
+T+ VI + + ++ + Y +
Sbjct: 117 ITKDGFHLVIELEDLGPQ---FEFLVA--------------------------YWRREPG 147
Query: 411 DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKTK 460
+ + G + + + P Y + + S V+ +
Sbjct: 148 AEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQ 199
Score = 40.8 bits (95), Expect = 4e-04
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 251 NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLT 310
IT + LE L GP + W RE G ++ + + G + + +
Sbjct: 116 EITKDGFHLVIELEDL-----GPQFEFLVAYWRREPGAEEH--VKMVRSGGIPVHLETME 168
Query: 311 PATTYEFQVVGKNELGD--GMLSNIVVVKTKG 340
P Y + + S V+ +G
Sbjct: 169 PGAAYCVKAQTFVKAIGRYSAFSQTECVEVQG 200
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 61.7 bits (150), Expect = 4e-12
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 27/118 (22%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P + + +SW P + +I Y I+Y
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEH----------------- 50
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
+ + + I+ L P Y QV + G G S + +T
Sbjct: 51 ---------NEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT 99
Score = 57.8 bits (140), Expect = 9e-11
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
P + V+ T S+TL W P G +Y I Y E+ + ++ + +
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGI--ILDYEIRYYEKEHNEFNSS-MARSQTNT 64
Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
I+ L P Y QV + G G S + +T P +
Sbjct: 65 ARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT--LTDSGPSS 107
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 61.3 bits (149), Expect = 5e-12
Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 26/118 (22%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P + V + ISW ++YY I Y G + + +
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTV-------- 59
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
P + TI+ L P Y V + G N +
Sbjct: 60 -----------------PGYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100
Score = 56.7 bits (137), Expect = 2e-10
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 242 EGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
+ P + V T S+ + W YS ++ + Y I Y E G + P
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNV-KYYRITYGETGGDSPVQEFTVPGY 62
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
+ TI+ L P Y V + G N +
Sbjct: 63 YSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 61.8 bits (150), Expect = 6e-12
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKD----WLPIPVTPPGSTQITINRLTPATTY 315
+V + W P Q Y + YR+ W + P + L TY
Sbjct: 31 TVQVTWTV--DRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTY 88
Query: 316 EFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
E +V GM S V+T + GP
Sbjct: 89 EIKVRPYFNEFQGMDSESKTVRTT-EESGPS 118
Score = 56.4 bits (136), Expect = 4e-10
Identities = 25/126 (19%), Positives = 34/126 (26%), Gaps = 31/126 (24%)
Query: 334 VVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI 393
V+V+ P P V V +W + IQ Y + YR
Sbjct: 17 VLVRLHNPVVLTPTTVQV---------TWTVD-RQPQFIQGYRVMYRQTSGL-------- 58
Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
Q W + P + L TYE +V GM S
Sbjct: 59 -------------QATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSE 105
Query: 454 IVVVKT 459
V+T
Sbjct: 106 SKTVRT 111
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 60.5 bits (147), Expect = 9e-12
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 29/106 (27%)
Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
PP N+ VT + V++WQPP+ I+ L+
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPILP---IEGILV-------------------------T 35
Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
+ + + T +T+ L P TTYE ++V +N
Sbjct: 36 FGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYS 81
Score = 57.4 bits (139), Expect = 1e-10
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK-QNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
P+NI T + + W P P L + ++ + + + T +T
Sbjct: 4 PPFNIKVTNITLTTAVVTWQP-----PILPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 306 INRLTPATTYEFQVVGKNELGDG 328
+ L P TTYE ++V +N
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYS 81
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 60.4 bits (147), Expect = 9e-12
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 8/100 (8%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-- 205
+ P + +A G +PT W + + K+
Sbjct: 3 ISSKPVIVTGLQDT-TVSSDSVAKFAVKA---TGEPRPTAIWTKDGKAITQGGKYKLSED 58
Query: 206 GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
G I D G Y C V N ++ + +L ++
Sbjct: 59 KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 44.2 bits (105), Expect = 4e-06
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
P WTKD + + + ++ L + + + G YTCT N
Sbjct: 27 AVKATGEPRPT-AIWTKDGKAITQ--GGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN 83
Query: 134 AHGTQGSSGQMEV 146
+ G+ SS ++ +
Sbjct: 84 SAGSVSSSCKLTI 96
Score = 43.0 bits (102), Expect = 1e-05
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+ + +D L I+ + DSGLY C V N G + L ++
Sbjct: 52 KYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVS-SSCKLTIK 97
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 62.9 bits (152), Expect = 1e-11
Identities = 16/166 (9%), Positives = 40/166 (24%), Gaps = 16/166 (9%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
+ C + +W P K +L V+ ++ Y CT
Sbjct: 20 SLTCSTTGCESPF-FSWRTQIDS--PLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCE 76
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
++V + P + G+ + + C + + I +
Sbjct: 77 SRK--LEKGIQVEIYSFPKDPEIHLSGPLE-AGKPITVKCSVADVYPFDRLEIDL-LKGD 132
Query: 195 VALP---------KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231
+ + ++ +T + C +
Sbjct: 133 HLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID 178
Score = 59.4 bits (143), Expect = 2e-10
Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 13/151 (8%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
TL +NPV + Y+C + + + + + K L V
Sbjct: 53 TSTLTMNPVSFGNEHSYLCTATCESRKLEKG-IQVEIYSFPKDPEIHLSGPLEAGKPITV 111
Query: 77 QCHIKANP--TFQYVTWTKDKRLL---EPYQTKDIVVMQNGS--LLFTRVNQNHQGRYTC 129
+C + + K L+ E + D ++ S + FT V ++ C
Sbjct: 112 KCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC 171
Query: 130 TPYNAHGTQGSSGQ-----MEVLVRKPPAFT 155
S E+ V P T
Sbjct: 172 RAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202
Score = 51.3 bits (122), Expect = 1e-07
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 154 FTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGNITIE 212
PE+ Y ++G+SV + C G + P +W+ + L + +T+
Sbjct: 3 IETTPESRYLAQIGDSVSLTCST---TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMN 59
Query: 213 GLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
+ + Y C + E + + Q+ +
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPK 93
Score = 39.0 bits (90), Expect = 0.001
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA------AQAYLNVEF 55
+ + + + K + PV D + +C I E + A L V
Sbjct: 138 QEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197
Query: 56 PAKVT 60
K T
Sbjct: 198 SPKNT 202
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 60.7 bits (147), Expect = 1e-11
Identities = 21/110 (19%), Positives = 32/110 (29%), Gaps = 7/110 (6%)
Query: 242 EGTQPHAPYNITGVA-TEFSVTLEW----LPGYSGGPDLKQNYVIWYREQGNKDWLPIPV 296
T P + VA T +V + W +P +++ Y + +R +
Sbjct: 15 LSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRL-YTVRWRTSFSASA-KYKS 72
Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
S T L P T YEF V+ S T
Sbjct: 73 EDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122
Score = 59.1 bits (143), Expect = 4e-11
Identities = 23/135 (17%), Positives = 34/135 (25%), Gaps = 31/135 (22%)
Query: 331 SNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPL----ERASLIQYYLIKYRTDGSW 385
V PP V + + V +SW ++ S ++ Y +++RT S
Sbjct: 7 GFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFS- 65
Query: 386 KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 445
S T L P T YEF V+
Sbjct: 66 -------------------------ASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKN 100
Query: 446 LGDGMLSNIVVVKTK 460
S T
Sbjct: 101 RRSSTWSMTAHATTY 115
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 63.1 bits (153), Expect = 1e-11
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 11/158 (6%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
L + + L I V D+G+Y C +S G + + V P +
Sbjct: 69 RLLKDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILV 126
Query: 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT-----RVNQ 121
P + + C + P + V WT + +T + LF R+N
Sbjct: 127 VDPVTSEHELTCQAEGYPKAE-VIWTSSDHQVLSGKTTTTNS-KREEKLFNVTSTLRINT 184
Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
+ CT + + E+++ + P E
Sbjct: 185 TTNEIFYCTFRRLDPEE--NHTAELVIPELPLAHPPNE 220
Score = 60.4 bits (146), Expect = 1e-10
Identities = 30/158 (18%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 104 KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQ 163
KD + + N +L T V G Y C + G ++V P I +
Sbjct: 72 KDQLSLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKV---NAPYNKINQRILVV 127
Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP----KNRVKIVGGNITIEG---LRR 216
V ++ C+A EG K + W D L K + +
Sbjct: 128 DPVTSEHELTCQA---EGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT 184
Query: 217 VDFGYYECVVSNEVATIVQAAQLVVEGT-QPHAPYNIT 253
+ C A+LV+ H P T
Sbjct: 185 TTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERT 222
Score = 40.4 bits (94), Expect = 5e-04
Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 40/166 (24%)
Query: 154 FTIK-PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR----------RDGVALP---- 198
FT+ P+ +Y + G ++ + C+ + + G
Sbjct: 2 FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61
Query: 199 ---KNRVKIVGGNIT-------IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHA 248
+ R +++ ++ I ++ D G Y C++S + + V
Sbjct: 62 SSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKI 120
Query: 249 PYNITGVATEFS-VTL----EWLPGYSGGPDLKQNYVIWYREQGNK 289
I V S L E P + VIW
Sbjct: 121 NQRILVVDPVTSEHELTCQAEGYP---------KAEVIWTSSDHQV 157
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 60.5 bits (147), Expect = 1e-11
Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 22/134 (16%)
Query: 331 SNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRTDGSWK 386
S+ + P P NV V VN+ + W P ++ +Q Y I Y S
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 387 TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL 446
N+ I + I T + L P + Y V N
Sbjct: 62 KRNRRHIEKK------------------ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGK 103
Query: 447 GDGMLSNIVVVKTK 460
G+G S V T
Sbjct: 104 GEGPASPDRVFNTP 117
Score = 49.3 bits (118), Expect = 1e-07
Identities = 22/113 (19%), Positives = 30/113 (26%), Gaps = 19/113 (16%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIP----- 295
AP N+ + W P LK Q Y I+Y + +
Sbjct: 17 APGNVRVNVVNSTLAEVHWDP-----VPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71
Query: 296 --VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
T + L P + Y V N G+G S V T
Sbjct: 72 ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPSS 124
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 59.4 bits (144), Expect = 2e-11
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ P + VA T S+ + W S Y I Y E G + P S+
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMSSSSV--YYYRITYGETGGNSPVQEFTVPYSSS 60
Query: 303 QITINRLTPATTYEFQVVGKNELGDG 328
TI+ L+P Y V E G
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAG 86
Score = 58.2 bits (141), Expect = 6e-11
Identities = 23/108 (21%), Positives = 31/108 (28%), Gaps = 27/108 (25%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P + V +ISW P +S + YY I
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAP-MSSSSVYYYRI------------------------ 39
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
Y E G + P S+ TI+ L+P Y V E G
Sbjct: 40 -TYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSAG 86
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 59.4 bits (144), Expect = 2e-11
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 149 RKPPAFTIKPE---AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN----- 200
++ P +T + ++ +V C A G PT+ W + +G +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG---GNPMPTMRWLK-NGKEFKQEHRIGG 57
Query: 201 -RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
+V+ ++ +E + D G Y CVV NE +I L V
Sbjct: 58 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 45.5 bits (108), Expect = 1e-06
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDI--VVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
+C NP + W K+ + + V Q+ SL+ V + +G YTC N
Sbjct: 29 RCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 87
Query: 135 HGTQGSSGQMEVL 147
+G+ + ++V+
Sbjct: 88 YGSINHTYHLDVV 100
Score = 41.7 bits (98), Expect = 3e-05
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
V + +L++ V D G Y C V N G +L+V
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT-YHLDV 99
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 64.6 bits (156), Expect = 2e-11
Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 39/191 (20%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
++ W ++ ++Y+ + + S + + T + Q+
Sbjct: 233 VLSCSWEVRKEVASS--VSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQI 290
Query: 320 VGKNELGDGMLSNIVVVKTKGP--------KPGPPRNVSVTEVNNGFVISWQPPLERASL 371
+ G V + + PP ++ VT+ + + + W+ R
Sbjct: 291 PVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPP-SLQVTKDGDSYSLRWETMKMRYEH 349
Query: 372 IQY-YLIKYRTDG-SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINR 429
I + + I+YR D +WK T + + +
Sbjct: 350 IDHTFEIQYRKDTATWKDSK--------------------------TETLQNAHSMALPA 383
Query: 430 LTPATTYEFQV 440
L P+T Y +V
Sbjct: 384 LEPSTRYWARV 394
Score = 60.0 bits (144), Expect = 6e-10
Identities = 29/209 (13%), Positives = 61/209 (29%), Gaps = 46/209 (22%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKD--------------WLPIPVTPPGSTQIT 305
+T W + N + R + P P P I
Sbjct: 18 HITCRWADTQDAQRLV--NVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIP 75
Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPP 365
F LG + V T+ +P PR++ ++ + F+++W
Sbjct: 76 CQSFVVTDVDYFSFQPDRPLGT----RLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVA 131
Query: 366 LE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGST 423
L ++ + +++ Y+ + W + ++
Sbjct: 132 LGSPQSHWLSPGDLEFEV---------------------VYKRLQD-SWEDAAILLSNTS 169
Query: 424 QITIN--RLTPATTYEFQVVGKNELGDGM 450
Q T+ L P++TY +V + G +
Sbjct: 170 QATLGPEHLMPSSTYVARVRTRLAPGSRL 198
Score = 59.2 bits (142), Expect = 9e-10
Identities = 39/315 (12%), Positives = 86/315 (27%), Gaps = 57/315 (18%)
Query: 171 DMHCEAQEAEGTQKPT-ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
+ C + + Q+ +T RR L + + ++ CV+ +
Sbjct: 18 HITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQ 77
Query: 230 VATI---------------VQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPD 274
+ + + + QP P ++ + L W
Sbjct: 78 SFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQS 137
Query: 275 LKQN-----YVIWYREQGNKDWLPIPVTPPGSTQITIN--RLTPATTYEFQVVGKNELGD 327
+ + + Y+ + W + ++Q T+ L P++TY +V + G
Sbjct: 138 HWLSPGDLEFEVVYKRLQD-SWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGS 196
Query: 328 GML------SNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYR 380
+ S V ++ P+N+ SW+ E AS + + L
Sbjct: 197 RLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGL---- 252
Query: 381 TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
Y+ + + S + + T + Q+
Sbjct: 253 ----------------------FYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQI 290
Query: 441 VGKNELGDGMLSNIV 455
+ G V
Sbjct: 291 PVPDPATHGQYIVSV 305
Score = 50.0 bits (118), Expect = 1e-06
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 242 EGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
Q P ++ S +L W + + I YR+ T +
Sbjct: 318 VNIQMAPP-SLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNA 376
Query: 302 TQITINRLTPATTYEFQV 319
+ + L P+T Y +V
Sbjct: 377 HSMALPALEPSTRYWARV 394
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 59.3 bits (144), Expect = 2e-11
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV---G 206
PP F PE M G M + G P ++W +G + + K++
Sbjct: 5 PPRFIQVPENM-SIDEGRFCRMDFKV---SGLPAPDVSWYL-NGRTVQSDDLHKMIVSEK 59
Query: 207 GNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
G + E +R D G Y CV N QL V
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 47.7 bits (114), Expect = 3e-07
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
+ P V+W + R ++ ++V + G SL+F V + G Y C N
Sbjct: 26 DFKVSGLPAPD-VSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNR 84
Query: 135 HGTQGSSGQMEVLVRK 150
G + Q++VL ++
Sbjct: 85 AGEATFTVQLDVLAKE 100
Score = 42.3 bits (100), Expect = 2e-05
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 11 RVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
++++ + G +L+ V + D+G Y C N GE L+V
Sbjct: 53 KMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEAT-FTVQLDVL 97
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 59.8 bits (145), Expect = 2e-11
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 242 EGTQPHAPYNIT-GVATEFSVTLEW----LPGYSGGPDLKQNYVIWYREQGNKDWLPIPV 296
P + + + ++ + W LP + D + Y + ++ +
Sbjct: 5 SSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRY-YTVRWKTNIPANTKYK-N 62
Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ + L P T YEF V+ S T
Sbjct: 63 ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
Score = 56.4 bits (136), Expect = 3e-10
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 31/122 (25%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPL----ERASLIQYYLIKYRTDGSWKTLNKGQIRPEE 397
PP V + +++ + I+W ++ + +YY ++++T+
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP------------- 55
Query: 398 NSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
N + T + + L P T YEF V+ S
Sbjct: 56 ----------ANTKYKNANAT---TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHG 102
Query: 458 KT 459
T
Sbjct: 103 TT 104
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 59.3 bits (144), Expect = 2e-11
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 12/108 (11%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
GSSG + ++PE G +V + CE P I W + DGV LP
Sbjct: 1 GSSG---SSGLEEVQLVVEPEGG-AVAPGGTVTLTCEV---PAQPSPQIHWMK-DGVPLP 52
Query: 199 KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
+ + + D G Y CV ++ ++ + + +P
Sbjct: 53 LPP----SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 50.1 bits (120), Expect = 3e-08
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C + A P+ Q + W KD + + + L+ + QG Y+C ++
Sbjct: 31 TCEVPAQPSPQ-IHWMKDG--------VPLPLPPSPVLILPEIGPQDQGTYSCVATHSSH 81
Query: 137 TQGSSGQMEVLVRKP 151
S + + + +P
Sbjct: 82 GPQESRAVSISIIEP 96
Score = 43.6 bits (103), Expect = 6e-06
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFP 56
+ + L++ +G D G Y C ++ PQ +++ P
Sbjct: 49 VPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 63.4 bits (153), Expect = 3e-11
Identities = 28/230 (12%), Positives = 58/230 (25%), Gaps = 44/230 (19%)
Query: 227 SNEVATIVQAAQLVVEGTQPHAPYNIT------------GVATEFSVTLEWLPGYSGGPD 274
S ++ A G+ + N+T + + S+ W+ G D
Sbjct: 89 SLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTDAPED 148
Query: 275 LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT----YEFQVVGKNELGDGML 330
+ Y + T + R + V G ++
Sbjct: 149 TQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRP 208
Query: 331 SNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNK 390
+ + + PP NV+ I W+ P+ + + Y
Sbjct: 209 FDQLFALHAIDQINPPLNVTAEIEGTRMSIQWEKPVSAFPI---HCFDY----------- 254
Query: 391 GQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
+++ N T I+ + + Y+ QV
Sbjct: 255 -EVK---------IHNTRNGYL----QIEKLMTNAFISIIDDLSKYDVQV 290
Score = 36.8 bits (84), Expect = 0.011
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLERASL--IQYYLIKYRTDG--SWKTLN 389
PP N ++ V + W+P ++ Y +K ++T
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRI 63
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 58.8 bits (143), Expect = 3e-11
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--- 205
+ PP F + R G+ V M Q G KP ++W R + + ++ +
Sbjct: 3 KAPPTFKVSLMDQSVR-EGQDVIMSIRVQ---GEPKPVVSWLR-NRQPVRPDQRRFAEEA 57
Query: 206 -GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
GG I R D G+Y C NE A+L V G
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 49.6 bits (119), Expect = 6e-08
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
++ P V+W ++++ + P Q + + G L + G YTC N
Sbjct: 26 SIRVQGEPKPV-VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNE 84
Query: 135 HGTQGSSGQMEV 146
+G + ++EV
Sbjct: 85 YGARQCEARLEV 96
Score = 40.3 bits (95), Expect = 9e-05
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+ R + +G L I D+G Y C+ N G Q +A L V
Sbjct: 50 QRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQ-CEARLEVR 97
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 62.3 bits (150), Expect = 3e-11
Identities = 37/260 (14%), Positives = 77/260 (29%), Gaps = 38/260 (14%)
Query: 205 VGGNITIEGLRRVDFGYYECV---VSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSV 261
V G++++E L V G V + V A + + + ++ V
Sbjct: 12 VTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDEN--AFEYVEAISDDGV 69
Query: 262 TLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 321
+ G + + + + + + T+ + +T ++ + + +
Sbjct: 70 FVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLV 129
Query: 322 KNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYR 380
G NI+ + P R+ +E+N ++W P L Y L K
Sbjct: 130 HEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGLEGYILYK-- 187
Query: 381 TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
DG + T T +L T Y F++
Sbjct: 188 -DGKK-----------------------------VAEIGKDETSYTFKKLNRHTIYNFKI 217
Query: 441 VGKNELGDGMLSNIVVVKTK 460
K G+ + ++T
Sbjct: 218 AAKYSNGEVSSKESLTLRTA 237
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 63.0 bits (152), Expect = 3e-11
Identities = 27/234 (11%), Positives = 58/234 (24%), Gaps = 11/234 (4%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
+ V + MC + G+ A P +V P + P +
Sbjct: 47 NNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTL 106
Query: 77 QCHIKANPTFQY--VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
+C ++ V + ++ L+ + +H ++C
Sbjct: 107 RCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA--EVTTTVLVRRDHHGANFSCRTELD 164
Query: 135 HGTQG------SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
QG +S ++ PA + + +V + C + +
Sbjct: 165 LRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVH 224
Query: 189 WQRRDGVALPKNRVKIVGGNITIEG-LRRVDFGYYECVVSNEVATIVQAAQLVV 241
D P + + D G + + Q V
Sbjct: 225 LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 278
Score = 49.5 bits (117), Expect = 8e-07
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 5/136 (3%)
Query: 97 LLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTI 156
+ P K++++ N ++ N + C G + + V P +
Sbjct: 33 IETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWT-PERVEL 91
Query: 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGL-R 215
P +Q VG+++ + C+ + T+ R L + +T L R
Sbjct: 92 APLPSWQP-VGKNLTLRCQVEGGAPRANLTVVL-LRGEKELKREPAVGEPAEVTTTVLVR 149
Query: 216 RVDFG-YYECVVSNEV 230
R G + C ++
Sbjct: 150 RDHHGANFSCRTELDL 165
Score = 44.5 bits (104), Expect = 3e-05
Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 10/150 (6%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIG-------EPQAAQAYLNV-EFPAKVTFTPTVQYL 68
+ T + + C + E +A L PA + + L
Sbjct: 141 EVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVL 200
Query: 69 PFRLQGVVQCHIKANP--TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR 126
QG V C + + V + L P T + + R
Sbjct: 201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQR 260
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTI 156
TC + +Q + + + P +
Sbjct: 261 LTCAVILGNQSQETLQTVTIYSFPAPNVIL 290
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 59.1 bits (143), Expect = 4e-11
Identities = 27/137 (19%), Positives = 41/137 (29%), Gaps = 32/137 (23%)
Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFVISWQPP--LERASLIQYYLIKYRTD 382
G S V V TK P PP NV + +++W+ +E S + Y + YRT
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTS 60
Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
+ V T + L Y +V
Sbjct: 61 SQNN----------------------------VQVLNTNKTSAELV-LPIKEDYIIEVKA 91
Query: 443 KNELGDGMLSNIVVVKT 459
+ GDG S + +
Sbjct: 92 TTDGGDGTSSEQIRIPR 108
Score = 47.1 bits (112), Expect = 6e-07
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 14/103 (13%)
Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQGNKDWLPIPVTPPGST 302
P N+ AT+ V L W ++ Y ++YR + V T
Sbjct: 21 PPGNVVWNATDTKVLLNWEQV----KAMENESEVTGYKVFYRTSSQNNV---QVLNTNKT 73
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSN-IVVVKTKGPKPG 344
+ L Y +V + GDG S I + + P
Sbjct: 74 SAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPS 115
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 61.4 bits (149), Expect = 5e-11
Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 15/186 (8%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
QC + K+ E + + + ++ N GRY C H
Sbjct: 29 QCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHY 88
Query: 137 TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
S +E++V P + + GE++ + C + + +
Sbjct: 89 RFRYSDTLELVVTGLYGKPFLSADRGLVLM--PGENISLTCSSAHIPF---DRFSLAKEG 143
Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA-----QLVVEGT--QP 246
++LP+++ N ++ + G Y C + + + +LVV + Q
Sbjct: 144 ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQD 203
Query: 247 HAPYNI 252
+ N+
Sbjct: 204 YTTQNL 209
Score = 39.9 bits (93), Expect = 7e-04
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 21/137 (15%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIG--EPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
+ D VI+ + ++ +G Y C+ G L V + P +
Sbjct: 61 ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDT-LELVVT---GLYGKPFLSADR--- 113
Query: 73 QGVV--------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
V+ C P ++ K+ L Q + + V+ N
Sbjct: 114 GLVLMPGENISLTCSSAHIPFDRFS-LAKEGE-LSLPQHQS--GEHPANFSLGPVDLNVS 169
Query: 125 GRYTCTPYNAHGTQGSS 141
G Y C + S
Sbjct: 170 GIYRCYGWYNRSPYLWS 186
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 58.2 bits (141), Expect = 7e-11
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV- 205
PP F P + G ++ C G P + W++ G L + R+
Sbjct: 10 QGSPPCFLRFPRPVR-VVSGAEAELKCVVL---GEPPPVVVWEK-GGQQLAASERLSFPA 64
Query: 206 -GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
G + D G Y C N AA + V
Sbjct: 65 DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 45.1 bits (107), Expect = 3e-06
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
+C + P V W K + L ++ + +G LL T G Y C N
Sbjct: 34 KCVVLGEPPPV-VVWEKGGQQLAA--SERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
Query: 134 AHGTQGSSGQMEVLVRKPP 152
A G ++ + VL PP
Sbjct: 91 AAGEAYAAAAVTVLE--PP 107
Score = 43.1 bits (102), Expect = 1e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
R+ DG L++ D+G+Y+C N GE A A + V P
Sbjct: 59 RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAY-AAAAVTVLEP 106
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 58.2 bits (141), Expect = 7e-11
Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 11/112 (9%)
Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ P P + + TE L W P + Y I G TP +
Sbjct: 6 SGPDGPTQLRALNLTEGFAVLHWKPP----QNPVDTYDIQVTAPGAPPL--QAETPGSAV 59
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV 354
++ L T Y V G ++I T PR++ EV
Sbjct: 60 DYPLHDLVLHTNYTATVRGLRGPNLTSPASITFT-TGLE---APRDLEAKEV 107
Score = 49.4 bits (118), Expect = 1e-07
Identities = 16/109 (14%), Positives = 27/109 (24%), Gaps = 31/109 (28%)
Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
P P + + V+ W+PP + + Y I+ G+
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPPLQA----------- 52
Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
TP + ++ L T Y V G
Sbjct: 53 ----------------ETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLT 85
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 58.3 bits (141), Expect = 9e-11
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 9/115 (7%)
Query: 51 LNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP-----YQTKD 105
L V +P +V + RL+ ++ ++ NP + W + + L +
Sbjct: 3 LTVYYPPRVVSLEEPEL---RLEHCIEFVVRGNPPPT-LHWLHNGQPLRESKIIHVEYYQ 58
Query: 106 IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160
+ G LLF + + G YT N GT + L P + P
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTP 113
Score = 46.7 bits (111), Expect = 1e-06
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 26/127 (20%)
Query: 143 QMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-R 201
+ V PP E + + + G PT+ W +G L ++
Sbjct: 2 ALTVYY--PPRVVSLEEPE----LRLEHCIEFVVR---GNPPPTLHW-LHNGQPLRESKI 51
Query: 202 VKIVG--------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV-------EGTQP 246
+ + G + + G Y + N + T Q + P
Sbjct: 52 IHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111
Query: 247 HAPYNIT 253
P +T
Sbjct: 112 TPPITVT 118
Score = 36.7 bits (85), Expect = 0.003
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+G L+ N ++G Y N +G +
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTAN-QTINGHF 99
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 57.7 bits (140), Expect = 9e-11
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 31/120 (25%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
G P+N+ VT + ++W PP+ I Y + +R S + L
Sbjct: 9 SGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQ---------- 58
Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
T+ T+ L P TTY+ +V G G LS + +T
Sbjct: 59 ------------------NITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 52.3 bits (126), Expect = 6e-09
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIPVTPPG 300
P N+ T + L W P P L +Y + +R+ ++ L T
Sbjct: 11 FPQNLHVTGLTTSTTELAWDP-----PVLAERNGRIISYTVVFRDINSQQELQNITT--- 62
Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
T+ T+ L P TTY+ +V G G LS + +T
Sbjct: 63 DTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 57.8 bits (140), Expect = 1e-10
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-- 197
++ P F KP++ + G+SV + C+ P + W+R + +
Sbjct: 4 HHHHHSHEHKRAPMFIYKPQSK-KVLEGDSVKLECQIS---AIPPPKLFWKR-NNEMVQF 58
Query: 198 PKNRVKIV---GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
+R+ + G +T I+ + + D G+Y NE +L V
Sbjct: 59 NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 47.8 bits (114), Expect = 4e-07
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTCTPY 132
+C I A P + + W ++ +++ T I + Q+ +LL VN+ G YT +
Sbjct: 36 ECQISAIPPPK-LFWKRNNEMVQF-NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV 93
Query: 133 NAHGTQGSSGQMEVLVRKPPAFTI 156
N G + +++V P T+
Sbjct: 94 NEAGVTTCNTRLDVTA--RPNQTL 115
Score = 42.8 bits (101), Expect = 2e-05
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 11 RVVIKKDG----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
R+ + +D TL+I V D+G Y N G L+V T
Sbjct: 62 RISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARPNQT 114
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 57.9 bits (140), Expect = 1e-10
Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 19/115 (16%)
Query: 142 GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN- 200
G + PP P + K GE ++C+A EG PTI W + G + +
Sbjct: 1 GSLRQ-EDFPPRIVEHPSDLIVSK-GEPATLNCKA---EGRPTPTIEW-YKGGERVETDK 54
Query: 201 ------RVKIVGG-----NITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEG 243
R+ + G I R D G Y CV N + V A L V
Sbjct: 55 DDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 47.5 bits (113), Expect = 5e-07
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 10/113 (8%)
Query: 53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD---IVVM 109
+FP ++ P+ + + C + PT + W K +E + +++
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-IEWYKGGERVETDKDDPRSHRMLL 64
Query: 110 QNGSLLFTRV-----NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK 157
+GSL F R+ ++ +G Y C N G S + V
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE-AVSHDASLEVAAAAHHHHH 116
Score = 46.3 bits (110), Expect = 1e-06
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 2 NTKVGSLETRVVIKKDGTLVI-----NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
T + ++ G+L D G+Y+C N +GE + A L V
Sbjct: 51 ETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
Query: 57 AKVT 60
A
Sbjct: 111 AHHH 114
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 60.1 bits (145), Expect = 1e-10
Identities = 26/205 (12%), Positives = 47/205 (22%), Gaps = 38/205 (18%)
Query: 246 PHAPYNITGVATEFS-VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST-- 302
P + + W S G Y Y+ + L P +
Sbjct: 21 ARGPEELLCFTERLEDLVCFWEEAASAGV-GPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 303 -----QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
+ + E +V + + V+ + P + +
Sbjct: 80 VRFWCSLPTADTSSFVPLELRVTAASGAP---RYHRVIHINEVVLLDAPVGLVARLADES 136
Query: 358 --FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
V+ W PP E I+Y + +
Sbjct: 137 GHVVLRWLPPPETPM---TSHIRYEV---------------------DVSAGQGAGSVQR 172
Query: 416 PVTPPGSTQITINRLTPATTYEFQV 440
G T+ ++ L T Y F V
Sbjct: 173 VEILEGRTECVLSNLRGRTRYTFAV 197
Score = 44.7 bits (105), Expect = 2e-05
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 2/101 (1%)
Query: 221 YYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFS--VTLEWLPGYSGGPDLKQN 278
V + A + E AP + + S V L WLP
Sbjct: 97 LELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIR 156
Query: 279 YVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
Y + + G T+ ++ L T Y F V
Sbjct: 157 YEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 197
Score = 35.1 bits (80), Expect = 0.033
Identities = 12/115 (10%), Positives = 21/115 (18%), Gaps = 19/115 (16%)
Query: 334 VVVKTKGPKPGPPRNVS-VTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
K P + TE V W+ Y Y+ + L +
Sbjct: 12 FESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLH 71
Query: 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
P + + E +V +
Sbjct: 72 QAPTARG------------------AVRFWCSLPTADTSSFVPLELRVTAASGAP 108
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 56.7 bits (137), Expect = 2e-10
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 241 VEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP 299
G + + ++ V + L W P +Y + Q + +
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL---- 60
Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
++ + +L P TTY +V LG G S +T P GP
Sbjct: 61 -EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT-SPPSGPS 105
Score = 48.6 bits (116), Expect = 2e-07
Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 34/125 (27%)
Query: 338 TKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRTDGSWKTLNKGQIR 394
+ G + ++ + + + ++W R + Y L
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYEL------------------ 46
Query: 395 PEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454
Q + + ++ + +L P TTY +V LG G S
Sbjct: 47 --------HVLNQDEEWHQMVL-----EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPD 93
Query: 455 VVVKT 459
+T
Sbjct: 94 HEFRT 98
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 56.6 bits (137), Expect = 2e-10
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-----RVKIV 205
PP P + G+ + + C G P +TW G + ++
Sbjct: 5 PPKIEALPSDI-SIDEGKVLTVACAFT---GEPTPEVTWSC-GGRKIHSQEQGRFHIENT 59
Query: 206 GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
T I +++ D G Y + NE + + +
Sbjct: 60 DDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 48.1 bits (115), Expect = 2e-07
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
C PT + VTW+ R + + + +L+ V + G YT + N
Sbjct: 26 ACAFTGEPTPE-VTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN 84
Query: 134 AHGTQGSSGQMEV 146
G+ ++ + +
Sbjct: 85 EFGSDSATVNIHI 97
Score = 43.8 bits (104), Expect = 6e-06
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
R I+ TL+I V D GLY + N G A +++
Sbjct: 53 RFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDS-ATVNIHIR 98
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 57.3 bits (138), Expect = 2e-10
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 9/106 (8%)
Query: 260 SVTLEWLP--------GYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTP 311
+V L W P Y + G KD V T IT+N L P
Sbjct: 33 TVVLTWSPPSSLINGETDESSVPELYGYEVLISSTG-KDGKYKSVYVGEETNITLNDLKP 91
Query: 312 ATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
A Y +V + G S + T +P P ++ ++G
Sbjct: 92 AMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRISGPSSG 137
Score = 53.1 bits (127), Expect = 7e-09
Identities = 26/136 (19%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS 384
G S K +++ V++W PP +
Sbjct: 1 GSSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETD---------- 50
Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
PE Y G KD V T IT+N L PA Y +V +
Sbjct: 51 ------ESSVPELYGYEVLISSTG-KDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEY 103
Query: 445 ELGDGMLSNIVVVKTK 460
G S + T
Sbjct: 104 NSIKGTPSEAEIFTTL 119
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 56.7 bits (137), Expect = 3e-10
Identities = 21/139 (15%), Positives = 36/139 (25%), Gaps = 29/139 (20%)
Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNN--GFVISWQPPLERAS--LIQYYLIKYR 380
G S ++ T P P NV+V + I W P + + Y I +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 381 TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
+ L E ++ I+ T ++
Sbjct: 61 WQSA----------GISKELLEE--------------VGQNGSRARISVQVHNATCTVRI 96
Query: 441 VGKNELGDGMLSNIVVVKT 459
G G S+ V +
Sbjct: 97 AAVTRGGVGPFSDPVKIFI 115
Score = 48.6 bits (116), Expect = 2e-07
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 248 APYNITGVA--TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIPVTPP 299
AP N+T + +V + W+ P K Y I + Q +
Sbjct: 21 APLNVTVFLNESSDNVDIRWMK-----PPTKQQDGELVGYRISHVWQSAGISKELLEEVG 75
Query: 300 GS-TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
+ ++ I+ T ++ G G S+ V + P P +
Sbjct: 76 QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI--PAHSGPSS 123
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 56.4 bits (136), Expect = 4e-10
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 239 LVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297
L +G+ P + VA T S+ + W + Y I Y E G +
Sbjct: 22 LYFQGSVSDVPTKLEVVAATPTSLLISWDAPAVTV----RYYRITYGETGGNSPVQEFTV 77
Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335
P + TI+ L P Y V L + + +
Sbjct: 78 PGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPI 115
Score = 52.6 bits (126), Expect = 8e-09
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 29/115 (25%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P + V +ISW P A ++YY I
Sbjct: 29 SDVPTKLEVVAATPTSLLISWDAP---AVTVRYYRI------------------------ 61
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
Y E G + P + TI+ L P Y V L + + +
Sbjct: 62 -TYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPI 115
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 55.9 bits (135), Expect = 5e-10
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 8/106 (7%)
Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ P N+ + T S+ + W P +Y + Y P +
Sbjct: 6 SGRSPPSNLALASETPDSLQVSWTPP----LGRVLHYWLTYAPASGLGPEKSVSVPGARS 61
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
+T+ L AT Y V G + P P +
Sbjct: 62 HVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTA---CPSGPSS 104
Score = 55.1 bits (133), Expect = 7e-10
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 31/117 (26%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
PP N+++ + +SW PP + +Y + Y
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPP---LGRVLHYWLTYAPASG----------------- 47
Query: 402 GEYREQGNKDWLPIPVTPPGS-TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
V+ PG+ + +T+ L AT Y V G +
Sbjct: 48 ---------LGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQ 95
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 55.1 bits (133), Expect = 8e-10
Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 29/109 (26%)
Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
+ P + V +V +I+W PP + + +
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPPS---QPVDGFEL----------------------- 35
Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
Y + Q +I L P T YE ++ +
Sbjct: 36 --TYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSS 82
Score = 53.2 bits (128), Expect = 4e-09
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
AP I T+ + + W+P S D + + Y + Q +I
Sbjct: 5 APSQIEVKDVTDTTALITWMPP-SQPVD---GFELTYGIKDVPGDRTTIDLTEDENQYSI 60
Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR 347
L P T YE ++ + + T
Sbjct: 61 GNLKPDTEYEVSLISRRGDMSSNPAKETFT-TGLAAALEHH 100
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 55.4 bits (133), Expect = 9e-10
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 20/124 (16%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR---RDGV 195
GSSG F KP+ KVGE + + + + +KPTI W + D
Sbjct: 1 GSSGSS------GILFIEKPQGG-TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLA 53
Query: 196 ALPKNRVKIVG----------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
+ +++ + I + G Y C V+ + + L V +
Sbjct: 54 SKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
Query: 246 PHAP 249
P
Sbjct: 114 GTTP 117
Score = 41.9 bits (98), Expect = 4e-05
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ I + +G Y CEV+ + L V TP + P
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVH--ESTGTTPNIDSGP 123
Score = 35.7 bits (82), Expect = 0.006
Identities = 13/91 (14%), Positives = 21/91 (23%), Gaps = 12/91 (13%)
Query: 75 VVQCHIKANPTFQY--VTWTKDK----------RLLEPYQTKDIVVMQNGSLLFTRVNQN 122
+KA + + W K K L + + + + N
Sbjct: 26 TFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 85
Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153
G Y C S +EV
Sbjct: 86 FAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 54.6 bits (132), Expect = 9e-10
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV- 205
+ P T++ + + G++ Q + W +GV L ++ ++
Sbjct: 5 LDHAPRITLRMRSH-RVPCGQNTRFILNVQ---SKPTAEVKWYH-NGVELQESSKIHYTN 59
Query: 206 -GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
G +T I D G Y V +N A L V G
Sbjct: 60 TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 45.4 bits (108), Expect = 2e-06
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
++++ PT + V W + L+ + I +L + + G Y N
Sbjct: 29 ILNVQSKPTAE-VKWYHNGVELQE--SSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTN 85
Query: 134 AHGTQGSSGQMEV 146
G ++V
Sbjct: 86 YKGEASDYATLDV 98
Score = 40.4 bits (95), Expect = 1e-04
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
++ TL I +DDSG Y +N GE A L+V
Sbjct: 54 KIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEAS-DYATLDVT 99
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 54.3 bits (131), Expect = 1e-09
Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 5/93 (5%)
Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ P + VA T S+ + W S Y I Y E G + P S+
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDASSSSV----SYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335
TI+ L+P Y V D S
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYSYSPS 91
Score = 54.3 bits (131), Expect = 1e-09
Identities = 24/115 (20%), Positives = 31/115 (26%), Gaps = 29/115 (25%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P + V +ISW +S + YY I Y G
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS---SSSVSYYRITYGETG------------------ 43
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
GN V P S+ TI+ L+P Y V D S
Sbjct: 44 ------GNSPVQEFTV-PGSSSTATISGLSPGVDYTITVYAYYSYYDLYYSYSPS 91
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 54.3 bits (131), Expect = 2e-09
Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 18/122 (14%)
Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
++ + +S + V P FT + G + + CE ++ + W +
Sbjct: 2 SSGSSGRTSAMLTVRAL-PIKFTEGLRNE-EATEGATAVLRCEL-----SKMAPVEW-WK 53
Query: 193 DGVALPKN-RVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH 247
L R + G I GL D G Y C+ E + A L V P
Sbjct: 54 GHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTS----AMLTVRA-MPS 108
Query: 248 AP 249
P
Sbjct: 109 GP 110
Score = 41.6 bits (98), Expect = 5e-05
Identities = 24/122 (19%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 38 SNGIGEPQAAQAYLNV-EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR 96
S G A L V P K T + V++C + V W K
Sbjct: 3 SGSSGR---TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP---VEWWKGHE 56
Query: 97 LLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153
L + Q+G L + G Y C G + +S + V P
Sbjct: 57 TLRD--GDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA-MPSG 109
Query: 154 FT 155
+
Sbjct: 110 PS 111
Score = 37.3 bits (87), Expect = 0.001
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
R +++DG L I + ++D+G Y+C + A L V
Sbjct: 63 RHSLRQDGARCELQIRGLVAEDAGEYLCMCGK-----ERTSAMLTVRAM 106
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 20/109 (18%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
GSSG AF + YQ G V E K + W ++G +
Sbjct: 1 GSSGS------SGAAFAKILDPAYQVDKGGRVRFVVEL----ADPKLEVKW-YKNGQEIR 49
Query: 198 PKNRVKIVG-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
P + G I + D Y +E + +L V
Sbjct: 50 PSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCS----TELFVR 94
Score = 37.7 bits (88), Expect = 7e-04
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 8/49 (16%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
+ + + G L IN D Y + + L V
Sbjct: 53 KYIFEHKGCQRILFINNCQMTDDSEYYVTAGD-----EKCSTELFVRSG 96
Score = 37.7 bits (88), Expect = 8e-04
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
+ A+P + V W K+ + + P + + G L Y T
Sbjct: 29 VVEL-ADPKLE-VKWYKNGQEIRP--STKYIFEHKGCQRILFINNCQMTDDSEYYVT--- 81
Query: 134 AHGTQGSSGQMEVLVRKPPA 153
A + S+ E+ VR P+
Sbjct: 82 AGDEKCST---ELFVRSGPS 98
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 54.2 bits (130), Expect = 2e-09
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 14/104 (13%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------ 198
F ++P+ VG S+ A + P + W + V L
Sbjct: 4 IGLFVMRPQDGEV-TVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 199 -KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
K+ + I + G Y C VS + L V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 39.2 bits (91), Expect = 3e-04
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
R L I +G Y CEVS + L V
Sbjct: 65 RASKVYLFELHITDAQPAFTGSYRCEVSTKDKF-DCSNFNLTV 106
Score = 35.7 bits (82), Expect = 0.005
Identities = 11/84 (13%), Positives = 19/84 (22%), Gaps = 12/84 (14%)
Query: 75 VVQCHIKANPTFQY--VTWTKDKRLLEPYQTKDIVVMQ----------NGSLLFTRVNQN 122
+ + V W K K + + + + L T
Sbjct: 23 TFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA 82
Query: 123 HQGRYTCTPYNAHGTQGSSGQMEV 146
G Y C S+ + V
Sbjct: 83 FTGSYRCEVSTKDKFDCSNFNLTV 106
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 54.1 bits (130), Expect = 2e-09
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 47 AQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDI 106
+ L V P ++ T T Q+ +G ++C I++ P + W+ + +LE +
Sbjct: 5 SSGTLTVNGPPIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRY 63
Query: 107 VVMQN-------GSLLFTRVNQNHQGR-YTCTPYNAHGTQGSSGQMEVLVRKPP 152
V +L + + + Y CT +N+ G+ + + + +
Sbjct: 64 TVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS--DTEIIRLKEQGSE 115
Score = 54.1 bits (130), Expect = 3e-09
Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 17/122 (13%)
Query: 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALP 198
S + V PP + + + GE + C T P I W ++ V
Sbjct: 3 SGSSGTLTVNGPPIIS-STQTQHALH-GEKGQIKCFI---RSTPPPDRIAWSWKENVLES 57
Query: 199 KNRVKI----------VGGNITIEGLRRVDFG-YYECVVSNEVATIVQAAQLVVEGTQPH 247
+ V +TI + R DF Y C N + + +L +G++
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117
Query: 248 AP 249
P
Sbjct: 118 GP 119
Score = 34.5 bits (79), Expect = 0.017
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 18 GTLVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
TL I+ + +D +Y C N G L +
Sbjct: 76 STLTISNIVRADFQTIYNCTAWNSFGSDT-EIIRLKEQ 112
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 53.6 bits (129), Expect = 2e-09
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
AP ++ T+ S+T+ W P + Y I Y PP ST +TI
Sbjct: 4 APTDLQVTNVTDTSITVSWTPPSATI----TGYRITYTPSNGPGEPKELTVPPSSTSVTI 59
Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
LTP Y V + + T G
Sbjct: 60 TGLTPGVEYVVSVYALKDNQESPPLV-GTQTTGGHHH 95
Score = 52.4 bits (126), Expect = 5e-09
Identities = 23/107 (21%), Positives = 31/107 (28%), Gaps = 29/107 (27%)
Query: 344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
P ++ VT V +SW PP ++ I Y I
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP---SATITGYRI------------------------- 34
Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
Y PP ST +TI LTP Y V + +
Sbjct: 35 TYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQES 81
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 53.9 bits (130), Expect = 3e-09
Identities = 26/118 (22%), Positives = 36/118 (30%), Gaps = 18/118 (15%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
GSSG P F +K + G V C G KP I W +DG +
Sbjct: 1 GSSGSSG-----APFFEMKLKHYKIF-EGMPVTFTCRVA---GNPKPKIYW-FKDGKQIS 50
Query: 199 KNRVKIV-----GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
G + D G Y + +N I +L+V+ P
Sbjct: 51 PKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV-NSGP 107
Score = 43.9 bits (104), Expect = 6e-06
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
C + NP + + W KD + + P + SL T + G YT N
Sbjct: 29 TCRVAGNPKPK-IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 87
Query: 134 AHGTQGSSGQMEVLVRKPP 152
G +G++ V
Sbjct: 88 PQGRISCTGRLMVQAVNSG 106
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 11 RVVIKKDG----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
I++D +L DD G Y +N G L V+
Sbjct: 55 HYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS-CTGRLMVQ 101
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 55.9 bits (134), Expect = 3e-09
Identities = 30/202 (14%), Positives = 53/202 (26%), Gaps = 29/202 (14%)
Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGST 302
++ ++ F L W G G PD Y I Y+ G +DW+ S
Sbjct: 5 SDLLQHVKFQSSNFENILTWDSGPEGTPDT--VYSIEYKTYGERDWVAKKGCQRITRKSC 62
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVSVTEVNNGF 358
+T+ Y +V + G S + PP V+
Sbjct: 63 NLTVETGNLTELYYARVTAVSA---GGRSATKMTDRFSSLQHTTLKPPD-VTCISKVRSI 118
Query: 359 VISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT 418
+ P + + + Y E + N+ +
Sbjct: 119 QMIVHPTPTPIRAGDGHRLTLEDIFH------------DLFYHLELQV--NRTYQMHLGG 164
Query: 419 PPGSTQITINRLTPATTYEFQV 440
+ LTP T + +
Sbjct: 165 K--QREYEFFGLTPDTEFLGTI 184
Score = 34.3 bits (78), Expect = 0.050
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 341 PKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYL-IKYRTDGSWKTL 388
++V N +++W E Y + K + W
Sbjct: 3 DPSDLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVAK 51
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 56.0 bits (134), Expect = 3e-09
Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 37/201 (18%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINR-------LTPA 312
++ W + Q + W + + + S + LT
Sbjct: 17 QISCVWSQDGALQDTSCQVHA-WPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTV 75
Query: 313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG-FVISWQPPLERASL 371
+V+ + + +++ + + P ++ V V ISW+
Sbjct: 76 DIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYF 135
Query: 372 IQY--YLIKYRTDG-SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITIN 428
++ + + + G +W+ P+ I +
Sbjct: 136 ERHLEFEARTLSPGHTWEEA-------------------------PLLTLKQKQEWICLE 170
Query: 429 RLTPATTYEFQVVGKNELGDG 449
LTP T YEFQV K G+
Sbjct: 171 TLTPDTQYEFQVRVKPLQGEF 191
Score = 49.0 bits (116), Expect = 7e-07
Identities = 25/135 (18%), Positives = 41/135 (30%), Gaps = 10/135 (7%)
Query: 223 ECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATE-FSVTLEWLPGYSGGPDLKQ-NYV 280
C + E + AP ++ V E + W + + +
Sbjct: 83 LCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFE 142
Query: 281 IWYREQGNK-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML----SNIVV 335
G+ + P+ I + LTP T YEFQV K G+ S +
Sbjct: 143 ARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLA 202
Query: 336 VKTKGPKPGPPRNVS 350
+T KP +
Sbjct: 203 FRT---KPAALGKDT 214
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 52.8 bits (127), Expect = 4e-09
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 31/116 (26%)
Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
PR++ EV +++W P YL+ + T G
Sbjct: 7 GLEAPRDLEAKEVTPRTALLTWTEP---PVRPAGYLLSFHTPG----------------- 46
Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
G+ +E + P G T + L P+T+Y ++ +
Sbjct: 47 -GQTQEI---------LLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 92
Score = 50.5 bits (121), Expect = 3e-08
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ AP ++ T + L W P Y++ + G + + P G T
Sbjct: 6 SGLEAPRDLEAKEVTPRTALLTWTEP-PVRPA---GYLLSFHTPGGQTQ--EILLPGGIT 59
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
+ L P+T+Y ++ + GP
Sbjct: 60 SHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISGPS 103
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 52.4 bits (126), Expect = 5e-09
Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 29/106 (27%)
Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
P+ ++ T+V+ + I+W+ P + Y +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESP---QGQVSRYRV-------------------------T 35
Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
Y + P + L P + Y VV ++ +
Sbjct: 36 YSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMES 81
Score = 50.9 bits (122), Expect = 2e-08
Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 5/82 (6%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
P + S+ + W Y + Y + P +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59
Query: 307 NRLTPATTYEFQVVGKNELGDG 328
L P + Y VV ++ +
Sbjct: 60 QGLRPGSEYTVSVVALHDDMES 81
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 52.4 bits (126), Expect = 6e-09
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 12/106 (11%)
Query: 53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP------YQTKDI 106
V F +TF + + +K NP + W + +L
Sbjct: 1 VHFAPTITFLESP---TSDHHWCIPFTVKGNPKPA-LQWFYNGAILNESKYICTKIHVTN 56
Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
+G L + G YT N +G Q+ P
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK--DEKQISAHFMGWP 100
Score = 45.9 bits (109), Expect = 1e-06
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 18/106 (16%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR------ 201
V P T + +G KP + W +G L +++
Sbjct: 1 VHFAPTITFLESP----TSDHHWCIPFTV---KGNPKPALQWFY-NGAILNESKYICTKI 52
Query: 202 ----VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
G + ++ ++ G Y + NE + G
Sbjct: 53 HVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 37.8 bits (88), Expect = 8e-04
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
G L ++ ++G Y N G+ + Q +
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDE-KQISAHFM 97
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 54.2 bits (130), Expect = 6e-09
Identities = 24/170 (14%), Positives = 43/170 (25%), Gaps = 31/170 (18%)
Query: 72 LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-----------QNGSLLFTRVN 120
+ G V H+ +N + V W K K + + + +GSL +
Sbjct: 9 VYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
+ + Y N T + VL I E + + C E
Sbjct: 69 SSDEDEYEMESPNITDTM--KFFLYVLEM-VSKPMIYWE-------CSNATLTC---EVL 115
Query: 181 GTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
+ + T+ ++C N V
Sbjct: 116 EGTDVELKLYQG-------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRV 158
Score = 42.2 bits (99), Expect = 7e-05
Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 21/130 (16%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPTVQYLPFR 71
+ G+L I + S D Y E N + +L V E +K
Sbjct: 55 LDTVSGSLTIYNLTSSDEDEYEMESPNITDT---MKFFLYVLEMVSKPMIYWECSNA--- 108
Query: 72 LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131
+ C + + + K L + K + + N + + C
Sbjct: 109 ---TLTCEVLEGTDVEL-KLYQGKEHLRSLRQKTM----------SYQWTNLRAPFKCKA 154
Query: 132 YNAHGTQGSS 141
N +
Sbjct: 155 VNRVSQESEM 164
Score = 35.3 bits (81), Expect = 0.019
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 18/82 (21%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------KNRVKIVGGN--ITI 211
V +V H + W+++ KNRV + + +TI
Sbjct: 9 VYGNVTFHVP----SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64
Query: 212 EGLRRVDFGYYECVVSNEVATI 233
L D YE N T+
Sbjct: 65 YNLTSSDEDEYEMESPNITDTM 86
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 57.1 bits (138), Expect = 6e-09
Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 12/145 (8%)
Query: 113 SLLFTRVNQNHQGRYTC-TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
L + N C P + G P P + G +
Sbjct: 313 WWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDL-NISEGRMAE 371
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVAL----PKNRVKIVG-GNITIEGLRRVDFGYYECVV 226
+ C ++ W +G L R+ ++ G + + D G Y C+V
Sbjct: 372 LKCRT-----PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 426
Query: 227 SNEVATIVQAAQLVVEGTQPHAPYN 251
+N +A L V H ++
Sbjct: 427 TNVAGNSNASAYLNVSTAGTHHHHH 451
Score = 47.4 bits (113), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 5 VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
S R+ + DGTL + V D+G+Y C V+N G A AYLNV
Sbjct: 394 HASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNV 441
Score = 44.0 bits (104), Expect = 7e-05
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 63 PTVQYLPFRLQGV----VQCHIKANPTFQYVTWTKDKRLLEPYQTKD--IVVMQNGSLLF 116
P + P L + + P V W + + ++ I V+ +G+L F
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTPPMSS-VKWLLPNGTVLSHASRHPRISVLNDGTLNF 411
Query: 117 TRVNQNHQGRYTCTPYNAHGT 137
+ V + G YTC N G
Sbjct: 412 SHVLLSDTGVYTCMVTNVAGN 432
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 52.4 bits (126), Expect = 7e-09
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKIV 205
+K AF K E YQ G + + E + W ++G + ++
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL----ADHDAEVKW-LKNGQEIQMSGSKYIFE 66
Query: 206 G-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
G TI D Y+CVV E + +L V+
Sbjct: 67 SIGAKRTLTISQCSLADDAAYQCVVGGEKCS----TELFVK 103
Score = 37.7 bits (88), Expect = 8e-04
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+ + + G TL I+ D Y C V + L V+
Sbjct: 62 KYIFESIGAKRTLTISQCSLADDAAYQCVVGG-----EKCSTELFVK 103
Score = 31.6 bits (72), Expect = 0.14
Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 47 AQAYLNVEFPAKVTFTPTVQYLPFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQT 103
+ +++ F ++ +G + + A+ + V W K+ + ++
Sbjct: 4 HHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAE-VKWLKNGQEIQM-SG 60
Query: 104 KDIVVMQNG---SLLFTRVNQNHQGRYTCT 130
+ G +L ++ + Y C
Sbjct: 61 SKYIFESIGAKRTLTISQCSLADDAAYQCV 90
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 54.7 bits (131), Expect = 8e-09
Identities = 35/210 (16%), Positives = 54/210 (25%), Gaps = 39/210 (18%)
Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
GT+ +P ++ A F L W P Y + G + W I +
Sbjct: 2 GTELPSPPSVWFEAEFFHHILHWTPIPQQSEST--CYEVALLRYGIESWNSI----SQCS 55
Query: 303 QITINRLTPAT-------TYEFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVSV 351
Q LT T Y +V + G S V T+ V++
Sbjct: 56 QTLSYDLTAVTLDLYHSNGYRARV--RAVDGSRH-SQWTVTNTRFSVDEVTLTVGS-VNL 111
Query: 352 TEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR-EQGNK 410
N + Q P + + Q I Y R G
Sbjct: 112 EIHNGFILGKIQLPRPKMAPAQDTY--------------ESIFSHFREYEIAIRKVPGQF 157
Query: 411 DWLPIPVTPPGSTQITINRLTPATTYEFQV 440
+ V Q ++ + QV
Sbjct: 158 TFTHKKVK---HEQFSLLTSGEVGEFCVQV 184
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 56.3 bits (136), Expect = 8e-09
Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 11/144 (7%)
Query: 113 SLLFTRVNQNHQGRYTC-TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
+ N C TP N G P P + G + +
Sbjct: 302 WWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADL-NVTEGMAAE 360
Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALP----KNRVKIVG-GNITIEGLRRVDFGYYECVV 226
+ C A T +++W +G + K R+ ++ G + + D G Y C+V
Sbjct: 361 LKCRA----STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMV 416
Query: 227 SNEVATIVQAAQLVVEGTQPHAPY 250
SN V +A L V GT H +
Sbjct: 417 SNSVGNTTASATLNVTGTHHHHHH 440
Score = 48.6 bits (116), Expect = 2e-06
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 5 VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
G+ + R+ + DGTL V D+G+Y C VSN +G A A LNV
Sbjct: 384 HGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTT-ASATLNV 431
Score = 44.4 bits (105), Expect = 5e-05
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 89 VTWTKDKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
V+W + + I V+ +G+L FT V G YTC N+ G ++ +
Sbjct: 372 VSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGN--TTASATL 429
Query: 147 LVRKPP 152
V
Sbjct: 430 NVTGTH 435
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 54.5 bits (130), Expect = 8e-09
Identities = 19/185 (10%), Positives = 42/185 (22%), Gaps = 45/185 (24%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
++ C +A +TW KD +++ ++ +G Y C
Sbjct: 22 LLTCDAEAKN----ITWFKDGKMIGFLTE------DKKKWNLGSNAKDPRGMYQCKGSQN 71
Query: 135 HGTQGSSGQM----------EVLVRKPPAFT--------------IKPEAMYQRKVGESV 170
I G +V
Sbjct: 72 KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131
Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALPKNR----VKIVGGNITIEGLRRV-DFGYYECV 225
+ C I W + + + + + +++++ + GYY C
Sbjct: 132 ILTCPQ-----YPGSEILW-QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 185
Query: 226 VSNEV 230
Sbjct: 186 PRGSK 190
Score = 52.6 bits (125), Expect = 3e-08
Identities = 17/148 (11%), Positives = 36/148 (24%), Gaps = 26/148 (17%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEP-----------QAAQAYLNVEFPAKVTFTPTVQY 67
+ D G+Y C+ S +P A + + K
Sbjct: 50 KWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSD 109
Query: 68 LPFRLQGV-------------VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSL 114
+ G+ V P + + W + + + + + L
Sbjct: 110 GNEEMGGITQTPYKVSISGTTVILTCPQYPGSE-ILWQHNDKNIGGDEDDKNIGSDEDHL 168
Query: 115 LFTRVNQ-NHQGRYTCTPYNAHGTQGSS 141
++ G Y C P + +
Sbjct: 169 SLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 39.9 bits (92), Expect = 7e-04
Identities = 20/138 (14%), Positives = 34/138 (24%), Gaps = 10/138 (7%)
Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYE 223
+ SV + C + ITW + DG + + + G Y+
Sbjct: 15 YQEDGSVLLTC------DAEAKNITWFK-DGKMIGFL--TEDKKKWNLGSNAKDPRGMYQ 65
Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWY 283
C S + +Q + A + + G + Q
Sbjct: 66 CKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT-PYKV 124
Query: 284 REQGNKDWLPIPVTPPGS 301
G L P P
Sbjct: 125 SISGTTVILTCPQYPGSE 142
Score = 38.3 bits (88), Expect = 0.002
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 11 RVVIKKDGTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ + + L + + SG Y+C E YL
Sbjct: 159 KNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 54.8 bits (131), Expect = 9e-09
Identities = 30/202 (14%), Positives = 58/202 (28%), Gaps = 34/202 (16%)
Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGST----QITINRLTPATT 314
+V L + Y E ++ + + +T ++
Sbjct: 13 TVICILEMWNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVFHFMAD 72
Query: 315 YEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQY 374
F V ++ G + + KP PP +V+VT + ISW+ E +
Sbjct: 73 DIFSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVTFSGQ-YQISWRSDYEDPAFYML 131
Query: 375 -----YLIKYRTDG-SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITIN 428
Y ++YR G W + ++ ++ S +
Sbjct: 132 KGKLQYELQYRNRGDPWAVSPRRKLISVDSR----------------------SVSLLPL 169
Query: 429 RLTPATTYEFQVVGKNELGDGM 450
++YE QV G
Sbjct: 170 EFRKDSSYELQVRAGPMPGSSY 191
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 52.0 bits (125), Expect = 9e-09
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 22/111 (19%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
GSSG P + P+ E V + CE + TW +DG
Sbjct: 1 GSSGS------SGPVHILSPQDKVSLTFTTSERVVLTCELSRVD----FPATW-YKDGQK 49
Query: 197 L-PKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+ + + + + + D G +EC A + V+
Sbjct: 50 VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAF----FGVTVQ 96
Score = 43.9 bits (104), Expect = 6e-06
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA 57
+V+K DG L++ DSG + C +A + V+ P+
Sbjct: 55 LLVVKMDGRKHRLILPEAKVQDSGEFECRTEG-----VSAFFGVTVQDPS 99
Score = 38.5 bits (90), Expect = 4e-04
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 77 QCHI-KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPY 132
C + + + TW KD + +E ++ +VV +G L+ G + C
Sbjct: 31 TCELSRVDFP---ATWYKDGQKVEE--SELLVVKMDGRKHRLILPEAKVQDSGEFECR-- 83
Query: 133 NAHGTQGSSGQMEVLVRKPPAFT 155
T+G S V V+ P +
Sbjct: 84 ----TEGVSAFFGVTVQDPSGPS 102
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 51.7 bits (124), Expect = 1e-08
Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 31/123 (25%)
Query: 340 GPK--PGPPRNVSVTEV-NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396
GP + SVTE+ + FV+SW + + + +
Sbjct: 1 GPLGSHLVATSESVTEITASSFVVSWVSASDT---VSGFRV------------------- 38
Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
EY D P +T + I L P Y V +E G+ L
Sbjct: 39 ------EYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 92
Query: 457 VKT 459
T
Sbjct: 93 QTT 95
Score = 48.3 bits (115), Expect = 1e-07
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 5/97 (5%)
Query: 243 GTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
+ + T S + W+ D + + Y D P +
Sbjct: 3 LGSHLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTA 58
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
T + I L P Y V +E G+ L T
Sbjct: 59 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 53.7 bits (129), Expect = 1e-08
Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 35/169 (20%)
Query: 77 QCHIKANPTFQYVTWTK--DKRLLEPYQTKDIVVM------------QNGSLLFTRVNQN 122
++Q +TW ++++LE + V NG+L V++
Sbjct: 20 TILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKE 79
Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKP-PAFTIKPEAMYQRKVGESVDMHCEAQEAEG 181
+G Y + Q MEV P + + + C E
Sbjct: 80 DRGDYYMRMLHETEDQ-WKITMEVYEMVSKPMIYWE---------CSNATLTC---EVLE 126
Query: 182 TQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
+ + L R T+ ++C N V
Sbjct: 127 GTDVELKL-YQGKEHLRSLR------QKTMSYQWTNLRAPFKCKAVNRV 168
Score = 50.3 bits (120), Expect = 2e-07
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 20/130 (15%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPTVQYLPFR 71
+ K +G L I V +D G Y + + + + V E +K
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKIT--MEVYEMVSKPMIYWECSNA--- 118
Query: 72 LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131
+ C + + + K L + K + + N + + C
Sbjct: 119 ---TLTCEVLEGTDVEL-KLYQGKEHLRSLRQKTM----------SYQWTNLRAPFKCKA 164
Query: 132 YNAHGTQGSS 141
N +
Sbjct: 165 VNRVSQESEM 174
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 51.7 bits (124), Expect = 1e-08
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
AP N+ TE S+ L W + +++I Y+E P +
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPDAAF----DSFMIQYQESEKVGEAINLTVPGSERSYDL 59
Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
L P T Y + G + T G
Sbjct: 60 TGLKPGTEYTVSIYGVKGGHRSNPLSAEF--TTGGHHHHH 97
Score = 50.9 bits (122), Expect = 2e-08
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 29/106 (27%)
Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
P+N+ V+EV + +SW P + ++I+Y+
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP---DAAFDSFMIQYQESE-------------------- 40
Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
+ + + V P + L P T Y + G
Sbjct: 41 ----KVGEAINLTV-PGSERSYDLTGLKPGTEYTVSIYGVKGGHRS 81
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 53.9 bits (129), Expect = 1e-08
Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 14/153 (9%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
+L + I V DSG Y C V G ++ +
Sbjct: 56 TLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRI--DTRIL 113
Query: 67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT-----RVNQ 121
+P + + C + P + V+W P T ++ L+ R+
Sbjct: 114 EVPGTGEVQLTCQARGYPLAE-VSWQNVS---VPANTS---HIRTPEGLYQVTSVLRLKP 166
Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF 154
++C +NAH + +S ++ L R P
Sbjct: 167 QPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKV 199
Score = 48.5 bits (115), Expect = 1e-06
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 17/125 (13%)
Query: 154 FTIK-PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR------RDGVALPKNRVKIVG 206
FT+ P+ +Y VG SV + C+ + + + R + +L R ++
Sbjct: 3 FTVTAPKEVYTVDVGSSVSLECDF---DRRECTELEGIRASLQKVENDTSLQSERATLLE 59
Query: 207 GNIT-------IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF 259
+ I ++ D G Y C+V A + + V+ + I V
Sbjct: 60 EQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTG 119
Query: 260 SVTLE 264
V L
Sbjct: 120 EVQLT 124
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 51.4 bits (123), Expect = 2e-08
Identities = 21/114 (18%), Positives = 31/114 (27%), Gaps = 10/114 (8%)
Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P ++ VA T S+ + W G Q Y I Y E G + P
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP-----KPGPPRNVSVTE 353
TI+ L P Y V + ++ + P
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQHHHHH 113
Score = 48.4 bits (115), Expect = 2e-07
Identities = 20/112 (17%), Positives = 26/112 (23%), Gaps = 29/112 (25%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
PR++ V +ISW QYY I
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG---RGSYQYYRI------------------------ 36
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
Y E G + P TI+ L P Y V +
Sbjct: 37 -TYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAVTDHKPHADGP 87
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 53.8 bits (129), Expect = 2e-08
Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 11/155 (7%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C N + L + K + +N G+Y+C
Sbjct: 27 CCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 84
Query: 137 TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
S ++++V + P ++ P GE V +C T +
Sbjct: 85 WSEPSNLLDLVVTEMYDTPTLSVHPGPEVIS--GEKVTFYCRLD----TATSMFLLLKEG 138
Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
+ + V + + G Y C S
Sbjct: 139 RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSY 173
Score = 36.8 bits (85), Expect = 0.009
Identities = 24/171 (14%), Positives = 38/171 (22%), Gaps = 17/171 (9%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIG--EPQAAQAYL-NVEFPAKVTFTPTVQYLPFR 71
I + S +G Y C G EP + + +
Sbjct: 57 INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISG 116
Query: 72 LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131
+ C + K+ R + V V H+G Y C
Sbjct: 117 EKVTFYCRLDTA--TSMFLLLKEGRSSHVQRGYGKV---QAEFPLGPVTTAHRGTYRCFG 171
Query: 132 -YNAHGTQGSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
YN H S +++LV P +
Sbjct: 172 SYNNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFP----ADTWGTYLLTTE 218
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 50.9 bits (122), Expect = 2e-08
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ P ++ + + + W P + + Y P +T
Sbjct: 6 SGLAPPRHLGFSDVSHDAARVFWEGA----PRPVRLVRVTYVSSEGGHSGQTEA-PGNAT 60
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR 347
+ L+ +TTY +V G V K P P
Sbjct: 61 SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105
Score = 50.9 bits (122), Expect = 2e-08
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 30/108 (27%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
PPR++ ++V+ + + W+ ++ + Y +
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGA---PRPVRLVRVTYVSSEG----------------- 47
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
G + P +T + L+ +TTY +V G
Sbjct: 48 GHSGQT---------EAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGS 86
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 50.9 bits (122), Expect = 2e-08
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 244 TQPHAPYNITGVA--TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
+ P P ++ V + + L W + P +Y + + + I T S
Sbjct: 3 SAPAFPTGLSAVLDSSGNTANLTW----NAAPGA-NSYNVKRSTKSGGPYTTI-ATNITS 56
Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
T T + T Y + V + + + S +++
Sbjct: 57 TNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 40.9 bits (96), Expect = 7e-05
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
SY + + + I T ST T + T Y + V + + + S +++
Sbjct: 34 SYNVKRSTKSGGPYTTI-ATNITSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQ 92
Query: 459 T 459
Sbjct: 93 Y 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 54.5 bits (131), Expect = 3e-08
Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGGNITIEGL 214
E+ ++ +G+++ + C+ + + + L + V + G++ + +
Sbjct: 252 KESAWEAHLGDTLTIRCDT---KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV 308
Query: 215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
+ D G Y C E + +L V H
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343
Score = 51.0 bits (122), Expect = 4e-07
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
C K V + + + V ++NG L F +V G YTC
Sbjct: 268 CDTKQQGM-TKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFN 326
Query: 138 QGSSGQMEVLVRKPPA 153
+ +E+ V
Sbjct: 327 --ETLSVELKVYNFTL 340
Score = 43.3 bits (102), Expect = 1e-04
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
V ++G L V +D G+Y C + L V
Sbjct: 292 SNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFN-ETLSVELKV 335
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 49.6 bits (119), Expect = 5e-08
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
C I+ VTW R LE ++ + L + + G Y C N
Sbjct: 22 VCKIENYDQSTQVTWYFGVRQLEN--SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVN 79
Query: 134 AHGTQGSSGQMEV 146
+G S ++ V
Sbjct: 80 DYGEDSSYAELFV 92
Score = 44.2 bits (105), Expect = 4e-06
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 165 KVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKN-RVKIV--GGNIT--IEGLRRVD 218
+ G V C+ E + T +TW L + + +I G ++ + ++D
Sbjct: 14 EEGGHVKYVCKI---ENYDQSTQVTW-YFGVRQLENSEKYEITYEDGVAILYVKDITKLD 69
Query: 219 FGYYECVVSNEVATIVQAAQLVVEGTQ 245
G Y C V N+ A+L V+G +
Sbjct: 70 DGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+ I + L + + D G Y C+V N GE + A L V+
Sbjct: 48 KYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDS-SYAELFVK 93
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 49.8 bits (119), Expect = 5e-08
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
P +T A T +V L W P +Y++ K G ++ +
Sbjct: 11 PPRALTLAAVTPRTVHLTWQP-----SAGATHYLVRCSPASPKGEEEEREVQVGRPEVLL 65
Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
+ L P YE V + +T P +
Sbjct: 66 DGLEPGRDYEVSVQSLRGPEGSEARG-IRART---PTSGPSS 103
Score = 45.6 bits (108), Expect = 2e-06
Identities = 17/115 (14%), Positives = 26/115 (22%), Gaps = 30/115 (26%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
PPR +++ V ++WQP YL
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPS-----------------------------AGATHYL 39
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
K G ++ ++ L P YE V I
Sbjct: 40 VRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRA 94
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 54.1 bits (130), Expect = 5e-08
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 236 AAQLVVEGTQPHAPYN--ITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWL 292
A + +P P I + E +V L W P GG + NY I RE W
Sbjct: 1 GAMVADVP-EPEPPRFPIIENILDE-AVILSWKPPALDGGSLV-TNYTIEKREAMGGSWS 57
Query: 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKPGPPRNVSV 351
P + T TI L YEF+++ +N+ G V G + R V
Sbjct: 58 PCAKSR--YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDV 115
Query: 352 TE 353
E
Sbjct: 116 DE 117
Score = 46.4 bits (110), Expect = 1e-05
Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 29/109 (26%)
Query: 341 PKPGPPRNVSVTEVN-NGFVISW-QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
P+P PPR + + ++SW P L+ SL+ Y I
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTI--------------------- 46
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
E RE W P + T TI L YEF+++ +N+ G
Sbjct: 47 ----EKREAMGGSWSPCAKSR--YTYTTIEGLRAGKQYEFRIIAENKHG 89
Score = 40.6 bits (95), Expect = 9e-04
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--G 206
P F +KP + G+S + +C + P +TW + D + G
Sbjct: 480 EAQPRFIVKPYGT-EVGEGQSANFYCRV---IASSPPVVTWHKDDRELKQSVKYMKRYNG 535
Query: 207 GNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
+ I ++ D G Y N T + L V
Sbjct: 536 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 39.4 bits (92), Expect = 0.002
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ + + +G L IN V DD G Y N G + +LNV
Sbjct: 528 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKE-EIVFLNV 572
Score = 38.7 bits (90), Expect = 0.004
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
C + A+ VTW KD R L+ Q+ + NG L RV + +G YT N
Sbjct: 503 YCRVIASSP-PVVTWHKDDRELK--QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
Query: 134 AHGTQGSSGQMEV 146
++GT+ + V
Sbjct: 560 SYGTKEEIVFLNV 572
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 49.6 bits (119), Expect = 5e-08
Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 11/100 (11%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV--- 205
+ P + ++ G G P W ++GV + ++ R+
Sbjct: 4 EAPKIFERIQSQ-TVGQGSDAHFRVRVV---GKPDPECEW-YKNGVKIERSDRIYWYWPE 58
Query: 206 GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
I + D N A L+V+
Sbjct: 59 DNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 44.2 bits (105), Expect = 4e-06
Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
+ + P + W K+ +E ++ L+ V N
Sbjct: 26 RVRVVGKPDPE-CEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI 84
Query: 135 HGTQGSSGQMEV 146
G S + V
Sbjct: 85 AGETSSHAFLLV 96
Score = 41.1 bits (97), Expect = 5e-05
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 11 RVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+D LVI V +DS M + N GE ++ A+L V+
Sbjct: 53 YWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLVQ 97
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 50.1 bits (120), Expect = 5e-08
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 19/115 (16%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
GSSG ++ + P E V + CE + W +DG
Sbjct: 1 GSSG---SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL----CRPWAEVRW-TKDGEE 52
Query: 197 LPKN-RVKIV--GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
+ ++ + + + + ++ D G Y C + +E A+ + V
Sbjct: 53 VVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESAS----FTVTVTEPPV 103
Score = 40.5 bits (95), Expect = 1e-04
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 52 NVEFPAKVTFTPTVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM 109
+ + + + Y+ V C + P + V WTKD + + +++
Sbjct: 7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAE-VRWTKDGEEVVE--SPALLLQ 62
Query: 110 QNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP 158
+ L+ V G Y C + S V V +PP I
Sbjct: 63 KEDTVRRLVLPAVQLEDSGEYLCEIDDE------SASFTVTVTEPPVRIIYS 108
Score = 40.1 bits (94), Expect = 2e-04
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
++++K+ LV+ V +DSG Y+CE+ + ++A + V P V +
Sbjct: 58 ALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASFTVTVTEPP-VRIIYSGP 110
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 51.7 bits (124), Expect = 5e-08
Identities = 22/155 (14%), Positives = 40/155 (25%), Gaps = 11/155 (7%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C N + L + K + +N G+Y+C
Sbjct: 24 CCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81
Query: 137 TQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
S ++++V P ++ P GE V +C T +
Sbjct: 82 WSEPSNLLDLVVTEMYDTPTLSVHPGPEVIS--GEKVTFYCRLD----TATSMFLLLKEG 135
Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
+ + V + + G Y C S
Sbjct: 136 RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSY 170
Score = 32.9 bits (75), Expect = 0.13
Identities = 21/133 (15%), Positives = 35/133 (26%), Gaps = 9/133 (6%)
Query: 20 LVINPVGSDDSGLYMCEVSNGIGEPQAAQA-YLNVE--FPAKVTFTPTVQYLPFRLQGVV 76
I + S +G Y C G + + L V + + +
Sbjct: 59 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTF 118
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA-H 135
C + K+ R + V V H+G Y C H
Sbjct: 119 YCR--LDTATSMFLLLKEGRSSHVQRGYGKV---QAEFPLGPVTTAHRGTYRCFGSYNNH 173
Query: 136 GTQGSSGQMEVLV 148
S +++LV
Sbjct: 174 AWSFPSEPVKLLV 186
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 49.6 bits (119), Expect = 6e-08
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 23/117 (19%)
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
G+ GSSG FT + + Q + + C+ + T+TW R+ +
Sbjct: 1 GSSGSSG--------ANCFTEELTNL-QVEEKGTAVFTCKTEHP----AATVTW-RKGLL 46
Query: 196 AL-PKNRVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH 247
L + + G + I L + D Y C + + AQL+V+G +
Sbjct: 47 ELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSR----AQLLVQGRRSG 99
Score = 36.5 bits (85), Expect = 0.002
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+ ++G L I+ + DS Y C++ ++A L V+
Sbjct: 53 KHQPSQEGLTLRLTISALEKADSDTYTCDIGQ-----AQSRAQLLVQ 94
Score = 33.8 bits (78), Expect = 0.021
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
C +P VTW K L + Q G L + + + YTC
Sbjct: 29 TCKT-EHPAAT-VTWRKGLLELRA--SGKHQPSQEGLTLRLTISALEKADSDTYTCD--- 81
Query: 134 AHGTQGSSGQMEVLVRKPPA 153
G S ++LV+ +
Sbjct: 82 -IGQAQSRA--QLLVQGRRS 98
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 51.7 bits (123), Expect = 8e-08
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 25/133 (18%)
Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN--NGFVISWQPPLE 367
T + ++G+ L+ + T KP P ++SV N FV+++
Sbjct: 80 TKKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHL 139
Query: 368 RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITI 427
+ + ++ + + YR++ +++ +
Sbjct: 140 QKKYV--KVLMH------------DVA---------YRQEKDENKWTHVNLSSTKLTLLQ 176
Query: 428 NRLTPATTYEFQV 440
+L PA YE +V
Sbjct: 177 RKLQPAAMYEIKV 189
Score = 46.7 bits (110), Expect = 4e-06
Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Query: 221 YYECVVSNEVATIVQAAQLVV--EGTQPHAPYNITGVATE--FSVTLEWLPGYSGGPDLK 276
+ + +V + + +P AP++++ V E + + + +K
Sbjct: 86 IGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVK 145
Query: 277 Q-NYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
+ + YR++ +++ + +L PA YE +V
Sbjct: 146 VLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 49.3 bits (118), Expect = 9e-08
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 21/110 (19%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
GSSG P FT + + G + + CE ++ + W ++ L
Sbjct: 1 GSSGSSG-----PARFTQDLKTK-EASEGATATLQCEL-----SKVAPVEW-KKGPETLR 48
Query: 198 PKNRVKIV--GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
R + G + I L D G Y C+ E + A L V
Sbjct: 49 DGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTS----ATLTVRA 94
Score = 39.7 bits (93), Expect = 2e-04
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
QC + V W K L + Q+G L ++ G Y+C
Sbjct: 29 QCELSKVAP---VEWKKGPETLRD--GGRYSLKQDGTRCELQIHDLSVADAGEYSCMC-- 81
Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKP 158
G + +S + VR PA +
Sbjct: 82 --GQERTSA--TLTVRALPARFTEG 102
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVT 60
R +K+DG L I+ + D+G Y C + A L V PA+ T
Sbjct: 52 RYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ-----ERTSATLTVRALPARFT 100
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 48.5 bits (116), Expect = 1e-07
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 24/113 (21%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
GSSG P E Q VG+ V+M E + + W ++GV L
Sbjct: 1 GSSGSSG-----PVLIVTPLEDQ-QVFVGDRVEMAVEV----SEEGAQVMW-MKNGVELT 49
Query: 199 KNRVKIVGGNITIEGLRRV---------DFGYYECVVSNEVATIVQAAQLVVE 242
+ +G R + D G Y+ + + A+L+VE
Sbjct: 50 REDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCE----AELIVE 98
Score = 44.2 bits (105), Expect = 4e-06
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 7 SLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
S + R KKDG L+ + V +D G Y + G +A L VE
Sbjct: 53 SFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG-----QCEAELIVE 98
Score = 32.7 bits (75), Expect = 0.050
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 89 VTWTKDKRLLEP--YQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGT 137
V W K+ L ++G L+F+ V Q +GRY
Sbjct: 39 VMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCE 92
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 52.2 bits (125), Expect = 1e-07
Identities = 52/264 (19%), Positives = 78/264 (29%), Gaps = 45/264 (17%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+CH F K+ R+ P + S + V H G YTC + H
Sbjct: 44 RCH--YRHRFNNFMLYKEDRIHIPIFHG---RIFQESFNMSPVTTAHAGNYTCRGSHPHS 98
Query: 137 TQGSSGQMEVL------VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
G S + + P+ P + + GE V + C +
Sbjct: 99 PTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKS--GERVILQCWSD----IMFEHFFLH 152
Query: 191 RRDGVALPKNRVKIVGG-----NITIEGLRRVDFGYYECVVSNEVATIVQAA-----QLV 240
+ P V + N +I + G Y C S +A +V
Sbjct: 153 KEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIV 212
Query: 241 VEGTQPHAPYNITG-----VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE-QGNKDWLPI 294
V T P+ +++ V SVTL S RE ++ LP
Sbjct: 213 V--TGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDM------YHLSREGGAHERRLPA 264
Query: 295 PVTPPGSTQITINRLTPAT---TY 315
+ Q L PAT TY
Sbjct: 265 VRKVNRTFQADF-PLGPATHGGTY 287
Score = 40.6 bits (95), Expect = 6e-04
Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 22/176 (12%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV-- 76
+ ++PV + +G Y C S+ + V VT L +V
Sbjct: 75 SFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVI--MVTGNHRKPSLLAHPGPLVKS 132
Query: 77 ------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT--RVNQNHQGRYT 128
QC F++ K+ +P + + F+ + G Y
Sbjct: 133 GERVILQCWSDIM--FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYR 190
Query: 129 CTPYNAHGTQGSSGQ---MEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQE 178
C H S ++++V P+ + +P Q GESV + C ++
Sbjct: 191 CYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQ--AGESVTLSCSSRS 244
Score = 37.5 bits (87), Expect = 0.006
Identities = 22/134 (16%), Positives = 36/134 (26%), Gaps = 18/134 (13%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQ--AYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
I P+ +G Y C S Q + L++ VT L + V
Sbjct: 175 NFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIV----VTGPYEKPSLSAQPGPKV 230
Query: 77 --------QCHIKANP-TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
C +++ + +++ E V + F H G Y
Sbjct: 231 QAGESVTLSCSSRSSYDMYH---LSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTY 287
Query: 128 TCTPYNAHGTQGSS 141
C H S
Sbjct: 288 RCFGSFRHSPYEWS 301
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 48.9 bits (117), Expect = 2e-07
Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 15/114 (13%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
GSSG ++ + E + + G S C + W D L
Sbjct: 1 GSSGSSGLVQGRRVHIIEDLEDV-DVQEGSSATFRCRIS---PANYEPVHW-FLDKTPLH 55
Query: 198 PKNRVKIV---GGNI--TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
+I GG T+ L D G ++ A+ A L V
Sbjct: 56 ANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRAS----AALRVTEKPS 105
Score = 42.8 bits (101), Expect = 2e-05
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
+C I V W DK L + +I G L ++ G
Sbjct: 34 RCRISPANYEP-VHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA--- 89
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKP 158
G Q +S + V KP F+
Sbjct: 90 -GDQRASAALRVTE-KPSVFSRSG 111
Score = 33.5 bits (77), Expect = 0.036
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 13 VIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT 62
+ + G L + + DSG E + Q A A L V F+
Sbjct: 62 IDAQPGGYHVLTLRQLALKDSGTIYFEAGD-----QRASAALRVT-EKPSVFS 108
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 52.4 bits (126), Expect = 2e-07
Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 12/123 (9%)
Query: 128 TC-TPYNAHGTQ----GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
TC TP G + + + G +V C A +G
Sbjct: 356 TCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRA---DGD 412
Query: 183 QKPTITWQRRDGVALP---KNRVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
P I W + R+ + G + + + D G Y C+ +N A
Sbjct: 413 PPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAH 472
Query: 239 LVV 241
L V
Sbjct: 473 LHV 475
Score = 44.7 bits (106), Expect = 4e-05
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 50 YLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IVV 108
Y ++ C +P + W ++ L ++ + V
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPA-ILWLSPRKHLVSAKSNGRLTV 437
Query: 109 MQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
+G+L G Y C NA G
Sbjct: 438 FPDGTLEVRYAQVQDNGTYLCIAANAGGN 466
Score = 44.7 bits (106), Expect = 5e-05
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
R+ + DGTL + D+G Y+C +N G + A+L+V
Sbjct: 432 NGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHV 475
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 48.1 bits (115), Expect = 2e-07
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 23/115 (20%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
GSSG T + E GE V++ CE E + + W ++G +
Sbjct: 1 GSSGS------SGIMVTKQLEDT-TAYCGERVELECEVSEDD----ANVKW-FKNGEEII 48
Query: 198 --PKNRVKIVG-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
PK+R +I G IEG + D Y + + ++ A+L V+
Sbjct: 49 PGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSS----AKLSVDLKSG 99
Score = 44.6 bits (106), Expect = 3e-06
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58
R I+ +G L+I D+ Y + G + A L+V+ +
Sbjct: 54 RYRIRVEGKKHILIIEGATKADAAEYSVMTTGG-----QSSAKLSVDLKSG 99
Score = 39.6 bits (93), Expect = 2e-04
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145
V W K+ + P + G L+ + Y+ SS ++
Sbjct: 38 VKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQ----SSAKLS 93
Query: 146 VLVRKPPA 153
V ++ P+
Sbjct: 94 VDLKSGPS 101
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 48.8 bits (116), Expect = 2e-07
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 244 TQPHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP-------- 293
T P+ P + A+ ++T+ W+ +Y + Y +
Sbjct: 14 TAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNSVDS 70
Query: 294 -IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRN 348
+ V T++ L T Y F V N+ G S +KT P P +
Sbjct: 71 WMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSR-NSEPTRLKTNSQPFKSGPSS 126
Score = 47.6 bits (113), Expect = 5e-07
Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 21/122 (17%)
Query: 341 PKPGPPR-NVSVTEV-NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
P PP + ++ + W I Y ++Y
Sbjct: 14 TAPNPPSIREELCTASHDTITVHWISD--DEFSISSYELQYTIFTG-------------- 57
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
W+ +P T++ L T Y F V N+ G S +K
Sbjct: 58 QANFISLYNSVDSWMIVPNIK--QNHYTVHGLQSGTRYIFIVKAINQAGSR-NSEPTRLK 114
Query: 459 TK 460
T
Sbjct: 115 TN 116
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 47.8 bits (113), Expect = 4e-07
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 17/103 (16%)
Query: 155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR--------------RDGVALPKN 200
+ P + VGE + ++C A I + RD +
Sbjct: 11 VLSPSHGIELSVGEKLVLNCTA---RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 201 RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
+K +TI+G+ R D G Y C S+ + T + + V
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110
Score = 43.2 bits (101), Expect = 1e-05
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
+ K TL I+ V D GLY C S+G+ + ++ V V F ++
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAFGSGME 121
Score = 38.2 bits (88), Expect = 0.001
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 12/94 (12%)
Query: 75 VVQCHIKANPTFQY-VTWTKD---------KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
V+ C + W Q+ + +L V ++ Q
Sbjct: 27 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 86
Query: 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP 158
G YTC + T+ V V + P
Sbjct: 87 GLYTCAASSGLMTK--KNSTFVRVHEKPFVAFGS 118
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 47.4 bits (113), Expect = 4e-07
Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 21/113 (18%)
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
G+ GSSG T + + M + GES C + + W G
Sbjct: 1 GSSGSSG--------HVGITKRLKTM-EVLEGESCSFECVL--SHESASDPAMW-TVGGK 48
Query: 196 AL-PKNRVKIVG-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
+ +R + G + D G V + A L+V
Sbjct: 49 TVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSK----ASLIVRE 97
Score = 39.7 bits (93), Expect = 2e-04
Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 9/80 (11%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
+C + WT + + + + G L+ + G +
Sbjct: 29 ECVLSHESASDPAMWTVGGKTVGS--SSRFQATRQGRKYILVVREAAPSDAGEVVFSV-- 84
Query: 134 AHGTQGSSGQMEVLVRKPPA 153
S + V R P+
Sbjct: 85 --RGLTSKASLIVRERSGPS 102
Score = 39.3 bits (92), Expect = 3e-04
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58
R + G LV+ D+G + V ++A L V +
Sbjct: 55 RFQATRQGRKYILVVREAAPSDAGEVVFSVRG-----LTSKASLIVRERSG 100
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 46.5 bits (111), Expect = 6e-07
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 15/98 (15%)
Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVG-G 207
+ + VGE+ E E + W + G L +I+ G
Sbjct: 4 ALIEVEKPLYGV-EVFVGETAHFEIELSEPD----VHGQW-KLKGQPLAASPDCEIIEDG 57
Query: 208 NI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+ + G +N + A L V+
Sbjct: 58 KKHILILHNCQLGMTGEVSFQAANTKSA----ANLKVK 91
Score = 38.8 bits (91), Expect = 3e-04
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
I +DG L+++ +G + +N + A L V+
Sbjct: 50 DCEIIEDGKKHILILHNCQLGMTGEVSFQAAN-----TKSAANLKVK 91
Score = 36.9 bits (86), Expect = 0.001
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGT 137
W + L + D ++++G L+ G + N
Sbjct: 36 GQWKLKGQPLAA--SPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSA 85
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 47.0 bits (112), Expect = 6e-07
Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 21/119 (17%)
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
G+ GSSG + K E CE +K T W ++GV
Sbjct: 1 GSSGSSG--------QLEVLQDIADL-TVKAAEQAVFKCEV----SDEKVTGKW-YKNGV 46
Query: 196 AL-PKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
+ P R+ I + I+ +R D G Y V ++ +A+L + P
Sbjct: 47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLEIKVSGP 103
Score = 41.6 bits (98), Expect = 5e-05
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
R+ I G LVI+ V +D G Y A LN KV+
Sbjct: 53 RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALS---LSAKLNFL-EIKVS 101
Score = 40.4 bits (95), Expect = 1e-04
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145
W K+ + P +K I + G L+ V +G YT P + S ++
Sbjct: 39 GKWYKNGVEVRP--SKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLN 94
Query: 146 VLVRKPPAFTIKPEA 160
L P +
Sbjct: 95 FL----EIKVSGPSS 105
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 49.6 bits (118), Expect = 6e-07
Identities = 26/192 (13%), Positives = 53/192 (27%), Gaps = 17/192 (8%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQA----YLNVEFPAKVTFTPTVQYLPFRLQG 74
I P+ D +G Y C S Q + + + P++ P
Sbjct: 63 NFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGL---YEKPSLSAQPGPTVL 119
Query: 75 V-----VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
+ C +++ + +++ E + V F H G Y C
Sbjct: 120 AGESVTLSCSSRSS--YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRC 177
Query: 130 TPYNAHGTQGSSGQ---MEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
S + V V P+ + + G +H A++ +++
Sbjct: 178 FGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDL 237
Query: 187 ITWQRRDGVALP 198
G +
Sbjct: 238 NLDLVPRGSSSH 249
Score = 38.8 bits (90), Expect = 0.002
Identities = 31/206 (15%), Positives = 63/206 (30%), Gaps = 28/206 (13%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEP--YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
QC ++ FQ+ ++ + + + + + + Q+ G Y C
Sbjct: 27 QCW--SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVT 84
Query: 135 HGTQGSSGQ---MEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
H S +++++ + P+ + +P GESV + C ++ +
Sbjct: 85 HSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVL--AGESVTLSCSSRSSYDM-----Y 137
Query: 189 WQRRDGVALPK--NRVKIVGGNITIE-GLRRV-DFGYYECVVSNEVATIVQAA-----QL 239
R+G A + + V G + L G Y C S + + +
Sbjct: 138 HLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPLLV 197
Query: 240 VVEGT--QPHAPYNITGVATEFSVTL 263
V G T L
Sbjct: 198 SVTGNPSNSWPSPTEPSSETGNPRHL 223
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 48.7 bits (116), Expect = 6e-07
Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 20/155 (12%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C P K Q L + ++ GRY C+ N
Sbjct: 28 RCQ--GPPGVDLYRLEKLSSSRYQDQ---------AVLFIPAMKRSLAGRYRCSYQNGSL 76
Query: 137 TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
S Q+E++ P+ + +P G V + C+ + +
Sbjct: 77 WSLPSDQLELVATGVFAKPSLSAQPGPAVSS--GGDVTLQCQTRY----GFDQFALYKEG 130
Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
A KN + + I + G Y C +
Sbjct: 131 DPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFS 165
Score = 36.7 bits (85), Expect = 0.006
Identities = 23/133 (17%), Positives = 36/133 (27%), Gaps = 20/133 (15%)
Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQA-YLNVEFPAKVTFTPTVQYLPFRLQGVV 76
L I + +G Y C NG + L P++ P V
Sbjct: 52 AVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGV---FAKPSLSAQP---GPAV 105
Query: 77 --------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
QC + F K+ PY+ + + V H G Y
Sbjct: 106 SSGGDVTLQCQTR--YGFDQFALYKEGDPA-PYKNPERWYRAS--FPIITVTAAHSGTYR 160
Query: 129 CTPYNAHGTQGSS 141
C +++ S
Sbjct: 161 CYSFSSRDPYLWS 173
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 46.6 bits (111), Expect = 6e-07
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV--GG 207
AF+ KP ++ + G E + A + W +R G + N+ + G
Sbjct: 8 VSAFSKKPRSV-EVAAGSPAVFEAETERAG----VKVRW-QRGGSDISASNKYGLATEGT 61
Query: 208 N--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+T+ + D G Y + + L V
Sbjct: 62 RHTLTVREVGPADQGSYAVIAGSSKVK----FDLKVI 94
Score = 37.7 bits (88), Expect = 7e-04
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+ + +G TL + VG D G Y + + L V
Sbjct: 53 KYGLATEGTRHTLTVREVGPADQGSYAVIAGS-----SKVKFDLKVI 94
Score = 33.1 bits (76), Expect = 0.037
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 9/61 (14%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145
V W + + + + G +L V QG Y G+ ++
Sbjct: 39 VRWQRGGSDISA--SNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLK 92
Query: 146 V 146
V
Sbjct: 93 V 93
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 48.7 bits (115), Expect = 7e-07
Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 41/183 (22%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
+ C + ++ + W K+ + L K +V+ F+ V + G Y C +
Sbjct: 18 ELTCPLDSDEN---LKWEKNGQELPQKHDKHLVLQD-----FSEVEDS--GYYVCYTPAS 67
Query: 135 HGT--------------QGSSGQMEVLVRKPPAFTIKPEA--------MYQRKVGESVDM 172
+ + +K A + + + SV +
Sbjct: 68 NKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLL 127
Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
C G TI W + DG + + + + + G Y+C + E +
Sbjct: 128 TC------GLTDKTIKWLK-DGSII--SPLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
Query: 233 IVQ 235
+Q
Sbjct: 179 PLQ 181
Score = 34.1 bits (77), Expect = 0.058
Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 40/158 (25%)
Query: 17 DGTLVINPVG-SDDSGLYMCEVSNGIG----------------EPQAAQAYLNVEFPAKV 59
D LV+ +DSG Y+C + AA+ + AK
Sbjct: 43 DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKK 102
Query: 60 TFTPTVQY-LPFRLQGV-------VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN 111
+ T + ++ G + C + + W KD ++ P
Sbjct: 103 DGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKT----IKWLKDGSIISPLNAT------K 152
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
+ ++ +G Y C G + +S ++V R
Sbjct: 153 NTWNLGNNAKDPRGTYQC-----QGAKETSNPLQVYYR 185
Score = 31.4 bits (70), Expect = 0.35
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEP 44
T + D G Y C+ + P
Sbjct: 150 ATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 46.5 bits (110), Expect = 8e-07
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 27/107 (25%)
Query: 342 KPGPPRNVSVTEVNNG---FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
KP PP NV V + ++WQ P + + +K+ +R
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTP-STWPDPESFPLKF------------FLR---- 49
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 445
YR W + ++ T TI Y QV K+
Sbjct: 50 -----YRPLILDQWQHVELSN--GTAHTITDAYAGKEYIIQVAAKDN 89
Score = 40.0 bits (93), Expect = 2e-04
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 245 QPHAPYNITGVATE---FSVTLEWLPGYSGGPD--LKQNYVIWYREQGNKDWLPIPVTPP 299
+P P N+ + + W + + + YR W + ++
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSN- 65
Query: 300 GSTQITINRLTPATTYEFQVVGKNE 324
T TI Y QV K+
Sbjct: 66 -GTAHTITDAYAGKEYIIQVAAKDN 89
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 45.9 bits (109), Expect = 1e-06
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
G+ GSSG++ ++ PA Q + G S + CE +A+ +TW +DG
Sbjct: 1 GSSGSSGKVVF-AKEQPAHR-----EVQAEAGASATLSCEVAQAQ----TEVTW-YKDGK 49
Query: 196 AL-PKNRVKIV--GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
L ++V++ G + ++ + + G Y C + + +L V G
Sbjct: 50 KLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLS----FRLQVAG 98
Score = 38.9 bits (91), Expect = 4e-04
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+V ++ G LV+ G ++G Y CE Q L V
Sbjct: 56 KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG-----QQLSFRLQVA 97
Score = 36.6 bits (85), Expect = 0.002
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT 130
C + A + VTW KD + L + + V G L+ + Q G Y+C
Sbjct: 32 SCEV-AQAQTE-VTWYKDGKKLSS--SSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE 84
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 48.2 bits (114), Expect = 1e-06
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 10/144 (6%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
D +L + + +D G Y C ++ +L V + T L +
Sbjct: 77 DASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMA 136
Query: 77 QCHI---KANPTFQYVTWTKDKRLLEPYQT----KDIVVMQNGSLLFTRVNQNHQGRYTC 129
+C + +TW D + V + +Q + TC
Sbjct: 137 RCVSTGGRPPAQ---ITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTC 193
Query: 130 TPYNAHGTQGSSGQMEVLVRKPPA 153
+ + + + V P
Sbjct: 194 KVEHESFEKPQLLTVSLTVYYPHH 217
Score = 42.4 bits (99), Expect = 1e-04
Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 34/182 (18%)
Query: 78 CHIKANPT----FQYVTWTKDKR--------------LLEPYQTKDIVV-----MQNGSL 114
C+++ +TW + E + + + +++ SL
Sbjct: 21 CYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASL 80
Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHC 174
+ +G YTC + S + + V P T + + + C
Sbjct: 81 RMFGLRVEDEGSYTCL-FVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTG-EPVPMARC 138
Query: 175 EAQEAEGTQKPTITWQRRDG-------VALPKNRVKIVGGNITIEGLRRVDFGYYECVVS 227
+ G ITW G V + V + +VD C V
Sbjct: 139 VS--TGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVE 196
Query: 228 NE 229
+E
Sbjct: 197 HE 198
Score = 30.0 bits (67), Expect = 1.2
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 26/118 (22%)
Query: 166 VGESVDMHC--EAQEAEGTQKPTITWQRRDG-------------VALPKNRVKIVG---- 206
+G+SV + C + E T +TW R R++ V
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 207 -----GNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEGTQPHAPYNITGVATE 258
++ + GLR D G Y C+ L V +P + V
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA-KPQNTAEVQKVQLT 129
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 46.7 bits (110), Expect = 1e-06
Identities = 20/128 (15%), Positives = 32/128 (25%), Gaps = 40/128 (31%)
Query: 151 PPAFTIKPEAMYQR----KVGESVDMHCEAQEAEGTQKPTITWQRRDG------------ 194
PP + G + + G PT+ WQ+
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPI---SGDPAPTVIWQKAITQGNKAPARPAPD 69
Query: 195 -----------------VALPKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATI 233
+ + RV++ T+EG + D G Y V N V
Sbjct: 70 APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 129
Query: 234 VQAAQLVV 241
+ V
Sbjct: 130 QVNLTVKV 137
Score = 37.8 bits (87), Expect = 0.001
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 5 VGSLETRVVI---KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ E RV + K + +D G+Y V N +GE Q + V
Sbjct: 87 LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ-VNLTVKV 137
Score = 29.3 bits (65), Expect = 1.2
Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 31/103 (30%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLE--------------------------PYQTKDIVV 108
+ I +P V W K +T+ V
Sbjct: 37 RLDVPISGDPAPT-VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVR 95
Query: 109 MQNG----SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147
++ + +G YT T N G + ++V+
Sbjct: 96 VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 45.4 bits (108), Expect = 2e-06
Identities = 31/116 (26%), Positives = 42/116 (36%), Gaps = 21/116 (18%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
GSSG P A E GE V++ CE P + W +D A+
Sbjct: 1 GSSGSSG-----PAAIIKPLEDQ-WVAPGEDVELRCEL---SRAGTP-VHW-LKDRKAIR 49
Query: 199 KN-RVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
K+ + +V + I G D G Y C V +T A L VE + P
Sbjct: 50 KSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST----ASLHVEE-KASGP 100
Score = 41.5 bits (98), Expect = 4e-05
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+ + +G LVI D+G Y CEV A L+VE
Sbjct: 53 KYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST-----ASLHVE 94
Score = 37.7 bits (88), Expect = 9e-04
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 13/80 (16%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
+C + T V W KD++ + ++ V+ G L+ + G YTC
Sbjct: 29 RCELSRAGT--PVHWLKDRKAIRK--SQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA 84
Query: 134 AHGTQGSSGQMEVLVRKPPA 153
+ T + V + +
Sbjct: 85 SKST------ASLHVEEKAS 98
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 45.0 bits (107), Expect = 2e-06
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 21/116 (18%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
GSSG P F + + + G + + C + W L
Sbjct: 1 GSSGS-----SGPVRFQEALKDL-EVLEGGAATLRCVLSSVA----APVKW-CYGNNVLR 49
Query: 198 PKNRVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
P ++ + G + + LR D G Y C ++ + A L V P P
Sbjct: 50 PGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTS----ATLTVTAL-PSGP 100
Score = 36.9 bits (86), Expect = 0.002
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 13/80 (16%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
+C + + V W +L P + Q G L+ + GRY+C+
Sbjct: 29 RCVLSSVA--APVKWCYGNNVLRP--GDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF-- 82
Query: 134 AHGTQGSSGQMEVLVRKPPA 153
G Q +S + V P+
Sbjct: 83 --GDQTTSA--TLTVTALPS 98
Score = 36.5 bits (85), Expect = 0.003
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
+ ++++G LV+ + DSG Y C + Q A L V
Sbjct: 53 KYSLRQEGAMLELVVRNLRPQDSGRYSCSFGD-----QTTSATLTVT 94
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 45.0 bits (107), Expect = 2e-06
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 20/109 (18%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
GSSG +G+ + + CE E W ++G+ +
Sbjct: 1 GSSGS------SGLKILTPLTDQ-TVNLGKEICLKCEISE-----NIPGKW-TKNGLPVQ 47
Query: 198 PKNRVKIV--GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
+R+K+V G + I D G Y T+ A++ V
Sbjct: 48 ESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTL--PAKVHVI 94
Score = 44.6 bits (106), Expect = 3e-06
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
+C I N WTK+ ++ + + V+Q G L+ +G Y P
Sbjct: 28 KCEISENIP---GKWTKNGLPVQE--SDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA 82
Query: 134 AHGTQGSSGQMEVLVRKPPA 153
+ T ++ V+ P+
Sbjct: 83 YNVT--LPAKVHVIS--GPS 98
Score = 43.1 bits (102), Expect = 1e-05
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
R+ + + G LVI ++D G Y+ A ++V
Sbjct: 51 RLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVT---LPAKVHVISG 96
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 46.9 bits (111), Expect = 3e-06
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 16/140 (11%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-TPTVQYL 68
T I + ++VI + D G Y C V + + V K F TP++
Sbjct: 57 TIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF 116
Query: 69 PFRLQGVVQCHIKAN-----PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT-----R 118
+ + + P ++W ++ L T + L+
Sbjct: 117 EIPTSNIRRIICSTSGGFPEPH---LSWLENGEELNAINTTVSQDPETE--LYAVSSKLD 171
Query: 119 VNQNHQGRYTCTPYNAHGTQ 138
N + C H
Sbjct: 172 FNMTTNHSFMCLIKYGHLRV 191
Score = 40.4 bits (94), Expect = 5e-04
Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 23/162 (14%)
Query: 88 YVTWTKDKRLLEPYQTKDIVVMQ------------NGSLLFTRVNQNHQGRYTCTPYNAH 135
+ W K+K+++ + D+ + N S++ + + +G Y C
Sbjct: 29 RIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYE 88
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
+ + A P + C G +P ++W +G
Sbjct: 89 KDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTS--GGFPEPHLSW-LENG 145
Query: 195 VALPKNRVKIV----GGNITIEG---LRRVDFGYYECVVSNE 229
L + + + C++
Sbjct: 146 EELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 45.3 bits (107), Expect = 3e-06
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 60 TFTPTVQYL--PFRLQGV-VQCHIKANPTFQYVTWTKDKRLLEP--------YQTKDIVV 108
+ P L + + + P + W + +L +
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 109 MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
+++G L + + G YT N G +S + P F PE
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQ--ASASIMAAFMDNP-FEFNPE 107
Score = 45.3 bits (107), Expect = 3e-06
Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 24/127 (18%)
Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR--------- 201
PA Q + C +G P++ W +G L +
Sbjct: 3 MPASV-------QLHTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEP 54
Query: 202 ---VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG----TQPHAPYNITG 254
+ G + + V+ G Y + +N + P P T
Sbjct: 55 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTN 114
Query: 255 VATEFSV 261
+ V
Sbjct: 115 STSGDPV 121
Score = 35.3 bits (81), Expect = 0.009
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPTV 65
+ G L +N ++G Y +N G+ +A + P + +
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEFNPEDPI 110
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 46.8 bits (111), Expect = 3e-06
Identities = 23/162 (14%), Positives = 43/162 (26%), Gaps = 19/162 (11%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
+C Q K+ + + ++H GRY C Y+ G
Sbjct: 25 RCQ--GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82
Query: 137 TQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
S +E++V P + P + GE+V + C ++ +
Sbjct: 83 WSEPSDPLELVVTGFYNKPTLSALPSPVVTS--GENVTLQCGSRLRFDR-----FILTEE 135
Query: 194 GVALP---KNRVKIVGGNI----TIEGLRRVDFGYYECVVSN 228
G + G + + C S
Sbjct: 136 GDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSR 177
Score = 40.6 bits (95), Expect = 4e-04
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 10/130 (7%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQ---AAQAYLNVEFPAKVTFTPTVQYLPFRLQGV 75
I + +G Y C + G + + + + +
Sbjct: 59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVT 118
Query: 76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS----LLFTRVNQNHQGRYTCTP 131
+QC + F T++ + T D + +G V +H+ C
Sbjct: 119 LQCGSRLR--FDRFILTEEGDH-KLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
Query: 132 YNAHGTQGSS 141
H Q S
Sbjct: 176 SRRHILQVWS 185
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 46.4 bits (110), Expect = 5e-06
Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 18/161 (11%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
C + K++ + + + +++ GRY C + G
Sbjct: 25 WCQ--GTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82
Query: 137 TQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
S +E+++ P + P + G+SV + C+++ + T ++
Sbjct: 83 WSQPSDPLELVMTGAYSKPTLSALPSPLVT--SGKSVTLLCQSR----SPMDTFLLC-KE 135
Query: 194 GVALPKNRVKIVGGNI------TIEGLRRVDFGYYECVVSN 228
A P ++ G + + V G Y C S+
Sbjct: 136 RAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSH 176
Score = 32.9 bits (75), Expect = 0.12
Identities = 24/138 (17%), Positives = 38/138 (27%), Gaps = 19/138 (13%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQA-YLNVEFPAKVTFTPTVQYLPFRLQ 73
K I + D +G Y C + +G Q + L + PT+ LP
Sbjct: 55 KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMT---GAYSKPTLSALP---S 108
Query: 74 GVV--------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT--RVNQNH 123
+V C ++ K++ + Q F V H
Sbjct: 109 PLVTSGKSVTLLCQSRSP--MDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVH 166
Query: 124 QGRYTCTPYNAHGTQGSS 141
G Y C + S
Sbjct: 167 GGTYRCFSSHGFSHYLLS 184
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 46.6 bits (110), Expect = 5e-06
Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 18/137 (13%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV-VQ 77
L I+ V + DSG Y+C +G +A + ++ A + V ++ G+ ++
Sbjct: 84 ALRIHNVTASDSGKYLCYFQDGDFY---EKALVELKVAALGS-DLHVDVKGYKDGGIHLE 139
Query: 78 CHIKAN---PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT-----RVNQNHQGRYTC 129
C P + W+ +K P V+ +G L+ + + +C
Sbjct: 140 CRSTGWYPQPQ---IQWSNNKGENIPTVEA--PVVADGVGLYAVAASVIMRGSSGEGVSC 194
Query: 130 TPYNAHGTQGSSGQMEV 146
T ++ + + +
Sbjct: 195 TIRSSLLGLEKTASISI 211
Score = 45.9 bits (108), Expect = 8e-06
Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 13/133 (9%)
Query: 104 KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQ 163
+D + +L V + G+Y C + G + ++ K A +
Sbjct: 75 RDGITAGKAALRIHNVTASDSGKYLC-----YFQDGDFYEKALVELKVAALGSDLHVDVK 129
Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---GGNITIEG---LRRV 217
+ + C + +P I W G +P +V G + +R
Sbjct: 130 GYKDGGIHLECRS--TGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGS 187
Query: 218 DFGYYECVVSNEV 230
C + + +
Sbjct: 188 SGEGVSCTIRSSL 200
Score = 43.2 bits (101), Expect = 7e-05
Identities = 27/179 (15%), Positives = 44/179 (24%), Gaps = 48/179 (26%)
Query: 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR-------- 191
+ Q VL P VGE D+ C + + W
Sbjct: 1 ADLQFSVLG---------PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVN 51
Query: 192 --RDGVALP-------KNRVKIVGGN-------ITIEGLRRVDFGYYECVVSNEVATIVQ 235
DG + + R I+ + I + D G Y C + +
Sbjct: 52 VYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY-EK 110
Query: 236 AAQLVVEGTQPHAPYNITGVATEFSVTLE-----WLPGYSGGPDLKQNYVIWYREQGNK 289
A + + + + LE W P Q + W +G
Sbjct: 111 ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYP---------QPQIQWSNNKGEN 160
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 43.4 bits (102), Expect = 1e-05
Identities = 12/108 (11%), Positives = 25/108 (23%), Gaps = 21/108 (19%)
Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
+SVT+V + ++W+ P +L+++
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPPGA---FDSFLLRFGVPSP----------------- 48
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
+ P + L T Y + G
Sbjct: 49 STLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKA 96
Score = 42.3 bits (99), Expect = 3e-05
Identities = 15/97 (15%), Positives = 23/97 (23%), Gaps = 12/97 (12%)
Query: 256 ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT--------PPGSTQITIN 307
T S+ L W P ++++ + P P P +
Sbjct: 20 VTTSSLRLNWEAP----PGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLR 75
Query: 308 RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
L T Y + G GP G
Sbjct: 76 DLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPSSG 112
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 45.6 bits (107), Expect = 1e-05
Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 20/138 (14%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV----EFPAKVTFTPTVQ 66
+ G LV+ D Y+C V G A A LNV E T+
Sbjct: 70 PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLS 129
Query: 67 YLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEP--------YQTKDIVVMQNG----- 112
+ Q + C+ + NP + +TW ++ + LE Y T V +G
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPK-ITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188
Query: 113 -SLLFTRVNQNHQGRYTC 129
+L + + C
Sbjct: 189 STLYLRLRKDDRDASFHC 206
Score = 31.3 bits (70), Expect = 0.55
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 25/122 (20%)
Query: 166 VGESVDMHCEA------------QEAEGTQKPTITWQRRDGVALPKNRVKIVG------- 206
G+SV + C +P + G L G
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 207 ---GNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEGTQPHAPYNITGVATEFSVT 262
G + + + D Y CVV A +A A+L V +P A ++ SV
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA-KPEATE-VSPNKGTLSVM 131
Query: 263 LE 264
+
Sbjct: 132 ED 133
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 44.9 bits (105), Expect = 2e-05
Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 6/142 (4%)
Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG 207
++ P PE + +G S + C A+ ++ W R +L +
Sbjct: 3 LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRG--ASVQW-RGLDTSLGAVQSDTGRS 59
Query: 208 NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLP 267
+T+ G CV S T QL+V + + +
Sbjct: 60 VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPG-DPEVACTA 118
Query: 268 GYSGGPDLKQNYVIWYREQGNK 289
+ N + + G +
Sbjct: 119 --HKVTPVDPNALSFSLLVGGQ 138
Score = 42.2 bits (98), Expect = 1e-04
Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 9/120 (7%)
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
+ C + V W L Q+ L + + G C
Sbjct: 26 QLTCRLACADRGASVQWRGLDTSLGAVQSDT----GRSVLTVRNASLSAAGTRVCVGSCG 81
Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
T + Q+ V P T+ P A+ V ++ C A + +++ G
Sbjct: 82 GRTFQHTVQLLVY-AFPNQLTVSPAAL----VPGDPEVACTAHKVTPVDPNALSFSLLVG 136
Score = 33.7 bits (76), Expect = 0.077
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 9/99 (9%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPTV 65
SL L + +G +C S G Q L V FP ++T +P
Sbjct: 48 SLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT-VQLLVYAFPNQLTVSPAA 106
Query: 66 QYLPFRLQGVVQCHIK----ANPTFQYVTWTKDKRLLEP 100
V C +P + + LE
Sbjct: 107 ---LVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEG 142
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 46.3 bits (108), Expect = 2e-05
Identities = 14/114 (12%), Positives = 31/114 (27%), Gaps = 4/114 (3%)
Query: 73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT-- 130
G + V W +L+ ++ +M +LL +++ G Y C
Sbjct: 548 GGTAELKCSQKSNLARVFWKFQNGVLKA-ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSE 606
Query: 131 -PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
+ + V+ P + P + G + +
Sbjct: 607 ERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTKHHH 660
Score = 34.0 bits (76), Expect = 0.12
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 162 YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIVGGNITIEGLRRVDF 219
+ K G + ++ C + + + W+ ++GV ++ + N+ I L D
Sbjct: 543 HFFKHGGTAELKCSQK----SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDS 598
Query: 220 GYYECV-----VSNEVATIVQAAQLVVE 242
G Y+C+ + V +V L V+
Sbjct: 599 GVYQCLSEERVKNKTVFQVVAKHVLEVK 626
Score = 32.0 bits (71), Expect = 0.52
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCE-VSNGIGEPQA---AQAYLNVEFPA 57
N + + + + L+I + DSG+Y C + A+ L V+
Sbjct: 570 NGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVP 629
Query: 58 KVTFTPTVQ 66
K PT+
Sbjct: 630 KPVVAPTLS 638
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 44.8 bits (105), Expect = 2e-05
Identities = 17/128 (13%), Positives = 31/128 (24%), Gaps = 8/128 (6%)
Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS--SGQMEVLVRKP-PAFTIKPEAMYQRKV 166
+N SL G Y + S ++ + V I +
Sbjct: 80 KNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLE--S 137
Query: 167 GESVDMHCEAQ-EAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECV 225
G + C E T +W P + +T+ C
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNAL--SPLDPETTRSSELTLTPRPEDHGTNLTCQ 195
Query: 226 VSNEVATI 233
+ + A +
Sbjct: 196 MKRQGAQV 203
Score = 44.4 bits (104), Expect = 2e-05
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 7/131 (5%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGE---PQAAQAYLNVEFPAKVTFTPTVQYLPFR 71
KK+ +L I +D+G Y V G Q + L V + ++ L
Sbjct: 79 KKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138
Query: 72 LQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
+ C + + +T++ L P + ++ L T ++H TC
Sbjct: 139 RPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE---TTRSSELTLTPRPEDHGTNLTCQ 195
Query: 131 PYNAHGTQGSS 141
+
Sbjct: 196 MKRQGAQVTTE 206
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 42.0 bits (98), Expect = 4e-05
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
N + +++ L + V G Y C +SN G + A L +
Sbjct: 60 NYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 41.2 bits (96), Expect = 7e-05
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 19/105 (18%)
Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ-RRDGVALPK----------- 199
P T++PE G V C A + +T+ D AL
Sbjct: 11 PQITVQPETQ-SAIXGSDVSFTCSA---ASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 200 --NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVV 241
+ + + + G Y+CV+SN + A L +
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 35.8 bits (82), Expect = 0.006
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 77 QCHIKANPTFQ-YVTWTKDKRLLEP---------YQTKDIVVMQNGSLLFTRVNQNHQGR 126
C ++ W D L+ ++ L V +G
Sbjct: 31 TCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGX 90
Query: 127 YTCTPYNAHGTQGSS 141
Y C N G+ S
Sbjct: 91 YQCVISNHFGSSYSV 105
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 42.3 bits (99), Expect = 4e-05
Identities = 15/106 (14%), Positives = 42/106 (39%), Gaps = 18/106 (16%)
Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG--------VALPKNRVK 203
+ T E + + G+++ + C + ++ W G L ++ +
Sbjct: 2 GSLTNHTETI-TVEEGQTLTLKCVT---SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQ 57
Query: 204 IV-----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
++ +IT+ + D G Y+C+ ++ + + +++V T
Sbjct: 58 LLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLAT 102
Score = 41.1 bits (96), Expect = 1e-04
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
++ + V D G+Y C + + + V K F
Sbjct: 64 NQLSITVPNVTLQDEGVYKCLHYS--DSVSTKEVKVIVLATMKGEFCR 109
Score = 32.3 bits (73), Expect = 0.12
Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 12/92 (13%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIV----------VMQNGSLLFTRVNQNHQGR 126
+C + W ++ S+ V +G
Sbjct: 22 KCVTSLRKNSS-LQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGV 80
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP 158
Y C + + ++ VL F P
Sbjct: 81 YKCL-HYSDSVSTKEVKVIVLATMKGEFCRYP 111
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 41.7 bits (97), Expect = 5e-05
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
GSSG F KP+++ + G+ + + E KPTI W + + L
Sbjct: 1 GSSGSSGA-EEPTGVFLKKPDSV-SVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELG 58
Query: 199 KN-------------RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
+ + I + D GYY V + + VE +
Sbjct: 59 SKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 32.9 bits (74), Expect = 0.071
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
L I V D G Y EV ++VE P
Sbjct: 81 ELHIGKVVLGDRGYYRLEVKAKDTCDSCG-FNIDVEAP 117
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 41.5 bits (97), Expect = 9e-05
Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 38/147 (25%)
Query: 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR-------- 191
SGQ V+ P + VG+ ++ C + + W R
Sbjct: 3 GSGQFRVIG---------PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVH 53
Query: 192 --RDGVALP-------KNRVKIVG-----GN--ITIEGLRRVDFGYYECVVSNEVATIVQ 235
R+G + R +++ G + I+ +R D G Y C +
Sbjct: 54 LYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEA 113
Query: 236 AAQLVVEGTQPHAPYNITGVATEFSVT 262
A +L V P+ S
Sbjct: 114 AVELKV-----EDPFYWINPGRSRSHH 135
Score = 30.7 bits (69), Expect = 0.43
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
L I V D G Y C + + +AA L VE P
Sbjct: 84 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAA-VELKVEDP 122
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 42.0 bits (98), Expect = 2e-04
Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 46/219 (21%)
Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG-NKDWLPIPVTPPGSTQIT- 305
P N+T ++ FSV L WLPG D+ Y + Y+ + W +
Sbjct: 8 PPQNVTLLSQNFSVYLTWLPGLGNPQDV--TYFVAYQSSPTRRRWREV----EECAGTKE 61
Query: 306 -------INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVSVTEV 354
+ + ++ +V + S V + +P PP + +T+
Sbjct: 62 LLCSMMCLKKQDLYNKFKGRVRTVSP---SSKSPWVESEYLDYLFEVEPAPPV-LVLTQT 117
Query: 355 NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414
+ L + +KY + ++G +
Sbjct: 118 EEILSANATYQLPPC--MPPLDLKYEV---------------------AFWKEGAGNKTL 154
Query: 415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
PVTP G + + + S
Sbjct: 155 FPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYSK 193
Score = 33.5 bits (76), Expect = 0.090
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 251 NITGVATEFSVTLEW-LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRL 309
+T S + LP DLK Y + + ++G + PVTP G +
Sbjct: 113 VLTQTEEILSANATYQLPPCMPPLDLK--YEVAFWKEGAGNKTLFPVTPHGQPVQITLQP 170
Query: 310 TPATTYEFQVVGKNELGD---GMLSNIVVVKTKGPKP 343
+ + S + P+
Sbjct: 171 AASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEA 207
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 39.8 bits (93), Expect = 2e-04
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDG--------VALPKNRVKIVGG-----NITIE 212
G + + C + ++ W AL NR+++V +I++
Sbjct: 20 EGGTAILTCRV---DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76
Query: 213 GLRRVDFGYYECVVSNEVATIVQAAQLVV 241
+ D G Y C + A L V
Sbjct: 77 DVSLSDEGQYTCSLFTM-PVKTSKAYLTV 104
Score = 35.6 bits (82), Expect = 0.005
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 2 NTKVGSLETRVVIKKDG----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ K + R+ + + ++ ++ V D G Y C + + ++AYL V
Sbjct: 51 DDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT--MPVKTSKAYLTV 104
Score = 29.1 bits (65), Expect = 1.2
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 77 QCHIKANPTFQYVTWTKDKRLL----EPYQTKD--IVVMQNG----SLLFTRVNQNHQGR 126
C + N + W+ + + +D I +++ S+ + V+ + +G+
Sbjct: 27 TCRVDQNDNTS-LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQ 85
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPP 152
YTC+ + S + VL P
Sbjct: 86 YTCS-LFTMPVKTSKAYLTVLG--VP 108
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 39.9 bits (93), Expect = 2e-04
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
RV L + + +D+G Y C + +L V
Sbjct: 64 RVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
Score = 35.3 bits (81), Expect = 0.009
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 13/89 (14%)
Query: 77 QCHIKA-NPTFQYVTWTKDKRLLEPYQTKD-----------IVVMQNGSLLFTRVNQNHQ 124
QCH+ + V W + +LL + L + N
Sbjct: 24 QCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDT 83
Query: 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153
G Y C Y+ + +G++ + V +
Sbjct: 84 GEYFCI-YHTYPDGTYTGRIFLEVLESSV 111
Score = 35.3 bits (81), Expect = 0.010
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-------------KNRVKIVG-GNIT 210
+ G S+ + C Q + W+++D + K+RV +T
Sbjct: 16 EKGGSIILQCHLSST-TAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLT 74
Query: 211 IEGLRRVDFGYYECVVSN 228
++ L D G Y C+
Sbjct: 75 LQSLTVNDTGEYFCIYHT 92
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 39.3 bits (91), Expect = 3e-04
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 244 TQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
+ +++T V + S+TL W + NY G D + V+
Sbjct: 6 SGAIQVFDVTAVNISATSLTLIWKVSDNESS---SNYTYKIHVAGETDSSNLNVS---EP 59
Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP 345
+ I L +T Y V +G + V T GP
Sbjct: 60 RAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVH-TPPVPSGP 101
Score = 26.2 bits (57), Expect = 9.3
Identities = 14/115 (12%), Positives = 25/115 (21%), Gaps = 31/115 (26%)
Query: 343 PGPPRNVSVTEV-NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
+V+ + + W+ +S Y K G + N
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESS--SNYTYKIHVAGETDSSN------------ 53
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
+ I L +T Y V +G + V
Sbjct: 54 ----------------LNVSEPRAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQV 92
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 41.0 bits (96), Expect = 3e-04
Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 18/159 (11%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA-H 135
+C Q ++K+ +++ G + H GRY C +
Sbjct: 25 RCQ--GGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTA 82
Query: 136 GTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
G SS +E++V P + +P + G +V + C++Q +
Sbjct: 83 GRSESSDPLELVVTGAYIKPTLSAQPSPVVN--SGGNVTLQCDSQ----VAFDGFILCKE 136
Query: 193 DGVALPKNRVKIVGG------NITIEGLRRVDFGYYECV 225
P+ ++ + +Y C
Sbjct: 137 GEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCY 175
Score = 34.4 bits (79), Expect = 0.044
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 11/131 (8%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---EFPAKVTFTPTV-QYLPFRLQG 74
I + + +G Y C + + L + K T + +
Sbjct: 59 QFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNV 118
Query: 75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS----LLFTRVNQNHQGRYTCT 130
+QC + F K+ E Q + GS V+ + + Y C
Sbjct: 119 TLQCDSQVA--FDGFILCKEGED-EHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCY 175
Query: 131 PYNAHGTQGSS 141
Y+++ S
Sbjct: 176 AYDSNSPYEWS 186
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 38.4 bits (90), Expect = 3e-04
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
P AP N+ A T S+TL W + + Y + Y T T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTAS-TDNVGVT-GYDV-YNGTA-------LATTVTGTTA 53
Query: 305 TINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKT 338
TI+ L T+Y F V K+ G+ SN V VKT
Sbjct: 54 TISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 34.9 bits (81), Expect = 0.005
Identities = 25/119 (21%), Positives = 36/119 (30%), Gaps = 36/119 (30%)
Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
P P N++ T + +SW + + Y + Y T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVGVTGYDV--YNGTALATT-------------- 47
Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKT 459
T TI+ L T+Y F V K+ G+ SN V VKT
Sbjct: 48 ------------------VTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 40.1 bits (93), Expect = 5e-04
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 98 LEPYQTKDIVVMQNGSLLFTRVN-QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTI 156
LE ++ L V+ + + + C A T + G + R P +
Sbjct: 36 LETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQR-PDRVEL 94
Query: 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
P + VGE+ + C A T+T R
Sbjct: 95 MPLPP-WQPVGENFTLSCRVPGAGPRASLTLTLLR 128
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 40.1 bits (93), Expect = 7e-04
Identities = 25/212 (11%), Positives = 58/212 (27%), Gaps = 28/212 (13%)
Query: 242 EGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
+ P N+T + + + W + + + G K+ I
Sbjct: 8 GPSSVPTPTNVTIESYNMNPIVYWEY---QIMPQVPVFTVEVKNYGVKNSEWIDA----C 60
Query: 302 TQITINR--LTPAT-----TYEFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVS 350
I+ + ++ + +V K +G S + K GPP +
Sbjct: 61 INISHHYCNISDHVGDPSNSLWVRV--KARVGQKE-SAYAKSEEFAVCRDGKIGPP-KLD 116
Query: 351 VTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNK 410
+ + +I P + + + + + + N +Y+ K
Sbjct: 117 IRKEEKQIMIDIFHPSVFVNGDEQEV--DYDPETTCYIRVYNVYVRMNGSEIQYKILTQK 174
Query: 411 DWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
+ Q+ I + + Y G
Sbjct: 175 ED----DCDEIQCQLAIPVSSLNSQYCVSAEG 202
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 38.6 bits (89), Expect = 0.001
Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 27/147 (18%)
Query: 117 TRVNQNH-QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE 175
+ + H T + + + T+ G +V + C+
Sbjct: 10 AKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVV--------AGGTVVLKCQ 61
Query: 176 AQEAEGTQKPTITWQRRDG--------VALPKNRVKIVGG-----NITIEGLRRVDFGYY 222
+ + ++ W AL NR+++V +I+I + D G Y
Sbjct: 62 V---KDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEY 118
Query: 223 ECVVSNEVATIVQAAQLVVEGTQPHAP 249
C + + + V G P P
Sbjct: 119 TCSIFTM-PVRTAKSLVTVLGI-PQKP 143
Score = 34.8 bits (79), Expect = 0.018
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
++ I+ V D G Y C + + A++ + V
Sbjct: 104 SISISNVALADEGEYTCSIFT--MPVRTAKSLVTVLGI 139
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 38.2 bits (88), Expect = 0.001
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 19/96 (19%)
Query: 345 PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY 404
PP NV+V ++ W+ P + Y +Y+ D K
Sbjct: 20 PPSNVTVRCNTTHCLVRWKQPRTYQK-LSYLDFQYQLDVHRK------------------ 60
Query: 405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
Q + L I V+ + P + ++
Sbjct: 61 NTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVKI 96
Score = 32.4 bits (73), Expect = 0.089
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 249 PYNITGVATEFSVTLEWLPGYSGGPDLKQN--YVIWYREQGNKDW---LPIPVTPPGSTQ 303
P N+T + W + + Y + + + L I V+ +
Sbjct: 21 PSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENR 80
Query: 304 ITINRLTPATTYEFQV 319
P + ++
Sbjct: 81 YNFPSSEPRAKHSVKI 96
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 37.9 bits (88), Expect = 0.001
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 166 VGESVDMHC--EAQEAEGTQKPTITWQRRDGVALP----------------KNRVKIVGG 207
E+ D+ C + + + + WQ ++ + L R
Sbjct: 8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD 67
Query: 208 NIT--IEGLRRVDFGYYECVVSNE 229
+ T + L+ D G Y+C++ ++
Sbjct: 68 SWTLRLHNLQIKDKGLYQCIIHHK 91
Score = 30.2 bits (68), Expect = 0.50
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
TL ++ + D GLY C + +
Sbjct: 66 SDSWTLRLHNLQIKDKGLYQCIIHH 90
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 38.0 bits (87), Expect = 0.001
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
PG P V +++ +G +SW+PP + I Y + N Q+ Y G
Sbjct: 8 PGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMR-IYCG 66
Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
G T F++ KNE G G
Sbjct: 67 L---------KTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG 104
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 38.9 bits (90), Expect = 0.001
Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 5/133 (3%)
Query: 100 PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-KPPAFTIKP 158
P K++++ N ++ N + C G + + V + P
Sbjct: 36 PLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLP 95
Query: 159 EAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV-KIVGGNITIEGLRRV 217
VG+ + + C+ + + T+ R + + V + T+ R
Sbjct: 96 SWQP---VGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDH 152
Query: 218 DFGYYECVVSNEV 230
+ C ++
Sbjct: 153 HGAQFSCRTELDL 165
Score = 37.0 bits (85), Expect = 0.005
Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 9/135 (6%)
Query: 2 NTKVGSLETR-----VVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
K+ +ET +++ + V + MC + G+ A P
Sbjct: 27 QPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTP 86
Query: 57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQY--VTWTKDKRLLEPYQTKDIVVMQNGSL 114
+V P + P Q ++C ++ V + ++ L+ +
Sbjct: 87 ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPA--EVTT 144
Query: 115 LFTRVNQNHQGRYTC 129
+H +++C
Sbjct: 145 TVLVRRDHHGAQFSC 159
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 38.4 bits (89), Expect = 0.002
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 23/161 (14%)
Query: 77 QCHIKANPTFQYVTWTKDKRL---LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
QC ++ F++ ++ L V + + +R+ Q+ G Y C
Sbjct: 28 QCW--SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKA-NFSISRMTQDLAGTYRCYGSV 84
Query: 134 AHGTQGSSGQ---MEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187
H S +++++ + P+ + +P GE+V + C ++
Sbjct: 85 THSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTV--LAGENVTLSCSSRS----SYDMY 138
Query: 188 TWQRRDGVALPKNRVKIVGGNITIEGLRRV----DFGYYEC 224
R+G A + N T + + G Y C
Sbjct: 139 HL-SREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Score = 31.8 bits (72), Expect = 0.31
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 20/135 (14%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQA----YLNVEFPAKVTFTPTVQYLPFRLQG 74
I+ + D +G Y C S Q + + + + P++ P
Sbjct: 64 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYE---KPSLSAQP---GP 117
Query: 75 VV--------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR 126
V C +++ + +++ E V F H G
Sbjct: 118 TVLAGENVTLSCSSRSS--YDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGT 175
Query: 127 YTCTPYNAHGTQGSS 141
Y C S
Sbjct: 176 YRCFGSFHDSPYEWS 190
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 38.8 bits (90), Expect = 0.003
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQ- 77
T + D +CEV++ + + N+ +V T V P R + V
Sbjct: 181 TAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNV 240
Query: 78 -CHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGRYTC 129
C ++ P +TW ++ + + ++G+ LL + TC
Sbjct: 241 TCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTC 300
Score = 31.4 bits (71), Expect = 0.63
Identities = 21/173 (12%), Positives = 45/173 (26%), Gaps = 12/173 (6%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
D ++ I+ + D+G Y C + A + AK +
Sbjct: 73 DFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQ 132
Query: 75 ---VVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNG------SLLFTRVNQNHQ 124
C +P + W K+ L +QT V ++ + ++
Sbjct: 133 HTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVH 192
Query: 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
+ C + L + V++ C+ +
Sbjct: 193 SQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVR 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.003
Identities = 71/453 (15%), Positives = 125/453 (27%), Gaps = 189/453 (41%)
Query: 69 PFRL-QGVVQCHIKANPTFQYVTWT--KD---KRLLEPYQT--KDIVVMQNGSLL--F-- 116
P L G ++ + PT + + ++ K L EP + D L+ F
Sbjct: 8 PLTLSHGSLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 117 ---TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMH 173
+ V + G++ +VL F E Y G D+H
Sbjct: 67 YVSSLVEPSKVGQFD----------------QVLNLCLTEF----ENCYLE--GN--DIH 102
Query: 174 CEAQEAEGTQKPTITWQRRDGV--------------------AL----PKNRVKIV---- 205
A + T+ + ++ + AL + ++V
Sbjct: 103 ALAAKLLQENDTTLV-KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 206 G-GNIT--IEGLRRVDFGY--YECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFS 260
G GN E LR + Y Y +V I +A+ + E
Sbjct: 162 GQGNTDDYFEELRDL---YQTYHVLVG---DLIKFSAETLSE---------------LIR 200
Query: 261 VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG-----STQIT--INRLTPAT 313
TL+ ++ G ++ + WL P P S I+ + +
Sbjct: 201 TTLDAEKVFTQGLNILE-------------WLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 314 TYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNV--SVTEVNNGFVISWQPPLERASL 371
Y +V K G PG R+ T + G +++ A
Sbjct: 248 HY-----------------VVTAKLLGFTPGELRSYLKGATGHSQG-LVT-------AVA 282
Query: 372 IQYYLIKYRTDGSWKTLNKGQIRPEENS--------YLGEYREQGNKDWLPIPVTPPGST 423
I SW++ + ++G R + P PP
Sbjct: 283 IA-------ETDSWESF-------FVSVRKAITVLFFIG-VRCY---EAYPNTSLPPSIL 324
Query: 424 QITINRLTPATTYEFQVVGKNELGDG----MLS 452
+ ++ E +G MLS
Sbjct: 325 EDSL-----------------ENNEGVPSPMLS 340
Score = 33.1 bits (75), Expect = 0.23
Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 58/161 (36%)
Query: 250 YNITGVATEFSVTLEWLPGYSGGPDLKQNY-VIWYREQGNKDWLPIPVTPPGSTQITINR 308
++I + V L G G +++NY + + + + IN
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK------EINE 1712
Query: 309 LTPATTYEFQVVGKNELGD-GMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLE 367
+ + T+ + G+LS T T QP L
Sbjct: 1713 HSTSYTFR---------SEKGLLS-----AT-----------QFT----------QPALT 1737
Query: 368 RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY----LGEY 404
+ +K +KG + P + ++ LGEY
Sbjct: 1738 LMEKAAFEDLK----------SKG-LIPADATFAGHSLGEY 1767
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.007
Identities = 52/327 (15%), Positives = 93/327 (28%), Gaps = 106/327 (32%)
Query: 140 SSGQMEVLVRKPPA-------FTI---KPEAMYQRKVGESVD---------MHCEAQEAE 180
S +++ ++ A F K E M Q+ V E + + E ++
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 181 GTQKPTITWQRR---DGVALPK---NRVKIV------------GGNITIEGLRRVDFGYY 222
+ I + R D K +R++ N+ I+G+ G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSG 162
Query: 223 ECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLP-GYSGGPD--LKQNY 279
+ V+ +V + Q + I F WL P+ L+
Sbjct: 163 KTWVALDV---CLS-----YKVQCKMDFKI------F-----WLNLKNCNSPETVLEMLQ 203
Query: 280 VIWYREQGNKDWLP-IPVTPP---GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335
+ Y+ N S Q + RL + Y +N L +V+
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------ENCL-------LVL 250
Query: 336 VKTKGPKPGPPRNVSVTEVNNGF-------VISWQPPLER-ASLIQYYLIKYRTDGSWKT 387
NV + N F + + R + + T S
Sbjct: 251 -----------LNVQNAKAWNAFNLSCKILLTT------RFKQVTDFLSAATTTHISLDH 293
Query: 388 LNKGQIRPEENSYLGEYREQGNKDWLP 414
+ E S L +Y + +D LP
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQD-LP 319
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 35.3 bits (81), Expect = 0.009
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ K + + +D TL ++ + +D G Y CE + +L V
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 37.3 bits (85), Expect = 0.010
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
+W + + + + N L + G Y C
Sbjct: 531 YSWRHKENVEQSCE--PGHQSPNCILFIENLTAQQYGHYFCE 570
Score = 36.1 bits (82), Expect = 0.025
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 6/126 (4%)
Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA 179
+ + Q + P P + C +
Sbjct: 468 GWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPME-- 525
Query: 180 EGTQKPTITWQRRDGVALPKNRVKIVG-GNITIEGLRRVDFGYYECV-VSNEVATIVQAA 237
++ T +W+ ++ V + IE L +G+Y C Q
Sbjct: 526 --SRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHW 583
Query: 238 QLVVEG 243
QL+ E
Sbjct: 584 QLLPED 589
Score = 29.2 bits (64), Expect = 3.7
Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCE-VSNGIGEPQA 46
+ L I + + G Y CE
Sbjct: 545 PGHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQ 581
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 34.9 bits (80), Expect = 0.011
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
D +L IN + DD Y CEV+ + +E
Sbjct: 77 DVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIE 114
Score = 31.8 bits (72), Expect = 0.13
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 22/86 (25%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-----------------KNRVKIVG-- 206
V + C G ++ + W R G + R+K+
Sbjct: 15 WKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKV 74
Query: 207 -GN--ITIEGLRRVDFGYYECVVSNE 229
G+ + I L+ D +Y C V+ +
Sbjct: 75 PGDVSLQINTLQMDDRNHYTCEVTWQ 100
Score = 27.6 bits (61), Expect = 4.4
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 24/100 (24%)
Query: 75 VVQCHI--KANPTFQYVTWTKDK-----RLLEPYQTKDIVVMQ--------------NGS 113
+QC V W + T D + + S
Sbjct: 20 KIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVS 79
Query: 114 LLFTRVNQNHQGRYTC--TPYNAHGTQGS-SGQMEVLVRK 150
L + + + YTC T G Q +E+ VRK
Sbjct: 80 LQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRK 119
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 34.7 bits (80), Expect = 0.013
Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNAH 135
C + + ++ + K + VN+ G Y+C
Sbjct: 29 VCS--YSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGI 86
Query: 136 GTQGSSGQMEVLVRKPP 152
S +E+ V K
Sbjct: 87 TWSERSKTLELKVIKEN 103
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 34.9 bits (80), Expect = 0.014
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
+ G L I+ V +D+ Y+ V G Q + L V
Sbjct: 71 QSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
Score = 32.2 bits (73), Expect = 0.11
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 77 QCHIKANPTFQYVTWTK--DKRLLE-----------PYQTKDIVVMQNGSLLFTRVNQNH 123
++ +TW D++++E ++ + + Q+G+L ++V +
Sbjct: 25 NISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKED 84
Query: 124 QGRYTCTPYNAHG-TQGSSGQMEVLVRKPPAFTIK 157
Y G Q +++VL P IK
Sbjct: 85 NSTYIMRVLKKTGNEQEWKIKLQVLDP-VPKPVIK 118
Score = 29.1 bits (65), Expect = 1.1
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 14/78 (17%)
Query: 166 VGESVDMHCEAQEAE---------GTQKPTITWQRRDGVALP---KNRVKIV--GGNITI 211
G +V ++ E + + W R K RV++ G + I
Sbjct: 18 SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 212 EGLRRVDFGYYECVVSNE 229
+++ D Y V +
Sbjct: 78 SKVQKEDNSTYIMRVLKK 95
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 36.6 bits (84), Expect = 0.015
Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 17/178 (9%)
Query: 89 VTWTKDKRLLEPYQTKDIVVMQNG------SLLFTRVNQNHQGRYTCTP-YNAHGTQGSS 141
+TW +D ++++ + + L ++ + YTC Y H + S+
Sbjct: 43 ITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDST 102
Query: 142 GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE-AEGTQKPTITWQRRDGVALPKN 200
+ + + + + + + +S + C + A +TW R G + +
Sbjct: 103 KKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS 162
Query: 201 RVKI---------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
K V + + ++ Y+C V++ AP
Sbjct: 163 TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAP 220
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 33.6 bits (76), Expect = 0.021
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 241 VEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
+ + P + + S ++W Y++ +R + N T PG
Sbjct: 3 LGSSGPVEVFITETPSQPNSHPIQWNAPQPSHIS---KYILRWRPK-NSVGRWKEATIPG 58
Query: 301 -STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
TI L P YE Q++ + G ++ T
Sbjct: 59 HLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTT 97
Score = 31.7 bits (71), Expect = 0.13
Identities = 26/122 (21%), Positives = 38/122 (31%), Gaps = 30/122 (24%)
Query: 341 PKPGPPRNVSVTEVN---NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEE 397
P V +TE N I W P + S I Y++++R S + I
Sbjct: 3 LGSSGPVEVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGRWKEATIPGHL 60
Query: 398 NSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
NSY TI L P YE Q++ + G ++
Sbjct: 61 NSY-------------------------TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFT 95
Query: 458 KT 459
T
Sbjct: 96 TT 97
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 35.1 bits (80), Expect = 0.024
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 2/96 (2%)
Query: 98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK 157
LE K ++ Q + N +H C + + + + V + P +
Sbjct: 36 LETSLNKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVY-QPPRQVILT 94
Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
+ VG+S + C E T+ R +
Sbjct: 95 LQPTLVA-VGKSFTIECRVPTVEPLDSLTLFLFRGN 129
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 33.7 bits (77), Expect = 0.033
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
++ +L + + +D G Y C ++ +L V
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 26.7 bits (59), Expect = 7.2
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 26/106 (24%)
Query: 166 VGESVDMHCEAQ--EAEGTQKPTITWQRRDG-------------VALPKNRVKIVG---- 206
+G+SV + C Q E T +TW R R++ V
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 207 -----GNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEGTQP 246
++ + GLR D G Y C+ L V +P
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA-KP 118
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 33.7 bits (77), Expect = 0.041
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA 46
+ + D ++ + + D G Y C+V G
Sbjct: 78 HFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK 117
Score = 33.3 bits (76), Expect = 0.042
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 30/119 (25%)
Query: 153 AFTIK-PEAMYQRKVGESVDMHCEAQ-EAEGTQKPTITWQRRDGVALP------------ 198
+ +I PE M ++ GE+ + C+ E I W
Sbjct: 5 SLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDK 64
Query: 199 ---------KNRVKIVGGN-------ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
K RV + I + L+ D G Y+C V + LVV
Sbjct: 65 IYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 30.2 bits (68), Expect = 0.48
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
+ S+ T + + G Y C A G + VLV+
Sbjct: 88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 33.3 bits (75), Expect = 0.049
Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 33/105 (31%)
Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------------- 198
+ G +V++ C Q A TQ P I+W +
Sbjct: 10 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 69
Query: 199 -----------KNRVKIVGGN---ITIEGLRRVDFGYYECVVSNE 229
R + + + + D G Y C V+
Sbjct: 70 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQW 114
Score = 32.5 bits (73), Expect = 0.10
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
V TL + V D G Y C+V+ + +V
Sbjct: 84 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 130
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 32.4 bits (73), Expect = 0.075
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 2 NTKVGSLETRVVIKKDGTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
G + + + + L + + SG Y+C E YL
Sbjct: 43 KNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 95
>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T*
1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T*
1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T*
1w0y_T* ...
Length = 218
Score = 33.6 bits (76), Expect = 0.079
Identities = 34/213 (15%), Positives = 59/213 (27%), Gaps = 44/213 (20%)
Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN 307
A YN+T +T F LEW P Q Y + + DW T
Sbjct: 8 AAYNLTWKSTNFKTILEWEPKPVN-----QVYTVQIST-KSGDWKSK------CFYTTDT 55
Query: 308 R--LTPATT------YEFQV---VGKNELGDGMLSNIVVVKTKGPKP------GPPRNVS 350
LT Y +V N G + + P G P S
Sbjct: 56 ECDLTDEIVKDVKQTYLARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNLGQPTIQS 115
Query: 351 VTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNK 410
+V ++ + R + ++ +L + ++ Y Y + ++
Sbjct: 116 FEQVGTKVNVTVEDERT----------LVRRNNTFLSLR--DVFGKDLIYTLYYWKSSSQ 163
Query: 411 DWLPIPVTP---PGSTQITINRLTPATTYEFQV 440
+ +T + + Y F V
Sbjct: 164 EKGEFRSGKKTAKTNTNEFLIDVDKGENYCFSV 196
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 32.0 bits (73), Expect = 0.090
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNAH 135
C + + ++ + K + VN+ G Y+C
Sbjct: 29 VCS--YSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGI 86
Query: 136 GTQGSSGQMEVLV 148
S +E+ V
Sbjct: 87 TWSERSKTLELKV 99
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 32.2 bits (73), Expect = 0.10
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-KPP 152
+GS++ ++ + G +TC N G + Q+ + V K P
Sbjct: 80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
Score = 31.9 bits (72), Expect = 0.16
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN 39
KDG++VI+ + D+G + C+V N
Sbjct: 78 WKDGSIVIHNLDYSDNGTFTCDVKN 102
Score = 31.5 bits (71), Expect = 0.21
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 27/113 (23%)
Query: 156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALP---------------- 198
+ + VG V +HC +E TW+ +
Sbjct: 3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDE 62
Query: 199 ----KNRVKIVG------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
K R++ VG G+I I L D G + C V N + + +Q+ +
Sbjct: 63 VGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune
system; 1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 31.7 bits (72), Expect = 0.12
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNG 40
+ +G L I+ V +D G Y V
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRVLRE 95
Score = 30.2 bits (68), Expect = 0.45
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 77 QCHIKANPTFQYVTW--TKDKRLLEPYQTKDIVVM------------QNGSLLFTRVNQN 122
+ H ++ +TW TK++++LE + NG+L + V +
Sbjct: 24 KIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKE 83
Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKP 151
+G Y + ++ + V P
Sbjct: 84 DKGTYYMRVLR---ETENELKITLEVFDP 109
Score = 29.4 bits (66), Expect = 0.86
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 15/80 (18%)
Query: 165 KVGESVDMHCEAQEAE---------GTQKPTITWQRRDGVALP----KNRVKI--VGGNI 209
G +V + + + + + K RV + G +
Sbjct: 16 YTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGAL 75
Query: 210 TIEGLRRVDFGYYECVVSNE 229
I +R+ D G Y V E
Sbjct: 76 HISNVRKEDKGTYYMRVLRE 95
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 33.8 bits (77), Expect = 0.12
Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 8/134 (5%)
Query: 329 MLSNIVVVKTKGPKPGPPRNVSVTEV---NNGFVISWQPPLERASLIQYYLIKYRTDGSW 385
M+ + + K P+ + V + + V+ W+ P + ++ Y +
Sbjct: 21 MVGTPMAMAAKSSSLDAPQQLQVPTLAYDESSIVLVWKAPEDTRKIVDYQIFSAGKLLGK 80
Query: 386 KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 445
+ N P + Y + I + T+ L P T+Y+F V +
Sbjct: 81 ASDNNDNFSPAKPYIDHFYVNDKDNFQHKIVMQ-----NFTVIGLKPETSYQFTVKAQYA 135
Query: 446 LGDGMLSNIVVVKT 459
G +++ +
Sbjct: 136 DGSLSVASKPITAK 149
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 32.6 bits (74), Expect = 0.17
Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 21/165 (12%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAY--LNVEFPAKVTFTPTVQYLPFRL 72
+ ++ + +DS +Y C S G+ Q L V + P V
Sbjct: 72 DYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSK 131
Query: 73 QGVVQ-------CHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT-----RV 119
+ C + P ++W + + + + D + + ++ RV
Sbjct: 132 AEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRV 191
Query: 120 N----QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160
+ N + + C + KP I EA
Sbjct: 192 SATFWHNPRNHFRCQV--QFHGLSEEDKWPEGSPKPVTQNISAEA 234
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Length = 547
Score = 32.6 bits (75), Expect = 0.27
Identities = 10/65 (15%), Positives = 25/65 (38%)
Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237
E +P ++ + G +I++E + R + + +EV V +
Sbjct: 4 VNESGSQPVVSRDETLSQIERTSFHISSGKDISLEEIARAARDHQPVTLHDEVVNRVTRS 63
Query: 238 QLVVE 242
+ ++E
Sbjct: 64 RSILE 68
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 30.3 bits (68), Expect = 0.41
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN-GIGEPQAAQAYLNVEFPAKVT 60
+ D +L I DSGLY C V G Q L V+ P V
Sbjct: 70 EGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVK-PELVP 115
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 31.9 bits (71), Expect = 0.45
Identities = 21/131 (16%), Positives = 34/131 (25%), Gaps = 19/131 (14%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP--TVQYLPFRLQG 74
+GT + V G Y+ + + Q L V P KV+ P + P
Sbjct: 253 NGTFWLPRVQPFQEGTYLATIHLPYLQGQVT-LELAVYKPPKVSLMPATLARAAPGEAPP 311
Query: 75 VVQCHIKAN--PTFQYVTWTKDKRLLEPYQTKDIVV-----MQNGSLLFT---------R 118
+ C + V W Q + + +
Sbjct: 312 ELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPV 371
Query: 119 VNQNHQGRYTC 129
+ H RY C
Sbjct: 372 TTEQHGARYAC 382
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 30.3 bits (68), Expect = 0.46
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 108 VMQNGSLLFTRVNQNHQGRYTC-TPYNAHGTQGSSGQMEV 146
+ N SLL + QN G YT + + ++GQ V
Sbjct: 68 IYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
Score = 29.9 bits (67), Expect = 0.49
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
R +I + +L+I + +D+G Y V + A V
Sbjct: 65 REIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 29.9 bits (67), Expect = 0.49
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN-GIGEPQAAQAYLNVE 54
K D +L+I V DD G Y C + G+ + + L+++
Sbjct: 69 KGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
Score = 28.7 bits (64), Expect = 1.5
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 23/91 (25%)
Query: 162 YQRKVGESVDMHCEAQEAEGTQKPTITWQR-----------------RDGVALPKNRVKI 204
Y+ +VG++ + C + W + R+ +R ++
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63
Query: 205 VG----GN--ITIEGLRRVDFGYYECVVSNE 229
G G+ + I+ + D G Y C +
Sbjct: 64 KGDLNKGDVSLIIKNVTLDDHGTYCCRIQFP 94
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 29.9 bits (67), Expect = 0.56
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSN-GIGEPQAAQAYLNVEFPAKVT 60
+ +L I+ DSG+Y C + G L + A V
Sbjct: 70 FGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELR-RALVP 115
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 31.1 bits (70), Expect = 0.63
Identities = 22/167 (13%), Positives = 45/167 (26%), Gaps = 23/167 (13%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAY----LNVEFPAKVTFTPTVQYLPF 70
++ +L++ + +Y C G G L V + P V
Sbjct: 69 QEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEP 128
Query: 71 RLQGVVQ-------CHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT----- 117
+ C + P ++W + + + + D + + +
Sbjct: 129 SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRL 188
Query: 118 RVN----QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160
RV+ N + + C + KP I EA
Sbjct: 189 RVSATFWHNPRNHFRCQV--QFHGLSEEDKWPEGSPKPVTQNISAEA 233
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 29.9 bits (67), Expect = 0.65
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNG 40
+R + L I V D+ +Y+C V
Sbjct: 73 SRFLHDHQAELHIRDVRGHDASIYVCRVEVL 103
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 31.4 bits (71), Expect = 0.70
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 20 LVINPVGSDDSGLYMCEVSN----GIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV 75
L + + Y C+VSN E ++A P T P+ L Q
Sbjct: 316 LTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKN-QVS 374
Query: 76 VQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS 113
+ C +K P+ V W + + Y+T V+ +GS
Sbjct: 375 LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS 413
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 29.4 bits (66), Expect = 0.94
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNG 40
K L++ + +DSG Y
Sbjct: 76 HKVCNLLLKDLKPEDSGTYNFRFEIS 101
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 30.8 bits (68), Expect = 0.97
Identities = 25/139 (17%), Positives = 34/139 (24%), Gaps = 10/139 (7%)
Query: 169 SVDMHC-----EAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYE 223
VD C A P+ T R R +V ++ I G+R D G Y
Sbjct: 63 VVDAACMRAPVPLAMAYAPPAPSATGGLRTDFVWQ-ERAAVVNRSLVIHGVRETDSGLYT 121
Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDL-KQNYVIW 282
V + Q A +V+ P T T +
Sbjct: 122 LSVGDIKDPARQVASVVLVVQPAPVP---TPPPTPADYDEDDNDEGEDESLAGTPASGTP 178
Query: 283 YREQGNKDWLPIPVTPPGS 301
P P S
Sbjct: 179 RLPPPPAPPRSWPSAPEVS 197
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 29.2 bits (65), Expect = 1.1
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 2 NTKVGSLETRVVIKKDGT---LVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
+V R I++ G L+++ V DSG + G+ A L ++
Sbjct: 53 EGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV----QDSAALTIQES 106
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 29.1 bits (65), Expect = 1.2
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 22/84 (26%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------------KNRVKIV-- 205
+GESV QE + I W + VA R+ +
Sbjct: 13 LGESVTFPVNIQEPRQVKI--IAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGP 70
Query: 206 GGNITIEGLRRVDFGYYECVVSNE 229
N+ I LR D G Y+ ++ +
Sbjct: 71 NYNLVISDLRMEDAGDYKADINTQ 94
Score = 26.4 bits (58), Expect = 8.8
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAY-LNV 53
+ + LVI+ + +D+G Y +++ + Y L +
Sbjct: 67 ALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 30.0 bits (67), Expect = 1.3
Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 18/143 (12%)
Query: 3 TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT 62
+ + D +L + + +++G Y CEV P AQ + +E A
Sbjct: 67 RPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVT---PLKAQGTVQLEVVASPASR 123
Query: 63 PTVQYLPFRLQGV-VQCHIKA-NPTFQYVTWTKDKRLL-------------EPYQTKDIV 107
+ + + C P +TW K + + D
Sbjct: 124 LLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGT 183
Query: 108 VMQNGSLLFTRVNQNHQGRYTCT 130
L ++ Y C
Sbjct: 184 FNVTSCLKLNSSQEDPGTVYQCV 206
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 28.5 bits (63), Expect = 1.4
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 89 VTWTKDKRLL------EPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
V W + L+ ++ ++ NG L + ++ G Y T Y+ +GT
Sbjct: 30 VRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT 84
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 29.5 bits (66), Expect = 1.6
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
+ L I +DS Y+C + G L V P P V L
Sbjct: 69 EGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVI-PNIQNPDPAVYQLR 122
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 28.8 bits (64), Expect = 1.6
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNG 40
K+ TL I D+G Y + G
Sbjct: 85 TKNCTLSIRDARMSDAGRYFFRMEKG 110
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 28.3 bits (63), Expect = 2.2
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 21/103 (20%)
Query: 166 VGESVDMHCEAQEAEGTQKPTITWQR--------------RDGVALPKNRVKIVGGN--- 208
G SV + C + W R + R +
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 209 ---ITIEGLRRVDFGYYECVVSNEVATIVQAAQL-VVEGTQPH 247
+ I L + D G Y+C + + L V+E H
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEHHHHH 116
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 28.1 bits (63), Expect = 2.3
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 77 QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS----LLFTRVNQNHQGRYTCTPY 132
C Q ++ R T+D+ V++ + G Y C Y
Sbjct: 29 VCR--GPVGVQTFRLERESRS-TYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIYY 85
Query: 133 NAHGTQGSSGQMEVLV 148
S +E+LV
Sbjct: 86 KPPKWSEQSDYLELLV 101
>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons, IFNA2,
ifnar2, SUB-complex of the interferon signaling complex;
2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A 2ksx_B
2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*
Length = 199
Score = 28.9 bits (64), Expect = 2.6
Identities = 28/205 (13%), Positives = 46/205 (22%), Gaps = 43/205 (20%)
Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK-DWLPIPVTPPGSTQITI 306
F L W +Y + Y D + T
Sbjct: 4 ESCTFKISLRNFRSILSWELKNHSIVPT--HYTLLYTIMSKPEDLKVV----KNCANTTR 57
Query: 307 NR--LTPAT-----TYEFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVSVTEVN 355
+ LT Y + G G + PP +
Sbjct: 58 SFCDLTDEWRSTHEAYVTVLEGF----SGNTTLFSCSHNFWLAIDMSFEPPE-FEIVGFT 112
Query: 356 NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
N + + P +Q+ L + S + K + + N
Sbjct: 113 NHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKKHKPEIKGNM---------------- 156
Query: 416 PVTPPGSTQITINRLTPATTYEFQV 440
G+ I++L P T Y V
Sbjct: 157 ----SGNFTYIIDKLIPNTNYCVSV 177
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 29.5 bits (66), Expect = 2.9
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP------FRL 72
L I + + C V++ P + ++ P V +P +
Sbjct: 296 ALPIMHQDWLNGKEFKCRVNSA-AFPAPIEKTISK--TKGKPRAPQVYTIPPPKEQMAKD 352
Query: 73 QGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS 113
+ + C I P V W D + E Y+ ++ +GS
Sbjct: 353 KVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGS 394
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 28.8 bits (64), Expect = 3.2
Identities = 30/170 (17%), Positives = 48/170 (28%), Gaps = 26/170 (15%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGI---------GEPQAAQAYLNVEFPAKVT-FTPT 64
TL I P +DS +Y C S G L FP +V F P+
Sbjct: 73 GSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPS 132
Query: 65 VQYLPFRLQGVVQCHIKA-NPTFQYVTWTKD------------KRLLEPYQTKDIVVMQN 111
+ + + C P ++W + + L E D +
Sbjct: 133 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALS 192
Query: 112 GSLLFTRVN-QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160
L + QN + + C + + KP + EA
Sbjct: 193 SRLRVSATFWQNPRNHFRCQV--QFYGLSENDEWTQDRAKPVTQIVSAEA 240
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 28.7 bits (63), Expect = 3.3
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 256 ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 315
AT S+ + W Y G Y I Y E G + P S+ TI+ L P Y
Sbjct: 115 ATPTSLLISWDASYYG----VSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDY 170
Query: 316 EFQVVGKNELGDGMLSNIVVVKTK 339
V ++ + + + +
Sbjct: 171 TITVYAYSDYYGSHHYSPISINYR 194
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 28.7 bits (64), Expect = 3.4
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 10/123 (8%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSN-GIGEPQAAQAYLNVEFPA--KVTFTPTVQYLPFRLQ 73
L I + + C+V++ P P +V + + Q
Sbjct: 81 VSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQ 140
Query: 74 GVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGR 126
+ C +K P Y W + + E Y+ + +GS L +
Sbjct: 141 VSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNT 200
Query: 127 YTC 129
+TC
Sbjct: 201 FTC 203
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.1 bits (62), Expect = 4.3
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
L +N ++ G Y C V + + + V T T V P
Sbjct: 91 VLTLNKFSKENEGYYFCSVIS--NSVMYFSSVVPVLQKVNSTTTKPVLRTP 139
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 27.2 bits (60), Expect = 4.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEV 37
+ + +L I D G Y C V
Sbjct: 71 EGNVSLTIENTVVGDGGPYCCVV 93
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 28.4 bits (63), Expect = 4.6
Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 18/138 (13%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAY----------LNVEFPAKVTFTPT 64
++ TL I +DSG Y C + VE ++ P+
Sbjct: 68 RRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPS 127
Query: 65 VQYLPFRLQGVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS-LLFTRVNQN 122
V + V C +K P ++ K+++E IV+ +G
Sbjct: 128 VF--IMKNGTNVACLVKDFYPKEVTISLRSSKKIVE--FDPAIVISPSGKYSAVKLGQYG 183
Query: 123 HQGRYTCTPYNAHGTQGS 140
TC+ H ++
Sbjct: 184 DSNSVTCS--VQHNSETV 199
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 28.1 bits (62), Expect = 5.3
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 15 KKDGTLVINPVGSDDSGLYMCEVSNGIG----------EPQAAQAYLNVEFPAKVTFTPT 64
+L I + DS LY+C S + NV P F P+
Sbjct: 98 NSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPS 157
Query: 65 VQYLPFRLQGVVQCHIKA-NPTFQYVTWTKD 94
+ + + C P ++W +
Sbjct: 158 EAEISHTQKATLVCLATGFYPDHVELSWWVN 188
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 27.5 bits (61), Expect = 5.3
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 209 ITIEGLRRVDFGYYECVV---SNEVATIVQAAQLVV 241
+ + L+ D G Y+CV+ E + +LVV
Sbjct: 83 VRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 118
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 26.9 bits (59), Expect = 6.9
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 22/101 (21%)
Query: 163 QRKVGESVDMHCEA-------------QEAEGTQKPTITWQRRDGVALPKNRVKIVGGN- 208
Q G+++ + C+ +EA + + +R I
Sbjct: 21 QSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPD 80
Query: 209 -----ITIEGLRRVDFGYYECVV---SNEVATIVQAAQLVV 241
+T+ LR D G+Y C + S+ + LVV
Sbjct: 81 AGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV 121
Score = 26.5 bits (58), Expect = 10.0
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 11 RVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
R I D T+ + + +DSG Y C + + +
Sbjct: 72 RFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 27.7 bits (62), Expect = 7.4
Identities = 28/140 (20%), Positives = 41/140 (29%), Gaps = 42/140 (30%)
Query: 17 DGTLVINPVGSDDSGLYMCEVSNG------------IGEPQAAQAYLNVEFPAKVTFTPT 64
D TL I+ V ++D G+Y C ++ + AA PT
Sbjct: 108 DFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAA---------------PT 152
Query: 65 VQYLP------FRLQGVVQCHIKA-NPTFQYVTWTKDKRLLEP--------YQTKDIVVM 109
V P V C + P V W D + +KD
Sbjct: 153 VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYS 212
Query: 110 QNGSLLFTRVNQNHQGRYTC 129
+ +L T+ YTC
Sbjct: 213 MSSTLTLTKDEYERHNSYTC 232
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247;
2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A*
2ohy_A* 3kdz_A* 3kdy_A*
Length = 526
Score = 28.0 bits (63), Expect = 7.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 202 VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
V + G +T+E +RRV V E Q ++ + E
Sbjct: 2 VSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFE 42
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 27.6 bits (61), Expect = 8.8
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP------FRL 72
L I + C+V+N A + P P V LP +
Sbjct: 306 ALPIQHQDWMSGKEFKCKVNNK---DLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKK 362
Query: 73 QGVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS 113
Q + C + P YV WT + + Y+ + V+ +GS
Sbjct: 363 QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGS 404
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 26.4 bits (58), Expect = 9.6
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 208 NITIEGLRRVDFGYYECVV-SNEVATIVQAAQLVV 241
+ + L+ D G Y C+V I+ L +
Sbjct: 69 QVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.406
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,136,952
Number of extensions: 435492
Number of successful extensions: 3350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1883
Number of HSP's successfully gapped: 967
Length of query: 460
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 363
Effective length of database: 3,993,456
Effective search space: 1449624528
Effective search space used: 1449624528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (26.6 bits)