BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5350
(377 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|425626950|gb|AFX89033.1| loquacious [Mayetiola destructor]
Length = 353
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 200/312 (64%), Gaps = 18/312 (5%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P Y+L+QIEGAI+EP F+YR++ ++ A+G+GKSKKEAK
Sbjct: 49 KTPVSVLQELLSRRGITPTYDLVQIEGAIHEPTFRYRVTYGNKD----AMGAGKSKKEAK 104
Query: 136 HNAAKSVLDQLIGRD--DEKL-----MCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
H AA++++D+L G D+ L KEN KV NP+G LQE CM R+WPPP YET
Sbjct: 105 HQAARNLIDKLTGIQIADQILPPATPNGNKENDSKVNGNPIGWLQELCMARRWPPPFYET 164
Query: 189 EETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGED 248
+ GLPHER FT+ +V++Y E G GKSKK AKR AA M + L+ +P++ + +D
Sbjct: 165 QSEVGLPHERQFTIACHVSIYCETGRGKSKKEAKRLAAHQMWQRLQDLPLD-GQDDANDD 223
Query: 249 VDEKGESN---GLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVE 305
++ N LK ST LT Q K+ Q+H + G +L KL +T L D
Sbjct: 224 INRANNMNRYADLKEKRIST-LTNQHSYKVSQFHKTLKANS-GQILSKLQNT-CLNDPDV 280
Query: 306 DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAV 365
+ + +L++++ E ++ V++VDIEEKS + FQ L+QL+T PV V G+G + ++A+ A
Sbjct: 281 NFVQFLQEIATEQQFEVTYVDIEEKSYSGQFQCLVQLSTLPVAVCQGSGKTSKIAQTCAA 340
Query: 366 YRALDFLQIMNR 377
AL++L+IM +
Sbjct: 341 RNALEYLKIMTK 352
>gi|328784437|ref|XP_624606.3| PREDICTED: RISC-loading complex subunit tarbp2-like [Apis
mellifera]
Length = 383
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 200/338 (59%), Gaps = 28/338 (8%)
Query: 59 PLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSE 118
P+ EAA+LE+ L+ ++TPVS++QELLSRRGT PKYELIQ+EGAI+EPIF+YR+++
Sbjct: 54 PISEAAQLEMKSLS--NKTPVSILQELLSRRGTTPKYELIQVEGAIHEPIFRYRVTVAD- 110
Query: 119 SRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEK-------LMCQKENLF--------K 163
VA+G+GKSKKEAKH AA++VLD+L + E + ENL K
Sbjct: 111 ---VVAMGTGKSKKEAKHAAARAVLDKLCRLNSESPDSPLPNSIPDSENLQELSGYGEEK 167
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
+ NP+G LQE CM+R WPPP Y E GLPHER FT+ V Y+E G GKSKK+AKR
Sbjct: 168 IITNPIGALQEMCMSRHWPPPKYTIENEEGLPHERQFTIVCSVLKYREVGQGKSKKVAKR 227
Query: 224 EAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG----LKHTHDSTFLTPQILKKIQQYH 279
AA M + L + E P + E + + LK + ST T L K+ Q+H
Sbjct: 228 HAAHKMWQALHYMTTENPNIDEDEVLQRNANVSARYADLKGSKISTLTTIHSL-KVSQFH 286
Query: 280 TVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
T L E L L D + + +L++++ E ++ V++VDIEEKS + Q L
Sbjct: 287 KSLKSSTGVKLFE--LQNTCLNDGDVNLVQFLQEIASEQQFEVTYVDIEEKSISGKCQCL 344
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
+QL+T PV V G G + + A+ A AL++L+IM +
Sbjct: 345 VQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 382
>gi|380016563|ref|XP_003692250.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Apis florea]
Length = 383
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 200/338 (59%), Gaps = 28/338 (8%)
Query: 59 PLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSE 118
P+ EAA+LE+ L+ ++TPVS++QELLSRRGT PKYELIQ+EGAI+EPIF+YR+++
Sbjct: 54 PISEAAQLEMKSLS--NKTPVSILQELLSRRGTTPKYELIQVEGAIHEPIFRYRVTVAD- 110
Query: 119 SRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEK-------LMCQKENLF--------K 163
VA+G+GKSKKEAKH AA++VLD+L + E + ENL K
Sbjct: 111 ---VVAMGTGKSKKEAKHAAARAVLDKLCRLNSESPDSPLPNSIPDSENLQELSGYGEEK 167
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
+ NP+G LQE CM+R WPPP Y E GLPHER FT+ V Y+E G GKSKK+AKR
Sbjct: 168 IITNPIGALQEMCMSRHWPPPKYTIENEEGLPHERQFTIVCSVLKYREVGQGKSKKVAKR 227
Query: 224 EAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG----LKHTHDSTFLTPQILKKIQQYH 279
AA M + L + E P + E + + LK + ST T L K+ Q+H
Sbjct: 228 HAAHKMWQALHYMTTENPNIDEDEVLQRNANVSARYADLKGSKISTLTTIHSL-KVSQFH 286
Query: 280 TVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
T L E L L D + + +L++++ E ++ V++VDIEEKS + Q L
Sbjct: 287 KSLKSSTGVKLFE--LQNTCLNDGDVNLVQFLQEIASEQQFEVTYVDIEEKSISGKCQCL 344
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
+QL+T PV V G G + + A+ A AL++L+IM +
Sbjct: 345 VQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 382
>gi|383849930|ref|XP_003700586.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Megachile
rotundata]
Length = 377
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/339 (42%), Positives = 200/339 (58%), Gaps = 28/339 (8%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LP+ EAA+LE+ L ++TPVS++QELLSRRGT PKYELIQ+EGAI+EPIF+YR+++
Sbjct: 47 LPISEAAQLEMKSLT--NKTPVSILQELLSRRGTTPKYELIQVEGAIHEPIFRYRVTVAD 104
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD----DEKL---MCQKENLFKVE----- 165
VA+G+GKSKKEAKH AA++VLD+L + D L + ENL ++
Sbjct: 105 ----IVAMGTGKSKKEAKHAAARAVLDKLCRLNSDTPDSPLQNNIPDSENLQELSGYGEE 160
Query: 166 ---PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
NP+G LQE CM+R WPPP Y E GLPHER FT+ + Y+E G GKSKK+AK
Sbjct: 161 TLITNPIGALQEMCMSRHWPPPKYTMENEEGLPHERQFTIVCSILKYREVGQGKSKKVAK 220
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG----LKHTHDSTFLTPQILKKIQQY 278
R AA M + L + E + E + N LK + ST T L K+ Q+
Sbjct: 221 RHAAHKMWQALHDMNTESSNVDEDEVLQRNANVNARYAELKGSKISTLTTIHSL-KVSQF 279
Query: 279 HTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQS 338
H T L E L L D + + +L++++ E ++ V++VDIEEKS + Q
Sbjct: 280 HKSLKSSTGVKLFE--LQNTCLNDGDVNLVQFLQEIASEQQFEVTYVDIEEKSISGKCQC 337
Query: 339 LLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+QL+T PV V G G + + A+ A AL++L+IM +
Sbjct: 338 LVQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 376
>gi|350399379|ref|XP_003485505.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Bombus
impatiens]
Length = 381
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/339 (42%), Positives = 199/339 (58%), Gaps = 25/339 (7%)
Query: 59 PLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSE 118
P+ EAA+LE+ L+ ++TPVS++QELLSRRGT PKYELIQ+EGAI+EPIF+YR+++
Sbjct: 47 PISEAAQLEMKSLS--NKTPVSILQELLSRRGTTPKYELIQVEGAIHEPIFRYRVTVADV 104
Query: 119 SRLYV-AIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL-------MCQKENLF-------- 162
V A+G+GKSKKEAKH AA++VLD+L + E + ENL
Sbjct: 105 VDPIVSAMGTGKSKKEAKHAAARAVLDKLCRLNSESPDSPLPNNLSDSENLQELSGYGEE 164
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
K+ NP+G LQE CM+R WPPP Y E GLPHER FT+ V Y+E G GKSKK+AK
Sbjct: 165 KIITNPIGALQEMCMSRHWPPPKYTIENEEGLPHERQFTIVCSVLKYREVGQGKSKKVAK 224
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG----LKHTHDSTFLTPQILKKIQQY 278
R AA M + L + E + E + N L+ + ST T L K+ Q+
Sbjct: 225 RHAAHKMWQALHYMNTENSNIDEDEVLQRNANVNARYADLRGSKISTLTTIHSL-KVSQF 283
Query: 279 HTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQS 338
H T L E L L D + + +L++++ E ++ V++VDIEEKS + Q
Sbjct: 284 HKSLKSSTGVKLFE--LQNTCLNDGDVNLVQFLQEIASEQQFEVTYVDIEEKSISGKCQC 341
Query: 339 LLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+QL+T PV V G G + + A+ A AL++L+IM +
Sbjct: 342 LVQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 380
>gi|340721164|ref|XP_003398995.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Bombus
terrestris]
Length = 388
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 199/338 (58%), Gaps = 25/338 (7%)
Query: 60 LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
+ EAA+LE+ L+ ++TP+S++QELLSRRGT PKYELIQ+EGAI+EPIF+YR+++
Sbjct: 55 ISEAAQLEMKSLS--NKTPISILQELLSRRGTTPKYELIQVEGAIHEPIFRYRVTVADVV 112
Query: 120 RLYV-AIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL-------MCQKENLF--------K 163
V A+G+GKSKKEAKH AA++VLD+L + E + ENL K
Sbjct: 113 DPIVSAMGTGKSKKEAKHAAARAVLDKLCRLNSESPDSPLPNNLSDSENLQELSGYGEEK 172
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
+ NP+G LQE CM+R WPPP Y E GLPHER FT+ V Y+E G GKSKK+AKR
Sbjct: 173 IITNPIGALQEMCMSRHWPPPKYTIENEEGLPHERQFTIVCSVLKYREHGQGKSKKVAKR 232
Query: 224 EAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG----LKHTHDSTFLTPQILKKIQQYH 279
AA M + L + E + E + + LK + ST T L K+ Q+H
Sbjct: 233 HAAHKMWQALHYMNTESSNIDEDEVLQRNANVSARYADLKGSKISTLTTIHSL-KVSQFH 291
Query: 280 TVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
T L E L L D + + +L++++ E ++ V++VDIEEKS + +Q L
Sbjct: 292 KSLKSSTGVKLFE--LQNAYLNDGDVNLVQFLQEIASEQQFEVTYVDIEEKSISGKYQCL 349
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
+QL+T PV V G G + + A+ A AL++L+IM +
Sbjct: 350 VQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 387
>gi|91091212|ref|XP_966668.1| PREDICTED: similar to tar RNA binding protein [Tribolium castaneum]
gi|270013108|gb|EFA09556.1| hypothetical protein TcasGA2_TC011666 [Tribolium castaneum]
Length = 384
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 150/346 (43%), Positives = 215/346 (62%), Gaps = 36/346 (10%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
L L E A+LE+ L T +TPVS++QELLSRRG PKYEL+QIEGAI+EPIF+YR+ + +
Sbjct: 48 LSLSEEAKLEMASLPT--KTPVSVLQELLSRRGATPKYELVQIEGAIHEPIFRYRVFINN 105
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEK-------------LMCQKENLF-- 162
+ VA G+G+SKK+AKH AAK++LD L+G+ + + Q + F
Sbjct: 106 D---LVATGTGRSKKDAKHAAAKNLLDVLVGKQSPEQANASNGTPGANDITAQVVSPFDD 162
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
KV NP+G LQE CM+R+WPPP YE E GLPHER FT+ V +KE G GKSKK+AK
Sbjct: 163 KVMGNPIGWLQEMCMSRRWPPPSYEMEHEEGLPHERQFTIACQVLKFKEVGTGKSKKLAK 222
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDE---------KGESNGLKHTHDSTFLTPQILK 273
R AA M + L+ +P+E QG D DE +G +GLK + T L Q +
Sbjct: 223 RMAAHKMWQALQDMPLEGNNLPQGYDDDEELAAKMCNLQGRYSGLKDSKIPT-LNIQHTQ 281
Query: 274 KIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVED--PILYLEDLSDELKYRVSFVDIEEKS 331
K+ Q+H Q + GP L++L +N++ +D I +L +++ E ++ V++VDIEEK+
Sbjct: 282 KVSQFHKALKQ-SNGPKLKEL---QNIVLNSKDFNFIQFLHEIASEQQFEVTYVDIEEKA 337
Query: 332 KADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
+ Q L+QL+T PV V G GA+ + A+ A AL++L+IM++
Sbjct: 338 LSGKSQCLVQLSTLPVAVCYGAGATPKEAQSAAALNALEYLRIMSK 383
>gi|195115174|ref|XP_002002139.1| GI17218 [Drosophila mojavensis]
gi|193912714|gb|EDW11581.1| GI17218 [Drosophila mojavensis]
Length = 454
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 197/362 (54%), Gaps = 44/362 (12%)
Query: 54 STNNLPLEEAARLEVMRLNTGD------RTPVSLMQELLSRRGTAPKYELIQIEGAINEP 107
ST LP EE + +N D +TPVS++QELLSRRG P YEL+QIEGAI+EP
Sbjct: 98 STGMLPTEETLKF----VNDTDANGLAMKTPVSILQELLSRRGITPGYELVQIEGAIHEP 153
Query: 108 IFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG------------------- 148
F++R+S + + A+G+G+SKKEAKH AA++++D+LIG
Sbjct: 154 TFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKLIGVQLETQGNSAAAAAAAVGC 213
Query: 149 -------RDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFT 201
+ L + K+ NP+G LQE CM R+WPPP YETE GLPHER+FT
Sbjct: 214 SMAGSGGDGNANLTGSGDGGDKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFT 273
Query: 202 VCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHT 261
+ + Y E G GKSKKIAKR AA M L+ PI+ + + +G++ H
Sbjct: 274 IACTILNYHEVGKGKSKKIAKRLAAHKMWTRLQETPIDAAKINDSLCGELEGDARINDHY 333
Query: 262 H----DSTFLTPQIL--KKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLS 315
+ D T T L K+ Q+H T LL+ L L D I L D++
Sbjct: 334 YGDLKDITVPTLTTLHSNKVSQFHKTLKNATGKKLLK--LQKTCLKSSKIDYIKLLSDIA 391
Query: 316 DELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
E ++ V++VDIEE++ + FQ L+QL+T PV V GTG++ A+ A AL++L+IM
Sbjct: 392 AENQFEVTYVDIEERTFSSQFQCLVQLSTLPVGVCHGTGSTASEAQRHAAQNALEYLKIM 451
Query: 376 NR 377
+
Sbjct: 452 TK 453
>gi|198476324|ref|XP_001357331.2| GA19915 [Drosophila pseudoobscura pseudoobscura]
gi|198137644|gb|EAL34400.2| GA19915 [Drosophila pseudoobscura pseudoobscura]
Length = 477
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 185/334 (55%), Gaps = 39/334 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QE+LSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 150 KTPVSILQEILSRRGITPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAK 209
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVEP----------------------NPVGQLQ 173
H AA++++D+L+G + +P NP+G LQ
Sbjct: 210 HAAARALIDKLMGAQLPEAASSATATSAADPTAAGSGGDCNTAVGDPDDKIVGNPIGLLQ 269
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
E CM R+WPPP Y TE GLPHER+FT+ + Y+E G GKSKKIAKR AA M L
Sbjct: 270 ELCMQRRWPPPTYATETEMGLPHERLFTIACTILQYREIGKGKSKKIAKRSAAHKMWSRL 329
Query: 234 ETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTF----------LTPQILKKIQQYHTVFS 283
+ PI+ + +D E G +D+ + LT Q K+ Q+H
Sbjct: 330 QDTPIDA-----AKVLDVCNELEGDSRINDNYYGDLKDITVPTLTTQHSNKVSQFHKTLK 384
Query: 284 QKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLT 343
T LL KL T V+ P L L D++ E ++ V++VDIEEK+ FQ L+QL+
Sbjct: 385 NATGKKLL-KLQKTCLKNTTVDHPKL-LTDIAAENQFEVTYVDIEEKTFTGQFQCLVQLS 442
Query: 344 TTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
T PV V GTG + A+ A AL++L+IM +
Sbjct: 443 TLPVGVCHGTGPTAREAQRHAAQNALEYLKIMTK 476
>gi|195156001|ref|XP_002018889.1| GL26052 [Drosophila persimilis]
gi|194115042|gb|EDW37085.1| GL26052 [Drosophila persimilis]
Length = 470
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 185/334 (55%), Gaps = 39/334 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QE+LSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 143 KTPVSILQEILSRRGITPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAK 202
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVEP----------------------NPVGQLQ 173
H AA++++D+L+G + +P NP+G LQ
Sbjct: 203 HAAARALIDKLMGAQLPEAASSATATSAADPTAAGSGGDCNTAVGDPDDKIVGNPIGLLQ 262
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
E CM R+WPPP Y TE GLPHER+FT+ + Y+E G GKSKKIAKR AA M L
Sbjct: 263 ELCMQRRWPPPTYATETEMGLPHERLFTIACTILQYREIGKGKSKKIAKRSAAHKMWSRL 322
Query: 234 ETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTF----------LTPQILKKIQQYHTVFS 283
+ PI+ + +D E G +D+ + LT Q K+ Q+H
Sbjct: 323 QDTPIDA-----AKVLDVCNELEGDSRINDNYYGDLKDITVPTLTTQHSNKVSQFHKTLK 377
Query: 284 QKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLT 343
T LL KL T V+ P L L D++ E ++ V++VDIEEK+ FQ L+QL+
Sbjct: 378 NATGKKLL-KLQKTCLKNTTVDHPKL-LTDIAAENQFEVTYVDIEEKTFTGQFQCLVQLS 435
Query: 344 TTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
T PV V GTG + A+ A AL++L+IM +
Sbjct: 436 TLPVGVCHGTGPTAREAQRHAAQNALEYLKIMTK 469
>gi|195351293|ref|XP_002042169.1| GM10477 [Drosophila sechellia]
gi|194123993|gb|EDW46036.1| GM10477 [Drosophila sechellia]
Length = 464
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 187/334 (55%), Gaps = 35/334 (10%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 133 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 192
Query: 136 HNAAKSVLDQLIGR-------------------------DDEKLMCQKENLFKVEPNPVG 170
H AA++++D+LIG + + K NP+G
Sbjct: 193 HAAARALIDKLIGAQLPESPSSSAGPSVTGLTVAGSGEDGNANATGGGDAGEKTVGNPIG 252
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE CM R+WPPP YETE GLPHER+FT+ + Y+E G GKSKKIAKR AA M
Sbjct: 253 WLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW 312
Query: 231 KFLETVPIE-------IPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFS 283
L+ PI+ I + +GE + LK T LT Q K+ Q+H
Sbjct: 313 VRLQETPIDSGKISDSICGELEGEPRSSENYYGELKDISVPT-LTTQHSNKVSQFHKTLK 371
Query: 284 QKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLT 343
T LL+ L L + D I L +++ E ++ V++VDIEEK+ + FQ L+QL+
Sbjct: 372 NSTGKKLLK--LQKTCLKNNKIDYIKLLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLS 429
Query: 344 TTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
T PV V G+GA+ A+ A AL++L+IM +
Sbjct: 430 TLPVGVCHGSGATAADAQRHAAQNALEYLKIMTK 463
>gi|195472607|ref|XP_002088591.1| GE18652 [Drosophila yakuba]
gi|194174692|gb|EDW88303.1| GE18652 [Drosophila yakuba]
Length = 465
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 189/336 (56%), Gaps = 39/336 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 134 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 193
Query: 136 HNAAKSVLDQLIGR-------------------------DDEKLMCQKENLFKVEPNPVG 170
H AA++++D+LIG + + K+ NP+G
Sbjct: 194 HAAARALIDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDAGDKIVGNPIG 253
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE CM R+WPPP YETE GLPHER+FT+ + Y+E G GKSKKIAKR AA M
Sbjct: 254 WLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW 313
Query: 231 KFLETVPIE-------IPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFS 283
L+ PI+ I + +GE + LK T LT Q K+ Q+H
Sbjct: 314 MRLQETPIDSGKISDSICGELEGEPRSSENYYGELKDISVPT-LTTQHSNKVSQFHKTLK 372
Query: 284 QKTKGPL--LEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQ 341
T L L+K N ID ++ L +++ E ++ V++VDIEEK+ + FQ L+Q
Sbjct: 373 NATGKKLLKLQKTCLKSNKIDYIK----LLGEIATENQFEVTYVDIEEKTFSGQFQCLVQ 428
Query: 342 LTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+T PV V G+G++ A+ A AL++L+IM +
Sbjct: 429 LSTLPVGVCHGSGSTAADAQRHAAQNALEYLKIMTK 464
>gi|195578966|ref|XP_002079333.1| loquacious [Drosophila simulans]
gi|194191342|gb|EDX04918.1| loquacious [Drosophila simulans]
Length = 464
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 187/334 (55%), Gaps = 35/334 (10%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 133 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 192
Query: 136 HNAAKSVLDQLIGRD-------------------------DEKLMCQKENLFKVEPNPVG 170
H AA++++D+LIG + + K NP+G
Sbjct: 193 HAAARALIDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDVNANATGGGDAGEKTVGNPIG 252
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE CM R+WPPP YETE GLPHER+FT+ + Y+E G GKSKKIAKR AA M
Sbjct: 253 WLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW 312
Query: 231 KFLETVPIE-------IPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFS 283
L+ PI+ I + +GE + LK T LT Q K+ Q+H
Sbjct: 313 VRLQETPIDSGKISDSICGELEGEPRSSENYYGELKDISVPT-LTTQHSNKVSQFHKTLK 371
Query: 284 QKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLT 343
T LL+ L L + D I L +++ E ++ V++VDIEEK+ + FQ L+QL+
Sbjct: 372 NATGKKLLK--LQKTCLKNNKIDYIKLLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLS 429
Query: 344 TTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
T PV V G+GA+ A+ A AL++L+IM +
Sbjct: 430 TLPVGVCHGSGATAADAQRHAAQNALEYLKIMTK 463
>gi|195398117|ref|XP_002057671.1| GJ17975 [Drosophila virilis]
gi|194141325|gb|EDW57744.1| GJ17975 [Drosophila virilis]
Length = 481
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 198/365 (54%), Gaps = 50/365 (13%)
Query: 54 STNNLPLEEAARLEVMRLNTGD------RTPVSLMQELLSRRGTAPKYELIQIEGAINEP 107
ST LP EE + +N D +TPVS++QELLSRRG P YEL+QIEGAI+EP
Sbjct: 125 STGMLPPEETLKF----VNETDANGLTMKTPVSILQELLSRRGITPGYELVQIEGAIHEP 180
Query: 108 IFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG------------------- 148
F++R+S + + A+G+G+SKKEAKH AA++++D+LIG
Sbjct: 181 TFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKLIGVQLESQGNSAAAAAAAVGC 240
Query: 149 -------RDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFT 201
+ + + K+ NP+G LQE CM R+WPPP YETE GLPHER+FT
Sbjct: 241 SMAGSGGDGNANVTGSGDGGDKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFT 300
Query: 202 VCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE-------IPEKKQGEDVDEKGE 254
+ + ++E G GKSKKIAKR AA M L+ PI+ I + +G D +
Sbjct: 301 IACTILNFREVGKGKSKKIAKRLAAHKMWTRLQETPIDAAKINDSICSELEG---DPRIN 357
Query: 255 SNGLKHTHDSTF--LTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLE 312
N D T LT Q K+ Q+H T LL+ L L D I L
Sbjct: 358 DNYYGDLKDITVPTLTTQHSNKVSQFHKALKNATGKKLLK--LQKTCLKSSKIDYIKLLS 415
Query: 313 DLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
+++ E ++ V++VDIEE++ + FQ L+QL+T PV V GTG++ A+ A AL++L
Sbjct: 416 EIAVENQFEVTYVDIEERTFSGQFQCLVQLSTLPVGVCHGTGSTTSEAQRHAAQNALEYL 475
Query: 373 QIMNR 377
+IM +
Sbjct: 476 KIMTK 480
>gi|332029664|gb|EGI69553.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Acromyrmex echinatior]
Length = 377
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 143/339 (42%), Positives = 204/339 (60%), Gaps = 28/339 (8%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LPL EAARLE+ L + +TPVS++QELLSRRGT PKYEL+QIEGAI+EP F+YR+++T
Sbjct: 47 LPLHEAARLEMKSLPS--KTPVSVLQELLSRRGTIPKYELVQIEGAIHEPTFRYRVTVTD 104
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL-------MCQKENLF-------- 162
VA+G+G++KKEAKH AAK+VLD+LIG + + + + +NL
Sbjct: 105 ----VVAMGTGRAKKEAKHAAAKAVLDKLIGVNTDGVESPIPNSLPDSQNLQELQTYGEE 160
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
K+ NP+G LQE CM+R WPPP Y E GLPHER FT+ + Y+E G GKSKK+AK
Sbjct: 161 KIVNNPIGALQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSILKYREVGQGKSKKVAK 220
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG----LKHTHDSTFLTPQILKKIQQY 278
R AA M + L + + P + E V N LK + ST T + ++ ++
Sbjct: 221 RHAAHKMWQALHEMNNQAPSVDEDEIVQRNANVNARYADLKGSKISTLTTIHSI-QVSKF 279
Query: 279 HTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQS 338
H T L + L D + + +L++++ E ++ V++VDIEEKS + FQ
Sbjct: 280 HKSLKSSTGVKLFQ--LQNTCFNDGDVNLVQFLQEIASEQQFEVTYVDIEEKSISGKFQC 337
Query: 339 LLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+QL+T PV V G GA+ + A+ A AL++L+IM +
Sbjct: 338 LVQLSTLPVAVCYGCGATSKDAQASAAQNALEYLKIMTK 376
>gi|194860648|ref|XP_001969628.1| GG23848 [Drosophila erecta]
gi|190661495|gb|EDV58687.1| GG23848 [Drosophila erecta]
Length = 464
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 188/336 (55%), Gaps = 39/336 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 133 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 192
Query: 136 HNAAKSVLDQLIGR-------------------------DDEKLMCQKENLFKVEPNPVG 170
H AA++++D+LIG + + K+ NP+G
Sbjct: 193 HAAARALIDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDAGDKIVGNPIG 252
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE CM R+WPPP YETE GLPHER+FT+ + Y+E G GKSKKIAKR AA M
Sbjct: 253 WLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW 312
Query: 231 KFLETVPIE-------IPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFS 283
L+ PI+ I + +GE + LK T LT Q K+ Q+H
Sbjct: 313 MRLQETPIDSGKISDSICGELEGEPRSSENYYGELKDISVPT-LTTQHSNKVSQFHKTLK 371
Query: 284 QKTKGPL--LEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQ 341
T L L+K N ID ++ L +++ E ++ V++VDIEEK+ + FQ L+Q
Sbjct: 372 NATGKKLLKLQKTCLKSNKIDYIK----LLGEIATENQFEVTYVDIEEKTFSGQFQCLVQ 427
Query: 342 LTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+T PV V G+G + A+ A AL++L+IM +
Sbjct: 428 LSTLPVGVCHGSGPTAADAQRHAAQNALEYLKIMTK 463
>gi|195434256|ref|XP_002065119.1| GK14845 [Drosophila willistoni]
gi|194161204|gb|EDW76105.1| GK14845 [Drosophila willistoni]
Length = 512
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 201/366 (54%), Gaps = 48/366 (13%)
Query: 54 STNNLPLEEAARL--EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKY 111
S++++P +EA R E +TPVS++QELLSRRG P YEL+QIEGAI+EP F++
Sbjct: 152 SSSSMPTDEALRFVNETDANGLAMKTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRF 211
Query: 112 RISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI------------------------ 147
R+S + + A+G+G+SKKEAKH AA++++D+LI
Sbjct: 212 RVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKLIVVQLPETMNSAGVGPGGGAVGSSA 271
Query: 148 ------GRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFT 201
G + ++ K+ NP+G LQE CM R+WPPP YETE GLPHER+FT
Sbjct: 272 AGSGGDGNSNVAPGSASDSGDKIVGNPIGWLQEMCMQRRWPPPSYETETELGLPHERLFT 331
Query: 202 VCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHT 261
+ + Y+E G GKSKKIAKR AA M L+ PI+ K + + + E++
Sbjct: 332 IACTILNYREVGKGKSKKIAKRLAAHKMWTRLQEAPIDA--VKINDSICSEMEND--PRN 387
Query: 262 HDSTF----------LTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYL 311
+DS + LT Q K+ Q+H T LL+ L L + D I L
Sbjct: 388 NDSYYGDLKDISVPNLTTQHSNKVSQFHKTLKNATGKKLLK--LQKTCLKNSKIDYIKLL 445
Query: 312 EDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDF 371
+++ E ++ V++VDIEEK+ FQ L+QL+T PV V GTG++ A+ A AL++
Sbjct: 446 GEIATENQFEVTYVDIEEKTYTVQFQCLVQLSTLPVGVCHGTGSTTGEARRNAAQNALEY 505
Query: 372 LQIMNR 377
L+IM +
Sbjct: 506 LKIMTK 511
>gi|307172924|gb|EFN64091.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Camponotus floridanus]
Length = 376
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 144/339 (42%), Positives = 202/339 (59%), Gaps = 28/339 (8%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LPL EAARLE+ L + +TPVS++QELLSRRGT PKYEL+QIEGAI+EP F+YR+++
Sbjct: 46 LPLHEAARLEMKALPS--KTPVSVLQELLSRRGTIPKYELVQIEGAIHEPTFRYRVTVAD 103
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL-------MCQKENLF-------- 162
VA+G+G+SKKEAKH AAK+VLD+LIG + E + +NL
Sbjct: 104 ----VVAMGTGRSKKEAKHAAAKAVLDKLIGVNTETAESPLPNSLPDSQNLQELQSYGEE 159
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
KV NP+G LQE CM+R WPPP Y E GLPHER FT+ + Y+E G GKSKK+AK
Sbjct: 160 KVVNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSILKYREVGQGKSKKVAK 219
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG----LKHTHDSTFLTPQILKKIQQY 278
R AA M + L + + P + E V + LK + ST T + ++ ++
Sbjct: 220 RHAAHKMWQALHDMNNQAPSVDEDEIVQRNANVSARYADLKGSKISTLTTVHSI-QVSKF 278
Query: 279 HTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQS 338
H T L + L D + + +L++++ E ++ V++VDIEEKS + FQ
Sbjct: 279 HKSLKSSTGVKLFQ--LQNTCFNDGDVNLVQFLQEIASEQQFEVTYVDIEEKSISGKFQC 336
Query: 339 LLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+QL+T PV V G GA+ + A+ A AL++L+IM +
Sbjct: 337 LVQLSTLPVAVCYGCGATSKDAQASAAQNALEYLKIMTK 375
>gi|242022991|ref|XP_002431920.1| tar RNA binding protein, putative [Pediculus humanus corporis]
gi|212517264|gb|EEB19182.1| tar RNA binding protein, putative [Pediculus humanus corporis]
Length = 318
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 192/325 (59%), Gaps = 32/325 (9%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+TPVSL+QE+LSR+GT PKYEL+QIEGAI+EP F+YR+++ VAIG+G+SKK A
Sbjct: 3 SKTPVSLLQEMLSRQGTTPKYELVQIEGAIHEPTFRYRVTVADN----VAIGTGRSKKVA 58
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLF-----------------KVEPNPVGQLQEACM 177
KH AAK++LD+L G K C++ N+ K+ NP+G LQE C+
Sbjct: 59 KHTAAKNLLDKLNG----KAACEEFNISPIETGRGSPNQVINSFDKISGNPIGTLQEMCI 114
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
+WPPPVYE GLPHER FT+ V Y+E G GKSKK+AKR+AA M + L+
Sbjct: 115 CHRWPPPVYEMTCEEGLPHERQFTMACIVFKYREVGSGKSKKLAKRQAAHKMWEKLQQCS 174
Query: 238 ----IEIPEKKQGEDVDEKGESNG-LKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLE 292
+ ++ G +VD +K++ ST P K+ +H Q + GP+L
Sbjct: 175 PLPQLGYQDEVGGYNVDSMSNRFADVKNSKISTLTNPH-GHKVSMFHKNLKQ-SNGPVLN 232
Query: 293 KLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCG 352
KL ++ DPI +L++++ E + V++V+IEE + + Q L+QL+ PV V G
Sbjct: 233 KLQIFSSVDKNNFDPIAFLQEIATEQHFEVTYVNIEETTVSGKCQCLVQLSVLPVAVCHG 292
Query: 353 TGASIEVAKIEAVYRALDFLQIMNR 377
TG++ A+ ++ AL++L+IM +
Sbjct: 293 TGSTSSEAQSDSALNALEYLKIMTK 317
>gi|19921250|ref|NP_609646.1| loquacious, isoform B [Drosophila melanogaster]
gi|17945270|gb|AAL48692.1| RE14437p [Drosophila melanogaster]
gi|22946404|gb|AAF53295.2| loquacious, isoform B [Drosophila melanogaster]
gi|71733132|gb|AAZ40191.1| R3D1-L [Drosophila melanogaster]
gi|220947980|gb|ACL86533.1| loqs-PB [synthetic construct]
gi|220957210|gb|ACL91148.1| loqs-PB [synthetic construct]
Length = 465
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 187/336 (55%), Gaps = 39/336 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 134 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 193
Query: 136 HNAAKSVLDQLIGR-------------------------DDEKLMCQKENLFKVEPNPVG 170
H AA++++D+LIG + + K NP+G
Sbjct: 194 HAAARALIDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKTVGNPIG 253
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE CM R+WPPP YETE GLPHER+FT+ + Y+E G GKSKKIAKR AA M
Sbjct: 254 WLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW 313
Query: 231 KFLETVPIE-------IPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFS 283
L+ PI+ I + +GE + LK T LT Q K+ Q+H
Sbjct: 314 MRLQETPIDSGKISDSICGELEGEPRSSENYYGELKDISVPT-LTTQHSNKVSQFHKTLK 372
Query: 284 QKTKGPL--LEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQ 341
T L L+K N ID ++ L +++ E ++ V++VDIEEK+ + FQ L+Q
Sbjct: 373 NATGKKLLKLQKTCLKNNKIDYIK----LLGEIATENQFEVTYVDIEEKTFSGQFQCLVQ 428
Query: 342 LTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+T PV V G+G + A+ A AL++L+IM +
Sbjct: 429 LSTLPVGVCHGSGPTAADAQRHAAQNALEYLKIMTK 464
>gi|194765827|ref|XP_001965027.1| GF23153 [Drosophila ananassae]
gi|190617637|gb|EDV33161.1| GF23153 [Drosophila ananassae]
Length = 472
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 186/340 (54%), Gaps = 44/340 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 138 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 197
Query: 136 HNAAKSVLDQLIG----------------------------RDDEKLMCQKENLFKVEPN 167
H AA++++D+LIG + + ++ N
Sbjct: 198 HAAARALIDKLIGVQLPESPNSGAAGSSAAGAGLTSVGSGGDGNASAAGGGDAGDRIVGN 257
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
P+G LQE CM R+WPPP YETE GLPHER+FT+ + Y+E G GKSKKIAKR AA
Sbjct: 258 PIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAH 317
Query: 228 NMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTF----------LTPQILKKIQQ 277
M L+ PI+ K + + GE G + D+ + LT Q K+ Q
Sbjct: 318 RMWVRLQETPID--SAKISDSIC--GELEGEPRSSDNYYGELKDISVPTLTTQHSNKVSQ 373
Query: 278 YHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQ 337
+H T LL+ L L D I L +++ E ++ V++VDIEEK+ FQ
Sbjct: 374 FHKTLKNATGKKLLK--LQKTCLKSAKMDYIKLLGEIATENQFEVTYVDIEEKTYTGQFQ 431
Query: 338 SLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+QL+T PV V GTG + A+ A AL++L+IM +
Sbjct: 432 CLVQLSTLPVGVCHGTGPTAADAQRHAAQNALEYLKIMTK 471
>gi|307215189|gb|EFN89961.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Harpegnathos saltator]
Length = 381
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 143/340 (42%), Positives = 202/340 (59%), Gaps = 25/340 (7%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LPL EAAR+E+ + + +TPVS++QELLSRRGT PKYEL+QIEGAI+EP F+YR+++
Sbjct: 46 LPLHEAARMEMKAIPS--KTPVSVLQELLSRRGTIPKYELVQIEGAIHEPTFRYRVTVAD 103
Query: 118 ESRLYV-AIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL-------MCQKENLF------- 162
V A+G+G+SKKEAKH AAK+VLD+LIG + E + +NL
Sbjct: 104 VVDPIVSAMGTGRSKKEAKHAAAKAVLDKLIGVNTESSESPIPNNLPDSQNLQELQTYGE 163
Query: 163 -KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIA 221
KV NP+G LQE CM+R WPPP Y E GLPHER FT+ + Y+E G GKSKK+A
Sbjct: 164 EKVMNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSILKYREVGQGKSKKVA 223
Query: 222 KREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG----LKHTHDSTFLTPQILKKIQQ 277
KR AA M + L + E P + E V + LK + ST T + ++ +
Sbjct: 224 KRHAAHKMWQALHDMNNEAPNVDEDEIVQRNANVSARYADLKGSKISTLTTVHSI-QVSK 282
Query: 278 YHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQ 337
+H T L + L D + + +L++++ E ++ V++VDIEEKS + FQ
Sbjct: 283 FHKSLKSSTGVKLFQ--LQNTCFNDGDVNLVQFLQEIASEQQFEVTYVDIEEKSISGKFQ 340
Query: 338 SLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+QL+T PV V G GA+ + A+ A AL++L+IM +
Sbjct: 341 CLVQLSTLPVAVCYGCGATSKDAQASAAQNALEYLKIMTK 380
>gi|345489251|ref|XP_001601132.2| PREDICTED: probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Nasonia vitripennis]
Length = 392
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/344 (42%), Positives = 203/344 (59%), Gaps = 36/344 (10%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LPL+EAARLE+ L ++TPVS++QELLSRRGT PKYEL+QIEGAI+EP F+YR+++
Sbjct: 60 LPLDEAARLEMKALP--NKTPVSVLQELLSRRGTTPKYELVQIEGAIHEPTFRYRVTVAD 117
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF--------------- 162
VA+G+G+SKKEAKH AAK+VLD+LIG + E N
Sbjct: 118 ----VVAMGTGRSKKEAKHAAAKAVLDKLIGVNTENAEAPIPNSIPDSQNIQEIQSGYGE 173
Query: 163 -KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIA 221
KV NP+G LQE CM+R WPPP Y E GLPHER FT+ + Y++ G GKSKK+A
Sbjct: 174 EKVVNNPIGSLQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSILKYRQVGQGKSKKLA 233
Query: 222 KREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG--------LKHTHDSTFLTPQILK 273
KR+AA M + L+ + QG D DE + N LK + +T TP
Sbjct: 234 KRQAAHKMWQSLQDTN---SNRTQGVDEDEIVQRNANVNAHYADLKDSKIATLTTPHS-H 289
Query: 274 KIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKA 333
K+ Q+H T L E L L D + + +L++++ E ++ V++VDIEEKS +
Sbjct: 290 KVSQFHKNLKSSTGVKLFE--LQNTCLNDGDVNLVQFLQEIASEQQFEVTYVDIEEKSIS 347
Query: 334 DGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
Q L+QL+T PV V G+G + + A+ A AL++L+IM +
Sbjct: 348 GKCQCLVQLSTLPVAVCYGSGMTSKDAQAAAAQNALEYLKIMTK 391
>gi|357603048|gb|EHJ63609.1| loquacious [Danaus plexippus]
Length = 399
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 201/338 (59%), Gaps = 33/338 (9%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LPL+EAA+ E+ L +TPVS++QELL+RRGT PKYEL+QIEG I+EP F+YR+++
Sbjct: 76 LPLDEAAKREMESLPM--KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVAD 133
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR------------DDEKLMCQKENLFKVE 165
VA+G+G+SKKEAKH+AAK++LD+L G + ++ E+ K+
Sbjct: 134 ----LVALGTGRSKKEAKHSAAKALLDKLTGATPADQPTNGTVPETSTVVSSFED--KLM 187
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTG----LPHERMFTVCAYVNVYKEEGMGKSKKIA 221
NPVG LQE CM+R WPPP Y E LPHER FT+ + +E G GKSKK+A
Sbjct: 188 GNPVGWLQELCMSRFWPPPSYHAENDDNVARRLPHERQFTIICTLLKRREVGTGKSKKLA 247
Query: 222 KREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS--TFLTPQILKKIQQYH 279
KR+AA M + L+ P PE Q E +E G + DS T LT K+ Q+H
Sbjct: 248 KRQAAYKMWQALQDNP---PEVFQPE--EEGGVAARYADLKDSKITTLTTSHSHKVSQFH 302
Query: 280 TVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
Q GP L KL T L ++ + + +L++++ E + V++VDIEEK+ Q L
Sbjct: 303 KHLKQSV-GPNLVKLQVT-PLNNKDFNFVQFLQEIASEQSFEVTYVDIEEKTMTGRSQCL 360
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
+QL+T PV V G+G + + A+ A AL++L+IM +
Sbjct: 361 VQLSTLPVAVCYGSGLTSKDAQSSAAQNALEYLKIMTK 398
>gi|158298694|ref|XP_318876.4| AGAP009781-PA [Anopheles gambiae str. PEST]
gi|157014008|gb|EAA14308.5| AGAP009781-PA [Anopheles gambiae str. PEST]
Length = 341
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 203/349 (58%), Gaps = 39/349 (11%)
Query: 59 PLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSE 118
P+EEA + E+ N +TP+S++QELLSRRG P+Y+LIQ+EGA++EP F+YR+S +
Sbjct: 1 PIEEALKSELTTNNM--KTPISVLQELLSRRGITPQYDLIQVEGAVHEPTFRYRVSYQDK 58
Query: 119 SRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR---------------DDEKLMCQKENLFK 163
A+G+GKSKKEAKH AAK+++D+L G D + C+ N+
Sbjct: 59 D----AMGTGKSKKEAKHAAAKALIDKLTGSIFLDHPAVYMNVHKPDTQFHSCRVVNVHT 114
Query: 164 V-------EP--NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGM 214
EP NP+G LQE CM R+ PPP YETE GLPHER FT+ V Y+E G
Sbjct: 115 NNNVNGEEEPTGNPIGWLQEMCMARRLPPPTYETETEEGLPHERQFTIACVVLNYREVGE 174
Query: 215 GKSKKIAKREAALNMLKFLETVPIE------IPEKKQGEDVDEKGESNGLKHTHDSTFLT 268
GKSKKIAKR+AA M + L+ P+E + +++ E+ G GLK T T
Sbjct: 175 GKSKKIAKRQAAQRMWQRLQDQPLEPSQIMQLLDEEGNEETGYAGRYAGLKDVCIPTLTT 234
Query: 269 PQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIE 328
Q K+ Q+H + G L++ L +L D D I L D++ E ++ V++VDIE
Sbjct: 235 SQS-HKVSQFHKALKSRA-GKTLQQ-LQNLSLCDRSIDFIRLLADIAKEQRFEVTYVDIE 291
Query: 329 EKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
EK+ FQ L+QL+T PV V G+G SI+ A+ A +L++L+IM +
Sbjct: 292 EKAGNGKFQCLVQLSTMPVAVCHGSGNSIQEAQSYAARNSLEYLKIMTK 340
>gi|24584110|ref|NP_723813.1| loquacious, isoform A [Drosophila melanogaster]
gi|7298056|gb|AAF53296.1| loquacious, isoform A [Drosophila melanogaster]
gi|71733134|gb|AAZ40192.1| R3D1-S [Drosophila melanogaster]
Length = 419
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 174/327 (53%), Gaps = 67/327 (20%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 134 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 193
Query: 136 HNAAKSVLDQLIGR-------------------------DDEKLMCQKENLFKVEPNPVG 170
H AA++++D+LIG + + K NP+G
Sbjct: 194 HAAARALIDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKTVGNPIG 253
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE CM R+WPPP YETE GLPHER+FT+ + Y+E G GKSKKIAKR AA M
Sbjct: 254 WLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW 313
Query: 231 KFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPL 290
L+ PI DS ++ I +++
Sbjct: 314 MRLQETPI------------------------DSGKISDSICGELEG------------- 336
Query: 291 LEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVF 350
EK N ID ++ L +++ E ++ V++VDIEEK+ + FQ L+QL+T PV V
Sbjct: 337 -EKTCLKNNKIDYIK----LLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVC 391
Query: 351 CGTGASIEVAKIEAVYRALDFLQIMNR 377
G+G + A+ A AL++L+IM +
Sbjct: 392 HGSGPTAADAQRHAAQNALEYLKIMTK 418
>gi|170037189|ref|XP_001846442.1| tar RNA binding protein [Culex quinquefasciatus]
gi|167880196|gb|EDS43579.1| tar RNA binding protein [Culex quinquefasciatus]
Length = 390
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 222/389 (57%), Gaps = 54/389 (13%)
Query: 30 VKVEENSPSRVLFDNNEIKQIPKVS-----------------TNNLPLEEAARLEVMRLN 72
++ +P +L DN + Q+ V ++LP+EEA + E+ N
Sbjct: 14 MQTRGGAPGDILGDNPPLGQLNNVQHKRPRGPKKGAATAGKQQDSLPIEEALKTELTGSN 73
Query: 73 TGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
+ +TP+S++QELLSRRG P+Y+L+Q+EGA++EP F+YR+S + A+G+GKSKK
Sbjct: 74 S-MKTPISVLQELLSRRGITPQYDLMQVEGAVHEPTFRYRVSYQDKD----AMGTGKSKK 128
Query: 133 EAKHNAAKSVLDQLIG-------------RDDEKLMCQKENLFKVEP--NPVGQLQEACM 177
EAKH AAK+++D+L G + D + + EP NP+G LQE CM
Sbjct: 129 EAKHAAAKALIDKLTGCSFGDTPVGGVSVKSDPEAGSGDD-----EPSGNPIGWLQEMCM 183
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
R+WPPP YETE GLPHER FT+ V Y+E G GKSKKIAKR+AA M + L+ P
Sbjct: 184 ARRWPPPTYETEMEVGLPHERQFTIACAVLKYREVGKGKSKKIAKRQAAQRMWQRLQDQP 243
Query: 238 IEIPEKKQ--GEDVDEK-------GESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKG 288
+E + Q E+ +E+ G GLK + T +K+ Q+H ++ G
Sbjct: 244 LEPNQIIQMLDEEGNEELKAASISGRYAGLKDVRIPSLTTGHG-QKVSQFHKALKSRS-G 301
Query: 289 PLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVT 348
L +L +T L D+ D + L D++ E ++ V++VDI+EK+ + FQ L+QL+T PV
Sbjct: 302 ESLRRLQNT-CLNDKSVDFVQMLHDIATEQRFEVTYVDIDEKTLSGRFQCLVQLSTLPVA 360
Query: 349 VFCGTGASIEVAKIEAVYRALDFLQIMNR 377
V G+GA+ + A+ A +L++L+IM +
Sbjct: 361 VCHGSGATAKEAQAAAARNSLEYLKIMTK 389
>gi|195049901|ref|XP_001992785.1| GH13466 [Drosophila grimshawi]
gi|193899844|gb|EDV98710.1| GH13466 [Drosophila grimshawi]
Length = 489
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 192/365 (52%), Gaps = 44/365 (12%)
Query: 54 STNNLPLEEAARL--EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKY 111
ST LP+++ + E +TPVS++QE+LSR G P YEL+QIEGAI+EP F++
Sbjct: 127 STGTLPVDDTLKFVNETDANGLAMKTPVSMLQEMLSRLGITPGYELVQIEGAIHEPTFRF 186
Query: 112 RISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEK------------------ 153
R+S + + A+G+G+SKKEAKH AA +++++LIG E
Sbjct: 187 RVSFKDKDTPFTAMGAGRSKKEAKHAAAHALINKLIGVQLESQGNSAAAAAAAAVVGNSL 246
Query: 154 --------------LMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERM 199
+ K+ NP+G LQE CM R+WPPP YETE GLPHER+
Sbjct: 247 AVGSGGDGNGSNANTSGSGDAGDKIVGNPIGLLQEKCMQRRWPPPSYETETEVGLPHERL 306
Query: 200 FTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE-------IPEKKQGEDVDEK 252
FT+ + Y+E G GKSKKIAKR AA M LE PI+ I + +G+ +
Sbjct: 307 FTIACTILHYREVGKGKSKKIAKRLAAHKMWTRLEETPIDANQINDSICNELEGDPRNID 366
Query: 253 GESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLE 312
LK T LT Q K+ Q+H T LL+ L L D + L
Sbjct: 367 SYYGDLKDITVPT-LTTQHSNKVSQFHKTLKNATGKKLLK--LQKTCLKSSKLDYVKLLS 423
Query: 313 DLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
+++ E ++ V++VDIEE++ FQ L+QL+T PV V GTG + A+ A AL++L
Sbjct: 424 EIAMENQFEVTYVDIEERTFTRQFQCLVQLSTLPVGVCLGTGTTPAEAQRHAAQNALEYL 483
Query: 373 QIMNR 377
+IM +
Sbjct: 484 KIMTK 488
>gi|195971116|gb|ACG60900.1| TAR RNA-binding protein 2 [Fenneropenaeus chinensis]
Length = 343
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 188/341 (55%), Gaps = 34/341 (9%)
Query: 60 LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
++ ++ +E M +TPVSL+QEL RRG +PKY+L+QIEGA++EP F YR+++
Sbjct: 9 VDSSSSVEGMSGALPSKTPVSLLQELCMRRGISPKYDLLQIEGAVHEPTFVYRVTVGE-- 66
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP------------- 166
+ A GSG+SKK+AKH AAK+VLD +I P
Sbjct: 67 --FAANGSGQSKKKAKHAAAKAVLDIIIQGGAAGAGGPTSGGAPGAPPELSTQIVSPYDD 124
Query: 167 ----NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
NPVG LQE CM R+WPPP YE G PHER F++ + +E G GKSKK+AK
Sbjct: 125 GIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTREIGTGKSKKLAK 184
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNGLKHTHDSTF--LTPQILKK 274
R+AA M + L+ P+E P+ D D++ +GLK DS LT +K
Sbjct: 185 RQAAYKMTQLLKDQPVEAPQVNVLADDDDEIAQKLAARYSGLK---DSKVLSLTTSDSRK 241
Query: 275 IQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKAD 334
+ +H Q L E L T +L + + + L+D++ E + V++VDIEE S +
Sbjct: 242 VSHFHKNLKQSPGKKLHE--LQTISLSNVNLNFVQMLQDIAQEANFVVTYVDIEELSVSG 299
Query: 335 GFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
Q L+QL+T PV V GTGA+++ A+ A + AL++L+IM
Sbjct: 300 QHQCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLRIM 340
>gi|328905029|gb|AEB54790.1| TRBP1 [Litopenaeus vannamei]
gi|444174849|gb|AGD81191.1| TAR RNA-binding protein 1 [Penaeus monodon]
Length = 343
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 188/341 (55%), Gaps = 34/341 (9%)
Query: 60 LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
++ ++ +E M +TPVSL+QEL RRG +PKY+L+QIEGA++EP F YR+++
Sbjct: 9 VDSSSNVEGMSGALPSKTPVSLLQELCMRRGISPKYDLLQIEGAVHEPTFVYRVTVGE-- 66
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP------------- 166
+ A GSG+SKK+AKH AAK+VLD +I P
Sbjct: 67 --FAANGSGQSKKKAKHAAAKAVLDIIIQGGAAGAGGPTSGGAPGAPPELSTQIVSPYDD 124
Query: 167 ----NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
NPVG LQE CM R+WPPP YE G PHER F++ + +E G GKSKK+AK
Sbjct: 125 GIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTREIGTGKSKKLAK 184
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNGLKHTHDSTF--LTPQILKK 274
R+AA M + L+ P+E P+ D D++ +GLK DS LT +K
Sbjct: 185 RQAAYKMTQLLKDQPVEAPQVNVLADDDDEIAQKLAARYSGLK---DSKVLSLTTSDSRK 241
Query: 275 IQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKAD 334
+ +H Q L E L T +L + + + L+D++ E + V++VDIEE S +
Sbjct: 242 VSHFHKNLKQSPGKKLHE--LQTISLSNVNLNFVQMLQDIAQEANFVVTYVDIEELSVSG 299
Query: 335 GFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
Q L+QL+T PV V GTGA+++ A+ A + AL++L+IM
Sbjct: 300 QHQCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLRIM 340
>gi|332271591|gb|AEE36481.1| TAR RNA-binding protein isoform 1 [Marsupenaeus japonicus]
Length = 343
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 188/341 (55%), Gaps = 34/341 (9%)
Query: 60 LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
++ ++ +E M +TPVSL+QEL RRG +PKY+L+QIEGA++EP F YR+++
Sbjct: 9 VDSSSNVEGMSGALPSKTPVSLLQELCMRRGISPKYDLLQIEGAVHEPTFVYRVTVGE-- 66
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP------------- 166
+ A GSG+SKK+AKH AAK+VLD +I P
Sbjct: 67 --FAANGSGQSKKKAKHAAAKAVLDIIIQGGAAGAGGPTSGGAPGAPPELSTQIVSPYDD 124
Query: 167 ----NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
NPVG LQE CM R+WPPP YE G PHER F++ + +E G GKSKK+AK
Sbjct: 125 GIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTREIGTGKSKKLAK 184
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNGLKHTHDSTF--LTPQILKK 274
R+AA M + L+ P+E P+ D D++ +GLK DS LT +K
Sbjct: 185 RQAAYKMTQLLKDQPVEAPQVNVLADDDDEIAQKLAARYSGLK---DSKVLSLTTSDSRK 241
Query: 275 IQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKAD 334
+ +H Q L E L T +L + + + L+D++ E + V++VDIEE S +
Sbjct: 242 VSHFHKNLKQSPGKKLHE--LQTISLSNVNLNFVQMLQDIAQEANFVVTYVDIEELSVSG 299
Query: 335 GFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
Q L+QL+T PV V GTGA+++ A+ A + AL++L+IM
Sbjct: 300 QHQCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLKIM 340
>gi|321468306|gb|EFX79291.1| hypothetical protein DAPPUDRAFT_24493 [Daphnia pulex]
Length = 254
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 171/303 (56%), Gaps = 53/303 (17%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVSL+QEL ++G PKY+LIQIEGAI+EP FKYR+S+ VA+GSG+SKK+AK
Sbjct: 3 KTPVSLLQELYVKKGINPKYDLIQIEGAIHEPTFKYRVSVGE----LVAMGSGQSKKKAK 58
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVEP-NPVGQLQEACMTRKWPPPVYETEETTGL 194
H AAK+VLD++ G L+ EN+ P NPVG LQE C++ +W PP Y E GL
Sbjct: 59 HAAAKAVLDKIWGGHCSTLL---ENIDDGIPGNPVGNLQELCISHRWAPPSYVLEGENGL 115
Query: 195 PHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGE 254
PHER F + V ++E G+GKSKK+AKR+AA M L+ PIE+P + ED DE+
Sbjct: 116 PHEREFVITCVVENHQEIGVGKSKKLAKRQAAYRMQMKLKDTPIELPNQGGLEDEDEE-- 173
Query: 255 SNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDL 314
L D D L ++
Sbjct: 174 -------------------------------------------VALKDPCLDYFQLLREI 190
Query: 315 SDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQI 374
S E K+ ++VDIEEK+ + +Q LL ++ TP+ V CG+G+S E A+ EA + AL +L++
Sbjct: 191 SAEQKFDATYVDIEEKTHSGRYQCLLTMSLTPIAVVCGSGSSYEEAQKEAAFSALHYLKL 250
Query: 375 MNR 377
M +
Sbjct: 251 MTK 253
>gi|157119564|ref|XP_001659426.1| tar RNA binding protein (trbp) [Aedes aegypti]
gi|108875294|gb|EAT39519.1| AAEL008687-PA [Aedes aegypti]
Length = 329
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 187/330 (56%), Gaps = 58/330 (17%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LP+EEA + E+ N +TP+S++QELLSRRG P+Y+LIQ+EGA++EP F+YR+S
Sbjct: 47 LPIEEALKTELTGTNNM-KTPISVLQELLSRRGITPQYDLIQVEGAVHEPTFRYRVSYQD 105
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP----------N 167
+ A+G+GKSKKEAKH AAK+++D+L G N+ K E N
Sbjct: 106 KD----AMGTGKSKKEAKHAAAKALIDKLAGNAFGDTQTGGLNI-KAEAGLDGDDEPTGN 160
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
P+G LQE CM R+WPPP YETE GLPHER FT+ V Y+E G GKSKKIAKR+AA
Sbjct: 161 PIGWLQEMCMARRWPPPTYETEMEVGLPHERQFTIACAVLKYREVGKGKSKKIAKRQAAQ 220
Query: 228 NMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTK 287
M + L+ P+E + Q +DE+G + T L + + +Q H
Sbjct: 221 RMWQRLQDQPLEPNQIIQM--LDEEG-------NEEVTCLNDKSIDFVQMLH-------- 263
Query: 288 GPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPV 347
+++ E ++ V++VDI+EK+ + FQ L+QL+T PV
Sbjct: 264 -------------------------EIATEQRFEVTYVDIDEKTLSGRFQCLVQLSTLPV 298
Query: 348 TVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
V G+G++ + A+ A +L++L+IM +
Sbjct: 299 AVCHGSGSTAKEAQTAAARNSLEYLKIMTK 328
>gi|322789739|gb|EFZ14905.1| hypothetical protein SINV_08859 [Solenopsis invicta]
Length = 885
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 175/302 (57%), Gaps = 31/302 (10%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LPL EAARLE+ + + +TPVS++QELLSRRGT PKYEL+QIEGAI+EP F+YR+++T
Sbjct: 47 LPLHEAARLEMKSIPS--KTPVSVLQELLSRRGTIPKYELVQIEGAIHEPTFRYRVTVTD 104
Query: 118 ---ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF------------ 162
+ A+G+G+SKKEAKH AAK+VLD+LIG ++E + N
Sbjct: 105 VVEADPIVSAMGTGRSKKEAKHAAAKAVLDKLIGVNNEGVESPLPNSLPDSQSLQELQSY 164
Query: 163 ---KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKK 219
K+ NP+G LQE CM+R WPPP Y E GLPHER FT+ + Y+E G GKSKK
Sbjct: 165 GEEKIVNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSILKYREVGQGKSKK 224
Query: 220 IAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG----LKHTHDSTFLTPQILKKI 275
+AKR+AA M + L + + P + E V + LK + ST T + ++
Sbjct: 225 VAKRQAAHKMWQALHDMNSQTPTVDEEETVQRNTNMSARYADLKGSKISTLTTIHSI-QV 283
Query: 276 QQYHTVFSQKTKGPLLEK------LLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEE 329
++H T L + LL D + + +L++++ E ++ V++VDIEE
Sbjct: 284 SKFHKSLKSSTGVKLFQLQVFILILLQNTCFNDGDVNLVQFLQEIASEQQFEVTYVDIEE 343
Query: 330 KS 331
KS
Sbjct: 344 KS 345
>gi|332271593|gb|AEE36482.1| TAR RNA-binding protein isoform 2 [Marsupenaeus japonicus]
Length = 323
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 183/339 (53%), Gaps = 50/339 (14%)
Query: 60 LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
++ ++ +E M +TPVSL+QEL RRG +PKY+L+QIEGA++EP F YR+++
Sbjct: 9 VDSSSNVEGMSGALPSKTPVSLLQELCMRRGISPKYDLLQIEGAVHEPTFVYRVTVGE-- 66
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP------------- 166
+ A GSG+SKK+AKH AAK+VLD +I P
Sbjct: 67 --FAANGSGQSKKKAKHAAAKAVLDIIIQGGAAGAGGPTSGGAPGAPPELSTQIVSPYDD 124
Query: 167 ----NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
NPVG LQE CM R+WPPP YE G PHER F++ + +E G GKSKK+AK
Sbjct: 125 GIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTREIGTGKSKKLAK 184
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNGLKHTHDSTFLTPQILKKIQ 276
R+AA M + L+ P+E P+ D D++ +GLK + K+
Sbjct: 185 RQAAYKMTQLLKDQPVEAPQVNVLADDDDEIAQKLAARYSGLKDS------------KVL 232
Query: 277 QYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGF 336
T S+KT LS NL + + L+D++ E + V++VDIEE S +
Sbjct: 233 SLTTSDSRKTIS------LSNVNL-----NFVQMLQDIAQEANFVVTYVDIEELSVSGQH 281
Query: 337 QSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
Q L+QL+T PV V GTGA+++ A+ A + AL++L+IM
Sbjct: 282 QCLVQLSTLPVAVCYGTGANVKEAQYAAAHNALEYLKIM 320
>gi|221328528|gb|ACM17807.1| TAR RNA-binding protein 2 isoform 2 [Fenneropenaeus chinensis]
Length = 323
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 183/339 (53%), Gaps = 50/339 (14%)
Query: 60 LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
++ ++ +E M +TPVSL+QEL RRG +PKY+L+QIEGA++EP F YR+++
Sbjct: 9 VDSSSSVEGMSGALPSKTPVSLLQELCMRRGISPKYDLLQIEGAVHEPTFVYRVTVGE-- 66
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP------------- 166
+ A GSG+SKK+AKH AAK+VLD +I P
Sbjct: 67 --FAANGSGQSKKKAKHAAAKAVLDIIIQGGAAGAGGPTSGGAPGAPPELSTQIVSPYDD 124
Query: 167 ----NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
NPVG LQE CM R+WPPP YE G PHER F++ + +E G GKSKK+AK
Sbjct: 125 GIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTREIGTGKSKKLAK 184
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNGLKHTHDSTFLTPQILKKIQ 276
R+AA M + L+ P+E P+ D D++ +GLK + K+
Sbjct: 185 RQAAYKMTQLLKDQPVEAPQVNVLADDDDEIAQKLAARYSGLKDS------------KVL 232
Query: 277 QYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGF 336
T S+KT LS NL + + L+D++ E + V++VDIEE S +
Sbjct: 233 SLTTSDSRKTIS------LSNVNL-----NFVQMLQDIAQEANFVVTYVDIEELSVSGQH 281
Query: 337 QSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
Q L+QL+T PV V GTGA+++ A+ A + AL++L+IM
Sbjct: 282 QCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLRIM 320
>gi|304307737|ref|NP_001182008.1| loquacious [Bombyx mori]
gi|300669735|dbj|BAJ11656.1| loquacious [Bombyx mori]
Length = 382
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 188/339 (55%), Gaps = 32/339 (9%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LPL+EAA+ ++ L T +TPVS++QELL+RR T PKYEL+QIEG I+EP F+YR+++
Sbjct: 56 LPLDEAAKRKMETLPT--KTPVSVLQELLARRETVPKYELLQIEGMIHEPTFRYRVTVAD 113
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR--DDEKLMCQKENLFKVEP--------N 167
A+G+G+SKKEAKH+AAK++LD+L G D+ V P N
Sbjct: 114 ----LFAMGTGRSKKEAKHSAAKALLDKLTGATPSDQTTNGSVPETGAVVPTFEDKLMGN 169
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGL-------PHERMFTVCAYVNVYKEEGMGKSKKI 220
PVG L+ + + T L PHER FT+ + +E G GKSKK+
Sbjct: 170 PVGWLRSCVCHDSGHHHLTMLKTMTMLIDQFQVCPHERQFTIICTLLKRREVGTGKSKKL 229
Query: 221 AKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS--TFLTPQILKKIQQY 278
AKR+AA M + L+ P PE Q + DE G + DS + LT K+ Q+
Sbjct: 230 AKRQAAYKMWQALQDNP---PESFQND--DEGGVAARYADLKDSKISTLTTSHSHKVSQF 284
Query: 279 HTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQS 338
H Q GP L KL T L ++ + + +L++++ E + V++VDIEEKS Q
Sbjct: 285 HKHLKQSV-GPNLAKLQVT-PLNNKDFNFVQFLQEIASEQSFEVTYVDIEEKSMTGLCQC 342
Query: 339 LLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+QL+T PV V G G + + A+ A AL++L+IM +
Sbjct: 343 LVQLSTLPVAVCHGAGLTSKDAQSSAAQNALEYLKIMTK 381
>gi|221328530|gb|ACM17808.1| TAR RNA-binding protein 2 isoform 3 [Fenneropenaeus chinensis]
Length = 296
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 172/333 (51%), Gaps = 65/333 (19%)
Query: 60 LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
++ ++ +E M +TPVSL+QEL RRG +PKY+L+QIEGA++EP F YR+++
Sbjct: 9 VDSSSSVEGMSGALPSKTPVSLLQELCMRRGISPKYDLLQIEGAVHEPTFVYRVTVGE-- 66
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP------------- 166
+ A GSG+SKK+AKH AAK+VLD +I P
Sbjct: 67 --FAANGSGQSKKKAKHAAAKAVLDIIIQGGAAGAGGPTSGGAPGAPPELSTQIVSPYDD 124
Query: 167 ----NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
NPVG LQE CM R+WPPP YE G PHER F++ + +E G GKSKK+AK
Sbjct: 125 GIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTREIGTGKSKKLAK 184
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF 282
R+AA M + L+ P+E P+ D D++ S
Sbjct: 185 RQAAYKMTQLLKDQPVEAPQVNVLADDDDETIS--------------------------- 217
Query: 283 SQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQL 342
LS NL + + L+D++ E + V++VDIEE S + Q L+QL
Sbjct: 218 ------------LSNVNL-----NFVQMLQDIAQEANFVVTYVDIEELSVSGQHQCLVQL 260
Query: 343 TTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+T PV V GTGA+++ A+ A + AL++L+IM
Sbjct: 261 STLPVAVCYGTGANVKEAQSAAAHNALEYLRIM 293
>gi|332271595|gb|AEE36483.1| TAR RNA-binding protein isoform 3 [Marsupenaeus japonicus]
Length = 296
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 172/333 (51%), Gaps = 65/333 (19%)
Query: 60 LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
++ ++ +E M +TPVSL+QEL RRG +PKY+L+QIEGA++EP F YR+++
Sbjct: 9 VDSSSNVEGMSGALPSKTPVSLLQELCMRRGISPKYDLLQIEGAVHEPTFVYRVTVGE-- 66
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP------------- 166
+ A GSG+SKK+AKH AAK+VLD +I P
Sbjct: 67 --FAANGSGQSKKKAKHAAAKAVLDIIIQGGAAGAGGPTSGGAPGAPPELSTQIVSPYDD 124
Query: 167 ----NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
NPVG LQE CM R+WPPP YE G PHER F++ + +E G GKSKK+AK
Sbjct: 125 GIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTREIGTGKSKKLAK 184
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF 282
R+AA M + L+ P+E P+ D D++ S
Sbjct: 185 RQAAYKMTQLLKDQPVEAPQVNVLADDDDETIS--------------------------- 217
Query: 283 SQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQL 342
LS NL + + L+D++ E + V++VDIEE S + Q L+QL
Sbjct: 218 ------------LSNVNL-----NFVQMLQDIAQEANFVVTYVDIEELSVSGQHQCLVQL 260
Query: 343 TTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+T PV V GTGA+++ A+ A + AL++L+IM
Sbjct: 261 STLPVAVCYGTGANVKEAQSAAAHNALEYLKIM 293
>gi|225714608|gb|ACO13150.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog [Lepeophtheirus salmonis]
Length = 334
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 185/336 (55%), Gaps = 37/336 (11%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
E ++N +TPVS +QEL R+G PKY+L+QIEGA++EP FKYR+++ +A G
Sbjct: 11 EARKVNLSGKTPVSFLQELYVRKGITPKYDLVQIEGAVHEPTFKYRVAVGD----VLATG 66
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRDDEK-------------LMCQKENLF--KVEPNPVGQ 171
SG+SKK+AKH+AAK+VLD+L + + C+ + + NPVG+
Sbjct: 67 SGQSKKKAKHSAAKAVLDKLCSAGEIRPDIIASLRTGEFGQNCRDYGDYDDGIPGNPVGE 126
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFT-VCAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE CM R+ PP YE G PHER F VC + Y+E G GKSKK+AKR+AA ML
Sbjct: 127 LQELCMNRRMQPPTYEVSREEGQPHERSFVLVCIVGSKYRESGNGKSKKLAKRQAAYKML 186
Query: 231 KFLETVPIEIPEKKQG-----EDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQK 285
L+ +P E + G +DE + G+ H + + LK+I + + F
Sbjct: 187 TKLKKIPAEHDDGSGGCNQGFHSLDEDELAQGIAHRNTT-------LKEISRNNYKFYSH 239
Query: 286 TKGPLLEKLLSTRNLIDEVED----PILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQ 341
+ P+L LS ED I LE +S E + V++VDIEE++ + L+Q
Sbjct: 240 IR-PILGSKLSIIQSECLEEDYYSFAIKNLEQISKEQDFSVTYVDIEERALNGEYHCLVQ 298
Query: 342 LTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
L+T PV V G G S + AK+ A + A ++L+I+ +
Sbjct: 299 LSTNPVAVCYGIGISDKDAKLNAAFHACEYLRILTK 334
>gi|85724940|ref|NP_001033903.1| loquacious, isoform C [Drosophila melanogaster]
gi|63376297|gb|AAY40789.1| loquacious [Drosophila melanogaster]
gi|84795302|gb|ABC65897.1| loquacious, isoform C [Drosophila melanogaster]
Length = 383
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 124/210 (59%), Gaps = 25/210 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 134 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 193
Query: 136 HNAAKSVLDQLIGR-------------------------DDEKLMCQKENLFKVEPNPVG 170
H AA++++D+LIG + + K NP+G
Sbjct: 194 HAAARALIDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKTVGNPIG 253
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE CM R+WPPP YETE GLPHER+FT+ + Y+E G GKSKKIAKR AA M
Sbjct: 254 WLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW 313
Query: 231 KFLETVPIEIPEKKQGEDVDEKGESNGLKH 260
L+ PI+ + + +GE+ +KH
Sbjct: 314 MRLQETPIDSGKISDSICGELEGENESVKH 343
>gi|320545024|ref|NP_001188796.1| loquacious, isoform D [Drosophila melanogaster]
gi|318068436|gb|ADV37046.1| loquacious, isoform D [Drosophila melanogaster]
Length = 359
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 115/189 (60%), Gaps = 25/189 (13%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 134 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 193
Query: 136 HNAAKSVLDQLIGR-------------------------DDEKLMCQKENLFKVEPNPVG 170
H AA++++D+LIG + + K NP+G
Sbjct: 194 HAAARALIDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKTVGNPIG 253
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE CM R+WPPP YETE GLPHER+FT+ + Y+E G GKSKKIAKR AA M
Sbjct: 254 WLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW 313
Query: 231 KFLETVPIE 239
L+ PI+
Sbjct: 314 MRLQETPID 322
>gi|443733452|gb|ELU17807.1| hypothetical protein CAPTEDRAFT_171815 [Capitella teleta]
Length = 364
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 173/337 (51%), Gaps = 41/337 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+S +QEL ++RG P+Y+LI EGA++EP F +++ + V G G SKK+AK
Sbjct: 32 KTPISYLQELCTKRGLTPQYDLIANEGAVHEPTFVFKVVVGD----IVGTGKGPSKKKAK 87
Query: 136 HNAAKSVLDQLIG------RDDEKLMCQKENLFKVEP---------------NPVGQLQE 174
HNAA SVL+QL G + K+ +EN +P NPVG+LQE
Sbjct: 88 HNAAVSVLNQLHGVQNSETEGENKVNGSEENGGSPDPKENGEELDGDESMVGNPVGELQE 147
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ WPPPVY+ G PH R F + E+G+G+SKK+AKR AA ML ++
Sbjct: 148 MTQKKLWPPPVYDYTSEQGPPHAREFICTVRLFQIAEQGVGRSKKLAKRNAAHAMLDIIK 207
Query: 235 TVPIEIPEKKQGEDVDEKGESN-------------GLKHTHDSTFLTPQILKKIQQYHTV 281
+ P + ++E E N LK L PQ ++I Q++
Sbjct: 208 KG-LATPTPDVTDHIEEHDEDNIPMPQSDVRSSYSNLKDGVKVATLNPQASQRISQFYQG 266
Query: 282 FSQKTKGPLLEKLLSTRNL-IDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLL 340
+T G L+ L T+ L + L+++++E ++ V++VDI+E S + Q L+
Sbjct: 267 MKART-GKNLQALQQTKALNTPGSTNYCQMLQEIAEEQRFEVTYVDIQEISVSGNHQCLV 325
Query: 341 QLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
QL+T PV V GT + + A A + AL +L+IM R
Sbjct: 326 QLSTMPVAVCHGTAPTRDEAHGMAAHNALQYLKIMTR 362
>gi|328705090|ref|XP_003242690.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A-like [Acyrthosiphon
pisum]
Length = 341
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 190/340 (55%), Gaps = 62/340 (18%)
Query: 75 DRTPVSLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
D+T V+L+Q++L+++G +YEL+QIEGA++ P F+YR++ + R +VA G GKSKKE
Sbjct: 13 DKTSVTLLQDVLNKQGVRTVQYELLQIEGAVSAPSFQYRVT---DGR-FVAYGQGKSKKE 68
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKV---------------------EPNPVGQL 172
AK NAAK++L ++I ++ +L + LF+ E NP+G L
Sbjct: 69 AKQNAAKALL-RIIHKEFPELC--SDPLFESQIDFTSDVNETFETMNFGDNDERNPIGML 125
Query: 173 QEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKF 232
QE C + PPPVY TE GLPH+R+FTV V+ YKE G+GKSKKIAKR AA N+
Sbjct: 126 QELCTSLHLPPPVYITECEDGLPHQRLFTVSCNVSEYKETGVGKSKKIAKRLAANNLYLM 185
Query: 233 LETVPIEIP-EKKQGEDVD-----EKGESNGLKHTHDST--FLTPQILKKIQQYHTVFSQ 284
L+++ ++ E+VD E +GLK++ ++ + P+I + +
Sbjct: 186 LKSIQADLSLNSGAAENVDDFVRQESSNLSGLKNSKSTSQFYRLPEIHRHL--------P 237
Query: 285 KTKGPLLEKLLSTRNLIDEVEDPILY-------LEDLSDELKYRVSFVDIEEKSKADGFQ 337
T+GP N + +++D LY L+ + E +VSF+D EE S +Q
Sbjct: 238 ITEGPCY-------NDLKKMDDEQLYSCNSKLILDSFTAEQGLKVSFIDFEELSSTGKYQ 290
Query: 338 SLLQLTTTPVTV-FCG-TGASIEVAKIEAVYRALDFLQIM 375
S LQ+ +TP+TV F G + S E A+ +A YR+L F +
Sbjct: 291 SSLQI-STPITVAFYGESTISYEEAQQDAAYRSLVFFNCI 329
>gi|291238580|ref|XP_002739212.1| PREDICTED: Probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Saccoglossus kowalevskii]
Length = 315
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 165/315 (52%), Gaps = 30/315 (9%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+S++QEL ++R P Y+LI EGA ++P F YR+++ + A G G SKK+AK
Sbjct: 9 KTPISILQELCTKRSLTPIYDLIACEGAAHQPKFVYRVTVGE----HTANGDGTSKKQAK 64
Query: 136 HNAAKSVLDQL-IGRDDEKLMCQKENLFKVEP------------NPVGQLQEACMTRKWP 182
HNAA++VL+Q + Q + E NPVGQLQE + R W
Sbjct: 65 HNAAENVLEQFNVSVPKPSTPSQDASNGSTEADGNSVYNDGIPGNPVGQLQELVVARHWR 124
Query: 183 PPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPE 242
P Y G PH R F + V+ ++E+G G+SKKIAKR AA ML+ ++ +P P+
Sbjct: 125 RPDYIQISECGPPHSREFIIACRVHSFQEQGKGRSKKIAKRAAAWAMLQRIQDLP---PD 181
Query: 243 KKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLID 302
+ G E G+ S + L H +K + +L S+ +
Sbjct: 182 AEIGPADYELDTGAGVP----SNISKSKSLTLWGSLHNPSGEK-----VTRLKSSSLSVP 232
Query: 303 EVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKI 362
+ L L++L++E + V ++ IEE S++ Q L+QL+TTPV V GTG +++ +
Sbjct: 233 DTNYCTL-LQELAEEQNFEVRYIPIEELSQSGQHQCLVQLSTTPVAVCHGTGQTVDDCRA 291
Query: 363 EAVYRALDFLQIMNR 377
EA + AL +L+IM R
Sbjct: 292 EAAHNALLYLKIMAR 306
>gi|391342131|ref|XP_003745376.1| PREDICTED: probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Metaseiulus occidentalis]
Length = 335
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 112/343 (32%), Positives = 174/343 (50%), Gaps = 85/343 (24%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+S++QE+ SR+ P+Y+LI +EGA++ P F YR+ + S A +G+SKK+AK
Sbjct: 35 KTPISVLQEVCSRKSLTPEYKLISVEGAVHAPTFVYRVEVGDVS----ATAAGQSKKKAK 90
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLF---------------------KVEP-------- 166
H AAK+++D+++ D LM K L K +P
Sbjct: 91 HCAAKALIDKIVDEDIGPLMFLKPLLLEGMVGMSDGLGPEKEPTTPVAKTDPLSPSTGPA 150
Query: 167 -----------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
NPVGQLQE CM ++W PP Y+T+ GLPHER F + VN Y E G G
Sbjct: 151 SDSGEDDGIPGNPVGQLQELCMKKRWRPPFYDTQMEEGLPHERTFGIMCIVNNYSEIGFG 210
Query: 216 KSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKI 275
KSK++AKR+AA NM++ +E + ++ SN ILK++
Sbjct: 211 KSKRLAKRQAAYNMIQMIERLQQQV--------------SN--------------ILKQL 242
Query: 276 QQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADG 335
+ + G L+ L +NL+ + + L ++++E ++ V+++ E DG
Sbjct: 243 --------KASNGARLQD-LQYKNLVTSGLNYVGLLREIAEEQRFEVTYIPAE---AVDG 290
Query: 336 FQS-LLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
S L LTT P+ V G G + E+AK+ A + AL +L+IM R
Sbjct: 291 CHSCLCHLTTLPLAVCFGIGETEELAKMNASHNALQYLKIMTR 333
>gi|313229252|emb|CBY23838.1| unnamed protein product [Oikopleura dioica]
Length = 343
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 154/325 (47%), Gaps = 55/325 (16%)
Query: 73 TGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRI---SLTSESRLYVAIGSGK 129
T TP+S++QEL + P+Y+L+ +EG ++P F +R LT E G G
Sbjct: 46 TSKATPISMLQELCQKLSKTPRYDLLTMEGRAHQPSFVFRCVVGDLTGE-------GHGT 98
Query: 130 SKKEAKHNAAKSVLDQL---IGRDDEKLMCQKENL-------FKVEPNPVGQLQEACMTR 179
SKK AKH AA++VL QL + +EKL + + L E NP+G LQE ++R
Sbjct: 99 SKKSAKHQAAENVLAQLKSGVVPGEEKLPIKGDELENDQSMIHAGEINPIGTLQELVVSR 158
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE 239
W P Y G H++ F +C V KE G G SKK+AKR AA ML + +P++
Sbjct: 159 GWRLPDYSLASEAGPSHKKEFIICCSVEKLKEYGSGSSKKVAKRNAAGAMLSRMREIPMD 218
Query: 240 IPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN 299
E H D+ + P FS +G + +LL N
Sbjct: 219 SKE-----------------HVLDTDDIDP----------LNFSSGRRGLVPLELLRNSN 251
Query: 300 --------LIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFC 351
+ + DPI+ L + S + ++ V+F+DI+E+S Q +LTT PV+V
Sbjct: 252 GERITIAKVNESALDPIMQLHEYSAQHQFSVAFLDIKERSTMGLVQCFARLTTMPVSVLN 311
Query: 352 GTGASIEVAKIEAVYRALDFLQIMN 376
G G ++ A A AL +L+IM
Sbjct: 312 GEGPTLAEAHNHAARNALQYLKIMG 336
>gi|313243028|emb|CBY39738.1| unnamed protein product [Oikopleura dioica]
Length = 324
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 154/325 (47%), Gaps = 55/325 (16%)
Query: 73 TGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRI---SLTSESRLYVAIGSGK 129
T TP+S++QEL + P+Y+L+ +EG ++P F +R LT E G G
Sbjct: 27 TSKATPISMLQELCQKLSKTPRYDLLTMEGRAHQPSFVFRCVVGDLTGE-------GHGT 79
Query: 130 SKKEAKHNAAKSVLDQL---IGRDDEKLMCQKENL-------FKVEPNPVGQLQEACMTR 179
SKK AKH AA++VL QL + +EKL + + L E NP+G LQE ++R
Sbjct: 80 SKKSAKHQAAENVLAQLKSGVVPGEEKLPIKGDELENDQSMIHAGEINPIGTLQELVVSR 139
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE 239
W P Y G H++ F +C V KE G G SKK+AKR AA ML + +P++
Sbjct: 140 GWRLPDYSLASEAGPSHKKEFIICCSVEKLKEYGSGSSKKVAKRNAAGAMLSRMREIPMD 199
Query: 240 IPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN 299
E H D+ + P FS +G + +LL N
Sbjct: 200 SKE-----------------HVLDTDDIDP----------LNFSSGRRGLVPLELLRNSN 232
Query: 300 --------LIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFC 351
+ + DPI+ L + S + ++ V+F+DI+E+S Q +LTT PV+V
Sbjct: 233 GERITIAKVNESALDPIMQLHEYSAQHQFSVAFLDIKERSTMGLVQCFARLTTMPVSVLN 292
Query: 352 GTGASIEVAKIEAVYRALDFLQIMN 376
G G ++ A A AL +L+IM
Sbjct: 293 GEGPTLAEAHNHAARNALQYLKIMG 317
>gi|427786703|gb|JAA58803.1| Putative staufen [Rhipicephalus pulchellus]
Length = 392
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 181/371 (48%), Gaps = 80/371 (21%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+S++QEL +R P+Y+L+ +EGA++ P F YR+ + VA +G+SKK+AK
Sbjct: 32 KTPISILQELCARNCLTPEYKLLSVEGAVHAPTFMYRVQVGE----VVANATGQSKKKAK 87
Query: 136 HNAAKSVLDQLIGRD------------DEKLMCQKENL----FKVEP------------- 166
H AA+++L++L+ D D M Q E + ++ P
Sbjct: 88 HAAARAILEKLLADDGPFAKYRAAVMEDLPSMEQTETVPTAVGEMAPSNNGLPGSTPLAG 147
Query: 167 ------------------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV 208
NPVG+LQE CM +W PP YET GLPHER F + VN
Sbjct: 148 TGSTGTPVAGAEDDGIVGNPVGELQELCMKLRWRPPFYETVIEDGLPHERTFGISCLVNN 207
Query: 209 YKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESN------------ 256
E G GKSK++AKR+AA M++ ++ V + GE+ D+ GES
Sbjct: 208 LNEMGKGKSKRLAKRQAAKKMIELIKNVQNGL---LNGEE-DKFGESGLNSVPGGLGPCS 263
Query: 257 ----------GLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVED 306
GLK + S LTP+ +++ Q Q + G L L T +L D
Sbjct: 264 TVLQEAKCYMGLKEQNISA-LTPRHSQQVGQLLRQL-QASDGARLTSLQGT-SLSTAGID 320
Query: 307 PILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVY 366
+ L +++DE + V++V I+E S Q L+QLT+ P+ V GT + E A++ A
Sbjct: 321 YVGLLREIADEQSFEVTYVPIDELSPDGKHQCLVQLTSLPLAVCFGTADTPEQAQVAAAR 380
Query: 367 RALDFLQIMNR 377
AL +L+IM +
Sbjct: 381 CALQYLKIMTK 391
>gi|375161472|gb|AFA41504.1| tar RNA binding protein-like protein [Laodelphax striatella]
Length = 339
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 126/212 (59%), Gaps = 10/212 (4%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE CM+R+WPPP Y+TE GLPHER FT+ V YKE G GKSKK+AKR+AA M
Sbjct: 131 LQELCMSRRWPPPSYDTEHEEGLPHERQFTIGCQVYKYKEIGTGKSKKLAKRQAANKMWF 190
Query: 232 FLETVPIEIPEKKQGEDVDEKGE--SNGLKHTHDS--TFLTPQILKKIQQYHTVFSQKTK 287
L+ +P+E + +D +E + SN D+ + L PQ K+ Q+H + K
Sbjct: 191 KLKDMPMENNMQFSFDDGEEMTQRVSNKFSDLKDAKISTLNPQTSLKVSQFH----KNLK 246
Query: 288 GPLLEKLLSTRNLIDEVE--DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTT 345
KL ++ + +V+ + + +L++++ E ++ V++VDIEEK+ Q L+QL+T
Sbjct: 247 SSFGIKLNDLQSAVLKVQTFNYVQFLQEIASEQQFEVTYVDIEEKTITGKCQCLVQLSTL 306
Query: 346 PVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
PV V G G + + A+ EA AL++L+IM +
Sbjct: 307 PVAVCHGQGGTSKEAQTEAALHALEYLKIMTK 338
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQEL-LSRRGTAPKYELIQIEGAINEPIFKYRISLT 116
+PL EAA +E+ L QEL +SRR P Y+ EG +E F ++
Sbjct: 118 MPLREAAMMEMKSL-----------QELCMSRRWPPPSYDTEHEEGLPHERQF----TIG 162
Query: 117 SESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146
+ Y IG+GKSKK AK AA + +L
Sbjct: 163 CQVYKYKEIGTGKSKKLAKRQAANKMWFKL 192
>gi|148234413|ref|NP_001079500.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Xenopus laevis]
gi|82176774|sp|Q7ZYA5.1|PRKAA_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A
gi|27696370|gb|AAH43873.1| Rbpa protein [Xenopus laevis]
Length = 309
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 160/338 (47%), Gaps = 55/338 (16%)
Query: 51 PKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFK 110
PK+S+ E+ L+ MR TP+ L+ E ++ G P Y L + EG + P F
Sbjct: 10 PKMSS-----EKPTSLDAMRATNPCETPIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFT 64
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF-------K 163
+R+ + ++G G SKK AK AA+ L+ L G D K + + L +
Sbjct: 65 FRLVIGD----ITSLGEGPSKKTAKQKAAEFALNILRG-DTSKCLPVTDTLRDPKKPPNQ 119
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
++ NPVG LQE + + W P Y + +G PH+R FT+ V + E G G SK++AKR
Sbjct: 120 MQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKR 179
Query: 224 EAALNMLKFLETVPIE-IP-----EKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQ 277
AA +L +T+ + IP K G D S+G K
Sbjct: 180 VAAEKLLTKFKTISTDNIPLNKLIGNKMGCTWDSMRNSSGEK------------------ 221
Query: 278 YHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQ 337
S + P LS N D + L+D+++EL + ++++DI+E S +Q
Sbjct: 222 ----ISMLKRSP-----LSIPN-----TDYVKMLKDVAEELDFNLTYLDIDELSVNGQYQ 267
Query: 338 SLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
L +L+T P+TV GTG S A +A + AL +L+IM
Sbjct: 268 CLAELSTNPITVCHGTGISCGNAHNDAAHNALQYLKIM 305
>gi|327282012|ref|XP_003225738.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Anolis carolinensis]
Length = 329
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 151/318 (47%), Gaps = 38/318 (11%)
Query: 64 ARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RLE + + +TP+ L+ E ++ P YE G ++ PIF Y+++L + +
Sbjct: 40 CRLEEIVASKPGKTPIQLLHEYGTKANLNPIYECENAAGEVHMPIFTYKVTLGNVT---- 95
Query: 124 AIGSGKSKKEAKHNAAKSVLDQLIGRD------DEKLMCQKENLFKVEPNPVGQLQEACM 177
G G SKK AKH AA++ L+ + G + L+ N + + NPVG LQE +
Sbjct: 96 GTGEGPSKKIAKHRAAEAALNIMKGNSVVCIAVPDHLIPGAVNQAQNKTNPVGSLQELAI 155
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
+ W P Y + TG PH+R FTV + + E GMG SKK+AKR AA +L+ +
Sbjct: 156 QKGWKLPEYSMAQETGPPHKREFTVTCRIEAFVETGMGTSKKLAKRNAAEKLLRKFQNF- 214
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLST 297
G+++ N L T D+ L +KI LL
Sbjct: 215 -------SGDNISLNLSRN-LGCTWDT--LRNSSREKI-----------------TLLKM 247
Query: 298 RNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASI 357
L D + L +++ E + +++DIEE S FQ L +L+T P+TV GTG S
Sbjct: 248 SPLSIPNTDYVHLLREIAQEQGFHATYLDIEELSVNGQFQCLAELSTHPITVCHGTGISW 307
Query: 358 EVAKIEAVYRALDFLQIM 375
A +A + AL +L+IM
Sbjct: 308 GNAHNDAAHNALQYLKIM 325
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 149 RDDEKLMCQKENLFKVEPN--PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV 206
R + C+ E + +P P+ L E T+ P+YE E G H +FT +
Sbjct: 33 RTKSLMWCRLEEIVASKPGKTPIQLLHEY-GTKANLNPIYECENAAGEVHMPIFTYKVTL 91
Query: 207 NVYKEEGMGKSKKIAKR---EAALNMLKFLETVPIEIPE 242
G G SKKIAK EAALN++K V I +P+
Sbjct: 92 GNVTGTGEGPSKKIAKHRAAEAALNIMKGNSVVCIAVPD 130
>gi|241779179|ref|XP_002399859.1| tar RNA-binding protein, putative [Ixodes scapularis]
gi|215508538|gb|EEC17992.1| tar RNA-binding protein, putative [Ixodes scapularis]
Length = 273
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 145/316 (45%), Gaps = 60/316 (18%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRI--SLTSESRLYVAIGSGKSKKE 133
+TP+S++QEL +R P+Y+L+ +EGA++ P F YR+ SR YV+ K+E
Sbjct: 3 KTPISILQELCARNCLTPEYKLLSVEGAVHAPTFMYRLLHRFIFVSR-YVS-----CKRE 56
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFK------------VEPNPVGQLQEACMTRKW 181
K AK+ + + + NPVG LQE CM +W
Sbjct: 57 NKCVCAKAATQDRLASNGGVPAATTPTTTPAAPGVPAVEEDGIPGNPVGALQELCMKLRW 116
Query: 182 PPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIP 241
PP YET GLPHER F + VN E G GKSK++AKR+AA M++ +E ++
Sbjct: 117 RPPFYETVIEEGLPHERTFGISCLVNNLSEMGKGKSKRLAKRQAAYKMIQLIENQVGQLL 176
Query: 242 EKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLI 301
+ QG D G G TP L+T L
Sbjct: 177 RQLQGSDGARLGSLQG----------TP-------------------------LNTAGL- 200
Query: 302 DEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAK 361
D + L +++DE + V++V I+E S Q L+QLT+ P+ V GT S E A+
Sbjct: 201 ----DYVGLLREIADEQSFEVTYVPIDELSTDGKHQCLVQLTSLPLAVCFGTAESPEQAR 256
Query: 362 IEAVYRALDFLQIMNR 377
A AL +L+IM +
Sbjct: 257 AAAARSALQYLKIMTK 272
>gi|3334381|sp|Q91836.1|PRKAB_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog B; AltName:
Full=Double-stranded RNA-binding protein A; AltName:
Full=XlRBPA
gi|214739|gb|AAA49947.1| RNA binding protein [Xenopus laevis]
Length = 298
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 153/328 (46%), Gaps = 50/328 (15%)
Query: 61 EEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESR 120
E+ L MR TP+ L+ E ++ G P Y L + EG + P F +R+ +
Sbjct: 4 EKPTSLNAMRATNPCETPIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFTFRLVIGD--- 60
Query: 121 LYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF-------KVEPNPVGQLQ 173
++G G SKK K AA+ L+ L G D K + + L +++ NPVG LQ
Sbjct: 61 -ITSLGEGPSKKTPKQKAAEFALNILRG-DTSKCLPVTDTLRDPKKPPNQMQENPVGSLQ 118
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
E + + W P Y + +G PH+R FT+ V + E G G SK++AKR AA +L
Sbjct: 119 ELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKF 178
Query: 234 ETVPIE-IP-----EKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTK 287
+T+ + IP K G D S+G K S +
Sbjct: 179 KTISTDNIPLNKLIGNKMGCTWDSMRNSSGEK----------------------ISMLKR 216
Query: 288 GPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPV 347
P LS N D + L+D+++EL + ++++DI+E S +Q L +L+T P+
Sbjct: 217 SP-----LSIPN-----TDYVKMLKDVAEELDFNLTYLDIDELSVNGQYQCLAELSTNPI 266
Query: 348 TVFCGTGASIEVAKIEAVYRALDFLQIM 375
TV GTG S A +A + AL +L+IM
Sbjct: 267 TVCHGTGISCGNAHNDAAHNALQYLKIM 294
>gi|395541537|ref|XP_003772699.1| PREDICTED: RISC-loading complex subunit TARBP2 [Sarcophilus
harrisii]
Length = 549
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 157/323 (48%), Gaps = 27/323 (8%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAI 125
+E M + +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S
Sbjct: 237 IEQMLAASPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CT 292
Query: 126 GSGKSKKEA---------KHNAAKSVLDQLI--GRDDEKLMCQKENLFKVEPNPVGQLQE 174
G G SKK A KH ++LD + GR + + + E NPVG LQE
Sbjct: 293 GQGPSKKAAKHKAAEVALKHLKGGNMLDPFLEDGRSPPVEVKAPVSPQQSECNPVGALQE 352
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ + W P Y + +G H + FT+ V + E G G SKK+AKR AA ML +
Sbjct: 353 LVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVH 412
Query: 235 TVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKL 294
TVP++ + + E D+ H S L ++ + + EK+
Sbjct: 413 TVPLDPRDGPEAEPDDD----------HFSIGLGSRVDGLRGRSPGCTWDSLRNSAGEKI 462
Query: 295 LSTRNLIDEVEDPIL--YLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCG 352
LS R+ P L +LS+E + VS++DI+E S + Q L++L+T P TV G
Sbjct: 463 LSLRSCPLGSLGPGCCNVLSELSEEQAFHVSYLDIDELSLSGLCQCLVELSTQPATVCHG 522
Query: 353 TGASIEVAKIEAVYRALDFLQIM 375
+ + E A+ EA AL +L+IM
Sbjct: 523 SAPTREAARGEAARHALQYLKIM 545
>gi|198415842|ref|XP_002129369.1| PREDICTED: similar to TAR (HIV) RNA binding protein 2 [Ciona
intestinalis]
Length = 326
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 140/320 (43%), Gaps = 61/320 (19%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS +QE + P+Y+L +EG ++P F YR + A G G SKK AK
Sbjct: 20 KTPVSTLQEYCQKLSKTPQYDLTALEGRAHQPQFVYRCMVGD----VTATGQGGSKKIAK 75
Query: 136 HNAAKSVLDQLI--------------------GRDDEKLMCQKENLFKVEPNPVGQLQEA 175
H AA++VL L GRD + + NPVG LQE
Sbjct: 76 HAAAEAVLKTLTNGLVEPESFPDVMETSAVEYGRDVD------------DTNPVGSLQEL 123
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
+ R W P Y TG H++ F +C V +KE G G +KK AKR AA NM +
Sbjct: 124 VVARGWRLPEYALAHETGPAHKKEFIICCTVESFKEYGSGSAKKHAKRLAAANMFTKIMN 183
Query: 236 VPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLL 295
+P E E + + K + GL +S + +K +H F+
Sbjct: 184 LPPEAKETVTNQSREAKNKI-GLNEICNS------VGEKQNFFHVRFANCD--------- 227
Query: 296 STRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGA 355
++P LE+L+++ + + DIE+ + Q LL+++T P V G G
Sbjct: 228 ---------QNPCQVLEELANKHSFDAVYKDIEQTTVNGDRQCLLEVSTQPPCVLHGRGK 278
Query: 356 SIEVAKIEAVYRALDFLQIM 375
S+ + +A AL++L I
Sbjct: 279 SLNQSHSDAAVNALEYLTIF 298
>gi|41053389|ref|NP_956291.1| RISC-loading complex subunit tarbp2 [Danio rerio]
gi|82240186|sp|Q7SXR1.1|TRBP2_DANRE RecName: Full=RISC-loading complex subunit tarbp2
gi|33311802|gb|AAH55390.1| TAR (HIV) RNA binding protein 2 [Danio rerio]
Length = 346
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 161/343 (46%), Gaps = 55/343 (16%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ + G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN----CTG 75
Query: 127 SG------------------KSKKEAKHNAAKSVLDQLIGRDDEKLMCQKE-----NLFK 163
G K D +G + E Q E + +
Sbjct: 76 HGPSKKAAKHKAAEAALKMLKGGMLGGIGGNGMEGDGFVGIEMEGECPQSEMKSSSSTQQ 135
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 136 AECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAKR 195
Query: 224 EAALNMLKFLETVPIEIPEKKQGEDVD-----------EKGESNGLKHTHDSTFLTPQIL 272
AA ML + VP+++ + E D E G+S GL T DS L
Sbjct: 196 NAAAKMLSRIHDVPVDMRSSHEAEAEDDTFNMQIGGRLEGGKSKGLGCTWDS--LRNSAG 253
Query: 273 KKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSK 332
+KI Q L L + ID + L +LS+E ++ VS++DIEE+S
Sbjct: 254 EKILQ------------LRCHPLGQSDSID--SNFCSLLRELSEEQRFGVSYLDIEERSL 299
Query: 333 ADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ +Q L++L+T P+TV G +S++ A+ A + AL +L+IM
Sbjct: 300 SGLYQCLVELSTQPITVCHGFASSLDAARASAAHNALQYLKIM 342
>gi|348528752|ref|XP_003451880.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Oreochromis
niloticus]
Length = 345
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 163/344 (47%), Gaps = 58/344 (16%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ S G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVSVGEIS----CTG 75
Query: 127 SGKSKKEAKHNAAKSV-----------------LDQLIGRDDEKLMCQKENLFKV----- 164
G SKK AKH AA++ +D IG D ++ K
Sbjct: 76 QGPSKKAAKHKAAEAALKMLKGGLGGPAGVGIGVDGFIGVDVSTDADGAQSEMKTTGTSQ 135
Query: 165 --EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AK
Sbjct: 136 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAK 195
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVD-----------EKGESNGLKHTHDSTFLTPQI 271
R AA ML + VP+++ + D E G+S G T DS L
Sbjct: 196 RNAAAKMLSRIHDVPVDMRTSNDADAEDDTFTMNMGSRAESGKSKGFSCTWDS--LRNSA 253
Query: 272 LKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKS 331
+KI Q + PL + S N L +LS E ++ VS++D+EE+S
Sbjct: 254 GEKILQLRSH-------PL--GMPSDSNFCS-------LLSELSLEQRFDVSYLDLEERS 297
Query: 332 KADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ Q L++L+T P+TV G + + A+ A + AL +L+IM
Sbjct: 298 LSGLCQCLVELSTQPITVCHGFAPNTDGARANAAHNALQYLKIM 341
>gi|229891681|sp|B6P4U0.1|TRBP2_BRAFL RecName: Full=Probable RISC-loading complex subunit
BRAFLDRAFT_242885
Length = 319
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 162/331 (48%), Gaps = 47/331 (14%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+SL+QEL + G +Y+LI EGA ++ F +R+++ VA G+G SKK AK
Sbjct: 5 KTPISLLQELSTHMGKTAQYDLIATEGAAHQQTFVFRVTVGE----VVATGAGLSKKAAK 60
Query: 136 HNAAKSVLDQLIGR--------------------DDEKLMC--------QKENLFKVEPN 167
H AA+S L+ + G+ D C + + N
Sbjct: 61 HKAAESALNIIQGKVTPEEANNMRYFFYNIMHIFDLCIFYCPIPPSTYSESGGVLTPPDN 120
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
P+GQLQE + R W P Y G PH + FT+ V +K+ G G SKK AKR AA
Sbjct: 121 PIGQLQELVVERGWRLPEYIVISEQGPPHCKEFTIQVKVEKFKDTGTGSSKKAAKRSAAG 180
Query: 228 NMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTF-LTPQILKKIQQYHTVFSQKT 286
+L L +P + + + D+DE +S G+K H + +T L+ +
Sbjct: 181 VLLTRLREIPPDQQDMVRDADIDE--DSTGVKPMHAARIGITWATLR-----------NS 227
Query: 287 KGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTP 346
G + +L ST +L + L++L++E + V ++DIEE S + Q L+QLTT P
Sbjct: 228 AGEKITRLKST-SLSTPNSNYCQLLQELAEEQNFEVEYLDIEELSASSLHQCLVQLTTQP 286
Query: 347 VTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
VTV G G + + A A + AL +L++M R
Sbjct: 287 VTVCHGQGHTRDEAHAHAAHNALQYLKLMVR 317
>gi|327263959|ref|XP_003216784.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Anolis
carolinensis]
Length = 383
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 161/324 (49%), Gaps = 28/324 (8%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAI 125
+E M + +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S
Sbjct: 70 IEQMLASNPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDIS----CT 125
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRD-------DEKLMCQKENLFKVEP-----NPVGQLQ 173
G G SKK AKH AA+ L L G + +E E V P NPVG LQ
Sbjct: 126 GQGPSKKAAKHKAAEVALRLLKGGNMLEPAAMEETRSSPMELKSPVSPQQSECNPVGALQ 185
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
E + + W P Y + +G H + FT+ V + E G G SKK+AKR AA ML +
Sbjct: 186 ELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLVRI 245
Query: 234 ETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEK 293
VP++ E + E V+E S + D +K T S + EK
Sbjct: 246 HNVPLDPREGSEAE-VEEDQFSITAGNKMDG-------VKGRGSGCTWDSLRNSAG--EK 295
Query: 294 LLSTRNLIDEVEDPIL--YLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFC 351
+L ++ V + LE+LS+E + +S++DI+E S + +Q L++L+T P TV
Sbjct: 296 ILHLKSNPLGVLNAGFCSLLEELSEEQSFDISYLDIDEMSLSGLYQCLVELSTQPTTVCH 355
Query: 352 GTGASIEVAKIEAVYRALDFLQIM 375
G+ S A+++A AL +L+IM
Sbjct: 356 GSATSRHAARVDAARNALQYLKIM 379
>gi|166295185|ref|NP_033345.2| RISC-loading complex subunit TARBP2 isoform 1 [Mus musculus]
gi|342187071|sp|P97473.2|TRBP2_MOUSE RecName: Full=RISC-loading complex subunit TARBP2; AltName:
Full=Protamine-1 RNA-binding protein; Short=PRM-1
RNA-binding protein; AltName: Full=TAR RNA-binding
protein 2
gi|12805141|gb|AAH02028.1| TAR (HIV) RNA binding protein 2 [Mus musculus]
gi|148672020|gb|EDL03967.1| TAR (HIV) RNA binding protein 2, isoform CRA_a [Mus musculus]
Length = 365
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 163/356 (45%), Gaps = 62/356 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLD--------------------------------- 144
G SKK A KH S+L+
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSLLDSSPPEDTPVVAAEAAAPVPS 135
Query: 145 QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
++ R M + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 AVLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTC 195
Query: 205 YVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS 264
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H S
Sbjct: 196 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HFS 245
Query: 265 TFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDELK 319
++ ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 IGVSSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSVGSLGALGSACCSVLSELSEEQA 305
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ +A +RAL +L+IM
Sbjct: 306 FHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAARGDAAHRALQYLRIM 361
>gi|317418804|emb|CBN80842.1| RISC-loading complex subunit tarbp2 [Dicentrarchus labrax]
Length = 345
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 163/344 (47%), Gaps = 58/344 (16%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ S G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVSVGEIS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLI------------------------GRDDEKLMCQKENLF 162
G SKK AKH AA++ L L G + M +
Sbjct: 76 QGPSKKAAKHKAAEAALKMLKGGLGGPAGVGVGVDGFIGVDVSTDGDGSQSEMKTSGSSQ 135
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
+ E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AK
Sbjct: 136 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAK 195
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVD-----------EKGESNGLKHTHDSTFLTPQI 271
R AA ML + VP+++ + D E G+S G T DS L
Sbjct: 196 RNAAAKMLSRIHDVPVDLRTSNDADTEDDTFNMHMGSRAESGKSKGFSCTWDS--LRNSA 253
Query: 272 LKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKS 331
+KI Q + PL + S N L DLS E ++ VS++D+EE+S
Sbjct: 254 GEKILQLRS-------HPL--GMPSDSNFCS-------LLSDLSVEQRFDVSYLDLEERS 297
Query: 332 KADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ Q L++L+T P+TV G SI+ A+ A + AL +L+IM
Sbjct: 298 LSGLCQCLVELSTQPITVCHGFAPSIDAARANAAHNALQYLKIM 341
>gi|410964557|ref|XP_003988820.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Felis
catus]
Length = 366
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 161/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLD-------------------------QLIGRDDE 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAVAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVPTRSPPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFVEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPI-----LYLEDLSDEL 318
S + ++ + + + EK+LS R+ + L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGALGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSAATREAARGEAACRALQYLKIM 362
>gi|410964559|ref|XP_003988821.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Felis
catus]
gi|410964561|ref|XP_003988822.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Felis
catus]
Length = 345
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 160/356 (44%), Gaps = 63/356 (17%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 1 MLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQ 55
Query: 128 GKSKKEA---------KHNAAKSVLD-------------------------QLIGRDDEK 153
G SKK A KH S+L+ +
Sbjct: 56 GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAVAATPVPS 115
Query: 154 LMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
+ + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 116 AVPTRSPPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC 175
Query: 205 YVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS 264
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H S
Sbjct: 176 RVERFVEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HFS 225
Query: 265 TFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPI-----LYLEDLSDELK 319
+ ++ + + + EK+LS R+ + L +LS+E
Sbjct: 226 IGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGALGALGPACCSVLSELSEEQA 285
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 286 FHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSAATREAARGEAACRALQYLKIM 341
>gi|432857632|ref|XP_004068726.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Oryzias
latipes]
Length = 345
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 160/347 (46%), Gaps = 64/347 (18%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ S G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVSVGEIS----CTG 75
Query: 127 SGKSK---------------KEAKHNAAKSVL--DQLIGRD---DEKL----MCQKENLF 162
G SK K + A V+ D+ +G D DE M
Sbjct: 76 QGPSKKAAKHKAAEAALKMLKGSLEGPAGVVVGVDEFVGVDVLVDEDGPQSEMKTTNTSQ 135
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
+ E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AK
Sbjct: 136 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAK 195
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVD--------------EKGESNGLKHTHDSTFLT 268
R AA ML + VP+++ + D D E G++ G T DS
Sbjct: 196 RNAAAKMLSRIHDVPVDL---RSTNDADTEEDTFNMHMGGRVESGKAKGFSCTWDSL--- 249
Query: 269 PQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIE 328
+ + G + +L S + + L DLS E ++ VS++D+E
Sbjct: 250 ---------------RNSAGEKILQLRSHPLGMPSDSNSCALLSDLSAEQRFDVSYLDLE 294
Query: 329 EKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
E+S + Q L++L+T P+TV G + + A+ A + AL +L+IM
Sbjct: 295 ERSLSGLCQCLVELSTQPITVCHGFATNTDAARANAAHNALQYLKIM 341
>gi|229891738|sp|Q5BJ52.2|TRBP2_XENTR RecName: Full=RISC-loading complex subunit tarbp2
Length = 351
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 165/348 (47%), Gaps = 56/348 (16%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAI 125
+E M ++ +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ +
Sbjct: 18 IEQMLASSPGKTPISLLQEYGTRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN----CT 73
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF----------------------- 162
G G SKK AKH AA+ L L G D +MC++ ++
Sbjct: 74 GQGPSKKAAKHKAAEVALSLLKGGDMFGMMCEENSVMLSVEQPVELREVADVSPPPTNRN 133
Query: 163 ------------KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK 210
+ E NPVG LQE + + W P Y + +G H + FT+ V +
Sbjct: 134 HTIEMKPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFL 193
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD-STFLTP 269
E G G SKK+AKR AA ML + VP E E + E +++ L + T T
Sbjct: 194 EIGSGTSKKLAKRNAAAKMLLQIHRVPAEHRESGETEPEEDQFSMGKLDGSRGRGTACTW 253
Query: 270 QILKKIQQYHTVFSQKTKGPLLEKLLSTRN--LIDEVEDPILYLEDLSDELKYRVSFVDI 327
L+ + G EK+L R+ L L+DLS+E +++S++DI
Sbjct: 254 DSLR-----------NSSG---EKILHLRSNPLTILSSGFCSLLQDLSEEQSFQISYLDI 299
Query: 328 EEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+E S + +Q L++L+T P TV G+ + + A+ A + AL +L+IM
Sbjct: 300 DEPSLSGLYQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIM 347
>gi|395835025|ref|XP_003790485.1| PREDICTED: RISC-loading complex subunit TARBP2 [Otolemur garnettii]
Length = 366
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 165/363 (45%), Gaps = 75/363 (20%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLD--------------------------------- 144
G SKK A KH S+L+
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSQPEDVPVFTAAAAATPVP 135
Query: 145 -QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ R+ M + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVLTRNPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D+ +G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDDHFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLE 312
L++ T DS L + +KI+ + S + G L S L
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKIRSLRSC-SLGSLGALGPSCCSV-------------LS 299
Query: 313 DLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L
Sbjct: 300 ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREEARGEAARRALQYL 359
Query: 373 QIM 375
+IM
Sbjct: 360 KIM 362
>gi|1737216|gb|AAB38885.1| protamine-1 RNA binding protein [Mus musculus]
Length = 365
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 162/356 (45%), Gaps = 62/356 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKEEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLD--------------------------------- 144
+G SKK A KH S+L+
Sbjct: 76 TGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSLSLLDSSPPEDTPVVAAEAAAPVPS 135
Query: 145 QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
++ R M + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 AVLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTC 195
Query: 205 YVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS 264
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H S
Sbjct: 196 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HFS 245
Query: 265 TFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDELK 319
++ ++ + + EK+LS R+ + + L +LS+E
Sbjct: 246 IGVSSRLDGLRNHGPGCTWDSLRNSVGEKILSLRSCSVGSLGALGSACCSVLSELSEEQA 305
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P V G+ + E A+ +A +RAL +L+IM
Sbjct: 306 FHVSYLDIEELSLSGLCQCLVELSTQPAAVCYGSATTREAARGDAAHRALQYLRIM 361
>gi|334329987|ref|XP_001377363.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Monodelphis domestica]
Length = 313
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 144/321 (44%), Gaps = 43/321 (13%)
Query: 65 RLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
RL M +TP+ ++ E + P YE + +G N P F +R+++ +
Sbjct: 22 RLGKMITAKPGKTPIQVLHEYGMKTNNVPVYEFERADGHANTPSFTFRVTIGD----IIC 77
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------NPVGQLQEAC 176
G G SKK AKH AA++ + L + + L + +P NP+G LQE
Sbjct: 78 TGEGSSKKMAKHKAAEAAIGHL--KANASLCFAVPDPTAPDPSKQPKNQANPIGSLQELA 135
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLET 235
+ W P Y + G H++ FT + + E G G SKK AKR AA L KF E
Sbjct: 136 IQHGWRLPEYTLSQEGGPAHKKEFTTICRLESFIETGKGASKKQAKRNAAEKFLAKFREF 195
Query: 236 VPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEK-L 294
P + +N L T T+ + L+ S K LL + L
Sbjct: 196 SPD-----------NNVSLANALGSTIGCTWNS---LRN--------SNGEKITLLRRSL 233
Query: 295 LSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTG 354
LS N D + L ++ E + V+++DIEE S +Q L +L+T+PVTV G+G
Sbjct: 234 LSIPNT-----DYVQMLGEIGKEQGFEVTYLDIEELSVNGQYQCLAELSTSPVTVCHGSG 288
Query: 355 ASIEVAKIEAVYRALDFLQIM 375
S A +A + AL +L+IM
Sbjct: 289 ISCGSAHSDAAHNALQYLKIM 309
>gi|71895927|ref|NP_001025646.1| RISC-loading complex subunit tarbp2 [Xenopus (Silurana) tropicalis]
gi|60550973|gb|AAH91619.1| TAR (HIV-1) RNA binding protein 2 [Xenopus (Silurana) tropicalis]
Length = 331
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 163/345 (47%), Gaps = 56/345 (16%)
Query: 69 MRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
M ++ +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ + G G
Sbjct: 1 MLASSPGKTPISLLQEYGTRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN----CTGQG 56
Query: 129 KSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF-------------------------- 162
SKK AKH AA+ L L G D +MC++ ++
Sbjct: 57 PSKKAAKHKAAEVALSLLKGGDMFGMMCEENSVMLSVEQPVELREVADVSPPPTNRNHTI 116
Query: 163 ---------KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEG 213
+ E NPVG LQE + + W P Y + +G H + FT+ V + E G
Sbjct: 117 EMKPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFLEIG 176
Query: 214 MGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD-STFLTPQIL 272
G SKK+AKR AA ML + VP E E + E +++ L + T T L
Sbjct: 177 SGTSKKLAKRNAAAKMLLQIHRVPAEHRESGETEPEEDQFSMGKLDGSRGRGTACTWDSL 236
Query: 273 KKIQQYHTVFSQKTKGPLLEKLLSTRN--LIDEVEDPILYLEDLSDELKYRVSFVDIEEK 330
+ + G EK+L R+ L L+DLS+E +++S++DI+E
Sbjct: 237 R-----------NSSG---EKILHLRSNPLTILSSGFCSLLQDLSEEQSFQISYLDIDEP 282
Query: 331 SKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
S + +Q L++L+T P TV G+ + + A+ A + AL +L+IM
Sbjct: 283 SLSGLYQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIM 327
>gi|348581071|ref|XP_003476301.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Cavia
porcellus]
Length = 366
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 53/352 (15%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQ-------------------------------- 145
G SKK A KH S+L+
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLESALEDSSSFSPPDSSLPEDAPVFTTVAIAAPVP 135
Query: 146 --LIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ R M + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 LAVLTRSSPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGTEAEPDDDHFSIGVGSHLDG 255
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVS 323
P + ++ + + + L + S +L L +LS+E + VS
Sbjct: 256 LRSRGPGC-----TWDSLRNSEGEKILYLRSCSPGSLGALGSGCCSVLSELSEEQAFHVS 310
Query: 324 FVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 311 YLDIEELSVSGLCQCLVELSTQPATVCHGSATTREEARGEAARRALQYLKIM 362
>gi|82268346|sp|Q4SS66.1|TRBP2_TETNG RecName: Full=RISC-loading complex subunit tarbp2
gi|47222849|emb|CAF96516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 345
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 159/347 (45%), Gaps = 64/347 (18%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ + G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVAVGEIN----CTG 75
Query: 127 SGKS----------------KKEAKHNAAKSV-LDQLI-------GRDDEKLMCQKENLF 162
G S K A SV +D + G + M N
Sbjct: 76 QGPSKKAAKHKAAEAALKMLKGGLGAPAGFSVGVDGFVEVDVSTDGDSSQSEMKTSGNSQ 135
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
+ E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AK
Sbjct: 136 QTECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAK 195
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVD--------------EKGESNGLKHTHDSTFLT 268
R AA ML + VP+++ + D D E G+S T DS L
Sbjct: 196 RNAAAKMLSRIHDVPVDL---RTSNDADPEEDTFNMHMGSRTESGKSKSFSCTWDS--LR 250
Query: 269 PQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIE 328
+KI Q + PL + + N L DLS E ++ VS++D+E
Sbjct: 251 NSAGEKILQLRSH-------PL--GIPTDSNFCS-------LLSDLSLEQRFDVSYLDLE 294
Query: 329 EKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
E+S + Q L++L+T P+TV G +S + A+ A + AL +L+IM
Sbjct: 295 ERSLSGLCQCLVELSTQPITVCHGCASSTDAARASAAHNALQYLKIM 341
>gi|328713081|ref|XP_003244986.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like isoform 4 [Acyrthosiphon
pisum]
Length = 443
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 163/332 (49%), Gaps = 53/332 (15%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++P++ + E++ + +Y LI I G ++ P+F++ + +Y A G G SKKEAK
Sbjct: 131 KSPIAKLNEIMLLKKQVVEYGLISITGHVHNPVFRF---VAVNDGIY-AYGDGLSKKEAK 186
Query: 136 HNAAKSVLDQLIGRDD-------------------EKLMCQKENLFK--VEPNPVGQLQE 174
NAA ++LD+L DD L KEN+ + NP+G LQE
Sbjct: 187 KNAAIALLDKL---DDINGNNTITSTTSNISPSNVSPLKYSKENVLDEISKVNPIGVLQE 243
Query: 175 ACMTRKWPPPVYE-TEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
CM R+W P Y+ ++ H ++V + K G GK+K+ AKR+AA M +
Sbjct: 244 LCMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLKSVGEGKTKQAAKRQAAHIMYDLI 303
Query: 234 ETVPIEIPEK----------KQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFS 283
+ +P + K K +D+ E + N + + LK ++ +
Sbjct: 304 KNIPQQSISKAREYVYPTPRKMMQDMMESKDFNCINN-----------LKSLEIFLNRL- 351
Query: 284 QKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLT 343
+ ++ P L KL +T + ++ ++ I +LE + +E + ++++ + KS + ++QL
Sbjct: 352 KSSQNPSLNKLRNTDSTVEIRKNAIKFLETIGEEEHFCITYLLMSNKSF--DIEIVVQLA 409
Query: 344 TTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
TP+ +F G+G + E AK A Y AL +L+++
Sbjct: 410 VTPLLLFIGSGRTTEDAKEMAAYVALTYLKLL 441
>gi|351706145|gb|EHB09064.1| RISC-loading complex subunit TARBP2 [Heterocephalus glaber]
Length = 366
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 160/357 (44%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD--------------DEKLMCQKENLF---------- 162
G SKK AKH AA+ L L G + + + +F
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPPDSSLLEDAPVFTTVAVAAPVP 135
Query: 163 -------------------KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVLTRCPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN-----LIDEVEDPILYLEDLSDEL 318
S + ++ + + EK+L RN L L +LS+E
Sbjct: 246 SIGVGSRLDGLRSRGPGCTWDSLRNSEGEKILHLRNCSPGSLGALGSTSCSMLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSMSGLCQCLVELSTQPATVCHGSATTREEARGEAARRALQYLKIM 362
>gi|328713075|ref|XP_001942593.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like isoform 1 [Acyrthosiphon
pisum]
gi|328713077|ref|XP_003244984.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like isoform 2 [Acyrthosiphon
pisum]
gi|328713079|ref|XP_003244985.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like isoform 3 [Acyrthosiphon
pisum]
Length = 427
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 163/332 (49%), Gaps = 53/332 (15%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++P++ + E++ + +Y LI I G ++ P+F++ + +Y A G G SKKEAK
Sbjct: 115 KSPIAKLNEIMLLKKQVVEYGLISITGHVHNPVFRF---VAVNDGIY-AYGDGLSKKEAK 170
Query: 136 HNAAKSVLDQLIGRDD-------------------EKLMCQKENLFK--VEPNPVGQLQE 174
NAA ++LD+L DD L KEN+ + NP+G LQE
Sbjct: 171 KNAAIALLDKL---DDINGNNTITSTTSNISPSNVSPLKYSKENVLDEISKVNPIGVLQE 227
Query: 175 ACMTRKWPPPVYE-TEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
CM R+W P Y+ ++ H ++V + K G GK+K+ AKR+AA M +
Sbjct: 228 LCMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLKSVGEGKTKQAAKRQAAHIMYDLI 287
Query: 234 ETVPIEIPEK----------KQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFS 283
+ +P + K K +D+ E + N + + LK ++ +
Sbjct: 288 KNIPQQSISKAREYVYPTPRKMMQDMMESKDFNCINN-----------LKSLEIFLNRL- 335
Query: 284 QKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLT 343
+ ++ P L KL +T + ++ ++ I +LE + +E + ++++ + KS + ++QL
Sbjct: 336 KSSQNPSLNKLRNTDSTVEIRKNAIKFLETIGEEEHFCITYLLMSNKSF--DIEIVVQLA 393
Query: 344 TTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
TP+ +F G+G + E AK A Y AL +L+++
Sbjct: 394 VTPLLLFIGSGRTTEDAKEMAAYVALTYLKLL 425
>gi|395519855|ref|XP_003764057.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Sarcophilus harrisii]
Length = 288
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 140/311 (45%), Gaps = 45/311 (14%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + +G N P F +++++ G G SKK AK
Sbjct: 8 KTPIQVLHEYGMKTNNVPVYEFERADGHANTPSFTFKVTVGD----ITCSGEGSSKKMAK 63
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMTRKWPPPVYE 187
H AA++ + L + + L + +P NP+G LQE + W P Y
Sbjct: 64 HKAAEAAIGHL--KANASLCFAVPDPMAPDPSKQPKNQANPIGSLQELAIQHGWRLPEYT 121
Query: 188 TEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVPIEIPEKKQG 246
+ G H++ FT + + E G G SKK AKR AA L KF E P
Sbjct: 122 LSQEGGPAHKKEFTTICRLESFIETGKGASKKQAKRNAAEKFLAKFREFSPD-------- 173
Query: 247 EDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLS-TRNLID-EV 304
+ +N L T T+ T + + G EK+ S RNL+
Sbjct: 174 ---NNVSLANALGSTIGCTWNT--------------LRNSNG---EKITSLRRNLLSIPN 213
Query: 305 EDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEA 364
D I L ++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A +A
Sbjct: 214 TDYIQMLGEIGKEQGFEITYLDIEELSVNGQYQCLAELSTSPITVCHGSGVSCGSAHSDA 273
Query: 365 VYRALDFLQIM 375
+ AL +L+IM
Sbjct: 274 AHNALQYLKIM 284
>gi|417398798|gb|JAA46432.1| Putative interferon-inducible double stranded rna-dependent protein
kinase activator a [Desmodus rotundus]
Length = 313
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNVPVYECERSDMQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAE---KFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTF--LTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDP 307
+ +N + H+ T+ L +KI Q L LLS N D
Sbjct: 199 NHISLTNVVGHSLGCTWHSLRNSPGEKINQ------------LKRSLLSIPNT-----DY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|351699987|gb|EHB02906.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A, partial [Heterocephalus glaber]
Length = 296
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 16 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 71
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 72 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 131
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 132 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSKISPE------- 181
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 182 NHISLTNMVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 224
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 225 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISFSTAQNDAAHN 284
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 285 ALQYLKII 292
>gi|114052769|ref|NP_001039335.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Bos taurus]
gi|426220790|ref|XP_004004595.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Ovis aries]
gi|122135712|sp|Q2HJ92.1|PRKRA_BOVIN RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=Protein
activator of the interferon-induced protein kinase;
AltName: Full=Protein kinase, interferon-inducible
double stranded RNA-dependent activator
gi|87578189|gb|AAI13247.1| Protein kinase, interferon-inducible double stranded RNA dependent
activator [Bos taurus]
gi|296490704|tpg|DAA32817.1| TPA: interferon-inducible double stranded RNA-dependent protein
kinase activator A [Bos taurus]
gi|440895619|gb|ELR47763.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Bos grunniens mutus]
Length = 313
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNMVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCSSAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|291391824|ref|XP_002712359.1| PREDICTED: protein kinase, interferon-inducible double stranded RNA
dependent activator [Oryctolagus cuniculus]
Length = 314
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 141/308 (45%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I P F +R+++ G G SKK AK
Sbjct: 34 KTPIQVLHEYGMKTKNIPVYECERSDVQIRVPTFTFRVTVGD----ITCTGEGTSKKLAK 89
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 90 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 149
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA L + E
Sbjct: 150 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPE---------- 199
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 200 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSLPN-----TDY 242
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L D++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 243 IQLLSDIAKEQGFNITYLDIEELSANGHYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 302
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 303 ALQYLKII 310
>gi|395837199|ref|XP_003791528.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Otolemur
garnettii]
Length = 288
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 8 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 63
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 64 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 123
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 124 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 173
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 174 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 216
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L ++++E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 217 IQLLSEIAEEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 276
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 277 ALQYLKII 284
>gi|395837197|ref|XP_003791527.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Otolemur
garnettii]
Length = 313
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 143/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA L + E
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPE---------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPNT-----DY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L ++++E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAEEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|229891737|sp|Q6GPZ1.2|TRBP2_XENLA RecName: Full=RISC-loading complex subunit tarbp2
Length = 351
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 163/355 (45%), Gaps = 70/355 (19%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAI 125
+E M ++ +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+
Sbjct: 18 IEQMLASSPGKTPISLLQEYGTRVGKTPVYDLLKAEGQAHQPNFTFRVSVGD----INCT 73
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF----------------------- 162
G G SKK AKH AA+ L L + +MC++ ++
Sbjct: 74 GQGPSKKAAKHKAAEVALSLLKEGEMFGVMCEENSVVLSVEQPAELKEVADVSPPPTTRN 133
Query: 163 ------------KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK 210
+ E NPVG LQE + + W P Y + +G H + FT+ V +
Sbjct: 134 HTIEMKPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFL 193
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK--------GESNGLKHTH 262
E G G SKK+AKR AA ML + VP E E + E +++ S G T
Sbjct: 194 EIGSGTSKKLAKRNAAAKMLLQIHQVPAEHRESGETEPEEDQFSVGKLDGSRSRGTACTW 253
Query: 263 DSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN--LIDEVEDPILYLEDLSDELKY 320
DS + + G EK+L R+ L L+DLS+E +
Sbjct: 254 DSL------------------RNSSG---EKILHLRSNPLTILSSGFCSLLQDLSEEQSF 292
Query: 321 RVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++S++DI+E+S + Q L++L+T P TV G+ + + A+ A + AL +L+IM
Sbjct: 293 QISYLDIDERSLSGLCQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIM 347
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 30 VKVEENSPSRVLFDNNEIKQIPKVS----TNNLPLEEAARLEVMRLNTGDRTPVSLMQEL 85
V EENS + E+K++ VS T N +E L + + PV +QEL
Sbjct: 102 VMCEENSVVLSVEQPAELKEVADVSPPPTTRNHTIEMKPPLSAQQ---SECNPVGALQEL 158
Query: 86 LSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD 144
+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK NAA +L
Sbjct: 159 VVQKGWRLPEYTVTQESG----PAHRKEFTMTCRVERFLEIGSGTSKKLAKRNAAAKMLL 214
Query: 145 QL 146
Q+
Sbjct: 215 QI 216
>gi|348585626|ref|XP_003478572.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Cavia porcellus]
Length = 313
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|426337866|ref|XP_004032915.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Gorilla gorilla
gorilla]
Length = 288
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 8 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 63
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 64 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 123
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 124 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAE---KFLAKFSNISPE------- 173
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + HT T +H++ S K LL++ LLS N D
Sbjct: 174 NHISLTNVVGHTLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 216
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 217 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 276
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 277 ALQYLKII 284
>gi|338715834|ref|XP_001497407.3| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Equus caballus]
gi|390464340|ref|XP_002749315.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Callithrix jacchus]
gi|403258656|ref|XP_003921869.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Saimiri
boliviensis boliviensis]
gi|410968934|ref|XP_003990954.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Felis catus]
gi|431894951|gb|ELK04744.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Pteropus alecto]
Length = 288
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 8 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 63
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 64 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 123
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 124 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 173
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 174 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 216
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 217 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 276
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 277 ALQYLKII 284
>gi|410920129|ref|XP_003973536.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Takifugu
rubripes]
Length = 345
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 157/344 (45%), Gaps = 58/344 (16%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ + G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVAVGEIN----CTG 75
Query: 127 SGKS----------------KKEAKHNAAKSV-LDQLI-------GRDDEKLMCQKENLF 162
G S K A SV D + G + M +
Sbjct: 76 QGPSKKAAKHKAAEAALKMLKGGLGGPAGFSVGADGFVEVDVSTDGDSSQSEMKTSGSSQ 135
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
+ E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AK
Sbjct: 136 QTECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAK 195
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVD-----------EKGESNGLKHTHDSTFLTPQI 271
R AA ML + VP+++ E D E G+S T DS L
Sbjct: 196 RNAAAKMLSRIHDVPVDLRTSNDAEAEDDTFNMHTGSRAESGKSKSFSCTWDS--LRNSA 253
Query: 272 LKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKS 331
+KI Q + PL + + N L DLS E ++ VS++D+EE+S
Sbjct: 254 GEKILQLRSH-------PL--GIPTDSNFCS-------LLSDLSLEQRFDVSYLDLEERS 297
Query: 332 KADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ Q L++L+T P+TV G +S + A+ A + AL +L+IM
Sbjct: 298 LSGLCQCLVELSTQPITVCHGCASSADAARASAAHNALQYLKIM 341
>gi|67078460|ref|NP_001019951.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Rattus norvegicus]
gi|81908679|sp|Q4V8C7.1|PRKRA_RAT RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=Protein
activator of the interferon-induced protein kinase;
AltName: Full=Protein kinase, interferon-inducible
double stranded RNA-dependent activator
gi|66910624|gb|AAH97446.1| Protein kinase, interferon inducible double stranded RNA dependent
activator [Rattus norvegicus]
Length = 313
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E ++ P YE + + ++ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGTKTKNIPVYECERSDVQVHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSLPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFSITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|74004908|ref|XP_545545.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Canis lupus familiaris]
gi|194043952|ref|XP_001927740.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Sus scrofa]
Length = 313
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|403258654|ref|XP_003921868.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Saimiri
boliviensis boliviensis]
Length = 313
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|426337864|ref|XP_004032914.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Gorilla gorilla
gorilla]
Length = 313
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAE---KFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + HT T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHTLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|355713679|gb|AES04751.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Mustela putorius furo]
Length = 304
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 142/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 25 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 80
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 81 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 140
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA L + E
Sbjct: 141 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPE---------- 190
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 191 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 233
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 234 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 293
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 294 ALQYLKII 301
>gi|6755162|ref|NP_036001.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Mus musculus]
gi|81882073|sp|Q9WTX2.1|PRKRA_MOUSE RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=PKR-associated
protein X; AltName: Full=PKR-associating protein X;
Short=RAX; AltName: Full=Protein activator of the
interferon-induced protein kinase; AltName: Full=Protein
kinase, interferon-inducible double stranded
RNA-dependent activator
gi|4927414|gb|AAD33098.1|AF083032_1 PKR-associating protein RAX [Mus musculus]
gi|15030117|gb|AAH11311.1| Protein kinase, interferon inducible double stranded RNA dependent
activator [Mus musculus]
gi|74196321|dbj|BAE33056.1| unnamed protein product [Mus musculus]
gi|148695265|gb|EDL27212.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_a [Mus musculus]
Length = 313
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + ++ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQVHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSLPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIASEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|343959708|dbj|BAK63711.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Pan troglodytes]
Length = 288
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 8 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 63
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 64 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 123
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 124 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 173
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 174 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 216
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + V+++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 217 IQLLSEIAKEQGFNVTYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 276
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 277 ALQYLKII 284
>gi|301766900|ref|XP_002918870.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Ailuropoda melanoleuca]
Length = 313
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIEELSVNGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|449266107|gb|EMC77217.1| RISC-loading complex subunit TARBP2, partial [Columba livia]
Length = 283
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 146/322 (45%), Gaps = 61/322 (18%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAI 125
L M + +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S
Sbjct: 7 LAQMLAASPGKTPISLLQEYGTRVGKTPGYDLLKAEGQAHQPNFTFRVTVGDIS----CT 62
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRD-------DEKLMCQKENLFKVEP-----NPVGQLQ 173
G G SKK AKH AA+ L L G D +E + V P NPVG LQ
Sbjct: 63 GQGPSKKAAKHKAAEVALKLLKGGDMLDPPSPEEPRGTPLDMKPPVSPPQSECNPVGALQ 122
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
E + + W P Y + +G H + FT+ V + E G G SKK+AKR+AA ML +
Sbjct: 123 ELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAKRDAAAKMLVRI 182
Query: 234 ETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEK 293
VP+E + + E +E Q+ V P
Sbjct: 183 HNVPMEPRDGSEAEGDEE-------------------------QFCMV-------PPGWG 210
Query: 294 LLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGT 353
+ T + E E + +S++DI+ S + Q L++L+T P TV G+
Sbjct: 211 HMGTPGELSE-------------EQSFAISYLDIDALSLSGLHQCLVELSTQPATVCHGS 257
Query: 354 GASIEVAKIEAVYRALDFLQIM 375
GAS + A+ +A AL +L+IM
Sbjct: 258 GASRDGARSQAARNALQYLRIM 279
>gi|148232429|ref|NP_001085574.1| RISC-loading complex subunit tarbp2 [Xenopus laevis]
gi|49115615|gb|AAH72963.1| MGC82499 protein [Xenopus laevis]
Length = 331
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 162/352 (46%), Gaps = 70/352 (19%)
Query: 69 MRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
M ++ +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ + G G
Sbjct: 1 MLASSPGKTPISLLQEYGTRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN----CTGQG 56
Query: 129 KSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF-------------------------- 162
SKK AKH AA+ L L + +MC++ ++
Sbjct: 57 PSKKAAKHKAAEVALSLLKEGEMFGVMCEENSVVLSVEQPAELKEVADVSPPPTTRNHTI 116
Query: 163 ---------KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEG 213
+ E NPVG LQE + + W P Y + +G H + FT+ V + E G
Sbjct: 117 EMKPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFLEIG 176
Query: 214 MGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK--------GESNGLKHTHDST 265
G SKK+AKR AA ML + VP E E + E +++ S G T DS
Sbjct: 177 SGTSKKLAKRNAAAKMLLQIHQVPAEHRESGETEPEEDQFSVGKLDGSRSRGTACTWDSL 236
Query: 266 FLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN--LIDEVEDPILYLEDLSDELKYRVS 323
+ + G EK+L R+ L L+DLS+E +++S
Sbjct: 237 ------------------RNSSG---EKILHLRSNPLTILSSGFCSLLQDLSEEQSFQIS 275
Query: 324 FVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++DI+E+S + Q L++L+T P TV G+ + + A+ A + AL +L+IM
Sbjct: 276 YLDIDERSLSGLCQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIM 327
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 30 VKVEENSPSRVLFDNNEIKQIPKVS----TNNLPLEEAARLEVMRLNTGDRTPVSLMQEL 85
V EENS + E+K++ VS T N +E L + + PV +QEL
Sbjct: 82 VMCEENSVVLSVEQPAELKEVADVSPPPTTRNHTIEMKPPLSAQQ---SECNPVGALQEL 138
Query: 86 LSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD 144
+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK NAA +L
Sbjct: 139 VVQKGWRLPEYTVTQESG----PAHRKEFTMTCRVERFLEIGSGTSKKLAKRNAAAKMLL 194
Query: 145 QL 146
Q+
Sbjct: 195 QI 196
>gi|281352310|gb|EFB27894.1| hypothetical protein PANDA_007403 [Ailuropoda melanoleuca]
Length = 296
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 16 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 71
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 72 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 131
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 132 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 181
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 182 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 224
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 225 IQLLSEIAKEQGFNITYLDIEELSVNGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 284
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 285 ALQYLKII 292
>gi|213417919|ref|NP_001132990.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 3 [Homo sapiens]
gi|332209456|ref|XP_003253828.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Nomascus
leucogenys]
gi|402888757|ref|XP_003907715.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Papio anubis]
gi|410035931|ref|XP_003949974.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Pan troglodytes]
gi|37955186|gb|AAP20061.1| HSD14 [Homo sapiens]
gi|119631439|gb|EAX11034.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, isoform CRA_a [Homo sapiens]
Length = 288
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 8 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 63
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 64 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 123
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 124 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 173
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 174 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 216
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 217 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 276
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 277 ALQYLKII 284
>gi|432107292|gb|ELK32706.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Myotis davidii]
Length = 288
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 8 KTPIQVLHEYGMKTKNIPVYECERSDMQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 63
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 64 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 123
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 124 QEGGPAHKREYTTICKLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 173
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N +
Sbjct: 174 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TNY 216
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 217 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCSNAQSDAAHN 276
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 277 ALQYLKII 284
>gi|30584929|gb|AAP36730.1| Homo sapiens protein kinase, interferon-inducible double stranded
RNA dependent activator [synthetic construct]
gi|33303847|gb|AAQ02437.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, partial [synthetic construct]
gi|60653869|gb|AAX29627.1| protein kinase interferon-inducible double stranded RNA dependent
activator [synthetic construct]
Length = 314
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|62901980|gb|AAY18941.1| DKFZp564I0123 [synthetic construct]
Length = 337
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 57 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 112
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 113 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 172
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 173 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 222
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 223 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 265
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 266 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 325
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 326 ALQYLKII 333
>gi|149022336|gb|EDL79230.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_b [Rattus norvegicus]
Length = 313
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + ++ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQVHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSLPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFSITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|4505581|ref|NP_003681.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Homo sapiens]
gi|386780754|ref|NP_001247776.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Macaca mulatta]
gi|114581964|ref|XP_515940.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Pan troglodytes]
gi|332209454|ref|XP_003253827.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Nomascus
leucogenys]
gi|397489070|ref|XP_003815560.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Pan paniscus]
gi|74735517|sp|O75569.1|PRKRA_HUMAN RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=PKR-associated
protein X; AltName: Full=PKR-associating protein X;
AltName: Full=Protein activator of the
interferon-induced protein kinase; AltName: Full=Protein
kinase, interferon-inducible double stranded
RNA-dependent activator
gi|4927416|gb|AAD33099.1|AF083033_1 PKR-associating protein RAX [Homo sapiens]
gi|3290198|gb|AAC25672.1| protein activator of the interferon-induced protein kinase [Homo
sapiens]
gi|12052756|emb|CAB66550.1| hypothetical protein [Homo sapiens]
gi|14495717|gb|AAH09470.1| Protein kinase, interferon-inducible double stranded RNA dependent
activator [Homo sapiens]
gi|30583325|gb|AAP35907.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Homo sapiens]
gi|49065476|emb|CAG38556.1| PRKRA [Homo sapiens]
gi|61362125|gb|AAX42165.1| protein kinase interferon-inducible double stranded RNA dependent
activator [synthetic construct]
gi|61362132|gb|AAX42166.1| protein kinase interferon-inducible double stranded RNA dependent
activator [synthetic construct]
gi|62630137|gb|AAX88882.1| unknown [Homo sapiens]
gi|119631441|gb|EAX11036.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, isoform CRA_c [Homo sapiens]
gi|158254634|dbj|BAF83290.1| unnamed protein product [Homo sapiens]
gi|190689557|gb|ACE86553.1| protein kinase, interferon-inducible double stranded RNA dependent
activator protein [synthetic construct]
gi|307685745|dbj|BAJ20803.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [synthetic construct]
gi|380817486|gb|AFE80617.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Macaca mulatta]
gi|383422389|gb|AFH34408.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Macaca mulatta]
gi|384950022|gb|AFI38616.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Macaca mulatta]
gi|410208224|gb|JAA01331.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
gi|410264034|gb|JAA19983.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
gi|410296018|gb|JAA26609.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
gi|410341901|gb|JAA39897.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
Length = 313
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|213417911|ref|NP_001132989.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 2 [Homo sapiens]
gi|21739361|emb|CAD38725.1| hypothetical protein [Homo sapiens]
gi|119631440|gb|EAX11035.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, isoform CRA_b [Homo sapiens]
gi|410296016|gb|JAA26608.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
Length = 302
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 22 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 77
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 78 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 137
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 138 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 187
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 188 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 230
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 231 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 290
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 291 ALQYLKII 298
>gi|77917582|ref|NP_001030113.1| RISC-loading complex subunit TARBP2 [Rattus norvegicus]
gi|123780849|sp|Q3SWU0.1|TRBP2_RAT RecName: Full=RISC-loading complex subunit TARBP2
gi|74356245|gb|AAI04691.1| TAR (HIV-1) RNA binding protein 2 [Rattus norvegicus]
gi|149031914|gb|EDL86826.1| TAR (HIV) RNA binding protein 2 [Rattus norvegicus]
Length = 365
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 160/356 (44%), Gaps = 62/356 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLD--------------------------------- 144
G SKK A KH S+L+
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSLLDSSVPEDTAVIAAEAAAPVPS 135
Query: 145 QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
L+ R M + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 ALLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTC 195
Query: 205 YVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS 264
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H S
Sbjct: 196 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HFS 245
Query: 265 TFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN-----LIDEVEDPILYLEDLSDELK 319
++ ++ + + + EK+LS RN L L +LS E
Sbjct: 246 IGVSSRLDGLRNRGPGCTWDSLRNSVGEKILSLRNCSVGSLGSLGSACCSILSELSAEQA 305
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ +A RAL +L+IM
Sbjct: 306 FHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAARGDAARRALQYLRIM 361
>gi|291389267|ref|XP_002711070.1| PREDICTED: TAR RNA binding protein 2 [Oryctolagus cuniculus]
Length = 366
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 168/365 (46%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRDD--------------EKLMCQKENLFKV-------- 164
G SKK AKH AA+ L L G E L+ ++ F V
Sbjct: 76 QGPSKKAAKHKAAEVALRHLKGGSMLEPALEDHSSFSPLESLLPERVPGFTVGTVAAPVP 135
Query: 165 ---------------------EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVLTRSPPVEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D++ +G
Sbjct: 196 CRVERFVEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDDQFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYHTVFSQKTKGPL--LEKLLSTRNLIDEVEDPILY 310
L+H T DS L + +KI + PL L L S +
Sbjct: 256 LRHRGPGCTWDS--LRNSVGEKILSLRSC-------PLGSLSALGSACCSV--------- 297
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
L +LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 298 LSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>gi|12849779|dbj|BAB28477.1| unnamed protein product [Mus musculus]
Length = 313
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 143/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + ++ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQVHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G S K AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASNKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSLPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIASEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|354477724|ref|XP_003501069.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Cricetulus griseus]
Length = 313
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + M K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPSMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSLPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFSITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|190690921|gb|ACE87235.1| protein kinase, interferon-inducible double stranded RNA dependent
activator protein [synthetic construct]
Length = 313
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 143/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R + + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYATICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|62897775|dbj|BAD96827.1| protein kinase, interferon-inducible double stranded RNA dependent
activator variant [Homo sapiens]
Length = 313
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 143/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+ V G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPIAVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>gi|432112569|gb|ELK35285.1| RISC-loading complex subunit TARBP2 [Myotis davidii]
Length = 366
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 163/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGR---------------------DDEKLMCQKENLFKV- 164
G SKK AKH AA+ L L G +D + V
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDGPVFTAAAAATPVP 135
Query: 165 ---------------------EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SALPTRSPPMEVPPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFVEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDEL 318
S + ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T PVTV G+ A+ E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPVTVCHGSAATREAARGEAARRALQYLKIM 362
>gi|89114084|gb|ABD61633.1| R3D1 [Drosophila melanogaster]
gi|89114086|gb|ABD61634.1| R3D1 [Drosophila melanogaster]
gi|89114088|gb|ABD61635.1| R3D1 [Drosophila melanogaster]
gi|89114090|gb|ABD61636.1| R3D1 [Drosophila melanogaster]
gi|89114092|gb|ABD61637.1| R3D1 [Drosophila melanogaster]
gi|89114094|gb|ABD61638.1| R3D1 [Drosophila melanogaster]
gi|89114098|gb|ABD61640.1| R3D1 [Drosophila melanogaster]
Length = 407
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 61/73 (83%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 101 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 160
Query: 136 HNAAKSVLDQLIG 148
H AA++++D+LIG
Sbjct: 161 HAAARALIDKLIG 173
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 267 LTPQILKKIQQYHTVFSQKTKGPLL--EKLLSTRNLIDEVEDPILYLEDLSDELKYRVSF 324
LT Q K+ Q+H T LL +K N ID ++ L +++ E ++ V++
Sbjct: 323 LTTQHSNKVSQFHKTLKNATGKKLLKLQKTCLKNNKIDYIK----LLGEIATENQFEVTY 378
Query: 325 VDIEEKSKADGFQSLLQLTTTPVTVFCGT 353
VDIEEK+ + FQ L+QL+T PV V G+
Sbjct: 379 VDIEEKTFSGQFQCLVQLSTLPVGVCHGS 407
>gi|89114114|gb|ABD61648.1| R3D1 [Drosophila simulans]
Length = 407
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 61/73 (83%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 101 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 160
Query: 136 HNAAKSVLDQLIG 148
H AA++++D+LIG
Sbjct: 161 HAAARALIDKLIG 173
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 267 LTPQILKKIQQYHTVFSQKTKGPLL--EKLLSTRNLIDEVEDPILYLEDLSDELKYRVSF 324
LT Q K+ Q+H T LL +K N ID ++ L +++ E ++ V++
Sbjct: 323 LTTQHSNKVSQFHKTLKNATGKKLLKLQKTCLKNNKIDYIK----LLGEIATENQFEVTY 378
Query: 325 VDIEEKSKADGFQSLLQLTTTPVTVFCGT 353
VDIEEK+ + FQ L+QL+T PV V G+
Sbjct: 379 VDIEEKTFSGQFQCLVQLSTLPVGVCHGS 407
>gi|89114096|gb|ABD61639.1| R3D1 [Drosophila melanogaster]
Length = 407
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 61/73 (83%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 101 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 160
Query: 136 HNAAKSVLDQLIG 148
H AA++++D+LIG
Sbjct: 161 HAAARALIDKLIG 173
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 267 LTPQILKKIQQYHTVFSQKTKGPLL--EKLLSTRNLIDEVEDPILYLEDLSDELKYRVSF 324
LT Q K+ Q+H T LL +K N ID ++ L +++ E ++ V++
Sbjct: 323 LTTQHSNKVSQFHKTLKNATGKKLLRLQKTCLKNNKIDYIK----LLGEIATENQFEVTY 378
Query: 325 VDIEEKSKADGFQSLLQLTTTPVTVFCGT 353
VDIEEK+ + FQ L+QL+T PV V G+
Sbjct: 379 VDIEEKTFSGQFQCLVQLSTLPVGVCHGS 407
>gi|89114100|gb|ABD61641.1| R3D1 [Drosophila simulans]
gi|89114102|gb|ABD61642.1| R3D1 [Drosophila simulans]
gi|89114104|gb|ABD61643.1| R3D1 [Drosophila simulans]
gi|89114106|gb|ABD61644.1| R3D1 [Drosophila simulans]
gi|89114108|gb|ABD61645.1| R3D1 [Drosophila simulans]
gi|89114110|gb|ABD61646.1| R3D1 [Drosophila simulans]
gi|89114112|gb|ABD61647.1| R3D1 [Drosophila simulans]
Length = 407
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 61/73 (83%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S + + A+G+G+SKKEAK
Sbjct: 101 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK 160
Query: 136 HNAAKSVLDQLIG 148
H AA++++D+LIG
Sbjct: 161 HAAARALIDKLIG 173
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 267 LTPQILKKIQQYHTVFSQKTKGPLL--EKLLSTRNLIDEVEDPILYLEDLSDELKYRVSF 324
LT Q K+ Q+H T LL +K N ID ++ L +++ E ++ V++
Sbjct: 323 LTTQHSNKVSQFHKTLKNATGKKLLKLQKTCLKNNKIDYIK----LLGEIATENQFEVTY 378
Query: 325 VDIEEKSKADGFQSLLQLTTTPVTVFCGT 353
VDIEEK+ + FQ L+QL+T PV V G+
Sbjct: 379 VDIEEKTFSGQFQCLVQLSTLPVGVCHGS 407
>gi|301775807|ref|XP_002923310.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Ailuropoda
melanoleuca]
Length = 366
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 161/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAASPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SALPTRSPPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFVEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPI-----LYLEDLSDEL 318
S + ++ + + EK+LS R+ + L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSAGEKILSLRSCSSGTLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIM 362
>gi|119571203|gb|EAW50818.1| hCG201528 [Homo sapiens]
Length = 288
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 143/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 8 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 63
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + N +G LQE + W P Y
Sbjct: 64 HRAAEAAINILKANASTCFAVPDPLMPDPSKQPKNQLNLIGSLQELAIHHGWRLPEYTLS 123
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 124 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAE---KFLAKFSNISPE------- 173
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 174 NHISLTNVVGHSLGCT------------WHSLRNSPGEKNNLLKRSLLSIPN-----TDY 216
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 217 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 276
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 277 ALQYLKII 284
>gi|281341836|gb|EFB17420.1| hypothetical protein PANDA_012447 [Ailuropoda melanoleuca]
Length = 350
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 161/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 5 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 59
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 60 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAASPVP 119
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 120 SALPTRSPPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 179
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 180 CRVERFVEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HF 229
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPI-----LYLEDLSDEL 318
S + ++ + + EK+LS R+ + L +LS+E
Sbjct: 230 SIGVGSRLDGLRNRGPGCTWDSLRNSAGEKILSLRSCSSGTLGALGPACCSVLSELSEEQ 289
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 290 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIM 346
>gi|164448622|ref|NP_001069146.2| RISC-loading complex subunit TARBP2 [Bos taurus]
gi|229891741|sp|Q0IIG6.2|TRBP2_BOVIN RecName: Full=RISC-loading complex subunit TARBP2
gi|296487914|tpg|DAA30027.1| TPA: RISC-loading complex subunit TARBP2 [Bos taurus]
Length = 366
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 164/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVPTRSSPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPEDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDEL 318
S + ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIM 362
>gi|354490187|ref|XP_003507241.1| PREDICTED: RISC-loading complex subunit TARBP2 [Cricetulus griseus]
gi|344239257|gb|EGV95360.1| RISC-loading complex subunit TARBP2 [Cricetulus griseus]
Length = 365
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 161/356 (45%), Gaps = 62/356 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLD--------------------------------- 144
G SKK A KH S+L+
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSLLESSLPEDTPVIAAEVAAPVPS 135
Query: 145 QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
++ R M + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 AILTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTC 195
Query: 205 YVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS 264
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H S
Sbjct: 196 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HFS 245
Query: 265 TFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTR-----NLIDEVEDPILYLEDLSDELK 319
++ ++ + + + EK+LS R +L L +LS+E
Sbjct: 246 IGVSSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSVGSLGTLGSACCSVLSELSEEQA 305
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 306 FHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLRIM 361
>gi|355786187|gb|EHH66370.1| hypothetical protein EGM_03347, partial [Macaca fascicularis]
Length = 306
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 154/332 (46%), Gaps = 47/332 (14%)
Query: 58 LPLE--EAARLEVMRLNTG--DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRI 113
LPLE ++ + ++ T +TP+ ++ E + P YE + + I+ P F +R+
Sbjct: 4 LPLEREDSGTFSLGKMITAMPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRV 63
Query: 114 SLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDD--------EKLMCQKENLFKVE 165
++ G G KK KH AA++ ++ L +D+ + LM K +
Sbjct: 64 TVGD----ITCRGEGTGKKLVKHRAAEAAINIL--KDNASICFAVPDALMSDPSKQPKNQ 117
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NPVG LQE W P Y + G H+R +T + + E G G SKK AKR A
Sbjct: 118 LNPVGSLQELAFHHGWRRPEYTLSQEGGPAHKREYTTVCRLEAFMETGKGASKKQAKRNA 177
Query: 226 ALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQ 284
A KFL PE + +N + H+ T +H++ S
Sbjct: 178 A---EKFLAKFSNISPE-------NHISLTNVVGHSLGCT------------WHSLRNSP 215
Query: 285 KTKGPLLEK-LLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLT 343
K LL++ LLS N D I L +++ E + ++++DI++ S +Q L +L+
Sbjct: 216 GEKINLLKRSLLSIPN-----TDYIQPLSEIAKEQGFNITYLDIDKLSANGQYQCLAELS 270
Query: 344 TTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
T+P+TV G+G S A+ +A + AL +L+I+
Sbjct: 271 TSPITVCHGSGISCGNAQSDAAHNALQYLKII 302
>gi|359385734|ref|NP_001240724.1| RISC-loading complex subunit TARBP2 isoform 2 [Mus musculus]
gi|74188185|dbj|BAE25768.1| unnamed protein product [Mus musculus]
Length = 274
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 15/216 (6%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 65 ECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 124
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + TVP++ + + E D+ H S ++ ++ +
Sbjct: 125 AAAKMLLRVHTVPLDARDGNEAEPDDD----------HFSIGVSSRLDGLRNRGPGCTWD 174
Query: 285 KTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
+ + EK+LS R+ + + L +LS+E + VS++DIEE S + Q L
Sbjct: 175 SLRNSVGEKILSLRSCSVGSLGALGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCL 234
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++L+T P TV G+ + E A+ +A +RAL +L+IM
Sbjct: 235 VELSTQPATVCYGSATTREAARGDAAHRALQYLRIM 270
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 78 PVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
PV +QEL+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK
Sbjct: 68 PVGALQELVVQKGWRLPEYMVTQESG----PAHRKEFTMTCRVERFIEIGSGTSKKLAKR 123
Query: 137 NAAKSVL 143
NAA +L
Sbjct: 124 NAAAKML 130
>gi|387018942|gb|AFJ51589.1| RISC-loading complex subunit TARBP2 [Crotalus adamanteus]
Length = 360
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 163/362 (45%), Gaps = 79/362 (21%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAI 125
+E M + +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S
Sbjct: 22 IEQMLASNPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDIS----CT 77
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRD-------DEKLMCQKENLF---------------- 162
G G SKK AKH AA+ L L G + DE E L
Sbjct: 78 GQGPSKKAAKHKAAEVALRLLKGGNMLEQTPLDEASSLSLEPLAPTIAPEAVPVPILPAA 137
Query: 163 ----------------KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV 206
+ E NPVG LQE + + W P Y + +G H + FT+ V
Sbjct: 138 SPRSSPLDIKSPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV 197
Query: 207 NVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK-----------GES 255
+ E G G SKK+AKR AA ML + VP++ E + E +++ +S
Sbjct: 198 ERFIEIGSGTSKKLAKRNAAAKMLVRIHNVPLDPREGSEAEMEEDQFSIIAGTKLDGMKS 257
Query: 256 NGLKHTHDSTFLTPQILKKIQQY--HTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLED 313
G T DS L + +KI H+VF+ NL L++
Sbjct: 258 RGSGCTWDS--LRNSVGEKILHLKSHSVFNS-----------GFCNL----------LKE 294
Query: 314 LSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQ 373
LS+E + +S++DI+E S + FQ L++L+T P TV G+ S A+ +A AL +L+
Sbjct: 295 LSEEQSFDISYLDIDETSISGLFQCLVELSTQPATVCHGSAISRSAARADAARNALQYLR 354
Query: 374 IM 375
IM
Sbjct: 355 IM 356
>gi|426224362|ref|XP_004006340.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Ovis
aries]
Length = 366
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 163/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + + + +P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVPTRSSPMEAQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPEDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDEL 318
S + ++ + + + E++LS R+ + + L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGERILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIM 362
>gi|431921617|gb|ELK18969.1| RISC-loading complex subunit TARBP2 [Pteropus alecto]
Length = 366
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 161/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KH----------------------------------NAAKSVL 143
G SKK A KH +AA +L
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAASAATPLL 135
Query: 144 DQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ R + + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVPARSPPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDEL 318
S + ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 SMGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>gi|149714845|ref|XP_001504584.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 1
[Equus caballus]
Length = 366
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 162/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDGLVLTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVPTRSPPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDEL 318
S + ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>gi|395732538|ref|XP_002812678.2| PREDICTED: LOW QUALITY PROTEIN: interferon-inducible double
stranded RNA-dependent protein kinase activator A [Pongo
abelii]
Length = 532
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 141/309 (45%), Gaps = 39/309 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK A
Sbjct: 251 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLA 306
Query: 135 KHNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
KH AA++ ++ L + M K + NP+G LQE + W P Y
Sbjct: 307 KHRAAEAAINILKANASICFAVPDPXMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTL 366
Query: 189 EETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGED 248
+ G H+R +T + + E G G SKK AKR AA L + E
Sbjct: 367 SQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPE--------- 417
Query: 249 VDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVED 306
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 418 -NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPNT-----D 459
Query: 307 PILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVY 366
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 460 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH 519
Query: 367 RALDFLQIM 375
AL +L+I+
Sbjct: 520 NALQYLKII 528
>gi|169146118|emb|CAQ15450.1| novel protein similar to H.sapiens PRKRA, protein kinase,
interferon-inducible double stranded RNA dependent
activator (PRKRA, zgc:162619) [Danio rerio]
Length = 300
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 149/307 (48%), Gaps = 42/307 (13%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D+TP+ L+ E + +APKYELI +G ++P F + +++ G G +KK A
Sbjct: 26 DKTPIQLLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTIGE----VTCKGRGSTKKAA 81
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP----NPVGQLQEACMTRKWPPPVYETEE 190
KH AA++ L +L+ RD + + + N E NPVG LQE M R W P Y
Sbjct: 82 KHEAAEAAL-KLLKRDSQIIDQRDNNGLSPEAGEASNPVGILQELAMQRVWCLPEYVVFM 140
Query: 191 TTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVD 250
TG H + FT+ + +E G G SKK+A+R AA NM+ L++
Sbjct: 141 ETGPGHMKEFTIACRLEGLEETGSGSSKKLARRAAAENMIAKLQS--------------- 185
Query: 251 EKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEK--LLSTRNLIDEVEDPI 308
L + + T+ P V+ + + EK LL L D I
Sbjct: 186 -------LSGSSEITWSPPS---------RVYVESLRNSTGEKVSLLKRTPLSLPNTDYI 229
Query: 309 LYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRA 368
L ++S EL ++V+++DI+E + +Q L++L+T PVTV G+G + A A + A
Sbjct: 230 QMLLEISLELGFQVTYIDIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNA 289
Query: 369 LDFLQIM 375
L +++++
Sbjct: 290 LQYIKMV 296
>gi|311255463|ref|XP_003126242.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Sus
scrofa]
Length = 366
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 161/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLI-------------------------GRDDE 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTTTAAATPIP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVATRSPPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDEL 318
S + ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 SLGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>gi|417399750|gb|JAA46862.1| Putative staufen [Desmodus rotundus]
Length = 366
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 162/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDFPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVPTRSPPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPEDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDEL 318
S + ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSILSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>gi|149714848|ref|XP_001504588.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 3
[Equus caballus]
gi|149714851|ref|XP_001504586.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 2
[Equus caballus]
Length = 345
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 156/348 (44%), Gaps = 62/348 (17%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G G SKK AK
Sbjct: 8 KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQGPSKKAAK 63
Query: 136 HNAAKSVLDQLIGRD----------------------------------DEKLMCQKENL 161
H AA+ L L G + +
Sbjct: 64 HKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDGLVLTAAAAATPVPSAVPTRSPP 123
Query: 162 FKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
+V+P NPVG LQE + + W P Y + +G H + FT+ V + E
Sbjct: 124 MEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI 183
Query: 213 GMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQIL 272
G G SKK+AKR AA ML + TVP++ + + E D+ H S + ++
Sbjct: 184 GSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HFSIGVGSRLD 233
Query: 273 KKIQQYHTVFSQKTKGPLLEKLLSTR-----NLIDEVEDPILYLEDLSDELKYRVSFVDI 327
+ + + EK+LS R +L L +LS+E + VS++DI
Sbjct: 234 GLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQAFHVSYLDI 293
Query: 328 EEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
EE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 294 EELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 341
>gi|335287861|ref|XP_003355458.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Sus
scrofa]
Length = 345
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 156/348 (44%), Gaps = 62/348 (17%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
+TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G G SKK A
Sbjct: 8 KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQGPSKKAAK 63
Query: 135 --------KHNAAKSVLDQLI-------------------------GRDDEKLMCQKENL 161
KH S+L+ + + +
Sbjct: 64 HKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTTTAAATPIPSAVATRSPP 123
Query: 162 FKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
+V+P NPVG LQE + + W P Y + +G H + FT+ V + E
Sbjct: 124 MEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI 183
Query: 213 GMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQIL 272
G G SKK+AKR AA ML + TVP++ + + E D+ H S + ++
Sbjct: 184 GSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HFSLGVGSRLD 233
Query: 273 KKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDELKYRVSFVDI 327
+ + + EK+LS R+ + + L +LS+E + VS++DI
Sbjct: 234 GLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQAFHVSYLDI 293
Query: 328 EEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
EE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 294 EELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 341
>gi|251764897|sp|B0V3F8.2|PRKRA_DANRE RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog
gi|169146119|emb|CAQ15451.1| novel protein similar to H.sapiens PRKRA, protein kinase,
interferon-inducible double stranded RNA dependent
activator (PRKRA, zgc:162619) [Danio rerio]
Length = 282
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 149/307 (48%), Gaps = 42/307 (13%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D+TP+ L+ E + +APKYELI +G ++P F + +++ G G +KK A
Sbjct: 8 DKTPIQLLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTIGE----VTCKGRGSTKKAA 63
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP----NPVGQLQEACMTRKWPPPVYETEE 190
KH AA++ L +L+ RD + + + N E NPVG LQE M R W P Y
Sbjct: 64 KHEAAEAAL-KLLKRDSQIIDQRDNNGLSPEAGEASNPVGILQELAMQRVWCLPEYVVFM 122
Query: 191 TTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVD 250
TG H + FT+ + +E G G SKK+A+R AA NM+ L++
Sbjct: 123 ETGPGHMKEFTIACRLEGLEETGSGSSKKLARRAAAENMIAKLQS--------------- 167
Query: 251 EKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEK--LLSTRNLIDEVEDPI 308
L + + T+ P V+ + + EK LL L D I
Sbjct: 168 -------LSGSSEITWSPPS---------RVYVESLRNSTGEKVSLLKRTPLSLPNTDYI 211
Query: 309 LYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRA 368
L ++S EL ++V+++DI+E + +Q L++L+T PVTV G+G + A A + A
Sbjct: 212 QMLLEISLELGFQVTYIDIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNA 271
Query: 369 LDFLQIM 375
L +++++
Sbjct: 272 LQYIKMV 278
>gi|242021000|ref|XP_002430935.1| tar RNA binding protein, putative [Pediculus humanus corporis]
gi|212516153|gb|EEB18197.1| tar RNA binding protein, putative [Pediculus humanus corporis]
Length = 335
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 77 TPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
TPVS++QE L P YEL+ + P+F YR+ + G GKSK+EAKH
Sbjct: 5 TPVSVLQEYLVSLKQCPSYELLHNGVGTHNPLFIYRVHVND----LFEDGKGKSKREAKH 60
Query: 137 NAAKSVLDQLIGRDDEKLMCQKENLFK---VEP--NPVGQLQEACMTRKWPPPVYETEET 191
NAA+++L +L D+ K+ K ++P N VG L+E C+ +P P Y+ EE
Sbjct: 61 NAAENMLKKL-NVDETNSSVPKKQYDKYDEMDPGENYVGMLKEYCLMNPYPEPTYQVEEE 119
Query: 192 TGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPE 242
+G PH ++F + +V+ +E G+ +KK AK+ A ML+ L+ + + P+
Sbjct: 120 SGQPHCKVFKMVCFVSQLQEYGISSTKKGAKQIGAFKMLERLKKLSLNSPD 170
>gi|148235737|ref|NP_001082830.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog [Danio rerio]
gi|134025033|gb|AAI35035.1| Zgc:162619 protein [Danio rerio]
Length = 282
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 151/309 (48%), Gaps = 46/309 (14%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D+TP+ L+ E + +APKYELI +G ++P F + +++ G G +KK A
Sbjct: 8 DKTPIQLLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTIGE----VTCKGRGSTKKAA 63
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRKWPPPVYET 188
KH AA++ L L + D +++ Q++N + P NPVG LQE M R W P Y
Sbjct: 64 KHEAAEAALKLL--KRDSQIIDQRDN-NGLSPGAGEASNPVGILQELAMQRVWCLPEYVV 120
Query: 189 EETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGED 248
TG H + FT+ + +E G G SKK+A+R AA NM+ L++
Sbjct: 121 FMETGPGHMKEFTIACRLEGLEETGSGSSKKLARRAAAENMIAKLQS------------- 167
Query: 249 VDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEK--LLSTRNLIDEVED 306
L + + T+ P V+ + + EK LL L D
Sbjct: 168 ---------LSGSSEITWSPPS---------RVYVESLRNSTGEKVSLLKRTPLSLPNTD 209
Query: 307 PILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVY 366
I L ++S EL ++V+++DI+E + +Q L++L+T PVTV G+G + A A +
Sbjct: 210 YIQMLLEISLELGFQVTYIDIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAH 269
Query: 367 RALDFLQIM 375
AL +++++
Sbjct: 270 NALQYIKMV 278
>gi|403296815|ref|XP_003939290.1| PREDICTED: RISC-loading complex subunit TARBP2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 162/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTR-----NLIDEVEDPILYLEDLSDEL 318
S + ++ + + + EK+LS R +L L +LS+E
Sbjct: 246 SIGVGSRVDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLTELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>gi|296211840|ref|XP_002752581.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1
[Callithrix jacchus]
Length = 366
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 167/365 (45%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSYSPLDSSLPEDVPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D+ +G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
L++ T DS L + +KI ++ S GP ++LS
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 299
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 300 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>gi|158254910|dbj|BAF83426.1| unnamed protein product [Homo sapiens]
Length = 366
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLIGRDDE------------------------- 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRSPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D+ +G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
L++ T DS L + +KI ++ S GP ++LS
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 299
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 300 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>gi|107904|pir||A38430 trans-activation-responsive RNA-binding protein - human (fragment)
Length = 363
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 165/365 (45%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 18 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 72
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRDD----------------------------------E 152
G SKK AKH AA+ L L G
Sbjct: 73 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVP 132
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 133 SVVLTRSPAMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 192
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK----------G 253
V + E G G SKK+AKR AA ML + TVP++ + + E D+ G
Sbjct: 193 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGFRLDG 252
Query: 254 ESN-GLKHTHDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
N G T DS L + +KI ++ S GP ++LS
Sbjct: 253 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 296
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 297 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 354
Query: 371 FLQIM 375
+L+IM
Sbjct: 355 YLKIM 359
>gi|426372757|ref|XP_004053284.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Gorilla
gorilla gorilla]
Length = 366
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLIGRDDE------------------------- 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D+ +G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
L++ T DS L + +KI ++ S GP ++LS
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 299
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 300 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>gi|30585201|gb|AAP36873.1| Homo sapiens TAR (HIV) RNA binding protein 2 [synthetic construct]
gi|60653021|gb|AAX29205.1| TAR [synthetic construct]
Length = 367
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLIGRDDE------------------------- 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D+ +G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
L++ T DS L + +KI ++ S GP ++LS
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 299
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 300 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>gi|19743840|ref|NP_599150.1| RISC-loading complex subunit TARBP2 isoform a [Homo sapiens]
gi|332839225|ref|XP_003313703.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Pan
troglodytes]
gi|397521981|ref|XP_003831059.1| PREDICTED: RISC-loading complex subunit TARBP2 [Pan paniscus]
gi|441632123|ref|XP_004093097.1| PREDICTED: LOW QUALITY PROTEIN: RISC-loading complex subunit TARBP2
[Nomascus leucogenys]
gi|209572714|sp|Q15633.3|TRBP2_HUMAN RecName: Full=RISC-loading complex subunit TARBP2; AltName:
Full=TAR RNA-binding protein 2; AltName:
Full=Trans-activation-responsive RNA-binding protein
gi|13543405|gb|AAH05860.1| TAR (HIV-1) RNA binding protein 2 [Homo sapiens]
gi|30583119|gb|AAP35804.1| TAR (HIV) RNA binding protein 2 [Homo sapiens]
gi|60656097|gb|AAX32612.1| TAR RNA binding protein 2 [synthetic construct]
gi|119617126|gb|EAW96720.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_c [Homo sapiens]
gi|123993747|gb|ABM84475.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct]
gi|123994511|gb|ABM84857.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct]
gi|208967915|dbj|BAG73796.1| TAR (HIV-1) RNA binding protein 2 [synthetic construct]
gi|410213820|gb|JAA04129.1| TAR (HIV-1) RNA binding protein 2 [Pan troglodytes]
gi|410248696|gb|JAA12315.1| TAR (HIV-1) RNA binding protein 2 [Pan troglodytes]
gi|410292692|gb|JAA24946.1| TAR (HIV-1) RNA binding protein 2 [Pan troglodytes]
gi|410338861|gb|JAA38377.1| TAR (HIV-1) RNA binding protein 2 [Pan troglodytes]
Length = 366
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLIGRDDE------------------------- 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D+ +G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
L++ T DS L + +KI ++ S GP ++LS
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 299
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 300 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>gi|402886167|ref|XP_003906509.1| PREDICTED: RISC-loading complex subunit TARBP2 [Papio anubis]
gi|355564287|gb|EHH20787.1| TAR RNA-binding protein 2 [Macaca mulatta]
gi|383421127|gb|AFH33777.1| RISC-loading complex subunit TARBP2 isoform a [Macaca mulatta]
gi|384939668|gb|AFI33439.1| RISC-loading complex subunit TARBP2 isoform a [Macaca mulatta]
Length = 366
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLIGRDDE------------------------- 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPIFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D+ +G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
L++ T DS L + +KI ++ S GP ++LS
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 299
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 300 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>gi|355786146|gb|EHH66329.1| TAR RNA-binding protein 2 [Macaca fascicularis]
Length = 366
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLIGRDDE------------------------- 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPIFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D+ +G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
L++ T DS L + +KI ++ S GP ++LS
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 299
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 300 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>gi|307167407|gb|EFN60992.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A-like protein [Camponotus floridanus]
Length = 341
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 61/349 (17%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QE++ ++G P YELI G + F YR+ AIGSG+ KKEAK
Sbjct: 3 KTPVSILQEMMVKQGMVPDYELIHNGGGRHVNTFTYRVICDG----LTAIGSGRCKKEAK 58
Query: 136 HNAAKSVLDQLI-GRDDEKL-------MCQKENLFKVEP------------NPVGQLQEA 175
H AAK++L ++I R+ +L + + F P N +G+LQ+
Sbjct: 59 HEAAKAMLTEIIKHRNYPQLPAASTPAVSPARSPFHSAPLPPKIPANVPFVNAIGELQDL 118
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
C P Y + TG PH R+FT+ V+ + EEG+ +KK AK EAA M++ ++
Sbjct: 119 CAENNLMEPEYVLTKDTGPPHARIFTIQCKVSNFVEEGVQSTKKQAKHEAARKMVERIKG 178
Query: 236 VPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILK-----------------KIQQY 278
+ Q ++K ES D + + K K+ +Y
Sbjct: 179 L------VSQMNSTEDKEESLNASLVTDEMEIMNRNAKEYYQALNKSTRRINLGIKLAEY 232
Query: 279 HTVF----SQKTKGPLLEKLLS--------TRNLIDEVEDPILYLEDLSDELKYRVSFVD 326
HT + + + +LE+L T L + +++ + LE + E+ V+ D
Sbjct: 233 HTKWRDSLEEDKRNKILEELHCINFETCDDTDELNELIKETLSRLETILLEVNVTVNTKD 292
Query: 327 IEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
I + + F ++L T P+ G G + + A A+++ ++ L+++
Sbjct: 293 I--LADNNYFMKTIELNTCPLLTQIGMGKTKQEALRNALFQIINSLKLL 339
>gi|339909|gb|AAA36765.1| TAR RNA binding protein [Homo sapiens]
Length = 345
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 160/356 (44%), Gaps = 78/356 (21%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G G SKK AK
Sbjct: 8 KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQGPSKKAAK 63
Query: 136 HNAAKSVLDQLIGRDD----------------------------------EKLMCQKENL 161
H AA+ L L G ++ +
Sbjct: 64 HKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPA 123
Query: 162 FKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
+++P NPVG LQE + + W P Y + +G H + FT+ V + E
Sbjct: 124 MELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI 183
Query: 213 GMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK----------GESN-GLKHT 261
G G SKK+AKR AA ML + TVP++ + + E D+ G N G T
Sbjct: 184 GSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGFRLDGLRNRGPGCT 243
Query: 262 HDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELK 319
DS L + +KI ++ S GP ++LS +LS+E
Sbjct: 244 WDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS----------------ELSEEQA 285
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 286 FHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 341
>gi|19743838|ref|NP_004169.3| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens]
gi|85068512|ref|NP_599151.2| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens]
gi|332839227|ref|XP_003313704.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Pan
troglodytes]
gi|332839229|ref|XP_003313705.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Pan
troglodytes]
gi|426372759|ref|XP_004053285.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Gorilla
gorilla gorilla]
gi|426372761|ref|XP_004053286.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Gorilla
gorilla gorilla]
gi|119617123|gb|EAW96717.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_a [Homo sapiens]
Length = 345
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 161/356 (45%), Gaps = 78/356 (21%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
+TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G G SKK A
Sbjct: 8 KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQGPSKKAAK 63
Query: 135 --------KHNAAKSVLDQLIGRDDE-------------------------KLMCQKENL 161
KH S+L+ + ++ +
Sbjct: 64 HKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPP 123
Query: 162 FKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
+++P NPVG LQE + + W P Y + +G H + FT+ V + E
Sbjct: 124 MELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI 183
Query: 213 GMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNGLKH-----T 261
G G SKK+AKR AA ML + TVP++ + + E D+ +GL++ T
Sbjct: 184 GSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGPGCT 243
Query: 262 HDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELK 319
DS L + +KI ++ S GP ++LS +LS+E
Sbjct: 244 WDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS----------------ELSEEQA 285
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 286 FHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 341
>gi|7412848|gb|AAB50581.2| TAR RNA binding protein 2 [Homo sapiens]
Length = 366
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 164/365 (44%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLIGRDDE------------------------- 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK----------G 253
V + E G G SKK+AKR AA ML + TVP++ + + E D+ G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGFRLDG 255
Query: 254 ESN-GLKHTHDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
N G T DS L + +KI ++ S GP ++LS
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 299
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 300 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>gi|339233356|ref|XP_003381795.1| ribosome biogenesis protein BOP1 [Trichinella spiralis]
gi|316979346|gb|EFV62151.1| ribosome biogenesis protein BOP1 [Trichinella spiralis]
Length = 983
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 147/337 (43%), Gaps = 52/337 (15%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N G ++P+SL+ E+ ++G P YEL+ +G + +F YR+ + S V+ G GKSK
Sbjct: 660 NKGVKSPLSLLHEICGKKGLTPMYELLTSQGQGVDSLFVYRLCIDS----VVSTGRGKSK 715
Query: 132 KEAKHNAAKSVLDQLI---------------------------GRDDEKLMCQKENLFKV 164
K AK NAA + L ++ +DDE+ + K
Sbjct: 716 KLAKQNAALNWLMMIVEQGNHRNWGISGQTPAEAKQFLLRLAAYKDDEQGGVNGDGSGKS 775
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
V LQE C+ + + PV+ E G H++ F V + YK+ G G+SKK+AK+
Sbjct: 776 NTVYVNVLQEFCIQKHYLKPVFTEEGMCGAQHDQTFFVSVELGEYKKTGSGRSKKLAKQN 835
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTF-LTPQILKKI-----QQY 278
AA ML FL P ++ + EK E L F + +K I QY
Sbjct: 836 AAHLMLDFLYNTP---EDELNAHLLIEKDEDPMLNVQLRKAFEIRSLAVKSIIGEYGVQY 892
Query: 279 HTVFSQKTKGPLLEKLLSTRNLIDEVEDPIL--YLEDLSDELKYRVSFVDIEEKSKADGF 336
+ FS +T +LI ++ I +S+EL + ++ + K
Sbjct: 893 DSNFSLET--------FKNMDLIHQIPADIHLGLFSAISNELDLDYAMSEMLDNDK--NV 942
Query: 337 QSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQ 373
+Q+ + P V G+G + E A++ +++ L LQ
Sbjct: 943 VLFMQIKSHPSMVLVGSGKTFEQARLSVIFKFLIALQ 979
>gi|383865158|ref|XP_003708042.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Megachile rotundata]
Length = 336
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 23/175 (13%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++TPVS++QE++ ++ T P YELI G + F Y++ A G+G+SKK+A
Sbjct: 2 NKTPVSILQEMMVKKHTVPNYELIHDGGGTHMNTFTYKVICDG----LTATGTGRSKKDA 57
Query: 135 KHNAAKSVLDQLIGRDD--------------EKLMCQKENLFKVEP-----NPVGQLQEA 175
KH AAK++L+ + L Q + ++ P N +G LQ+
Sbjct: 58 KHEAAKAMLETIAAHRGYPQLPASPAQSPVRTPLPPQVPEVPRIPPTEPFVNAIGALQDL 117
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
C P+Y G PH ++FT+ V+ +KE G+ K+KK AK+EAA ML
Sbjct: 118 CAENNLQEPLYVPISDVGPPHAKIFTIQCEVSTFKEIGVAKTKKQAKQEAAKKML 172
>gi|440900674|gb|ELR51753.1| RISC-loading complex subunit TARBP2 [Bos grunniens mutus]
Length = 364
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 162/357 (45%), Gaps = 65/357 (18%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVPTRSSPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPEDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDEL 318
S + ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++D E S + Q L++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLD--ELSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIM 360
>gi|226480664|emb|CAX73429.1| Trans-activation-responsive RNA-binding protein [Schistosoma
japonicum]
Length = 358
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 60/344 (17%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
RTP+S++QE+ ++G P YEL+ EG I+EP++ + + + + A G SKK AK
Sbjct: 8 RTPISILQEVCVKKGITPLYELVSSEGPIHEPLYVFLCT----AGPFSATSKGASKKRAK 63
Query: 136 HNAAKSVLDQLIGR----DDEKLMCQKENLFKV--------------------------- 164
H A+ +L +++ + EK + ++ +
Sbjct: 64 HQASYLILLKMLNSRLLTETEKYALRDIHIAAINVLGSDFMDSLDDVELDGLPNRIKQEE 123
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E N VG+LQE C WPPP YE P + + + G G SKK AKR
Sbjct: 124 EGNFVGRLQELCQKNIWPPPSYEFLTIQSTPSGNEYGCKVRLWKWTHTGFGNSKKSAKRR 183
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDE-------KGESNGLKHT----HDSTFLTPQILK 273
AAL +L + + IP++ +D++E K + + +K + +T +T + L+
Sbjct: 184 AALGLLDSIIKNNLTIPQEAL-DDMEEETLSLLNKDDQSNIKESKLENEAATRITTKALR 242
Query: 274 KIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKA 333
+ K K P + N D++++P YLE++ D K V + + ++
Sbjct: 243 GLWNGK---GGKVKVPPI-------NTTDKMDNPCEYLEEICDCAKITVVYTYVAVNNQE 292
Query: 334 DGFQSLLQLTTTPVTVFCGTGAS-IEVAKIEAVYRALDFLQIMN 376
+L+T P V +S + A+ +A R + FL+ M+
Sbjct: 293 --MICFAELSTLPPHVIKSQLSSDLGSARKDAARRCILFLKAMS 334
>gi|328779214|ref|XP_001121349.2| PREDICTED: probable RISC-loading complex subunit BRAFLDRAFT_242885
[Apis mellifera]
Length = 337
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 40/256 (15%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QE++ + P YELI G + +F Y++ +A G G+SKK+AK
Sbjct: 3 KTPVSILQEMMVKNKITPNYELIHDGGGSHMNVFAYQVKCDD----LIASGIGRSKKDAK 58
Query: 136 HNAAKSVLDQLIGRDD--------------EKLMCQKENLFKVEP-----NPVGQLQEAC 176
H AAK++L+ + + L+ + ++ P N VG LQ+ C
Sbjct: 59 HEAAKAMLETIATKRGYLQLPASPAQSPIRTPLLPIIPEISRIPPDIPFVNAVGALQDLC 118
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLET 235
+ P Y+ G PH ++FT+ V KE G+ K+KK AK+EAA ML K +
Sbjct: 119 VENNLQDPKYQQISDVGPPHAKIFTIECEVATLKEIGVAKTKKQAKQEAAKKMLDKLTDL 178
Query: 236 VPI----EIPEKKQGEDVDEKGE-SNGL---KHTHDSTFLTPQILK---KIQQYHTVFSQ 284
VP I +KK+ +++D++ E SN + ++T S T + + K+ +YH F
Sbjct: 179 VPDLNDNNIFDKKK-QNIDQEMENSNKIAKAQYTKLSKLPTAKKINLGIKLSEYHIQFKS 237
Query: 285 K----TKGPLLEKLLS 296
+ T+ ++E++LS
Sbjct: 238 QYDDETRKEIIERILS 253
>gi|340714833|ref|XP_003395928.1| PREDICTED: probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Bombus terrestris]
Length = 332
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 45/300 (15%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D+TPVS++ E++++ P YELI G + F YR++ A G G+SKK+A
Sbjct: 2 DKTPVSILHEIMAKNLVMPNYELIHDGGGTHINTFTYRVTCEG----LTATGIGRSKKDA 57
Query: 135 KHNAAKSVLDQLIGRDDEKLM----CQKENLFKVEP---------------NPVGQLQEA 175
KH AAK++L+ + + Q + P N VG LQ+
Sbjct: 58 KHEAAKAMLEAIAAHRGHLQLPASPAQSSVRTPLPPTIPEVKRTPPDVPFINAVGALQDL 117
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE- 234
C+ P Y+ G PH ++F++ V +KE G+ ++KK AK+EAA ML +
Sbjct: 118 CIENNLQEPKYKQINEVGPPHAKIFSIQCTVTTFKETGIARTKKQAKQEAAKKMLDKINE 177
Query: 235 -TVPIEIPEKKQGEDVDE-KGESNGLKHTHDSTFLTPQILK-----KIQQYH----TVFS 283
T + I K D+DE K S K + + P K KI +YH +F
Sbjct: 178 LTNGLNIGTDK---DLDERKDHSQIAKARYPALSRLPTSRKINLGVKISEYHLQFKNLFD 234
Query: 284 QKTKGPLLEKLLS--TRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQ 341
+ + L EK S +RN ED ++EDL ++L+ ++ + ++ + F S+L+
Sbjct: 235 TEMQKELTEKFTSIISRNESHISED---FVEDLLNKLQDVLAIMGLDVTTSV--FPSILE 289
>gi|332027530|gb|EGI67607.1| RISC-loading complex subunit tarbp2 [Acromyrmex echinatior]
Length = 343
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 25/175 (14%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QE+++++G P Y+LI G + F YR++ S S A G+G+ KK+AK
Sbjct: 3 KTPVSILQEMMAKQGMTPDYKLIHDGGGRHVNTFTYRVTCDSLS----ATGTGRCKKDAK 58
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------------NPVGQLQEA 175
H AAK++L ++ + + N V P N VG+LQE
Sbjct: 59 HEAAKAMLTEIAAHRNYPQL-PAANTPTVSPPKSPFHSVPLPPKIANIPFVNAVGELQEL 117
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
C P Y + G PH ++FT+ V+ ++E+G+ +KK AK +AA M+
Sbjct: 118 CAENNLHEPEYFLIQDVGPPHAKIFTIRCKVSNFEEDGIATTKKQAKHDAAKRMV 172
>gi|380029320|ref|XP_003698324.1| PREDICTED: probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Apis florea]
Length = 335
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 36/254 (14%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++TPVS++QE++ + P YELI G + +F YR+ A G G+SKK+A
Sbjct: 2 NKTPVSILQEMMVKNKITPNYELIHDGGGTHMNVFAYRVKCDD----LTASGIGRSKKDA 57
Query: 135 KHNAAKSVLD---------QLIGRDDEK-----LMCQKENLFKVEP-----NPVGQLQEA 175
KH AAK++L+ QL + L + ++ P N VG LQ+
Sbjct: 58 KHEAAKAMLEIIATHRGYLQLPASPAQSPVRTPLPPTIPEIPRIPPDVPFVNAVGALQDL 117
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLE 234
C P Y+ G PH ++FT+ V +KE G+ K+KK AK+EAA ML K +
Sbjct: 118 CAENNLQDPKYQQISDIGPPHAKIFTIECEVATFKEIGVAKTKKQAKQEAAKKMLDKLTD 177
Query: 235 TVP-IEIPEKKQGEDVDEK-GESNGL---KHTHDSTFLTPQILK---KIQQYHTVFSQK- 285
VP + K+ +++D+K +SN + ++T S T + + K+ +YH F +
Sbjct: 178 LVPDLSDMIDKEKQNIDQKMDDSNKIAKAQYTKLSKLPTAKKINLGVKLSEYHIQFKSQY 237
Query: 286 ---TKGPLLEKLLS 296
+ ++E++LS
Sbjct: 238 DDEKRKEIIERILS 251
>gi|307191761|gb|EFN75203.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Harpegnathos saltator]
Length = 336
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 153/353 (43%), Gaps = 82/353 (23%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++TPVS++QE++ ++G+ P YELI G + F Y+++ + A G+G+ KK+A
Sbjct: 2 NKTPVSILQEMMVKKGSVPNYELIHDGGGTHINTFTYKVTCDG----FTATGTGRCKKDA 57
Query: 135 KHNAAKSVLDQL-IGRDDEKLMCQKENLFKVEPNP------------------VGQLQEA 175
KH AA ++L + R+ +L P P +G LQ+
Sbjct: 58 KHEAANAMLTTIATHRNYPQLPASPATSPVRTPMPDSLPMSPRMPANIPFVNTIGALQDL 117
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
C P Y G PH R+FT+ V+ + E+G+G +KK AK +AA M+ + +
Sbjct: 118 CAENNLQEPEYVPVSDVGPPHARVFTIRCVVSNFSEDGVGTTKKQAKHDAAKKMVDKINS 177
Query: 236 VPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQ--ILKK----------IQQYHTV-- 281
+ + K + ++ E+N S F + ILKK + +YHTV
Sbjct: 178 L---VNGKLKSLSIENDPENNK-DFELSSEFAKSKYCILKKLTRKTNLGIRLTEYHTVTR 233
Query: 282 ----------------------FSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELK 319
FSQ T LLEKL NL+ EV + L L+D
Sbjct: 234 DNLDTDLRHKILEELCNLIPSDFSQVTDELLLEKLSKLGNLLSEV-NIALILQD------ 286
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
F+D +K ++QL T P + G G + + EA ++AL ++
Sbjct: 287 --ARFIDTRNYTK------IMQLDTCPPIIQIGIGKT----EAEATFKALSYM 327
>gi|444513890|gb|ELV10475.1| RISC-loading complex subunit TARBP2 [Tupaia chinensis]
Length = 380
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 160/371 (43%), Gaps = 77/371 (20%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLI--GRDDEKLMCQKENLFKVEPNPVGQLQEA 175
G SKK A KH S+L+ + R M + + E NPVG LQE
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSRSPHMEMQPPVSPQQSECNPVGALQEL 135
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE------------------------ 211
+ + W P Y + +G H + FT+ V + E
Sbjct: 136 VVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGPQVHGQVLSSPFQSTASGRTLN 195
Query: 212 ----------------------EGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
G G SKK+AKR AA ML + TVP++ + + E
Sbjct: 196 PNVLRWKALGLLGSFLQQLSLHTGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGHEAEPD 255
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVE 305
D+ H S + ++ + + + EK+LS R+ + +
Sbjct: 256 DD----------HFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALG 305
Query: 306 DPIL-YLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEA 364
L +LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA
Sbjct: 306 PACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEA 365
Query: 365 VYRALDFLQIM 375
RAL +L+IM
Sbjct: 366 ARRALQYLKIM 376
>gi|350414987|ref|XP_003490495.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Bombus impatiens]
Length = 332
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 23/175 (13%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D+TPVS++ E++++ P YELI G + F YR++ A G G+SKK+A
Sbjct: 2 DKTPVSILHEIMAKNLVTPNYELIHDGGGTHINTFTYRVTCEG----LTATGIGRSKKDA 57
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKV-----------------EP--NPVGQLQEA 175
KH AAK++L+ + + V EP N VG LQ+
Sbjct: 58 KHEAAKAMLEAIAAHRGYLQLPASPAQSSVRTPLPPTIPEVKRTPPDEPFINAVGALQDL 117
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
C+ P Y+ G PH ++F++ V +KE G+ ++KK AK+EAA ML
Sbjct: 118 CIENNLQEPKYKQINEVGPPHAKIFSIQCTVTTFKETGIARTKKQAKQEAAKKML 172
>gi|109096950|ref|XP_001106036.1| PREDICTED: RISC-loading complex subunit TARBP2 [Macaca mulatta]
Length = 366
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 157/357 (43%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQ-------------------------------- 145
G SKK A KH S+L+
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPIFTAAAAATPVP 135
Query: 146 --LIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ R + + + E NPVG + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMELQPPVSPQQFEGNPVGGSAGLVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTR-----NLIDEVEDPILYLEDLSDEL 318
S + ++ + + + EK+LS R +L L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>gi|426224364|ref|XP_004006341.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Ovis
aries]
Length = 345
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 154/349 (44%), Gaps = 64/349 (18%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G G SKK AK
Sbjct: 8 KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQGPSKKAAK 63
Query: 136 HNAAKSVLDQLIGRD----------------------------------DEKLMCQKENL 161
H AA+ L L G + + +
Sbjct: 64 HKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTAAAAATPVPSAVPTRSSP 123
Query: 162 FKVEPNPVGQLQEAC----------MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE 211
+ +P PV Q C + + W P Y + +G H + FT+ V + E
Sbjct: 124 MEAQP-PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIE 182
Query: 212 EGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQI 271
G G SKK+AKR AA ML + TVP++ + + E D+ H S + ++
Sbjct: 183 IGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPEDD----------HFSIGVGSRL 232
Query: 272 LKKIQQYHTVFSQKTKGPLLEKLLSTR-----NLIDEVEDPILYLEDLSDELKYRVSFVD 326
+ + + E++LS R +L L +LS+E + VS++D
Sbjct: 233 DGLRNRGPGCTWDSLRNSVGERILSLRSCSLGSLGALGPACCSVLSELSEEQAFHVSYLD 292
Query: 327 IEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
IEE S + Q L++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 293 IEELSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIM 341
>gi|148681491|gb|EDL13438.1| mCG2026 [Mus musculus]
Length = 221
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 173 QEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKF 232
QE + + W P Y + +G H + FT+ V + E G G SKK+AKR AA+ ML
Sbjct: 20 QELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAVKMLLR 79
Query: 233 LETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLE 292
+ TVP++ + + E D+ H S ++ ++ + + + E
Sbjct: 80 VHTVPLDARDGNEAEPDDD----------HFSIGVSSRLDGLRNRGPGCTWDSLRNSVGE 129
Query: 293 KLLSTRNL----IDEVEDPIL-YLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPV 347
K+LS R+ + + L +LS+E + VS++DIEE S + Q L++L+T P
Sbjct: 130 KILSLRSCSVGSLGALGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPA 189
Query: 348 TVFCGTGASIEVAKIEAVYRALDFLQIM 375
TV G+ + E A+ +A + AL +L+IM
Sbjct: 190 TVCYGSATTREAARGDAAHSALQYLRIM 217
>gi|149639721|ref|XP_001515387.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Ornithorhynchus
anatinus]
Length = 397
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 140/316 (44%), Gaps = 41/316 (12%)
Query: 69 MRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
M N +TP+ L+ E + G P +E + EG I++P F +++++ G G
Sbjct: 110 MITNKQGKTPIQLLHEYGVKTGFVPVFECEKAEGQIHQPNFTFKVTIGK----LTCTGEG 165
Query: 129 KSKKEAKHNAAKSVLDQLIGRDDEKLM---------CQKENLFKVEPNPVGQLQEACMTR 179
KK AKH AA++ ++QL L C++ K +P+ LQE M
Sbjct: 166 PKKKVAKHKAAEAAINQLKANSGISLSVSGPSVPDSCKQPQKPK---SPINSLQELAMRC 222
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE 239
W P Y + +G H++ F + + Y E G G SKK AK AA +L L TV
Sbjct: 223 GWSLPEYTLSKESGPAHKKEFIMNCKLETYVETGTGASKKQAKESAAEKLLAKLHTV--T 280
Query: 240 IPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN 299
+KK V G N L T D+ + KK+
Sbjct: 281 AGQKK--SLVKPIG--NNLGCTWDA--MKNSSGKKVTLLKKSLLSLPN------------ 322
Query: 300 LIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEV 359
D I L ++++E + V+++DIEE S +Q L +L+++P+TV GTG S
Sbjct: 323 -----TDYIQLLGEVAEEQGFSVTYLDIEELSINGQYQCLAELSSSPITVCHGTGISCSN 377
Query: 360 AKIEAVYRALDFLQIM 375
A A + AL +L+IM
Sbjct: 378 AHTNAAHNALQYLKIM 393
>gi|348519647|ref|XP_003447341.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog [Oreochromis
niloticus]
Length = 300
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 153/336 (45%), Gaps = 49/336 (14%)
Query: 47 IKQIPKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINE 106
+ Q P V + + L+ E + N+G +TP+ ++ E ++ G P Y + + EG ++
Sbjct: 1 MSQSPAVKSEDASLDTN---ESQKSNSG-KTPIQILHEYGTKSGNLPVYVMERAEGEAHQ 56
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL---------IGRDDEKLMCQ 157
P F + +++ S IG G SKK AKH AA++ L + G+ D +
Sbjct: 57 PSFVFSVTVGDVS----GIGQGPSKKAAKHQAAEAALKAMNIDAGVMNVPGKSDSNGVAT 112
Query: 158 KENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKS 217
+ N PN VG LQE + R W P Y G PH+R FTV + E+G+G S
Sbjct: 113 ETN---NHPNSVGLLQELALQRGWHLPEYTVLTEAGPPHKREFTVICRLESLSEKGVGNS 169
Query: 218 KKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQ 277
KK AK+ AA ++ L++ L + T+ P+ + +
Sbjct: 170 KKAAKKAAAEKIVAKLQS----------------------LSGCSEITW-GPKPSVRFEN 206
Query: 278 YHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQ 337
++K LL L D I + DLS E + V++ DI+E + +Q
Sbjct: 207 LRNSTAEKI------SLLRRNPLSIPNTDYIQMMLDLSTEQGFEVTYFDIDELTVNGQYQ 260
Query: 338 SLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQ 373
L +L+TTPVTV GTG S A +A + AL +++
Sbjct: 261 CLAELSTTPVTVCHGTGISCSNAHNDAAHSALQYIK 296
>gi|322797373|gb|EFZ19485.1| hypothetical protein SINV_11443 [Solenopsis invicta]
Length = 345
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 26/176 (14%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TPVS++QE++ ++G P Y+LI G + F YR+S + A G+G+ KK+AK
Sbjct: 3 KTPVSILQEMMVKQGMIPDYDLIHDGGGRHVNTFTYRVSCDGLN----ATGTGRCKKDAK 58
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVEP---------------------NPVGQLQE 174
H AAK++L + I + N V P N VG+LQE
Sbjct: 59 HEAAKAMLTE-IAKHRNYPQLPAANTPTVSPSRSPFHSAPLPPRLPSNVPFFNAVGELQE 117
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
C P Y + G PH R+FT+ ++ ++E+G +KK AK +AA M+
Sbjct: 118 LCAINNLQEPEYLLIKDIGPPHARIFTLRCKISNFEEDGTATTKKQAKHDAAKKMV 173
>gi|355723251|gb|AES07832.1| TAR RNA binding protein 2 [Mustela putorius furo]
Length = 223
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 107/216 (49%), Gaps = 15/216 (6%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 74
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + TVP++ + + E D+ H S + ++ +
Sbjct: 75 AAAKMLLRVHTVPLDARDGNEAEPDDD----------HFSIGVGSRLDGLRNRGPGCTWD 124
Query: 285 KTKGPLLEKLLSTRNLIDEVEDPI-----LYLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
+ + EK+LS R+ + L +LS+E + VS++DIEE S + Q L
Sbjct: 125 SLRNSVGEKILSLRSCSLGALGALGPACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCL 184
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 185 VELSTQPATVCHGSATTREAARGEAARRALQYLKIM 220
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 78 PVSLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
PV +QEL+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK
Sbjct: 18 PVGALQELVVQKGWRLPEYTVTQESG----PAHRKEFTMTCRVERFIEIGSGTSKKLAKR 73
Query: 137 NAAKSVL 143
NAA +L
Sbjct: 74 NAAAKML 80
>gi|256074989|ref|XP_002573804.1| tar rna binding protein (trbp) [Schistosoma mansoni]
gi|360043383|emb|CCD78796.1| putative tar rna binding protein (trbp) [Schistosoma mansoni]
Length = 356
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 151/345 (43%), Gaps = 60/345 (17%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
RTP+S++QE+ ++G P YEL+ EG ++EP++ + + + + A G SKK AK
Sbjct: 8 RTPISILQEVCVKKGITPIYELVSNEGPVHEPLYVFLCT----AGPFSATSKGASKKRAK 63
Query: 136 HNAAKSVLDQLIGR----DDEKLMCQKENLFKV--------------------------- 164
H A+ +L +++ + EK Q ++ V
Sbjct: 64 HQASYLILLKMLNSRLLTESEKYTLQDIHIAAVNVLGSDFMDSLDDIELDGLPNKIKQEE 123
Query: 165 EPNPVGQLQEACMTRKWPPPVYE---TEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIA 221
E N VG+LQ+ C WPPP YE ++T P ++ + + G G SKK A
Sbjct: 124 EGNFVGRLQDLCQKNTWPPPSYEFLTIPQST--PSGNEYSCKVRLWKWTHTGFGNSKKSA 181
Query: 222 KREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTV 281
KR AAL +L + + IP++ +D++E E+ L D + L K ++
Sbjct: 182 KRRAALGLLDNIIKNNLTIPQEAL-DDMEE--ETLSLLDKQDQSNL------KENKFENE 232
Query: 282 FSQKTKGPLLEKLLSTR---------NLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSK 332
+ +T L L + + + D++++ YL+++ D K V + + S+
Sbjct: 233 ATARTSSKALRGLWNRKGDKIRVPPIDNPDKMDNACEYLQEICDCAKITVVYTYVPANSQ 292
Query: 333 ADGFQSLLQLTTTPVTVF-CGTGASIEVAKIEAVYRALDFLQIMN 376
+L+T P V ++ A+ A R + FL+ M+
Sbjct: 293 G-MICCFAELSTLPPHVIKSQLSPNLASARKNAARRCILFLKAMS 336
>gi|119617124|gb|EAW96718.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens]
gi|119617125|gb|EAW96719.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens]
Length = 222
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 13 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 72
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEK------GESNGLKH-----THDSTFLTPQILK 273
AA ML + TVP++ + + E D+ +GL++ T DS L + +
Sbjct: 73 AAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDS--LRNSVGE 130
Query: 274 KIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKS 331
KI ++ S GP ++LS +LS+E + VS++DIEE S
Sbjct: 131 KILSLRSCSLGSLGALGPACCRVLS----------------ELSEEQAFHVSYLDIEELS 174
Query: 332 KADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 175 LSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 218
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 78 PVSLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
PV +QEL+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK
Sbjct: 16 PVGALQELVVQKGWRLPEYTVTQESG----PAHRKEFTMTCRVERFIEIGSGTSKKLAKR 71
Query: 137 NAAKSVL 143
NAA +L
Sbjct: 72 NAAAKML 78
>gi|345488428|ref|XP_003425906.1| PREDICTED: hypothetical protein LOC100677953 [Nasonia vitripennis]
Length = 323
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 90/156 (57%), Gaps = 7/156 (4%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++ PV+++QE+ ++ G+AP YEL E PIF +++S A GSGKSKK+A
Sbjct: 4 EKNPVTILQEMEAKIGSAPIYELCPSELLTVPPIFTFKVSCNG----LTAYGSGKSKKDA 59
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGL 194
K NAA+++++++ R+ ++ + N + +L + C + P+Y+ E TG
Sbjct: 60 KQNAAQNMIEKMGQRN---IVMKPAAAASARDNSIQELMKLCNKLQLEEPIYKELERTGP 116
Query: 195 PHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
PH +++ V+ ++++G ++K+ +K+ AA M+
Sbjct: 117 PHAPVYSTLCTVSKFQQDGTARTKRQSKQIAARKMI 152
>gi|240848923|ref|NP_001155644.1| protein kinase, interferon inducible double stranded RNA dependent
activator-like [Acyrthosiphon pisum]
gi|239790447|dbj|BAH71784.1| ACYPI005748 [Acyrthosiphon pisum]
Length = 339
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 19/180 (10%)
Query: 70 RLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGK 129
+++ ++TP S++QE ++ P+Y+LI + ++ FKY ++L YVA+G G
Sbjct: 15 HISSLNKTPASIVQEYAAKNRLVPQYDLIHNGVSHSKVSFKYSLTLDD----YVAVGDGS 70
Query: 130 SKKEAKHNAAKSVLD-------QLIGRD------DEKLMCQKENLFKVEPNPVGQLQEAC 176
SKKEAKH AA ++L +L+ D D ++ +N KV N VGQL + C
Sbjct: 71 SKKEAKHVAALNLLKIMIEDKPELLNTDFKQWDFDNHVVSPFDNNIKV--NAVGQLNDIC 128
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
K P + G H ++FT+ +V E K+KK AK AA+ M+ L ++
Sbjct: 129 TNNKLGLPEFNLVREEGQAHAKLFTISCHVAKMIETATHKTKKQAKHLAAVQMVNKLMSI 188
>gi|425626936|gb|AFX89026.1| R2D2 isoform a [Mayetiola destructor]
Length = 337
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 74 GDRTPVSLMQEL-LSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
++TPVS++QEL + + P YE IQ E + +F Y + E+ + A GSG+SK+
Sbjct: 2 AEKTPVSVLQELCVQENASVPMYEPIQHES--DPKMFAYVV----EAFGFCAKGSGRSKR 55
Query: 133 EAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNP------VGQLQEACMTRKWPPPVY 186
EAKH A+ ++L+ L D K K N+ P P VG L + C+ R WP ++
Sbjct: 56 EAKHEASANLLEILKQIDRFK---SKFNVVPQTPRPSSETDAVGTLLDICVQRNWPIALF 112
Query: 187 ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
E + G PH FT+ ++ + G +KK AK+ AA ML ++ +
Sbjct: 113 EEMQAYGEPHRPRFTIVCSLSSIQRTGTSTTKKSAKQLAAKAMLDVVQNI 162
>gi|148695266|gb|EDL27213.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_b [Mus musculus]
Length = 210
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+G LQE + W P Y + G H+R +T + + E G G SKK AKR AA
Sbjct: 23 NPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA 82
Query: 227 LNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQK 285
KFL PE + +N + H+ T +H++ S
Sbjct: 83 E---KFLAKFSNISPE-------NHISLTNVVGHSLGCT------------WHSLRNSPG 120
Query: 286 TKGPLLEK-LLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTT 344
K LL++ LLS N D I L +++ E + ++++DIEE S +Q L +L+T
Sbjct: 121 EKINLLKRSLLSLPN-----TDYIQLLSEIASEQGFNITYLDIEELSANGQYQCLAELST 175
Query: 345 TPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+P+TV G+G S A+ +A + AL +L+I+
Sbjct: 176 SPITVCHGSGISCGNAQSDAAHNALQYLKII 206
>gi|109097111|ref|XP_001110800.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Macaca mulatta]
Length = 251
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 124/278 (44%), Gaps = 43/278 (15%)
Query: 93 PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDD- 151
P YE + + I+ P F +R+++ G G KK KH AA++ ++ I +D+
Sbjct: 7 PVYECERSDVQIHVPTFTFRVTVGD----ITCRGEGTGKKLVKHRAAEAAIN--IWKDNA 60
Query: 152 -------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
+ LM K + NPVG LQE W P Y + G H+R +T
Sbjct: 61 SICFAVPDPLMSDPSKQPKNQLNPVGSLQELAFHHGWRRPEYTLSQEGGPAHKREYTTVC 120
Query: 205 YVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS 264
+ + E G G SKK AKR AA KFL PE + +N + H+
Sbjct: 121 RLEAFMETGKGASKKQAKRNAA---EKFLAKFSNISPE-------NHISLTNVVGHSLGC 170
Query: 265 TFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDPILYLEDLSDELKYRV 322
T +H++ S K LL++ LLS N D I L +++ E + +
Sbjct: 171 T------------WHSMRNSPGEKINLLKRSLLSIPN-----TDYIQPLSEIAKEQGFNI 213
Query: 323 SFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVA 360
+++DI++ S +Q L +L+T P+TV G+G S A
Sbjct: 214 TYLDIDKLSANGQYQCLAELSTNPITVCHGSGISCGNA 251
>gi|149022335|gb|EDL79229.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_a [Rattus norvegicus]
Length = 230
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+G LQE + W P Y + G H+R +T + + E G G SKK AKR AA
Sbjct: 43 NPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA 102
Query: 227 LNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQK 285
KFL PE + +N + H+ T +H++ S
Sbjct: 103 E---KFLAKFSNISPE-------NHISLTNVVGHSLGCT------------WHSLRNSPG 140
Query: 286 TKGPLLEK-LLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTT 344
K LL++ LLS N D I L +++ E + ++++DIEE S +Q L +L+T
Sbjct: 141 EKINLLKRSLLSLPN-----TDYIQLLSEIAKEQGFSITYLDIEELSANGQYQCLAELST 195
Query: 345 TPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+P+TV G+G S A+ +A + AL +L+I+
Sbjct: 196 SPITVCHGSGISCGNAQSDAAHNALQYLKII 226
>gi|194382068|dbj|BAG58789.1| unnamed protein product [Homo sapiens]
Length = 200
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+G LQE + W P Y + G H+R +T + + E G G SKK AKR AA
Sbjct: 13 NPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA 72
Query: 227 LNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQK 285
KFL PE + +N + H+ T +H++ S
Sbjct: 73 ---EKFLAKFSNISPE-------NHISLTNVVGHSLGCT------------WHSLRNSPG 110
Query: 286 TKGPLLEK-LLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTT 344
K LL++ LLS N D I L +++ E + ++++DI+E S +Q L +L+T
Sbjct: 111 EKINLLKRSLLSIPN-----TDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELST 165
Query: 345 TPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+P+TV G+G S A+ +A + AL +L+I+
Sbjct: 166 SPITVCHGSGISCGNAQSDAAHNALQYLKII 196
>gi|345791598|ref|XP_003433515.1| PREDICTED: LOW QUALITY PROTEIN: RISC-loading complex subunit TARBP2
[Canis lupus familiaris]
Length = 366
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 156/358 (43%), Gaps = 65/358 (18%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD------------DEKLMCQKENL------------- 161
G SKK AKH AA+ L L G E++
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVP 135
Query: 162 ---------FKVEPNPVGQLQEAC----------MTRKWPPPVYETEETTGLPHERMFTV 202
+ +P PV Q C + + W P Y + +G H + FT+
Sbjct: 136 SAVPTRSPPMEAQP-PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTM 194
Query: 203 CAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTH 262
V G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 195 TCRVERSCXIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGTEAEPDDD----------H 244
Query: 263 DSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPI-----LYLEDLSDE 317
S + ++ + + + EK+LS R+ + L +LS+E
Sbjct: 245 FSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGALGALGPACCSVLSELSEE 304
Query: 318 LKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 305 QAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
>gi|429137923|gb|AFZ74932.1| R2d2 [Aphis glycines]
Length = 338
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 19/180 (10%)
Query: 70 RLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGK 129
+++ ++TP S++QE ++ P+Y+LI + ++ FKY +++ YVA+G G
Sbjct: 15 HISSLNKTPASIVQEYAAKNRLVPQYDLIHNGISHSKVSFKYSLNMGD----YVAVGEGS 70
Query: 130 SKKEAKHNAAKSVLD-------QLIGRD------DEKLMCQKENLFKVEPNPVGQLQEAC 176
SKKEAKH AA ++L QL+ D D ++ +N KV N VGQL + C
Sbjct: 71 SKKEAKHVAALNLLKLMIDDKPQLLNTDFKQWDFDNHVVSPFDNNIKV--NAVGQLNDIC 128
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
+ P + G H ++FT+ V E + K+KK AK AA+ M+ L ++
Sbjct: 129 TNNRLGLPEFNLVREEGQAHAKLFTMSCQVAKMIETAIHKTKKQAKHLAAVQMVNRLMSI 188
>gi|427793309|gb|JAA62106.1| Putative staufen, partial [Rhipicephalus pulchellus]
Length = 202
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 101/226 (44%), Gaps = 43/226 (19%)
Query: 170 GQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM 229
G+LQE CM +W PP YET GLPHER F + VN E G GKSK++AKR+AA M
Sbjct: 1 GELQELCMKLRWRPPFYETVIEDGLPHERTFGISCLVNNLNEMGKGKSKRLAKRQAAKKM 60
Query: 230 LKFLETVP---IEIPEKKQGED---------------VDEKGESNGLKHTHDSTFLTPQI 271
++ ++ V + E K GE + E GLK + S LTP+
Sbjct: 61 IELIKNVQNGLLNGEEDKFGESGLNSVPGGLGPCSTVLQEAKCYMGLKEQNISA-LTPRH 119
Query: 272 LKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKS 331
+++ Q Q + G L L T +L D + L +++D
Sbjct: 120 SQQVGQLLRQL-QASDGARLTSLQGT-SLSTAGIDYVGLLREIADXXX------------ 165
Query: 332 KADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
LT+ P+ V GT + E A++ A AL +L+IM +
Sbjct: 166 ----------LTSLPLAVCFGTADTPEQAQVAAARCALQYLKIMTK 201
>gi|195356071|ref|XP_002044505.1| GM13239 [Drosophila sechellia]
gi|194131807|gb|EDW53741.1| GM13239 [Drosophila sechellia]
Length = 101
Score = 79.0 bits (193), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 11/106 (10%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPP 184
+G+G+SK+ AK+ A ++V+D+L G P+ E C+ +WPPP
Sbjct: 1 MGAGRSKEAAKNAADRAVIDKLSGAQ-----------LPESPSSSAGPSEMCVQLRWPPP 49
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
+YETE GLPHER+FT+ V ++ G G +KKIAKR AA +M
Sbjct: 50 LYETEAEVGLPHERVFTIACSVLEHRVMGKGTTKKIAKRLAAHSMF 95
>gi|113912024|gb|AAI22654.1| TAR (HIV-1) RNA binding protein 2 [Bos taurus]
Length = 319
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 132/309 (42%), Gaps = 63/309 (20%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVPTRSSPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPEDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTR-----NLIDEVEDPILYLEDLSDEL 318
S + ++ + + + EK+LS R +L L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDI 327
+ VS++DI
Sbjct: 306 AFHVSYLDI 314
>gi|383864643|ref|XP_003707787.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A-like [Megachile
rotundata]
Length = 346
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 154/365 (42%), Gaps = 88/365 (24%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSE--SRLYVAIGSGKSKKE 133
+TPV ++Q++ + GT P Y I+I I +R T++ R Y A G+ +KKE
Sbjct: 3 KTPVVMLQDISMKLGTLPVY--IEISSVIGT----HRNQFTTKVSWRNYSAEGTADNKKE 56
Query: 134 AKHNAAKSVLDQLIGRDD--EKLMCQKENL---FKVEP---------------------N 167
AK NAAK +L L+ ++ EK++ N+ FK+ N
Sbjct: 57 AKQNAAKKMLSLLLLSNEIPEKILLSIPNMKTDFKLNNSVITNDVCSVNSSDSDTTKFMN 116
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
VG L E C PVYE TG H MFTV ++ ++EG +K+ AK +AA
Sbjct: 117 YVGLLNEYCQGHNLSSPVYENVGMTGPSHLPMFTVSCAIDSIRQEGCANTKQAAKHQAAK 176
Query: 228 NMLKFLETVP---IEIPEKKQGED----------VDE----KGESNGLKHTHDSTFLTPQ 270
+L+ LE P ++ K D VDE K + + T+ P
Sbjct: 177 KVLENLENKPCSNVKFNTKTSDMDNLNVQFMKVSVDEPKYDKLQEQKIIATYGQIRKKPV 236
Query: 271 ILK---KIQQYHTVF-------SQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELK- 319
+ K KI Y V S K K L K+ +T +D SD LK
Sbjct: 237 LFKPRIKINDYVEVLRDLCYNISMKDKNS-LSKVYNTSFSVD------------SDTLKV 283
Query: 320 --YRVSFVDIEEKSKADGFQSL-------LQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
YR IEE S F ++ L+L T PV CG G + E A A+++ L+
Sbjct: 284 IIYRAFKTTIEEIS----FNTINGDSLIGLKLDTHPVIFQCGIGRTKEQATKNALHKLLE 339
Query: 371 FLQIM 375
++ ++
Sbjct: 340 YIFLL 344
>gi|307182700|gb|EFN69824.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A-like protein [Camponotus floridanus]
Length = 364
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 166/367 (45%), Gaps = 74/367 (20%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++P+SL+QEL S++G P Y + ++ F R+ + + + A G G SKK+AK
Sbjct: 3 KSPISLLQELGSKQGYVPIYNYVSVKKVGIYDRFVCRV----DCKEFNAEGEGNSKKDAK 58
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKEN-----------------LFKVEPNP-----VGQLQ 173
HNAA+ +L L +++ ++ N K + +P VG LQ
Sbjct: 59 HNAAEKMLSLLAAKNEISVLSPIANKVQTSMPIKTYESILPSTMKTQSSPKIVNYVGLLQ 118
Query: 174 EACMTRKWPPP--VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
E C+ ++ VY+ + G H +MFT+ + E+G KKIAK+EAA N+L+
Sbjct: 119 EFCVQQELLASNIVYKVVDERGPDHMKMFTIEVSIGSICEKGSASCKKIAKQEAAKNLLQ 178
Query: 232 FL-------------------------ETVP---IEIPEKKQGE------DVDEKGESNG 257
L ET+ IEI E + ++ ++ ++
Sbjct: 179 HLHPDVKELLERNNEKNNKASSKEMLQETIQKLGIEISECVVSKPTLPVANLSKEAQTLY 238
Query: 258 LKHTHDSTFLTPQ--ILKKIQQ-YHTVFSQKTKGPLLEKLLSTRN-LID--EVEDPILYL 311
+K T+ +T Q +LK + + +S K + EK+ R+ I+ +V+D +
Sbjct: 239 MKRTNKECKVTRQDFLLKNLHDLFERTYSTKISFNMREKMQIVRDKYINRADVKDVKEVV 298
Query: 312 EDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRA--- 368
+D++ L+ ++ + + +K L+L++ P+ G G + + A+I+A+Y
Sbjct: 299 QDIARALEIKIEKIILPSITKGSIIS--LRLSSQPIITQLGMGETEDKAEIQAMYNVIVT 356
Query: 369 -LDFLQI 374
L FL I
Sbjct: 357 ILTFLNI 363
>gi|332019072|gb|EGI59604.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Acromyrmex echinatior]
Length = 358
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 90/195 (46%), Gaps = 42/195 (21%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++ ++L+QEL +RG P Y E IN K I + ++L + G+G SKKEAK
Sbjct: 3 KSEINLLQELSIKRGFTPIYNFS--EKNINYQ--KQFICNVACAKL-ITHGTGNSKKEAK 57
Query: 136 HNAAKSVLDQL------------------------IGRDDEKLMCQKENL---------- 161
HNAAK++L L I ++ EK+ N+
Sbjct: 58 HNAAKNMLSLLATNHNEIPLSVVIPQVVTSPIVTNISQNPEKVCNTSSNVPFRKEDNSNK 117
Query: 162 -FKVEPNPVGQLQEACMTRKWPPP--VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
F V N +G LQE C R+ P Y+ GLPH+++FTV + E G G+ K
Sbjct: 118 QFTVGYNYIGMLQEFCQQRQIPTKDIQYDLIYDEGLPHKKIFTVKVSLGSLCERGTGQCK 177
Query: 219 KIAKREAALNMLKFL 233
K AK+EAA ML L
Sbjct: 178 KSAKQEAAKKMLLHL 192
>gi|322798626|gb|EFZ20230.1| hypothetical protein SINV_08208 [Solenopsis invicta]
Length = 375
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 27/186 (14%)
Query: 73 TGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
+ +++ ++++QELL ++G P Y N +F +S + A G G SKK
Sbjct: 2 SNNKSVINMLQELLVKKGAVPLYTFTNKRINENRTLFVCNVSYNK----FYASGEGNSKK 57
Query: 133 EAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP---------------------NPVGQ 171
EAKH AA+++L L ++ ++ K ++ ++P N +G
Sbjct: 58 EAKHTAAENMLSLLEANNEVSILADKSSVANIKPKSFEMNEKISSPSCQPSTPVCNYIGM 117
Query: 172 LQEACMTRKWPPP--VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM 229
LQE C K P Y+ G H+++FT+ + K G G KK AK+EAA +
Sbjct: 118 LQELCQQEKINPKEIHYKDLYQDGQDHQKIFTIEVILGSKKATGTGPCKKSAKQEAARKL 177
Query: 230 LKFLET 235
L L +
Sbjct: 178 LMSLNS 183
>gi|344268337|ref|XP_003406017.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Loxodonta africana]
Length = 517
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 115/263 (43%), Gaps = 41/263 (15%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 194 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 249
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 250 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 309
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVPIEIPEKKQGED 248
+ G H+R +T + + E G G SKK AKR AA L KF P
Sbjct: 310 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPD---------- 359
Query: 249 VDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVED 306
+ +N + H+ T +H++ S K LL++ LLS N+ D
Sbjct: 360 -NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPNM-----D 401
Query: 307 PILYLEDLSDELKYRVSFVDIEE 329
I L +++ E + V+++DIEE
Sbjct: 402 YIQLLSEIAKEQGFNVTYLDIEE 424
>gi|395744363|ref|XP_002823375.2| PREDICTED: RISC-loading complex subunit TARBP2 [Pongo abelii]
Length = 364
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 31/216 (14%)
Query: 173 QEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKF 232
+E + + W P Y + +G H + FT+ V + E G G SKK+AKR AA ML
Sbjct: 163 KELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVEHFIEIGSGTSKKLAKRNAAAKMLLR 222
Query: 233 LETVPIEIPEKKQGEDVDEK------GESNGLKH-----THDSTFLTPQILKKIQQYH-- 279
+ TVP++ + + E D+ +GL++ T DS L + +KI
Sbjct: 223 VHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDS--LRNSVGEKILSLRSC 280
Query: 280 TVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
++ S GP ++LS +LS+E + VS++DIEE S + Q L
Sbjct: 281 SLGSLGALGPACCRVLS----------------ELSEEQAFHVSYLDIEELSLSGLCQCL 324
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 325 VELSTQPATVCHGSATTREAARGEAARRALQYLKIM 360
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>gi|344252498|gb|EGW08602.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Cricetulus griseus]
Length = 212
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + M K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPSMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVP 237
+ G H+R +T + + E G G SKK AKR AA L KF P
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 197
>gi|47218120|emb|CAG09992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 302
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 136/305 (44%), Gaps = 39/305 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E R G P Y + + EG ++P F + + + G G SKK AK
Sbjct: 29 KTPIQILHEYGIRSGVLPVYVMERAEGEAHQPSFVFTVKIQE----VTCTGQGPSKKAAK 84
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVEP----NPVGQLQEACMTRKWPPPVYETEET 191
H AA + LD L ++ + K + VEP N VG LQE + R WP P Y
Sbjct: 85 HLAAAAALDVLQINVEQLNVPVKSDRNGVEPDHHPNSVGILQELALQRGWPLPEYTLLTE 144
Query: 192 TGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDE 251
G PH R FTV + E +G SKK AK+ AA M+ L+++
Sbjct: 145 AGPPHMREFTVSCRLESLSETAIGSSKKAAKKSAAEKMVARLQSL--------------- 189
Query: 252 KGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVE-DPILY 310
S G + T TP+ + +K L RN + + D I
Sbjct: 190 ---SGGSEIT-----WTPKASVLVGNLRKCSGEKVS-------LLRRNPLSALHTDYIQM 234
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+ +LS E + V++ +I+E + +Q L +L+T+PV V G G S A A + AL
Sbjct: 235 MLELSKEQGFEVTYFNIDELTVNGLYQCLAELSTSPVVVCHGVGVSCSNAHNAAAHSALQ 294
Query: 371 FLQIM 375
+++IM
Sbjct: 295 YIKIM 299
>gi|449513317|ref|XP_004175519.1| PREDICTED: LOW QUALITY PROTEIN: RISC-loading complex subunit
TARBP2, partial [Taeniopygia guttata]
Length = 215
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 106/269 (39%), Gaps = 59/269 (21%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLY 122
A LE M + +TP+SL+QE +R G P Y+L++ EG ++P F +R++L
Sbjct: 4 GASLEQMVAASPGKTPISLLQEYGTRLGRTPGYDLLKAEGQAHQPNFTFRVTLGD----- 58
Query: 123 VAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWP 182
+ G + KL+ QK W
Sbjct: 59 --------------------ISCTGGTPELKLVVQK---------------------GWR 77
Query: 183 PPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPE 242
P Y + +G H + FT+ V + E G G SKK+AKR AA ML + VP+E +
Sbjct: 78 LPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAKRNAAAKMLVRIHNVPMEPRD 137
Query: 243 KKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKL--LSTRNL 300
+ E GE + T P++ + + EKL L R
Sbjct: 138 GSEAE-----GEEDQFNMT------CPRLEGLRGRAPGCTWDSLRNSAGEKLGQLRGRGG 186
Query: 301 IDEVEDPILYLEDLSDELKYRVSFVDIEE 329
L++LS+E + +S++DI E
Sbjct: 187 NPAPGGACALLQELSEEQSFAISYLDIGE 215
>gi|148672021|gb|EDL03968.1| TAR (HIV) RNA binding protein 2, isoform CRA_b [Mus musculus]
Length = 277
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 108 ECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 167
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + TVP++ + + E D+ H S ++ ++ +
Sbjct: 168 AAAKMLLRVHTVPLDARDGNEAEPDDD----------HFSIGVSSRLDGLRNRGPGCTWD 217
Query: 285 KTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
+ + EK+LS R+ + + L +LS+E + VS++DIEE S + Q L
Sbjct: 218 SLRNSVGEKILSLRSCSVGSLGALGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCL 277
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 78 PVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
PV +QEL+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK
Sbjct: 111 PVGALQELVVQKGWRLPEYMVTQESG----PAHRKEFTMTCRVERFIEIGSGTSKKLAKR 166
Query: 137 NAAKSVL 143
NAA +L
Sbjct: 167 NAAAKML 173
>gi|358334898|dbj|GAA30607.2| probable RISC-loading complex subunit BRAFLDRAFT_242885 [Clonorchis
sinensis]
Length = 336
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 123/299 (41%), Gaps = 66/299 (22%)
Query: 125 IGSGKSKKEAKHNAAKSVL------------DQLIGRDDEKLMCQKENLFKVE------- 165
+ +G SKK+AKH A+ VL D+ + RD L NL E
Sbjct: 27 LFAGASKKKAKHQASYLVLLKILASSGLSECDKAVLRD---LHYTAANLLSAEFLDSLEA 83
Query: 166 ---------------PNPVGQLQEACMTRKWPPPVYETEETTGLP---HERMFTVCAYVN 207
N VGQLQE C WPPP Y E T LP HE + A +
Sbjct: 84 DYPEFAIYRQHRDDEGNFVGQLQELCQKNMWPPPTY---EFTTLPQPVHE--YHCVAKLW 138
Query: 208 VYKEEGMGKSKKIAKREAALNMLKFLETVPIEIP----EKKQGE-----DVDEKGESNGL 258
+ EG G SKK+AKR AA +L+ + T + IP E + E D + K ++
Sbjct: 139 KWNCEGFGSSKKVAKRAAACALLERIVTQGLTIPPEALESMEEENLSLLDREAKADTRDA 198
Query: 259 KHTHDS-TFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDE 317
K ++ T L + L+ + +KG + +L S D DP L D+ +
Sbjct: 199 KLGFETETRLASKSLRWLCD--------SKGNRI-RLPSADIPADYQADPCATLADIMES 249
Query: 318 LKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGA-SIEVAKIEAVYRALDFLQIM 375
K + +K++ LLQL+TTP V S++ A+ A R + FL M
Sbjct: 250 TKL-TALYTYTRNTKSESVYCLLQLSTTPPHVIKSIACESLDEARRNAAARTILFLYAM 307
>gi|157137141|ref|XP_001663906.1| RNA binding protein, putative [Aedes aegypti]
gi|108869786|gb|EAT34011.1| AAEL013721-PA [Aedes aegypti]
Length = 289
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 15/164 (9%)
Query: 53 VSTNN-LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKY 111
V TN+ LP+EEA ++ + + + PVSL+ ELLSRRG P+Y+L+ EGA +E F Y
Sbjct: 36 VPTNDALPIEEAFKIALTGKSNTKKMPVSLLYELLSRRGITPQYDLLPREGAAHEQTFSY 95
Query: 112 RISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQ 171
R+S AIG+G+SKKEAKH AAK+++D++ D K+ P+
Sbjct: 96 RVSYPDGD----AIGTGQSKKEAKHAAAKALIDKMGINDSANKPVGKK-------TPITV 144
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
LQE +TR+ P Y+ + H+ F V+ +E MG
Sbjct: 145 LQE-VLTRRGIYPQYDFIQPDAAVHDGTFRY--RVSYQDKEAMG 185
>gi|410896914|ref|XP_003961944.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A-like [Takifugu
rubripes]
Length = 304
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 136/306 (44%), Gaps = 39/306 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E +RG P YE+ + EG + P F + + + G G SKK AK
Sbjct: 29 KTPIQILHEYGIKRGFLPVYEMEKAEGEAHHPSFVFSVKIGE----ITCTGQGHSKKAAK 84
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVE------PNPVGQLQEACMTRKWPPPVYETE 189
H AA + L+ L ++ + K + + E PN VG LQE + R W P Y
Sbjct: 85 HLAAAAALNVLQIHAEKLHVPVKSDSNRAETDHPNPPNSVGILQELALQRGWRLPQYTVL 144
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
G PH+R FTV + E +G SKK AK+ AA M+ L+++
Sbjct: 145 IEAGPPHKREFTVSCRLESLSETAIGNSKKAAKKSAAEKMVARLQSL------------- 191
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPIL 309
S G + T P +L I+ ++ LL L D I
Sbjct: 192 -----SGGSEITWSP---KPSVL--IENLRNSLGERM------SLLRGNPLSALHTDYIQ 235
Query: 310 YLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRAL 369
+ +LS E + V++ +I+E + +Q L +L+T+PV V G G S A A + AL
Sbjct: 236 MMLELSKEQGFEVTYFNIDEPTVNGMYQCLAELSTSPVVVCHGAGISCSNAHNAAAHSAL 295
Query: 370 DFLQIM 375
+++IM
Sbjct: 296 QYIKIM 301
>gi|350410402|ref|XP_003489034.1| PREDICTED: maternal effect protein staufen-like [Bombus impatiens]
Length = 760
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 143/346 (41%), Gaps = 59/346 (17%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PVSL+ E +RG +E++ G + F+ + ++ + V +G G SKK +K
Sbjct: 399 KSPVSLVHEKALKRGLPVSFEVVSEIGKPHIRTFRTKCTVGDK----VTLGEGPSKKVSK 454
Query: 136 HNAAKSVLDQL----------------IGRDDEKLMCQKENLFKV--EP----------N 167
+AA+ +L++L + R + NL KV EP N
Sbjct: 455 KHAAEFMLEELNRLPPLPETIQNRLVRVKRKPPATKKKSRNLIKVYQEPRSDSDSAEEVN 514
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PV +L + ++ PVY E G P + F + + Y +G+G +KK+AKR AA
Sbjct: 515 PVSRLDQIQQAKREKEPVYNLIEEKGAPRRKEFVMEVTMGQYSAQGIGPNKKLAKRAAAE 574
Query: 228 NMLKFLETVPIEIPEKKQGEDVDEKGES-NGLKHTHDSTFLTPQILKKIQQY----HTVF 282
+L L P+ + + + GES N + TFL + + + Q + T+
Sbjct: 575 ALLTQLGYT---KPQPQPTKPSIKTGESENAEQKPRKVTFLEDEQINETQSHPPVGGTIG 631
Query: 283 SQKTKGPLL-------------------EKLLSTRNLIDEVEDPILYLEDLSDELKYRVS 323
Q G LL E+L + P L+ LS + V
Sbjct: 632 RQLVPGLLLVDGGQESKLGSGPSVQIVAEELRGQQQQNPPTVSPKDQLKYLSQLFNFSVE 691
Query: 324 FVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRAL 369
F D + + + SL+ L+T P V G G + ++ +A +AL
Sbjct: 692 FNDFPKGAVNKEYLSLVTLSTDPPQVCHGNGPTRTASRNQAALKAL 737
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 39/209 (18%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGA---------------INEPIFK-YRISLTS 117
G+ P + L +RG A Y Q A I P F Y +
Sbjct: 270 GNLPPTVELNALAMKRGEATVYTFRQAPPAGLQQYVTNGLGHFPRIFNPRFPTYNRGFHT 329
Query: 118 ESRLYVA---------IGSGKSKKEAKHNAAKSVLDQL------------IGRDDEKLMC 156
E +LY+ IG G + + A+H+AA L+QL + +
Sbjct: 330 EPQLYLVSLKVGEREFIGRGLTGQAARHDAASKALEQLRQLPLPEEIANNCNSGENGTLG 389
Query: 157 QKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGK 216
+ ++ +PV + E + R P +E G PH R F V G G
Sbjct: 390 EAKDPIAELKSPVSLVHEKALKRGL-PVSFEVVSEIGKPHIRTFRTKCTVGDKVTLGEGP 448
Query: 217 SKKIAKREAALNMLKFLETVPIEIPEKKQ 245
SKK++K+ AA ML+ L +P +PE Q
Sbjct: 449 SKKVSKKHAAEFMLEELNRLP-PLPETIQ 476
>gi|198477035|ref|XP_002136790.1| GA22530 [Drosophila pseudoobscura pseudoobscura]
gi|198145112|gb|EDY71816.1| GA22530 [Drosophila pseudoobscura pseudoobscura]
Length = 153
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 267 LTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVD 326
LT Q K+ Q+H T LL KL T V+ P L L D++ E ++ V++VD
Sbjct: 44 LTTQHSNKVSQFHKTLKNATGKKLL-KLQKTCLKNTTVDHPKL-LTDIATENQFEVTYVD 101
Query: 327 IEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
IEEK+ FQ L+QL+T PV V GTG + A+ A AL++L+IM +
Sbjct: 102 IEEKTFTGQFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMTK 152
>gi|189233967|ref|XP_001810552.1| PREDICTED: similar to staufen [Tribolium castaneum]
gi|270015116|gb|EFA11564.1| staufen [Tribolium castaneum]
Length = 724
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 150/359 (41%), Gaps = 66/359 (18%)
Query: 71 LNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS 130
+NT ++P+SL+ E+ +R + +E++ +G + +F + + + +VA G G
Sbjct: 340 INTELKSPISLVHEIALKRNLSVTFEVLSEKGPPHMKVFVTQCRVGN----FVAEGEGNG 395
Query: 131 KKEAKHNAAKSVLDQLI------------------------GRDDEKLMCQKENLFKVEP 166
KK +K AA+ +L++L R+ K+ K + F E
Sbjct: 396 KKISKKRAAEKMLEELAKLPPLPNMHNMVHLKRKRVTNKKKTRNLIKVNMDKSSEFTEEI 455
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+ +L + K PVY E G P R F + A VN + G+G +KKIAKR AA
Sbjct: 456 NPISRLIQIQQANKEREPVYTVLEERGAPRRREFVIEASVNGHSCTGVGPNKKIAKRNAA 515
Query: 227 ---LNMLKFLETV----PIEIPEKKQ--GED------VDEKGESNGLKHTHDSTFLTPQI 271
LN L + P+ EK+ G+ V+EK ES L P I
Sbjct: 516 EALLNQLGYGNPPSNPKPVLKTEKESEIGDKTRKVTFVEEKTESTPSVGGSGGRQLVPGI 575
Query: 272 LKKIQQYHTVFSQK----------------TKGPLLEKLLSTRNLIDEV--EDPILYLED 313
L + T F Q TK ++ + I V +D ++YL
Sbjct: 576 L-LVGDQSTNFQQNKPKESVMNNNSNSCVDTKKTGQTQMKTPPQPIQGVRSKDQLMYLAQ 634
Query: 314 LSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
L + +V F D K+ + + +L+ L+T P V G G + E + +A AL L
Sbjct: 635 L---MNIQVQFSDF-PKANHEMYLTLVSLSTNPPQVCHGEGPTTEASHEKAALEALKVL 689
>gi|340719435|ref|XP_003398159.1| PREDICTED: maternal effect protein staufen-like [Bombus terrestris]
Length = 760
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 144/351 (41%), Gaps = 69/351 (19%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PVSL+ E +RG +E++ G + F+ + ++ + V +G G SKK +K
Sbjct: 399 KSPVSLVHEKALKRGLPVSFEVVSEIGKPHIRTFRTKCTVGDK----VTLGEGPSKKVSK 454
Query: 136 HNAAKSVLDQL----------------IGRDDEKLMCQKENLFKV--EP----------N 167
+AA+ +L++L + R + NL KV EP N
Sbjct: 455 KHAAEFMLEELNRLPPLPETIQNRLVRVKRKPPATKKKSRNLIKVYQEPRSDSDSAEEVN 514
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PV +L + ++ PVY E G P + F + + Y +G+G +KK+AKR AA
Sbjct: 515 PVSRLDQIQQAKREKEPVYNLIEEKGAPRRKEFVMEVTMGQYSAQGIGPNKKLAKRAAAE 574
Query: 228 NMLKFLE-TVPIEIPEKK-----QGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQY--- 278
+L L T P P K + E+V++K TFL + + + Q +
Sbjct: 575 ALLTQLGYTKPQPQPTKPSIKTGESENVEQK--------PRKVTFLEDEQINETQSHPPV 626
Query: 279 -HTVFSQKTKGPLL-------------------EKLLSTRNLIDEVEDPILYLEDLSDEL 318
T+ Q G LL E+L + P L+ LS
Sbjct: 627 GGTIGRQLVPGLLLVDGGQESKLGSGPSVQIVAEELRGQQQQNPPTVSPKDQLKYLSQLF 686
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRAL 369
+ V F D + + + SL+ L+T P V G G + ++ +A +AL
Sbjct: 687 NFSVEFNDFPKGAVNKEYLSLVTLSTDPPQVCHGNGPTRTASRNQAALKAL 737
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 39/209 (18%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGA---------------INEPIFK-YRISLTS 117
G+ P + L +RG A Y Q A I P F Y +
Sbjct: 270 GNLPPTVELNALAMKRGEATVYTFRQAPPAGLQQYVTNGLGHFPRIFNPRFPTYNRGFHA 329
Query: 118 ESRLYVA---------IGSGKSKKEAKHNAAKSVLDQL------------IGRDDEKLMC 156
E +LY+ IG G + + A+H+AA L+QL + +
Sbjct: 330 EPQLYLVSLKVGEREFIGRGLTGQAARHDAASKALEQLRQLPLPEEIANTCNSGENGTLG 389
Query: 157 QKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGK 216
+ ++ +PV + E + R P +E G PH R F V G G
Sbjct: 390 EAKDPIAELKSPVSLVHEKALKRGL-PVSFEVVSEIGKPHIRTFRTKCTVGDKVTLGEGP 448
Query: 217 SKKIAKREAALNMLKFLETVPIEIPEKKQ 245
SKK++K+ AA ML+ L +P +PE Q
Sbjct: 449 SKKVSKKHAAEFMLEELNRLP-PLPETIQ 476
>gi|6755674|ref|NP_035620.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 3
[Mus musculus]
gi|9789804|sp|Q9Z108.1|STAU1_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
gi|4335945|gb|AAD17529.1| RNA-binding protein staufen [Mus musculus]
gi|148674545|gb|EDL06492.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_b
[Mus musculus]
Length = 487
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 24/212 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 94 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 149
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRK 180
K NAA++VL+QL + R ++ + + K P NP+ +L + +K
Sbjct: 150 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKTAPDYGQGMNPISRLAQIQQAKK 209
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEI 240
P Y GLP R F + V + EG+G +KK+AKR AA NML+ L ++
Sbjct: 210 EKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILG---FKV 266
Query: 241 PEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
P+ + + + E +K D TF P
Sbjct: 267 PQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 298
>gi|170051834|ref|XP_001861946.1| R2D2 [Culex quinquefasciatus]
gi|167872902|gb|EDS36285.1| R2D2 [Culex quinquefasciatus]
Length = 314
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 74 GDRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
G +TPV+ +QE+ +RR P YE + + IF ++ ++ +G G+SKK
Sbjct: 8 GAKTPVTELQEICARRKVPLPIYESAGEDNSTPAKIFSTSVTALGQT----CVGHGRSKK 63
Query: 133 EAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETT 192
++KH AA +L L + + L + V ++++ C+ R + P +E ++
Sbjct: 64 DSKHAAALHMLKLLASHGESGIDLDDPQLAISSSDKVMEVRDICVQRNFEVPEFECVRSS 123
Query: 193 GLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE 239
G H F V G+ +KK AK+ A MLK L+ +P+E
Sbjct: 124 GPSHAPEFEFECRVGNIVRRGVHNTKKGAKQVACNEMLKTLQAMPVE 170
>gi|201023367|ref|NP_001128425.1| R2D2 protein [Tribolium castaneum]
gi|270009455|gb|EFA05903.1| hypothetical protein TcasGA2_TC008716 [Tribolium castaneum]
Length = 320
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 70 RLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
R NT +TP ++QE +RG + P+Y L+ + +E F Y++++ + +G G
Sbjct: 3 RQNT--KTPAMVLQEFTMKRGFSPPEYILVMSKTGTHENEFHYKVNVAN----VCGLGFG 56
Query: 129 KSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPV------------------- 169
+SK+ AKHNAA L+ L ++ L+ NPV
Sbjct: 57 RSKQVAKHNAASKALEILA----------EQGLYDPSSNPVQEFNAQSHRNESDSPQKPP 106
Query: 170 ----GQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
G L++ C K P P ++ G PH R FT + + +KK AK+ A
Sbjct: 107 VNFIGNLKDMCCEFKLPYPEFKEISDVGPPHCREFTYECCIASITTQATANTKKQAKQLA 166
Query: 226 ALNML-KFLETVP 237
A ML K ET P
Sbjct: 167 AREMLEKIRETCP 179
>gi|304307735|ref|NP_001182007.1| R2D2 protein [Bombyx mori]
gi|300669731|dbj|BAJ11654.1| R2D2 [Bombyx mori]
Length = 340
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 23/177 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP++++QE++ + G P+YE + G ++ F++R ES S +SK+EAK
Sbjct: 2 KTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGES----VSASARSKREAK 57
Query: 136 HNAAKSVLDQL--IGR----------------DDEKLMCQKENLFKVEPNP-VGQLQEAC 176
AA+++L L IG + C + V+ V L+E C
Sbjct: 58 QEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLKELC 117
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
K P Y TG H R+F+V A + ++ + G +K+ A+++AA ++ FL
Sbjct: 118 EEYKLPGVEYALVADTGPAHMRLFSVRASIGLHSRDASGTTKRQARQKAAADLYLFL 174
>gi|51105080|gb|AAT97100.1| putative double strand RNA binding protein [Lymnaea stagnalis]
Length = 141
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 13/137 (9%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+S +QE ++ P+Y+LI EGA++EP F R+++ + VA G G SKK+AK
Sbjct: 7 KTPISYLQEYATKHAITPQYDLIANEGAVHEPTFIMRVTVGDNA---VATGKGSSKKKAK 63
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVY 186
H AA++ L+ L+G + + ++E P NP+G+LQE + PP+Y
Sbjct: 64 HAAAQNALNILLGVTNGQEEIKEEPTVSTAPTPNKEEDVGNPIGELQEFTQKKLLKPPIY 123
Query: 187 ETEETTGLPHERMFTVC 203
E G PH R F +C
Sbjct: 124 EFVTEQGPPHAREF-IC 139
>gi|312385229|gb|EFR29781.1| hypothetical protein AND_01016 [Anopheles darlingi]
Length = 158
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 295 LSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTG 354
L +L D D IL LE +++E ++ V++VDI+EK+ + +Q L+QL+T PV V GTG
Sbjct: 75 LQHTSLGDGSIDFILLLERIANEQRFEVTYVDIDEKTHSGQYQCLVQLSTMPVAVCHGTG 134
Query: 355 ASIEVAKIEAVYRALDFLQIMNR 377
++ A++ A +L++L+IM +
Sbjct: 135 PTVRDAQLLAARNSLEYLKIMTK 157
>gi|328714433|ref|XP_003245358.1| PREDICTED: hypothetical protein LOC100570158 [Acyrthosiphon pisum]
Length = 540
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 89 RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148
+ A + IQI+ N I ++ S T + + + G G SK EAK+N LDQ+
Sbjct: 258 KNHAARLMYIQIDSN-NATINEHSTSNTRKKKP-IDFGLGLSKNEAKNNTVNIALDQIY- 314
Query: 149 RDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYE-TEETTGLPHERMFTVCAYVN 207
+N K+ N +G LQE C R W P YE +E H+ ++V
Sbjct: 315 --------HGKNKTKMSANYIGTLQEKCAARGWELPKYEYHQENDNEIHKLFYSVICSAG 366
Query: 208 VYKEEGMGKSKKIAKREAA 226
YK G+G SK++AK +AA
Sbjct: 367 PYKSTGVGNSKQLAKNQAA 385
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
V + ++++ RG +Y +I G + I+ Y ++ V G G S +EA +
Sbjct: 108 AVQRLDDIMTTRGKLVQYAMISTAGLMPSRIYTY----NAKCEGMVTYGCGSSMEEAIED 163
Query: 138 AAKSVLDQ----LIGRDDEKLMCQKENLFKVEPNP-------VGQLQEACMTRKWPPPVY 186
AA L++ L+ DD L N K++ N +G LQE C R P Y
Sbjct: 164 AAAKFLEKFEFALVQGDDHLL--NSMNSLKIKSNHNVSYNNHIGMLQEYCQARGLDLPKY 221
Query: 187 ETEETTGLPHER-MFTVCAYVNVYKEEGMGKSKKIAKREAA 226
E + + ++R M++V + K G+G SK+IAK AA
Sbjct: 222 EYHQDNDIKNKRYMYSVICSIGKCKCTGVGISKQIAKNHAA 262
>gi|74198409|dbj|BAE39688.1| unnamed protein product [Mus musculus]
Length = 577
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 238 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG+G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 388
>gi|74199026|dbj|BAE30728.1| unnamed protein product [Mus musculus]
gi|74220489|dbj|BAE31464.1| unnamed protein product [Mus musculus]
Length = 485
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 94 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 149
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 150 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 209
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG+G +KK+AKR AA NML+ L
Sbjct: 210 KKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILG---F 266
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 267 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 300
>gi|51896012|gb|AAH82277.1| Stau1 protein [Mus musculus]
Length = 576
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 181 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 236
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 237 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 296
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG+G +KK+AKR AA NML+ L
Sbjct: 297 KKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILG---F 353
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 354 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 387
>gi|74214463|dbj|BAE31085.1| unnamed protein product [Mus musculus]
Length = 489
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 94 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 149
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 150 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 209
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG+G +KK+AKR AA NML+ L
Sbjct: 210 KKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILG---F 266
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 267 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 300
>gi|158186639|ref|NP_001103375.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 2
[Mus musculus]
gi|14861636|gb|AAK73752.1|AF395842_1 staufen isoform I2 [Mus musculus]
gi|12836618|dbj|BAB23736.1| unnamed protein product [Mus musculus]
gi|15277960|gb|AAH12959.1| Staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
gi|148674544|gb|EDL06491.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_a
[Mus musculus]
Length = 489
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 94 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 149
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 150 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 209
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG+G +KK+AKR AA NML+ L
Sbjct: 210 KKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILG---F 266
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 267 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 300
>gi|74137731|dbj|BAE24052.1| unnamed protein product [Mus musculus]
Length = 579
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 184 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 239
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 240 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 299
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG+G +KK+AKR AA NML+ L
Sbjct: 300 KKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILG---F 356
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 357 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 390
>gi|425626938|gb|AFX89027.1| R2D2 isoform b [Mayetiola destructor]
Length = 320
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 72 NTGDRTPVSLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS 130
N ++TPVS +QEL ++ AP YE + E ++ F + +A GSG S
Sbjct: 15 NMEEKTPVSQLQELCAQEKVAPPTYEFFRDE---HDKKFGCLVQAFGPE---IAKGSGLS 68
Query: 131 KKEAKHNAAKSVLDQL--IGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
K EAKH AA S++ L + R ++++ E++ + N VG L CM +P P Y
Sbjct: 69 KMEAKHAAAASLIRLLSQLDRFKDRILAV-EHVPAKDKNAVGDLINFCMQHNFPTPNYNV 127
Query: 189 EETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
+E GL H R FT V G +K+ AK AA ML
Sbjct: 128 KE-GGLAHLREFTAECQVGGSSCIAKGATKQGAKHYAAEAML 168
>gi|74204587|dbj|BAE35365.1| unnamed protein product [Mus musculus]
Length = 587
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 192 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 247
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 248 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 307
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG+G +KK+AKR AA NML+ L
Sbjct: 308 KKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILG---F 364
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 365 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 398
>gi|354480663|ref|XP_003502524.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Cricetulus griseus]
Length = 550
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 155 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 210
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 211 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 270
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 271 KKDKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILG---F 327
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 328 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 361
>gi|344249398|gb|EGW05502.1| Double-stranded RNA-binding protein Staufen-like 1 [Cricetulus
griseus]
Length = 489
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 94 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 149
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 150 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 209
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 210 KKDKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILG---F 266
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 267 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 300
>gi|51859122|gb|AAH81755.1| Stau1 protein, partial [Rattus norvegicus]
Length = 554
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 159 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 214
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 215 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 274
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 275 KKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGAGTNKKVAKRNAAENMLEILG---F 331
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 332 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 365
>gi|158186644|ref|NP_001103377.1| staufen RNA binding protein homolog 1 isoform 2 [Rattus norvegicus]
gi|9755163|gb|AAF98177.1|AF290989_1 staufen isoform Stau-I6 [Rattus norvegicus]
gi|74353677|gb|AAI01859.1| Stau1 protein [Rattus norvegicus]
gi|149042853|gb|EDL96427.1| staufen RNA binding protein homolog 1 (Drosophila) [Rattus
norvegicus]
Length = 489
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 94 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 149
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA++VL+QL + R ++ + + K++ NP+ +L +
Sbjct: 150 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQA 209
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 210 KKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGAGTNKKVAKRNAAENMLEILG---F 266
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 267 KVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 300
>gi|326931869|ref|XP_003212046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like isoform 2 [Meleagris gallopavo]
Length = 684
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ ++ G GKSKK +
Sbjct: 266 NKSEISQVFEIALKRNLPVNFEVTKESGPPHMKSFVTKVSVGE----FMGEGEGKSKKIS 321
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + + ++ + +++ K++ NP+ +L +
Sbjct: 322 KKNAAIAVLEELKKLPPLPTVEKMKPRIKKKTKSIVKLQTSPEYGQGMNPISRLAQIQQA 381
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V V+ EGMG +KK+AKR AA NML+ L
Sbjct: 382 KKEKEPEYMLITERGLPRRREFVMQVKVGVHTAEGMGTNKKVAKRNAAENMLEIL 436
>gi|357129531|ref|XP_003566415.1| PREDICTED: ribonuclease 3-like protein 2-like [Brachypodium
distachyon]
Length = 366
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ T D PVS + EL + G P++ + Q G +F ++ E V +GS
Sbjct: 196 IITAETIDEQPVSTLHELCQKHGKIPQFNIWQKGGTTVANVF-----VSGE---LVGMGS 247
Query: 128 GKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK-ENLFKVEPNPVGQLQEA-------CMTR 179
+ + AK NAA++ L L+G ++++ ++ +VE VG+L+E C +
Sbjct: 248 SEQRTIAKLNAARNALGNLLGGAKQQVLTTGVGHISRVE---VGELRECKQKLNEQCSRK 304
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYV 206
WP P+++ E+ G HER FT V
Sbjct: 305 HWPKPIFKLEKEDGPAHERKFTYSVQV 331
>gi|350595031|ref|XP_003360089.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Sus scrofa]
Length = 677
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 282 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 337
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 338 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQSTQEYGQGMNPISRLAQIQQA 397
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 398 KKEKEPEYLLLTERGLPRRREFVMQVKVGNHTAEGSGTNKKVAKRNAAENMLEIL 452
>gi|444723100|gb|ELW63764.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Tupaia chinensis]
Length = 220
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 30/210 (14%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
P+ L E M K PVYE E + FT V G G SKK AKR AA
Sbjct: 35 PIQVLHEYGMKTK-NIPVYECERSDVQVQVPTFTFRVTVGDVTCTGKGASKKQAKRNAAE 93
Query: 228 NMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKT 286
KFL PE + +N + H+ T +H++ S
Sbjct: 94 ---KFLAKFSNLSPE-------NHISLTNVVGHSLGCT------------WHSLRNSSGE 131
Query: 287 KGPLLEK-LLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTT 345
K LL++ LLS N D I L +++ E + ++++DIEE S +Q L +L+T+
Sbjct: 132 KINLLKRSLLSIPN-----TDYIQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTS 186
Query: 346 PVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
P+TV G+G S A+ +A + AL +L+I+
Sbjct: 187 PITVCHGSGISCGNAQSDAAHNALQYLKII 216
>gi|296480970|tpg|DAA23085.1| TPA: staufen, RNA binding protein, homolog 1 [Bos taurus]
Length = 601
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 24/212 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 208 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 263
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRK 180
K NAA +VL++L + R ++ + +++ + P NP+ +L + +K
Sbjct: 264 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRGGPECGQGMNPISRLAQIQQAKK 323
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEI 240
P Y GLP R F + V + EG G +KK+AKR AA NML+ L ++
Sbjct: 324 EKEPEYLLLAERGLPRRREFVMQVKVGNHTAEGSGTNKKVAKRNAAENMLEILG---FKV 380
Query: 241 PEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
P+ + + + E +K D TF P
Sbjct: 381 PQAQPSKPALKSEEKTPIKKPGDGRKVTFFEP 412
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLM----------C 156
P Y++ L+ + + G GK+++ AKH+AA L L + +
Sbjct: 145 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQSEPPSERLEASGASGKEPS 202
Query: 157 QKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGK 216
++ENL K E + Q+ E + R P +E +G PH + F V + EG GK
Sbjct: 203 EEENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTRVSVGEFVGEGEGK 258
Query: 217 SKKIAKREAALNMLKFLETVP 237
SKKI+K+ AA+ +L+ L+ +P
Sbjct: 259 SKKISKKNAAIAVLEELKKLP 279
>gi|327271788|ref|XP_003220669.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like isoform 2 [Anolis carolinensis]
Length = 693
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ ++ G GKSKK +
Sbjct: 276 NKSEISQVFEIALKRNLPVNFEVTRESGPPHMKSFVTKVSVGE----FMGEGEGKSKKIS 331
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + + ++ + +++ K++ NP+ +L +
Sbjct: 332 KKNAAIAVLEELKKLPPLPTVEKMKPRIKKKTKSIVKLQTSPEYGQGMNPISRLAQIQQA 391
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V ++ EGMG +KK+AKR AA NML+ L
Sbjct: 392 KKEKEPEYMLITERGLPRRREFVMQVKVGMHTAEGMGTNKKVAKRNAAENMLELL 446
>gi|74219068|dbj|BAE26678.1| unnamed protein product [Mus musculus]
Length = 592
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA++VL+QL + R ++ + + K++
Sbjct: 240 FVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQG 299
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG+G +KK+AKR A
Sbjct: 300 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNA 359
Query: 226 ALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
A NML+ L ++P+ + + + E +K D TF P
Sbjct: 360 AENMLEILG---FKVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 403
>gi|36963075|gb|AAQ87664.1| staufen [Mus musculus]
Length = 436
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA++VL+QL + R ++ + + K++
Sbjct: 143 FVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQG 202
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG+G +KK+AKR A
Sbjct: 203 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNA 262
Query: 226 ALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
A NML+ L ++P+ + + + E +K D TF P
Sbjct: 263 AENMLEILG---FKVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 306
>gi|326931867|ref|XP_003212045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like isoform 1 [Meleagris gallopavo]
Length = 712
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
++ G GKSKK +K NAA +VL++L + + ++ + +++ K++
Sbjct: 321 FMGEGEGKSKKISKKNAAIAVLEELKKLPPLPTVEKMKPRIKKKTKSIVKLQTSPEYGQG 380
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V V+ EGMG +KK+AKR A
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKVGVHTAEGMGTNKKVAKRNA 440
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 441 AENMLEIL 448
>gi|74145338|dbj|BAE36128.1| unnamed protein product [Mus musculus]
Length = 583
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA++VL+QL + R ++ + + K++
Sbjct: 231 FVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQG 290
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG+G +KK+AKR A
Sbjct: 291 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNA 350
Query: 226 ALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
A NML+ L ++P+ + + + E +K D TF P
Sbjct: 351 AENMLEILG---FKVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 394
>gi|61098218|ref|NP_001012849.1| double-stranded RNA-binding protein Staufen homolog 1 [Gallus
gallus]
gi|53136660|emb|CAG32659.1| hypothetical protein RCJMB04_32c1 [Gallus gallus]
Length = 712
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
++ G GKSKK +K NAA +VL++L + + ++ + +++ K++
Sbjct: 321 FMGEGEGKSKKISKKNAAIAVLEELKKLPPLPTVEKMKPRIKKKTKSIVKLQTSPEYGQG 380
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V V+ EGMG +KK+AKR A
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKVGVHTAEGMGTNKKVAKRNA 440
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 441 AENMLEIL 448
>gi|74198083|dbj|BAE35221.1| unnamed protein product [Mus musculus]
Length = 575
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA++VL+QL + R ++ + + K++
Sbjct: 223 FVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQG 282
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG+G +KK+AKR A
Sbjct: 283 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNA 342
Query: 226 ALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
A NML+ L ++P+ + + + E +K D TF P
Sbjct: 343 AENMLEILG---FKVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 386
>gi|157130321|ref|XP_001655660.1| hypothetical protein AaeL_AAEL011753 [Aedes aegypti]
gi|108871912|gb|EAT36137.1| AAEL011753-PA [Aedes aegypti]
Length = 318
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 76 RTPVSLMQEL-LSRRGTAPKYELIQIE---GAINEPIFKYRISLTSESRLYVAIGSGKSK 131
+TP++ +QEL +S++ P Y E G N +F + + + G G+SK
Sbjct: 10 KTPITELQELCVSKKAPHPLYTFTGEEIDGGNPNSKVFTTSVLALG----FTSSGIGRSK 65
Query: 132 KEAKHNAAKSVLDQLI--GRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
K++KH+AA +L L G D + + L + + V ++++ C+ R + P +
Sbjct: 66 KDSKHDAAYKLLKLLFEKGLSDIDVDNDEHFLAVLSSDKVTEVRDICVQRNFEMPEFNCV 125
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPE 242
++G H F + G+ K+KK AK+ A M+K L+ +P+E E
Sbjct: 126 RSSGPSHAPEFEYECRIGAIVRRGIHKTKKGAKQAACNEMIKTLQAMPVEDSE 178
>gi|158186641|ref|NP_001103376.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 1
[Mus musculus]
Length = 495
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA++VL+QL + R ++ + + K++
Sbjct: 143 FVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQG 202
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG+G +KK+AKR A
Sbjct: 203 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNA 262
Query: 226 ALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
A NML+ L ++P+ + + + E +K D TF P
Sbjct: 263 AENMLEILG---FKVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 306
>gi|345790172|ref|XP_867111.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 6 [Canis lupus familiaris]
Length = 503
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 108 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTKVSVGE----FVGEGEGKSKKIS 163
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 164 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQSSTDCGQGMNPISRLAQIQQA 223
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 224 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILG---F 280
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K T D TF P
Sbjct: 281 KVPQAQPTKPALKSEEKTPIKKTGDGRKVTFFEP 314
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVL------------------DQLIG 148
P Y++ L+ + + G GK+++ AKH+AA L +Q+ G
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRTLQSEPPPERPEGRRLGEQVNG 99
Query: 149 RDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV 208
R+ E +ENL K E + Q+ E + R P +E +G PH + F V
Sbjct: 100 RESE-----EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTKVSVGE 150
Query: 209 YKEEGMGKSKKIAKREAALNMLKFLETVP 237
+ EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 FVGEGEGKSKKISKKNAAIAVLEELKKLP 179
>gi|440902185|gb|ELR53005.1| Double-stranded RNA-binding protein Staufen-like protein 1, partial
[Bos grunniens mutus]
Length = 587
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 196 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 251
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 252 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQGGPECGQGMNPISRLAQIQQA 311
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 312 KKEKEPEYLLLAERGLPRRREFVMQVKVGNHTAEGSGTNKKVAKRNAAENMLEILG---F 368
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 369 KVPQAQPSKPALKSEEKTPIKKPGDGRKVTFFEP 402
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 137 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQSEPPSERLEVNGRESE--- 191
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 192 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTRVSVGEFVGEGEG 245
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 246 KSKKISKKNAAIAVLEELKKLP 267
>gi|313212829|emb|CBY36745.1| unnamed protein product [Oikopleura dioica]
Length = 596
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 142/327 (43%), Gaps = 62/327 (18%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS--------ESRLYVAIGSGKS 130
VSL+ EL +R ++E I EG + + R+ + + + + A G +S
Sbjct: 289 VSLVYELALKRNLTVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQAQS 348
Query: 131 KKEAKHNAAKSVLDQL----------------IGRDDEKLMCQKENLFKVEP----NPV- 169
KK A+ AA +VLD++ GR+ +K KE K P +PV
Sbjct: 349 KKLARRKAAITVLDEMRRLIESEEREKPLPKGKGRNKKKSNVIKETE-KQSPDISLHPVS 407
Query: 170 --GQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
Q+Q+A R+ P+Y+ + ++ F + VN +G+G +KK AK+ AA
Sbjct: 408 RLAQIQQAAKERE---PIYQVISEKSVQRKKEFIMQCIVNDKVSQGIGPNKKTAKKIAAE 464
Query: 228 NMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTK 287
ML + P D E+G+ + + ++S L K+ + +Q T
Sbjct: 465 AMLVIMGHEP-------SVGDCTEEGKPSKAEGKNESA-----ALPKMAANPSGIAQAT- 511
Query: 288 GPLLEKLLSTRNLIDEVEDPIL-YLEDLSDELKYRVSFVDIEEKSKADG-FQSLLQLTTT 345
L ++ +V +P L YL L + VSF D + DG F SL+ + TT
Sbjct: 512 -----ILPNSAAKAGQVNEPQLNYLASLQG---FSVSFTDFPK----DGQFLSLVSIGTT 559
Query: 346 PVTVFCGTGASIEVAKIEAVYRALDFL 372
P V G G+S+ +A EA +AL L
Sbjct: 560 PPIVAHGQGSSVALAHEEAAAQALKAL 586
>gi|158298855|ref|XP_001238071.2| AGAP009887-PA [Anopheles gambiae str. PEST]
gi|157014087|gb|EAU76055.2| AGAP009887-PA [Anopheles gambiae str. PEST]
Length = 324
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 76 RTPVSLMQELLSR-RGTAPKYELIQIEGA---INEPIFKYRISLTSESRLYVAIGSGKSK 131
+ P++++QE+ + + T P Y+ + E + +N +F Y ++ + A G G+SK
Sbjct: 10 KMPITMLQEMCFKVKSTLPIYQFLGEECSPHSVNVKLFSYMVTALGKQ----ATGVGRSK 65
Query: 132 KEAKHNAA----KSVLDQLIGRDDEKLMCQKEN-----LFKVEPNPVGQLQEACMTRKWP 182
+EAKH +A + L+ G +DE + E ++ + V Q+++ C+ R +P
Sbjct: 66 QEAKHESAWQLIRLALELPAGEEDEMVATAAEERGSLAALEIGTDRVNQVRDICIQRNFP 125
Query: 183 PPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE 239
P + G H +F + G +KK AK+ A M+K L+++P+E
Sbjct: 126 LPEIVQVRSYGPSHAPVFEFECRIREIVRRGSHSTKKGAKQIACQEMIKTLQSMPVE 182
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHE---RMFTVCAYVNVYKEEGMGKSKKIAKRE 224
P+ LQE C K P+Y+ PH ++F+ + G+G+SK+ AK E
Sbjct: 12 PITMLQEMCFKVKSTLPIYQFLGEECSPHSVNVKLFSYMVTALGKQATGVGRSKQEAKHE 71
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNG 257
+A +++ + +E+P ++ E V E G
Sbjct: 72 SAWQLIR----LALELPAGEEDEMVATAAEERG 100
>gi|16758178|ref|NP_445888.1| staufen RNA binding protein homolog 1 isoform 1 [Rattus norvegicus]
gi|9754866|gb|AAF98119.1|AF227200_1 staufen isoform Stau+I6 [Rattus norvegicus]
Length = 495
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 23/194 (11%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-------- 146
+ L Q+ P K ++ S +V G GKSKK +K NAA++VL+QL
Sbjct: 117 FPLTQVARESGPPHMKNFVTRVSVGE-FVGEGEGKSKKISKKNAARAVLEQLRRLPPLPA 175
Query: 147 IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMTRKWPPPVYETEETTGLPHER 198
+ R ++ + + K++ NP+ +L + +K P Y GLP R
Sbjct: 176 VERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRR 235
Query: 199 MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGL 258
F + V + EG G +KK+AKR AA NML+ L ++P+ + + + E +
Sbjct: 236 EFVMQVKVGHHTAEGAGTNKKVAKRNAAENMLEILG---FKVPQAQPAKPALKSEEKTPV 292
Query: 259 KHTHDS---TFLTP 269
K D TF P
Sbjct: 293 KKPGDGRKVTFFEP 306
>gi|358415217|ref|XP_591710.5| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Bos taurus]
gi|359071548|ref|XP_002692543.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Bos taurus]
Length = 577
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQGGPECGQGMNPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYLLLAERGLPRRREFVMQVKVGNHTAEGSGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPSKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQSEPPSERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTRVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|357613734|gb|EHJ68693.1| R2D2 protein [Danaus plexippus]
Length = 216
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 35/189 (18%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+T V+++QEL+ + G P+YE + G ++ +F+YR ++ A G +SKKEAK
Sbjct: 2 KTAVTVLQELMLKLGLVPEYECVSQSGPQHQAMFEYRCTVYGCD----ASGLARSKKEAK 57
Query: 136 HNAAKSVLDQLIGRD------DEKLMCQKEN---------LFKVEPNP------------ 168
AA+ +L +L R + C++E +EP P
Sbjct: 58 QEAARYMLQKLFARGLNVPAPYATMPCEQERPSSPPSPNNNPALEPGPSAATGRSTLPLD 117
Query: 169 ----VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
V L+E P YE TG H R F++ + ++ + +KK A++
Sbjct: 118 TRSYVALLKELSEQYHLGEPQYELVSDTGPAHHRHFSIRVSLGLHSRQCTSTTKKAARQL 177
Query: 225 AALNMLKFL 233
AA + +L
Sbjct: 178 AAEQLYTYL 186
>gi|313237061|emb|CBY25144.1| unnamed protein product [Oikopleura dioica]
Length = 1307
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 144/330 (43%), Gaps = 62/330 (18%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS--------ESRLYVAIGS 127
++ VSL+ EL +R ++E I EG + + R+ + + + + A G
Sbjct: 997 KSEVSLVYELALKRNLTVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQ 1056
Query: 128 GKSKKEAKHNAAKSVLDQL----------------IGRDDEKLMCQKENLFKVEP----N 167
+SKK A+ AA +VLD++ GR+ +K KE K P +
Sbjct: 1057 AQSKKLARRKAAITVLDEMRRLIESEEREKPLPKGKGRNKKKSNVIKETE-KQSPDISLH 1115
Query: 168 PV---GQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
PV Q+Q+A R+ P+Y+ + ++ F + VN +G+G +KK AK+
Sbjct: 1116 PVSRLAQIQQAAKERE---PIYQVISEKSVQRKKEFIMQCIVNDKVSQGIGPNKKTAKKI 1172
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + P D E+G+ + + ++S L K+ + +Q
Sbjct: 1173 AAEAMLVIMGHEP-------SVGDCTEEGKPSKAEGKNESA-----ALPKMAANPSGIAQ 1220
Query: 285 KTKGPLLEKLLSTRNLIDEVEDPIL-YLEDLSDELKYRVSFVDIEEKSKADG-FQSLLQL 342
T P ++ +V +P L YL L + VSF D + DG F SL+ +
Sbjct: 1221 ATILP------NSAAKAGQVNEPQLNYLASLQG---FSVSFTDFPK----DGQFLSLVSI 1267
Query: 343 TTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
TTP V G G+S+ +A EA +AL L
Sbjct: 1268 GTTPPIVAHGQGSSVALAHEEAAAQALKAL 1297
>gi|327271786|ref|XP_003220668.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like isoform 1 [Anolis carolinensis]
Length = 695
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
++ G GKSKK +K NAA +VL++L + + ++ + +++ K++
Sbjct: 321 FMGEGEGKSKKISKKNAAIAVLEELKKLPPLPTVEKMKPRIKKKTKSIVKLQTSPEYGQG 380
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V ++ EGMG +KK+AKR A
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKVGMHTAEGMGTNKKVAKRNA 440
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 441 AENMLELL 448
>gi|151553859|gb|AAI49062.1| STAU1 protein [Bos taurus]
Length = 531
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 136 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 191
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 192 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQGGPECGQGMNPISRLAQIQQA 251
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 252 KKEKEPEYLLLAERGLPRRREFVMQVKVGNHTAEGSGTNKKVAKRNAAENMLEILG---F 308
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 309 KVPQAQPSKPALKSEEKTPIKKPGDGRKVTFFEP 342
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 77 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQSEPPSERLEVNGRESE--- 131
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 132 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTRVSVGEFVGEGEG 185
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 186 KSKKISKKNAAIAVLEELKKLP 207
>gi|226510363|ref|NP_001140816.1| uncharacterized protein LOC100272891 [Zea mays]
gi|194701228|gb|ACF84698.1| unknown [Zea mays]
gi|413948833|gb|AFW81482.1| hypothetical protein ZEAMMB73_371069 [Zea mays]
Length = 376
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 30/182 (16%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ T D PV+ + EL + G +++ Q +G I +F + E V +GS
Sbjct: 206 IITAETIDEQPVTTLHELCQKHGKVAQFKTWQKDGMIVVNVF-----VGGE---MVGLGS 257
Query: 128 GKSKKEAKHNAAKSVLDQLIGRDDEKLM--CQKENLFKVEPNPVGQLQEA-------CMT 178
+ K AK NAA+ L +LIG ++++ C L + + +L+E C+
Sbjct: 258 SEQKVIAKLNAARDALGKLIGGAKQQVLINCAANGLV----DDIAELRECKQKLIEQCIR 313
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEG----MGKSK---KIAKREAALNMLK 231
+ WP P+++ E+ G HER F VC+ V V + G +G+S K A+ AA M++
Sbjct: 314 KHWPKPIFKLEKEGGPAHERNF-VCS-VQVDTQTGTFVTIGESMSRVKDAENSAAHKMVE 371
Query: 232 FL 233
L
Sbjct: 372 LL 373
>gi|270005018|gb|EFA01466.1| hypothetical protein TcasGA2_TC007013 [Tribolium castaneum]
Length = 4051
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 76 RTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+TP+SL+QEL++ RG + P Y E F T ++ A G G SKK A
Sbjct: 4 KTPISLLQELMAARGISLPVYI---------EEGFGTSFKCTVKAGGVTACGYGTSKKNA 54
Query: 135 KHNAAKSVLDQLIGRDDE---KLMCQKENLFKVEPNPVGQLQEACMTR---KWPPPVYET 188
KH +AK+ L +L D K + NLF+ N VG+L E +R K+P + T
Sbjct: 55 KHESAKNALVKLRREDKSPEIKPRAENNNLFR---NFVGELNEYAASRYGAKYPSYDFLT 111
Query: 189 EETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAKREAALNMLKFLE 234
G F C++ N EE G G +KK AK+++A ML+ ++
Sbjct: 112 VSVDG----EFFFKCSFAN---EESIGEGMNKKDAKQDSARKMLELVK 152
>gi|395506867|ref|XP_003757751.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
Staufen homolog 1 [Sarcophilus harrisii]
Length = 687
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ ++ G GKSKK +
Sbjct: 268 NKSEISQVFEIALKRNLPVNFEVTRESGPPHMKSFVTKVSVGE----FMGEGEGKSKKIS 323
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + + ++ + +++ K++ NP+ +L +
Sbjct: 324 KKNAAIAVLEELKKLPPLPTVEKMKPRIKKKTKSIVKLQTSPEYGQGMNPISRLAQIQQA 383
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EGMG +KK+AKR AA NML+ L
Sbjct: 384 KKDKEPEYMLLTERGLPRRREFVMQVKVGGHTAEGMGTNKKVAKRNAAENMLEIL 438
>gi|325530262|sp|D2GVP7.1|STAU1_AILME RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
gi|281351107|gb|EFB26691.1| hypothetical protein PANDA_000813 [Ailuropoda melanoleuca]
Length = 580
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 189 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 244
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L R ++ + +++ +++ NP+ +L +
Sbjct: 245 KKNAAIAVLEELKKLPPLPTFERVKPRIKKKTKSIVRLQGSTDCSQGMNPISRLAQIQQA 304
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 305 KKEKEPEYLLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 361
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 362 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 395
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 61/254 (24%)
Query: 36 SPSRVLFDNNEIKQIPKVS----TNNLPLEEAAR-LEVMRLNTGDRTPVSLMQE------ 84
S S++L N + P +S T++LP E A R ++ L + TP S E
Sbjct: 16 SGSQILSKNQSLLSQPLMSIPSTTSSLPSENAGRPIQNSALPSASLTPTSAAAESITPTV 75
Query: 85 ----LLSRRGTAPKYELI------------QIEGAINEPIFKYRIS---LTSESRLYVAI 125
L + G P Y+ + + G P + Y L + L V
Sbjct: 76 ELNALCMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGG 135
Query: 126 ----GSGKSKKEAKHNAAKSVL------------------DQLIGRDDEKLMCQKENLFK 163
G GK+++ AKH+AA L +Q+ GR+ E +ENL K
Sbjct: 136 QQFNGKGKTRQAAKHDAAAKALRTLQSEPLPERPEGRRPGEQVNGRESE-----EENLNK 190
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
E + Q+ E + R P +E +G PH + F V + EG GKSKKI+K+
Sbjct: 191 SE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTRVSVGEFVGEGEGKSKKISKK 246
Query: 224 EAALNMLKFLETVP 237
AA+ +L+ L+ +P
Sbjct: 247 NAAIAVLEELKKLP 260
>gi|4572588|emb|CAB40082.1| staufen protein [Homo sapiens]
Length = 496
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 28/207 (13%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 101 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 156
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 157 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 216
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 217 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 273
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDST 265
++P++ +GE TH T
Sbjct: 274 KVPQRSHQTRTQVRGED-----THKET 295
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 150
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 KSKKISKKNAAIAVLEELKKLP 172
>gi|4335949|gb|AAD17531.1| staufen protein [Homo sapiens]
Length = 577
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+++ + + E +K D TF P
Sbjct: 355 KVPQRQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|410953576|ref|XP_003983446.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 2 [Felis catus]
gi|410953578|ref|XP_003983447.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 3 [Felis catus]
Length = 577
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQSSTDYGQGMNPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEIL 352
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI-----------GRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L L GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFS--GKGKTRQAAKHDAAAKALRTLQSEPPPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|410953574|ref|XP_003983445.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 1 [Felis catus]
Length = 496
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 101 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTKVSVGE----FVGEGEGKSKKIS 156
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 157 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQSSTDYGQGMNPISRLAQIQQA 216
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 217 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEIL 271
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI-----------GRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L L GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFS--GKGKTRQAAKHDAAAKALRTLQSEPPPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTKVSVGEFVGEGEG 150
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 KSKKISKKNAAIAVLEELKKLP 172
>gi|45387553|ref|NP_991124.1| double-stranded RNA-binding protein Staufen homolog 1 [Danio rerio]
gi|40807139|gb|AAH65333.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Danio rerio]
Length = 636
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 20/216 (9%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+++ GA + F R+ + + G GKSKK A
Sbjct: 217 NKSEISQVFEIALKRNMPVDFEVLKEAGAPHMKSFVVRVVVGE----FAGEGEGKSKKIA 272
Query: 135 KHNAAKSVLD------QLIGRDDEKL----------MCQKENLFKVEPNPVGQLQEACMT 178
K AA +VL+ QL D L Q + NP+ +L +
Sbjct: 273 KKQAAIAVLEELRRLPQLPATDKIPLRIKKKSKSIIKLQTSPEYGQGMNPISRLAQIQQA 332
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V EGMG SKK+AKR AA ML+ L
Sbjct: 333 KKEKEPEYTLVTERGLPRRREFVMQVSVAGQNAEGMGPSKKVAKRNAAEKMLELLGFKVP 392
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKK 274
+ K DEK + L TF P ++K
Sbjct: 393 QPQPPKPALKTDEKPPAKKLGDGRKVTFFEPGSMEK 428
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 126 GSGKSKKEAKHNAA---------KSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEAC 176
G G++++ AKH+AA + +L Q+ DE +ENL K E + Q+ E
Sbjct: 175 GKGRTRQAAKHDAAAKAIKYLQKEPILQQITEMTDEPA---QENLNKSE---ISQVFEIA 228
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
+ R P +E + G PH + F V V + EG GKSKKIAK++AA+ +L+ L +
Sbjct: 229 LKRNM-PVDFEVLKEAGAPHMKSFVVRVVVGEFAGEGEGKSKKIAKKQAAIAVLEELRRL 287
Query: 237 P 237
P
Sbjct: 288 P 288
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ EG + IF R++L + G S
Sbjct: 3 NPKEKTPMCLVNELARYNKIQPEYKLLSEEGPAHSKIFSVRLTLGDQHW----DAEGTSI 58
Query: 132 KEAKHNAAKSVLDQ 145
K+A+H+AA S L Q
Sbjct: 59 KKAQHSAASSALAQ 72
>gi|431894476|gb|ELK04276.1| Double-stranded RNA-binding protein Staufen like protein 1
[Pteropus alecto]
Length = 750
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 276 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFLTKVSVGE----FVGEGEGKSKKIS 331
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + +V+ NP+ +L +
Sbjct: 332 KKNAAIAVLEELKKLPPLPPVERVKPRIKKKTKPIVRVQSGPEYGQVMNPISRLAQIQQA 391
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 392 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEIL 446
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 217 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 271
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 272 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFLTKVSVGEFVGEGEG 325
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 326 KSKKISKKNAAIAVLEELKKLP 347
>gi|4335947|gb|AAD17530.1| staufen protein [Homo sapiens]
gi|4335951|gb|AAD17532.1| staufen protein [Homo sapiens]
gi|4335953|gb|AAD17533.1| staufen protein [Homo sapiens]
Length = 496
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 101 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 156
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 157 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 216
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 217 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 273
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+++ + + E +K D TF P
Sbjct: 274 KVPQRQPTKPALKSEEKTPIKKPGDGRKVTFFEP 307
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 150
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 KSKKISKKNAAIAVLEELKKLP 172
>gi|149733337|ref|XP_001503607.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Equus caballus]
Length = 577
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L R ++ + +++ +++ NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPTAERVKPRIKKKTKSIVRLQSSPEYGQGMNPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPAKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQSEPPPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|426241595|ref|XP_004014675.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 1 [Ovis aries]
Length = 496
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 101 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 156
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 157 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQSGPEYGQGMNPISRLAQIQQA 216
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK AKR AA NML+ L
Sbjct: 217 KKEKEPEYLLLAERGLPRRREFVMQVKVGNHTAEGSGTNKKAAKRNAAENMLEILG---F 273
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 274 KVPQAQPSKPALKSEEKTPVKKPGDGRKVTFFEP 307
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLVYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQSEPPPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTRVSVGEFVGEGEG 150
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 KSKKISKKNAAIAVLEELKKLP 172
>gi|344280068|ref|XP_003411807.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Loxodonta africana]
Length = 535
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ ++ G GKSKK +
Sbjct: 140 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTKVSVGE----FIGEGEGKSKKIS 195
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA ++L++L + R ++ + +++ K+ NP+ +L +
Sbjct: 196 KKNAAIAILEELKKLPPLPTVERVKPRIKKKTKSIVKLHTGPEYGQGMNPISRLAQIQQA 255
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 256 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILG---F 312
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 313 KVPQSQPTKPALKSEEKTPVKKPGDGRKVTFFEP 346
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G G++++ AKH+AA L ++ GR+ E
Sbjct: 81 PPLLYQVELSVGGQQFN--GKGRTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 135
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 136 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTKVSVGEFIGEGEG 189
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 190 KSKKISKKNAAIAILEELKKLP 211
>gi|209364604|ref|NP_001126609.1| double-stranded RNA-binding protein Staufen homolog 1 [Pongo
abelii]
gi|55732106|emb|CAH92759.1| hypothetical protein [Pongo abelii]
Length = 495
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 100 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 155
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 156 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 215
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 216 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 272
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TFL P
Sbjct: 273 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFLEP 306
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 21/141 (14%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI----------GRDDEKLMC 156
P Y++ L+ + + G GK+++ AKH+AA L L GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLENGRESE---- 95
Query: 157 QKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGK 216
+ENL K E + Q+ E + R P +E +G PH + F V + EG GK
Sbjct: 96 -EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGK 150
Query: 217 SKKIAKREAALNMLKFLETVP 237
SKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 SKKISKKNAAIAVLEELKKLP 171
>gi|355722278|gb|AES07526.1| staufen, RNA binding protein,-like protein 1 [Mustela putorius
furo]
Length = 373
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + +++ +++
Sbjct: 22 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKSIVRLQSSTDNGPG 81
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 82 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNA 141
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 142 AENMLEIL 149
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 192 TGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
+G PH + F V + EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 5 SGPPHMKSFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 50
>gi|62088702|dbj|BAD92798.1| staufen isoform b variant [Homo sapiens]
Length = 591
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 196 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 251
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 252 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 311
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 312 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 368
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 369 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 402
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 137 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 191
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 192 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 245
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 246 KSKKISKKNAAIAVLEELKKLP 267
>gi|82659087|ref|NP_059347.2| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Homo sapiens]
gi|90185286|sp|O95793.2|STAU1_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
gi|29792190|gb|AAH50432.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
gi|119596077|gb|EAW75671.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c
[Homo sapiens]
gi|119596079|gb|EAW75673.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c
[Homo sapiens]
gi|168277710|dbj|BAG10833.1| double-stranded RNA-binding protein Staufen homolog 1 [synthetic
construct]
gi|190690419|gb|ACE86984.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein
[synthetic construct]
gi|190691797|gb|ACE87673.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein
[synthetic construct]
Length = 577
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|114682565|ref|XP_514710.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 8 [Pan troglodytes]
gi|397475817|ref|XP_003809316.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Pan paniscus]
gi|410226896|gb|JAA10667.1| staufen, RNA binding protein, homolog 1 [Pan troglodytes]
gi|410267116|gb|JAA21524.1| staufen, RNA binding protein, homolog 1 [Pan troglodytes]
gi|410299212|gb|JAA28206.1| staufen, RNA binding protein, homolog 1 [Pan troglodytes]
Length = 577
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|158256406|dbj|BAF84176.1| unnamed protein product [Homo sapiens]
Length = 577
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|432110219|gb|ELK33992.1| Double-stranded RNA-binding protein Staufen like protein 1 [Myotis
davidii]
Length = 731
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 276 NKSEISQVFEIALKRNLPVNFEVARETGPPHMKSFVTKVSVGE----FVGEGEGKSKKIS 331
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA ++L++L + R ++ + + + +V+ NP+ +L +
Sbjct: 332 KKNAAIAILEELKKLPPLPVVERVKPRIKKKTKPIVRVQSGPEHGQVMNPISKLAQIQQA 391
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 392 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 448
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 449 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 482
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 217 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 271
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E TG PH + F V + EG G
Sbjct: 272 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARETGPPHMKSFVTKVSVGEFVGEGEG 325
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 326 KSKKISKKNAAIAILEELKKLP 347
>gi|328710263|ref|XP_003244208.1| PREDICTED: hypothetical protein LOC100575225 [Acyrthosiphon pisum]
Length = 407
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 74/196 (37%), Gaps = 55/196 (28%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG------ 148
Y L+ I G ++PIF Y ++ A+G GKSKKEAK NAA + ++L
Sbjct: 13 YVLVAITGHAHKPIFTYMC----QTHNMKALGEGKSKKEAKQNAAAQMCEKLFNFKIDSV 68
Query: 149 ----------------------------------------RDDEKLMCQKENLFKV---E 165
DDE+L K ++ +
Sbjct: 69 NDSDKFISSTTTTDNSEVSENDTFFNSTEGSQTIDETNSDMDDEELQQFKYEAVQIAHCD 128
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKS--KKIAKR 223
NP+G LQE C T KW PP Y E E V+ MG KK AKR
Sbjct: 129 MNPIGALQELCTTYKWTPPFYSFEILKKDLSEFKVLYKVTCEVFHLHTMGTDSFKKGAKR 188
Query: 224 EAALNMLKFLETVPIE 239
+AA M + + + IE
Sbjct: 189 KAARLMYEKIFDIGIE 204
>gi|339255120|ref|XP_003371063.1| ribosome biogenesis protein BOP1 [Trichinella spiralis]
gi|316962794|gb|EFV48776.1| ribosome biogenesis protein BOP1 [Trichinella spiralis]
Length = 292
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N G ++P+SL+ E+ ++G P YEL+ +G + +F YR+ + S V+ G GKSK
Sbjct: 199 NKGVKSPLSLLHEICGKKGLTPMYELLTSQGQGVDSLFVYRLCIDS----VVSTGRGKSK 254
Query: 132 KEAKHNAAKSVLDQLIGRDDEK 153
K AK NAA + L ++ + + +
Sbjct: 255 KLAKQNAALNWLMMIVEQGNHR 276
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 155 MCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGM 214
M E K +P+ L E C +K P+YE + G + +F ++ G
Sbjct: 192 MTTAEGCNKGVKSPLSLLHEIC-GKKGLTPMYELLTSQGQGVDSLFVYRLCIDSVVSTGR 250
Query: 215 GKSKKIAKREAALNMLKFL 233
GKSKK+AK+ AALN L +
Sbjct: 251 GKSKKLAKQNAALNWLMMI 269
>gi|345328234|ref|XP_001507143.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Ornithorhynchus anatinus]
Length = 695
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ + G GKSKK +
Sbjct: 276 NKSEISQVFEIALKRNMPVNFEVTKENGPPHMKSFLTKVSVGE----FTGEGEGKSKKIS 331
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + + ++ + +++ K+ NP+ +L +
Sbjct: 332 KKNAAIAVLEELKKLPPLPTVEKMKPRIKKKTKSIVKLPTSPEYGQGMNPISRLAQIQQA 391
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + + V+ EG G +KK+AKR AA NML+ L
Sbjct: 392 KKEREPEYLLVTERGLPRRREFVMQVKIGVHTTEGAGTNKKVAKRNAAENMLELL 446
>gi|410953580|ref|XP_003983448.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 4 [Felis catus]
Length = 502
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + +++ +++
Sbjct: 150 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQSSTDYGQG 209
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 210 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNA 269
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 270 AENMLEIL 277
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI-----------GRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L L GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFS--GKGKTRQAAKHDAAAKALRTLQSEPPPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYK 210
+ENL K E + Q+ E + R P P+ + +G PH + F V +
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNLPVNFESFPLNQVARESGPPHMKSFVTKVSVGEFV 151
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVP 237
EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 152 GEGEGKSKKISKKNAAIAVLEELKKLP 178
>gi|82469838|gb|ABB77177.1| R2D2 [Drosophila melanogaster]
Length = 311
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 46/184 (25%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV---------AI 125
+++ VS +QE +R IN P + + + E YV A+
Sbjct: 3 NKSAVSALQEFCAR-------------TQINLPTYSF---IPGEDGGYVCKVELLEIEAL 46
Query: 126 GSGKSKKEAKHNAAKSVL--------------DQLIGRDDEKLMCQKENLFKVEPNPVGQ 171
G+G+SK++AKH AA ++L D +G DE+L ++ K +
Sbjct: 47 GNGRSKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDLDEELTNLNRDMVK-------E 99
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
L++ C+ R+ P P E + +G P F C V G KK A++ AA+ ML
Sbjct: 100 LRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLA 159
Query: 232 FLET 235
+ +
Sbjct: 160 LISS 163
>gi|383862707|ref|XP_003706825.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Megachile rotundata]
Length = 782
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 140/349 (40%), Gaps = 59/349 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PVSL+ E + G +E++ G + F+ + ++ + V G G SKK +K
Sbjct: 400 KSPVSLVYEKALKHGLPVSFEVVSEIGKPHIRTFRTKCTVGDK----VTFGEGPSKKVSK 455
Query: 136 HNAAKSVLDQL----------------IGRDDEKLMCQKENLFK--VEP----------N 167
+AA+ +L++L + R + NL K EP N
Sbjct: 456 RHAAEFMLEELSRLPPLPETIQNRPRRMKRKPPATKKKSRNLIKDYQEPRSEAEGTEEVN 515
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PV +L + ++ PVY E G R F + + + +G+G +KK+AKR AA
Sbjct: 516 PVSRLVQIQQAKREKEPVYNLIEEKGASRRREFVIEVTMGQHSAQGIGPNKKLAKRAAAE 575
Query: 228 NMLKFLETVPIEIPEKKQGEDVDEKGES-NGLKHTHDSTFLTPQILKKIQQYH----TVF 282
+L L P+ + + + GES N + TFL + + + Q + T+
Sbjct: 576 ALLTQLG---YSKPQPQPTKPSIKTGESENTEQKPRKVTFLEDEQINETQSHQPVGGTIG 632
Query: 283 SQKTKGPLL-------------------EKLLSTRNLIDEVEDPILYLEDLSDELKYRVS 323
Q G LL E+L + P L+ LS + V
Sbjct: 633 RQLVPGLLLVDGGQESKLGSGPSVQIVAEELRGQQQQNPATVSPKDQLKYLSQLFNFSVE 692
Query: 324 FVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
F D + + + SL+ L+T P V G G + ++ +A +AL L
Sbjct: 693 FNDFPKGAVNKEYLSLVTLSTDPPQVCHGNGPTRTASRNQAALKALRTL 741
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 31/216 (14%)
Query: 54 STNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAP--KYELIQIEGAINEPIFKY 111
+ NLP L + + G+ T S + L G+ P + L + N Y
Sbjct: 269 GSGNLP--PTVELNALAMKRGEPTVYSFL--LAPVPGSQPYLAHNLGHLPRIFNPRFPTY 324
Query: 112 RISLTSESRLYVA---------IGSGKSKKEAKHNAAKSVLDQL-------------IGR 149
+E +LY+ IG G + + A+HNAA L+QL
Sbjct: 325 NRGFHAEPQLYIVSLKVGEREFIGRGITGQAARHNAASKALEQLRQLPIPEEVANTCTTG 384
Query: 150 DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ L K+ + +++ +PV + E + P +E G PH R F V
Sbjct: 385 ENGTLGETKDPIAELK-SPVSLVYEKALKHGLPV-SFEVVSEIGKPHIRTFRTKCTVGDK 442
Query: 210 KEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQ 245
G G SKK++KR AA ML+ L +P +PE Q
Sbjct: 443 VTFGEGPSKKVSKRHAAEFMLEELSRLP-PLPETIQ 477
>gi|82659083|ref|NP_004593.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
[Homo sapiens]
gi|82659085|ref|NP_059346.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
[Homo sapiens]
gi|82659089|ref|NP_059348.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
[Homo sapiens]
gi|13276703|emb|CAB66536.1| hypothetical protein [Homo sapiens]
gi|63102431|gb|AAH95397.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
gi|119596075|gb|EAW75669.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
[Homo sapiens]
gi|119596078|gb|EAW75672.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
[Homo sapiens]
gi|119596080|gb|EAW75674.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
[Homo sapiens]
gi|158259179|dbj|BAF85548.1| unnamed protein product [Homo sapiens]
Length = 496
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 101 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 156
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 157 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 216
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 217 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEIL 271
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 150
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 KSKKISKKNAAIAVLEELKKLP 172
>gi|388490178|ref|NP_001253237.1| double-stranded RNA-binding protein Staufen homolog 1 [Macaca
mulatta]
gi|383409091|gb|AFH27759.1| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Macaca mulatta]
gi|384949036|gb|AFI38123.1| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Macaca mulatta]
gi|387540218|gb|AFJ70736.1| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Macaca mulatta]
Length = 577
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|355563051|gb|EHH19613.1| Double-stranded RNA-binding protein Staufen-like protein 1 [Macaca
mulatta]
gi|355784408|gb|EHH65259.1| Double-stranded RNA-binding protein Staufen-like protein 1 [Macaca
fascicularis]
Length = 573
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|24582609|ref|NP_609152.1| r2d2, isoform A [Drosophila melanogaster]
gi|281364575|ref|NP_001162903.1| r2d2, isoform B [Drosophila melanogaster]
gi|7297298|gb|AAF52561.1| r2d2, isoform A [Drosophila melanogaster]
gi|48958433|gb|AAT47770.1| LD06392p [Drosophila melanogaster]
gi|82469830|gb|ABB77173.1| R2D2 [Drosophila melanogaster]
gi|272406933|gb|ACZ94194.1| r2d2, isoform B [Drosophila melanogaster]
Length = 311
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 46/184 (25%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV---------AI 125
+++ VS +QE +R IN P + + + E YV A+
Sbjct: 3 NKSAVSALQEFCAR-------------TQINLPTYSF---IPGEDGGYVCKVELLEIEAL 46
Query: 126 GSGKSKKEAKHNAAKSVL--------------DQLIGRDDEKLMCQKENLFKVEPNPVGQ 171
G+G+SK++AKH AA ++L D +G DE+L ++ K +
Sbjct: 47 GNGRSKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDLDEELTNLNRDMVK-------E 99
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
L++ C+ R+ P P E + +G P F C V G KK A++ AA+ ML
Sbjct: 100 LRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLA 159
Query: 232 FLET 235
+ +
Sbjct: 160 LISS 163
>gi|6730350|pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed With
Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
Interactions
gi|6730351|pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed With
Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
Interactions
Length = 69
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PVG LQE + + W P Y + +G PH+R FT+ V + E G G SK++AKR AA
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAE 61
Query: 228 NMLKFLET 235
+L +T
Sbjct: 62 KLLTKFKT 69
>gi|403282329|ref|XP_003932604.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Saimiri boliviensis boliviensis]
Length = 577
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKPIVKPQTTPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|224046380|ref|XP_002199282.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Taeniopygia guttata]
gi|449494254|ref|XP_004175288.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Taeniopygia guttata]
Length = 680
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 140/355 (39%), Gaps = 63/355 (17%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +S++ E+ +R +E+I+ G + F R+++ + A G G SKK
Sbjct: 276 ANKSEISVVFEIALKRNIPVTFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSKKL 331
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTR 179
+K AA +VL +L ++ + + FK P NP+ +L + +
Sbjct: 332 SKKRAAMAVLQELKKLPPLPVIEKPKLYFKKRPKTILKTGPEYGQGMNPISRLAQIQQAK 391
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETV 236
K P Y G+P R F + V G G +KKIAKR AA M L + +
Sbjct: 392 KEKEPEYVLLSERGMPRRREFVMQVKVGNDTTTGTGPNKKIAKRNAAEAMLLQLGYKAST 451
Query: 237 PIEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQQYH---------TVF 282
P++ +K GE+ G++ G +T L+P + ++++ +
Sbjct: 452 PLQDQTEKLGENKSWNGQNVGFPEPTSNTPKGILHLSPDVYQEMEASRNKSAPGTTVSYM 511
Query: 283 SQKTKGPLLEKLLS-----------TRNLIDEVEDPILYLEDL--------------SDE 317
S K S R L+ P L S +
Sbjct: 512 SSKEMSQTSSSFFSISPTTNSTATIARELLMNGTSPTAEAIGLKGVSPTSPCSTVQPSKQ 571
Query: 318 LKY--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRAL 369
L+Y R+ + + +G + L LT +PV + F G G+SIE + +A AL
Sbjct: 572 LEYLARIQGFQVHYSDRQNGKECLTCLTLSPVQMTFQGIGSSIEASHDQAALSAL 626
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQKENLFKVEPNPVGQLQEACMT----- 178
G GK+++ A+HNAA L L EKL E + E + E +
Sbjct: 230 FGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKESEEDKDANKSEISVVFEIAL 289
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
++ P +E + +G PH + F V + EG G SKK++K+ AA+ +L+ L+ +P
Sbjct: 290 KRNIPVTFEVIKESGPPHMKSFVTRVTVGEFTAEGEGNSKKLSKKRAAMAVLQELKKLP 348
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 41/260 (15%)
Query: 17 INMPSTVSLDCNEVKVEENSPSRVLFDNNEIKQIPKVSTNNLPLEEAARLEVMRLNTGDR 76
+++PS+++ +E +SP+ L D + P +N+ N ++
Sbjct: 32 LSLPSSMNGSISESAASCSSPTASLVDPTSLINSPAPLQDNM------------ANPKEK 79
Query: 77 TPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
TP+ L+ EL P+Y+L+ G + +F +++L ++ + A GS S K+A+H
Sbjct: 80 TPMCLVNELARFNRIQPQYKLLNERGPAHAKMFTVQLTLGEQT--WEAEGS--SIKKAQH 135
Query: 137 NAAKSVLDQ-LIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLP 195
AA L++ + + + N P +L M R P +Y + +P
Sbjct: 136 AAASKALNETTLPKPTPRPPKNNVNNNPGSITPTVELNGLAMKRGE-PAIYRPLDPKPIP 194
Query: 196 HER-------------------MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
+ R +F V V + G GK+++ A+ AA+ L+ L+
Sbjct: 195 NYRANYNFRGMYNQRYHCPVPKVFYVQLTVGNSEFFGEGKTRQAARHNAAMKALQALQNE 254
Query: 237 PIEIPEK--KQGEDVDEKGE 254
P IPEK + GE E E
Sbjct: 255 P--IPEKLPQNGETGKESEE 272
>gi|351703077|gb|EHB05996.1| Double-stranded RNA-binding protein Staufen-like protein 1
[Heterocephalus glaber]
Length = 573
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/381 (23%), Positives = 157/381 (41%), Gaps = 87/381 (22%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ ++ G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FIGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + K++ NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPTGKLQTSPEYGQGMNPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL----- 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYILLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVP 357
Query: 234 ---ETVPI-----EIPEKKQGEDVD------EKGESNGLKHTHDS---TFLT-------- 268
T P + P KK G+ G+ NG H D +L+
Sbjct: 358 QAQPTKPALKSEEKTPVKKPGDGRKVTFFEPGSGDENGTSHKEDEFRMPYLSHQQLPAGI 417
Query: 269 ----PQILKKI---QQYHTV-FSQKTKGP--------LLEKLLST----------RNLID 302
P++ + + Q +HT FS+ P + +LL +N I
Sbjct: 418 LPMVPEVAQAVGVSQGHHTKDFSRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNIS 477
Query: 303 EVEDPILYLEDLSDELKY-------RVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGA 355
P L S++L Y +V + D + +K + F SL+ ++ P + G G
Sbjct: 478 SGHVPHGPLTRPSEQLDYLSTVQGFQVEYKDFPKNNKNE-FVSLINCSSQPPLISHGIGK 536
Query: 356 SIEVAKIEAVYRALDFLQIMN 376
+E A AL+ L++++
Sbjct: 537 DVESCHDMA---ALNILKLLS 554
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEMNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTRVSVGEFIGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|296200670|ref|XP_002747678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Callithrix jacchus]
Length = 577
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTTPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|313233857|emb|CBY10026.1| unnamed protein product [Oikopleura dioica]
Length = 500
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 77 TPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
PV L+QEL+ + G P+Y+ G P F + + L + A SG K EAK
Sbjct: 324 NPVGLLQELMQKNGLQTPEYK----SGGEACPPFSWHVRLPHTGQSCTA--SGNKKAEAK 377
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVY-ETEETTGL 194
NAA+ ++ QL + Q + +V +PV +LQE R P Y G
Sbjct: 378 GNAARRMIAQLKEHGIHQPASQPDKNHEVNRHPVSELQEYLQQRHISAPAYFFIPHDGGY 437
Query: 195 PHERMFTV-CAY--VNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
H + FT C +N+ +E K++KIA++ AA MLK L + I
Sbjct: 438 EHLKEFTCKCTIDELNLQVKE-RRKNQKIARKAAATQMLKDLLKIKI 483
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 147 IGRDDEKLMCQKENLFKVEPNPVGQ-----LQEACMTRKWPPPVYETEETTGLPHERMFT 201
I +DDE ++ P P G+ LQE R P+Y+T+ G P FT
Sbjct: 210 IKKDDEVMV----------PLPPGKTAISVLQEMMQKRGASVPIYKTKGGAGPP----FT 255
Query: 202 VCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHT 261
+ ++ E G SKK AK AA +MLK L E + G K + H+
Sbjct: 256 IVCQIDDMSTEATGNSKKEAKHRAASSMLKNLH----ENVNRAPGAPTQIKALDSSKNHS 311
Query: 262 HDSTFLTPQ 270
HD + + P+
Sbjct: 312 HDVSEVEPK 320
>gi|323387830|gb|ADX60058.1| tar RNA binding protein [Procambarus clarkii]
Length = 59
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 60 LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIF 109
++ + +E M +TPVSL+QEL RRG +PKY+L+QIEGA++EP F
Sbjct: 9 VDSSTSIEGMPGALPSKTPVSLLQELCMRRGISPKYDLLQIEGAVHEPTF 58
>gi|348564126|ref|XP_003467856.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
Staufen homolog 1-like [Cavia porcellus]
Length = 715
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 222 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 277
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + K++ NP+ +L +
Sbjct: 278 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPAGKLQTSPEYGQGMNPISRLAQIQQA 337
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 338 KKEKEPEYLLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEIL 392
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 163 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEMNGRESE--- 217
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 218 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTRVSVGEFVGEGEG 271
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 272 KSKKISKKNAAIAVLEELKKLP 293
>gi|162287083|ref|NP_001104742.1| double-stranded RNA-binding protein Staufen homolog 2 isoform 2
[Mus musculus]
gi|23507045|gb|AAN37929.1|AF459100_1 double-stranded RNA-binding protein Staufen2 short isoform [Mus
musculus]
Length = 538
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 27/235 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKT 286
++ P K GE+ G G ++T L+P + ++++ H V S T
Sbjct: 349 LQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTT 403
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|224613372|gb|ACN60265.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
Length = 416
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 79/182 (43%), Gaps = 36/182 (19%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------- 166
+ G GKSKK AK AA +VL++L +L ++ K++P
Sbjct: 29 FCGEGEGKSKKIAKKLAATAVLEEL-----RRLPQLSPSVEKIQPARIKKKTKSIIKLQT 83
Query: 167 --------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
NP+ +L + +K P Y GLP R F + V + EGMG SK
Sbjct: 84 SPEYGQGMNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGHCAEGMGPSK 143
Query: 219 KIAKREAALNMLKFLE-TVPIEIPEK---KQGEDVDEKGESNGLKHTHDSTFLTPQILKK 274
K+AKR AA ML+ L VP P K K E V +K +G K TF P +++
Sbjct: 144 KVAKRNAAEKMLELLGFKVPPPQPHKPALKTDERVPQKKNGDGRK----VTFFEPGSVEE 199
Query: 275 IQ 276
Q
Sbjct: 200 SQ 201
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 186 YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
+E + G PH + F VC V + EG GKSKKIAK+ AA +L+ L +P
Sbjct: 6 FEVLKEAGPPHMKSFMVCVSVGEFCGEGEGKSKKIAKKLAATAVLEELRRLP 57
>gi|312374421|gb|EFR21981.1| hypothetical protein AND_15950 [Anopheles darlingi]
Length = 306
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 23/180 (12%)
Query: 76 RTPVSLMQEL-LSRRGTAPKYELIQIEGAINEPI------FKYRISLTSESRLYVAIGSG 128
+TPV+++QE+ + +R P Y+ + G P+ F++++ + A+G G
Sbjct: 11 KTPVTMLQEICMGKRVPTPTYQYL---GESTSPLGPNVKTFQHKVLTMGQE----AMGLG 63
Query: 129 KSKKEAKHNAAKSVLDQLIG----RDDEKLMCQKENLFKVEPNPVG-----QLQEACMTR 179
+SK+++KH AA ++ L+ D+ + + + P VG Q+++ C+ R
Sbjct: 64 RSKQDSKHEAAWQMIRLLLDIPPDEDEREGVVSSGGTAEDAPLDVGIDKVSQVRDICVQR 123
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE 239
+P P +E + G H +F + G +KK AK+ A M+K L+ +P+E
Sbjct: 124 NFPLPEFELVRSYGPSHAPVFEFECRIRDIVRRGSHSTKKGAKQIACQEMIKTLQAMPVE 183
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 155 MCQKENLFKVEPNPVGQLQEACMTRKWPPPVYE--TEETTGL-PHERMFTVCAYVNVYKE 211
M +KE + + + PV LQE CM ++ P P Y+ E T+ L P+ + F +
Sbjct: 1 MTKKETVLRGK-TPVTMLQEICMGKRVPTPTYQYLGESTSPLGPNVKTFQHKVLTMGQEA 59
Query: 212 EGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKG 253
G+G+SK+ +K EAA M++ L +P P++ + E V G
Sbjct: 60 MGLGRSKQDSKHEAAWQMIRLLLDIP---PDEDEREGVVSSG 98
>gi|449494258|ref|XP_004175289.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Taeniopygia guttata]
Length = 570
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 140/354 (39%), Gaps = 63/354 (17%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S++ E+ +R +E+I+ G + F R+++ + A G G SKK +
Sbjct: 167 NKSEISVVFEIALKRNIPVTFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSKKLS 222
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 223 KKRAAMAVLQELKKLPPLPVIEKPKLYFKKRPKTILKTGPEYGQGMNPISRLAQIQQAKK 282
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAKR AA M L + + P
Sbjct: 283 EKEPEYVLLSERGMPRRREFVMQVKVGNDTTTGTGPNKKIAKRNAAEAMLLQLGYKASTP 342
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQQYH---------TVFS 283
++ +K GE+ G++ G +T L+P + ++++ + S
Sbjct: 343 LQDQTEKLGENKSWNGQNVGFPEPTSNTPKGILHLSPDVYQEMEASRNKSAPGTTVSYMS 402
Query: 284 QKTKGPLLEKLLS-----------TRNLIDEVEDPILYLEDL--------------SDEL 318
K S R L+ P L S +L
Sbjct: 403 SKEMSQTSSSFFSISPTTNSTATIARELLMNGTSPTAEAIGLKGVSPTSPCSTVQPSKQL 462
Query: 319 KY--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRAL 369
+Y R+ + + +G + L LT +PV + F G G+SIE + +A AL
Sbjct: 463 EYLARIQGFQVHYSDRQNGKECLTCLTLSPVQMTFQGIGSSIEASHDQAALSAL 516
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQKENLFKVEPNPVGQLQEACMT----- 178
G GK+++ A+HNAA L L EKL E + E + E +
Sbjct: 120 FGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKESEEDKDANKSEISVVFEIAL 179
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
++ P +E + +G PH + F V + EG G SKK++K+ AA+ +L+ L+ +P
Sbjct: 180 KRNIPVTFEVIKESGPPHMKSFVTRVTVGEFTAEGEGNSKKLSKKRAAMAVLQELKKLP 238
>gi|193787146|dbj|BAG52352.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + + + K +
Sbjct: 13 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQG 72
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 73 INPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNA 132
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 133 AENMLEIL 140
>gi|380788007|gb|AFE65879.1| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Macaca mulatta]
Length = 496
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 101 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 156
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 157 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 216
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 217 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEIL 271
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 150
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 KSKKISKKNAAIAVLEELKKLP 172
>gi|119596076|gb|EAW75670.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_b
[Homo sapiens]
Length = 317
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 101 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 156
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 157 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 216
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 217 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEIL 271
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 150
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 KSKKISKKNAAIAVLEELKKLP 172
>gi|195034168|ref|XP_001988838.1| GH10357 [Drosophila grimshawi]
gi|193904838|gb|EDW03705.1| GH10357 [Drosophila grimshawi]
Length = 317
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 23/171 (13%)
Query: 75 DRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE S+ T P Y+ I E E + ++ L A G+G+SK++
Sbjct: 3 NKSSVSALQEFCSQAKTGNPFYDYIDGE----EGGYICKVVLMDVE----AYGNGRSKRD 54
Query: 134 AKHNAAKSVLDQL--------------IGRDDEKLMCQKENLFKVEPNPVGQLQEACMTR 179
AKH AA +++ +L G D+ + + E L + + + +L++ C+ +
Sbjct: 55 AKHLAATNIMRKLPNLAGSGLAAGSDADGSDNFNVNKKAEELTNMNRDMLKELRDYCVRQ 114
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
P P E + +G P F C V K G KK A++ AA+ ML
Sbjct: 115 DMPLPTIEIVQQSGTPSAPEFVACCSVASIKRYGKSDKKKDARQRAAIEML 165
>gi|19264083|gb|AAH25118.1| Stau2 protein [Mus musculus]
Length = 479
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 27/235 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKT 286
++ P K GE+ G G ++T L+P + ++++ H V S T
Sbjct: 349 LQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTT 403
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|223648210|gb|ACN10863.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
Length = 706
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 100/229 (43%), Gaps = 40/229 (17%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+++ G + F +S+ + G GKSKK A
Sbjct: 276 NKSEISQVFEIALKRNMPVNFEVLKEAGPPHMKSFMVCVSVGE----FCGEGEGKSKKIA 331
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP-----------------------NPVGQ 171
K AA +VL++L +L ++ K++P NP+ +
Sbjct: 332 KKLAATAVLEEL-----RRLPQLSPSVEKIQPARIKKKTKSIIKLQTSPEYGQGMNPISR 386
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
L + +K P Y GLP R F + V + EGMG SKK+AKR AA ML+
Sbjct: 387 LAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGHCAEGMGPSKKVAKRNAAEKMLE 446
Query: 232 FLE-TVPIEIPEK---KQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQ 276
L VP P K K E V +K +G K TF P +++ Q
Sbjct: 447 LLGFKVPPPQPHKPALKTDERVPQKKNGDGRK----VTFFEPGSVEESQ 491
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK---------ENLFKVEPNPVGQLQEAC 176
G G++++ AKH+AA L L E ++ Q+ EN K E + Q+ E
Sbjct: 234 GKGRTRQLAKHDAAAKALKTL---QKEPILLQQLPETNGEDTENFNKSE---ISQVFEIA 287
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
+ R P +E + G PH + F VC V + EG GKSKKIAK+ AA +L+ L +
Sbjct: 288 LKRNM-PVNFEVLKEAGPPHMKSFMVCVSVGEFCGEGEGKSKKIAKKLAATAVLEELRRL 346
Query: 237 P 237
P
Sbjct: 347 P 347
>gi|194018455|ref|NP_079579.2| double-stranded RNA-binding protein Staufen homolog 2 isoform 3
[Mus musculus]
gi|73919459|sp|Q8CJ67.1|STAU2_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
gi|23507043|gb|AAN37928.1|AF459099_1 double-stranded RNA-binding protein Staufen2 long isoform [Mus
musculus]
Length = 570
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 27/235 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKT 286
++ P K GE+ G G ++T L+P + ++++ H V S T
Sbjct: 381 LQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTT 435
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|332240606|ref|XP_003269478.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Nomascus leucogenys]
Length = 570
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQL------IGRDDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L G + KL +K + + K P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPGVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|16307507|gb|AAH10300.1| Stau2 protein, partial [Mus musculus]
Length = 533
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 27/235 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 168 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 223
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 224 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARK 283
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 284 EKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 343
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKT 286
++ P K GE+ G G ++T L+P + ++++ H V S T
Sbjct: 344 LQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTT 398
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 121 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 177
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 178 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 236
Query: 235 TVP 237
+P
Sbjct: 237 KLP 239
>gi|390480854|ref|XP_002763865.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Callithrix jacchus]
Length = 491
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 185 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 240
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 241 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 300
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 301 EKEPDYVLLSERGMPRRREFMMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 360
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ P K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 361 LQDPLDKGGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTIGYLS 420
Query: 292 EK 293
K
Sbjct: 421 PK 422
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
+G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 138 LGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSE---ISLVFE 194
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 195 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 253
Query: 235 TVP 237
+P
Sbjct: 254 KLP 256
>gi|441647443|ref|XP_004090811.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Nomascus leucogenys]
Length = 504
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQL------IGRDDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L G + KL +K + + K P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPGVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EK 293
K
Sbjct: 337 PK 338
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|33469621|gb|AAQ19853.1| staufen [Xenopus laevis]
Length = 712
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
++ G GKSKK +K NAA +VL++L + + K+ + +++ K+
Sbjct: 337 FLGEGEGKSKKISKKNAAIAVLEELRKLPPLPTVEKMRPKIKKKTKSIVKLPTSPEYGQG 396
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 397 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHAAEGSGTNKKVAKRNA 456
Query: 226 ALNMLKFL----------------ETVPIEIPEKKQGEDVDEKGES-NGLKHTHDSTFLT 268
A NML+ L E +P++ P + E G +G H D F
Sbjct: 457 AENMLEILGFKVPPPPPKPALKTEEKLPVKKPGDGRKVTFYEPGSGEDGANHNKDDEFRM 516
Query: 269 P 269
P
Sbjct: 517 P 517
>gi|49256219|gb|AAH74253.1| Stau1 protein [Xenopus laevis]
gi|83405197|gb|AAI10922.1| Stau1 protein [Xenopus laevis]
Length = 708
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
++ G GKSKK +K NAA +VL++L + + K+ + +++ K+
Sbjct: 333 FLGEGEGKSKKISKKNAAIAVLEELRKLPPLPTVEKMRPKIKKKTKSIVKLPTSPEYGQG 392
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 393 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHAAEGSGTNKKVAKRNA 452
Query: 226 ALNMLKFL----------------ETVPIEIPEKKQGEDVDEKGES-NGLKHTHDSTFLT 268
A NML+ L E +P++ P + E G +G H D F
Sbjct: 453 AENMLEILGFKVPPPPPKPALKTEEKLPVKKPGDGRKVTFYEPGSGEDGANHNKDDEFRM 512
Query: 269 P 269
P
Sbjct: 513 P 513
>gi|82469836|gb|ABB77176.1| R2D2 [Drosophila melanogaster]
Length = 311
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 32/177 (18%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV---------AI 125
+++ VS +QE +R IN P + + + E YV AI
Sbjct: 3 NKSAVSALQEFCAR-------------TQINLPTYSF---IPGEDGGYVCKVELLEIEAI 46
Query: 126 GSGKSKKEAKHNAAKSVLD--QLIG-----RDDEKLMCQKENLFKVEPNPVGQLQEACMT 178
G+G+SK++AKH AA ++L QL+ D + E L + + V +L++ C+
Sbjct: 47 GNGRSKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDLGEELTNLNRDMVKELRDYCVR 106
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
R+ P P E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 107 REMPLPCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|148235090|ref|NP_001085239.1| double-stranded RNA-binding protein Staufen homolog 1 [Xenopus
laevis]
gi|56698874|gb|AAW23135.1| Staufen 1 [Xenopus laevis]
Length = 718
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
++ G GKSKK +K NAA +VL++L + + K+ + +++ K+
Sbjct: 343 FLGEGEGKSKKISKKNAAIAVLEELRKLPPLPTVEKMRPKIKKKTKSIVKLPTSPEYGQG 402
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 403 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHAAEGSGTNKKVAKRNA 462
Query: 226 ALNMLKFL----------------ETVPIEIPEKKQGEDVDEKGES-NGLKHTHDSTFLT 268
A NML+ L E +P++ P + E G +G H D F
Sbjct: 463 AENMLEILGFKVPPPPPKPALKTEEKLPVKKPGDGRKVTFYEPGSGEDGANHNKDDEFRM 522
Query: 269 P 269
P
Sbjct: 523 P 523
>gi|114682575|ref|XP_001166678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 3 [Pan troglodytes]
Length = 502
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + + + K +
Sbjct: 150 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQG 209
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 210 INPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNA 269
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 270 AENMLEIL 277
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYK 210
+ENL K E + Q+ E + R P P+ + +G PH + F V +
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFV 151
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVP 237
EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 152 GEGEGKSKKISKKNAAIAVLEELKKLP 178
>gi|82659091|ref|NP_001032405.1| double-stranded RNA-binding protein Staufen homolog 1 isoform c
[Homo sapiens]
gi|45758713|gb|AAS76636.1| staufen protein T5 variant [Homo sapiens]
gi|45758715|gb|AAS76637.1| staufen protein T4 variant [Homo sapiens]
Length = 502
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + + + K +
Sbjct: 150 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQG 209
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 210 INPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNA 269
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 270 AENMLEIL 277
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYK 210
+ENL K E + Q+ E + R P P+ + +G PH + F V +
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFV 151
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVP 237
EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 152 GEGEGKSKKISKKNAAIAVLEELKKLP 178
>gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
Length = 377
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
V+ T D PV+ + EL + G ++E Q G +F + E V +GS
Sbjct: 207 VITAETVDEQPVTTLHELCQKHGKVAQFETWQKGGMTMVNVF-----VGGE---MVGLGS 258
Query: 128 GKSKKEAKHNAAKSVLDQLIGRDDEKLMCQ--KENLFK--VEPNPVGQ-LQEACMTRKWP 182
+ K AK NAA+ L +LIG ++++ L VE Q L E C+ + WP
Sbjct: 259 SEQKVIAKLNAARDALGKLIGGAKQQVLINGIANGLVDEIVELRECKQKLTEQCIGKHWP 318
Query: 183 PPVYETEETTGLPHERMFTVCA 204
P+++ E+ G HER F VC+
Sbjct: 319 KPIFKLEKEGGPAHERNF-VCS 339
>gi|395829163|ref|XP_003787730.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Otolemur garnettii]
Length = 577
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIAKPQTGPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGSGTNKKVAKRNAAENMLEIL 352
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|405975425|gb|EKC39990.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Crassostrea gigas]
Length = 695
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 23/238 (9%)
Query: 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIA 221
+ V NP+ +L + ++ PVY GLP R F + V+ G+G +KK+A
Sbjct: 456 YGVGINPISRLIQIQQAQQKKEPVYTLLNERGLPRRREFVIQVQVDDQTCTGVGPNKKLA 515
Query: 222 KREAALNMLKFLE-TVPIEIPEKKQGEDVDEKGESNGLKHTH-----------------D 263
KR AA ML L P P K + + E G+K H
Sbjct: 516 KRHAAEAMLTLLGYNKPSPQPAKPAIKSASNQ-EETGMKKVHFQESTEDSESSSNSKSSG 574
Query: 264 STFLTPQILK-KIQQYH-TVFSQKTKGPL-LEKLLSTRNLIDEVEDPILYLEDLSDELKY 320
L P +L+ +Y+ TV+ Q G L+ + + + P +L +L+
Sbjct: 575 GRQLVPGLLRLPDNKYNGTVYRQPQGGTQPLDGHIGYNGISNTATRPEAHLRELTSRNNV 634
Query: 321 RVSFVDIEE-KSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
+ F + + + + S + L + P VF G+G S E+A+ A A+ FL+ + +
Sbjct: 635 DIKFDEFQSGQGTTSEYLSRVTLLSNPPRVFHGSGMSAELARDSAALEAMKFLEELGK 692
>gi|380797993|gb|AFE70872.1| double-stranded RNA-binding protein Staufen homolog 1 isoform c,
partial [Macaca mulatta]
Length = 390
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + + + K +
Sbjct: 38 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQG 97
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 98 INPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNA 157
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 158 AENMLEIL 165
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 184 PVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
P+ + +G PH + F V + EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 13 PLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 66
>gi|402882301|ref|XP_003904686.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Papio anubis]
Length = 365
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + + + K +
Sbjct: 13 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQG 72
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 73 INPISRLAQIQQAKKEKEPEYVLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNA 132
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 133 AENMLEIL 140
>gi|291388131|ref|XP_002710684.1| PREDICTED: staufen homolog 2 isoform 2 [Oryctolagus cuniculus]
Length = 504
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 140/354 (39%), Gaps = 63/354 (17%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLDKTGENKGWSGPKAGFPEPANNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EKLLS-------------------TRNLIDEVEDPILYLEDL--------------SDEL 318
K ++ R L+ P L S +L
Sbjct: 337 PKDMNQPSSSFFSISPTSNSSATIARELLMNGTSPTAEAIGLKGSSPTPPCSPVQPSKQL 396
Query: 319 KY--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRAL 369
+Y R+ + + G + + LT PV + F G G+SI+ + +A AL
Sbjct: 397 EYLARIQGFQVHYCDRQSGKECVTCLTLAPVQMTFHGIGSSIDASHDQAALSAL 450
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------------DDEKLMCQKENLFKVEPNP 168
G GK+++ A+HNAA L L DD+K + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEVDDDKDANKSE--------- 104
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
+ + E + R P +E + +G PH + F V + EG G SKK++K+ AA
Sbjct: 105 ISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATT 163
Query: 229 MLKFLETVP 237
+L+ L+ +P
Sbjct: 164 VLQELKKLP 172
>gi|296863417|pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For Mirna
Processing
Length = 88
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
VG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR AA
Sbjct: 18 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAK 77
Query: 229 MLKFLETVPIE 239
ML + TVP++
Sbjct: 78 MLLRVHTVPLD 88
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 79 VSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
V +QEL+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK N
Sbjct: 18 VGALQELVVQKGWRLPEYTVTQESG----PAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 73
Query: 138 AAKSVL 143
AA +L
Sbjct: 74 AAAKML 79
>gi|301754405|ref|XP_002913051.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Ailuropoda melanoleuca]
Length = 684
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L R ++ + +++ +++
Sbjct: 332 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTFERVKPRIKKKTKSIVRLQGSTDCSQG 391
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 392 MNPISRLAQIQQAKKEKEPEYLLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNA 451
Query: 226 ALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
A NML+ L ++P+ + + + E +K D TF P
Sbjct: 452 AENMLEILG---FKVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 495
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 33/154 (21%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVL------------------DQLIG 148
P Y++ L+ + + G GK+++ AKH+AA L +Q+ G
Sbjct: 217 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRTLQSEPLPERPEGRRPGEQVNG 274
Query: 149 RDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVC 203
R+ E +ENL K E + Q+ E + R P P+ + +G PH + F
Sbjct: 275 RESE-----EENLNKSE---ISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKSFVTR 326
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
V + EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 327 VSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 360
>gi|90076086|dbj|BAE87723.1| unnamed protein product [Macaca fascicularis]
Length = 502
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + + + K +
Sbjct: 150 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQG 209
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 210 INPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNA 269
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 270 AENMLEIL 277
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLM------CQKEN 160
P Y++ L+ + + G GK+++ AKH+AA L L + + ++EN
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGGESEEEN 99
Query: 161 LFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
L K E + Q+ E + R P P+ + +G PH + F V + EG G
Sbjct: 100 LNKSE---ISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEG 156
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 157 KSKKISKKNAAIAVLEELKKLP 178
>gi|426241597|ref|XP_004014676.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 2 [Ovis aries]
Length = 502
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + +++ +V
Sbjct: 150 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRVRTGPEYGQG 209
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK AKR A
Sbjct: 210 MNPISRLAQIQQAKKEKEPEYLLLAERGLPRRREFVMQVKVGNHTAEGSGTNKKAAKRNA 269
Query: 226 ALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
A NML+ L ++P+ + + + E +K D TF P
Sbjct: 270 AENMLEILG---FKVPQAQPSKPALKSEEKTPVKKPGDGRKVTFFEP 313
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLVYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQSEPPPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYK 210
+ENL K E + Q+ E + R P P+ + +G PH + F V +
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKSFVTRVSVGEFV 151
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVP 237
EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 152 GEGEGKSKKISKKNAAIAVLEELKKLP 178
>gi|195118471|ref|XP_002003760.1| GI21342 [Drosophila mojavensis]
gi|193914335|gb|EDW13202.1| GI21342 [Drosophila mojavensis]
Length = 318
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 24/172 (13%)
Query: 75 DRTPVSLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE ++ T +P YE I +GA + + ++ L A G+G+SK++
Sbjct: 3 NKSAVSALQEYCAQAKTGSPVYEYI--DGA--DVGYLCKVVLMDIE----AFGNGRSKRD 54
Query: 134 AKHNAAKSVLDQLI---------------GRDDEKLMCQKENLFKVEPNPVGQLQEACMT 178
AKH AA +++ +L G D+ + + L + + + +L++ C+
Sbjct: 55 AKHLAAANIIRKLRKIPGLSHFGTDGTDNGEDNCNIDSVADELTNMNRDMLKELRDYCVR 114
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
P PV E + +G P+ F C V K G KK A++ AA+ ML
Sbjct: 115 HDMPLPVIEIVQQSGSPNAPEFVACCSVASIKRYGKSDKKKDARQRAAIEML 166
>gi|291409985|ref|XP_002721271.1| PREDICTED: staufen [Oryctolagus cuniculus]
Length = 862
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 130/331 (39%), Gaps = 79/331 (23%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------N 167
+V G GKSKK +K NAA +VL++L R +L + + + P N
Sbjct: 516 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAAERTRPRLKKKTKPPGRTSPEYGQGMN 575
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
P+ +L + +K P Y GLP R F + V + EG G +KK+AKR AA
Sbjct: 576 PISRLAQIQQAKKEREPEYLLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAE 635
Query: 228 NMLKFL--------ETVPI-----EIPEKKQGE----------DVDEKGESNG------- 257
NML+ L T P + P KK G+ DE G SN
Sbjct: 636 NMLEILGFKVPQAQPTKPALKSEEKTPVKKPGDGRKVTFFEPGSGDENGTSNKEEEFRMP 695
Query: 258 -LKHTHDSTFLTP------QILKKIQQYHTV-FSQKTKGP--------LLEKLLST---- 297
L H + P Q + Q +HT FS+ P + +LL
Sbjct: 696 YLSHQQLPAGILPMVPEVAQAVGVSQGHHTRDFSRAAPNPAKATVTAMIARELLYGGSSP 755
Query: 298 ------RNLIDEVEDPILYLEDLSDELKY--RVSFVDIE----EKSKADGFQSLLQLTTT 345
+N I P L S++L Y RV +E K+ + F SL+ ++
Sbjct: 756 TAETVLKNNISSGHVPHGPLTRPSEQLDYLSRVQGFQVEYKDFPKNNKNEFVSLINCSSQ 815
Query: 346 PVTVFCGTGASIEVAKIEAVYRALDFLQIMN 376
P + G G +E A AL+ L++++
Sbjct: 816 PPLISHGIGKDVESCHDMA---ALNILKLLS 843
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 414 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 468
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH R F V + EG G
Sbjct: 469 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMRNFVTKVSVGEFVGEGEG 522
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 523 KSKKISKKNAAIAVLEELKKLP 544
>gi|82469834|gb|ABB77175.1| R2D2 [Drosophila melanogaster]
Length = 311
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 32/177 (18%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV---------AI 125
+++ VS +QE +R IN P + + + E YV AI
Sbjct: 3 NKSAVSALQEFCAR-------------TQINLPTYSF---IPGEDGGYVCKVELLEIEAI 46
Query: 126 GSGKSKKEAKHNAAKSVLD--QLIG-----RDDEKLMCQKENLFKVEPNPVGQLQEACMT 178
G+G+SK++AKH AA ++L QL+ D + E L + + V +L++ C+
Sbjct: 47 GNGRSKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDLGEELTNLNRDMVKELRDYCVR 106
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
R+ P P E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 107 REMPLPSIEIVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|332207755|ref|XP_003252961.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 3 [Nomascus leucogenys]
Length = 577
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMC--------QKENLFKVEPNPVGQLQEACMT 178
K NAA +VL++L + R ++ Q + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPVVKPQTSPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>gi|449275316|gb|EMC84189.1| Double-stranded RNA-binding protein Staufen like protein 2 [Columba
livia]
Length = 558
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 26/225 (11%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +S++ E+ +R +E+I+ G + F R+++ + A G G SKK
Sbjct: 239 ANKSEISVVFEIALKRNIPVSFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSKKL 294
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTR 179
+K AA +VL +L ++ + + FK P NP+ +L + +
Sbjct: 295 SKKRAAMAVLQELKKLPPLPVIEKPKLYFKKRPKPILKTGPEYGQGMNPISRLAQIQQAK 354
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETV 236
K P Y G+P R F + V G G +KKIAKR AA M L + +
Sbjct: 355 KEKEPEYVLLSERGMPRRREFVMQVKVGNEITTGTGPNKKIAKRNAAEAMLLQLGYKAST 414
Query: 237 PIEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ 276
P++ +K GE+ G++ G ++T L+P + ++++
Sbjct: 415 PLQDQSEKLGENKSWNGQNVGFPEPTNNTPKGILHLSPDVYQEME 459
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQKENLFKVEPNPVGQLQEACMT----- 178
G GK+++ A+HNAA L L EKL E + E + E +
Sbjct: 193 FGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKESEEDKDANKSEISVVFEIAL 252
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
++ P +E + +G PH + F V + EG G SKK++K+ AA+ +L+ L+ +P
Sbjct: 253 KRNIPVSFEVIKESGPPHMKSFVTRVTVGEFTAEGEGNSKKLSKKRAAMAVLQELKKLP 311
>gi|170027969|ref|XP_001841869.1| staufen [Culex quinquefasciatus]
gi|167868339|gb|EDS31722.1| staufen [Culex quinquefasciatus]
Length = 939
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 151/392 (38%), Gaps = 108/392 (27%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++P+SL+ EL +R A ++E+ +G + +F + + V G G KK +K
Sbjct: 535 KSPISLVHELALKRKMAVQFEVHSEKGPPHMKVFTTICKVGT----IVTEGEGNGKKISK 590
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE-------------------NLFKV----EP----NP 168
AA+ +LD+L R+ +K NL K +P NP
Sbjct: 591 KRAAEKMLDEL--RNLPPTSPEKNVRPPLKPKRKLPLPKKKTRNLIKENGEEDPLDMVNP 648
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
+ +L + RK P Y E G+ R F + + G+G +KKIAK+EAA +
Sbjct: 649 ISRLMQIQQARKEKEPEYTLVEERGMARRREFIMEVLASGKTASGVGPTKKIAKKEAAES 708
Query: 229 MLKFL----ETVPIEIP-----------------EKKQGEDVDEKGESNGLKHTHDSTFL 267
+L L TV + EKK G + E KH +
Sbjct: 709 LLVMLGYGRSTVAANVSSPNKENQSANANEGGGVEKKHGGRKAQYNEGGAAKHGGSAGR- 767
Query: 268 TPQILKKIQQYHTVFSQKTKGPLLE--------------------KLLSTRNL------- 300
QI+ + Q ++ S KT P+ E ++ST +
Sbjct: 768 --QIVPGVLQLNSGVSNKTNQPVKEPAQDAIDGGDIKPIAISVTKPVISTASSATTNVAA 825
Query: 301 --------------------IDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLL 340
+ ++ ++YL L LK+ V F D + + + + +L+
Sbjct: 826 SPPAATTTSATTGGSSSNPDVGRKKEQLMYLAQL---LKFEVMFSDFPKGNHGE-YLTLV 881
Query: 341 QLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
L+T P + G+GAS+E + EA ALD L
Sbjct: 882 TLSTDPPQLCHGSGASLEESHDEAARGALDIL 913
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 156 CQKENLFKVEPN-----PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK 210
C ++ +PN P+ + E + RK +E G PH ++FT V
Sbjct: 520 CHDTSIDSDDPNSELKSPISLVHELALKRKMAV-QFEVHSEKGPPHMKVFTTICKVGTIV 578
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVPIEIPEK 243
EG G KKI+K+ AA ML L +P PEK
Sbjct: 579 TEGEGNGKKISKKRAAEKMLDELRNLPPTSPEK 611
>gi|375161470|gb|AFA41503.1| stau [Laodelphax striatella]
Length = 743
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 138/367 (37%), Gaps = 80/367 (21%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++P+SL+ EL +R + +++I +G + F R + +V G G KK +K
Sbjct: 351 KSPISLVHELALKRNLSVTFQVIDEKGPPHMRTFVTRCQVADS---FVTTGEGNGKKISK 407
Query: 136 HNAAKSVLDQL--------------------IGRDDEKLMCQKENLFKV----------- 164
AA+ +L++L + R + NL +
Sbjct: 408 KRAAEKMLEELRTLPPTTTVNASGLSGSMNRMKRKTNPTKKKSRNLIRAVNPTTTQEKPE 467
Query: 165 -----EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKK 219
E N + +L + +K PVY +E G P ++ F + V Y G G +KK
Sbjct: 468 TEVVDEINSISRLIQIQQAKKEKEPVYTLKEERGGPRKKEFVIEVSVGEYSFNGTGPNKK 527
Query: 220 IAKREAALNMLKFLE-TVPIEIPEKKQ-----GEDVDEKGESNGLKHTHDSTFLTPQILK 273
+AKR AA +L+ + + P P ++ + G S G + L P +L
Sbjct: 528 LAKRNAAEGLLQEMGYSTPTTQPGYRKMNMYMNHEKQNVGGSGGRQ-------LVPGVLL 580
Query: 274 KIQQYHTVFSQKTKGPLLEKLLSTRNLIDEV------------------------EDPIL 309
+ + L +T L E +D ++
Sbjct: 581 MTDNTRSSSTGSNGNSGFSNLQTTAALAKEYINGGNQNQNEIRPNSGDGMTGVRPKDQLM 640
Query: 310 YLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRAL 369
YL L L + V + D + + ++ F SL+ L+T P V G+G + + + +A AL
Sbjct: 641 YLAKL---LGFTVQYSDFPKGNHSE-FLSLVSLSTEPPHVCHGSGKTTDQSHDQAALTAL 696
Query: 370 DFLQIMN 376
L M
Sbjct: 697 RALSKMG 703
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 20/144 (13%)
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL---------IGRDDEKLM------ 155
+R+S+ R + G G + + A+H+AA LD+L I + L
Sbjct: 282 FRVSVKVGDRTFE--GEGITAQAARHDAASKALDELRHLPVEENRINKGFSPLSECEDFG 339
Query: 156 -CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMF-TVCAYVNVYKEEG 213
C + + +P+ + E + R ++ + G PH R F T C + + G
Sbjct: 340 SCVESDSSSDLKSPISLVHELALKRNLSV-TFQVIDEKGPPHMRTFVTRCQVADSFVTTG 398
Query: 214 MGKSKKIAKREAALNMLKFLETVP 237
G KKI+K+ AA ML+ L T+P
Sbjct: 399 EGNGKKISKKRAAEKMLEELRTLP 422
>gi|444731362|gb|ELW71717.1| Double-stranded RNA-binding protein Staufen like protein 1 [Tupaia
chinensis]
Length = 632
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
+V G GKSKK +K NAA +VL++L + R ++ + + K++
Sbjct: 146 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPTVKLQASPEYGQA 205
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 206 MNPISRLAQIQQAKKDKEPEYVLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNA 265
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 266 AENMLEIL 273
Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 192 TGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
+G PH + F V + EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 129 SGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 174
>gi|332207751|ref|XP_003252959.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 1 [Nomascus leucogenys]
gi|332207757|ref|XP_003252962.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 4 [Nomascus leucogenys]
Length = 496
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 101 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 156
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMC--------QKENLFKVEPNPVGQLQEACMT 178
K NAA +VL++L + R ++ Q + NP+ +L +
Sbjct: 157 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPVVKPQTSPEYGQGINPISRLAQIQQA 216
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 217 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEIL 271
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 150
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 151 KSKKISKKNAAIAVLEELKKLP 172
>gi|82469824|gb|ABB77170.1| R2D2 [Drosophila melanogaster]
Length = 311
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 32/177 (18%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV---------AI 125
+++ VS +QE +R IN P + + + E YV A+
Sbjct: 3 NKSAVSALQEFCAR-------------TQINIPTYSF---IPGEDGGYVCKVELLEIEAL 46
Query: 126 GSGKSKKEAKHNAAKSVLD--QLIG-----RDDEKLMCQKENLFKVEPNPVGQLQEACMT 178
G+G+SK++AKH AA ++L QL+ D + E L + + V +L++ C+
Sbjct: 47 GNGRSKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDLGEELTNLNRDMVKELRDYCVR 106
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
R+ P P E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 107 REMPLPCIEIVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|55741782|ref|NP_001007150.1| double-stranded RNA-binding protein Staufen homolog 2 isoform LL
(A) [Rattus norvegicus]
gi|19526444|gb|AAL89718.1|AF483620_1 RNA-binding protein staufen splice form A [Rattus norvegicus]
Length = 571
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 261 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRRKFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|224078725|ref|XP_002188609.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Taeniopygia guttata]
Length = 697
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------- 166
++ G GKSKK +K NAA +VL++L + + ++ + +++ K++
Sbjct: 321 FMGEGEGKSKKISKKNAAIAVLEELKKLPPLPTVEKMKPRIKKKTKSIVKLQTSPEYGQG 380
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEEGMGKSKKIAKRE 224
NP+ +L + +K P Y GLP R F + V+ EGMG +KK+AKR
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVGESGVHTAEGMGTNKKVAKRN 440
Query: 225 AALNMLKFL 233
AA NML+ L
Sbjct: 441 AAENMLEIL 449
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 159 ENLFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYKEEG 213
ENL K E + Q+ E + R P P+ + + +G PH + F V + EG
Sbjct: 269 ENLNKSE---ISQVFEIALKRNLPVNFEFFPLKQVTKESGPPHMKSFVTKVSVGEFMGEG 325
Query: 214 MGKSKKIAKREAALNMLKFLETVP 237
GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 326 EGKSKKISKKNAAIAVLEELKKLP 349
>gi|159163844|pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar Rna-Binding
Protein 2
Length = 89
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 74
Query: 225 AALNML 230
AA ML
Sbjct: 75 AAAKML 80
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 78 PVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
PV +QEL+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK
Sbjct: 18 PVGALQELVVQKGWRLPEYTVTQESG----PAHRKEFTMTCRVERFIEIGSGTSKKLAKR 73
Query: 137 NAAKSVLDQLIG 148
NAA +L ++ G
Sbjct: 74 NAAAKMLLRVSG 85
>gi|291222217|ref|XP_002731114.1| PREDICTED: Double-stranded RNA-binding protein Staufen homolog
2-like [Saccoglossus kowalevskii]
Length = 668
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 139/343 (40%), Gaps = 55/343 (16%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+S E RR +E+I G + F R ++ Y A G KK +K A
Sbjct: 282 ISQCYESAHRRNLPISFEVINESGPPHMKTFITRCTIGE----YSAEAEGNGKKVSKKRA 337
Query: 139 AKSVLDQL----------------IGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWP 182
A VL+QL + + L+ Q + + NPV +L + +K
Sbjct: 338 AAKVLEQLKVLPALPVIEKPRPRFKKKKPKSLVQQSNQDYGLGMNPVSRLVQIQQAKKEK 397
Query: 183 PPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL-----ETVP 237
PV+ + G P +R F + + + G+G +KK+AKR AA ML+ L +P
Sbjct: 398 EPVFTLLQERGQPRKREFIMQVTIGSNQCTGIGPNKKMAKRAAAEAMLQLLGYRSTPPLP 457
Query: 238 IEIPEKKQGEDV--DEKGESNGLKHTHDSTFLTPQILKKIQQYH----TVFSQKTKGPLL 291
+ K +G + E+ +NG K T + L +L + H + S T +
Sbjct: 458 NKSALKTEGGETPSSEEKSTNGRKVTFADSKLG--VLNRAPGGHLGVDSCKSMATTATIA 515
Query: 292 EKLL------STRNLIDEVEDP------------ILYLEDLSDELKYRVSFVDIEEKSKA 333
++LL + LI P +++L ++ +V F D + +K
Sbjct: 516 KELLINGKSPTADALIKSGTGPKTEQKLLRPKQQLMFLAEIQG---LQVEFTDFPKGNKP 572
Query: 334 DGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMN 376
+ + SL+ + T P V G G +++ + A +AL L M+
Sbjct: 573 E-YLSLVSIATNPPLVAHGAGPTVDSSYDAAALQALKSLTDMD 614
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 87/212 (41%), Gaps = 28/212 (13%)
Query: 40 VLFDNNEIKQIPKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQ 99
VL++ N P V N L ++ + R P Q +R P Y
Sbjct: 152 VLYNGNPNSMTPTVELNGLAMKRGEPAIYRPIEANPRGP---QQGYYNR--PPPNYNF-- 204
Query: 100 IEGAINEPIFKYR--------ISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL----I 147
G N+ +YR +SLT +R + IG G+++++A+HNAA L L +
Sbjct: 205 -RGMYNQ---RYRYPMARPCYVSLTVGNREF--IGDGRTRQQARHNAALKALKVLRNEPL 258
Query: 148 GRDDEKLMCQKENLFKV--EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAY 205
+ KL + + + Q E+ R P +E +G PH + F
Sbjct: 259 PEEGVKLDVVDGDDNDDDESKSEISQCYESAHRRNL-PISFEVINESGPPHMKTFITRCT 317
Query: 206 VNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
+ Y E G KK++K+ AA +L+ L+ +P
Sbjct: 318 IGEYSAEAEGNGKKVSKKRAAAKVLEQLKVLP 349
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 34/217 (15%)
Query: 50 IPKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIF 109
+P +T + A + N ++TP+ L+ EL T P+Y+L G ++ F
Sbjct: 48 VPSSTTGTVTPPVAQTISQNMANPKEKTPMCLLNELARYNKTQPQYKLQDESGPAHQKTF 107
Query: 110 KYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPN-- 167
+SLT +++Y A SG S K+A+H AA+ L Q G K + L+ PN
Sbjct: 108 N--VSLTLNNQVYDA--SGSSIKKAQHAAAEIAL-QKCGLPRPKPRPPRV-LYNGNPNSM 161
Query: 168 -PVGQLQEACMTR---------------------KWPPPVYE----TEETTGLPHERMFT 201
P +L M R PPP Y + P R
Sbjct: 162 TPTVELNGLAMKRGEPAIYRPIEANPRGPQQGYYNRPPPNYNFRGMYNQRYRYPMARPCY 221
Query: 202 VCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
V V + G G++++ A+ AAL LK L P+
Sbjct: 222 VSLTVGNREFIGDGRTRQQARHNAALKALKVLRNEPL 258
>gi|345793129|ref|XP_003433715.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Canis lupus familiaris]
Length = 504
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 139/354 (39%), Gaps = 63/354 (17%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EKLLS-------------------TRNLIDEVEDPILYLEDL--------------SDEL 318
K ++ R L+ P L S +L
Sbjct: 337 PKDMNQPSSSFFSISPTSNSSATIARELLMNGTSPTAEAIGLKGSSPTPPCSPVQPSKQL 396
Query: 319 KY--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRAL 369
+Y R+ + + G + + LT PV + F G+SIE + +A AL
Sbjct: 397 EYLARIQGFQVHYCDRQSGKECVTCLTLAPVQMTFHAIGSSIEASHDQAALSAL 450
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|301782463|ref|XP_002926647.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Ailuropoda melanoleuca]
Length = 576
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 139/354 (39%), Gaps = 63/354 (17%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EKLLS-------------------TRNLIDEVEDPILYLEDL--------------SDEL 318
K ++ R L+ P L S +L
Sbjct: 409 PKDMNQPSSSFFSISPTSNSSATIARELLMNGTSPTAEAIGLKGSSPTPPCSPVQPSKQL 468
Query: 319 KY--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRAL 369
+Y R+ + + G + + LT PV + F G+SIE + +A AL
Sbjct: 469 EYLARIQGFQVHYCDRQSGKECVTCLTLAPVQMTFHAIGSSIEASHDQAALSAL 522
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|198473861|ref|XP_001356477.2| GA20129 [Drosophila pseudoobscura pseudoobscura]
gi|198138140|gb|EAL33541.2| GA20129 [Drosophila pseudoobscura pseudoobscura]
Length = 314
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 29/176 (16%)
Query: 76 RTPVSLMQELLSRRGT-APKYELIQIE--GAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
++ VS +QE ++ PKY+ I E G I + + + ES G+G+SK+
Sbjct: 4 KSAVSNLQEFCAKSKIPVPKYDYIDGEDGGYICKIVL-----MDIES-----YGNGRSKR 53
Query: 133 EAKHNAAKSVLDQL-------------IGRDDEKLMCQKENLFKVEPNPVGQLQEACMTR 179
++KH AA +++ +L IG + L + +NL + + + +L++ C+
Sbjct: 54 DSKHLAASNIMKKLRTLPGLSEHLSDDIGDNSSDLYDELKNLNR---DMLKELRDYCVRH 110
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
+ P P+ E + G P F C V K G KK A++ AA+ ML + T
Sbjct: 111 EMPLPLIEIVQQCGTPDAPEFLACCSVASIKRYGKSDKKKDARQRAAIEMLSVIST 166
>gi|432097000|gb|ELK27499.1| Double-stranded RNA-binding protein Staufen like protein 2 [Myotis
davidii]
Length = 635
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 27/243 (11%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK
Sbjct: 328 ANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKL 383
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTR 179
+K AA +VL +L ++ + + FK P NP+ +L + +
Sbjct: 384 SKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAK 443
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETV 236
K P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 444 KEKEPDYVLLSERGIPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKAST 503
Query: 237 PIEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPL 290
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 504 SLQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGNTLGYL 563
Query: 291 LEK 293
K
Sbjct: 564 SPK 566
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 282 FGEGKTRQAARHNAAMKALQALQNEPIPEKSSQNGESGKEMDDDKDANKSE---ISLVFE 338
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 339 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 397
Query: 235 TVP 237
+P
Sbjct: 398 KLP 400
>gi|47679381|gb|AAT36671.1| staufen2 spliceform SL [Rattus norvegicus]
gi|52001195|gb|AAU21478.1| double-stranded RNA binding protein staufen 2 59 kDa isoform
[Rattus norvegicus]
Length = 539
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 229 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|410987301|ref|XP_003999943.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Felis catus]
Length = 504
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 139/354 (39%), Gaps = 63/354 (17%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EKLLS-------------------TRNLIDEVEDPILYLEDL--------------SDEL 318
K ++ R L+ P L S +L
Sbjct: 337 PKDMNQPSSSFFSISPTSNSSATIARELLMNGTSPTAEAIGLKGSSPTPPCSPVQPSKQL 396
Query: 319 KY--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRAL 369
+Y R+ + + G + + LT PV + F G+SIE + +A AL
Sbjct: 397 EYLARIQGFQVHYCDRQSGKECVTCLTLAPVQMTFHAIGSSIEASHDQAALSAL 450
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|449662798|ref|XP_002167363.2| PREDICTED: maternal effect protein staufen-like [Hydra
magnipapillata]
Length = 493
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 23/207 (11%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NPV L + RK PP Y + G +F + A + +K G G SK+ AK A
Sbjct: 291 NPVTYLTQLIQLRKEPPVTYTMKAIPGDQSGALLFQIEAAITNFKSVGCGHSKREAKANA 350
Query: 226 ALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQK 285
A+N+LK L G D+DE E+ + H+ +++K + + + S+
Sbjct: 351 AMNLLKSL------------GIDLDEL-EAQKTRSLHED-----ELVKDMNEKFSTSSKA 392
Query: 286 TKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADG---FQSLLQL 342
+ + ++ L + LE ++ +++ F D K+K D F S L +
Sbjct: 393 VGSSISRSIDTSAKLEKNFDSAKQKLEYIAQLEGFQLMFNDF-VKNKKDNRGEFSSNLSI 451
Query: 343 TTTPVTVFCGTGASIEVAKIEAVYRAL 369
TTP V+ G+G S+E ++ A +AL
Sbjct: 452 FTTPPEVYQGSGDSVEASRENASSKAL 478
>gi|82469842|gb|ABB77179.1| R2D2 [Drosophila simulans]
Length = 311
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 25/197 (12%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS + E ++ T P Y I+ E + F ++ L A+G+G+SK++
Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYNFIKGE----DGGFVCKVELLE----LEALGNGRSKRD 54
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQK-------ENLFKVEPNPVGQLQEACMTRKWPPPVY 186
AKH AA +++ ++ + M Q E + + + + +L++ C+ P P
Sbjct: 55 AKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVRHDMPLPCI 114
Query: 187 ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET---------VP 237
E + +G P F C V G KK A++ AA+ ML + + V
Sbjct: 115 EVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISSNSHNLRPDQVQ 174
Query: 238 IEIPEKKQGEDVDEKGE 254
+ +K +G D++E E
Sbjct: 175 VASTKKFKGTDIEETME 191
>gi|195147336|ref|XP_002014636.1| GL19287 [Drosophila persimilis]
gi|194106589|gb|EDW28632.1| GL19287 [Drosophila persimilis]
Length = 314
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 29/176 (16%)
Query: 76 RTPVSLMQELLSRRGT-APKYELIQIE--GAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
++ VS +QE ++ PKY+ I E G I + + + ES G+G+SK+
Sbjct: 4 KSAVSNLQEFCAKSKIPVPKYDYIDGEDGGYICKIVL-----MDIES-----YGNGRSKR 53
Query: 133 EAKHNAAKSVLDQL-------------IGRDDEKLMCQKENLFKVEPNPVGQLQEACMTR 179
++KH AA +++ +L IG + L + +NL + + + +L++ C+
Sbjct: 54 DSKHLAASNIIKKLRRLPGLSEHLSDDIGDNSSDLYDELKNLNR---DMLKELRDYCVRH 110
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
+ P P+ E + G P F C V K G KK A++ AA+ ML + T
Sbjct: 111 EMPLPLIEIVQQCGTPDAPEFLACCSVASIKRYGKSDKKKDARQRAAIEMLSVIST 166
>gi|50949968|emb|CAH10527.1| hypothetical protein [Homo sapiens]
Length = 314
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 8 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 63
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 64 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 123
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 124 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 183
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 184 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISDTTLGYLS 243
Query: 292 EK 293
K
Sbjct: 244 PK 245
>gi|195385930|ref|XP_002051657.1| GJ11132 [Drosophila virilis]
gi|194148114|gb|EDW63812.1| GJ11132 [Drosophila virilis]
Length = 318
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 75 DRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE ++ T P YE I E + + ++ L A G+G+SK++
Sbjct: 3 NKSSVSALQECCAQAKTGNPVYEYIDGE----DGGYVCKVVLID----IEAYGNGRSKRD 54
Query: 134 AKHNAAKSVLDQLI---------------GRDDEKLMCQKENLFKVEPNPVGQLQEACMT 178
AKH AA +++ ++ G+D+ L + L + + + +L++ C+
Sbjct: 55 AKHLAAGNLMRKMRRLPGFTNLDADGDGEGQDNFNLNSVADELTNMNRDMLKELRDYCVR 114
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
P P+ E + +G P+ F C V K G KK A++ AA+ ML
Sbjct: 115 HDMPLPIIEIVQQSGSPNAPEFVACCSVASIKRYGKSDKKKDARQRAAIEML 166
>gi|149060896|gb|EDM11506.1| rCG30397, isoform CRA_b [Rattus norvegicus]
gi|149060897|gb|EDM11507.1| rCG30397, isoform CRA_b [Rattus norvegicus]
gi|149060898|gb|EDM11508.1| rCG30397, isoform CRA_b [Rattus norvegicus]
gi|149060899|gb|EDM11509.1| rCG30397, isoform CRA_b [Rattus norvegicus]
Length = 467
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 157 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 336
Query: 292 EK 293
K
Sbjct: 337 PK 338
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|349732119|ref|NP_001231836.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 2
[Xenopus (Silurana) tropicalis]
Length = 690
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL----------IGRDDEKLMCQKENLFKVEP----- 166
++ G GKSKK +K NAA SVL++L + K + P
Sbjct: 314 FLGEGEGKSKKISKKNAAISVLEELRKLPPLPTVEKMKPKIKKKTKSIVKLPTSPEYGQG 373
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EGMG +KK+AKR A
Sbjct: 374 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHSAEGMGTNKKVAKRNA 433
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 434 AENMLELL 441
>gi|73919460|sp|Q68SB1.1|STAU2_RAT RecName: Full=Double-stranded RNA-binding protein Staufen homolog
2; Short=r-staufen protein
gi|47679385|gb|AAT36673.1| staufen2 spliceform LL [Rattus norvegicus]
Length = 571
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 261 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|19526446|gb|AAL89719.1|AF483621_1 RNA-binding protein staufen splice form B [Rattus norvegicus]
Length = 512
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 261 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRRKFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|349732117|ref|NP_001016542.2| double-stranded RNA-binding protein Staufen homolog 1 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 696
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL----------IGRDDEKLMCQKENLFKVEP----- 166
++ G GKSKK +K NAA SVL++L + K + P
Sbjct: 320 FLGEGEGKSKKISKKNAAISVLEELRKLPPLPTVEKMKPKIKKKTKSIVKLPTSPEYGQG 379
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EGMG +KK+AKR A
Sbjct: 380 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHSAEGMGTNKKVAKRNA 439
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 440 AENMLELL 447
>gi|443692836|gb|ELT94341.1| hypothetical protein CAPTEDRAFT_152167 [Capitella teleta]
Length = 720
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+SL+ E+ RR +E+++ G + F R + S + G G SKK +K
Sbjct: 308 ISLVHEIALRRSLTVNFEVVKESGPPHMRTFVTRCTCGS----FSVDGVGNSKKLSKKRC 363
Query: 139 AKSVLDQL--------IGRDDEKLMCQKE---NLFK-------VEPNPVGQLQEACMTRK 180
A+ +L++L + K+ K+ NL K V NP+ +L + +K
Sbjct: 364 AEKMLEELRSLPALPPLASKVRKMPVNKKKNRNLIKKACVDYGVGINPISRLIQIQQAKK 423
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
PVY GLP R F + V G+G +KK+AKR AA ML+ L
Sbjct: 424 EKEPVYSLVAERGLPRRREFVIQVAVGEQSCTGVGPNKKLAKRTAAEQMLQLL 476
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 44/223 (19%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
NT ++TP+ L+ EL +Y L +G ++ F ++ L E Y A SG S
Sbjct: 92 NTKEKTPMCLINELARFNKIQHQYTLTDEQGPAHKKTFYVKLKLGDEK--YAA--SGPSI 147
Query: 132 KEAKHNAAKSVLDQ--------LIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRK--- 180
K+A+H AAK L Q + ++C ++ P +L M R
Sbjct: 148 KKAQHAAAKEALAQSAFKHPPPKPAPANGLVVCSNPSI-----TPTVELNALAMKRGEPA 202
Query: 181 -----------WPPP------VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
+PPP +Y R+F V V + G G +++ A+
Sbjct: 203 VYRPIEPNRPYFPPPNLDFRGMYNQRYHYPKYPPRVFYVSLKVGHREFIGEGSTRQAARH 262
Query: 224 EAALNMLKFLETVPI--EIPEKK-----QGEDVDEKGESNGLK 259
AA L+ L+ +P+ E P KK +D E E + LK
Sbjct: 263 SAAEKALRVLKCLPMPGEAPLKKGLDSSSDDDTPEDNEDDALK 305
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL----------------IGRDDEKL 154
+ +SL R + IG G +++ A+H+AA+ L L DD+
Sbjct: 239 FYVSLKVGHREF--IGEGSTRQAARHSAAEKALRVLKCLPMPGEAPLKKGLDSSSDDDTP 296
Query: 155 MCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGM 214
+++ K E + + E + R +E + +G PH R F + +G+
Sbjct: 297 EDNEDDALKSE---ISLVHEIALRRSLTV-NFEVVKESGPPHMRTFVTRCTCGSFSVDGV 352
Query: 215 GKSKKIAKREAALNMLKFLETVPIEIP 241
G SKK++K+ A ML+ L ++P P
Sbjct: 353 GNSKKLSKKRCAEKMLEELRSLPALPP 379
>gi|326917772|ref|XP_003205170.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like, partial [Meleagris gallopavo]
Length = 479
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 21/207 (10%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S++ E+ +R +E+I+ G + F R+++ + A G G SKK +
Sbjct: 277 NKSEISVVFEIALKRNIPVSFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSKKLS 332
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA SVL +L ++ + + FK P NP+ +L + +K
Sbjct: 333 KKRAAMSVLQELKKLPPLPVIEKPKLYFKKRPKTILKTGPEYGQGMNPISRLAQIQQAKK 392
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAKR AA M L + + P
Sbjct: 393 EKEPEYVLLSERGMPRRREFVMQVKVGNEITTGTGPNKKIAKRNAAEAMLLQLGYKASTP 452
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDS 264
++ +K GE+ G++ G S
Sbjct: 453 LQDQTEKLGENKSWNGQNVGFPEPTSS 479
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQKENLFKVEPNP------VGQLQEACM 177
G GK+++ A+HNAA L L EKL E + E + + + E +
Sbjct: 230 FGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKETEEDKDANKSEISVVFEIAL 289
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
R P +E + +G PH + F V + EG G SKK++K+ AA+++L+ L+ +P
Sbjct: 290 KRNIPV-SFEVIKESGPPHMKSFVTRVTVGEFTAEGEGNSKKLSKKRAAMSVLQELKKLP 348
>gi|449494262|ref|XP_004175290.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Taeniopygia guttata]
Length = 532
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 26/224 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S++ E+ +R +E+I+ G + F R+++ + A G G SKK +
Sbjct: 167 NKSEISVVFEIALKRNIPVTFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSKKLS 222
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 223 KKRAAMAVLQELKKLPPLPVIEKPKLYFKKRPKTILKTGPEYGQGMNPISRLAQIQQAKK 282
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAKR AA M L + + P
Sbjct: 283 EKEPEYVLLSERGMPRRREFVMQVKVGNDTTTGTGPNKKIAKRNAAEAMLLQLGYKASTP 342
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ 276
++ +K GE+ G++ G +T L+P + ++++
Sbjct: 343 LQDQTEKLGENKSWNGQNVGFPEPTSNTPKGILHLSPDVYQEME 386
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQKENLFKVEPNPVGQLQEACMT----- 178
G GK+++ A+HNAA L L EKL E + E + E +
Sbjct: 120 FGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKESEEDKDANKSEISVVFEIAL 179
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
++ P +E + +G PH + F V + EG G SKK++K+ AA+ +L+ L+ +P
Sbjct: 180 KRNIPVTFEVIKESGPPHMKSFVTRVTVGEFTAEGEGNSKKLSKKRAAMAVLQELKKLP 238
>gi|82469820|gb|ABB77168.1| R2D2 [Drosophila teissieri]
Length = 321
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 19/172 (11%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE ++ + P YE I E + + ++ L A G+G+SK++
Sbjct: 10 NKSAVSALQEFCAKTKNIPPSYEYIDGE----DGGYVCKVDLMEVE----AYGNGRSKRD 61
Query: 134 AKHNAAKSVL---------DQLI-GRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPP 183
AKH AA ++L DQ++ + K+ E L + + + +L++ C+ + P
Sbjct: 62 AKHLAAVNILRKIRKLPGVDQILQDWETNKVGDPGEELVNLNRDMLKELRDYCVRHEMPL 121
Query: 184 PVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
P E + +G P+ F C V G KK A++ AA+ ML + +
Sbjct: 122 PTIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 173
>gi|114107707|gb|AAI22893.1| stau1 protein [Xenopus (Silurana) tropicalis]
Length = 686
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL----------IGRDDEKLMCQKENLFKVEP----- 166
++ G GKSKK +K NAA SVL++L + K + P
Sbjct: 310 FLGEGEGKSKKISKKNAAISVLEELRKLPPLPTVEKMKPKIKKKTKSIVKLPTSPEYGQG 369
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EGMG +KK+AKR A
Sbjct: 370 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHSAEGMGTNKKVAKRNA 429
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 430 AENMLELL 437
>gi|82469826|gb|ABB77171.1| R2D2 [Drosophila melanogaster]
Length = 311
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 32/177 (18%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV---------AI 125
+++ VS +QE +R IN P + + + E YV A+
Sbjct: 3 NKSAVSALQEFCART-------------QINLPTYSF---IPGEDGGYVCKVELLEIEAL 46
Query: 126 GSGKSKKEAKHNAAKSVLD--QLIG-----RDDEKLMCQKENLFKVEPNPVGQLQEACMT 178
G+G+SK++AKH AA ++L QL+ D + E L + + V +L++ C+
Sbjct: 47 GNGRSKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDLGEELTNLNRDMVKELRDYCVR 106
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
R+ P P E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 107 REMPLPSIEIVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|89271756|emb|CAJ83112.1| novel protein similar to staufen [Xenopus (Silurana) tropicalis]
Length = 696
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL----------IGRDDEKLMCQKENLFKVEP----- 166
++ G GKSKK +K NAA SVL++L + K + P
Sbjct: 320 FLGEGEGKSKKISKKNAAISVLEELRKLPPLPTVEKMKPKIKKKTKSIVKLPTSPEYGQG 379
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EGMG +KK+AKR A
Sbjct: 380 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHSAEGMGTNKKVAKRNA 439
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 440 AENMLELL 447
>gi|55741784|ref|NP_001007151.1| double-stranded RNA-binding protein Staufen homolog 2 isoform SS
[Rattus norvegicus]
gi|47679379|gb|AAT36670.1| staufen2 spliceform SS [Rattus norvegicus]
gi|52001197|gb|AAU21479.1| double-stranded RNA binding protein staufen 2 52 kDa isoform
[Rattus norvegicus]
Length = 480
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 229 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|82469828|gb|ABB77172.1| R2D2 [Drosophila melanogaster]
gi|82469832|gb|ABB77174.1| R2D2 [Drosophila melanogaster]
Length = 311
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 32/177 (18%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV---------AI 125
+++ VS +QE +R IN P + + + E YV A+
Sbjct: 3 NKSAVSALQEFCAR-------------TQINLPTYSF---IPGEDGGYVCKVELLEIEAL 46
Query: 126 GSGKSKKEAKHNAAKSVLD--QLIG-----RDDEKLMCQKENLFKVEPNPVGQLQEACMT 178
G+G+SK++AKH AA ++L QL+ D + + L + + V +L++ C+
Sbjct: 47 GNGRSKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDVGDELTNLNRDMVKELRDYCVR 106
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
R+ P P E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 107 REMPLPCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|395855269|ref|XP_003800089.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Otolemur garnettii]
Length = 428
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 64 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 119
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 120 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 179
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 180 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 239
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 240 LQDQLEKTGENKGWSGPKAGFPEPPNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 299
Query: 292 EK 293
K
Sbjct: 300 PK 301
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 17 FGEGKTRQAARHNAAMKALQALQNEPIPEKSHQNGESGKEMDDDKDANKSE---ISLVFE 73
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 74 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 132
Query: 235 TVP 237
+P
Sbjct: 133 KLP 135
>gi|51592098|ref|NP_604461.2| double-stranded RNA-binding protein Staufen homolog 2 isoform LS
(B) [Rattus norvegicus]
gi|47679383|gb|AAT36672.1| staufen2 spliceform LS [Rattus norvegicus]
gi|55715910|gb|AAH85705.1| Stau2 protein [Rattus norvegicus]
Length = 512
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 261 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|441638303|ref|XP_004090133.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Nomascus leucogenys]
Length = 502
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMC--------QKENLFKVE 165
+V G GKSKK +K NAA +VL++L + R ++ Q +
Sbjct: 150 FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPVVKPQTSPEYGQG 209
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP+ +L + +K P Y GLP R F + V + EG G +KK+AKR A
Sbjct: 210 INPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNA 269
Query: 226 ALNMLKFL 233
A NML+ L
Sbjct: 270 AENMLEIL 277
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPPPERLEVNGRESE--- 96
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYK 210
+ENL K E + Q+ E + R P P+ + +G PH + F V +
Sbjct: 97 --EENLNKSE---ISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFV 151
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVP 237
EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 152 GEGEGKSKKISKKNAAIAVLEELKKLP 178
>gi|149060895|gb|EDM11505.1| rCG30397, isoform CRA_a [Rattus norvegicus]
Length = 408
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 157 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 336
Query: 292 EK 293
K
Sbjct: 337 PK 338
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|348588699|ref|XP_003480102.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like isoform 2 [Cavia porcellus]
Length = 504
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 139/354 (39%), Gaps = 63/354 (17%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLDKTGENKGWSGPKTGYPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EKLLS-------------------TRNLIDEVEDPILYLEDL--------------SDEL 318
K ++ R L+ P L S +L
Sbjct: 337 PKDMNQPSSSFFSISPTSNSSATIARELLMNGTSPTAEAIGLKGSSPTPPCSPVQPSKQL 396
Query: 319 KY--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRAL 369
+Y R+ + + G + + LT PV + F G+SIE + +A AL
Sbjct: 397 EYLARIQGFQVHYCDRQSGKEYVTCLTLAPVQMTFHAIGSSIEASHDQAALSAL 450
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|195339009|ref|XP_002036114.1| r2d2 [Drosophila sechellia]
gi|194129994|gb|EDW52037.1| r2d2 [Drosophila sechellia]
Length = 311
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 25/197 (12%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS + E ++ + T P Y I E + F ++ L A+G+G+SK++
Sbjct: 3 NKSAVSALHEFCAKTKNTPPTYNFINGE----DGGFVCKVELLE----IEALGNGRSKRD 54
Query: 134 AKHNAAKSVLDQL-------IGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVY 186
AKH AA +++ ++ R D L E + + + + +L++ C+ P P
Sbjct: 55 AKHLAAANIMRKIQILPGMQSMRMDLSLGDLGEEITNLNRDMLKELRDYCVRHDMPLPCI 114
Query: 187 ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET---------VP 237
E + +G P F C V G KK A++ AA+ ML + + +
Sbjct: 115 EVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISSNSHNLRPDQLQ 174
Query: 238 IEIPEKKQGEDVDEKGE 254
+ +K +G D++E E
Sbjct: 175 VASTKKFKGADIEETME 191
>gi|207080126|ref|NP_001128815.1| DKFZP469K0112 protein [Pongo abelii]
gi|55729500|emb|CAH91481.1| hypothetical protein [Pongo abelii]
Length = 479
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTVVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|194862942|ref|XP_001970198.1| GG10497 [Drosophila erecta]
gi|190662065|gb|EDV59257.1| GG10497 [Drosophila erecta]
Length = 322
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE ++ + P Y I E + + ++ L +A G+G+SK++
Sbjct: 10 NKSAVSALQEFCAKTKNIPPTYNFIDGE----DGGYVCKVDLME----LMAYGNGRSKRD 61
Query: 134 AKHNAAKSVLDQL---------IGRDDEKLMCQK--ENLFKVEPNPVGQLQEACMTRKWP 182
AKH AA ++L ++ I +D E + E L + + + L++ C+ + P
Sbjct: 62 AKHLAAVNILRKIRKLPGMGNIISQDCETMTMGDPDEALININRDMLKALRDYCVRHEMP 121
Query: 183 PPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-------- 234
P E + +G P+ F C V G KK A++ AA+ ML +
Sbjct: 122 LPSIEVVQQSGSPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLAVISKEADNLRP 181
Query: 235 -TVPIEIPEKKQGEDVDEKGE 254
+ + +K +G D+DE E
Sbjct: 182 GQMEVVSTKKSEGLDLDETLE 202
>gi|427782479|gb|JAA56691.1| Putative staufen rna binding protein log 2 [Rhipicephalus
pulchellus]
Length = 652
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 35/189 (18%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PVSL+ EL +RG + ++++Q G + F+ R ++ S A G G KK +K
Sbjct: 246 KSPVSLVHELALKRGLSVVFQVVQESGPPHMRTFRTRCTVGDIS----AEGEGNGKKASK 301
Query: 136 HNAAKSVLDQL----------------IGRDDEKLMCQK-------ENLFK--------V 164
AA+ VL+QL +G +L ++ NL +
Sbjct: 302 KEAAQGVLEQLRKLPPIEPPPGSAVTSVGPGGAQLQKRRAPPKKRARNLVRDQQAATPPC 361
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NP+ +L + +K P Y G P +R F + + +G+G +KK AKR
Sbjct: 362 EVNPISRLIQIQQAKKEMEPTYVLVSERGDPRQREFVLQCKLGNLTAQGVGPNKKTAKRL 421
Query: 225 AALNMLKFL 233
AA ML+ L
Sbjct: 422 AAEAMLQRL 430
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV-PIEIPEK 243
V++ + +G PH R F V EG G KK +K+EAA +L+ L + PIE P
Sbjct: 264 VFQVVQESGPPHMRTFRTRCTVGDISAEGEGNGKKASKKEAAQGVLEQLRKLPPIEPPPG 323
Query: 244 KQGEDVDEKG 253
V G
Sbjct: 324 SAVTSVGPGG 333
>gi|397522629|ref|XP_003831362.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Pan paniscus]
gi|426359912|ref|XP_004047200.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Gorilla gorilla gorilla]
gi|6634457|emb|CAB64341.1| 39k3 protein [Homo sapiens]
gi|83404956|gb|AAI10448.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Homo sapiens]
gi|119607412|gb|EAW87006.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_d
[Homo sapiens]
gi|189054410|dbj|BAG37183.1| unnamed protein product [Homo sapiens]
Length = 479
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|291388129|ref|XP_002710683.1| PREDICTED: staufen homolog 2 isoform 1 [Oryctolagus cuniculus]
Length = 570
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPANNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 26/129 (20%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQL--------------IGR--DDEKLMCQKENLFKVEPNP 168
G GK+++ A+HNAA L L G+ DD+K + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEVDDDKDANKSE--------- 208
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
+ + E + R P +E + +G PH + F V + EG G SKK++K+ AA
Sbjct: 209 ISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATT 267
Query: 229 MLKFLETVP 237
+L+ L+ +P
Sbjct: 268 VLQELKKLP 276
>gi|256418993|ref|NP_055208.2| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Homo sapiens]
gi|256419003|ref|NP_001157856.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Homo sapiens]
gi|168270864|dbj|BAG10225.1| double-stranded RNA-binding protein Staufen homolog 2 [synthetic
construct]
Length = 479
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------------DDEKLMCQKENLFKVEPNP 168
G GK+++ A+HNAA L L DD+K + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSE--------- 176
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
+ + E + R P +E + +G PH + F V + EG G SKK++K+ AA
Sbjct: 177 ISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATT 235
Query: 229 MLKFLETVP 237
+L+ L+ +P
Sbjct: 236 VLQELKKLP 244
>gi|380783239|gb|AFE63495.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Macaca mulatta]
gi|383408739|gb|AFH27583.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Macaca mulatta]
gi|384946454|gb|AFI36832.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Macaca mulatta]
Length = 479
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|114620506|ref|XP_001165637.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 8 [Pan troglodytes]
gi|410260222|gb|JAA18077.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
gi|410298476|gb|JAA27838.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
gi|410349501|gb|JAA41354.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 479
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|431891847|gb|ELK02381.1| Double-stranded RNA-binding protein Staufen like protein 2
[Pteropus alecto]
Length = 510
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELRKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 DKEPDYVLLSERGMPRRREFVMQVKVGSEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPLPEKSPQNGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELR 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 28/208 (13%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L++ G + +F ++SL ++ + A GS K
Sbjct: 3 NPREKTPMCLVNELARFSRVQPQYKLLKERGPAHSKMFSVQLSLGEQT--WEAEGS-SIK 59
Query: 132 KEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPP-------- 183
K + A+K++ + + R +K N P +L M R P
Sbjct: 60 KAQQAVASKALTESTLPRPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPK 119
Query: 184 --PVYET--------EETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
P Y + P ++F V V + G GK+++ A+ AA+ L+ L
Sbjct: 120 PFPSYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQAL 179
Query: 234 ETVPIEIPEK-----KQGEDVDEKGESN 256
+ P +PEK + G+D+D+ ++N
Sbjct: 180 QNEP--LPEKSPQNGESGKDMDDDKDAN 205
>gi|380783241|gb|AFE63496.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
[Macaca mulatta]
gi|383408741|gb|AFH27584.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
[Macaca mulatta]
Length = 570
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|114620488|ref|XP_001165116.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Pan troglodytes]
gi|410260220|gb|JAA18076.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 570
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|410210862|gb|JAA02650.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 479
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|397522635|ref|XP_003831365.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Pan paniscus]
gi|73919458|sp|Q9NUL3.1|STAU2_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
gi|23507039|gb|AAN37926.1|AF459097_1 double-stranded RNA-binding protein Staufen2 long isoform [Homo
sapiens]
gi|7023858|dbj|BAA92111.1| unnamed protein product [Homo sapiens]
gi|119607410|gb|EAW87004.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b
[Homo sapiens]
gi|119607413|gb|EAW87007.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b
[Homo sapiens]
Length = 570
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|410987299|ref|XP_003999942.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Felis catus]
Length = 479
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|256418995|ref|NP_001157852.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
[Homo sapiens]
Length = 570
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------------DDEKLMCQKENLFKVEPNP 168
G GK+++ A+HNAA L L DD+K + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSE--------- 208
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
+ + E + R P +E + +G PH + F V + EG G SKK++K+ AA
Sbjct: 209 ISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATT 267
Query: 229 MLKFLETVP 237
+L+ L+ +P
Sbjct: 268 VLQELKKLP 276
>gi|297299584|ref|XP_001084686.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Macaca mulatta]
Length = 570
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|380811744|gb|AFE77747.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
[Macaca mulatta]
Length = 608
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|345793127|ref|XP_860148.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Canis lupus familiaris]
Length = 538
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|256418997|ref|NP_001157853.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b
[Homo sapiens]
Length = 538
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 26/129 (20%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQL--------------IGRD--DEKLMCQKENLFKVEPNP 168
G GK+++ A+HNAA L L G+D D+K + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSE--------- 176
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
+ + E + R P +E + +G PH + F V + EG G SKK++K+ AA
Sbjct: 177 ISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATT 235
Query: 229 MLKFLETVP 237
+L+ L+ +P
Sbjct: 236 VLQELKKLP 244
>gi|157074142|ref|NP_001096783.1| double-stranded RNA-binding protein Staufen homolog 2 [Bos taurus]
gi|426235644|ref|XP_004011790.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Ovis aries]
gi|151554636|gb|AAI49988.1| STAU2 protein [Bos taurus]
Length = 538
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|119607409|gb|EAW87003.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_a
[Homo sapiens]
Length = 549
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|221040030|dbj|BAH11778.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 167 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 222
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 223 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 282
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 283 EKEPDYVLLSERGMPRRREFVMQVTVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 342
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 343 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 402
Query: 292 EK 293
K
Sbjct: 403 PK 404
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 120 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 176
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 177 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 235
Query: 235 TVP 237
+P
Sbjct: 236 KLP 238
>gi|426359916|ref|XP_004047202.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Gorilla gorilla gorilla]
Length = 570
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|410210864|gb|JAA02651.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 538
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|397522631|ref|XP_003831363.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Pan paniscus]
gi|23507041|gb|AAN37927.1|AF459098_1 double-stranded RNA-binding protein Staufen2 short isoform [Homo
sapiens]
gi|14249967|gb|AAH08369.1| STAU2 protein [Homo sapiens]
gi|119607411|gb|EAW87005.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_c
[Homo sapiens]
gi|123999574|gb|ABM87331.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic
construct]
gi|157929178|gb|ABW03874.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic
construct]
Length = 538
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|82469856|gb|ABB77186.1| R2D2 [Drosophila yakuba]
gi|82469866|gb|ABB77191.1| R2D2 [Drosophila yakuba]
Length = 321
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE ++ + T P YE I E + + ++ + A G+G+SK++
Sbjct: 10 NKSAVSALQEFCAKTKNTPPLYEFIDGE----DGGYVCKVDMMEVE----AYGNGRSKRD 61
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVG---------------QLQEACMT 178
AKH AA ++L ++ KL + L E N +G +L++ C+
Sbjct: 62 AKHLAAVNILRKI-----RKLPGVENXLQDSESNTMGDPGQEVINLNRDMLRELRDYCVR 116
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
+ P P E + +G P+ F C V G KK A++ AA+ ML + +
Sbjct: 117 HEMPLPTIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 173
>gi|256418999|ref|NP_001157854.1| double-stranded RNA-binding protein Staufen homolog 2 isoform c
[Homo sapiens]
Length = 504
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EK 293
K
Sbjct: 337 PK 338
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------------DDEKLMCQKENLFKVEPNP 168
G GK+++ A+HNAA L L DD+K + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSE--------- 104
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
+ + E + R P +E + +G PH + F V + EG G SKK++K+ AA
Sbjct: 105 ISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATT 163
Query: 229 MLKFLETVP 237
+L+ L+ +P
Sbjct: 164 VLQELKKLP 172
>gi|426359920|ref|XP_004047204.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 5 [Gorilla gorilla gorilla]
Length = 398
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 33 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 88
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 89 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 148
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 149 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 208
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 209 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 268
Query: 292 EK 293
K
Sbjct: 269 PK 270
>gi|384946452|gb|AFI36831.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b
[Macaca mulatta]
gi|387541624|gb|AFJ71439.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b
[Macaca mulatta]
Length = 538
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|114620490|ref|XP_519808.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 12 [Pan troglodytes]
gi|410298478|gb|JAA27839.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
gi|410349503|gb|JAA41355.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 538
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|426359914|ref|XP_004047201.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Gorilla gorilla gorilla]
Length = 538
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|68533083|dbj|BAE06096.1| STAU2 variant protein [Homo sapiens]
Length = 490
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 184 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 239
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 240 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 299
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 300 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 359
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 360 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 419
Query: 292 EK 293
K
Sbjct: 420 PK 421
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------------DDEKLMCQKENLFKVEPNP 168
G GK+++ A+HNAA L L DD+K + E
Sbjct: 137 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSE--------- 187
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
+ + E + R P +E + +G PH + F V + EG G SKK++K+ AA
Sbjct: 188 ISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATT 246
Query: 229 MLKFLETVP 237
+L+ L+ +P
Sbjct: 247 VLQELKKLP 255
>gi|197101215|ref|NP_001124896.1| double-stranded RNA-binding protein Staufen homolog 2 [Pongo
abelii]
gi|55726277|emb|CAH89910.1| hypothetical protein [Pongo abelii]
Length = 491
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 185 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 240
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 241 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTVVKAGPEYGQGMNPISRLAQIQQAKK 300
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 301 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 360
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 361 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 420
Query: 292 EK 293
K
Sbjct: 421 PK 422
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 138 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 194
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 195 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 253
Query: 235 TVP 237
+P
Sbjct: 254 KLP 256
>gi|296226702|ref|XP_002759044.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Callithrix jacchus]
Length = 570
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|403304160|ref|XP_003942677.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Saimiri boliviensis boliviensis]
Length = 479
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|296226704|ref|XP_002759045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Callithrix jacchus]
Length = 538
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|256419001|ref|NP_001157855.1| double-stranded RNA-binding protein Staufen homolog 2 isoform d
[Homo sapiens]
Length = 398
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 33 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 88
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 89 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 148
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 149 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 208
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 209 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 268
Query: 292 EK 293
K
Sbjct: 269 PK 270
>gi|332826413|ref|XP_003311807.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Pan troglodytes]
gi|397522637|ref|XP_003831366.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 5 [Pan paniscus]
gi|221044446|dbj|BAH13900.1| unnamed protein product [Homo sapiens]
Length = 504
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EK 293
K
Sbjct: 337 PK 338
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|402878493|ref|XP_003902917.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Papio anubis]
gi|221039518|dbj|BAH11522.1| unnamed protein product [Homo sapiens]
Length = 398
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 33 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 88
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 89 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 148
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 149 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 208
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 209 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 268
Query: 292 EK 293
K
Sbjct: 269 PK 270
>gi|426235642|ref|XP_004011789.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Ovis aries]
Length = 570
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|345793125|ref|XP_003433714.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Canis lupus familiaris]
Length = 570
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|426359918|ref|XP_004047203.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Gorilla gorilla gorilla]
Length = 504
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EK 293
K
Sbjct: 337 PK 338
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|355698029|gb|EHH28577.1| Double-stranded RNA-binding protein Staufen-like protein 2, partial
[Macaca mulatta]
Length = 534
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 169 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 224
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 225 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 284
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 285 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 344
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 345 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 404
Query: 292 EK 293
K
Sbjct: 405 PK 406
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
+G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 122 LGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSE---ISLVFE 178
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 179 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 237
Query: 235 TVP 237
+P
Sbjct: 238 KLP 240
>gi|256419005|ref|NP_001157857.1| double-stranded RNA-binding protein Staufen homolog 2 isoform f
[Homo sapiens]
Length = 473
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 167 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 222
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 223 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 282
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 283 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 342
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 343 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 402
Query: 292 EK 293
K
Sbjct: 403 PK 404
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 26/129 (20%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQL--------------IGRD--DEKLMCQKENLFKVEPNP 168
G GK+++ A+HNAA L L G+D D+K + E
Sbjct: 120 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSE--------- 170
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
+ + E + R P +E + +G PH + F V + EG G SKK++K+ AA
Sbjct: 171 ISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATT 229
Query: 229 MLKFLETVP 237
+L+ L+ +P
Sbjct: 230 VLQELKKLP 238
>gi|312067398|ref|XP_003136724.1| double-stranded RNA binding domain-containing protein family
protein [Loa loa]
gi|307768110|gb|EFO27344.1| double-stranded RNA binding domain-containing protein family
protein [Loa loa]
Length = 445
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLI----------GRDDEKLMCQKENL---FK-------- 163
IG G++KK AK AAK++L ++I G+ E+ + ENL F+
Sbjct: 130 IGHGRTKKIAKQMAAKNMLKKMIEKESFSDFELGKTKEEALASLENLTIDFQNRGSGDDS 189
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
V N VG++ E C K YE +E G P+ R+F + G GK+KKIAK
Sbjct: 190 VAENWVGKVNERCQKLKLSSVNYEIDEE-GPPNHRIFIATCKMGKVHVVGHGKTKKIAKT 248
Query: 224 EAALNMLKFLE 234
AA M LE
Sbjct: 249 LAAQKMYAQLE 259
>gi|344273169|ref|XP_003408396.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Loxodonta africana]
Length = 570
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|194765667|ref|XP_001964948.1| GF21798 [Drosophila ananassae]
gi|190617558|gb|EDV33082.1| GF21798 [Drosophila ananassae]
Length = 316
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 22/175 (12%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE ++ + P YE I E + + +++L A G+G+SK++
Sbjct: 3 NKSAVSSLQEFCAKTKNCPPTYEFIDGE----DGGYVCKVTLLEID----AYGNGRSKRD 54
Query: 134 AKHNAAKSVL----------DQLIGRDDE---KLMCQKENLFKVEPNPVGQLQEACMTRK 180
AKH AA +++ D L DDE L + L + + +L++ C+ +
Sbjct: 55 AKHLAASNIMRKVRVLPGASDLLKDMDDEDQSNLNHLVDELTNTNRDMLKELRDFCVRHE 114
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
P P E + G P+ F C V G KK A++ AA+ ML + +
Sbjct: 115 MPLPTIEIVQQCGTPNAPEFVACCKVASLTRYGKSDKKKDARQRAAIEMLAVISS 169
>gi|344273171|ref|XP_003408397.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Loxodonta africana]
Length = 504
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EK 293
K
Sbjct: 337 PK 338
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|158261305|dbj|BAF82830.1| unnamed protein product [Homo sapiens]
Length = 479
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAGAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + + ++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQGMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|348588697|ref|XP_003480101.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like isoform 1 [Cavia porcellus]
Length = 570
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKTGYPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|332826415|ref|XP_003311808.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Pan troglodytes]
Length = 474
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 109 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 164
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 165 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 224
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 225 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 284
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 285 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 344
Query: 292 EK 293
K
Sbjct: 345 PK 346
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 62 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 118
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 119 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 177
Query: 235 TVP 237
+P
Sbjct: 178 KLP 180
>gi|296226706|ref|XP_002759046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Callithrix jacchus]
Length = 504
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EK 293
K
Sbjct: 337 PK 338
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|403304162|ref|XP_003942678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Saimiri boliviensis boliviensis]
Length = 570
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|384946456|gb|AFI36833.1| double-stranded RNA-binding protein Staufen homolog 2 isoform f
[Macaca mulatta]
Length = 473
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 167 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 222
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 223 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 282
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 283 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 342
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 343 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 402
Query: 292 EK 293
K
Sbjct: 403 PK 404
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 120 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSE---ISLVFE 176
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 177 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 235
Query: 235 TVP 237
+P
Sbjct: 236 KLP 238
>gi|281337840|gb|EFB13424.1| hypothetical protein PANDA_016331 [Ailuropoda melanoleuca]
Length = 510
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|432930058|ref|XP_004081299.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
Staufen homolog 2-like [Oryzias latipes]
Length = 728
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 18/180 (10%)
Query: 65 RLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
+LE ++ +SL+ E+ +R + +E+++ G + F R+++ + A
Sbjct: 267 KLEAEEGTDASKSEISLVYEIALKRNLSVNFEVLKESGPPHMKSFLTRVTVGE----FSA 322
Query: 125 IGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVG 170
G G SKK +K AA S+L +L + + + + + K P NP+
Sbjct: 323 EGEGNSKKLSKKRAALSILQELKKLPFIPTVEKPKTHYKKRTKTILKTGPDYGQGMNPIS 382
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
+L + +K P Y+ G+P R F + VN G G +KK+AKR AA ML
Sbjct: 383 RLAQIQQAKKEKEPEYQLLSERGIPRRREFVMQVKVNNEVATGAGPNKKVAKRNAAEAML 442
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 27/192 (14%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ G + IF +++L + V G S
Sbjct: 75 NPKEKTPMCLVNELARFNRMQPQYKLLNERGPAHAKIFTVQLTLGEQ----VWEAEGTSI 130
Query: 132 KEAKHN-AAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEE 190
K+A+H+ AAK++ + ++ R + N P +L M R P +Y +
Sbjct: 131 KKAQHSTAAKALAESVLPRPAPRSPKVDINSNPGSITPTVELNGLAMKRGE-PAIYRPLD 189
Query: 191 TTGLPHER-------------------MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+P+ R +F V V ++ G G++++ A+ AA+ L+
Sbjct: 190 PKPMPNYRANYNFRGMFNQRYHYPIPKIFYVQLSVGSHEFIGEGRTRQAARHNAAMKALQ 249
Query: 232 FLETVPIEIPEK 243
L P IPE+
Sbjct: 250 ALRNEP--IPER 259
>gi|321476628|gb|EFX87588.1| hypothetical protein DAPPUDRAFT_221551 [Daphnia pulex]
Length = 200
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 35/189 (18%)
Query: 75 DRTPVSLMQELLSRR--GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAI-GSGKSK 131
++T VS+ EL ++ G A Y L+ +G + F +++ L +++ G G +K
Sbjct: 14 EKTFVSVFHELCTKFDFGVA-MYNLVAEQGEPHSRTFLMNLTV---DMLGISVEGIGLTK 69
Query: 132 KEAKHNAAKSVLDQLIGRDD----------------------EKLMCQKENLFK--VEP- 166
+AKH+AA ++ Q+ R+ EK KE++ K EP
Sbjct: 70 MQAKHDAAYKMMFQI--RETYRAGGTLNSVPRVKLVSCCEWLEKCGTLKEDIPKPPTEPT 127
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
NP G L E C+TR P Y T+G H + + + + EG GKSKK AK A
Sbjct: 128 LNPAGVLTEWCLTRLSNLPDYRVVRTSGPSHSKTYFMTCKLGDRVTEGEGKSKKAAKNVA 187
Query: 226 ALNMLKFLE 234
A ML+ LE
Sbjct: 188 AGKMLQILE 196
>gi|338728179|ref|XP_003365631.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Equus caballus]
Length = 503
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 138/353 (39%), Gaps = 62/353 (17%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 101 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 156
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 157 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 216
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 217 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 276
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G +T L+P + ++++ H V S T G L
Sbjct: 277 LQDQLDKTGENKGWSGPKAGFPEPTSNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 336
Query: 292 EKLLS-------------------TRNLIDEVEDPILYLE-------------DLSDELK 319
K ++ R L+ P + S +L+
Sbjct: 337 PKDMNQPSSSFFSISPTSNSSATIARELLMNGTSPAEAVGLKGSSPTPPCSPVQPSKQLE 396
Query: 320 Y--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRAL 369
Y R+ + + G + + LT PV + F G+SIE + +A AL
Sbjct: 397 YLARIQGFQVHYCDRQSGRECVTCLTLAPVQMTFHAIGSSIEASHDQAALSAL 449
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 54 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 110
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 111 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 169
Query: 235 TVP 237
+P
Sbjct: 170 KLP 172
>gi|338728177|ref|XP_003365630.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Equus caballus]
Length = 478
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G +T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKAGFPEPTSNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|390336600|ref|XP_797998.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A-like
[Strongylocentrotus purpuratus]
Length = 159
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
L+DL +E ++V +V IEE+++A +Q ++L T PVTV G S A + + AL
Sbjct: 70 LQDLGNEQSFKVEYVPIEEQTQAGHYQCFVRLQTAPVTVCFANGLSRNDAMETSAHNALQ 129
Query: 371 FLQIM 375
+L++M
Sbjct: 130 YLKVM 134
>gi|338728175|ref|XP_003365629.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Equus caballus]
Length = 537
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G +T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKAGFPEPTSNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|82469860|gb|ABB77188.1| R2D2 [Drosophila yakuba]
Length = 321
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE ++ + T P YE I E + + ++ + A G+G+SK++
Sbjct: 10 NKSAVSALQEFCAKTKNTPPLYEFIDGE----DGGYVCKVDMMEVE----AYGNGRSKRD 61
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVG---------------QLQEACMT 178
AKH AA ++L ++ KL + L E N +G +L++ C+
Sbjct: 62 AKHLAAVNILRKI-----RKLPGVENVLQDSESNTMGDPGQEVINLNRDMLRELRDYCVR 116
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
+ P P E + +G P+ F C V G KK A++ AA+ ML + +
Sbjct: 117 HEMPLPTIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 173
>gi|82469846|gb|ABB77181.1| R2D2 [Drosophila simulans]
Length = 311
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS + E ++ T P Y I+ E + F ++ L A+G+G+SK++
Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYNFIKGE----DGGFVCKVELLE----LEALGNGRSKRD 54
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQK-------ENLFKVEPNPVGQLQEACMTRKWPPPVY 186
AKH AA +++ ++ + M Q E + + + + +L++ C+ P P
Sbjct: 55 AKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVRHDMPLPCI 114
Query: 187 ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 115 EVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|195471419|ref|XP_002088002.1| r2d2 [Drosophila yakuba]
gi|82469854|gb|ABB77185.1| R2D2 [Drosophila yakuba]
gi|82469858|gb|ABB77187.1| R2D2 [Drosophila yakuba]
gi|82469862|gb|ABB77189.1| R2D2 [Drosophila yakuba]
gi|82469864|gb|ABB77190.1| R2D2 [Drosophila yakuba]
gi|82469868|gb|ABB77192.1| R2D2 [Drosophila yakuba]
gi|194174103|gb|EDW87714.1| r2d2 [Drosophila yakuba]
Length = 321
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE ++ + T P YE I E + + ++ + A G+G+SK++
Sbjct: 10 NKSAVSALQEFCAKTKNTPPLYEFIDGE----DGGYVCKVDMMEVE----AYGNGRSKRD 61
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVG---------------QLQEACMT 178
AKH AA ++L ++ KL + L E N +G +L++ C+
Sbjct: 62 AKHLAAVNILRKI-----RKLPGVENVLQDSESNTMGDPGQEVINLNRDMLRELRDYCVR 116
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
+ P P E + +G P+ F C V G KK A++ AA+ ML + +
Sbjct: 117 HEMPLPTIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 173
>gi|82469848|gb|ABB77182.1| R2D2 [Drosophila simulans]
gi|82469852|gb|ABB77184.1| R2D2 [Drosophila simulans]
Length = 311
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS + E ++ T P Y I+ E + F ++ L A+G+G+SK++
Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYNFIKGE----DGGFVCKVELLE----LEALGNGRSKRD 54
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQK-------ENLFKVEPNPVGQLQEACMTRKWPPPVY 186
AKH AA +++ ++ + M Q E + + + + +L++ C+ P P
Sbjct: 55 AKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVRHDMPLPCI 114
Query: 187 ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 115 EVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|82469844|gb|ABB77180.1| R2D2 [Drosophila simulans]
Length = 311
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS + E ++ T P Y I+ E + F ++ L A+G+G+SK++
Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYNFIKGE----DGGFVCKVELLE----LEALGNGRSKRD 54
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQK-------ENLFKVEPNPVGQLQEACMTRKWPPPVY 186
AKH AA +++ ++ + M Q E + + + + +L++ C+ P P
Sbjct: 55 AKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVRHDMPLPCI 114
Query: 187 ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 115 EVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|355779760|gb|EHH64236.1| Double-stranded RNA-binding protein Staufen-like protein 2 [Macaca
fascicularis]
Length = 570
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 27/238 (11%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +K A
Sbjct: 209 ISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLSKKRA 264
Query: 139 AKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRKWPPP 184
A +VL +L ++ + + FK P NP+ +L + +K P
Sbjct: 265 ATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEP 324
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVPIEIP 241
Y G+P R F + V G G +KKIAK+ AA M L + + ++
Sbjct: 325 DYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQ 384
Query: 242 EKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLLEK 293
+K GE+ G G ++T L+P + ++++ H V S T G L K
Sbjct: 385 LEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPK 442
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK-------ENLFKVEPNPVGQLQEACM 177
G GK+++ A+HNAA L L + Q ++ + + + + E +
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDADKSEISLVFEIAL 217
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+ +P
Sbjct: 218 KRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLP 276
>gi|195434340|ref|XP_002065161.1| GK14818 [Drosophila willistoni]
gi|194161246|gb|EDW76147.1| GK14818 [Drosophila willistoni]
Length = 303
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 25/169 (14%)
Query: 76 RTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++ VS +QE ++ + P+Y I E + F + SL A G+G+SK++A
Sbjct: 4 KSAVSALQEFCAKTKNGPPEYNYIDGE----DGGFVCKASLLDME----AFGNGRSKRDA 55
Query: 135 KHNAAKSVL----------DQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPP 184
KH AA ++L + L DD L + + + +L++ C+ + P P
Sbjct: 56 KHLAAVNILRKIRKLPGCSEALNDTDDSN------ELTNLNRDMLKELRDYCVRHEMPLP 109
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
V E + +G P+ F C V G KK A++ AA+ ML +
Sbjct: 110 VIEIVQQSGSPNAPEFVACCTVASITRYGKSDKKKDARQRAAIEMLHVI 158
>gi|149721312|ref|XP_001491884.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Equus caballus]
Length = 569
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G +T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTSNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|427731654|ref|YP_007077891.1| dsRNA-specific ribonuclease [Nostoc sp. PCC 7524]
gi|427367573|gb|AFY50294.1| dsRNA-specific ribonuclease [Nostoc sp. PCC 7524]
Length = 234
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 74 GDRTPVSLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
G P+S +QELL++ G +P +Y I+ +G N PIF R + + A G+G S++
Sbjct: 158 GVENPISTLQELLAKYGISPPQYIDIEKKGPDNAPIFTIRANCIFRGKYLTADGTGGSRR 217
Query: 133 EAKHNAAKSVL 143
EAK NAA +L
Sbjct: 218 EAKRNAAHKLL 228
>gi|148682396|gb|EDL14343.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_a
[Mus musculus]
Length = 370
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 289 EKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGED 248
++ P K GE+
Sbjct: 349 LQDPLDKTGEN 359
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|349604084|gb|AEP99734.1| Double-stranded RNA-binding protein Staufen-like protein 2-like
protein, partial [Equus caballus]
Length = 450
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 48 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 103
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 104 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 163
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 164 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 223
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G +T L+P + ++++ H V S T G L
Sbjct: 224 LQDQLDKTGENKGWSGPKAGFPEPTSNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 283
Query: 292 EK 293
K
Sbjct: 284 PK 285
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 1 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 57
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 58 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 116
Query: 235 TVP 237
+P
Sbjct: 117 KLP 119
>gi|399545692|ref|YP_006559000.1| ribonuclease 3 [Marinobacter sp. BSs20148]
gi|399161024|gb|AFP31587.1| Ribonuclease 3 [Marinobacter sp. BSs20148]
Length = 229
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIGR---DDEKLMCQKE------------NLFKV 164
Y+ +GSG KS + + ++ +IG D + + CQ + +L
Sbjct: 94 YLRLGSGELKSGGFRRESILADAVESVIGAIYLDSDFVTCQAQILRWFDLRLQNLDLQDT 153
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMGKSKKIAK 222
+ +P +LQE +R++P P+Y+ + G H + F + CA ++ K G G S++IA+
Sbjct: 154 QKDPKTRLQEYLQSRQFPLPIYDVQAVDGEAHNQTFHISCALSSLGRKTTGSGNSRRIAE 213
Query: 223 REAALNMLK 231
++AA N LK
Sbjct: 214 QQAARNALK 222
>gi|148682397|gb|EDL14344.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_b
[Mus musculus]
Length = 402
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK
Sbjct: 204 ANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKL 259
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTR 179
+K AA +VL +L ++ + + FK P NP+ +L + R
Sbjct: 260 SKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQAR 319
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETV 236
K P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 320 KEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKAST 379
Query: 237 PIEIPEKKQGED 248
++ P K GE+
Sbjct: 380 SLQDPLDKTGEN 391
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|332031602|gb|EGI71074.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Acromyrmex echinatior]
Length = 804
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 149/352 (42%), Gaps = 65/352 (18%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PVSL+ E +RG +E++ G + F + ++ + V +G G SKK +K
Sbjct: 421 KSPVSLVHETALKRGLPVSFEVVSESGKPHIRTFMTKCTVGEK----VTVGEGSSKKVSK 476
Query: 136 HNAAKSVLDQL----------------IGRDDEKLMCQKENLFKV--EP----------N 167
AA+ +LD+L + R + NL KV EP N
Sbjct: 477 KRAAELMLDELKRLPPLPATIQNRSMRVKRKPPATKKKSRNLIKVYQEPRAENEAAEEVN 536
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PV +L + ++ PVY + G P R F + + + +G+G +KK+AKR AA
Sbjct: 537 PVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTMGQHSAQGIGPNKKLAKRAAAE 596
Query: 228 NMLKFLE-TVPIEIPEK---KQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYH---T 280
+L L + P P K K GE +E ES K TFL + + Q + T
Sbjct: 597 ALLAQLGYSKPSPQPSKPSIKTGE--NENTESKPRK----VTFLEDEQMNDTQPHSVGGT 650
Query: 281 VFSQKTKGPLL------EKL---LSTRNLIDEVED----------PILYLEDLSDELKYR 321
+ Q G LL KL S + + +E+ + P L LS +
Sbjct: 651 IGRQLVPGLLLVDGGQESKLGNGPSVQIVAEELREQQQQNTAGVSPKDQLHYLSQLFNFS 710
Query: 322 VSFVDIEEKSKADG-FQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
V F D + + + SL+ L+T P V G GA+I ++ +A RAL L
Sbjct: 711 VEFSDFPKGVSINKEYLSLVSLSTDPPQVCHGNGATITASRNQAALRALRTL 762
>gi|432933135|ref|XP_004081822.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A-like [Oryzias
latipes]
Length = 307
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 306 DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAV 365
D I + +LS E + V++ DI+E + +Q L +L+T+PVTV GTG S A +A
Sbjct: 234 DYIQLMLELSLEQGFEVTYFDIDELTVNGQYQCLAELSTSPVTVCHGTGISCSNAHNDAA 293
Query: 366 YRALDFLQIM 375
+ AL +++IM
Sbjct: 294 HSALQYIKIM 303
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N +TP+ ++ E + G P + + + EG ++P F + +++ +G G SK
Sbjct: 28 NNPGKTPIQILHEYGIKSGNHPMFMMEKAEGQAHQPSFVFSVTVGD----VTCVGQGPSK 83
Query: 132 KEAKHNAAKSVLDQLI-----GRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVY 186
K AKH AA++ L+ L G + PN VG LQE + R W P Y
Sbjct: 84 KAAKHQAAEAALNILYTDAGAGHVAATGLSNAAETNNHLPNSVGLLQELALQRGWRLPEY 143
Query: 187 ETEETTGLPHERMFTV 202
TG PH R FTV
Sbjct: 144 TVLRETGPPHIREFTV 159
>gi|82469840|gb|ABB77178.1| R2D2 [Drosophila simulans]
Length = 311
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS + E ++ T P Y I+ E + F ++ L A+G+G+SK++
Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYNFIKGE----DGGFVCKVELLE----LEALGNGRSKRD 54
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQK-------ENLFKVEPNPVGQLQEACMTRKWPPPVY 186
AKH AA +++ ++ + M Q E + + + + +L++ C+ P P
Sbjct: 55 AKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVRHDMPLPXI 114
Query: 187 ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 115 EVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|322786736|gb|EFZ13103.1| hypothetical protein SINV_10097 [Solenopsis invicta]
Length = 159
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 28/152 (18%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ ++L+QE+L + G AP Y + + F +S + A G G SKKEA
Sbjct: 4 NKSVINLLQEVLIKEGCAPSYNFEEKSTNTIDRQFLCNVSCKELN----ASGIGISKKEA 59
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVE----------------------PNPVGQL 172
K NAAK++L LI ++ L+ +L V N VG+L
Sbjct: 60 KQNAAKNMLLLLISKNKTSLLGDTLSLSSVANTGQSFAKVYETSSSYKQSNTVCNYVGKL 119
Query: 173 QEACMTRKWPPP--VYETEETTGLPHERMFTV 202
QE C +K P +YE G H R FT+
Sbjct: 120 QEFCQQQKINPKDILYELISEEGPRHLRTFTI 151
>gi|350583107|ref|XP_003355087.2| PREDICTED: hypothetical protein LOC100516319 [Sus scrofa]
Length = 901
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 195 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 250
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 251 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 310
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 311 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 370
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 371 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 430
Query: 292 EK 293
K
Sbjct: 431 PK 432
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 148 FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEMDDDKDANKSE---ISLVFE 204
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 205 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 263
Query: 235 TVP 237
+P
Sbjct: 264 KLP 266
>gi|327269765|ref|XP_003219663.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Anolis carolinensis]
Length = 721
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 21/201 (10%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +S++ E+ +R +E+ + G + F +S+ + A G G SKK
Sbjct: 317 ANKSEISIVFEIALKRNMPVSFEVTKESGPPHMKSFVTHVSVGE----FSAEGEGNSKKL 372
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTR 179
+K AA +VL +L ++ + + FK P NP+ +L + R
Sbjct: 373 SKKRAAIAVLQELQKLPPLPVIEKPKLQFKKRPRIMLKTGPEYGQGMNPISRLAQIQQAR 432
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETV 236
+ P Y G+P R F + V Y G+G +KKIAKR AA L L + +
Sbjct: 433 REKEPEYLLLSEKGIPRRREFVMQVKVGNYITTGIGPNKKIAKRNAAEVMLLQLGYKASS 492
Query: 237 PIEIPEKKQGEDVDEKGESNG 257
P++ +K GE G++ G
Sbjct: 493 PLQEQPEKSGEIKGWNGQNVG 513
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 35/192 (18%)
Query: 72 NTGDRTPVSLMQELLSRRG-----------TAPKYELIQIEGAINE----PIFK-YRISL 115
N G TP + L +RG AP Y G N+ P+ K + + L
Sbjct: 207 NPGSITPTVQLNGLAMKRGEPAIYRPLDQKPAPNYNF---RGMYNQRYHCPVPKTFHVQL 263
Query: 116 TSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVE 165
T + G G++++ A+HNAA L L + K + ++ K E
Sbjct: 264 TVGDHEF--FGEGRTRQAARHNAAMKALQVLQNEPIPPKLPENTESNKEAEEGKDANKSE 321
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+ + E + R P +E + +G PH + F V + EG G SKK++K+ A
Sbjct: 322 ---ISIVFEIALKRNM-PVSFEVTKESGPPHMKSFVTHVSVGEFSAEGEGNSKKLSKKRA 377
Query: 226 ALNMLKFLETVP 237
A+ +L+ L+ +P
Sbjct: 378 AIAVLQELQKLP 389
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++TP+ L+ EL P Y+ + +G + F +++L ++ + A GS S K+A
Sbjct: 123 EKTPMCLVNELARFSRLQPVYKFLNEQGPAHAKTFTVQLTLGDQT--WEAEGS--SIKKA 178
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPN---PVGQLQEACMTR----------KW 181
H+AA+ L++ +N P P QL M R +
Sbjct: 179 HHSAARRALNE--STLPRPTPRPPKNDVNSNPGSITPTVQLNGLAMKRGEPAIYRPLDQK 236
Query: 182 PPPVYE----TEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL--ET 235
P P Y + P + F V V ++ G G++++ A+ AA+ L+ L E
Sbjct: 237 PAPNYNFRGMYNQRYHCPVPKTFHVQLTVGDHEFFGEGRTRQAARHNAAMKALQVLQNEP 296
Query: 236 VPIEIPEKKQGEDVDEKGE 254
+P ++PE + E+G+
Sbjct: 297 IPPKLPENTESNKEAEEGK 315
>gi|82469818|gb|ABB77167.1| R2D2 [Drosophila sechellia]
Length = 289
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 16/147 (10%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL-------IGRDDEKLMCQKENLFKVEPNPVGQLQEAC 176
A+G+G+SK++AKH AA +++ ++ R D L E + + + + +L++ C
Sbjct: 23 ALGNGRSKRDAKHLAAANIMRKIQILPGMQSMRMDLSLGDLGEEITNLNRDMLKELRDYC 82
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET- 235
+ P P E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 83 VRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISSN 142
Query: 236 --------VPIEIPEKKQGEDVDEKGE 254
+ + +K +G D++E E
Sbjct: 143 SHNLRPDQLQVASTKKFKGADIEETME 169
>gi|322800091|gb|EFZ21197.1| hypothetical protein SINV_10966 [Solenopsis invicta]
Length = 804
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 139/352 (39%), Gaps = 65/352 (18%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PVSL+ E +RG +E++ G + F + ++ + V +G G SKK +K
Sbjct: 421 KSPVSLVHETALKRGLPVSFEVVSESGKPHIRTFMTKCTVGEK----VTVGEGSSKKVSK 476
Query: 136 HNAAKSVLDQL----------------IGRDDEKLMCQKENLFKV--EP----------N 167
AA+ +LD+L + R + NL KV EP N
Sbjct: 477 KRAAELMLDELKRLPPLPATIQNRTMRVKRKPPATKKKSRNLIKVYQEPRAENEAAEEVN 536
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK---KIAKRE 224
PV +L + ++ PVY + G P R F + + + +G+G +K K A E
Sbjct: 537 PVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTMGQHSAQGIGPNKKLAKRAAAE 596
Query: 225 AALNMLKFLETVPIEI-PEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYH---T 280
A L L + + P P K GE E ES K TFL + + Q + T
Sbjct: 597 ALLAQLGYSKPSPQPAKPSIKTGE--SENTESKPRK----VTFLEDEQMNDTQPHSVGGT 650
Query: 281 VFSQKTKGPLL-------------------EKLLSTRNLIDEVEDPILYLEDLSDELKYR 321
+ Q G LL E+L + P L LS +
Sbjct: 651 IGRQLVPGLLLVDGGQESKLGNGPSVQIVAEELREQQQQNTAGVSPKDQLHYLSQLFNFS 710
Query: 322 VSFVDIEEKSKADG-FQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
V F D + + + SL+ L+T P V G GA+I ++ +A RAL L
Sbjct: 711 VEFSDFPKGVSINKEYLSLVSLSTDPPQVCHGNGATITASRNQAALRALRTL 762
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL----IGRDDEKLMCQKEN--LFKV 164
Y ++L R + G G + + A+H+AA L+QL + + + EN L +
Sbjct: 356 YLVTLKVGEREFT--GRGLTGQAARHDAASRALEQLRQLPLPEEIANVNNTNENGTLGGI 413
Query: 165 -EPN-----PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
+PN PV + E + R P +E +G PH R F V G G SK
Sbjct: 414 DDPNAELKSPVSLVHETALKRGL-PVSFEVVSESGKPHIRTFMTKCTVGEKVTVGEGSSK 472
Query: 219 KIAKREAALNMLKFLETVP 237
K++K+ AA ML L+ +P
Sbjct: 473 KVSKKRAAELMLDELKRLP 491
>gi|195577381|ref|XP_002078549.1| r2d2 [Drosophila simulans]
gi|82469850|gb|ABB77183.1| R2D2 [Drosophila simulans]
gi|194190558|gb|EDX04134.1| r2d2 [Drosophila simulans]
Length = 311
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 75 DRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS + E ++ T P Y I+ E + F ++ L A+G+G+SK++
Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYNFIKGE----DGGFVCKVELLE----LEALGNGRSKRD 54
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQK-------ENLFKVEPNPVGQLQEACMTRKWPPPVY 186
AKH AA +++ ++ + M Q E + + + + +L++ C+ P P
Sbjct: 55 AKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVRHDMPLPRI 114
Query: 187 ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 115 EVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 3 [Macaca mulatta]
Length = 1180
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 612 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 668
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
AA+ + L G D+++ E + + NPVG L E + + ++
Sbjct: 669 QMAAEEAMKALHGEATNSMTSDDQVRKIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLV 727
Query: 190 ETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ +G PHE F A V + SKK K+EAA L+ L
Sbjct: 728 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 772
>gi|402856396|ref|XP_003892776.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Papio anubis]
Length = 1181
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
AA+ + L G D+++ E + + NPVG L E + + ++
Sbjct: 670 QMAAEEAMKALHGEATNSMTSDDQVRKIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLV 728
Query: 190 ETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ +G PHE F A V + SKK K+EAA L+ L
Sbjct: 729 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|301608714|ref|XP_002933926.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Xenopus (Silurana) tropicalis]
Length = 534
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 32/186 (17%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P ++ + +R+ ++ LI EG+ ++P+F + + +E G GKSKK A+
Sbjct: 4 PQVVLNKFCARKNLQYEFRLISKEGSPHDPLFTVHLFIKNE---MFGEGQGKSKKAAEKI 60
Query: 138 AAKSVLDQLIGRDDEKLMCQ---------------------------KENLFKVEPNPVG 170
AA+ L L +++ L Q EN N +G
Sbjct: 61 AARIGLAALQNQENPPLAQQPTAAASLDTGLSPLQGSAATAEPSVNGSENHKMSSINYIG 120
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNM 229
L E C + W + + G HE F A VN + EG GK+KK A+++AA
Sbjct: 121 ILNELCQKKSWSRNFRDVDRY-GPDHEPKFYCVAEVNKREYPEGWGKNKKQARKKAAFLA 179
Query: 230 LKFLET 235
L+ L+T
Sbjct: 180 LRLLKT 185
>gi|156387818|ref|XP_001634399.1| predicted protein [Nematostella vectensis]
gi|156221482|gb|EDO42336.1| predicted protein [Nematostella vectensis]
Length = 69
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
N VG+LQE + + W P Y+ + G PH R F + V G G+SKK AKR AA
Sbjct: 6 NSVGRLQEVTVKKGWQYPEYKDVKAKGPPHMRQFEMVVTVGTLTATGKGRSKKDAKRSAA 65
Query: 227 LNML 230
ML
Sbjct: 66 NAML 69
>gi|126321042|ref|XP_001367821.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Monodelphis domestica]
Length = 569
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 26/225 (11%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK
Sbjct: 203 ANKSEISLVFEIGLKRNMPVTFEVIKESGPPHMKNFVTRVSVGE----FSAEGEGNSKKL 258
Query: 134 AKHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTR 179
+K AA S+L +L + KL +K + + K +P NPV L + +
Sbjct: 259 SKKRAASSILQELKKLPPLPVIEKPKLYFRKRPKTILKADPEYGQGMNPVSCLAQILQAK 318
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL---ETV 236
K P Y G R F + V G+G SKKIAKR AA ML L +
Sbjct: 319 KEKEPDYALLSDRGKSRRREFLMQVKVGSAVATGIGLSKKIAKRNAAEAMLLHLGYKTST 378
Query: 237 PIEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ 276
PI+ +K E+ + + G T +T L+P I ++++
Sbjct: 379 PIQEQLEKTVENKEWNSQKIGFPQTTSNTPKGILHLSPDIYQEME 423
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQKENLFKVEPNPVGQLQ-----EACMT 178
G GK+++ A+HNAA L L EKL E+ +VE + + E +
Sbjct: 158 FGEGKTRQAARHNAATKALQALQNEPIPEKLPQNGESGKEVEEKDANKSEISLVFEIGLK 217
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
R P +E + +G PH + F V + EG G SKK++K+ AA ++L+ L+ +P
Sbjct: 218 RNMPV-TFEVIKESGPPHMKNFVTRVSVGEFSAEGEGNSKKLSKKRAASSILQELKKLP 275
>gi|82469804|gb|ABB77160.1| R2D2 [Drosophila mauritiana]
Length = 302
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK-------ENLFKVEPNPVGQLQEAC 176
A+G+G+SK++AKH AA +++ ++ + M Q E + + + + +L++ C
Sbjct: 36 ALGNGRSKRDAKHLAAANIMRKIQILPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYC 95
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET- 235
+ P P E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 96 VRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISSN 155
Query: 236 --------VPIEIPEKKQGEDVDEKGE 254
+ + K +G D++E E
Sbjct: 156 SHNLRPDQLQVASTNKFKGADIEETME 182
>gi|307213091|gb|EFN88613.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Harpegnathos saltator]
Length = 797
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 141/349 (40%), Gaps = 59/349 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PVSL+ E +RG +E++ G + F + ++ + V +G G SKK +K
Sbjct: 415 KSPVSLVHETALKRGLPVSFEVVSESGKPHIRTFMTKCTVGDK----VTVGEGSSKKVSK 470
Query: 136 HNAAKSVLDQL----------------IGRDDEKLMCQKENLFKV--EP----------N 167
AA+ +L++L + R + NL KV EP N
Sbjct: 471 KRAAELMLEELKRLPPLPASIQNRSLRVKRKPPATKKKSRNLIKVYQEPRSENEAAEEVN 530
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PV +L + ++ PVY + G P R F + + + +G+G +KK+AKR AA
Sbjct: 531 PVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTMGQHSAQGIGPNKKLAKRAAAE 590
Query: 228 NMLKFLE-TVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYH---TVFS 283
+L L + P P K + D + N TFL + IQ + T+
Sbjct: 591 ALLAQLGYSKPSPQPAKPSIKTGDSE---NTETKPRKVTFLEDDQVNDIQPHSVGGTIGR 647
Query: 284 QKTKGPLL-------------------EKLLSTRNLIDEVEDPILYLEDLSDELKYRVSF 324
Q G LL E+L + P L LS L + V F
Sbjct: 648 QLAPGLLLVDGGQESKLGSGPSVQIVAEELRGQQQQNSAGVSPKDQLHYLSQLLNFSVEF 707
Query: 325 VDIEEKSKADG-FQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
D + + + SL+ L+T P V G GA+I ++ +A RAL L
Sbjct: 708 SDFPKGVSINKEYLSLVSLSTDPPQVCHGNGATIAASRNQAALRALRTL 756
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL--IGRDDEKLMCQKEN----LFKV 164
Y ++L R + G G + + A+H+AA L+QL + +E N L +
Sbjct: 350 YLVTLKVGEREFT--GRGLTGQAARHDAASRALEQLRQLPLPEEVANANNSNENGTLGGI 407
Query: 165 -EPN-----PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
+PN PV + E + R P +E +G PH R F V G G SK
Sbjct: 408 DDPNAELKSPVSLVHETALKRGL-PVSFEVVSESGKPHIRTFMTKCTVGDKVTVGEGSSK 466
Query: 219 KIAKREAALNMLKFLETVP 237
K++K+ AA ML+ L+ +P
Sbjct: 467 KVSKKRAAELMLEELKRLP 485
>gi|82469800|gb|ABB77158.1| R2D2 [Drosophila biarmipes]
Length = 302
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 25/150 (16%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL------IGRDDEKLMCQK-------ENLFKVEPNPVG 170
A G+G+SK++AKH AA ++L ++ G DE C+ E L + + +
Sbjct: 33 AYGNGRSKRDAKHLAAANILRKIRKLPGVSGLLDE---CETKSVGDLCEELTNLNRDMLK 89
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
+L++ C+ + P P E + G P+ F C V G KK A++ AA+ ML
Sbjct: 90 ELRDYCVRHEMPLPTIEIVQQCGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEML 149
Query: 231 KFLETVPIEI-PEKKQ--------GEDVDE 251
+ ++ P+K Q G DVDE
Sbjct: 150 AVISNEADDMRPDKMQVVSSKPAEGLDVDE 179
>gi|349803059|gb|AEQ17002.1| putative interferon-inducible double stranded rna-dependent protein
kinase activator a [Pipa carvalhoi]
Length = 83
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 306 DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAV 365
D + L D++ EL VS++DIEE S +Q L +L+T PVTV GTG + A+ EA
Sbjct: 16 DYVKMLGDVAVELCLHVSYLDIEELSVNGQYQCLAELSTNPVTVCHGTGITCGNAQNEAA 75
Query: 366 YRALDFLQ 373
+ AL +L+
Sbjct: 76 HNALQYLK 83
>gi|296480591|tpg|DAA22706.1| TPA: staufen homolog 2 [Bos taurus]
Length = 384
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
P Y G+P R F + V G G +KKIAK+ AA ML
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAML 338
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 126 FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSE---ISLVFE 182
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 183 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 241
Query: 235 TVP 237
+P
Sbjct: 242 KLP 244
>gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17]
gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17]
Length = 229
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIGR---DDEKLMCQKE------------NLFKV 164
Y+ +GSG KS + + ++ +IG D + + CQ + +L
Sbjct: 94 YLRLGSGELKSGGFRRESILADAVESVIGAIYLDSDFVTCQAQILRWFDLRLQNLDLQDT 153
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMGKSKKIAK 222
+ +P +LQE +R++P P+Y+ G H + F + CA ++ K G G S++IA+
Sbjct: 154 QKDPKTRLQEYLQSRQFPLPIYDVLSVDGEAHNQTFHISCALSSLGRKTTGSGNSRRIAE 213
Query: 223 REAALNMLK 231
++AA N LK
Sbjct: 214 QQAARNALK 222
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 65 RLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RL+ + L + P + +QE L SR+ P Y+++ ++G + F +L+S R
Sbjct: 144 RLQNLDLQDTQKDPKTRLQEYLQSRQFPLPIYDVLSVDGEAHNQTFHISCALSSLGR--K 201
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL 146
GSG S++ A+ AA++ L +L
Sbjct: 202 TTGSGNSRRIAEQQAARNALKEL 224
>gi|339320327|ref|YP_004680022.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
gi|338226452|gb|AEI89336.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
Length = 222
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 74 GDRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
G++ SL+QE R G P Y++++ EG + P F IS+T+ AIG GKSKK
Sbjct: 146 GEKDKKSLLQEWAQRDNGALPIYKIVKREGVAHSPTF--TISVTAHD--MQAIGIGKSKK 201
Query: 133 EAKHNAAKSVLDQL 146
EA+ NAA ++L Q+
Sbjct: 202 EAEQNAATALLSQI 215
>gi|82469816|gb|ABB77166.1| R2D2 [Drosophila santomea]
Length = 309
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 79 VSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
VS +QE ++ + P YE I E + + ++ L A G+G+SK++AKH
Sbjct: 2 VSALQEFCAKTKNIPPAYEFIDGE----DGGYVCKVDLMEVE----AYGNGRSKRDAKHL 53
Query: 138 AAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVG---------------QLQEACMTRKWP 182
AA ++L ++ KL + L E N +G +L++ C+ + P
Sbjct: 54 AAVNILRKI-----RKLPGVENILQDSETNTMGDPGQEVINLNRDMLKELRDYCVRHEMP 108
Query: 183 PPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
P E + +G P+ F C V G KK A++ AA+ ML + +
Sbjct: 109 LPTIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 161
>gi|440895633|gb|ELR47776.1| Double-stranded RNA-binding protein Staufen-like protein 2, partial
[Bos grunniens mutus]
Length = 510
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+ R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMQRRREFVMSVRVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|213511414|ref|NP_001133664.1| double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
gi|209154860|gb|ACI33662.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
Length = 701
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+++ G + F R+++ + G GKSKK A
Sbjct: 275 NKSEISQVFEIALKRNMPVNFEVLKEAGPPHMKSFMVRVAVGE----FCGEGEGKSKKIA 330
Query: 135 KHNAAKSVLDQLIGRDDEKLMC-------------QKENLFKVEP------NPVGQLQEA 175
K AA +VL++L R + + C + + P NP+ +L +
Sbjct: 331 KKLAATAVLEELR-RLPQLIPCVEKMQPVRIKKKTKSIIKLQTSPEYGQGMNPISRLAQI 389
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+K P Y GLP R F + V EG+G SKK+AK+ AA ML+ L
Sbjct: 390 QQAKKEKEPEYNMLTERGLPRRREFVMQVMVCGQCAEGLGPSKKVAKKNAAEKMLELL 447
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ +G + IF R+SL + G S
Sbjct: 69 NPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHWE----AEGTSI 124
Query: 132 KEAKH------------------NAAKSVLDQLIGRDDEKLMCQK---ENLFK-VEPNPV 169
K+A+H N ++ D + + +C K + ++K ++P P
Sbjct: 125 KKAQHSAAATALAQTTMPKPSMRNNTRNNTDCMTQTVELNSLCMKLGMKPMYKPIDPYPG 184
Query: 170 GQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAY--VNVYKEE--GMGKSKKIAKREA 225
+ + P P + + P + V + +N+ ++ G G+++++AK +A
Sbjct: 185 MRPPSFNYNIRAPGPYQRSMQQYYYPFPPVGPVLYHMELNIGGQQFHGKGRTRQLAKHDA 244
Query: 226 ALNMLKFLETVPI---EIPEKKQGEDVDE 251
A LK L+ PI ++PE GED +E
Sbjct: 245 ASKALKTLQKEPILLQQLPEMN-GEDTEE 272
>gi|317419872|emb|CBN81908.1| Double-stranded RNA-binding protein Staufen homolog 2
[Dicentrarchus labrax]
Length = 618
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+SL+ E+ +R + +E+++ G + F R+++ + A G G SKK +K A
Sbjct: 209 ISLVYEIALKRNLSVNFEVLKESGPPHMKSFLTRVTVGE----FSAEGEGNSKKLSKKRA 264
Query: 139 AKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRKWPPP 184
A S+L L + + + + + K P NP+ +L + +K P
Sbjct: 265 ALSILQDLKKLPFIPAVEKPKTHYKKRTKTILKTGPDYGQGMNPISRLAQIQQAKKEKEP 324
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKK 244
Y G+P R F + VN G G +KK+AKR AA ML L +P+
Sbjct: 325 EYLLLSERGMPRRREFIMQVKVNNEVATGTGPNKKVAKRNAAEAMLLQLGYKASTVPQNP 384
Query: 245 QGEDVDEKGESNGLK 259
++D KG NG K
Sbjct: 385 --TEMDNKGW-NGQK 396
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ G + IF +++L + V G S
Sbjct: 3 NPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKIFTVQLTLGEQ----VWEAEGTSI 58
Query: 132 KEAKHNAAKSVLDQ-LIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEE 190
K+A+H+ A LD+ ++ R + N P +L M R P +Y +
Sbjct: 59 KKAQHSTAAKALDESVLPRPAPRSPKVDINSNPGSITPTVELNGLAMKRGE-PAIYRPLD 117
Query: 191 TTGLPHER-------------------MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+P+ R +F V V ++ G G++++ A+ AA+ L+
Sbjct: 118 PKPMPNYRANYNFRGMFNQRYHYPVPKIFYVQLSVGSHEFIGEGRTRQAARHSAAMKALQ 177
Query: 232 FLETVPIEIPEKKQGEDVDEKGES 255
L P IPE+ + +EKGE+
Sbjct: 178 ALRNEP--IPERPP-QSPEEKGET 198
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 108 IFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK-------EN 160
IF ++S+ S + IG G++++ A+H+AA L L + Q E
Sbjct: 145 IFYVQLSVGS----HEFIGEGRTRQAARHSAAMKALQALRNEPIPERPPQSPEEKGETEE 200
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
+ + + E + R +E + +G PH + F V + EG G SKK+
Sbjct: 201 GSDASKSEISLVYEIALKRNLSV-NFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKL 259
Query: 221 AKREAALNMLKFLETVPI 238
+K+ AAL++L+ L+ +P
Sbjct: 260 SKKRAALSILQDLKKLPF 277
>gi|328784563|ref|XP_003250468.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Apis mellifera]
Length = 763
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 154/378 (40%), Gaps = 77/378 (20%)
Query: 58 LPLEEAARLEVMRLNTGD--------------RTPVSLMQELLSRRGTAPKYELIQIEGA 103
LPL E EV+ NTG+ ++PVSL+ E +RG +E++ G
Sbjct: 374 LPLPE----EVVNCNTGENGTLGEAKDPIAELKSPVSLVHEKALKRGLPVSFEVVSEIGK 429
Query: 104 INEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL----------------I 147
+ F+ + ++ + V +G G SKK +K +AA+ +L++L +
Sbjct: 430 PHIRTFRTKCTVGDK----VTLGEGPSKKVSKKHAAEFMLEELNRLPPLPETIQNRLVRV 485
Query: 148 GRDDEKLMCQKENLFKV--EP----------NPVGQLQEACMTRKWPPPVYETEETTGLP 195
R + NL KV EP NPV +L + ++ PVY E G P
Sbjct: 486 KRKPPATKKKSRNLIKVYQEPRSESDAAEEVNPVSRLDQIQQAKREKEPVYNLIEEKGAP 545
Query: 196 HERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGES 255
+ F + + + +G+G +KK+AKR AA +L L P+ + + + GES
Sbjct: 546 RRKEFVMEVTMGQHSAQGIGPNKKLAKRAAAEALLAQLG---YSKPQPQPTKPSIKTGES 602
Query: 256 -NGLKHTHDSTFLTPQILKKIQQY----HTVFSQKTKGPLL------------------- 291
N + TFL + + + Q + T+ Q G LL
Sbjct: 603 ENTEQKPRKVTFLEDEQINETQSHPPVGGTIGRQLVPGLLLVDGGQESKLGSGPSVQIVA 662
Query: 292 EKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFC 351
E+L + P L+ LS + V F D + + + SL+ L+T P V
Sbjct: 663 EELRGQQQQNPPTVSPKDQLKYLSQLFNFSVEFNDFPKGAVNKEYLSLVTLSTDPPQVCH 722
Query: 352 GTGASIEVAKIEAVYRAL 369
G G + ++ EA +AL
Sbjct: 723 GNGPTRTASRNEAALKAL 740
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGA---------------INEPIFK-YRISLTS 117
G+ P + L +RG A Y Q A I P F Y +
Sbjct: 274 GNLPPTVELNALAMKRGEATVYTFRQAPPAGLQQYVTNSLGHFPRIFNPRFPTYNRGFHA 333
Query: 118 ESRLYVA---------IGSGKSKKEAKHNAAKSVLDQL--IGRDDEKLMCQ--------- 157
E +LY+ IG G + + A+H+AA L+QL + +E + C
Sbjct: 334 EPQLYLVSLKVGEREFIGRGLTGQAARHDAASKALEQLRQLPLPEEVVNCNTGENGTLGE 393
Query: 158 -KENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGK 216
K+ + +++ +PV + E + R P +E G PH R F V G G
Sbjct: 394 AKDPIAELK-SPVSLVHEKALKRGL-PVSFEVVSEIGKPHIRTFRTKCTVGDKVTLGEGP 451
Query: 217 SKKIAKREAALNMLKFLETVPIEIPEKKQ 245
SKK++K+ AA ML+ L +P +PE Q
Sbjct: 452 SKKVSKKHAAEFMLEELNRLP-PLPETIQ 479
>gi|82469808|gb|ABB77162.1| R2D2 [Drosophila pallidosa]
Length = 293
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 124 AIGSGKSKKEAKHNAAKSVL----------DQLIGRDDE---KLMCQKENLFKVEPNPVG 170
A G+G+SK++AKH AA +++ D L DDE L + L + +
Sbjct: 22 AYGNGRSKRDAKHLAASNIMRKVRVLPGASDLLKDMDDEDQSNLNHLVDELTNTNRDMLK 81
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
+L++ C+ + P P E + G P+ F C V G KK A++ AA+ ML
Sbjct: 82 ELRDFCVRHEMPLPTIEIVQQCGTPNAPEFVACCKVASLTRYGKSDKKKDARQRAAIEML 141
Query: 231 KFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
+ + +E ++ + V +KG + L D
Sbjct: 142 AVISS-GMEDLRAEKMQVVSKKGTESSLNDALD 173
>gi|340372411|ref|XP_003384737.1| PREDICTED: protein SON-like [Amphimedon queenslandica]
Length = 136
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKRE 224
+PV LQE + + W PP YE TG PH R+F VN Y+ +KK+AK +
Sbjct: 60 HPVCALQELSVKKLWDPPSYEIVSETGPPHMRIFIYKVTVNGDTYQPSCGTSNKKLAKAQ 119
Query: 225 AALNMLKFL 233
AAL LK L
Sbjct: 120 AALTCLKSL 128
>gi|355722281|gb|AES07527.1| staufen, RNA binding protein,-like protein 2 [Mustela putorius
furo]
Length = 390
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 168 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 223
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 224 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 283
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 284 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 343
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ 276
++ K GE+ G G ++T L+P + ++++
Sbjct: 344 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEME 387
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 121 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 177
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 178 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 236
Query: 235 TVP 237
+P
Sbjct: 237 KLP 239
>gi|397522633|ref|XP_003831364.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Pan paniscus]
gi|221039638|dbj|BAH11582.1| unnamed protein product [Homo sapiens]
Length = 390
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 185 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 240
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 241 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 300
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
P Y G+P R F + V G G +KKIAK+ AA ML
Sbjct: 301 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAML 350
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 138 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 194
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 195 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 253
Query: 235 TVP 237
+P
Sbjct: 254 KLP 256
>gi|426331795|ref|XP_004026879.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Gorilla gorilla gorilla]
Length = 1181
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
AA+ + L G D ++ E + + NPVG L E + + ++
Sbjct: 670 QMAAEEAMKALHGEASNSMASDNQVRKIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLV 728
Query: 190 ETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ +G PHE F A V + SKK K+EAA L+ L
Sbjct: 729 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|427707835|ref|YP_007050212.1| RNAse III [Nostoc sp. PCC 7107]
gi|427360340|gb|AFY43062.1| RNAse III [Nostoc sp. PCC 7107]
Length = 234
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 78 PVSLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P+S +QELL++ G +P Y I G + PIF R + T R A G G SK+EAK
Sbjct: 162 PISTLQELLAQYGISPPTYTDIDRAGRDHAPIFTIRATCTFRGRYLTADGDGNSKREAKK 221
Query: 137 NAAKSVL 143
AA+ +L
Sbjct: 222 KAAEKLL 228
>gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
sapiens]
gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens]
Length = 1181
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
AA+ + L G D ++ E + + NPVG L E + + ++
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQVRKIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLV 728
Query: 190 ETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ +G PHE F A V + SKK K+EAA L+ L
Sbjct: 729 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|395845298|ref|XP_003795378.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Otolemur garnettii]
Length = 1136
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G++ ++ L+ EG ++P F+Y +++ +++ V S SKK AK
Sbjct: 561 KSPVTALLECVHKLGSSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTV---SAPSKKVAK 617
Query: 136 HNAAKSVLDQLIGR----DDEK--LMCQKENLFKV-------EPNPVGQLQEACMTRKWP 182
AA+ + L G DD+ C K + ++ NPVG L E + +
Sbjct: 618 QMAAEEAIKALHGEATSSDDQVGLFSCSKHTVRRINELVKYLNTNPVGGLLEYARSHGFA 677
Query: 183 PPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
++ + +G PHE F A V + SKK K+EAA L+ L
Sbjct: 678 AE-FKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 728
>gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
Length = 886
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 374
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
AA+ + L G D ++ E + + NPVG L E + + ++
Sbjct: 375 QMAAEEAMKALHGEATNSMASDNQVRKIGELVRYLNTNPVGGLLEYARSHGFAAE-FKLV 433
Query: 190 ETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ +G PHE F A V + SKK K+EAA L+ L
Sbjct: 434 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 478
>gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens]
Length = 1181
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
AA+ + L G D ++ E + + NPVG L E + + ++
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQVRKIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLV 728
Query: 190 ETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ +G PHE F A V + SKK K+EAA L+ L
Sbjct: 729 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|348512174|ref|XP_003443618.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Oreochromis niloticus]
Length = 663
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+SL+ E+ +R + +E+++ G + F R+++ + A G G SKK +K A
Sbjct: 256 ISLVYEIALKRNLSVNFEVLKESGPPHMKSFLTRVTVGE----FSAEGEGNSKKLSKKRA 311
Query: 139 AKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRKWPPP 184
A S+L L + + + + + K P NP+ +L + +K P
Sbjct: 312 ALSILQDLKKLPSIPTVEKPKTHYKKRTKTILKTGPDYGQGMNPISRLAQIQQAKKEKEP 371
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKK 244
Y G+P R F + VN G G +KK+AKR AA ML L +P+
Sbjct: 372 EYLLLSERGMPRRREFIMQVKVNNEVATGTGPNKKVAKRNAAEAMLLQLGYKASTVPQNP 431
Query: 245 QGEDVDEKGESNGLK 259
++D KG NG K
Sbjct: 432 --AEMDNKGW-NGQK 443
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 108 IFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD--DEKLMCQKE------ 159
IF ++S+ S + IG G++++ A+HNAA L L + C +E
Sbjct: 192 IFYVQLSVGS----HEFIGEGRTRQAARHNAAMKALQALRNEPIPERPPQCSEEKGETEE 247
Query: 160 --NLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKS 217
+ K E + + E + R +E + +G PH + F V + EG G S
Sbjct: 248 GADASKSE---ISLVYEIALKRNLSV-NFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNS 303
Query: 218 KKIAKREAALNMLKFLETVP 237
KK++K+ AAL++L+ L+ +P
Sbjct: 304 KKLSKKRAALSILQDLKKLP 323
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 28/204 (13%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ G + IF +++L + V G S
Sbjct: 50 NPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKIFTVQLTLGEQ----VWEAEGTSI 105
Query: 132 KEAKHN-AAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEE 190
K+A+H+ AAK++ + ++ R + N P +L M R P +Y +
Sbjct: 106 KKAQHSTAAKALAESVLPRPAPRSPKADINSNPGSITPTVELNGLAMKRGE-PAIYRPLD 164
Query: 191 TTGLPHER-------------------MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+P+ R +F V V ++ G G++++ A+ AA+ L+
Sbjct: 165 PKPMPNYRANYNFRGMFNQRYHYPVPKIFYVQLSVGSHEFIGEGRTRQAARHNAAMKALQ 224
Query: 232 FLETVPIEIPEKKQGEDVDEKGES 255
L P IPE+ + +EKGE+
Sbjct: 225 ALRNEP--IPERPP-QCSEEKGET 245
>gi|71896437|ref|NP_001026112.1| double-stranded RNA-binding protein Staufen homolog 2 [Gallus
gallus]
gi|53130432|emb|CAG31545.1| hypothetical protein RCJMB04_7n10 [Gallus gallus]
Length = 472
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +S++ E+ +R +E+I+ G + F R+++ + A G G SKK
Sbjct: 276 ANKSEISVVFEIALKRNIPVSFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSKKL 331
Query: 134 AKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTR 179
+K AA SVL +L ++ + + FK P NP+ +L + +
Sbjct: 332 SKERAAMSVLQELKKLPPLPVIEKPKLYFKKRPKTILKTGPEYGQGMNPISRLAQIQQAK 391
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
K P Y G+P R F + + G G +KKIAKR AA ML
Sbjct: 392 KEKEPEYVLLSERGMPRRREFVMQVKIGNEITTGTGPNKKIAKRNAAEAML 442
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQKENLFKVEPNP------VGQLQEACM 177
G GK+++ A+HNAA L L EKL E + E + + + E +
Sbjct: 230 FGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGEAGKETEEDKDANKSEISVVFEIAL 289
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
R P +E + +G PH + F V + EG G SKK++K AA+++L+ L+ +P
Sbjct: 290 KRNIPV-SFEVIKESGPPHMKSFVTRVTVGEFTAEGEGNSKKLSKERAAMSVLQELKKLP 348
>gi|328720070|ref|XP_003246941.1| PREDICTED: hypothetical protein LOC100572663 [Acyrthosiphon pisum]
Length = 474
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
++ PV+++ E ++ P Y LI ++N FKY ++L +VA G SKKE
Sbjct: 256 SNKQPVTILNEYATKNHLVPHYNLIYDGSSLNIASFKYSVNLDK----FVAEGEATSKKE 311
Query: 134 AKHNAAKSVLDQLIG 148
AKH AA ++L ++I
Sbjct: 312 AKHLAASNLLKKIIN 326
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 39/193 (20%)
Query: 73 TGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
+ D++P++++ E ++ P Y LI +++ FKY ++L +VA G G SK
Sbjct: 16 SSDKSPITILNEYAAQNHLVVPHYSLIHDGSSLSIVSFKYSVNLDK----FVAEGKGSSK 71
Query: 132 KEAKHNAAKSVLDQLIGRDDEKLM------CQ--------KENLFKVEPNPVGQLQE--- 174
KEAK AA ++L ++I D +L+ C K N F + N ++ +
Sbjct: 72 KEAKQLAASNLLKKIIN-DKPQLLNSDFKECAISSYGNNIKLNTFFTKKNKTIKVDQQDM 130
Query: 175 ---ACMTRKWPPPVYETEETTG--LPHERMFTVCAYVNVYK-----------EEGMGKSK 218
+ ++ K P + T +PH + + +N+ EG G SK
Sbjct: 131 SAYSILSNKHPVAIVNEYATKNHFVPHYNLIYDGSSLNIASFKYSVNLDKIVAEGEGFSK 190
Query: 219 KIAKREAALNMLK 231
+ AK AA N+LK
Sbjct: 191 REAKLWAATNLLK 203
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 36/190 (18%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
++ PV+++ E ++ P Y LI ++N FKY ++L VA G G SK+E
Sbjct: 137 SNKHPVAIVNEYATKNHFVPHYNLIYDGSSLNIASFKYSVNLDK----IVAEGEGFSKRE 192
Query: 134 AKHNAAKSVLD-------QLIGRDDEKLMCQ------KENLFKVEPNPVGQLQE------ 174
AK AA ++L QL+ D + K N F + N ++ +
Sbjct: 193 AKLWAATNLLKKIFNDKPQLLNTDFNECAISPYDKNIKLNAFFTKMNKANEVDQQDTHVD 252
Query: 175 ACMTRKWPPPVYETEETTG--LPHERMFTVCAYVNV-----------YKEEGMGKSKKIA 221
+ ++ K P + T +PH + + +N+ + EG SKK A
Sbjct: 253 SSLSNKQPVTILNEYATKNHLVPHYNLIYDGSSLNIASFKYSVNLDKFVAEGEATSKKEA 312
Query: 222 KREAALNMLK 231
K AA N+LK
Sbjct: 313 KHLAASNLLK 322
>gi|82469810|gb|ABB77163.1| R2D2 [Drosophila paralutea]
Length = 306
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQ---LIGRDDEKLMCQK-------ENLFKVEPNPVGQLQ 173
+ G+G+SK++AKH AA ++L + L G C+ E L + + + +L+
Sbjct: 37 SYGNGRSKRDAKHLAAANILRKIRKLPGVSSLLEECETSSVTDLCEELTNLNRDMLKELR 96
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+ C+ + P P E + +G P+ F C V G KK A++ AA+ ML +
Sbjct: 97 DYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLAVI 156
Query: 234 ETVPIEI-PEKKQ--------GEDVDEKGE 254
++ P+K Q G DVDE E
Sbjct: 157 SNDADDMRPDKMQVVSTKPAEGLDVDETLE 186
>gi|349803963|gb|AEQ17454.1| putative double-stranded rna-binding protein staufen 2
[Hymenochirus curtipes]
Length = 288
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 34/227 (14%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +SL+ E+ +R +E+I+ G + F R+++ ++A G G SKK
Sbjct: 33 ANKSEISLVFEISLKRNLPLSFEVIKESGPPHMKSFVTRVTVGD----FIAEGEGNSKKL 88
Query: 134 AKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTR 179
AK AA +VL +L I + + + + + K P NP+ +L + +
Sbjct: 89 AKRRAAATVLQELSKLPPLPVIEKPRLYIKRRPKTIIKASPEYGQGMNPISRLAQIQQAK 148
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL---ETV 236
K P Y G+ R F + V G G +KK AKR AA ML L +
Sbjct: 149 KEKEPEYVLFSERGIQRRREFIMQVEVGEETATGTGPNKKTAKRNAAEAMLLHLGYKASS 208
Query: 237 PIEIPEKKQGE-------DVDEKGESNGLKHTHDSTFLTPQILKKIQ 276
P+ K+GE + D+ G G+ H L+P + ++++
Sbjct: 209 PVLEKAGKRGENQEWDDQNSDQTGTPKGILH------LSPDVYQEME 249
>gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Callithrix jacchus]
Length = 1181
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y + + +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
AA+ + L G D+++ E + + NPVG L E + + ++
Sbjct: 670 QMAAEEAMKALHGEATNSMLSDDQVRRIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLV 728
Query: 190 ETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ +G PHE F A V + SKK K+EAA L+ L
Sbjct: 729 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|351701727|gb|EHB04646.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Heterocephalus glaber]
Length = 511
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATIVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSSPKTGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATIVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Nomascus leucogenys]
Length = 1234
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 666 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 722
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
AA+ + L G D ++ E + + NPVG L E + + ++
Sbjct: 723 QMAAEEAMKALHGEATNSMASDNQVRKIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLV 781
Query: 190 ETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ +G PHE F A V + SKK K+EAA L+ L
Sbjct: 782 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 826
>gi|82469812|gb|ABB77164.1| R2D2 [Drosophila prostipennis]
Length = 301
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQ---LIGRDDEKLMCQK-------ENLFKVEPNPVGQLQ 173
+ G+G+SK++AKH AA ++L + L G C+ E L + + + +L+
Sbjct: 32 SYGNGRSKRDAKHLAAANILRKIRKLPGVSSLLEECETSSATDLCEELTNLNRDMLKELR 91
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+ C+ + P P E + +G P+ F C V G KK A++ AA+ ML +
Sbjct: 92 DYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLAVI 151
Query: 234 ETVPIEI-PEKKQ--------GEDVDEKGE 254
++ P+K Q G DVDE E
Sbjct: 152 SNEADDMRPDKMQVVSTKPSEGLDVDETLE 181
>gi|157116156|ref|XP_001658385.1| staufen [Aedes aegypti]
gi|108876611|gb|EAT40836.1| AAEL007470-PA [Aedes aegypti]
Length = 1103
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N+ ++P+SL+ E+ +R ++E + G P K +L + V G G K
Sbjct: 612 NSDLKSPISLVHEMALKRKLTVQFE---VHGEKGPPHMKVFTTLCKVGSI-VTEGEGNGK 667
Query: 132 KEAKHNAAKSVLDQLIG-------RDDEKLMCQKE----------NLFKV----EP---- 166
K +K AA+ +LD+L ++ L+ QK NL K +P
Sbjct: 668 KLSKKRAAEKMLDELRKLPPASPEKNTRMLLKQKRKVPLPKKKTRNLIKEKGDEDPTGMV 727
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+ +L + RK PVY E G+ R F + + G+G +KK+AK+EAA
Sbjct: 728 NPISRLMQIQQARKEKEPVYTLVEERGVARRREFIMEVSASGKSATGIGPTKKLAKKEAA 787
Query: 227 LNMLKFL 233
N+L L
Sbjct: 788 ENLLVML 794
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 46/215 (21%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
+P+ + E + RK +E G PH ++FT V EG G KK++K+ AA
Sbjct: 617 SPISLVHEMALKRKLTV-QFEVHGEKGPPHMKVFTTLCKVGSIVTEGEGNGKKLSKKRAA 675
Query: 227 LNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKT 286
ML L +P PEK T +LK QK
Sbjct: 676 EKMLDELRKLPPASPEKN-----------------------TRMLLK----------QKR 702
Query: 287 KGPLLEKLLSTRNLIDEV--EDPILYLEDLSDELKYRVS-------FVDIEEKSKADGFQ 337
K PL +K TRNLI E EDP + +S ++ + + + +EE+ A +
Sbjct: 703 KVPLPKK--KTRNLIKEKGDEDPTGMVNPISRLMQIQQARKEKEPVYTLVEERGVARRRE 760
Query: 338 SLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
+++++ + + G G + ++AK EA L L
Sbjct: 761 FIMEVSASGKSA-TGIGPTKKLAKKEAAENLLVML 794
>gi|82469822|gb|ABB77169.1| R2D2 [Drosophila takahashii]
Length = 304
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQ---LIGRDDEKLMCQK-------ENLFKVEPNPVGQLQ 173
A G+G+SK++AKH AA ++L + L G C+ E L + + + +L+
Sbjct: 35 AYGNGRSKRDAKHLAAANILRKIRKLPGVSSLLEECETSSVTDLCEELTNLNRDMLKELR 94
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
+ C+ + P P E + +G P+ F C V G KK A++ AA+ ML +
Sbjct: 95 DYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLAVI 154
Query: 234 ETVPIEI-PEKKQ--------GEDVD 250
++ P+K Q G DVD
Sbjct: 155 SNQADDMRPDKMQVVSTKPAEGLDVD 180
>gi|410919793|ref|XP_003973368.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Takifugu rubripes]
Length = 693
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+ +L + +K P Y GLP R F + VN EGMG SKK+AKR AA
Sbjct: 381 NPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVTVNGQSAEGMGPSKKVAKRNAA 440
Query: 227 LNMLKFL 233
ML+ L
Sbjct: 441 EKMLELL 447
>gi|47229756|emb|CAG06952.1| unnamed protein product [Tetraodon nigroviridis]
Length = 665
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+ +L + +K P Y GLP R F + VN EGMG SKK+AKR AA
Sbjct: 381 NPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVTVNGQSAEGMGPSKKVAKRNAA 440
Query: 227 LNMLKFL 233
ML+ L
Sbjct: 441 EKMLELL 447
>gi|409182784|gb|AFV27009.1| double-stranded RNA-dependent protein kinase [Ctenopharyngodon
idella]
Length = 688
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
VSL+ E R +YE EG + F R + + G+GKSKKEAKH+A
Sbjct: 9 VSLLNEYQQRTQCTVEYEEGSTEGPSHNKTFTMRAIINGQR---YPDGTGKSKKEAKHSA 65
Query: 139 AKSVLDQLIGRDDEKLMCQ-----KENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTG 193
AK+ LD + + + N+ N L E K V++ ETT
Sbjct: 66 AKNALDGIKSTYNTESTTSSVQNISNNMTISHRNYTCWLNEHSQKNKL---VFKARETTK 122
Query: 194 LPHERMFTVCAYVNVY----KE--EGMGKSKKIAKREAAL 227
+ +C YV Y +E E GK+KK AK AAL
Sbjct: 123 MDPGNSTQLCTYVCKYICGDREFPEAYGKNKKEAKEAAAL 162
>gi|73919457|sp|Q7ZW47.2|STAU2_DANRE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
Length = 606
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++ +SL+ E+ +R +E+++ G + F R+++ + A G G SKK +
Sbjct: 205 SKSEISLVYEIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRK 180
K AA S+L +L + + + + + K P NP+ +L + +K
Sbjct: 261 KKRAALSILQELKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KK+AKR AA M L + + P
Sbjct: 321 EKEPEYMLLSERGMPRRREFIMQVKVGTEVTTGTGPNKKVAKRNAAEAMLLQLGYKASTP 380
Query: 238 IE-IPEKKQGEDVDEKG 253
++ PEK +D KG
Sbjct: 381 LQNTPEK-----MDNKG 392
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
IG G++++ A+HNAA L L +++K + + K E + + E
Sbjct: 158 IGEGRTRQAARHNAAMKALQALKNEPIPERPPQCSEEKKETEENSDASKSE---ISLVYE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AAL++L+ L+
Sbjct: 215 IALKRNLPV-NFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAALSILQELK 273
Query: 235 TVPI 238
+P+
Sbjct: 274 KLPV 277
>gi|321457253|gb|EFX68343.1| hypothetical protein DAPPUDRAFT_114652 [Daphnia pulex]
Length = 201
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 75 DRTPVSLMQELLSRR--GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
++T VS+ EL + G A KY + +G + + ++LT + G G +K
Sbjct: 15 EKTFVSVFHELCQKFEFGVA-KYSFVAEQG--DPQYLTFLMNLTVDILGITVEGIGLTKM 71
Query: 133 EAKHNAAKSVLDQL------------IGRDD--------EKLMCQKENLFK--VEP--NP 168
+AKH+AA ++ Q+ + R EKL KE++ K EP NP
Sbjct: 72 QAKHDAAYKMMFQIRETYRAGGTLNTVPRVKLVNCCEWLEKLGTLKEDIPKPPTEPTLNP 131
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
G L E T P P Y +G H + + + ++ EG+GKSKK AK +AA
Sbjct: 132 SGVLLEWRQTTHRPLPEYRVVRKSGPSHSKTYFMTCKLSERVTEGVGKSKKAAKNDAAEK 191
Query: 229 MLKFL 233
ML+ L
Sbjct: 192 MLQIL 196
>gi|28277474|gb|AAH45292.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Danio rerio]
Length = 653
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 144/357 (40%), Gaps = 73/357 (20%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+SL+ E+ +R +E+++ G + F R+++ + A G G SKK +K A
Sbjct: 256 ISLVYEIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGE----FSAEGEGNSKKLSKKRA 311
Query: 139 AKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRKWPPP 184
A S+L +L + + + + + K P NP+ +L + +K P
Sbjct: 312 ALSILQELKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPISRLAQIQQAKKEKEP 371
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVPIE-I 240
Y G+P R F + V G G +KK+AKR AA M L + + P++
Sbjct: 372 EYMLLSERGMPRRREFIMQVKVGTEVTTGTGPNKKVAKRNAAEAMLLQLGYKASTPLQNT 431
Query: 241 PEKKQGEDVDEKGESNGLKHTHDST---------FLTPQILKKIQ------------QYH 279
PEK +D KG NG + T L+P + ++++ +
Sbjct: 432 PEK-----MDNKGW-NGQRAAFPETTSNTQKGILHLSPDVYQEMEASRNKGVPGAPGNFP 485
Query: 280 TV--FSQKTKGPLL------------EKLLSTRN-----LIDEVEDPILYLEDL--SDEL 318
T Q + GP E LLS + L+ + + P L + S +L
Sbjct: 486 TAKEIGQGSAGPFCTPSVGNTATIAKELLLSGTSPTAEALVLKGKAPALACGSIQPSQQL 545
Query: 319 KY--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRALDFL 372
+Y + ++ + + + LT +PV + F G G+SI + +A AL L
Sbjct: 546 EYLAHIQGFQVQYSDRQTDKEFMTYLTLSPVQMTFHGIGSSIPASHDQAALSALKQL 602
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRD--DEKLMCQKE--------NLFKVEPNPVGQLQE 174
IG G++++ A+HNAA L L + C +E + K E + + E
Sbjct: 205 IGEGRTRQAARHNAAMKALQALKNEPIPERPPQCSEEKKETEENSDASKSE---ISLVYE 261
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AAL++L+ L+
Sbjct: 262 IALKRNLPV-NFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAALSILQELK 320
Query: 235 TVPI 238
+P+
Sbjct: 321 KLPV 324
>gi|328719336|ref|XP_003246733.1| PREDICTED: hypothetical protein LOC100572224 isoform 1
[Acyrthosiphon pisum]
Length = 378
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 20/176 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
R+P+ L++ + G P Y ++ + + ++ Y +L +YV GSG +K EAK
Sbjct: 200 RSPMELLRNRIVDHGIIPIYRFLRRNTSGQQFVYSYSCTLFG---MYVE-GSGTTKYEAK 255
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLF------------KVEPNPVGQLQEACMTRKWPP 183
N A +L +I + ++ + F K + N V L C+ +P
Sbjct: 256 VNTAAEMLRSIIRKQKKRTLSSHIRSFNDKELKSISPMIKFKANYVEVLHNECLKHSYPS 315
Query: 184 PVY---ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
P+Y + P R C +++ G ++ AK+ AA N++K E +
Sbjct: 316 PLYTLLSQPKNDDKPENRYSIQCNAMDLV-AIGHSNNQSTAKQMAAQNIMKLWEKL 370
>gi|328719338|ref|XP_003246734.1| PREDICTED: hypothetical protein LOC100572224 isoform 2
[Acyrthosiphon pisum]
gi|328719340|ref|XP_003246735.1| PREDICTED: hypothetical protein LOC100572224 isoform 3
[Acyrthosiphon pisum]
Length = 378
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 20/176 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
R+P+ L++ + G P Y ++ + + ++ Y +L +YV GSG +K EAK
Sbjct: 200 RSPMELLRNRIVDHGIIPIYRFLRRNTSGQQFVYSYSCTLFG---MYVE-GSGTTKYEAK 255
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLF------------KVEPNPVGQLQEACMTRKWPP 183
N A +L +I + ++ + F K + N V L C+ +P
Sbjct: 256 VNTAAEMLRSIIRKQKKRTLSSHIRSFNDKELKSISPMIKFKANYVEVLHNECLKHSYPS 315
Query: 184 PVY---ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
P+Y + P R C +++ G ++ AK+ AA N++K E +
Sbjct: 316 PLYTLLSQPKNDDKPENRYSIQCNAMDLV-AIGHSNNQSTAKQMAAQNIMKLWEKL 370
>gi|406929771|gb|EKD65281.1| hypothetical protein ACD_50C00142G0004 [uncultured bacterium]
Length = 220
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 138 AAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHE 197
++K + L+ + DE + QKE L +P LQE +K P+Y+ E +G H+
Sbjct: 128 SSKFINSVLLSKVDE--IIQKETL----KDPKSILQEIVQAKKQKSPIYKVVEESGPAHD 181
Query: 198 RMFTVCAYV--NVYKEEGMGKSKKIAKREAA 226
++FTV A+V N+ +G G+SK+IA+ AA
Sbjct: 182 KLFTVGAFVGENMVG-KGTGRSKQIAEENAA 211
>gi|350606381|ref|NP_957219.2| double-stranded RNA-binding protein Staufen homolog 2 [Danio rerio]
Length = 678
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 144/357 (40%), Gaps = 73/357 (20%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+SL+ E+ +R +E+++ G + F R+++ + A G G SKK +K A
Sbjct: 281 ISLVYEIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGE----FSAEGEGNSKKLSKKRA 336
Query: 139 AKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRKWPPP 184
A S+L +L + + + + + K P NP+ +L + +K P
Sbjct: 337 ALSILQELKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPISRLAQIQQAKKEKEP 396
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVPIE-I 240
Y G+P R F + V G G +KK+AKR AA M L + + P++
Sbjct: 397 EYMLLSERGMPRRREFIMQVKVGTEVTTGTGPNKKVAKRNAAEAMLLQLGYKASTPLQNT 456
Query: 241 PEKKQGEDVDEKGESNGLKHTHDST---------FLTPQILKKIQ------------QYH 279
PEK +D KG NG + T L+P + ++++ +
Sbjct: 457 PEK-----MDNKGW-NGQRAAFPETTSNTQKGILHLSPDVYQEMEASRNKGVPGAPGNFP 510
Query: 280 TV--FSQKTKGPLL------------EKLLSTRN-----LIDEVEDPILYLEDL--SDEL 318
T Q + GP E LLS + L+ + + P L + S +L
Sbjct: 511 TAKEIGQGSAGPFCTPSVGNTATIAKELLLSGTSPTAEALVLKGKAPALACGSIQPSQQL 570
Query: 319 KY--RVSFVDIEEKSKADGFQSLLQLTTTPVTV-FCGTGASIEVAKIEAVYRALDFL 372
+Y + ++ + + + LT +PV + F G G+SI + +A AL L
Sbjct: 571 EYLAHIQGFQVQYSDRQTDKEFMTYLTLSPVQMTFHGIGSSIPASHDQAALSALKQL 627
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRD--DEKLMCQKE--------NLFKVEPNPVGQLQE 174
IG G++++ A+HNAA L L + C +E + K E + + E
Sbjct: 230 IGEGRTRQAARHNAAMKALQALKNEPIPERPPQCSEEKKETEENSDASKSE---ISLVYE 286
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AAL++L+ L+
Sbjct: 287 IALKRNLPV-NFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAALSILQELK 345
Query: 235 TVPI 238
+P+
Sbjct: 346 KLPV 349
>gi|357601727|gb|EHJ63133.1| staufen [Danaus plexippus]
Length = 450
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG----RDDEKLMCQKENLFKVE- 165
YR+ +T R +V G G + + A+H+AA L L +D++ +N+ +
Sbjct: 8 YRVRVTVGGRSWV--GEGATPQGARHDAAARALHDLRSVAEHQDNDSGDAGSDNMLNSDV 65
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+PV + E + R + + G PH R+F V + EG G KKI+KR A
Sbjct: 66 KSPVSLVHELALKRDLSV-QFTVKSERGPPHMRVFVTLCTVGEMETEGEGNGKKISKRRA 124
Query: 226 ALNMLK 231
A ML+
Sbjct: 125 AERMLE 130
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 133/356 (37%), Gaps = 81/356 (22%)
Query: 71 LNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS 130
LN+ ++PVSL+ EL +R + ++ + G P + ++L + + G G
Sbjct: 61 LNSDVKSPVSLVHELALKRDLSVQFTVKSERG---PPHMRVFVTLCTVGEMETE-GEGNG 116
Query: 131 KKEAKHNAAKSVLDQ------------------------------LIGRDDEKLMCQKEN 160
KK +K AA+ +L++ LI E+ C K N
Sbjct: 117 KKISKRRAAERMLEEMRRRWPPALLRTRPPTDRRRHPPAKKKPRNLIKEGGEEAGCAKSN 176
Query: 161 -----LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
NP+ +L A + P Y E G+ R F V + G+G
Sbjct: 177 NGTPASSGGSDNPISRLAVARNAARARSPQYRVLEERGVARRREFLVQCDAPPHSATGLG 236
Query: 216 KSKKIAKREAALNMLKFLE------TVPIEIPEKKQGEDVDEKGESNG-----LKHTHDS 264
+KK AKR AA N+L +E T+ I + G D D K ++G + +S
Sbjct: 237 PNKKTAKRRAAHNVLLAMELSASGDTMNSSI--QSNGGD-DTKSAADGKRKEDMNGGANS 293
Query: 265 TFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLI----------------------- 301
P + YHT + + + +T N +
Sbjct: 294 EVRQPVPGVILMDYHTRSGHPPQPNGVSESSATGNGVPVGAESVPAAVPVPAGGVPGATN 353
Query: 302 -DEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGAS 356
+D ++YL L L + V F D +++ + + SL+ L+T P + G GAS
Sbjct: 354 TPGAKDQLMYLAQL---LGFTVQFSDFPKRNHGE-YLSLVSLSTEPPVMCHGGGAS 405
>gi|391325759|ref|XP_003737395.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog [Metaseiulus
occidentalis]
Length = 240
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV 208
PNP+G+LQE C+ R W P Y+ E TG PH F + CA N+
Sbjct: 56 PNPIGELQELCVQRHWALPEYKEEFRTGPPHVSTFVMTCAVQNL 99
>gi|82469802|gb|ABB77159.1| R2D2 [Drosophila lucipennis]
Length = 299
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL--------IGRDDE----KLMCQKENLFKVEPNPVGQ 171
+ G+G+SK++AKH AA ++L ++ + D E +C E L + + + +
Sbjct: 31 SYGNGRSKRDAKHLAAANILRKIRKLPGVSGLLEDSEANSMNDLC--EELTNLNRDMLKE 88
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
L++ C+ P P E + +G P+ F C V G KK A++ AA+ ML
Sbjct: 89 LRDYCVRHDMPLPSIEIVQQSGTPNAPEFVACCTVASIVRYGKSDKKKDARQRAAIEMLA 148
Query: 232 FLETVPIEI-PEKKQ 245
+ ++ P+K Q
Sbjct: 149 IISNEADDLRPDKMQ 163
>gi|406903549|gb|EKD45592.1| hypothetical protein ACD_69C00217G0003 [uncultured bacterium]
Length = 224
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEE-GMGKSKKIA 221
V+ +P LQE RK P P Y T+G H ++FTV C + + G+G +K++A
Sbjct: 148 VQKDPKTSLQELLQMRKSPLPTYVVTNTSGAAHSQIFTVECRVAGLCEASVGVGSNKRVA 207
Query: 222 KREAALNMLKFLE 234
+R+AA ML +E
Sbjct: 208 ERDAAEKMLAKIE 220
>gi|374675328|gb|AEZ56897.1| double-stranded RNA-binding protein Staufen-like protein, partial
[Branchiostoma belcheri]
Length = 224
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 37/196 (18%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAIN---EPIFKYR----------------IS 114
G TP + L RRG Y I + I P + +R +S
Sbjct: 15 GSITPTVELNGLAMRRGEPAIYRPIDPKPTIPPQYRPNYNFRGIYNQRYHYPTPKTFYVS 74
Query: 115 LTSESRLYVAIGSGKSKKEAKHNAAKSVL----DQLIGRDDEKLMC--------QKENLF 162
LT +R + IG G+++++A+HNAA L D+ I E + + ENL
Sbjct: 75 LTIGNREF--IGEGRTRQQARHNAAAKALKVLKDEPIPETTEPVQPAADVLANEKAENLL 132
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
K E + + E R +E + +G PH + F V + EG G +K++K
Sbjct: 133 KPE---ITLVYEIARKRNM-SVSFEVIKESGPPHMKTFVTSCKVGDFVAEGEGNGRKVSK 188
Query: 223 REAALNMLKFLETVPI 238
+ AA +L+ L+ +P+
Sbjct: 189 KRAAQKVLEQLKVLPL 204
>gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis]
gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis]
Length = 342
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVG----------Q 171
+VA GS + K+ AK NAAK L +L LM F+ +G +
Sbjct: 215 FVASGSSEQKETAKLNAAKGALQKL-----SHLMPSNLGHFEDVLKTIGGSFEIEGAKRK 269
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
L E C +KWP P Y E+ TG HE+ + VC+
Sbjct: 270 LHELCGKKKWPKPTYNIEKETGPSHEKKY-VCS 301
>gi|328726529|ref|XP_003248935.1| PREDICTED: hypothetical protein LOC100572502 [Acyrthosiphon pisum]
Length = 378
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 18/175 (10%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
R+P+ +++ + G P Y ++ + + ++ Y +L +YV GSG SK EAK
Sbjct: 200 RSPMEMLRNRIVDHGIIPIYRFLKRNTSGQQFVYNYSCTLFG---MYVE-GSGTSKYEAK 255
Query: 136 HNAAKSVLDQLIGRDDEKLMC-------QKE-----NLFKVEPNPVGQLQEACMTRKWPP 183
N A +L +I + + + KE + K + N V L C+ P
Sbjct: 256 VNTAAEMLRSIIRKQKNRTLSPHIRSINDKELKSIGQMIKFKANYVEVLHNVCLNHSHLP 315
Query: 184 PVYE--TEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
P+Y ++ G E +++ G ++ AK+ AA N++K E +
Sbjct: 316 PIYTLLSQPKNGDKPENHYSIQCNAMGLVAIGHSNNQSTAKQMAAQNIMKLWEKL 370
>gi|406979999|gb|EKE01673.1| RNase III, dsRNA [uncultured bacterium]
Length = 223
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEE-GMGKSKKIA 221
+ +P LQE RK P P Y TTG+ H ++FT+ CA V + G+G +K+ A
Sbjct: 148 AQKDPKTLLQELLQMRKIPLPAYTVVSTTGVSHSQVFTIKCAVSGVDEAAIGIGPNKRRA 207
Query: 222 KREAALNMLKFLE 234
+R+AA ML +E
Sbjct: 208 ERDAAEKMLARIE 220
>gi|260785891|ref|XP_002587993.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae]
gi|229273149|gb|EEN44004.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae]
Length = 376
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 42/222 (18%)
Query: 53 VSTNNLPLEEAARLEVMRLNTGDR-----TPVSLMQELLSRRGTAPKYELIQIEGAIN-- 105
+ T NLP + L GD TP + L RRG Y I + I
Sbjct: 137 LDTCNLPWPKPKPPRNQELTDGDVPVGSITPTVELNGLAMRRGEPAIYRPIDPKPTIPPQ 196
Query: 106 -EPIFKYR----------------ISLTSESRLYVAIGSGKSKKEAKHNAAKSVL----D 144
P + +R +SLT +R + IG G+++++A+HNAA L D
Sbjct: 197 YRPNYNFRGIYNQRYHYPTPKTFYVSLTIGNREF--IGEGRTRQQARHNAAAKALKVLKD 254
Query: 145 QLIGRDDEK-------LMCQK-ENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPH 196
+ I + L +K ENL K E + + E R +E + +G PH
Sbjct: 255 EPIPETTDPPQPAPDVLANEKAENLLKPE---ITLVYEIARKRNMSV-SFEVVKESGPPH 310
Query: 197 ERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+ F V + EG G KK++K+ AA +L+ L+ +P+
Sbjct: 311 MKTFVTSCKVGDFVAEGEGNGKKVSKKRAAQKVLEQLKVLPL 352
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+LI G ++ F ISLT + + A GS S
Sbjct: 70 NPKEKTPMCLINELARYNKIQPQYKLITETGPAHQKTFT--ISLTLNDKTWSAEGS--SL 125
Query: 132 KEAKHNAAKSVLD 144
K+A+H AA LD
Sbjct: 126 KKAQHAAASKALD 138
>gi|402594243|gb|EJW88169.1| hypothetical protein WUBG_00921 [Wuchereria bancrofti]
Length = 390
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 116/288 (40%), Gaps = 51/288 (17%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLI----------GRDDEKLMCQKENLF-----------K 163
+G G++KK AK AAK +L ++I G+ E+ + ENL
Sbjct: 77 VGYGRTKKIAKQMAAKDMLKKMIEKESFSDFGLGKTKEEALANLENLTIDFQNRGSTDDS 136
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
V N VG++ E C K YE +E G ++R+F V GK+KKIAK
Sbjct: 137 VIENWVGKVNERCQKLKLLNATYEIDE-EGPTNQRIFIATCTVGKIHVVAHGKTKKIAKT 195
Query: 224 EAALNMLKFLET---VPIEI------PEKKQGEDVDEKGES--NGLKHTHDSTFLTPQIL 272
AA M LE + ++ P ++ ES N L + + P L
Sbjct: 196 LAAQKMCAQLENWKDLAYDVENAMFPPAAAASQETTSSNESAANNLPPSVSGDAVMP--L 253
Query: 273 KKIQQYHTVFSQKTKGP--LLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEK 330
+ +Q+ VF Q G L +KL N DE + I L ++ FV +E
Sbjct: 254 QSLQKVRAVF-QNGNGTQDLTKKLTELINSGDENINKIF--------LNQKLKFVFLE-- 302
Query: 331 SKADG-FQSLLQLT--TTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
DG Q +L + F G GA+ E AK A AL L++
Sbjct: 303 PDLDGNLQCMLSINGPNDMKNAFYGFGATEEDAKNYAARIALIHLELF 350
>gi|167555192|ref|NP_001107942.1| interferon-induced, double-stranded RNA-activated protein kinase
[Danio rerio]
gi|163879058|gb|ABY47905.1| IFN-stimulated dsRNA-activated eIF2-alpha kinase 2 [Danio rerio]
gi|164508750|emb|CAM07150.1| double-stranded RNA activated protein kinase [Danio rerio]
Length = 682
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 126 GSGKSKKEAKHNAAKSVLDQLIG-RDDEKLMCQKENL----FKVEPNPVGQLQEACMTRK 180
G+GK+KKEAK NAAK+ L+ L DE EN+ PN L E +
Sbjct: 53 GTGKTKKEAKQNAAKNALEGLKSTHSDEPTPSPVENISVSKIASHPNYTCWLNEHSQKSR 112
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVY----KE--EGMGKSKKIAKREAALNMLKFLE 234
+++ E+T + + +C YV Y KE EG GK+KK AK AAL + + L
Sbjct: 113 L---MFKACESTKMDPGNLTRLCTYVCKYVCDDKEFPEGYGKNKKEAKEAAALRVYEELN 169
Query: 235 TVP 237
P
Sbjct: 170 KTP 172
>gi|189236895|ref|XP_967977.2| PREDICTED: C3PO protein [Tribolium castaneum]
Length = 3759
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
Query: 76 RTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+TP+SL+QEL++ RG + P Y E F T ++ A G G SKK A
Sbjct: 4 KTPISLLQELMAARGISLPVYI---------EEGFGTSFKCTVKAGGVTACGYGTSKKNA 54
Query: 135 KHNAAKSVLDQLIGRDDE---KLMCQKENLFKVEPNPVGQLQEACMTR 179
KH +AK+ L +L D K + NLF+ N VG+L E +R
Sbjct: 55 KHESAKNALVKLRREDKSPEIKPRAENNNLFR---NFVGELNEYAASR 99
>gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580]
Length = 231
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 155 MCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY--KEE 212
+ +K N ++ +P LQE +K P P YE G H ++FTV V+ + K E
Sbjct: 143 LIEKINPKEIYKDPKTILQEFLQAQKVPLPSYEVINVEGEAHNQLFTVTCVVSKFDVKVE 202
Query: 213 GMGKSKKIAKREAA 226
G G+S+KIA++EAA
Sbjct: 203 GGGRSRKIAEQEAA 216
>gi|213158242|ref|YP_002320293.1| ribonuclease III, partial [Acinetobacter baumannii AB0057]
gi|215482645|ref|YP_002324839.1| ribonuclease 3, partial [Acinetobacter baumannii AB307-0294]
gi|384132810|ref|YP_005515422.1| rnc, partial [Acinetobacter baumannii 1656-2]
gi|385238511|ref|YP_005799850.1| ribonuclease III, partial [Acinetobacter baumannii TCDC-AB0715]
gi|416145059|ref|ZP_11600176.1| ribonuclease III [Acinetobacter baumannii AB210]
gi|417544401|ref|ZP_12195487.1| ribonuclease III [Acinetobacter baumannii OIFC032]
gi|417549048|ref|ZP_12200128.1| ribonuclease III [Acinetobacter baumannii Naval-18]
gi|417554526|ref|ZP_12205595.1| ribonuclease III [Acinetobacter baumannii Naval-81]
gi|417572304|ref|ZP_12223158.1| ribonuclease III [Acinetobacter baumannii Canada BC-5]
gi|421198463|ref|ZP_15655628.1| ribonuclease III [Acinetobacter baumannii OIFC109]
gi|421454540|ref|ZP_15903887.1| ribonuclease III [Acinetobacter baumannii IS-123]
gi|421623203|ref|ZP_16064092.1| ribonuclease III [Acinetobacter baumannii OIFC074]
gi|421626534|ref|ZP_16067363.1| ribonuclease III [Acinetobacter baumannii OIFC098]
gi|421628270|ref|ZP_16069055.1| ribonuclease III [Acinetobacter baumannii OIFC180]
gi|421631919|ref|ZP_16072582.1| ribonuclease III [Acinetobacter baumannii Naval-13]
gi|421643947|ref|ZP_16084435.1| ribonuclease III [Acinetobacter baumannii IS-235]
gi|421647501|ref|ZP_16087918.1| ribonuclease III [Acinetobacter baumannii IS-251]
gi|421649568|ref|ZP_16089959.1| ribonuclease III [Acinetobacter baumannii OIFC0162]
gi|421655492|ref|ZP_16095815.1| ribonuclease III [Acinetobacter baumannii Naval-72]
gi|421660878|ref|ZP_16101060.1| ribonuclease III [Acinetobacter baumannii Naval-83]
gi|421664204|ref|ZP_16104344.1| ribonuclease III [Acinetobacter baumannii OIFC110]
gi|421666666|ref|ZP_16106754.1| ribonuclease III [Acinetobacter baumannii OIFC087]
gi|421673250|ref|ZP_16113194.1| ribonuclease III [Acinetobacter baumannii OIFC065]
gi|421677833|ref|ZP_16117722.1| ribonuclease III [Acinetobacter baumannii OIFC111]
gi|421689601|ref|ZP_16129281.1| ribonuclease III [Acinetobacter baumannii IS-143]
gi|421689993|ref|ZP_16129666.1| ribonuclease III [Acinetobacter baumannii IS-116]
gi|421695425|ref|ZP_16135032.1| ribonuclease III [Acinetobacter baumannii WC-692]
gi|421700770|ref|ZP_16140283.1| ribonuclease III [Acinetobacter baumannii IS-58]
gi|421788830|ref|ZP_16225104.1| ribonuclease III [Acinetobacter baumannii Naval-82]
gi|421791391|ref|ZP_16227568.1| ribonuclease III [Acinetobacter baumannii Naval-2]
gi|421794909|ref|ZP_16231000.1| ribonuclease III [Acinetobacter baumannii Naval-21]
gi|421801965|ref|ZP_16237919.1| ribonuclease III [Acinetobacter baumannii Canada BC1]
gi|421806115|ref|ZP_16241988.1| ribonuclease III [Acinetobacter baumannii WC-A-694]
gi|421806963|ref|ZP_16242825.1| ribonuclease III [Acinetobacter baumannii OIFC035]
gi|425750312|ref|ZP_18868279.1| ribonuclease III [Acinetobacter baumannii WC-348]
gi|425754449|ref|ZP_18872311.1| ribonuclease III [Acinetobacter baumannii Naval-113]
gi|445405908|ref|ZP_21431503.1| ribonuclease III [Acinetobacter baumannii Naval-57]
gi|445447132|ref|ZP_21443619.1| ribonuclease III [Acinetobacter baumannii WC-A-92]
gi|445459920|ref|ZP_21447829.1| ribonuclease III [Acinetobacter baumannii OIFC047]
gi|445472386|ref|ZP_21452465.1| ribonuclease III [Acinetobacter baumannii OIFC338]
gi|445477145|ref|ZP_21454120.1| ribonuclease III [Acinetobacter baumannii Naval-78]
gi|445490534|ref|ZP_21459247.1| ribonuclease III [Acinetobacter baumannii AA-014]
gi|213057402|gb|ACJ42304.1| ribonuclease III [Acinetobacter baumannii AB0057]
gi|213986369|gb|ACJ56668.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294]
gi|322509030|gb|ADX04484.1| rnc [Acinetobacter baumannii 1656-2]
gi|323519012|gb|ADX93393.1| ribonuclease III [Acinetobacter baumannii TCDC-AB0715]
gi|333367175|gb|EGK49189.1| ribonuclease III [Acinetobacter baumannii AB210]
gi|395565359|gb|EJG27006.1| ribonuclease III [Acinetobacter baumannii OIFC109]
gi|400207872|gb|EJO38842.1| ribonuclease III [Acinetobacter baumannii Canada BC-5]
gi|400212330|gb|EJO43289.1| ribonuclease III [Acinetobacter baumannii IS-123]
gi|400382289|gb|EJP40967.1| ribonuclease III [Acinetobacter baumannii OIFC032]
gi|400387016|gb|EJP50089.1| ribonuclease III [Acinetobacter baumannii Naval-18]
gi|400390943|gb|EJP57990.1| ribonuclease III [Acinetobacter baumannii Naval-81]
gi|404557767|gb|EKA63062.1| ribonuclease III [Acinetobacter baumannii IS-143]
gi|404565497|gb|EKA70665.1| ribonuclease III [Acinetobacter baumannii IS-116]
gi|404565756|gb|EKA70919.1| ribonuclease III [Acinetobacter baumannii WC-692]
gi|404569421|gb|EKA74508.1| ribonuclease III [Acinetobacter baumannii IS-58]
gi|408506622|gb|EKK08328.1| ribonuclease III [Acinetobacter baumannii IS-235]
gi|408508817|gb|EKK10496.1| ribonuclease III [Acinetobacter baumannii Naval-72]
gi|408513572|gb|EKK15190.1| ribonuclease III [Acinetobacter baumannii OIFC0162]
gi|408516606|gb|EKK18179.1| ribonuclease III [Acinetobacter baumannii IS-251]
gi|408693812|gb|EKL39410.1| ribonuclease III [Acinetobacter baumannii OIFC074]
gi|408695805|gb|EKL41360.1| ribonuclease III [Acinetobacter baumannii OIFC098]
gi|408703487|gb|EKL48882.1| ribonuclease III [Acinetobacter baumannii Naval-83]
gi|408708309|gb|EKL53586.1| ribonuclease III [Acinetobacter baumannii OIFC180]
gi|408710465|gb|EKL55691.1| ribonuclease III [Acinetobacter baumannii Naval-13]
gi|408712501|gb|EKL57684.1| ribonuclease III [Acinetobacter baumannii OIFC110]
gi|410387069|gb|EKP39529.1| ribonuclease III [Acinetobacter baumannii OIFC065]
gi|410387368|gb|EKP39823.1| ribonuclease III [Acinetobacter baumannii OIFC087]
gi|410392714|gb|EKP45071.1| ribonuclease III [Acinetobacter baumannii OIFC111]
gi|410400794|gb|EKP52960.1| ribonuclease III [Acinetobacter baumannii Naval-82]
gi|410402846|gb|EKP54951.1| ribonuclease III [Acinetobacter baumannii Naval-21]
gi|410403428|gb|EKP55525.1| ribonuclease III [Acinetobacter baumannii Naval-2]
gi|410404353|gb|EKP56420.1| ribonuclease III [Acinetobacter baumannii Canada BC1]
gi|410407589|gb|EKP59573.1| ribonuclease III [Acinetobacter baumannii WC-A-694]
gi|410417506|gb|EKP69276.1| ribonuclease III [Acinetobacter baumannii OIFC035]
gi|425487714|gb|EKU54072.1| ribonuclease III [Acinetobacter baumannii WC-348]
gi|425496945|gb|EKU63059.1| ribonuclease III [Acinetobacter baumannii Naval-113]
gi|444759360|gb|ELW83830.1| ribonuclease III [Acinetobacter baumannii WC-A-92]
gi|444765797|gb|ELW90086.1| ribonuclease III [Acinetobacter baumannii AA-014]
gi|444770051|gb|ELW94209.1| ribonuclease III [Acinetobacter baumannii OIFC338]
gi|444773155|gb|ELW97251.1| ribonuclease III [Acinetobacter baumannii OIFC047]
gi|444776652|gb|ELX00690.1| ribonuclease III [Acinetobacter baumannii Naval-78]
gi|444781686|gb|ELX05601.1| ribonuclease III [Acinetobacter baumannii Naval-57]
Length = 155
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 86 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAA 145
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 146 AAEILKLLE 154
>gi|82469806|gb|ABB77161.1| R2D2 [Drosophila orosa]
Length = 304
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL-----IG--------RDDEKLMCQKENLFKVEPNPVG 170
+ G+G+SK++AKH AA ++L ++ +G + + + + + + + +
Sbjct: 30 SFGNGRSKRDAKHLAAANILRKIRKLPAVGSLLADLEFNESDGIGELADEMTNLNRDMLK 89
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
+L++ C+ + P P+ E + +G P+ F C V G KK A++ AA++ML
Sbjct: 90 ELRDYCVRNEMPLPIIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAAIDML 149
Query: 231 KFL 233
+
Sbjct: 150 AVI 152
>gi|321468486|gb|EFX79471.1| hypothetical protein DAPPUDRAFT_244860 [Daphnia pulex]
Length = 118
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 152 EKLMCQKENLFK--VEP--NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN 207
EKL KE++ K EP NP G L E +TR P Y +G H + + + ++
Sbjct: 28 EKLGTLKEDIPKPPTEPTLNPSGVLSEWRLTRHSTLPEYRVVRKSGPSHSKTYFMTCKLS 87
Query: 208 VYKEEGMGKSKKIAKREAALNMLKFLE 234
EG+GKSKK AK +AA ML+ LE
Sbjct: 88 ERVTEGVGKSKKAAKNDAAQKMLQILE 114
>gi|87118656|ref|ZP_01074555.1| ribonuclease III [Marinomonas sp. MED121]
gi|86166290|gb|EAQ67556.1| ribonuclease III [Marinomonas sp. MED121]
Length = 217
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKKIAKREAALN 228
+LQE RK P YE E G PH++ F V + ++ + EG G S++IA+++AA
Sbjct: 147 RLQEFLQARKHALPQYEVTEVLGEPHDQTFYVHCVIELFADPIEGKGNSRRIAEQKAATQ 206
Query: 229 MLKFLE 234
L LE
Sbjct: 207 ALAMLE 212
>gi|85719268|ref|YP_460036.1| VP11 [Liao ning virus]
gi|56785927|gb|AAW29094.1| VP11 [Liao ning virus]
Length = 198
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
N VG +QE + P YE G PH R FT+ A K EG+G SKK+A+ AA
Sbjct: 9 NAVGLMQEYAIKLSESAPSYEDVGFEGPPHNRSFTISATFRDKKYEGIGPSKKVARSVAA 68
Query: 227 LNML 230
+L
Sbjct: 69 NKIL 72
>gi|299769157|ref|YP_003731183.1| ribonuclease III [Acinetobacter oleivorans DR1]
gi|298699245|gb|ADI89810.1| ribonuclease III [Acinetobacter oleivorans DR1]
Length = 230
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLIDGLSKIHGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>gi|381393604|ref|ZP_09919325.1| ribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379330820|dbj|GAB54458.1| ribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 224
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKIAKREAALN 228
QLQE +R+ P Y+ + G H +MFTV V+ K + G GKS++IA++EAA
Sbjct: 158 QLQEYLQSRQLDLPDYKVTDIKGKDHAQMFTVKCNVHALKIHKTGAGKSRRIAEQEAA-- 215
Query: 229 MLKFLETVPI 238
K LE +P+
Sbjct: 216 -KKILEALPL 224
>gi|184159116|ref|YP_001847455.1| ribonuclease III [Acinetobacter baumannii ACICU]
gi|417559784|ref|ZP_12210663.1| ribonuclease III [Acinetobacter baumannii OIFC137]
gi|417565517|ref|ZP_12216391.1| ribonuclease III [Acinetobacter baumannii OIFC143]
gi|417569770|ref|ZP_12220628.1| ribonuclease III [Acinetobacter baumannii OIFC189]
gi|417575567|ref|ZP_12226415.1| ribonuclease III [Acinetobacter baumannii Naval-17]
gi|183210710|gb|ACC58108.1| dsRNA-specific ribonuclease [Acinetobacter baumannii ACICU]
gi|395522366|gb|EJG10455.1| ribonuclease III [Acinetobacter baumannii OIFC137]
gi|395553993|gb|EJG19999.1| ribonuclease III [Acinetobacter baumannii OIFC189]
gi|395557273|gb|EJG23274.1| ribonuclease III [Acinetobacter baumannii OIFC143]
gi|395571056|gb|EJG31715.1| ribonuclease III [Acinetobacter baumannii Naval-17]
Length = 234
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 165 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAA 224
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 225 AAEILKLLE 233
>gi|149374709|ref|ZP_01892483.1| ribonuclease III [Marinobacter algicola DG893]
gi|149361412|gb|EDM49862.1| ribonuclease III [Marinobacter algicola DG893]
Length = 229
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 157 QKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGM 214
QK +L + +P +LQE +R++P P Y+ G H + F V CA ++ K G
Sbjct: 146 QKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDVISVDGEAHAQTFHVSCALPSLDRKTTGT 205
Query: 215 GKSKKIAKREAALNMLKFL 233
G S++IA+++AA N LK L
Sbjct: 206 GNSRRIAEQQAARNALKQL 224
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 65 RLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RL+ + L + P + +QE L SR+ P+Y++I ++G + F +L S R
Sbjct: 144 RLQKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDVISVDGEAHAQTFHVSCALPSLDR--K 201
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL 146
G+G S++ A+ AA++ L QL
Sbjct: 202 TTGTGNSRRIAEQQAARNALKQL 224
>gi|169795096|ref|YP_001712889.1| ribonuclease III [Acinetobacter baumannii AYE]
gi|239501066|ref|ZP_04660376.1| ribonuclease III [Acinetobacter baumannii AB900]
gi|260556582|ref|ZP_05828800.1| ribonuclease III [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|301345824|ref|ZP_07226565.1| ribonuclease III [Acinetobacter baumannii AB056]
gi|301512403|ref|ZP_07237640.1| ribonuclease III [Acinetobacter baumannii AB058]
gi|301594764|ref|ZP_07239772.1| ribonuclease III [Acinetobacter baumannii AB059]
gi|332851055|ref|ZP_08433164.1| ribonuclease III [Acinetobacter baumannii 6013150]
gi|332869696|ref|ZP_08438884.1| ribonuclease III [Acinetobacter baumannii 6013113]
gi|332875945|ref|ZP_08443731.1| ribonuclease III [Acinetobacter baumannii 6014059]
gi|384144225|ref|YP_005526935.1| dsRNA-specific ribonuclease [Acinetobacter baumannii MDR-ZJ06]
gi|387122954|ref|YP_006288836.1| ribonuclease III [Acinetobacter baumannii MDR-TJ]
gi|403675441|ref|ZP_10937606.1| ribonuclease III [Acinetobacter sp. NCTC 10304]
gi|407933705|ref|YP_006849348.1| ribonuclease III [Acinetobacter baumannii TYTH-1]
gi|417870356|ref|ZP_12515322.1| ribonuclease III [Acinetobacter baumannii ABNIH1]
gi|417874396|ref|ZP_12519249.1| ribonuclease III [Acinetobacter baumannii ABNIH2]
gi|417877597|ref|ZP_12522288.1| ribonuclease III [Acinetobacter baumannii ABNIH3]
gi|417881773|ref|ZP_12526083.1| ribonuclease III [Acinetobacter baumannii ABNIH4]
gi|421203557|ref|ZP_15660694.1| ribonuclease III [Acinetobacter baumannii AC12]
gi|421533521|ref|ZP_15979804.1| ribonuclease III [Acinetobacter baumannii AC30]
gi|421704387|ref|ZP_16143832.1| ribonuclease III [Acinetobacter baumannii ZWS1122]
gi|421708165|ref|ZP_16147544.1| ribonuclease III [Acinetobacter baumannii ZWS1219]
gi|424051451|ref|ZP_17788983.1| ribonuclease 3 [Acinetobacter baumannii Ab11111]
gi|424059032|ref|ZP_17796523.1| ribonuclease 3 [Acinetobacter baumannii Ab33333]
gi|424062490|ref|ZP_17799976.1| ribonuclease 3 [Acinetobacter baumannii Ab44444]
gi|238685526|sp|A3M7P2.2|RNC_ACIBT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238688097|sp|B0VCU0.1|RNC_ACIBY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|384955634|sp|B7GYT0.2|RNC_ACIB3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|169148023|emb|CAM85886.1| ribonuclease III, ds RNA [Acinetobacter baumannii AYE]
gi|193078016|gb|ABO12936.2| ribonuclease III [Acinetobacter baumannii ATCC 17978]
gi|260409841|gb|EEX03141.1| ribonuclease III [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|332730219|gb|EGJ61544.1| ribonuclease III [Acinetobacter baumannii 6013150]
gi|332732598|gb|EGJ63831.1| ribonuclease III [Acinetobacter baumannii 6013113]
gi|332735811|gb|EGJ66852.1| ribonuclease III [Acinetobacter baumannii 6014059]
gi|342228043|gb|EGT92948.1| ribonuclease III [Acinetobacter baumannii ABNIH1]
gi|342229118|gb|EGT93988.1| ribonuclease III [Acinetobacter baumannii ABNIH2]
gi|342235314|gb|EGT99921.1| ribonuclease III [Acinetobacter baumannii ABNIH3]
gi|342238528|gb|EGU02959.1| ribonuclease III [Acinetobacter baumannii ABNIH4]
gi|347594718|gb|AEP07439.1| dsRNA-specific ribonuclease [Acinetobacter baumannii MDR-ZJ06]
gi|385877446|gb|AFI94541.1| ribonuclease III [Acinetobacter baumannii MDR-TJ]
gi|398326931|gb|EJN43072.1| ribonuclease III [Acinetobacter baumannii AC12]
gi|404665007|gb|EKB32970.1| ribonuclease 3 [Acinetobacter baumannii Ab11111]
gi|404669770|gb|EKB37662.1| ribonuclease 3 [Acinetobacter baumannii Ab33333]
gi|404671442|gb|EKB39285.1| ribonuclease 3 [Acinetobacter baumannii Ab44444]
gi|407190221|gb|EKE61440.1| ribonuclease III [Acinetobacter baumannii ZWS1122]
gi|407190778|gb|EKE61993.1| ribonuclease III [Acinetobacter baumannii ZWS1219]
gi|407902286|gb|AFU39117.1| ribonuclease III [Acinetobacter baumannii TYTH-1]
gi|409988521|gb|EKO44691.1| ribonuclease III [Acinetobacter baumannii AC30]
gi|452947998|gb|EME53479.1| ribonuclease III [Acinetobacter baumannii MSP4-16]
Length = 230
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>gi|373456823|ref|ZP_09548590.1| Ribonuclease 3 [Caldithrix abyssi DSM 13497]
gi|371718487|gb|EHO40258.1| Ribonuclease 3 [Caldithrix abyssi DSM 13497]
Length = 264
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 138 AAKSVLDQLIGRDDEKLMCQKENLFKVE--PNPVGQLQEACMTRKWPPPVYETEETTGLP 195
AA++ ++ I R ++E+L KV+ N +L E ++ W PVY+ +G
Sbjct: 154 AARNFVNHFILR-------KREDLLKVKRYHNYKSELLEKAQSKGWGNPVYQIVHESGPD 206
Query: 196 HERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNMLKFL 233
H + F V V N + +G+G SKK A++ AA N LK L
Sbjct: 207 HNKQFVVRVNVNNRWLAKGVGSSKKKAEQLAARNALKKL 245
>gi|126642554|ref|YP_001085538.1| ribonuclease III [Acinetobacter baumannii ATCC 17978]
gi|421670649|ref|ZP_16110637.1| ribonuclease III [Acinetobacter baumannii OIFC099]
gi|410384187|gb|EKP36705.1| ribonuclease III [Acinetobacter baumannii OIFC099]
Length = 176
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 107 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAA 166
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 167 AAEILKLLE 175
>gi|270006021|gb|EFA02469.1| hypothetical protein TcasGA2_TC008157 [Tribolium castaneum]
Length = 480
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 126 GSGKSKKEAKHNAAKSVL----------DQLIGRDDEKLMCQKENLFKVEPNPVGQLQEA 175
G G++ + A+H+AA L D + R+D C+K L +P+ ++ EA
Sbjct: 182 GFGQTIQAARHDAASKALKDMEKRALLKDHVCSREDSVEDCKK--LKDDLKSPITRVHEA 239
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
E+ G PH+R F + Y EG G+SKK +KR AA ML+FL
Sbjct: 240 AQLNNLALEFNVISES-GKPHQRNFVTECKLGDYVTEGEGRSKKESKRVAAEKMLQFL 296
>gi|424745797|ref|ZP_18174058.1| ribonuclease III [Acinetobacter baumannii WC-141]
gi|422941986|gb|EKU37049.1| ribonuclease III [Acinetobacter baumannii WC-141]
Length = 176
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 107 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLIDGLSKIHGEGSSRRFAEQAA 166
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 167 AAEILKLLE 175
>gi|169632753|ref|YP_001706489.1| ribonuclease III [Acinetobacter baumannii SDF]
gi|238688259|sp|B0VTM5.1|RNC_ACIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|169151545|emb|CAP00312.1| ribonuclease III, ds RNA [Acinetobacter baumannii]
Length = 230
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>gi|449526605|ref|XP_004170304.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 339
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
D PV+L+ E ++G + + IE E Y + + RL VA GS K K
Sbjct: 174 ADPQPVTLLFEDCQKKG-----KQVHIEN--QEKGSTYVAKVYVDRRL-VASGSSKQKPI 225
Query: 134 AKHNAAKSVLDQLIGRDDEKL-----MCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
A+ NAA+ L L D K+ + + F++E +L + C +KW P Y +
Sbjct: 226 ARLNAAREALIILSDSTDTKIKRVVTIDGIDGSFEIE-GAKQKLHDFCCRKKWQSPSY-S 283
Query: 189 EETTGLPHERMFTVCAYVNVYKEE----GMGKSK-KIAKREAALNMLKFLE 234
+E G PH R F C ++ + + G KS+ K A+ AA M++ L+
Sbjct: 284 KEVLGHPHGRRFVCCVKISTFNDTHSIIGDEKSRVKEAENSAASLMIRDLQ 334
>gi|449459586|ref|XP_004147527.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 353
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
D PV+L+ E ++G + + IE E Y + + RL VA GS K K
Sbjct: 188 ADPQPVTLLFEDCQKKG-----KQVHIEN--QEKGSTYVAKVYVDRRL-VASGSSKQKPI 239
Query: 134 AKHNAAKSVLDQLIGRDDEKL-----MCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
A+ NAA+ L L D K+ + + F++E +L + C +KW P Y +
Sbjct: 240 ARLNAAREALIILSDSTDTKIKRVVTIDGIDGSFEIE-GAKQKLHDFCCRKKWQSPSY-S 297
Query: 189 EETTGLPHERMFTVCAYVNVYKEE----GMGKSK-KIAKREAALNMLKFLE 234
+E G PH R F C ++ + + G KS+ K A+ AA M++ L+
Sbjct: 298 KEVLGHPHGRRFVCCVKISTFNDTHSIIGDEKSRVKEAENSAASLMIRDLQ 348
>gi|189236536|ref|XP_975506.2| PREDICTED: similar to neuron-specific staufen [Tribolium castaneum]
Length = 425
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 126 GSGKSKKEAKHNAAKSVL----------DQLIGRDDEKLMCQKENLFKVEPNPVGQLQEA 175
G G++ + A+H+AA L D + R+D C+K L +P+ ++ EA
Sbjct: 182 GFGQTIQAARHDAASKALKDMEKRALLKDHVCSREDSVEDCKK--LKDDLKSPITRVHEA 239
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
E+ G PH+R F + Y EG G+SKK +KR AA ML+FL
Sbjct: 240 AQLNNLALEFNVISES-GKPHQRNFVTECKLGDYVTEGEGRSKKESKRVAAEKMLQFL 296
>gi|156740401|ref|YP_001430530.1| ribonuclease III [Roseiflexus castenholzii DSM 13941]
gi|254807896|sp|A7NGC5.1|RNC_ROSCS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|156231729|gb|ABU56512.1| Ribonuclease III [Roseiflexus castenholzii DSM 13941]
Length = 234
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 78 PVSLMQELLSR----RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
PV +L +R RG P+Y +I+ G ++P F + ES + G G SK+
Sbjct: 161 PVDYKSKLQARIQAERGITPRYRMIERSGPEHQPEFTFEALAGDES---LGTGRGASKQA 217
Query: 134 AKHNAAKSVLDQLIGRD 150
A+ +AA+ LD+L GRD
Sbjct: 218 AEQDAARDALDRLGGRD 234
>gi|410927952|ref|XP_003977404.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Takifugu rubripes]
Length = 660
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+SL+ E+ ++ +E+++ G + F R+++ + A G G SKK +K A
Sbjct: 281 ISLVYEIALKKNLCVNFEVLKESGPPHMKSFLTRVTVGE----FSAEGEGNSKKLSKKRA 336
Query: 139 AKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRKWPPP 184
A S+L L + + + + + K P NP+ +L + +K P
Sbjct: 337 AISILQDLKKLPLISAVEKPKTHYKKRTKTILKTGPDYGQGMNPISRLAQIQQAKKEKEP 396
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
Y G+P R F + VN G G +KK+AKR AA ML
Sbjct: 397 EYVLLSERGMPRRREFIMQVKVNNEVATGTGPNKKVAKRNAAEAML 442
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 28/203 (13%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ G + IF +++L + V G S
Sbjct: 75 NPKEKTPMCLVNELARFNRIQPQYKLLSERGPAHAKIFSVQLALGEQ----VWEAEGTSI 130
Query: 132 KEAKHN-AAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEE 190
K+A+H+ AAK++ + ++ R + N P +L M R P +Y +
Sbjct: 131 KKAQHSTAAKALEESVLPRPAPRSPKVDINSNPGSITPTVELNGLAMKRGE-PAIYRPLD 189
Query: 191 TTGLPHER-------------------MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+P+ R F V V ++ G G++++ A+ AA+ L+
Sbjct: 190 PKPMPNYRANYNFRGMFNQRYHYPVPKFFYVQLSVGSHEFIGEGRTRQAARHSAAMKALQ 249
Query: 232 FLETVPIEIPEKKQGEDVDEKGE 254
L P IPE+ ++ ++KGE
Sbjct: 250 ALRNEP--IPERPP-QNTEDKGE 269
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 186 YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+E + +G PH + F V + EG G SKK++K+ AA+++L+ L+ +P+
Sbjct: 297 FEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAAISILQDLKKLPL 349
>gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 2 [Macaca mulatta]
Length = 1225
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 612 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 668
Query: 136 HNAAKSVLDQLIGR-------DD--EKLMCQK-ENLFKVEP---------------NPVG 170
AA+ + L G DD E ++ + +NL V P NPVG
Sbjct: 669 QMAAEEAMKALHGEATNSMTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVG 728
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 729 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 787
Query: 230 LKFL 233
L+ L
Sbjct: 788 LRVL 791
>gi|28199176|ref|NP_779490.1| ribonuclease III [Xylella fastidiosa Temecula1]
gi|182681907|ref|YP_001830067.1| ribonuclease III [Xylella fastidiosa M23]
gi|386083215|ref|YP_005999497.1| ribonuclease III [Xylella fastidiosa subsp. fastidiosa GB514]
gi|417557878|ref|ZP_12208884.1| dsRNA-specific ribonuclease [Xylella fastidiosa EB92.1]
gi|32129967|sp|Q87C06.1|RNC_XYLFT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238691044|sp|B2I604.1|RNC_XYLF2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|28057282|gb|AAO29139.1| ribonuclease III [Xylella fastidiosa Temecula1]
gi|182632017|gb|ACB92793.1| Ribonuclease III [Xylella fastidiosa M23]
gi|307578162|gb|ADN62131.1| ribonuclease III [Xylella fastidiosa subsp. fastidiosa GB514]
gi|338179508|gb|EGO82448.1| dsRNA-specific ribonuclease [Xylella fastidiosa EB92.1]
Length = 227
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKI 220
K E +P +LQE R+W PVYE +G PH + F V + K EG G S+++
Sbjct: 151 KPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRL 210
Query: 221 AKREAALNMLKFLET 235
A+++AA + + L++
Sbjct: 211 AEQDAASHAIDQLDS 225
>gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 1 [Macaca mulatta]
Length = 1199
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 612 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 668
Query: 136 HNAAKSVLDQLIGR-------DD--EKLMCQK-ENLFKVEP---------------NPVG 170
AA+ + L G DD E ++ + +NL V P NPVG
Sbjct: 669 QMAAEEAMKALHGEATNSMTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVG 728
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 729 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 787
Query: 230 LKFL 233
L+ L
Sbjct: 788 LRVL 791
>gi|402856392|ref|XP_003892774.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Papio anubis]
Length = 1226
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGR-------DD--EKLMCQK-ENLFKVEP---------------NPVG 170
AA+ + L G DD E ++ + +NL V P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|71274462|ref|ZP_00650750.1| Ribonuclease III [Xylella fastidiosa Dixon]
gi|170730564|ref|YP_001775997.1| ribonuclease III [Xylella fastidiosa M12]
gi|238687923|sp|B0U3D8.1|RNC_XYLFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71164194|gb|EAO13908.1| Ribonuclease III [Xylella fastidiosa Dixon]
gi|71728553|gb|EAO30708.1| Ribonuclease III [Xylella fastidiosa Ann-1]
gi|167965357|gb|ACA12367.1| Ribonuclease III [Xylella fastidiosa M12]
Length = 227
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKI 220
K E +P +LQE R+W PVYE +G PH + F V + K EG G S+++
Sbjct: 151 KPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRL 210
Query: 221 AKREAALNMLKFLET 235
A+++AA + + L++
Sbjct: 211 AEQDAASHAINQLDS 225
>gi|402856394|ref|XP_003892775.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Papio anubis]
Length = 1200
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGR-------DD--EKLMCQK-ENLFKVEP---------------NPVG 170
AA+ + L G DD E ++ + +NL V P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|380786015|gb|AFE64883.1| double-stranded RNA-specific adenosine deaminase isoform d [Macaca
mulatta]
Length = 931
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 374
Query: 136 HNAAKSVLDQLIGR-------DD--EKLMCQK-ENLFKVEP---------------NPVG 170
AA+ + L G DD E ++ + +NL V P NPVG
Sbjct: 375 QMAAEEAMKALHGEATNSMTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVG 434
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 435 GLLEYARSHGFAAE-FKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 493
Query: 230 LKFL 233
L+ L
Sbjct: 494 LRVL 497
>gi|262278196|ref|ZP_06055981.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202]
gi|262258547|gb|EEY77280.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202]
Length = 155
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 86 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLIDGLSKIYGEGSSRRFAEQAA 145
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 146 AAEILKLLE 154
>gi|32129971|sp|Q9PB98.2|RNC_XYLFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 227
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKI 220
K E +P +LQE R+W PVYE +G PH + F V + K EG G S+++
Sbjct: 151 KPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRL 210
Query: 221 AKREAALNMLKFLET 235
A+++AA + + L++
Sbjct: 211 AEQDAASHAIDQLDS 225
>gi|395511009|ref|XP_003759756.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Sarcophilus harrisii]
Length = 594
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 77/177 (43%), Gaps = 22/177 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------N 167
+ A G G SKK +K AA SVL +L + KL +K + + K +P N
Sbjct: 272 FSAEGEGNSKKLSKKRAASSVLQELRKLPPLPVIEKPKLYFRKRPKTILKADPEYGQGMN 331
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PV L + RK P Y G R F + V G+G SKKIAKR AA
Sbjct: 332 PVSCLAQIQQARKEKEPDYALLSDRGKSRRREFLMQVKVGTAVATGIGLSKKIAKRNAAE 391
Query: 228 NMLKFL---ETVPIEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ 276
ML L + P++ +K E+ + G T ++T L+P I ++++
Sbjct: 392 AMLLHLGYKTSTPVQEQLEKTVENKGWNSQKIGFPETTNNTPKGILHLSPDIYQEME 448
>gi|355745704|gb|EHH50329.1| hypothetical protein EGM_01140 [Macaca fascicularis]
Length = 1268
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 655 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 711
Query: 136 HNAAKSVLDQLIGR-------DD--EKLMCQK-ENLFKVEP---------------NPVG 170
AA+ + L G DD E ++ + +NL V P NPVG
Sbjct: 712 QMAAEEAMKALHGEATNSMTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVG 771
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 772 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 830
Query: 230 LKFL 233
L+ L
Sbjct: 831 LRVL 834
>gi|383411201|gb|AFH28814.1| double-stranded RNA-specific adenosine deaminase isoform a [Macaca
mulatta]
Length = 1177
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 564 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 620
Query: 136 HNAAKSVLDQLIGR-------DD--EKLMCQK-ENLFKVEP---------------NPVG 170
AA+ + L G DD E ++ + +NL V P NPVG
Sbjct: 621 QMAAEEAMKALHGEATNSMTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVG 680
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 681 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 739
Query: 230 LKFL 233
L+ L
Sbjct: 740 LRVL 743
>gi|355558514|gb|EHH15294.1| hypothetical protein EGK_01361 [Macaca mulatta]
Length = 1269
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 656 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 712
Query: 136 HNAAKSVLDQLIGR-------DD--EKLMCQK-ENLFKVEP---------------NPVG 170
AA+ + L G DD E ++ + +NL V P NPVG
Sbjct: 713 QMAAEEAMKALHGEATNSMTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVG 772
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 773 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 831
Query: 230 LKFL 233
L+ L
Sbjct: 832 LRVL 835
>gi|384939262|gb|AFI33236.1| double-stranded RNA-specific adenosine deaminase isoform a [Macaca
mulatta]
Length = 1177
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 564 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 620
Query: 136 HNAAKSVLDQLIGR-------DD--EKLMCQK-ENLFKVEP---------------NPVG 170
AA+ + L G DD E ++ + +NL V P NPVG
Sbjct: 621 QMAAEEAMKALHGEATNSMTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVG 680
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 681 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 739
Query: 230 LKFL 233
L+ L
Sbjct: 740 LRVL 743
>gi|427425052|ref|ZP_18915164.1| ribonuclease III [Acinetobacter baumannii WC-136]
gi|425698369|gb|EKU68013.1| ribonuclease III [Acinetobacter baumannii WC-136]
Length = 155
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 86 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAA 145
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 146 AAEILKLLE 154
>gi|15838837|ref|NP_299525.1| ribonuclease III [Xylella fastidiosa 9a5c]
gi|9107400|gb|AAF85045.1|AE004037_6 ribonuclease III [Xylella fastidiosa 9a5c]
Length = 212
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKI 220
K E +P +LQE R+W PVYE +G PH + F V + K EG G S+++
Sbjct: 136 KPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRL 195
Query: 221 AKREAALNMLKFLET 235
A+++AA + + L++
Sbjct: 196 AEQDAASHAIDQLDS 210
>gi|348521876|ref|XP_003448452.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Oreochromis niloticus]
Length = 692
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+ +L + +K P Y GLP R F + V EGMG SKK+AKR AA
Sbjct: 379 NPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVTVCGQSAEGMGPSKKVAKRNAA 438
Query: 227 LNMLKFL 233
ML+ L
Sbjct: 439 EKMLELL 445
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 37/198 (18%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ +G + IF R++L + G S
Sbjct: 67 NPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLTLGDQHWE----AEGTSI 122
Query: 132 KEAKHNAAKSVLDQL------------IGRDDEKLMCQKENL----FKVEPNPVGQLQEA 175
K+A+H+AA S L + G+ +M L K+ P+ + +A
Sbjct: 123 KKAQHSAAASALAETTLPKPTVRTPRSTGKHQADVMTHITELSALCIKLGKKPLYKPIDA 182
Query: 176 CMTRKWPPPVYETEETTGLPHER---------------MFTVCAYVNVYKEEGMGKSKKI 220
+ PP + P++R ++ V + + G G+++++
Sbjct: 183 YTGMR--PPNFNYNVRAPGPYQRSMQQYYYPFPPVGPMLYHVELSIGGQQFFGKGRTRQL 240
Query: 221 AKREAALNMLKFLETVPI 238
AK +AA LK L+ PI
Sbjct: 241 AKHDAAAKALKVLQKEPI 258
>gi|406039703|ref|ZP_11047058.1| ribonuclease III [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 230
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C+ + G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVQCSVAGLPNIVGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois]
gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois]
Length = 222
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
+EPNP LQE + PPVY + +G H +F V V+ K G+SKK+ +
Sbjct: 148 IEPNPKSALQELLQAKGMKPPVYNVIDRSGPAHLPIFEVEICVDGKKRRATGRSKKLGEE 207
Query: 224 EAALNMLKFLET 235
AA ML+ L+
Sbjct: 208 NAARMMLEELKA 219
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 78 PVSLMQELLSRRGTAPK-YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P S +QELL +G P Y +I G + PIF+ I + + R +G+SKK +
Sbjct: 152 PKSALQELLQAKGMKPPVYNVIDRSGPAHLPIFEVEICVDGKKRR----ATGRSKKLGEE 207
Query: 137 NAAKSVLDQL 146
NAA+ +L++L
Sbjct: 208 NAARMMLEEL 217
>gi|156371296|ref|XP_001628700.1| predicted protein [Nematostella vectensis]
gi|156215684|gb|EDO36637.1| predicted protein [Nematostella vectensis]
Length = 423
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D++ +S + E+ +R ++ ++ G + FK + ++ Y+ G G KK+A
Sbjct: 236 DKSEISQVYEIATRMKMMVDFQDMENAGPAHMKKFKIKATVGP----YMTEGEGNRKKDA 291
Query: 135 KHNAAKSVLDQLIG------RDDEKLMCQKENLF---KVEP--------NPVGQLQEACM 177
K AA +L +L ++K Q+ L+ KV+P N + L +
Sbjct: 292 KKEAAVRMLAELKKLPEPPVDPEKKKKYQRHGLYNAKKVKPKSDIDPTLNSISILGQILQ 351
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
R P PVY E G ++ FT+ V ++ G+G +KK AK+ AA ML+ +
Sbjct: 352 RRHDPAPVYSLVEERGHMMKKEFTLRVKVGSHEALGVGPNKKTAKKNAAEAMLQLM 407
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 112 RISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF--------- 162
R+SLT + + IG G+ K++A+H+AA+ + L E+L+ Q
Sbjct: 167 RVSLTVGEQEF--IGEGRDKQKARHDAAQKAMKVL----REELLTQMSQCGIEVSGDTNE 220
Query: 163 -------------KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
+ + + + Q+ E TR ++ E G H + F + A V Y
Sbjct: 221 TVSNGVDAGDEEDESDKSEISQVYEIA-TRMKMMVDFQDMENAGPAHMKKFKIKATVGPY 279
Query: 210 KEEGMGKSKKIAKREAALNMLKFLETVP 237
EG G KK AK+EAA+ ML L+ +P
Sbjct: 280 MTEGEGNRKKDAKKEAAVRMLAELKKLP 307
>gi|404497172|ref|YP_006721278.1| ribonuclease III [Geobacter metallireducens GS-15]
gi|418066666|ref|ZP_12704026.1| ribonuclease III [Geobacter metallireducens RCH3]
gi|90101627|sp|Q39T82.1|RNC_GEOMG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|78194775|gb|ABB32542.1| ribonuclease III [Geobacter metallireducens GS-15]
gi|373560159|gb|EHP86431.1| ribonuclease III [Geobacter metallireducens RCH3]
Length = 246
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNM 229
+ QE TR P YE T G PH+R FTV A V + EG G+SKK A++ AA +
Sbjct: 177 EFQEMVQTRFGTAPTYELIATDGPPHDRRFTVIAMVAGKRMGEGAGRSKKEAEQAAARQV 236
Query: 230 L 230
L
Sbjct: 237 L 237
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 82 MQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
QE++ +R GTAP YELI +G ++ F I++ + R+ G+G+SKKEA+ AA+
Sbjct: 178 FQEMVQTRFGTAPTYELIATDGPPHDRRFTV-IAMVAGKRM--GEGAGRSKKEAEQAAAR 234
Query: 141 SVLDQL 146
VL +
Sbjct: 235 QVLARF 240
>gi|327291984|ref|XP_003230700.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like,
partial [Anolis carolinensis]
Length = 404
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 38/207 (18%)
Query: 70 RLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGK 129
+L T + PVS + E + G+ +++L+ +G ++P FKY + + + ++ A+ S
Sbjct: 76 QLCTTGKNPVSALMEYAQKSGSVCEFQLLAQDGPPHDPKFKYCVKIGDQ--VFPAVVS-N 132
Query: 130 SKKEAKHNAAKSVLDQLIGRDDEKLMCQKENL-FKV-------EP--------------- 166
SKK AK AA++ + L G D + ++E+L F++ EP
Sbjct: 133 SKKGAKQMAAEAAIRGLSG--DMSIFAEQEDLAFELSGSQAVEEPKASSAKGVGELIKYL 190
Query: 167 --NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKR 223
NPV L E + ++ E TG PH+ F A V + SKK K+
Sbjct: 191 NSNPVSGLLEYARANAFAAE-FKLIEQTGPPHDPKFVFQAKVGGRWFPAVTAHSKKQGKQ 249
Query: 224 EAALNMLKFLETVPIEIPEKKQGEDVD 250
EAA L+ L I E +Q E+ +
Sbjct: 250 EAADAALRVL------IGESEQAENTE 270
>gi|333909022|ref|YP_004482608.1| ribonuclease 3 [Marinomonas posidonica IVIA-Po-181]
gi|333479028|gb|AEF55689.1| Ribonuclease 3 [Marinomonas posidonica IVIA-Po-181]
Length = 227
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKKIAKREAALN 228
+LQE RK P Y+ + G PH++ F V ++ + E EG G S++IA++ AA
Sbjct: 158 RLQEYLQARKHALPQYDVVDIVGEPHDQTFHVHCHIELCNEAIEGCGNSRRIAEQNAAAK 217
Query: 229 MLKFLETVPI 238
L+ LE V +
Sbjct: 218 ALEKLEKVNV 227
>gi|395845300|ref|XP_003795379.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Otolemur garnettii]
Length = 1145
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 31/183 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G++ ++ L+ EG ++P F+Y +++ +++ V S SKK AK
Sbjct: 561 KSPVTALLECVHKLGSSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTV---SAPSKKVAK 617
Query: 136 HNAAKSVLDQLIGR---------DDEKLMCQKENLFKVEP---------------NPVGQ 171
AA+ + L G D C ENL V P NPVG
Sbjct: 618 QMAAEEAIKALHGEATSSDDQPGDTNTESC--ENLESVVPGKVRRINELVKYLNTNPVGG 675
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNML 230
L E + + ++ + +G PHE F A V + SKK K+EAA L
Sbjct: 676 LLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 734
Query: 231 KFL 233
+ L
Sbjct: 735 RVL 737
>gi|395845296|ref|XP_003795377.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Otolemur garnettii]
Length = 1171
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 31/183 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G++ ++ L+ EG ++P F+Y +++ +++ V S SKK AK
Sbjct: 561 KSPVTALLECVHKLGSSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTV---SAPSKKVAK 617
Query: 136 HNAAKSVLDQLIGR---------DDEKLMCQKENLFKVEP---------------NPVGQ 171
AA+ + L G D C ENL V P NPVG
Sbjct: 618 QMAAEEAIKALHGEATSSDDQPGDTNTESC--ENLESVVPGKVRRINELVKYLNTNPVGG 675
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNML 230
L E + + ++ + +G PHE F A V + SKK K+EAA L
Sbjct: 676 LLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 734
Query: 231 KFL 233
+ L
Sbjct: 735 RVL 737
>gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024]
gi|384955648|sp|F0KKL2.2|RNC_ACICP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024]
Length = 230
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>gi|445436650|ref|ZP_21440655.1| ribonuclease III [Acinetobacter baumannii OIFC021]
gi|444754649|gb|ELW79262.1| ribonuclease III [Acinetobacter baumannii OIFC021]
Length = 176
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 107 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFTVECLVDGLPKIYGEGSSRRFAEQAA 166
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 167 AAEILKLLE 175
>gi|375135607|ref|YP_004996257.1| ribonuclease III, ds RNA, partial [Acinetobacter calcoaceticus
PHEA-2]
gi|325123052|gb|ADY82575.1| ribonuclease III, ds RNA [Acinetobacter calcoaceticus PHEA-2]
Length = 176
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 107 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAA 166
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 167 AAEILKLLE 175
>gi|53804477|ref|YP_113920.1| ribonuclease III [Methylococcus capsulatus str. Bath]
gi|81682093|sp|Q608M7.1|RNC_METCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|53758238|gb|AAU92529.1| ribonuclease III [Methylococcus capsulatus str. Bath]
Length = 230
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIG---RDDEKLMCQKENLFKVE----------- 165
Y+ +GSG KS + + L+ ++G RD C+ L E
Sbjct: 92 YLILGSGELKSGGYRRDSILSDALEAILGAVLRDQGIDACRALILTLFERPLSALSLDDW 151
Query: 166 -PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+P +LQE R P PVY + +GLPH++ F V V + E G G S+K A+
Sbjct: 152 KKDPKTRLQELMQGRGLPLPVYTLIDQSGLPHDQHFRVRCEVPLAVEPCVGEGSSRKKAE 211
Query: 223 REAALNMLKFL 233
++AA NML L
Sbjct: 212 QQAAENMLSRL 222
>gi|325296829|ref|NP_001191656.1| neuron-specific staufen [Aplysia californica]
gi|59323978|gb|AAW84263.1| neuron-specific staufen [Aplysia californica]
Length = 950
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIA 221
+ V NP+ +L + +K PVY GLP R F V V G G +KK+A
Sbjct: 685 YGVGINPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVEVEDKTCPGSGPNKKLA 744
Query: 222 KREAALNMLKFLE-TVPIEIPEKK--QGEDVDEKGESNGLK 259
KR AA ML+ L T P P K + E G++NG K
Sbjct: 745 KRAAAEAMLQLLGYTKPSPQPTKSSFKNPSTGEAGQTNGDK 785
>gi|356552945|ref|XP_003544820.1| PREDICTED: ribonuclease 3-like protein 2-like [Glycine max]
Length = 345
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL---IGRDDEKLMCQKENLFKVEPN-------PVGQ 171
+VA S K AK AAK L +L + D+K + F + N P +
Sbjct: 213 FVASASSSQKDHAKLEAAKIALGKLAHLVPSTDKKSATNMKLNFAADENGTWVVEAPKNK 272
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
L+E C +KWP P Y E+ +G HE+ F VCA
Sbjct: 273 LRELCAVKKWPIPEYIIEKDSGPSHEKKF-VCA 304
>gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 381
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ T D PVS + EL + G K++ Q G +F + V GS
Sbjct: 211 IVTAETIDEQPVSTLHELCQKHGKDIKFKSWQKGGTTVVNVFV--------GGVLVGTGS 262
Query: 128 GKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK-ENLFKVEPNPVGQLQEA-------CMTR 179
+ AK NA + L +L G +++++ + VE VG+L+E C +
Sbjct: 263 SEQMGIAKLNATRDALSKLHGGGNQQVLTTGVGHGLGVE---VGELRECKKKLIDQCNRK 319
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYV 206
WP P+++ E+ G H+R F V
Sbjct: 320 LWPKPIFKLEKEDGPAHDRTFVYSVQV 346
>gi|167854942|ref|ZP_02477717.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
gi|167853899|gb|EDS25138.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
Length = 223
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 139 AKSVLDQLIGRDDEKLMCQKENLF------KVEPNPVGQLQEACMTRKWPPPVYETEETT 192
A LD I R E++ C + L + + +P +LQE RK P P YE +
Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177
Query: 193 GLPHERMFTVCAYVNVYKE--EGMGKSKKIAKREAALNMLKFL 233
G H + F V V E G G S++ A+++AAL ++K L
Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVL 220
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 69 MRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
M+L + P + +QE L R+ P YE+I I+G + FK +S E + IG+
Sbjct: 144 MQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIKGEAHNQTFK--VSCKVEKVDEIFIGN 201
Query: 128 GKSKKEAKHNAAKSVLDQL 146
G S+++A+ +AA V+ L
Sbjct: 202 GTSRRKAEQDAALQVIKVL 220
>gi|444721725|gb|ELW62445.1| Double-stranded RNA-specific adenosine deaminase [Tupaia chinensis]
Length = 1234
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 33/192 (17%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
V LNT PV + E G A +++L+ G +EP F+Y +++ ++ V S
Sbjct: 628 VRYLNT---NPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFQYCVAVGDQTFPTV---S 681
Query: 128 GKSKKEAKHNAAKSVLDQLIGR-------DDEKLMCQKENLFKVEP-------------- 166
SKK AK AA+ + L G DD+ ++L +EP
Sbjct: 682 APSKKVAKQMAAEEAMKALHGEATNPASSDDQPGSANMDSLDNLEPGMPSKVRKIGELVR 741
Query: 167 ----NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIA 221
NPVG L E + + ++ + +G PHE F A V + SKK
Sbjct: 742 YLNTNPVGGLLEYARSHGFAAE-FKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQG 800
Query: 222 KREAALNMLKFL 233
K+EAA L+ L
Sbjct: 801 KQEAADAALRVL 812
>gi|269957060|ref|YP_003326849.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
gi|269305741|gb|ACZ31291.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
Length = 239
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQEAC R +P P YE + G H R F G G +KK A++EAA +
Sbjct: 170 LQEACAERGYPAPTYEV-DAEGPEHARAFHAQVTAGPVLGLGHGTAKKHAEQEAAEQAYR 228
Query: 232 FLETVPIE 239
L+ +P E
Sbjct: 229 ALQAIPAE 236
>gi|219870402|ref|YP_002474777.1| ribonuclease III [Haemophilus parasuis SH0165]
gi|254807496|sp|B8F3C7.1|RNC_HAEPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|219690606|gb|ACL31829.1| ribonuclease III/dsRNA-specific ribonuclease [Haemophilus parasuis
SH0165]
Length = 223
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 139 AKSVLDQLIGRDDEKLMCQKENLF------KVEPNPVGQLQEACMTRKWPPPVYETEETT 192
A LD I R E++ C + L + + +P +LQE RK P P YE +
Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177
Query: 193 GLPHERMFTVCAYVNVYKE--EGMGKSKKIAKREAALNMLKFL 233
G H + F V V E G G S++ A+++AAL ++K L
Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVL 220
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 69 MRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
M+L + P + +QE L R+ P YE+I I+G + FK +S E + IG+
Sbjct: 144 MQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIKGEAHNQTFK--VSCKVEKVDEIFIGN 201
Query: 128 GKSKKEAKHNAAKSVLDQL 146
G S+++A+ +AA V+ L
Sbjct: 202 GTSRRKAEQDAALQVIKVL 220
>gi|15242329|ref|NP_199328.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
gi|75171238|sp|Q9FKF0.1|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName:
Full=Ribonuclease III-like protein 3; Short=RNase
III-like protein 3; AltName: Full=Ribonuclease
three-like protein 3
gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana]
gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
Length = 957
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 18/157 (11%)
Query: 153 KLMCQKENLFKVEP-NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE 211
K M ++ VEP N G+L E C KWP P++ +E G +E F + +
Sbjct: 292 KQMVVDKDSLHVEPVNGRGELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPNI 351
Query: 212 EG-------MGKSKKIAKREAALNMLKFLET--VPIEIPEKKQGEDVDEKGESNGLKHTH 262
EG + KK A+ A +M++ LE+ V + I ++ + +DEK
Sbjct: 352 EGTFHMKGDIKSKKKQAENSLAYHMIRALESSLVSLVISNLQKPKSLDEKNNPLLFSSEM 411
Query: 263 DSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN 299
DS+ + ++KI Y F KT LL++LL+ N
Sbjct: 412 DSSV---EAVEKILNYS--FVNKT---LLKELLTHNN 440
>gi|390949031|ref|YP_006412790.1| ribonuclease III [Thiocystis violascens DSM 198]
gi|390425600|gb|AFL72665.1| ribonuclease III [Thiocystis violascens DSM 198]
Length = 224
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 16/77 (20%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV---------CAYVNVYKEEGMGKS 217
+P +LQE +RKWP P Y E G H+++FTV CA+ G G S
Sbjct: 154 DPKTRLQEWLQSRKWPLPDYVVTEIGGDQHDQIFTVSCLLTDRNLCAF-------GTGSS 206
Query: 218 KKIAKREAALNMLKFLE 234
++ A++ AA ML+ +E
Sbjct: 207 RRRAEQSAAQAMLEQIE 223
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRL 121
A RL+ + P + +QE L SR+ P Y + +I G ++ IF LT R
Sbjct: 140 AERLDDTSAAQSGKDPKTRLQEWLQSRKWPLPDYVVTEIGGDQHDQIFTVSCLLTD--RN 197
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL 146
A G+G S++ A+ +AA+++L+Q+
Sbjct: 198 LCAFGTGSSRRRAEQSAAQAMLEQI 222
>gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 222
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
+EPNP LQE + PP+Y +G H +F + V+ K GKSKK+ +
Sbjct: 148 IEPNPKSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVDGKKRRATGKSKKLGEE 207
Query: 224 EAALNMLKFLET 235
AA ML+ L+
Sbjct: 208 NAARMMLEELKA 219
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 78 PVSLMQELLSRRGTAPK-YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P S +QELL +G P Y +I G + PIF+ I + + R +GKSKK +
Sbjct: 152 PKSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVDGKKRR----ATGKSKKLGEE 207
Query: 137 NAAKSVLDQL 146
NAA+ +L++L
Sbjct: 208 NAARMMLEEL 217
>gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 379
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ T D PVS + EL + G K++ Q G +F + V GS
Sbjct: 209 IVTAETIDEQPVSTLHELCQKHGKDIKFKSWQKGGTTVVNVFV--------GGVLVGTGS 260
Query: 128 GKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK-ENLFKVEPNPVGQLQEA-------CMTR 179
+ AK NA + L +L G +++++ + VE VG+L+E C +
Sbjct: 261 SEQMGIAKLNATRDALSKLHGGGNQQVLTTGVGHGLGVE---VGELRECKKKLIDQCNRK 317
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYV 206
WP P+++ E+ G H+R F V
Sbjct: 318 LWPKPIFKLEKEDGPAHDRTFVYSVQV 344
>gi|120555160|ref|YP_959511.1| ribonuclease III [Marinobacter aquaeolei VT8]
gi|387813404|ref|YP_005428886.1| RNase III [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|120325009|gb|ABM19324.1| RNAse III [Marinobacter aquaeolei VT8]
gi|381338416|emb|CCG94463.1| RNase III [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 229
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMGKSKKIA 221
+ +P +LQE +R++P P YE G H + F V CA ++ K G G S+++A
Sbjct: 153 TQKDPKTRLQEYLQSRQFPLPRYEVISVDGEAHNQTFHVSCALPSLDRKTTGTGSSRRVA 212
Query: 222 KREAALNMLKFL 233
+++AA N LK L
Sbjct: 213 EQQAARNALKQL 224
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 65 RLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RL + + + P + +QE L SR+ P+YE+I ++G + F +L S R
Sbjct: 144 RLANLDIQDTQKDPKTRLQEYLQSRQFPLPRYEVISVDGEAHNQTFHVSCALPSLDR--K 201
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL 146
G+G S++ A+ AA++ L QL
Sbjct: 202 TTGTGSSRRVAEQQAARNALKQL 224
>gi|34978642|gb|AAQ83572.1| VP11 [Liao ning virus]
Length = 198
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
N VG +QE + P YE G PH R FT+ A K EG+G SKK+A+ AA
Sbjct: 9 NAVGLMQEYAIKLSESAPSYEDVGFEGPPHNRSFTIVATFRDKKYEGIGPSKKVARSIAA 68
>gi|82469814|gb|ABB77165.1| R2D2 [Drosophila rufa]
Length = 305
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL-----IGRDDEKLMCQKEN------------LFKVEP 166
A G+G+SK++AKH AA ++L ++ +G ++ EN + +
Sbjct: 32 AYGNGRSKRDAKHLAAGNILRKIRKLPGVG----SMLADLENNENDGVGELASEMTNLNR 87
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
+ + +L++ C+ + P P E + +G P+ F C V G KK A++ AA
Sbjct: 88 DMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVRYGKSDKKKDARQRAA 147
Query: 227 LNMLKFL 233
+ ML +
Sbjct: 148 IAMLAVI 154
>gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus
cuniculus]
Length = 1150
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G++ ++ L+ EG ++P F+Y +++ S++ S SKK AK
Sbjct: 560 KSPVTTLLECVHKLGSSCEFRLLSKEGPAHDPKFQYCVAVGSQT---FPTASAPSKKVAK 616
Query: 136 HNAAKSVLDQL-------IGRDDEKLMCQKENLFKVEP------------------NPVG 170
AA+ + L DD+ E+L +E NPVG
Sbjct: 617 QMAAEEAMKALQEEAANPTASDDQSGGSNTESLEALESGLPSKVRKVGELVRYLNTNPVG 676
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 677 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 735
Query: 230 LKFL 233
L+ L
Sbjct: 736 LRVL 739
>gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
gi|424054689|ref|ZP_17792213.1| ribonuclease 3 [Acinetobacter nosocomialis Ab22222]
gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
gi|407439438|gb|EKF45963.1| ribonuclease 3 [Acinetobacter nosocomialis Ab22222]
Length = 230
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLPKIYGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>gi|325120999|ref|NP_001191404.1| staufen [Aplysia californica]
gi|37728097|gb|AAO38741.1| staufen [Aplysia californica]
Length = 618
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIA 221
+ V NP+ +L + +K PVY GLP R F V V G G +KK+A
Sbjct: 353 YGVGINPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVEVEDKTCPGSGPNKKLA 412
Query: 222 KREAALNMLKFLE-TVPIEIPEKK--QGEDVDEKGESNGLK 259
KR AA ML+ L T P P K + E G++NG K
Sbjct: 413 KRAAAEAMLQLLGYTKPSPQPTKSSFKNPSTGEAGQTNGDK 453
>gi|425740592|ref|ZP_18858760.1| ribonuclease III [Acinetobacter baumannii WC-487]
gi|425494615|gb|EKU60814.1| ribonuclease III [Acinetobacter baumannii WC-487]
Length = 176
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 107 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLPKIYGEGSSRRFAEQAA 166
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 167 AAEILKLLE 175
>gi|225460893|ref|XP_002278706.1| PREDICTED: ribonuclease 3-like protein 2-like [Vitis vinifera]
Length = 364
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENL---FKVEPNPVGQ-LQEACM 177
++A GS K+ AK NAAK L +L + + M Q NL E + Q L E C
Sbjct: 239 FIASGSSDEKEIAKLNAAKEALQKLSSKLKDTEMTQN-NLEINGSCEIDGAKQKLHEFCS 297
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYV 206
+KWP P Y E+ G HE+ F ++
Sbjct: 298 KKKWPKPSYRIEKEVGPAHEKGFLCSVHI 326
>gi|406882844|gb|EKD30540.1| hypothetical protein ACD_78C00013G0002 [uncultured bacterium (gcode
4)]
Length = 249
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 121 LYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRK 180
LY+ +G +EAK K VL L+ + +KE + +P LQE +
Sbjct: 141 LYLDLG----YEEAKSFVKKYVLSTLLE------ILEKE----LHVDPKSHLQEIAQDKY 186
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNML 230
P YE +G H + +TV AY+ + GMG SKK A++EAA N L
Sbjct: 187 LTTPTYEVLGESGSDHNKSYTVGAYIGTKQVGTGMGSSKKKAQQEAAENAL 237
>gi|398342486|ref|ZP_10527189.1| ribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 218
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIG--------RDDEKLMCQKENLFKVEPNPVGQ-- 171
YV +G G+ + ++ + ++ + LIG EK++ F P +
Sbjct: 87 YVLLGKGEGQGSSQKKLSANLFESLIGAIYLDQGLEIAEKIILNHLIAFAENPEKMESVK 146
Query: 172 -----LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREA 225
LQE C + P Y + +G H + F V + + Y+ EG G++KK A+++A
Sbjct: 147 DFKTLLQETCQRKFKLLPTYRLIQESGPDHAKTFLVSVRIRDRYEAEGTGRNKKFAEQDA 206
Query: 226 ALNMLKFL 233
A MLK L
Sbjct: 207 ARKMLKVL 214
>gi|195037815|ref|XP_001990356.1| GH18282 [Drosophila grimshawi]
gi|193894552|gb|EDV93418.1| GH18282 [Drosophila grimshawi]
Length = 833
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 39 RVLFDNNEIKQIPKVSTNNLPLEE---AARLEVMRLNTGDRTPVSLMQELLSR-RGTAPK 94
R L +IKQ P +T + A+ + + L D+ PV ++ EL S+ R T P+
Sbjct: 718 RGLISREDIKQQPARATGARASSKNTNASNIAQVALTAQDKHPVCVLNELTSKNRWTPPQ 777
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146
Y L G + +F + + + +S Y S +KKEAK NAAK L L
Sbjct: 778 YTLRGDSGPSHSRMFLFSVEINGQS--YTPAQSCNNKKEAKMNAAKLCLRAL 827
>gi|164508752|emb|CAM07151.1| double-stranded RNA activated protein kinase [Danio rerio]
Length = 682
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 126 GSGKSKKEAKHNAAKSVLDQLIG-RDDEKLMCQKENL----FKVEPNPVGQLQEACMTRK 180
G+GK+KKEAK NAAK+ L+ L DE EN+ PN L E +
Sbjct: 53 GTGKTKKEAKQNAAKNALEGLKSTHSDEPTPSPVENISISKIASHPNYTCWLNEHSQKSR 112
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVY----KE--EGMGKSKKIAKREAALNMLKFL 233
+++ E+T + + +C YV Y KE EG GK+KK AK AAL + + L
Sbjct: 113 L---MFKACESTKMDPGNLTRLCTYVCKYVCDDKEFPEGYGKNKKEAKEAAALRVYEEL 168
>gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera]
Length = 337
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENL---FKVEPNPVGQ-LQEACM 177
++A GS K+ AK NAAK L +L + + M Q NL E + Q L E C
Sbjct: 212 FIASGSSDEKEIAKLNAAKEALQKLSSKLKDTEMTQN-NLEINGSCEIDGAKQKLHEFCS 270
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYV 206
+KWP P Y E+ G HE+ F ++
Sbjct: 271 KKKWPKPSYRIEKEVGPAHEKGFLCSVHI 299
>gi|321468345|gb|EFX79330.1| hypothetical protein DAPPUDRAFT_244967 [Daphnia pulex]
Length = 96
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 152 EKLMCQKENLFK--VEP--NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN 207
EKL KE++ K EP NP G L E TR P Y +G H + + + ++
Sbjct: 6 EKLGTLKEDIPKPPTEPTLNPSGVLSEWRFTRHSSLPEYRVVRKSGPSHSKTYFMTCKLS 65
Query: 208 VYKEEGMGKSKKIAKREAALNMLKFLE 234
EG GKSKK AK +AA ML+ LE
Sbjct: 66 DRVTEGEGKSKKAAKNDAAQKMLQILE 92
>gi|398348068|ref|ZP_10532771.1| ribonuclease III [Leptospira broomii str. 5399]
Length = 222
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIG--------RDDEKLMCQKENLFKVEPNPVGQ-- 171
YV +G G+ + ++ + ++ + LIG EK++ F P +
Sbjct: 91 YVLLGKGEGQGSSQKKLSANLFESLIGAIYLDQGLEIAEKIILNHLIAFAENPEKMESVK 150
Query: 172 -----LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREA 225
LQE C + P Y + +G H + F V + + Y+ EG G++KK A+++A
Sbjct: 151 DFKTLLQETCQRKFKLLPTYRLIQESGPDHAKTFLVSVRIRDRYEAEGTGRNKKFAEQDA 210
Query: 226 ALNMLKFL 233
A MLK L
Sbjct: 211 ARKMLKVL 218
>gi|429124459|ref|ZP_19184991.1| ribonuclease III [Brachyspira hampsonii 30446]
gi|426279698|gb|EKV56719.1| ribonuclease III [Brachyspira hampsonii 30446]
Length = 251
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 65 RLEVMRLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RL + + D+ ++ QEL+ ++ T+P Y+ + N +FK + + ++
Sbjct: 150 RLSNLDIENFDKDYKTIFQELIQKKHKTSPIYKSCEFHDENNNDMFKAEVYVNDKT---F 206
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL 146
A+G GKSKKEA+ NAAK LD++
Sbjct: 207 ALGIGKSKKEAETNAAKKALDKI 229
>gi|119944412|ref|YP_942092.1| ribonuclease III [Psychromonas ingrahamii 37]
gi|189043334|sp|A1SSM8.1|RNC_PSYIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|119863016|gb|ABM02493.1| RNAse III [Psychromonas ingrahamii 37]
Length = 228
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEEGMGKSKKIAKR 223
+ +P +LQE +RK P P+YE E G H + FT+ C+ + +G G S++ A++
Sbjct: 155 QKDPKTRLQEHLQSRKQPLPIYEVLEIKGEAHNQRFTMSCSIDGLKSVQGQGTSRRKAEQ 214
Query: 224 EAALNMLKFL 233
AA ML L
Sbjct: 215 IAANKMLDSL 224
>gi|358451275|ref|ZP_09161709.1| ribonuclease III [Marinobacter manganoxydans MnI7-9]
gi|385330525|ref|YP_005884476.1| ribonuclease 3 [Marinobacter adhaerens HP15]
gi|311693675|gb|ADP96548.1| ribonuclease 3 [Marinobacter adhaerens HP15]
gi|357224508|gb|EHJ03039.1| ribonuclease III [Marinobacter manganoxydans MnI7-9]
Length = 229
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 157 QKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGM 214
+K +L + +P +LQE +R++P P Y+ G H + F V CA ++ K G
Sbjct: 146 EKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDVISVDGEAHNQTFHVSCALPSLDRKTTGT 205
Query: 215 GKSKKIAKREAALNMLK 231
G S+++A+++AA N LK
Sbjct: 206 GSSRRVAEQQAARNALK 222
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 65 RLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RLE + L + P + +QE L SR+ P+Y++I ++G + F +L S R
Sbjct: 144 RLEKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDVISVDGEAHNQTFHVSCALPSLDR--K 201
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL 146
G+G S++ A+ AA++ L +L
Sbjct: 202 TTGTGSSRRVAEQQAARNALKEL 224
>gi|426331793|ref|XP_004026878.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Gorilla gorilla gorilla]
Length = 1200
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEASNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|426331791|ref|XP_004026877.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Gorilla gorilla gorilla]
Length = 1226
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEASNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|344226974|gb|AEN03185.1| dsRNA-dependent protein kinase [Carassius auratus]
Length = 677
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
VSL+ E R +YE EG + F R + + G+GKSKKEAK +A
Sbjct: 9 VSLLNEYQQRTQCTVEYEEGSTEGPSHNKTFTMRAIINGQR---YPDGTGKSKKEAKQSA 65
Query: 139 AKSVLDQLIGRDDEKLMCQ-----KENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTG 193
A++ LD + + + N+ N L E K V++ ETT
Sbjct: 66 ARNALDGIKSTYNTESTTSSVQNISNNMTISHRNYTCWLNEHSQKNKL---VFKARETTK 122
Query: 194 LPHERMFTVCAYVNVY----KE--EGMGKSKKIAKREAAL 227
+ +C YV Y +E E GK+KK AK AAL
Sbjct: 123 MDTGNSTQLCTYVCKYICGDREFPEAYGKNKKEAKEAAAL 162
>gi|324502096|gb|ADY40922.1| Double-stranded RNA-binding protein Staufen [Ascaris suum]
Length = 906
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-------- 146
+E+++ EG ++ + R + S + +A G G SKK AK NA +L +L
Sbjct: 375 FEILREEGPAHDRHYLLRCKMISPDEVIIADGEGGSKKIAKQNACALMLTKLKSLETSPI 434
Query: 147 -----IGRDDEKLMCQKE-------NLFKVEP------NPVGQLQEACMTRKWPPPVYET 188
I + +K KE K++P NPV +L + RK P ++
Sbjct: 435 FIASSIFKSQKKASIPKEVKRKTIIKDMKMDPEYGHQINPVSRLMQVMQARKENEPKFQL 494
Query: 189 EETTGLPHERMFTV---CAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV-PIEIPEK 243
G + F V CA + + EG G +KK+AKR AA ML + V P+ P K
Sbjct: 495 VAEHGQSRYKEFVVEVTCA--DGLRCEGTGPNKKLAKRAAAEAMLARIGYVKPMPKPGK 551
>gi|432950687|ref|XP_004084563.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like, partial [Oryzias latipes]
Length = 663
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+ +L + +K P Y GLP R F + V EGMG SKK+AKR AA
Sbjct: 378 NPISRLAQIQQAKKEKEPEYTLVTERGLPRRREFVMQVSVCGQTAEGMGPSKKVAKRNAA 437
Query: 227 LNMLKFL 233
ML+ L
Sbjct: 438 EKMLELL 444
>gi|406936515|gb|EKD70217.1| hypothetical protein ACD_46C00599G0006 [uncultured bacterium]
Length = 224
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 119 SRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD---------DEKLMCQKENLFKVEPN-- 167
S L++ G +S A+H+ ++ +IG E+++ ++ K N
Sbjct: 88 SFLFLGPGEIRSGGHARHSILSCAMEAIIGAIYLDGGFAVVHERIIDWYDDWLKSLSNVA 147
Query: 168 ----PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIA 221
P LQE +R+ P+Y E G H+++FTV + E+ G G S++ A
Sbjct: 148 NHKDPKTLLQEFLQSRRMSLPIYTVESIEGEAHQQLFTVSCQIESVMEKTFGKGTSRRRA 207
Query: 222 KREAALNMLK 231
+++AA MLK
Sbjct: 208 EQDAAQAMLK 217
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 76 RTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+ P +L+QE L SRR + P Y + IEG ++ +F +S ES + G G S++ A
Sbjct: 150 KDPKTLLQEFLQSRRMSLPIYTVESIEGEAHQQLFT--VSCQIESVMEKTFGKGTSRRRA 207
Query: 135 KHNAAKSVL 143
+ +AA+++L
Sbjct: 208 EQDAAQAML 216
>gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens]
Length = 970
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|313224320|emb|CBY20109.1| unnamed protein product [Oikopleura dioica]
Length = 348
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 26/210 (12%)
Query: 75 DRTPVSLMQELLSRRG---TAPKYELIQI------EGAINEPIFKYRISLTSESRLYVAI 125
D TP +L+ E+ + G + Y Q+ + ++ IF+ + S +
Sbjct: 26 DATPCTLLSEIAGKAGGLKSQLDYAFRQMTRETIEDNTHSQHIFECQCSFAG----MITS 81
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP-----NPVGQLQEACMTRK 180
GS KK AKH A++ +L L R K + E F E NP +L E R
Sbjct: 82 GSNTKKKNAKHLASEYMLRSLQERGMVKGLRVPEKPFLGESDDNFDNPTSKLFEFVQIRG 141
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEE-GMGKSKKIAKREAALNMLKFLETVPIE 239
PV+ + + + C ++ E GM SKK AKREA +ML+ LE+ +E
Sbjct: 142 IEKPVFWDD----MYGTQFKMTCTIASLKLESFGMCSSKKQAKREACRHMLEKLESCDVE 197
Query: 240 --IPEKKQGEDVDEKGESNGLKHTHDSTFL 267
+ E + + ++E+ E N H + +T++
Sbjct: 198 GLMKEHELQQKLEEEDEENDY-HRNKNTYM 226
>gi|359408393|ref|ZP_09200863.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676587|gb|EHI48938.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
Length = 239
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIA 221
+++ NP +LQE + K+ P+Y TG HE MFT+ V+ + G G+++K A
Sbjct: 158 ELDSNPKSELQEWAASAKYDRPLYHLVSQTGSAHEPMFTMSVEVSGLGVSAGEGRTRKQA 217
Query: 222 KREAALNML 230
+REAA L
Sbjct: 218 EREAARQFL 226
Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 72 NTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS 130
N D P S +QE S + P Y L+ G+ +EP+F + + S L V+ G G++
Sbjct: 157 NELDSNPKSELQEWAASAKYDRPLYHLVSQTGSAHEPMFTMSVEV---SGLGVSAGEGRT 213
Query: 131 KKEAKHNAAKSVLDQLIGRD 150
+K+A+ AA+ L + ++
Sbjct: 214 RKQAEREAARQFLLHYVHKN 233
>gi|395729746|ref|XP_002810146.2| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
5 [Pongo abelii]
Length = 1226
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan
troglodytes]
Length = 931
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 374
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 375 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 434
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 435 GLLEYARSHGFAAE-FKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 493
Query: 230 LKFL 233
L+ L
Sbjct: 494 LRVL 497
>gi|403293613|ref|XP_003937807.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Saimiri boliviensis boliviensis]
Length = 1182
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y + + +++ V S SKK AK
Sbjct: 569 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSV---SAPSKKVAK 625
Query: 136 HNAAKSVLDQLIGR-------DDEKLMCQKENLFKVEP------------------NPVG 170
AA+ + L G DD+ E+L +E NPVG
Sbjct: 626 QMAAEEAMKALHGEATNSMLSDDQPEGTISESLDNLESMMPNKVRRIGELVRYLNTNPVG 685
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 686 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 744
Query: 230 LKFL 233
L+ L
Sbjct: 745 LRVL 748
>gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens]
Length = 905
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 374
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 375 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 434
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 435 GLLEYARSHGFAAE-FKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 493
Query: 230 LKFL 233
L+ L
Sbjct: 494 LRVL 497
>gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Callithrix jacchus]
Length = 1200
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y + + +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGR-------DDEKLMCQKENLFKVEP------------------NPVG 170
AA+ + L G DD+ E+L +E NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMLSDDQPEGTISESLDNLESMMPNKVRRIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|410299060|gb|JAA28130.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|337291062|ref|YP_004630083.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
gi|334699368|gb|AEG84164.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
Length = 249
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNML 230
LQE RK P PVYE +TG H + FT V EG+G +KK+A++ AA +
Sbjct: 181 LQERAAERKLPVPVYEAS-STGPEHSQTFTAVVTVGTTALGEGIGPNKKLAEQAAAHKAV 239
Query: 231 KFLETVP 237
FL+ P
Sbjct: 240 VFLQENP 246
>gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo
sapiens]
gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens]
gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens]
gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens]
gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct]
gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct]
Length = 1226
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|410222682|gb|JAA08560.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410263176|gb|JAA19554.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410334879|gb|JAA36386.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo
sapiens]
Length = 1244
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 631 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 687
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 688 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 747
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 748 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 806
Query: 230 LKFL 233
L+ L
Sbjct: 807 LRVL 810
>gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799]
gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799]
Length = 224
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 64 ARLEVMRLNTGDRTPVSLMQE-LLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLY 122
ARL+++ + P + +QE L +R+ P+YE++ +EG + F R S+++ +
Sbjct: 142 ARLDIIEPGIRQKDPKTRLQEHLQARKQPLPEYEVVSVEGDAHNQRFTVRCSVSALAE-- 199
Query: 123 VAIGSGKSKKEAKHNAAKSVLDQL 146
IG+G S+++A+ +AA VL+QL
Sbjct: 200 PMIGNGSSRRKAEQDAASRVLEQL 223
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+ +P +LQE RK P P YE G H + FTV V+ E G G S++ A+
Sbjct: 153 QKDPKTRLQEHLQARKQPLPEYEVVSVEGDAHNQRFTVRCSVSALAEPMIGNGSSRRKAE 212
Query: 223 REAALNMLKFL 233
++AA +L+ L
Sbjct: 213 QDAASRVLEQL 223
>gi|443698431|gb|ELT98408.1| hypothetical protein CAPTEDRAFT_158003 [Capitella teleta]
Length = 385
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV--YKEEGMGKSKKIAKRE 224
+PV L E C R+W P ++ G PH +MF A VN Y+ +KK AK
Sbjct: 310 HPVSALMELCKRRRWATPTFDQVSEHGPPHRKMFLFKARVNNVDYQPNVASGTKKAAKLN 369
Query: 225 AALNMLKFL 233
AA+ L+ L
Sbjct: 370 AAIVCLQTL 378
>gi|915284|gb|AAC13782.1| p136 [Homo sapiens]
gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens]
Length = 1226
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 1221
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 608 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 664
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 665 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 724
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 725 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 783
Query: 230 LKFL 233
L+ L
Sbjct: 784 LRVL 787
>gi|156357520|ref|XP_001624265.1| predicted protein [Nematostella vectensis]
gi|156211031|gb|EDO32165.1| predicted protein [Nematostella vectensis]
Length = 118
Score = 44.3 bits (103), Expect = 0.11, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKRE 224
+P+ LQE C +KW P ++ G PH + F VN Y+ + + +KK AK +
Sbjct: 41 HPISMLQEICARKKWQLPDFQLIFDHGPPHSKQFLFKVAVNGYEYQPQVVSSNKKQAKAQ 100
Query: 225 AALNMLKFLETVP 237
AL LK + VP
Sbjct: 101 CALYALKAIGAVP 113
>gi|301171314|ref|NP_001180330.1| interleukin enhancer-binding factor 3-B [Xenopus laevis]
gi|50414914|gb|AAH77828.1| Unknown (protein for MGC:80491) [Xenopus laevis]
Length = 698
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 49/207 (23%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL---IGRD 150
+Y+LI G ++ PIF +S+ + + + A SG SKK AK + A VL + G D
Sbjct: 418 QYKLISQTGPVHAPIFT--MSVEVDDKTFEA--SGPSKKTAKLHVAVKVLQDMGLPTGID 473
Query: 151 DEKLMCQKENLFKVEPNPV-----------------------GQLQEACMTRKWPPPV-- 185
+ ++E++ + E PV G+ Q +TR PV
Sbjct: 474 E-----KEESVDESEEKPVLQTPSQTADSEQADSSAGDQSESGKQQGPILTRHGKNPVME 528
Query: 186 ---------YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL--- 233
YE TG H++ F + V+ K +G G +KK+AK AAL+ L+ L
Sbjct: 529 LNEKRRGLKYELISETGGSHDKRFIMEVEVDGVKFQGNGSNKKVAKAYAALSALEKLFPD 588
Query: 234 ETVPIEIPEKKQGEDVDEKGESNGLKH 260
T E P+KK+ + G KH
Sbjct: 589 YTTYTEAPKKKRPPMMPRGGPKFAGKH 615
>gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
Length = 931
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 374
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 375 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 434
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 435 GLLEYARSHGFAAE-FKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 493
Query: 230 LKFL 233
L+ L
Sbjct: 494 LRVL 497
>gi|313104303|sp|P55265.4|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=136 kDa double-stranded
RNA-binding protein; Short=p136; AltName:
Full=Interferon-inducible protein 4; Short=IFI-4;
AltName: Full=K88DSRBP
Length = 1226
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo
sapiens]
gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens]
Length = 1200
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens]
Length = 1226
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens]
Length = 1200
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens]
gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 931
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 374
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 375 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 434
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 435 GLLEYARSHGFAAE-FKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 493
Query: 230 LKFL 233
L+ L
Sbjct: 494 LRVL 497
>gi|350553751|ref|ZP_08922913.1| Ribonuclease 3 [Thiorhodospira sibirica ATCC 700588]
gi|349789977|gb|EGZ43905.1| Ribonuclease 3 [Thiorhodospira sibirica ATCC 700588]
Length = 228
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY--KEEGMGKSKKIAKRE 224
+P +LQE + +P P YE ++ TG PHE+ F ++ + K G G S++ A++
Sbjct: 151 DPKTRLQEYLQEKGFPVPQYELQDITGKPHEQHFRALCLIHSHDLKAIGEGSSRRKAEQA 210
Query: 225 AALNMLKFLET 235
AA +L+ L+
Sbjct: 211 AAAQILEKLQA 221
>gi|260663569|ref|ZP_05864459.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260552110|gb|EEX25163.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 232
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L R G A +Y+L+ G N+P+F+ +++ + VA G G SKK A+ +AAK
Sbjct: 166 LQEFLQRNGDVAIEYDLLSEGGTENDPVFEVEVTVDGKK---VATGQGSSKKHAEMDAAK 222
Query: 141 SVLDQL 146
L++L
Sbjct: 223 HALEKL 228
>gi|326794405|ref|YP_004312225.1| ribonuclease 3 [Marinomonas mediterranea MMB-1]
gi|326545169|gb|ADZ90389.1| Ribonuclease 3 [Marinomonas mediterranea MMB-1]
Length = 227
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKKIAKREAALN 228
+LQE RK P YE G PH++ F V ++ ++ + EG G S++IA++ AA
Sbjct: 158 RLQEYLQARKHGLPQYEVVNIDGEPHDQTFFVHCHIEIFDQAVEGKGNSRRIAEQNAAAE 217
Query: 229 MLKFLE 234
L LE
Sbjct: 218 ALSQLE 223
>gi|71281241|ref|YP_270777.1| ribonuclease III [Colwellia psychrerythraea 34H]
gi|90101619|sp|Q47WP5.1|RNC_COLP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71146981|gb|AAZ27454.1| ribonuclease III [Colwellia psychrerythraea 34H]
Length = 266
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+ +P +LQE RK P P YE +TTG H + FTV +V E G S++ A+
Sbjct: 155 QKDPKTRLQEFLQGRKIPLPTYEVIDTTGQSHNQEFTVRCQTSVISEVVIAKGTSRRKAE 214
Query: 223 REAALNMLKFLE 234
+EAA +L +E
Sbjct: 215 QEAAQQILALIE 226
>gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191]
gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191]
Length = 221
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 122 YVAIGSGKSKKEAK------HNAAKSVLDQLI---GRDDEKLMCQK----ENLFKVEPNP 168
Y+A+G+G++ + NA ++VL + G + K + K ++L +V +
Sbjct: 94 YLALGAGEAATGGRTRESILSNAMEAVLGAVYLDGGFESVKNIINKWISTQSLTEVSSDY 153
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE---GMGKSKKIAKREA 225
LQE + P YE +T G HE++FTV V+ K+E G GK+KK+A+++A
Sbjct: 154 KSTLQEIVQKKYKSVPEYEVIQTVGPEHEKIFTVV--VSSLKKELGRGRGKNKKLAEQDA 211
Query: 226 ALNMLKFL 233
A N L+ L
Sbjct: 212 AKNALENL 219
>gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens]
Length = 1257
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 644 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 700
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 701 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 760
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 761 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 819
Query: 230 LKFL 233
L+ L
Sbjct: 820 LRVL 823
>gi|32490945|ref|NP_871199.1| hypothetical protein WGLp196 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|30173145|sp|Q8D305.1|RNC_WIGBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|25166151|dbj|BAC24342.1| rnc [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 226
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 19/124 (15%)
Query: 122 YVAIGSGKSKKEAKH------NAAKSV-----LDQLIGRDDEKLMCQKEN------LFKV 164
Y+ +G G+ K K+ NA +++ LD I + E ++ +N L +
Sbjct: 93 YLILGIGEVKTGGKNRDSILSNAMEAIIGGIFLDSNINKTHEIVISWYKNRLYSMSLKNL 152
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+ +P +LQE K+ P Y + TG H + FT+C +++ K+ G GK+++ A+
Sbjct: 153 KKDPKTRLQEYLQGNKFSLPQYYIKNITGESHNQEFTICCFIDDLKKSVIGYGKTRRKAE 212
Query: 223 REAA 226
+ AA
Sbjct: 213 QSAA 216
>gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1]
gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1]
Length = 304
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P S +QE L G P Y+L++ +G ++ F ++ S+ +A G+G++KKEA+
Sbjct: 188 PKSALQEKLQEDGITPTYKLVETQGPPHDRTFVAQVFAGSQG---LARGTGRTKKEAESQ 244
Query: 138 AAKSVLDQL 146
AAKS L +L
Sbjct: 245 AAKSTLARL 253
>gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Callithrix jacchus]
Length = 1226
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y + + +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGR-------DDEKLMCQKENLFKVEP------------------NPVG 170
AA+ + L G DD+ E+L +E NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMLSDDQPEGTISESLDNLESMMPNKVRRIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
>gi|397492942|ref|XP_003817378.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase [Pan paniscus]
Length = 1194
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 607 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 663
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 664 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 723
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 724 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 782
Query: 230 LKFL 233
L+ L
Sbjct: 783 LRVL 786
>gi|290463410|sp|Q6DD04.2|ILF3B_XENLA RecName: Full=Interleukin enhancer-binding factor 3-B; AltName:
Full=Double-stranded RNA-binding protein 4F.2;
Short=DsRNA-binding protein 4F.2
Length = 898
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 49/207 (23%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL---IGRD 150
+Y+LI G ++ PIF +S+ + + + A SG SKK AK + A VL + G D
Sbjct: 418 QYKLISQTGPVHAPIFT--MSVEVDDKTFEA--SGPSKKTAKLHVAVKVLQDMGLPTGID 473
Query: 151 DEKLMCQKENLFKVEPNPV-----------------------GQLQEACMTRKWPPPV-- 185
+ ++E++ + E PV G+ Q +TR PV
Sbjct: 474 E-----KEESVDESEEKPVLQTPSQTADSEQADSSAGDQSESGKQQGPILTRHGKNPVME 528
Query: 186 ---------YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL--- 233
YE TG H++ F + V+ K +G G +KK+AK AAL+ L+ L
Sbjct: 529 LNEKRRGLKYELISETGGSHDKRFIMEVEVDGVKFQGNGSNKKVAKAYAALSALEKLFPD 588
Query: 234 ETVPIEIPEKKQGEDVDEKGESNGLKH 260
T E P+KK+ + G KH
Sbjct: 589 YTTYTEAPKKKRPPMMPRGGPKFAGKH 615
>gi|384515974|ref|YP_005711066.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|397654323|ref|YP_006495006.1| ribonuclease III [Corynebacterium ulcerans 0102]
gi|334697175|gb|AEG81972.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|393403279|dbj|BAM27771.1| ribonuclease III [Corynebacterium ulcerans 0102]
Length = 249
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNML 230
LQE RK P PVYE +TG H + FT V EG+G +KK+A++ AA +
Sbjct: 181 LQERAAERKLPVPVYEAS-STGPEHSQTFTAVVTVGTTALGEGVGPNKKLAEQAAAHKAV 239
Query: 231 KFLETVP 237
FL+ P
Sbjct: 240 VFLQENP 246
>gi|359300160|ref|ZP_09185999.1| ribonuclease III [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305203|ref|ZP_10824262.1| ribonuclease III [Haemophilus sputorum HK 2154]
gi|400376316|gb|EJP29203.1| ribonuclease III [Haemophilus sputorum HK 2154]
Length = 223
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 76 RTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+ P + +QE L SR+ P YE+I I+G + FK +T L+ IGSG S+++A
Sbjct: 151 KDPKTRLQEFLQSRKQPLPIYEVIDIKGEAHNQTFKVSCQVTQLDMLF--IGSGTSRRKA 208
Query: 135 KHNAAKSVL 143
+ NAA+ VL
Sbjct: 209 EQNAAEQVL 217
>gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens]
Length = 1278
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 644 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 700
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 701 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 760
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 761 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 819
Query: 230 LKFL 233
L+ L
Sbjct: 820 LRVL 823
>gi|50085655|ref|YP_047165.1| ribonuclease III [Acinetobacter sp. ADP1]
gi|81392620|sp|Q6F9C2.1|RNC_ACIAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|49531631|emb|CAG69343.1| ribonuclease III, ds RNA [Acinetobacter sp. ADP1]
Length = 230
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ VC + + G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVVCLVEGLPRVMGEGSSRRFAEQTA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
Length = 520
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE + PP Y G H++ F++C + G GKSKK A++ AA N LK
Sbjct: 454 LQEFVQEKGNTPPCYTIHREFGPDHDKTFSICVKACDIESMGSGKSKKAAEQHAAQNALK 513
Query: 232 FLE 234
L+
Sbjct: 514 SLK 516
>gi|156374036|ref|XP_001629615.1| predicted protein [Nematostella vectensis]
gi|156216619|gb|EDO37552.1| predicted protein [Nematostella vectensis]
Length = 580
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 30/178 (16%)
Query: 193 GLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK 252
G PH+ F V VN EG G SK+ AK +AA L+ +P I + + D
Sbjct: 19 GPPHDTTFVVAVTVNGQTYEGKGSSKQRAKHDAAEKALQSCVQLPFNIKTEYAPTNEDFT 78
Query: 253 GESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLE 312
++ G T +S QKT P S D + P++YL
Sbjct: 79 ADATGNSFTENSE----------------NGQKTSDP------SKLGKADISKHPVMYLN 116
Query: 313 DLS-DELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRAL 369
+L ++ Y+ E S+ D F ++L F GTG S + AK+ A +AL
Sbjct: 117 ELHPTQIDYQFE----EGTSEHDKFICNIELNGVE---FSGTGTSKKKAKVVAATKAL 167
>gi|194665306|ref|XP_581374.4| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|297472608|ref|XP_002686059.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|296489763|tpg|DAA31876.1| TPA: RNA adenosine deaminase-like [Bos taurus]
Length = 1149
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ PV+ + E + + G++ ++ L+ EG ++P F+Y +++ + + S SKK AK
Sbjct: 562 KNPVTTLLECVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHT---FPTASAPSKKAAK 618
Query: 136 HNAAKSVLDQLIGR-------DDEKLMCQKE---NLFKVEP---------------NPVG 170
AA+ + L G +D+ E NL V P NPVG
Sbjct: 619 QMAAEEAMKALQGEATSSTSSEDQPGSTNTEAFDNLESVMPNKVRRISELVRYLNTNPVG 678
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 679 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 737
Query: 230 LKFL 233
L+ L
Sbjct: 738 LRVL 741
>gi|33152642|ref|NP_873995.1| ribonuclease III [Haemophilus ducreyi 35000HP]
gi|73917578|sp|Q7VL75.1|RNC_HAEDU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|33148866|gb|AAP96384.1| ribonuclease III [Haemophilus ducreyi 35000HP]
Length = 222
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 66 LEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
L+ M+ + P + +QE L RR P+YE++ I+G + IFK +S E+ +
Sbjct: 141 LDEMKPGDAQKDPKTRLQEFLQGRRLKLPEYEVLDIKGEAHNQIFK--VSCKIETFTDIF 198
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
IG G S+++A+ NAA+ +L +L
Sbjct: 199 IGIGTSRRKAEQNAAEQILLKL 220
>gi|449526603|ref|XP_004170303.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like protein 2-like
[Cucumis sativus]
Length = 338
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL-----MCQKENLFKVEPNPVGQLQEAC 176
+VA GS K+ A+ NAA+ L +L D +L + + F++E +L + C
Sbjct: 212 FVASGSSMQKEIARLNAAREALIKLSDSMDTELKHFVTIDGIDESFEIE-GAKQKLHDVC 270
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCA 204
RKW P Y E+ G HER+F VC+
Sbjct: 271 CKRKWQKPNYSVEKDLGPSHERIF-VCS 297
>gi|514260|gb|AAA19961.1| dsRNA-binding protein 4F.2, partial [Xenopus laevis]
Length = 800
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 49/207 (23%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL---IGRD 150
+Y+LI G ++ PIF +S+ + + + A SG SKK AK + A VL + G D
Sbjct: 320 QYKLISQTGPVHAPIFT--MSVEVDDKTFEA--SGPSKKTAKLHVAVKVLQDMGLPTGID 375
Query: 151 DEKLMCQKENLFKVEPNPV-----------------------GQLQEACMTRKWPPPV-- 185
+ ++E++ + E PV G+ Q +TR PV
Sbjct: 376 E-----KEESVDESEEKPVLQTPSQTADSEQADSSAGDQSESGKQQGPILTRHGKNPVME 430
Query: 186 ---------YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL--- 233
YE TG H++ F + V+ K +G G +KK+AK AAL+ L+ L
Sbjct: 431 LNEKRRGLKYELISETGGSHDKRFIMEVEVDGVKFQGNGSNKKVAKAYAALSALEKLFPD 490
Query: 234 ETVPIEIPEKKQGEDVDEKGESNGLKH 260
T E P+KK+ + G KH
Sbjct: 491 YTTYTEAPKKKRPPMMPRGGPKFAGKH 517
>gi|418058719|ref|ZP_12696686.1| ribonuclease II [Methylobacterium extorquens DSM 13060]
gi|373567705|gb|EHP93667.1| ribonuclease II [Methylobacterium extorquens DSM 13060]
Length = 690
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV 208
E NP +LQE C K P P YE E GLPH+R+F A V V
Sbjct: 511 ELNPRNRLQEYCARAKHPAPTYEVSE-RGLPHDRVFEAVATVRV 553
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE-----GMGKSKKIAKREA 225
+L+ AC RKWP P +E + G H FT A + + G+SKK A+R A
Sbjct: 613 RLETACRKRKWPMPRFEV-KGDGPSHAPTFTAVARLRAGGRDLVTPACAGRSKKEAERVA 671
Query: 226 ALNMLKFLE 234
A ML +E
Sbjct: 672 ARAMLDLVE 680
>gi|313754294|pdb|3LLH|A Chain A, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding
Protein 2
gi|313754295|pdb|3LLH|B Chain B, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding
Protein 2
Length = 90
Score = 43.9 bits (102), Expect = 0.14, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G G SKK AK
Sbjct: 14 KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQGPSKKAAK 69
Query: 136 HNAAKSVLDQLIG 148
H AA+ L L G
Sbjct: 70 HKAAEVALKHLKG 82
>gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Nomascus leucogenys]
Length = 1253
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 666 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 722
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 723 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 782
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 783 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 841
Query: 230 LKFL 233
L+ L
Sbjct: 842 LRVL 845
>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
Length = 227
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREA 225
+P LQE R+ P PVY T E TG H FTV V + + GKSK++A++ A
Sbjct: 158 DPKTGLQEWAQGRRLPLPVYTTVEQTGPAHAPEFTVEVVVEGLAPQRASGKSKRLAEQLA 217
Query: 226 ALNMLKFLETVP 237
A M LE +P
Sbjct: 218 AAAM---LEAIP 226
>gi|426218981|ref|XP_004003711.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Ovis
aries]
Length = 1155
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ PV+ + E + + G++ ++ L+ EG ++P F+Y +++ + + S SKK AK
Sbjct: 568 KNPVTTLLECVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHT---FPTASAPSKKAAK 624
Query: 136 HNAAKSVLDQLIGR-------DDEKLMCQKENLFKVEP------------------NPVG 170
AA+ + L G DD+ E +E NPVG
Sbjct: 625 QMAAEEAMKALQGEATSSASSDDQPGSTNTEAFDTLESVMPNKVRRISELVRYLNTNPVG 684
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 685 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 743
Query: 230 LKFL 233
L+ L
Sbjct: 744 LRVL 747
>gi|344286449|ref|XP_003414970.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Loxodonta africana]
Length = 1154
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ PV+ + E + + G++ ++ L+ EG ++P F+Y +++ + S SKK AK
Sbjct: 567 KNPVTTLLECVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGPHT---FPTASAPSKKVAK 623
Query: 136 HNAAKSVLDQLIGR-------DDEKLMCQKE---NLFKVEP---------------NPVG 170
AA+ + L G DD+ E NL + P NPVG
Sbjct: 624 QMAAEEAMKALHGEATNSTPSDDQPGGTNTESFDNLESIMPNKVRRIGELVRYLNTNPVG 683
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 684 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 742
Query: 230 LKFL 233
L+ L
Sbjct: 743 LRVL 746
>gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Nomascus leucogenys]
Length = 1279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 666 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 722
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 723 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 782
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 783 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 841
Query: 230 LKFL 233
L+ L
Sbjct: 842 LRVL 845
>gi|384208374|ref|YP_005594094.1| ribonuclease III [Brachyspira intermedia PWS/A]
gi|343386024|gb|AEM21514.1| ribonuclease III [Brachyspira intermedia PWS/A]
Length = 244
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 65 RLEVMRLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RL+ + + D+ ++ QEL+ ++ T+P Y+ + N +FK + + ++
Sbjct: 150 RLKNLDIENFDKDYKTIFQELIQKKHKTSPIYKSYEYYDDNNHEMFKAEVYVNDKN---F 206
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL 146
A+G GKSKKEA+ NAAK LD++
Sbjct: 207 ALGVGKSKKEAETNAAKKALDKI 229
>gi|426392079|ref|XP_004062387.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Gorilla gorilla gorilla]
Length = 581
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 148 GRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN 207
GR+ E+ ENL K E + Q+ E + R P +E +G PH + F V
Sbjct: 173 GRESEE-----ENLNKSE---ISQVFEIALKRNLPV-NFEVARESGPPHMKNFVTKVSVG 223
Query: 208 VYKEEGMGKSKKIAKREAALNMLKFLETVP 237
+ EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 224 EFVGEGEGKSKKISKKNAAIAVLEELKKLP 253
>gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
lyrata]
gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
lyrata]
Length = 892
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 24/160 (15%)
Query: 153 KLMCQKENLFKVEP-NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV--- 208
K M ++ VEP + G+L E C KWP P++ EE G +E+ F + +
Sbjct: 231 KQMVVDKDSLHVEPTDGRGKLIEICTKNKWPRPIFSVEEERGPKNEQKFVCSVKIEIPNI 290
Query: 209 ---YKEEGMGKS-KKIAKREAALNMLKFLET--VPIEIPEKKQGEDVDEKG----ESNGL 258
+ +G KS KK A+ +A +M++ LE+ + + I + E +DEK +S+ +
Sbjct: 291 EGSFHMKGDAKSKKKQAENSSAYHMIRALESSLMSLVISNLQMPESLDEKNNPLMDSDSV 350
Query: 259 KHTH---DSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLL 295
+ + +F+ +L ++ ++T PL ++L+
Sbjct: 351 EAVEKILNYSFVNKNLLNELLTHNT-------SPLFQRLM 383
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 155 MCQKENLFKVEP-NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEG 213
M EN+ VEP + G+L E C KWP P++ EE G +E F + + EG
Sbjct: 772 MVIDENIPHVEPEDEKGKLFEICTKNKWPNPIFSVEEERGPKNELKFVCSVKIEIPSIEG 831
>gi|213626233|gb|AAI70035.1| Unknown (protein for MGC:196762) [Xenopus laevis]
Length = 1313
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 46 EIKQIPKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAIN 105
E Q+P+V N+P + + ++ P+SL+ E + G +++L+ EG +
Sbjct: 699 ENTQVPEVKEENVPAQPSFSC--------NKNPISLLMEHGQKSGNMCEFQLVSQEGPPH 750
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148
+P F Y + + +++ V +KK AKH AA++ + +L+G
Sbjct: 751 DPKFTYTVKIGNQTFPPVV---ANNKKMAKHLAAEAAVRELLG 790
>gi|321468344|gb|EFX79329.1| hypothetical protein DAPPUDRAFT_244966 [Daphnia pulex]
Length = 96
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 152 EKLMCQKENLFK--VEP--NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN 207
EKL KE + K EP N G L E TR P Y T+G H + + + ++
Sbjct: 6 EKLGTLKEGIPKPPTEPTLNASGVLSEWRFTRHSSLPEYRVVRTSGPSHSKTYFMTCKLS 65
Query: 208 VYKEEGMGKSKKIAKREAALNMLKFLE 234
EG GKSKK AK +AA ML+ LE
Sbjct: 66 DRVTEGEGKSKKAAKNDAAQKMLQILE 92
>gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015]
gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015]
Length = 225
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAKREAA 226
+LQE R + P YE E +G PHE+ FTV Y++ + + G+S++ A++ AA
Sbjct: 155 RLQEWLQGRHYALPQYEMVEVSGKPHEQQFTVSCYIDSHDVQVNATGRSRRKAEQAAA 212
>gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243]
gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243]
gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
Length = 281
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P S +QE L G P Y+L++ +G ++ F ++ S+ +A G+G++KKEA+
Sbjct: 165 PKSALQEKLQEDGITPTYKLVETQGPPHDRTFVAQVFAGSQG---LARGTGRTKKEAESQ 221
Query: 138 AAKSVLDQL 146
AAKS L +L
Sbjct: 222 AAKSTLARL 230
>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
Length = 256
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE C K P PVY T +TG H++ FT A V + G+G +KK+A+++AA
Sbjct: 180 LQELCAELKAPMPVY-TATSTGPEHDQTFTAVATVAGLTVGNGVGHNKKLAEQQAAQEAC 238
Query: 231 KFLETVPI 238
+ L P+
Sbjct: 239 QTLRETPL 246
>gi|449459642|ref|XP_004147555.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 338
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL-----MCQKENLFKVEPNPVGQLQEAC 176
+VA GS K+ A+ NAA+ L +L D ++ + + F++E +L + C
Sbjct: 212 FVASGSSMQKEIARLNAAREALIKLSDSMDTRIKTFVTIDGIDESFEIE-GAKQKLHDVC 270
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCA 204
RKW P Y E+ G HER+F VC+
Sbjct: 271 CKRKWQKPNYSVEKDLGPSHERIF-VCS 297
>gi|170285302|gb|AAI61331.1| Unknown (protein for IMAGE:7619279) [Xenopus (Silurana) tropicalis]
Length = 145
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 69 MRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISL 115
M ++ +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+
Sbjct: 1 MLASSPGKTPISLLQEYGTRVGKTPVYDLLKAEGQAHQPNFTFRVSV 47
>gi|18027283|gb|AAL55731.1|AF281068_2 TAR RNA-binding protein TRBP2 [Homo sapiens]
Length = 74
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS 72
>gi|269966648|ref|ZP_06180727.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
gi|269828715|gb|EEZ82970.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
Length = 445
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 69 MRLNTGDRTPVSL-MQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+RL+ + P+ + +QE SR+ AP+Y++++I G + +F + S+ +E A+G
Sbjct: 102 IRLDASNEKPMKMVLQEYAQSRKLQAPQYDVVEISGPQHNQVFSVQCSIVNEK----AVG 157
Query: 127 SGKSKKEAKHNAAKSVLDQL 146
SG SKK+A +AA + +L
Sbjct: 158 SGNSKKKASEDAAIKLYQKL 177
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEEGMGKSKKIAKREAALNML 230
LQE +RK P Y+ E +G H ++F+V C+ VN K G G SKK A +AA+ +
Sbjct: 116 LQEYAQSRKLQAPQYDVVEISGPQHNQVFSVQCSIVN-EKAVGSGNSKKKASEDAAIKLY 174
Query: 231 KFL 233
+ L
Sbjct: 175 QKL 177
>gi|359397188|ref|ZP_09190238.1| Ribonuclease 3 [Halomonas boliviensis LC1]
gi|357968982|gb|EHJ91431.1| Ribonuclease 3 [Halomonas boliviensis LC1]
Length = 226
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 160 NLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKS 217
+L + +P +LQE +R+ P YE G H + FTV Y+++ E G G S
Sbjct: 143 SLQDTQKDPKTRLQEFLQSRQAALPRYEVVCVKGEAHAQTFTVECYIDLLAEHTTGKGPS 202
Query: 218 KKIAKREAALNMLKFLETVP 237
++ A+++AA L +LE P
Sbjct: 203 RRHAEQQAAEEALSYLEKSP 222
>gi|406940754|gb|EKD73426.1| hypothetical protein ACD_45C00321G0009 [uncultured bacterium]
Length = 220
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 121 LYVAIGSGKSKKEAKHNAAKSVLDQLIGR---DDEKLMCQKENLFKVEP----------- 166
LY+ +G KS + + ++ ++G D L + L +P
Sbjct: 91 LYLGMGELKSGGSERMSILSCAMEAIVGAIYLDGGFLAVHEAILSWYQPLLNSLMLAASH 150
Query: 167 -NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P QLQE PVYE E G H++ F V V K G G S++ A++ A
Sbjct: 151 KDPKTQLQEYLQRHHLSLPVYEVEALEGEAHQQTFVVSCTVQDQKVLGKGTSRRRAEQAA 210
Query: 226 ALNMLKFLE 234
A NML+ ++
Sbjct: 211 AENMLEIIK 219
>gi|406915938|gb|EKD54975.1| hypothetical protein ACD_60C00029G0002 [uncultured bacterium]
Length = 219
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
+P QLQE P P+Y E G H+++F V V K G G S++ A++EAA
Sbjct: 151 DPKTQLQEYLQRHHLPLPLYTVEMVEGEAHQQIFVVSCTVRDKKITGKGTSRRRAEQEAA 210
Query: 227 LNMLKFLE 234
+ML+ ++
Sbjct: 211 EHMLEIIK 218
>gi|226951500|ref|ZP_03821964.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
gi|294651022|ref|ZP_06728362.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
gi|226837793|gb|EEH70176.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
gi|292823123|gb|EFF81986.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
Length = 231
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ C + K +G G S++ A++ A
Sbjct: 162 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTA 221
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 222 AAEILKLLE 230
>gi|448746162|ref|ZP_21727830.1| Ribonuclease III, bacterial [Halomonas titanicae BH1]
gi|445566024|gb|ELY22131.1| Ribonuclease III, bacterial [Halomonas titanicae BH1]
Length = 230
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 160 NLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKS 217
+L + +P +LQE +R+ P YE G H + FTV Y+++ E G G S
Sbjct: 147 SLQDTQKDPKTRLQEFLQSRQAALPRYEVVCVKGEAHAQTFTVECYIDLLAEHTTGKGPS 206
Query: 218 KKIAKREAALNMLKFLETVP 237
++ A+++AA L +LE P
Sbjct: 207 RRHAEQQAAEEALSYLEKSP 226
>gi|344940862|ref|ZP_08780150.1| Ribonuclease 3 [Methylobacter tundripaludum SV96]
gi|344262054|gb|EGW22325.1| Ribonuclease 3 [Methylobacter tundripaludum SV96]
Length = 227
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRIS--LTSES 119
A +L+ + L+ + P + +QEL+ SR+ P Y L+ + G +E FK + + LT+E
Sbjct: 140 AEKLKSLSLDNWQKDPKTQLQELMQSRKMELPDYTLMTMSGLAHEQTFKVKCTTPLTAEP 199
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150
IG+G S+K+A+ +AA+ +L+ L+ +D
Sbjct: 200 ----CIGTGNSRKKAEQSAAELMLE-LLNKD 225
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 30/162 (18%)
Query: 102 GAINEPIFKYRISLTSESRL-----------YVAIGSG--KSKKEAKHNAAKSVLDQLIG 148
GA + + R SL ++ L Y+ +GSG KS + + ++ +IG
Sbjct: 61 GACEGVLSRLRASLVNQGSLAELARKHQLGDYLLLGSGELKSGGFRRDSILSDAVEAIIG 120
Query: 149 R--DDEKLMCQKENLFKV-------------EPNPVGQLQEACMTRKWPPPVYETEETTG 193
+D+ + ++ + ++ + +P QLQE +RK P Y +G
Sbjct: 121 ALYNDQGMDASQQWILQLFAEKLKSLSLDNWQKDPKTQLQELMQSRKMELPDYTLMTMSG 180
Query: 194 LPHERMFTVCAYVNVYKEE--GMGKSKKIAKREAALNMLKFL 233
L HE+ F V + E G G S+K A++ AA ML+ L
Sbjct: 181 LAHEQTFKVKCTTPLTAEPCIGTGNSRKKAEQSAAELMLELL 222
>gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
lyrata]
gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
lyrata]
Length = 786
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 21/138 (15%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEG---MGKSKKIAKRE 224
P G+L + C+ KWP P+Y EE G +E+ F + + EG M K K+E
Sbjct: 365 PKGKLHKICVKNKWPFPIYRIEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKPKKKE 424
Query: 225 A----ALNMLKFLET----------VPIEIPEKKQGEDVDEKGESNGLKHTH---DSTFL 267
A A +M++ LE+ +P + EKK V + +S+ +K + F
Sbjct: 425 AENSSAYHMIRALESSLMSLVINPQMPKVLDEKKNPSLVSSEMDSDSVKAVEKILNYVFT 484
Query: 268 TPQILKK-IQQYHTVFSQ 284
+LK+ ++Q ++F +
Sbjct: 485 NKNLLKEALRQTSSLFQK 502
>gi|184155714|ref|YP_001844054.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
gi|227515694|ref|ZP_03945743.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|385812507|ref|YP_005848898.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
fermentum CECT 5716]
gi|238692982|sp|B2GD42.1|RNC_LACF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|183227058|dbj|BAG27574.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
gi|227085942|gb|EEI21254.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|299783404|gb|ADJ41402.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
fermentum CECT 5716]
Length = 232
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L R G A +Y+L+ G N+P+F+ +++ + VA G G SKK A+ AAK
Sbjct: 166 LQEFLQRNGDVAIEYDLLSEGGTENDPVFEVEVTVDGKK---VATGQGSSKKHAEMEAAK 222
Query: 141 SVLDQL 146
L++L
Sbjct: 223 HALEKL 228
>gi|193627224|ref|XP_001952647.1| PREDICTED: hypothetical protein LOC100161769 [Acyrthosiphon pisum]
Length = 732
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIAKREA 225
+PV L E C RKW P + T + +G H + F + VN V ++KK+AK EA
Sbjct: 657 HPVSLLNEFCAKRKWDIPKFNTLDESGPSHRKTFIMTVVVNGVQYCSSRCQTKKLAKMEA 716
Query: 226 ALNMLK 231
A LK
Sbjct: 717 AKECLK 722
>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
Length = 233
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREA 225
+P +LQE C R PVYE E+ TG H FT +V+ G G SKK ++ A
Sbjct: 160 SPKSRLQEVCQKRFHIAPVYELEDETGPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIA 219
Query: 226 ALNMLKFLE 234
AL+ L L+
Sbjct: 220 ALSALDKLD 228
>gi|380029682|ref|XP_003698496.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
Staufen homolog 2-like [Apis florea]
Length = 783
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 143/347 (41%), Gaps = 60/347 (17%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PVSL+ E +RG +E++ G + F+ + ++ + V +G G SKK +
Sbjct: 399 KSPVSLVHEKALKRGLPVSFEVVSEIGKPHIRTFRTKCTVGDK----VTLGEGPSKKVSI 454
Query: 135 KHNAAKSVLDQL----------------IGRDDEKLMCQKENLFKV--EP---------- 166
K +AA+ +L++L + R + NL KV EP
Sbjct: 455 KEHAAEFMLEELNRLPPLPETIQNRLVRVKRKPPATKKKSRNLIKVYQEPRSETDAAEEV 514
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NPV +L + ++ PVY E G P + F + + + +G+G +KK+AKR AA
Sbjct: 515 NPVSRLDQIQQAKREKEPVYNLIEEKGAPRRKEFVMEVTMGQHSAQGIGPNKKLAKRAAA 574
Query: 227 LNMLKFLETVPIEIPEKKQGEDVDEKGES-NGLKHTHDSTFLTPQILKKIQQY----HTV 281
+L L P+ + + + GES N + TFL + + + Q + T+
Sbjct: 575 EALLAQLG---YSKPQPQPTKPSIKTGESENTEQKPRKVTFLEDEQINETQSHPPVGGTI 631
Query: 282 FSQKTKGPLL-------------------EKLLSTRNLIDEVEDPILYLEDLSDELKYRV 322
Q G LL E+L + P L+ LS + V
Sbjct: 632 GRQLVPGLLLVDGGQESKLGSGPSVQIVAEELRGQQQQNPPTVSPKDQLKYLSQLFNFSV 691
Query: 323 SFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRAL 369
F D + + + SL+ L+T P V G G + ++ EA +AL
Sbjct: 692 EFNDFPKGAVNKEYLSLVTLSTDPPQVCHGNGPTRTASRNEAALKAL 738
>gi|29126828|gb|AAH47984.1| LOC398578 protein, partial [Xenopus laevis]
Length = 854
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 49/207 (23%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL---IGRD 150
+Y+LI G ++ PIF +S+ + + + A SG SKK AK + A VL + G D
Sbjct: 408 QYKLISQTGPVHAPIFT--MSVEVDDKTFEA--SGPSKKTAKLHVAVKVLQDMGLPTGID 463
Query: 151 DEKLMCQKENLFKVEPNPV-----------------------GQLQEACMTRKWPPPV-- 185
+ ++E++ + E PV G+ Q +TR PV
Sbjct: 464 E-----KEESVDESEEKPVLQTPSQTADSEQADSSAGDQSESGKQQGPILTRHGKNPVME 518
Query: 186 ---------YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL--- 233
YE TG H++ F + V+ K +G G +KK+AK AAL+ L+ L
Sbjct: 519 LNEKRRGLKYELISETGGSHDKRFIMEVEVDGVKFQGNGSNKKVAKAYAALSALEKLFPD 578
Query: 234 ETVPIEIPEKKQGEDVDEKGESNGLKH 260
T E P+KK+ + G KH
Sbjct: 579 YTTYTEAPKKKRPPMMPRGGPKFAGKH 605
>gi|425746437|ref|ZP_18864467.1| ribonuclease III [Acinetobacter baumannii WC-323]
gi|425486314|gb|EKU52686.1| ribonuclease III [Acinetobacter baumannii WC-323]
Length = 218
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ C + K +G G S++ A++ A
Sbjct: 149 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTA 208
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 209 AAEILKLLE 217
>gi|153871985|ref|ZP_02001008.1| Ribonuclease III [Beggiatoa sp. PS]
gi|152071548|gb|EDN68991.1| Ribonuclease III [Beggiatoa sp. PS]
Length = 225
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIGR---DDEKLMCQ-------KENLFKVE---- 165
Y+ +G G KS + + ++ +IG D + CQ +E+L K+
Sbjct: 92 YLRLGDGEIKSGGAKRTSTLADAVEAIIGAIYLDSDMKTCQAVILPIWQESLSKLSLEKI 151
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKKIAKR 223
+P +LQE R+ P+Y T+G PHE+ F V + KE G G S++ A++
Sbjct: 152 KDPKTRLQEYLQERQQTLPIYRVLSTSGTPHEQHFEVECRIPYLKEPTYGSGHSRRRAEQ 211
Query: 224 EAALNMLKFLETV 236
AA +L L +
Sbjct: 212 SAAAKVLSILNVI 224
>gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|29427422|sp|P59476.1|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 226
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIG--------RDDEKLMCQ--KENLFKVEP--- 166
Y+ +G G KS + + + ++ LIG + EKL+ + K L + P
Sbjct: 93 YLQLGQGELKSGGFRRESILANTVEALIGSIFLDSNLKTIEKLILKWYKNRLKAINPSDT 152
Query: 167 --NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+P +LQE ++ P P Y E+ G H ++FT+ ++ E+ G+G S++ A+
Sbjct: 153 QKDPKTRLQEYLQSKHLPLPSYLVEQVYGEAHNQLFTIYCEISGINEKTIGIGSSRRKAE 212
Query: 223 REAALNML 230
+EAA N L
Sbjct: 213 QEAAQNAL 220
>gi|410456969|ref|ZP_11310816.1| ribonuclease III [Bacillus bataviensis LMG 21833]
gi|409926943|gb|EKN64094.1| ribonuclease III [Bacillus bataviensis LMG 21833]
Length = 246
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 70 RLNTGDRTPV----SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVA 124
++N G + V S +QEL+ R GT +Y ++Q +G + F ++SL E +
Sbjct: 163 KINAGAFSHVMDFKSQLQELIQRDGTGMIEYRVLQEKGPAHNKEFVSKVSLNGEE---LG 219
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
+G+GKSKKEA+ +AA+ L L
Sbjct: 220 VGTGKSKKEAEQHAAQMALGVL 241
>gi|304384763|ref|ZP_07367109.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328957|gb|EFL96177.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 235
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QELL R G YELI G N+ +F ++S ++ +A GSG SKK A+ NA
Sbjct: 167 SELQELLQRNGEVEINYELISETGPDNDLVFTVQVSAANQV---LAKGSGHSKKAAEQNA 223
Query: 139 AKSVLDQLIGRD 150
A L +L R+
Sbjct: 224 ANKALQKLRNRN 235
>gi|270290359|ref|ZP_06196584.1| ribonuclease III [Pediococcus acidilactici 7_4]
gi|418069035|ref|ZP_12706315.1| ribonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281140|gb|EFA26973.1| ribonuclease III [Pediococcus acidilactici 7_4]
gi|357537768|gb|EHJ21791.1| ribonuclease III [Pediococcus acidilactici MA18/5M]
Length = 232
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QELL R G YELI G N+ +F ++S ++ +A GSG SKK A+ NA
Sbjct: 164 SELQELLQRNGEVEINYELISETGPDNDLVFTVQVSAANQV---LAKGSGHSKKAAEQNA 220
Query: 139 AKSVLDQLIGRD 150
A L +L R+
Sbjct: 221 ANKALQKLRNRN 232
>gi|18027282|gb|AAL55730.1|AF281068_1 TAR RNA-binding protein TRBP1 [Homo sapiens]
Length = 53
Score = 42.7 bits (99), Expect = 0.26, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
+TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S
Sbjct: 8 KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS 51
>gi|405974376|gb|EKC39025.1| Double-stranded RNA-specific adenosine deaminase [Crassostrea
gigas]
Length = 651
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 96/249 (38%), Gaps = 32/249 (12%)
Query: 51 PKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFK 110
P ST + +E R + G + P+S + E S + Y + + F
Sbjct: 45 PSESTASKIPKEIPRELIENFRNGSKQPISALNEYCSLKRLVVSYREDAVLTYTFKQTFA 104
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDE----------------KL 154
Y ++ + G G +KKEAK N+A+ + ++G D E KL
Sbjct: 105 YVCNVDGKE---YPQGIGSTKKEAKANSARIAFNIILGFDKEDVDEDDGSVMFDAMGRKL 161
Query: 155 MCQKENLFKVE--------PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV 206
+ + + E NP+ +LQE C + P + E + G + F +V
Sbjct: 162 LTEPGRITSHEKPLKKDESKNPINKLQEYCAHKMLPFKI-EVGDQAG---PQGFGAAVFV 217
Query: 207 -NVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDST 265
+ + E SKK AKR A L L I + +++K S KH H
Sbjct: 218 RDEFIVEAFANSKKDAKRSVAEQALYRLMANDEVIRSQTVSLTIEDKMASVCFKHAHKVL 277
Query: 266 FLTPQILKK 274
+ P++L+K
Sbjct: 278 QMVPELLQK 286
>gi|405983301|ref|ZP_11041611.1| ribonuclease III [Slackia piriformis YIT 12062]
gi|404389309|gb|EJZ84386.1| ribonuclease III [Slackia piriformis YIT 12062]
Length = 258
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P S +QE L G P Y+L++ +G ++ F +S +A G G++KKEA+
Sbjct: 165 PKSALQEKLQEEGITPTYKLVETQGPPHDRTF---VSQVFAGMKALASGMGRTKKEAESQ 221
Query: 138 AAKSVLDQL 146
AAK+ LD L
Sbjct: 222 AAKTALDAL 230
>gi|256821980|ref|YP_003145943.1| ribonuclease III [Kangiella koreensis DSM 16069]
gi|256795519|gb|ACV26175.1| ribonuclease III [Kangiella koreensis DSM 16069]
Length = 229
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 157 QKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV--NVYKEEGM 214
Q +L V +P +LQE +RK P P YE + TG PH++ F V + + G
Sbjct: 147 QNIDLKAVHKDPKTELQEWLQSRKLPLPDYELLKVTGDPHKQTFDVACILAEKKVRTHGS 206
Query: 215 GKSKKIAKREAA 226
G S++ A+++AA
Sbjct: 207 GSSRRNAEQQAA 218
>gi|118580198|ref|YP_901448.1| ribonuclease III [Pelobacter propionicus DSM 2379]
gi|118502908|gb|ABK99390.1| RNAse III [Pelobacter propionicus DSM 2379]
Length = 234
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKI 220
+LQE R+ P PVY +G PH+R+F V + EG G+SKKI
Sbjct: 163 ELQELLSARRLPSPVYRLTGESGPPHDRLFIFQVLVDDAVVGEGEGRSKKI 213
>gi|359427856|ref|ZP_09218900.1| ribonuclease III [Acinetobacter sp. NBRC 100985]
gi|358236747|dbj|GAB00439.1| ribonuclease III [Acinetobacter sp. NBRC 100985]
Length = 205
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ C + K +G G S++ A++ A
Sbjct: 136 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECLIEGLPKIQGEGSSRRFAEQTA 195
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 196 AAEILKLLE 204
>gi|295105981|emb|CBL03524.1| RNAse III [Gordonibacter pamelaeae 7-10-1-b]
Length = 281
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P S +QE L G P Y+L++ +G ++ F ++ ++ +A G+G++KKEA+
Sbjct: 165 PKSALQEKLQEDGITPTYKLVETQGPPHDRTFVAQVFAGTQG---LARGTGRTKKEAESQ 221
Query: 138 AAKSVLDQL-----IGRDDE 152
AAKS L +L +G D+E
Sbjct: 222 AAKSTLARLGEFFGLGVDEE 241
>gi|352100962|ref|ZP_08958473.1| ribonuclease III [Halomonas sp. HAL1]
gi|350600883|gb|EHA16940.1| ribonuclease III [Halomonas sp. HAL1]
Length = 226
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 160 NLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKS 217
+L + +P +LQE +R+ P YE G H + FTV Y+++ E G G S
Sbjct: 143 SLQDTQKDPKTRLQEFLQSRQAALPRYEVVCVKGEAHAQTFTVECYIDLLVEHTTGKGPS 202
Query: 218 KKIAKREAALNMLKFLETVPIE 239
++ A+++AA L +LE P E
Sbjct: 203 RRHAEQQAAEEALSYLEKSPGE 224
>gi|221039636|dbj|BAH11581.1| unnamed protein product [Homo sapiens]
Length = 137
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSES 119
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS 72
>gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus]
gi|81666891|sp|Q7VRR0.1|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus]
Length = 232
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV--YKEEGMGKSKKIAK 222
+ +P +LQE P P+Y + G H+++F + V+ Y G G S++ A+
Sbjct: 156 QKDPKTRLQEYLQHHHLPLPIYCINQVQGQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAE 215
Query: 223 REAALNMLKFL 233
++AA N LKFL
Sbjct: 216 QDAAENALKFL 226
>gi|212291457|gb|ACJ23858.1| double-stranded RNA-dependent protein kinase [Oplegnathus
fasciatus]
Length = 704
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
++ + E R +A KY + G + F R+ L ++ G GK+K+EAKHNA
Sbjct: 7 IARLNEFAQRTRSALKYNDLGCVGPDHIKTFTQRVVLNGKA---YPDGVGKNKREAKHNA 63
Query: 139 AKSVLDQLIGRDDEKLMCQKENLFKVEPNP-----VGQLQEACMTRKWPP----PVYETE 189
AK+ L L+ + E + EN + P P V + C ++ + E
Sbjct: 64 AKNALKCLLENEHEDSIDSTENSAEAPPTPDCQTRVSNINYICWLNEYGQKNRVTIRAVE 123
Query: 190 ETTGLPHERMFTVCAYVNVYKEEG--MGKSKKIAKREAA 226
T P+ C++V +E G++K+ AK EAA
Sbjct: 124 STRPGPNNATL-CCSFVVGGREYPTVTGETKREAKEEAA 161
>gi|307184289|gb|EFN70747.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Camponotus floridanus]
Length = 607
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 32/168 (19%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PVSL+ E +RG + +E++ G + F + ++ + V +G G SKK +K
Sbjct: 226 KSPVSLVHETALKRGLSVSFEVVSESGKPHIRTFMTKCTVGDK----VTVGEGSSKKVSK 281
Query: 136 HNAAKSVLDQL----------------IGRDDEKLMCQKENLFKV--EP----------N 167
AA+ +L++L + R + NL KV EP N
Sbjct: 282 KRAAELMLEELKRLPPLPATIQNRSMRVKRKPPATKKKSRNLIKVYQEPRSESEAAEEVN 341
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
PV +L + ++ PVY + G P R F + + + +G+G
Sbjct: 342 PVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTMGQHSAQGIG 389
>gi|410727093|ref|ZP_11365316.1| ribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410599428|gb|EKQ53981.1| ribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 270
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QELL + G A +YELI+ EG + K+ ++ + +L + GSG SKKEA+ NAAK
Sbjct: 203 LQELLQKDGEVAIQYELIKYEGPPHRR--KFYTNVIIDKKL-MGEGSGYSKKEAEQNAAK 259
Query: 141 SVLDQLIG 148
LD L G
Sbjct: 260 QALDMLEG 267
>gi|381159186|ref|ZP_09868419.1| ribonuclease III [Thiorhodovibrio sp. 970]
gi|380880544|gb|EIC22635.1| ribonuclease III [Thiorhodovibrio sp. 970]
Length = 233
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKE-EGMGKSKKIAKRE 224
+P +LQE+ + P YE E G PH+R F V C + ++ G G S++ A+++
Sbjct: 155 DPKTRLQESLQAAQRELPEYEVIEANGKPHQRHFVVRCLLPDTAEQTRGTGHSRRGAEQQ 214
Query: 225 AALNMLKFLETVPIEIPE 242
AA ML L V ++ P
Sbjct: 215 AAEAMLSLLSGVNLKPPH 232
>gi|325108661|ref|YP_004269729.1| RNAse III [Planctomyces brasiliensis DSM 5305]
gi|324968929|gb|ADY59707.1| RNAse III [Planctomyces brasiliensis DSM 5305]
Length = 335
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV--NVYKEEGMGKSKKIAKRE 224
N QLQ+ + P YE + +G H + F V A V + Y G +KK A+++
Sbjct: 166 NSKSQLQQLTQRTRSQTPTYELLQESGPDHSKCFLVQAIVGPDTYPP-AWGSNKKEAEQK 224
Query: 225 AALNMLKFLETVPIEIP 241
AALN L FL+ PI P
Sbjct: 225 AALNALCFLQGHPIRFP 241
>gi|83593187|ref|YP_426939.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
gi|386349919|ref|YP_006048167.1| RNAse III [Rhodospirillum rubrum F11]
gi|83576101|gb|ABC22652.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
gi|346718355|gb|AEO48370.1| RNAse III [Rhodospirillum rubrum F11]
Length = 221
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE R P P Y E G PH+ MFTV V + E +G SK++A++ AA +L
Sbjct: 158 LQEWAQGRGLPLPTYAVEGRDGPPHKPMFTVSVTVKDNGSESALGASKRLAEQAAAQRLL 217
Query: 231 KFL 233
L
Sbjct: 218 DRL 220
>gi|327276491|ref|XP_003223003.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Anolis
carolinensis]
Length = 488
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV----YKEEGMGKSKKIAKR 223
P L E C K P PVYET E P +R+F C+ V V Y KSKK+A++
Sbjct: 368 PKMHLLEWCRKGKLPQPVYETIER---PRDRLF--CSVVTVAEQKYSSTLWEKSKKLAEQ 422
Query: 224 EAALNMLKFLETVPIEIPEKKQGEDVDEKG 253
AA+ L+ L +PE K+ E+ + G
Sbjct: 423 AAAIACLRAL-----GLPEGKRSEEANHLG 447
>gi|407775064|ref|ZP_11122360.1| RNAse III [Thalassospira profundimaris WP0211]
gi|407282012|gb|EKF07572.1| RNAse III [Thalassospira profundimaris WP0211]
Length = 227
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L RG PKYE++ EG + P+F I LT+ V+ GKSK+EA+ AAK
Sbjct: 162 LQEWLQGRGKPLPKYEMVGREGPAHAPLFT--IELTTGDGDSVS-AEGKSKREAEQLAAK 218
Query: 141 SVLDQL 146
+LD+L
Sbjct: 219 LMLDKL 224
>gi|402756389|ref|ZP_10858645.1| ribonuclease III [Acinetobacter sp. NCTC 7422]
Length = 231
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ C + K G G S++ A++ A
Sbjct: 162 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECDVTGLPKIIGEGSSRRFAEQTA 221
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 222 AAEILKLLE 230
>gi|377831259|ref|ZP_09814240.1| ribonuclease III [Lactobacillus mucosae LM1]
gi|377554937|gb|EHT16635.1| ribonuclease III [Lactobacillus mucosae LM1]
Length = 248
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L R G +Y L+ G N+P FK +S+ E +A G G SKK A+ AA+
Sbjct: 182 LQEFLQRNGDVDIEYHLLSEAGTENDPQFKVSVSVNGEP---IAQGIGSSKKHAEMQAAQ 238
Query: 141 SVLDQL 146
+ L+QL
Sbjct: 239 AALNQL 244
>gi|406035702|ref|ZP_11043066.1| ribonuclease III [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 231
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ C + K G G S++ A++ A
Sbjct: 162 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECDVAGLPKIIGEGSSRRFAEQTA 221
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 222 AAEILKLLE 230
>gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
Length = 238
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREA 225
NP LQE + P P YE + TG H FTV A V Y+ G+S++ A++ A
Sbjct: 168 NPKSALQEWAQGQGRPLPTYEVVQRTGSDHAPTFTVEATVTGYEPARAQGRSRQEAEKAA 227
Query: 226 ALNMLK 231
A+ +LK
Sbjct: 228 AIALLK 233
>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
Length = 249
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE-EGMGKSKKIAKREA 225
+P LQE +R W P+Y+ +G H+ +F V + + G G SKK+A++EA
Sbjct: 165 DPKTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVEVSIQGHGSILGTGSSKKLAEQEA 224
Query: 226 ALNMLKFLETVP 237
A MLK + +P
Sbjct: 225 AKLMLKRITELP 236
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 78 PVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P + +QE + RG T P Y+L+ G ++P+F +S+ + +G+G SKK A+
Sbjct: 166 PKTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVEVSIQGHGSI---LGTGSSKKLAEQ 222
Query: 137 NAAKSVLDQL 146
AAK +L ++
Sbjct: 223 EAAKLMLKRI 232
>gi|17506341|ref|NP_491200.1| Protein D1037.1 [Caenorhabditis elegans]
gi|351060633|emb|CCD68348.1| Protein D1037.1 [Caenorhabditis elegans]
Length = 786
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKRE 224
NP+ + E C R+W PP + EE +G H +MF +N Y+ K KK K
Sbjct: 706 NPISLIMELCAKRRWNPPSFSCEE-SGADHLKMFVWTIVINDVEYRPMCGSKQKKEGKAV 764
Query: 225 AALNMLKFLETVPIE 239
AA L+ L +P++
Sbjct: 765 AAQVALQSLGVLPMD 779
>gi|148228849|ref|NP_001080784.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis]
gi|28302215|gb|AAH46732.1| Stau2-a protein [Xenopus laevis]
Length = 685
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 102/247 (41%), Gaps = 38/247 (15%)
Query: 23 VSLDCNEVKVEENSPSRVLFDNNEIKQIPKVSTNN--LPLEEAARLEVMRLNTGDRTPVS 80
VSL+ + ++ NSP+ L D+ P + T + EA+ + M N ++TP+
Sbjct: 35 VSLNGSATELSTNSPTDQLVDSASPVSTPCIGTEDGKAKFLEASLHDNM-TNPKEKTPMC 93
Query: 81 LMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAA- 139
L+ EL P+Y+L+ G + +F +++L ++ S K+++H AA
Sbjct: 94 LVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTWQ----AESTSIKKSQHAAAS 149
Query: 140 ----KSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLP 195
++ L + R + M + P +L M R+ P +Y + + LP
Sbjct: 150 LALCETTLPKPAARHTKNHMNNNPDSI----TPTVELNGLAM-RRGEPAIYRSLDPKPLP 204
Query: 196 HERM-------------------FTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
+ R F V V + G GK+++ A+ AAL L L
Sbjct: 205 NHRANYNYRGMYHQRYLCPMLKTFYVQLTVGNSEFYGEGKTRQAARHNAALKALHALRNE 264
Query: 237 PIEIPEK 243
P IPE+
Sbjct: 265 P--IPER 269
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +SL+ E+ +R +E+I+ G + F ++++ + A G G SKK
Sbjct: 286 ANKSEISLVFEISLKRNLPLSFEVIKESGPPHMKSFVTKVTVGE----FTAEGEGNSKKL 341
Query: 134 AKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTR 179
AK AA +VL +L I + + + +N+ K P NP+ +L + +
Sbjct: 342 AKRRAAAAVLQELRKLPPLSVIEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAK 401
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETV 236
K P Y G+ R F + V G G +KKIAKR AA M L + +
Sbjct: 402 KEKEPEYVLLSERGIQRRREFIMQVKVGEETATGTGPNKKIAKRNAAEAMLLQLGYKASS 461
Query: 237 PIEIPEKKQGEDVD 250
P+ K+GE+ D
Sbjct: 462 PVVEKSGKRGENPD 475
>gi|332296458|ref|YP_004438381.1| ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
Length = 228
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 80 SLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QEL S G P+Y++I + G + PIF+ ++S+ ++ + +G SKK+A+ A
Sbjct: 155 TVLQELTQSLFGVLPEYKVIDVRGPSHSPIFEVQLSIDNK---FFYTATGSSKKQAQSEA 211
Query: 139 AKSVLDQL--IGRDD 151
AK L+ L I RD+
Sbjct: 212 AKKALNDLRNIRRDN 226
>gi|307545610|ref|YP_003898089.1| ribonuclease III [Halomonas elongata DSM 2581]
gi|307217634|emb|CBV42904.1| ribonuclease III [Halomonas elongata DSM 2581]
Length = 229
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIF--KYRISLTSES 119
A RLE + L + P + +QE L R A P+YE+I +EG + F + + + E
Sbjct: 140 AERLETINLQDTQKDPKTRLQEFLQSRQVALPRYEVISVEGEAHAQTFTVECHVEMLDEH 199
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQL 146
L G G S++ A+ AA+ L QL
Sbjct: 200 TL----GIGSSRRHAEQQAAEQALSQL 222
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 160 NLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKS 217
NL + +P +LQE +R+ P YE G H + FTV +V + E G+G S
Sbjct: 147 NLQDTQKDPKTRLQEFLQSRQVALPRYEVISVEGEAHAQTFTVECHVEMLDEHTLGIGSS 206
Query: 218 KKIAKREAALNMLKFLE 234
++ A+++AA L LE
Sbjct: 207 RRHAEQQAAEQALSQLE 223
>gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82]
gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164]
gi|421465513|ref|ZP_15914200.1| ribonuclease III [Acinetobacter radioresistens WC-A-157]
gi|421854666|ref|ZP_16287051.1| ribonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82]
gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164]
gi|400203780|gb|EJO34765.1| ribonuclease III [Acinetobacter radioresistens WC-A-157]
gi|403189681|dbj|GAB73252.1| ribonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 230
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ C+ ++ K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECSVDSLPKFIGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>gi|195435714|ref|XP_002065824.1| GK18621 [Drosophila willistoni]
gi|194161909|gb|EDW76810.1| GK18621 [Drosophila willistoni]
Length = 297
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 38/187 (20%)
Query: 93 PKYELIQIEGAINEPIFKYRISLTSESRLYVAI--------GSGKSKKEAKHNAAKSVLD 144
P +L++ IN ++ S ES + GSG SK +A+ AA ++L
Sbjct: 6 PMTDLLEFCRKINCGRLEFNYSKGEESSFNCKVTLLDMEANGSGGSKDDAREVAAFNLLR 65
Query: 145 QLIGRDDEKLMCQKENLFKVEP------------NPVGQLQEACMTRKWPPPVYETEETT 192
+L DE C +L K+E N +L + C + P P++E E +
Sbjct: 66 KL----DELPECG--DLVKIEDKGESNELIDPNRNMFKELWDFCNSHDMPSPIFEMVEKS 119
Query: 193 GLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK 252
P+ F C + K G+ KK A + AA +L + +D D+
Sbjct: 120 RNPNAPKFVACCTLASIKRYGISDKKKEAHQRAASAILSVV------------SKDADKL 167
Query: 253 GESNGLK 259
+SNG+K
Sbjct: 168 PKSNGVK 174
>gi|262375526|ref|ZP_06068759.1| ribonuclease III [Acinetobacter lwoffii SH145]
gi|262309780|gb|EEY90910.1| ribonuclease III [Acinetobacter lwoffii SH145]
gi|407008100|gb|EKE23572.1| hypothetical protein ACD_6C00421G0002 [uncultured bacterium]
Length = 232
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ C + +G G S++ A++
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECQIAGLPTMQGEGASRRFAEQAV 220
Query: 226 ALNMLKFLE 234
A ++LK LE
Sbjct: 221 AADILKLLE 229
>gi|359786279|ref|ZP_09289415.1| ribonuclease III [Halomonas sp. GFAJ-1]
gi|359296393|gb|EHK60645.1| ribonuclease III [Halomonas sp. GFAJ-1]
Length = 230
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 160 NLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKS 217
+L + +P +LQE +R+ P YE G H + FTV Y+++ E G G S
Sbjct: 147 SLQDTQKDPKTRLQEFLQSRQAALPRYEVVSVKGEAHAQTFTVECYIDLLSEHTTGKGPS 206
Query: 218 KKIAKREAALNMLKFLETVP 237
++ A+++AA L LE P
Sbjct: 207 RRHAEQQAAEEALSHLEKNP 226
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYR--ISLTSES 119
A RLE + L + P + +QE L R A P+YE++ ++G + F I L SE
Sbjct: 140 AERLESISLQDTQKDPKTRLQEFLQSRQAALPRYEVVSVKGEAHAQTFTVECYIDLLSEH 199
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVLDQL 146
G G S++ A+ AA+ L L
Sbjct: 200 ----TTGKGPSRRHAEQQAAEEALSHL 222
>gi|92113755|ref|YP_573683.1| ribonuclease III [Chromohalobacter salexigens DSM 3043]
gi|91796845|gb|ABE58984.1| RNAse III [Chromohalobacter salexigens DSM 3043]
Length = 226
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRL 121
A RLE + L + P + +QE L SR+ P+YE++ +EG + +F I E
Sbjct: 136 ATRLEAIDLQDNQKDPKTRLQEFLQSRQAALPRYEVVSVEGEAHAQVFT--IECHVEMLE 193
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL 146
+G G S++ A+ AA+ L+ L
Sbjct: 194 DHTLGVGSSRRHAEQQAAEKALETL 218
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+ +P +LQE +R+ P YE G H ++FT+ +V + ++ G+G S++ A+
Sbjct: 148 QKDPKTRLQEFLQSRQAALPRYEVVSVEGEAHAQVFTIECHVEMLEDHTLGVGSSRRHAE 207
Query: 223 REAALNMLKFLE 234
++AA L+ LE
Sbjct: 208 QQAAEKALETLE 219
>gi|268576457|ref|XP_002643208.1| Hypothetical protein CBG08071 [Caenorhabditis briggsae]
Length = 663
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 185 VYETEETTGLPHERMFTV-CAYVNVYKEE-----GMGKSKKIAKREAALNMLKFLE 234
V+ET + G PH+R++ V CA+V+ KE G GK KK+A++EA +LK E
Sbjct: 269 VFETLKEEGPPHDRVYVVRCAFVSSNKEVKAEAIGKGKKKKVAQQEACTQLLKNAE 324
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 36/215 (16%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVA--IGSGKSKKEAKHNAAKSVLDQL------ 146
+E ++ EG ++ ++ R + S ++ A IG GK KK A+ A +L
Sbjct: 270 FETLKEEGPPHDRVYVVRCAFVSSNKEVKAEAIGKGKKKKVAQQEACTQLLKNAEHLSPQ 329
Query: 147 ---------IGRDDEKLMC-----QKENLFK---VEP------NPVGQLQEACMTRKWPP 183
+ R +KL +++ + K ++P NPV +L + +
Sbjct: 330 TNPVSVATNVCRTQKKLASIHREPKRKTIVKDKKMDPHYGHQINPVSRLIQVTQAKSRHH 389
Query: 184 PVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV-PIEIPE 242
P +E G+ + F + A EG G +K++AKR AA ML + V P+ P
Sbjct: 390 PTFELLSENGVSKYKEFVIQAKYGEIVCEGKGPNKRLAKRAAAEEMLDLIGFVKPLPPP- 448
Query: 243 KKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQ 277
G+ + +K HT + + P K +++
Sbjct: 449 ---GKSLLKKNPDADYSHTQITHWTGPPSPKGVEE 480
>gi|192359963|ref|YP_001983041.1| ribonuclease III [Cellvibrio japonicus Ueda107]
gi|190686128|gb|ACE83806.1| ribonuclease III [Cellvibrio japonicus Ueda107]
Length = 225
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKKIAKRE 224
+P +LQE ++ P P Y E G H ++FT+ +V + K+ + S++ A+++
Sbjct: 155 DPKSRLQEYLQAQRQPLPEYRVVEVGGEGHAQVFTIECHVAIAKQSTQAQASSRREAEKQ 214
Query: 225 AALNMLKFL 233
AA MLK L
Sbjct: 215 AAAAMLKLL 223
>gi|225850066|ref|YP_002730300.1| ribonuclease III [Persephonella marina EX-H1]
gi|225645108|gb|ACO03294.1| ribonuclease III [Persephonella marina EX-H1]
Length = 249
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 21 STVSLDCN-EVKVEENSPSRVLFDNNEIKQIPKVSTNNLPLEEAARLEVMRLNTGDRTPV 79
V +DC+ ++K+ +R F + I+ I K N+P + + L++M
Sbjct: 134 GAVYVDCDYDIKIPREIFNR-FFKDYLIESIKK---GNIPRDYKSILQIM---------- 179
Query: 80 SLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAA 139
Q L G PKY ++ EG +E IF S+ + R + G+GKSKKEA+ AA
Sbjct: 180 --TQRLF---GVVPKYSMVSAEGPEHEKIFTMECSVDNVVRTF---GTGKSKKEAETEAA 231
Query: 140 KSVLDQLIGRDDEK 153
K L R +K
Sbjct: 232 KKAYFYLKERYKDK 245
>gi|426401910|ref|YP_007020882.1| ribonuclease III [Candidatus Endolissoclinum patella L2]
gi|425858578|gb|AFX99614.1| ribonuclease III [Candidatus Endolissoclinum patella L2]
Length = 227
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE-GMGKSKKIAKREA 225
+P LQE K P Y T +G H FTV V+ YK G+G+SK++A++ A
Sbjct: 158 DPKTSLQEWAQGHKLAMPRYTTTTQSGPAHSPQFTVQVIVDGYKPSIGVGRSKRLAEQAA 217
Query: 226 ALNMLKFL 233
A ++K +
Sbjct: 218 AAKLIKLV 225
>gi|445063741|ref|ZP_21375899.1| ribonuclease III [Brachyspira hampsonii 30599]
gi|444504876|gb|ELV05480.1| ribonuclease III [Brachyspira hampsonii 30599]
Length = 245
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 65 RLEVMRLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RL + + D+ ++ QEL+ ++ T+P Y+ + N +FK + + ++
Sbjct: 150 RLGNLDIENFDKDYKTIFQELIQKKHKTSPIYKSYEYYDDNNHEMFKAEVFVNDKN---F 206
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL 146
A+G GKSKKEA+ NAAK LD++
Sbjct: 207 ALGIGKSKKEAETNAAKKALDKI 229
>gi|10834850|gb|AAG22859.1| CCAAT box transcription factor p122 subunit [Xenopus laevis]
Length = 896
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 92/225 (40%), Gaps = 51/225 (22%)
Query: 78 PVSLMQELLSRRGTAP--KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
P +M L+ P +Y+LI G ++ P+F +S+ + + + A SG SKK AK
Sbjct: 400 PPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFT--MSVEVDDKTFEA--SGPSKKTAK 455
Query: 136 HNAAKSVLDQLI----------GRD--------------------DEKLMCQKEN----- 160
+ A VL + G D D + Q E+
Sbjct: 456 LHVAVKVLQDMGLPTGMEEKEEGTDESEQKPVVQTPAQPDDSAEVDSAALDQAESAKQQG 515
Query: 161 --LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
L K NPV +L E K YE TG H++ F + V+ K +G G +K
Sbjct: 516 PILTKHGKNPVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGVKFQGSGSNK 570
Query: 219 KIAKREAALNMLKFL---ETVPIEIPEKKQGEDVDEKGESNGLKH 260
K+AK AAL+ L+ L T+ E P+KK+ + G KH
Sbjct: 571 KVAKAYAALSALEKLFPDYTMYTEAPKKKRPPMMPRGGPKFAGKH 615
>gi|357118476|ref|XP_003560980.1| PREDICTED: ribonuclease 3-like protein 2-like [Brachypodium
distachyon]
Length = 360
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 21/132 (15%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P+S++ EL + G P+++ + +G + + K + V +GS + + AK N
Sbjct: 198 PMSMLNELCQKHGMVPQFKESK-KGEMT--VIKIFVGGA-----LVGMGSSEQRAIAKLN 249
Query: 138 AAKSVLDQLIGRDDEK---------LMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
A++ + +L+G ++ L+ + E+L + + +L E C + WP P+++
Sbjct: 250 ASRDAVSKLLGDPKQQVLTTGVGPGLVVEVEDLRECKQ----KLNEQCSKKHWPKPIFKL 305
Query: 189 EETTGLPHERMF 200
E+ G H+R F
Sbjct: 306 EKEDGPAHDRKF 317
>gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
Length = 524
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV---YKEEGMGKSKKI---AKREA 225
L E C R WP P Y T TG H +MFT A V + K+E +G+ + AK A
Sbjct: 454 LHELCSQRGWPCPDYNTHSETGPAHAKMFTCTASVRIEQGEKQECIGQPRPTINKAKDSA 513
Query: 226 ALNMLKFLE 234
A +++ L+
Sbjct: 514 ARMLMETLQ 522
>gi|241998518|ref|XP_002433902.1| staufen, putative [Ixodes scapularis]
gi|215495661|gb|EEC05302.1| staufen, putative [Ixodes scapularis]
Length = 651
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+ +L + +K P P Y G P +R F + + +G G +KK AKR AA
Sbjct: 371 NPISRLIQIQQAKKEPEPSYSLVSERGDPRQREFVLQCVLGALTTQGAGPNKKTAKRLAA 430
Query: 227 LNMLKFLE-TVPIEIPEKK 244
ML+ L + P ++P +K
Sbjct: 431 EAMLQKLGYSRPPQVPSRK 449
>gi|431892377|gb|ELK02817.1| Double-stranded RNA-specific adenosine deaminase [Pteropus alecto]
Length = 1039
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ PV+ + E + + G++ ++ LI EG ++P F+Y +++ + + S SKK AK
Sbjct: 452 KNPVTTLLECVHKLGSSCEFRLISREGPAHDPKFQYCVAMGTHT---FPTASAPSKKAAK 508
Query: 136 HNAAKSVLDQLIGRDDE-------------------------KLMCQKENLFKVEPNPVG 170
AA+ + L G + K+ E + + NPVG
Sbjct: 509 QMAAEEAMKALHGEATDLSPSENQPGSASSEPFDSLESAVPSKVRRVGELVRYLNANPVG 568
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 569 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 627
Query: 230 LKFL 233
L+ L
Sbjct: 628 LRVL 631
>gi|381151474|ref|ZP_09863343.1| ribonuclease III [Methylomicrobium album BG8]
gi|380883446|gb|EIC29323.1| ribonuclease III [Methylomicrobium album BG8]
Length = 227
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIGR---DDEKLMCQK--ENLFK----------V 164
Y+ +GSG KS + + L+ +IG D C++ +LF+
Sbjct: 92 YLLLGSGELKSGGFRRESILSDALEAVIGALFLDQGIEACKQWIRHLFQEKLQALTLDNW 151
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+ +P QLQE +++ P Y +GLPH++ F V + + K+ G G S+K A+
Sbjct: 152 QKDPKTQLQELMQSKRVELPEYTLLTMSGLPHQQTFKVKCTIPLLKDASIGTGVSRKRAE 211
Query: 223 REAALNMLKFLE 234
+ AA ML+ LE
Sbjct: 212 QAAAEKMLQLLE 223
>gi|290463409|sp|Q91550.2|ILF3A_XENLA RecName: Full=Interleukin enhancer-binding factor 3-A; AltName:
Full=CCAAT box transcription factor subunit; AltName:
Full=Double-stranded RNA-binding protein 4F.1;
Short=DsRNA-binding protein 4F.1
Length = 897
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 92/225 (40%), Gaps = 51/225 (22%)
Query: 78 PVSLMQELLSRRGTAP--KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
P +M L+ P +Y+LI G ++ P+F +S+ + + + A SG SKK AK
Sbjct: 400 PPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFT--MSVEVDDKTFEA--SGPSKKTAK 455
Query: 136 HNAAKSVLDQLI----------GRD--------------------DEKLMCQKEN----- 160
+ A VL + G D D + Q E+
Sbjct: 456 LHVAVKVLQDMGLPTGMEEKEEGTDESEQKPVVQTPAQPDDSAEVDSAALDQAESAKQQG 515
Query: 161 --LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
L K NPV +L E K YE TG H++ F + V+ K +G G +K
Sbjct: 516 PILTKHGKNPVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGVKFQGSGSNK 570
Query: 219 KIAKREAALNMLKFL---ETVPIEIPEKKQGEDVDEKGESNGLKH 260
K+AK AAL+ L+ L T+ E P+KK+ + G KH
Sbjct: 571 KVAKAYAALSALEKLFPDYTMYTEAPKKKRPPMMPRGGPKFAGKH 615
>gi|514259|gb|AAA19960.1| dsRNA-binding protein 4F.1 [Xenopus laevis]
Length = 695
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 92/225 (40%), Gaps = 51/225 (22%)
Query: 78 PVSLMQELLSRRGTAP--KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
P +M L+ P +Y+LI G ++ P+F +S+ + + + A SG SKK AK
Sbjct: 400 PPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFT--MSVEVDDKTFEA--SGPSKKTAK 455
Query: 136 HNAAKSVLDQLI----------GRD--------------------DEKLMCQKEN----- 160
+ A VL + G D D + Q E+
Sbjct: 456 LHVAVKVLQDMGLPTGMEEKEEGTDESEQKPVVQTPAQPDDSAEVDSAALDQAESAKQQG 515
Query: 161 --LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
L K NPV +L E K YE TG H++ F + V+ K +G G +K
Sbjct: 516 PILTKHGKNPVMELNEKRRGLK-----YEMISETGGSHDKRFVMEVEVDGVKFQGSGSNK 570
Query: 219 KIAKREAALNMLKFL---ETVPIEIPEKKQGEDVDEKGESNGLKH 260
K+AK AAL+ L+ L T+ E P+KK+ + G KH
Sbjct: 571 KVAKAYAALSALEKLFPDYTMYTEAPKKKRPPMMPRGGPKFAGKH 615
>gi|338997149|ref|ZP_08635852.1| ribonuclease III [Halomonas sp. TD01]
gi|338765983|gb|EGP20912.1| ribonuclease III [Halomonas sp. TD01]
Length = 230
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 160 NLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKS 217
+L + +P +LQE +R+ P YE G H + FTV Y+++ E G G S
Sbjct: 147 SLQDTQKDPKTRLQEFLQSRQAALPRYEVVSVKGEAHAQTFTVECYIDLLTEHTTGKGPS 206
Query: 218 KKIAKREAALNMLKFLETVP 237
++ A+++AA L LE P
Sbjct: 207 RRHAEQQAAEEALFHLEKTP 226
>gi|33875035|gb|AAH10169.1| STAU1 protein, partial [Homo sapiens]
Length = 196
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 148 GRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTV 202
GR+ E+ ENL K E + Q+ E + R P P+ + +G PH + F
Sbjct: 92 GRESEE-----ENLNKSE---ISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKNFVT 143
Query: 203 CAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
V + EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 144 KVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 178
>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564354|sp|B2A2N1.1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 230
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 80 SLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QEL+ R G PKY++++ G ++ F + + +E V GSGKSKKEA+ NA
Sbjct: 164 TMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNE---VVGRGSGKSKKEAEQNA 220
Query: 139 AKSVLDQL 146
A +L
Sbjct: 221 AHFAFQKL 228
>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 247
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QE++ R G +Y +IQ +G + F R++L E + G GKSKKEA+ A
Sbjct: 178 SQLQEIVQRNGQGSLEYLIIQEKGPAHNREFVSRVALNGE---ILGTGVGKSKKEAEQKA 234
Query: 139 AKSVLDQL 146
AK LD+L
Sbjct: 235 AKEALDEL 242
>gi|121605952|ref|YP_983281.1| ribonuclease III [Polaromonas naphthalenivorans CJ2]
gi|120594921|gb|ABM38360.1| RNAse III [Polaromonas naphthalenivorans CJ2]
Length = 233
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYK-EEGMGKSKKIAKRE 224
+P +LQE RK P+Y+ T G H++ F V C + E G+G S++ ++
Sbjct: 160 DPKTELQEWLQGRKMRLPLYKVVSTMGAAHQQTFEVECEIAEFGRAERGIGVSRRAGEQA 219
Query: 225 AALNMLKFLETV 236
AA ML F++T+
Sbjct: 220 AATAMLLFVKTL 231
>gi|255572781|ref|XP_002527323.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223533323|gb|EEF35075.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 219
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 148 GRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN 207
G D+ L+ + L +V QL E C+ W PP+YE + G H+R+FT V
Sbjct: 112 GSDNRVLVDKSSELKRVSAK--SQLHEICVANNWKPPLYECCKEEGPCHQRLFTFKVIVE 169
Query: 208 VYKEE-------GMGKSKKIA----KREAALNMLKFLETVPIEIPEKKQ 245
+ E G+ K KK E AL LK L PI +KK+
Sbjct: 170 MIGAEYIVLECYGIPKIKKKTAAEHAAEGALWYLKHLGYFPINKWDKKK 218
>gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
Length = 524
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV---YKEEGMGKSKKI---AKREA 225
L E C R WP P Y T TG H +MFT A V + K+E +G+ + AK A
Sbjct: 454 LHELCSQRGWPCPDYNTHSETGPAHAKMFTCTASVRIEQGEKQECIGQPRPTINKAKDSA 513
Query: 226 ALNMLKFLE 234
A +++ L+
Sbjct: 514 ARVLMETLQ 522
>gi|374262718|ref|ZP_09621281.1| ribonuclease III [Legionella drancourtii LLAP12]
gi|363536942|gb|EHL30373.1| ribonuclease III [Legionella drancourtii LLAP12]
Length = 228
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 64 ARLEVMRLNTGDRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLY 122
+RLE LN + + +QE L A P+Y LI++EG +E +F I+ T E+
Sbjct: 141 SRLEDPNLNDCLKDSKTRLQEYLQAEKIALPEYALIKVEGDEHEQLFY--ITCTVEAEKL 198
Query: 123 VAIGSGKSKKEAKHNAAKSVLDQL 146
V G G ++++A+ AAK++L+QL
Sbjct: 199 VTQGEGSNRRKAEQLAAKAMLEQL 222
>gi|373857288|ref|ZP_09600030.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372452938|gb|EHP26407.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 260
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 13/96 (13%)
Query: 70 RLNTGDRTPV----SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVA 124
++N G + V S +QEL+ R GT +Y+++ +G + F R+SL+ + +
Sbjct: 164 KINAGAFSHVMDYKSQLQELVQRDGTGMIEYKVLHEKGPAHNREFVSRVSLSGDE---LG 220
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKEN 160
G+G+SKKEA+ +AA+ L++L +K Q EN
Sbjct: 221 TGTGRSKKEAEQHAAQMALEKL-----KKSFIQNEN 251
>gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510]
gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510]
Length = 261
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE R P P YE E +G HE +F V +V + G G SK+IA+++AA +L
Sbjct: 193 LQEWAQGRGKPLPRYELTERSGPAHEPLFVVAVHVAGMDPVSGSGSSKRIAEKKAASALL 252
Query: 231 K 231
+
Sbjct: 253 R 253
>gi|417515465|gb|JAA53561.1| adenosine deaminase, RNA-specific [Sus scrofa]
Length = 1145
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ PV+ + E + + G++ ++ L+ EG ++P F+Y +++ + + S SKK AK
Sbjct: 558 KNPVTTLLECVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHT---FPTASAPSKKAAK 614
Query: 136 HNAAKSVLDQL-------IGRDDEKLMCQKENLFKVEP------------------NPVG 170
AA+ + L + D++ E+ +E NPVG
Sbjct: 615 QLAAEEAMKALHREATSSLSSDNQPGSTNSESFDNLESMMPNKVRRVGELVRYLNTNPVG 674
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 675 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 733
Query: 230 LKFL 233
L+ L
Sbjct: 734 LRVL 737
>gi|339445268|ref|YP_004711272.1| dsRNA-specific ribonuclease [Eggerthella sp. YY7918]
gi|338905020|dbj|BAK44871.1| dsRNA-specific ribonuclease [Eggerthella sp. YY7918]
Length = 312
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P S +QE L G P Y+L++ +G ++ F ++ ++ +A G+G++KKEA+
Sbjct: 185 PKSALQEKLQEDGITPTYKLVETQGPPHDRTFVAQVFAGTKG---LARGTGRTKKEAESQ 241
Query: 138 AAKSVLDQL 146
AAKS L L
Sbjct: 242 AAKSTLASL 250
>gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase,
partial [Sus scrofa]
Length = 1171
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ PV+ + E + + G++ ++ L+ EG ++P F+Y +++ + + S SKK AK
Sbjct: 584 KNPVTTLLECVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHT---FPTASAPSKKAAK 640
Query: 136 HNAAKSVLDQL-------IGRDDEKLMCQKENLFKVEP------------------NPVG 170
AA+ + L + D++ E+ +E NPVG
Sbjct: 641 QLAAEEAMKALHREATSSLSSDNQPGSTNSESFDNLESMMPNKVRRVGELVRYLNTNPVG 700
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 701 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 759
Query: 230 LKFL 233
L+ L
Sbjct: 760 LRVL 763
>gi|73919461|sp|Q5M7M7.1|STAU2_XENTR RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
gi|56788853|gb|AAH88555.1| staufen, RNA binding protein, homolog 2 [Xenopus (Silurana)
tropicalis]
Length = 624
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 21/202 (10%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +SL+ E+ +R + +E+I+ G + F R+++ + A G G SKK
Sbjct: 222 ANKSEISLVFEISLKRNLSLSFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSKKL 277
Query: 134 AKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTR 179
AK AA +VL +L I + + + +N+ K P NP+ +L + +
Sbjct: 278 AKRRAAAAVLQELRKLPPLPVIEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAK 337
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETV 236
K P Y G+ R F + V G G +KK AKR AA M L + +
Sbjct: 338 KEKEPEYVLLSERGIQRRREFVMQVKVGEETATGTGPNKKTAKRNAAEAMLLQLGYKASS 397
Query: 237 PIEIPEKKQGEDVDEKGESNGL 258
P+ K+GE+ D +++G+
Sbjct: 398 PVVEKTGKRGENPDWDEQNSGI 419
>gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
Length = 252
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE TR P YE E +G H+ +FTV + +V +G G+S++IA++EAA +L
Sbjct: 183 LQEWAHTRGPVTPQYEIVERSGPDHDPLFTVRVSIPDVAPADGQGRSRRIAEQEAATAVL 242
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 76 RTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
R + +QE RG P+YE+++ G ++P+F R+S+ + A G G+S++ A
Sbjct: 177 RDAKTALQEWAHTRGPVTPQYEIVERSGPDHDPLFTVRVSIPD---VAPADGQGRSRRIA 233
Query: 135 KHNAAKSVL 143
+ AA +VL
Sbjct: 234 EQEAATAVL 242
>gi|257063721|ref|YP_003143393.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
gi|256791374|gb|ACV22044.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
Length = 300
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 62 EAARLEVMR---------LNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYR 112
E AR VM+ L T P S +QE L G P Y+L++ +G ++ F
Sbjct: 141 EGARSFVMKTLVPRMSRELATEPENPKSALQEKLQEEGITPTYKLVETQGPPHDRTF--- 197
Query: 113 ISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-IGRDDEKL 154
+S +A G G++KKE++ AAK+ L+ GRD +++
Sbjct: 198 VSQVFAGMKALASGMGRTKKESESQAAKAALELFNFGRDKDEV 240
>gi|350606338|ref|NP_001011376.2| double-stranded RNA-binding protein Staufen homolog 2 [Xenopus
(Silurana) tropicalis]
Length = 706
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 21/202 (10%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +SL+ E+ +R + +E+I+ G + F R+++ + A G G SKK
Sbjct: 304 ANKSEISLVFEISLKRNLSLSFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSKKL 359
Query: 134 AKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTR 179
AK AA +VL +L I + + + +N+ K P NP+ +L + +
Sbjct: 360 AKRRAAAAVLQELRKLPPLPVIEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAK 419
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETV 236
K P Y G+ R F + V G G +KK AKR AA M L + +
Sbjct: 420 KEKEPEYVLLSERGIQRRREFVMQVKVGEETATGTGPNKKTAKRNAAEAMLLQLGYKASS 479
Query: 237 PIEIPEKKQGEDVDEKGESNGL 258
P+ K+GE+ D +++G+
Sbjct: 480 PVVEKTGKRGENPDWDEQNSGI 501
>gi|220934266|ref|YP_002513165.1| Ribonuclease III [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995576|gb|ACL72178.1| Ribonuclease III [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 228
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
+P +LQE R PVYE TG HE+ F V + G G S++ A++ AA
Sbjct: 152 DPKTRLQEWLQGRSRELPVYEVTSVTGKAHEQRFRALCRVGDQEYPGEGTSRRRAEQAAA 211
Query: 227 LNMLKFLET 235
LK LET
Sbjct: 212 ECALKALET 220
>gi|365845433|ref|ZP_09386204.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|373118094|ref|ZP_09532230.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
gi|364560272|gb|EHM38214.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|371667658|gb|EHO32777.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
Length = 225
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 73 TGDRTPVSLMQELLSRR-GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
+ R + +QEL+ R G Y+LI EG + IF + L + + G G+SK
Sbjct: 150 SASRDYKTALQELVQRESGQVLGYQLIGAEGPDHAKIFSVEVDLNG---IPIGQGRGRSK 206
Query: 132 KEAKHNAAKSVLDQL 146
KEA+ NAAK+ +++L
Sbjct: 207 KEAEQNAAKAAIEKL 221
>gi|15079052|ref|NP_149803.1| 340R [Invertebrate iridescent virus 6]
gi|82012085|sp|Q91FI4.1|340R_IIV6 RecName: Full=DRBM domain-containing protein 340R
gi|15042421|gb|AAK82201.1|AF303741_342 340R [Invertebrate iridescent virus 6]
Length = 173
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 152 EKLMCQK--ENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
E+++C K +N+ + N +G L E C K+ PP Y T G H F + + Y
Sbjct: 13 EEILCTKKEQNIDMEKFNSIGFLNEFCHKNKYKPPSYTTLNQNGPDHSPTFNIECRIVDY 72
Query: 210 KEE----GMGKSKKIAKREAALNMLKFLETVPIEIPEK 243
K G G S K AK+ AA +K L + + K
Sbjct: 73 KPNGKFIGSGLSMKEAKKNAAFKTIKELNLLTLNTENK 110
>gi|406959925|gb|EKD87146.1| hypothetical protein ACD_37C00027G0006 [uncultured bacterium]
Length = 229
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKRE 224
+P LQE + K P Y GLPH ++FTV A+V +Y +G GKSK+ A+
Sbjct: 160 DPKSLLQEYIQSHKKSSPKYVVLLEEGLPHAKLFTVGAFVGEKLYG-KGEGKSKQEAEEI 218
Query: 225 AALNML 230
AA N L
Sbjct: 219 AASNAL 224
>gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis]
gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis]
Length = 851
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 49 QIPKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSR-RGTAPKYELIQIEGAINEP 107
Q P+ N A + L D+ PV ++ EL S+ + T P+Y L G +
Sbjct: 753 QAPRAPKNT----SATNIAQAALTAHDKHPVCVLNELTSKNKWTPPQYTLRDDSGPSHSR 808
Query: 108 IFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146
+F++ + + ++ Y SKKEAK NAAK L L
Sbjct: 809 MFRFSVEINGQT--YTPAQGCNSKKEAKLNAAKLCLRAL 845
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKRE 224
+PV L E KW PP Y + +G H RMF +N Y SKK AK
Sbjct: 777 HPVCVLNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEAKLN 836
Query: 225 AALNMLKFLETVP 237
AA L+ L +P
Sbjct: 837 AAKLCLRALGILP 849
>gi|195108151|ref|XP_001998656.1| GI24090 [Drosophila mojavensis]
gi|193915250|gb|EDW14117.1| GI24090 [Drosophila mojavensis]
Length = 873
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 39 RVLFDNNEIKQIPKVSTNNLPLEEAARLEVMR--LNTGDRTPVSLMQELLSR-RGTAPKY 95
R L +IKQ P P + + + + L D+ PV ++ EL S+ + T P+Y
Sbjct: 759 RGLVSREDIKQQPARPQGTRPPKNTSATNIAQAALTAQDKHPVCVLNELTSKNKWTPPQY 818
Query: 96 ELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146
L G + +F + + + ++ Y + +KKEAK NAAK L L
Sbjct: 819 TLKDDSGPSHSRMFLFSVEINGQT--YTPAQACNNKKEAKLNAAKLCLRAL 867
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKRE 224
+PV L E KW PP Y ++ +G H RMF +N Y +KK AK
Sbjct: 799 HPVCVLNELTSKNKWTPPQYTLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEAKLN 858
Query: 225 AALNMLKFLETVP 237
AA L+ L +P
Sbjct: 859 AAKLCLRALGILP 871
>gi|383759948|ref|YP_005438934.1| ribonuclease III [Rubrivivax gelatinosus IL144]
gi|381380618|dbj|BAL97435.1| ribonuclease III [Rubrivivax gelatinosus IL144]
Length = 234
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMGKSKKIAKREAALN 228
+LQE R+ P P Y T G H + F V CA + E G G+S++ A++EAA
Sbjct: 158 ELQEWLQARRLPVPAYRIVATRGEKHAQTFEVECAVATLGLAERGEGRSRRTAEQEAARR 217
Query: 229 MLKFLET 235
+L+ L+
Sbjct: 218 LLEGLKA 224
>gi|372489094|ref|YP_005028659.1| ribonuclease III [Dechlorosoma suillum PS]
gi|359355647|gb|AEV26818.1| ribonuclease III [Dechlorosoma suillum PS]
Length = 230
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV--NVYKEEGMGKSKKIAKRE 224
+P +LQE R+ P PVY T G H + F V V + EG G S++ A++E
Sbjct: 160 DPKTRLQEYLQARRQPLPVYTLAATDGQAHLQQFRVLCEVASAALQTEGQGSSRRAAEQE 219
Query: 225 AALNMLKFLET 235
AA L+ L+
Sbjct: 220 AASRALEKLKA 230
>gi|262373078|ref|ZP_06066357.1| ribonuclease III [Acinetobacter junii SH205]
gi|262313103|gb|EEY94188.1| ribonuclease III [Acinetobacter junii SH205]
Length = 232
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ C + K G G S++ A++ A
Sbjct: 163 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECNVEGMPKFIGEGSSRRFAEQTA 222
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 223 AAEILKLLE 231
>gi|339500023|ref|YP_004698058.1| ribonuclease 3 [Spirochaeta caldaria DSM 7334]
gi|338834372|gb|AEJ19550.1| Ribonuclease 3 [Spirochaeta caldaria DSM 7334]
Length = 249
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIAKREAA 226
LQE C P Y + TG HERMF V +VN V G+GK+KK A++EAA
Sbjct: 183 LQEKCQQLYKNYPTYTLLKRTGPDHERMFWVEVHVNGVAYGPGIGKNKKEAEQEAA 238
>gi|71892313|ref|YP_278047.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
gi|90101614|sp|Q492D1.1|RNC_BLOPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71796419|gb|AAZ41170.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 229
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKK 219
+ + +P +LQE R+ P PVY + G H ++FT+ V+ + G G S++
Sbjct: 150 YDTQKDPKTRLQEYMQRRRLPLPVYWINQIIGEAHNQIFTINCQVSELTQPIIGCGSSRR 209
Query: 220 IAKREAALNMLKFLE 234
A++ AA +L+ LE
Sbjct: 210 RAEQNAAAKVLEALE 224
>gi|147906306|ref|NP_001083930.1| interleukin enhancer-binding factor 3-A [Xenopus laevis]
gi|83405079|gb|AAI10712.1| CBTF122 protein [Xenopus laevis]
Length = 902
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 51/225 (22%)
Query: 78 PVSLMQELLSRRGTAP--KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
P +M L+ P +Y+LI G ++ P+F +S+ + + + A SG SKK AK
Sbjct: 400 PPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFT--MSVEVDDKTFEA--SGPSKKTAK 455
Query: 136 HNAAKSVLDQLI----------GRD--------------------DEKLMCQKENLFKVE 165
+ A VL + G D D + Q E+ +
Sbjct: 456 LHVAVKVLQDMGLPTGMEEKEEGTDESEQKPVVQTPAQPDDSAEVDSAALDQAESAKQQG 515
Query: 166 P-------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
P NPV +L E K YE TG H++ F + V+ K +G G +K
Sbjct: 516 PILTKHGKNPVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGVKFQGSGSNK 570
Query: 219 KIAKREAALNMLKFL---ETVPIEIPEKKQGEDVDEKGESNGLKH 260
K+AK AAL+ L+ L T+ E P+KK+ + G KH
Sbjct: 571 KVAKAYAALSALEKLFPDYTMYTEAPKKKRPPMMPRGGPKFAGKH 615
>gi|374292002|ref|YP_005039037.1| RNase III [Azospirillum lipoferum 4B]
gi|357423941|emb|CBS86804.1| RNase III [Azospirillum lipoferum 4B]
Length = 261
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 163 KVEPNPVGQ---LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSK 218
K P P+ LQE R P P YE E +G HE +F V +V + G G SK
Sbjct: 181 KATPPPLDSKTTLQEWAQGRGKPLPRYELIERSGPAHEPLFVVAVHVAGMDPVNGSGSSK 240
Query: 219 KIAKREAALNMLK 231
+IA+++AA +L+
Sbjct: 241 RIAEKKAASALLR 253
>gi|375089330|ref|ZP_09735657.1| ribonuclease III [Facklamia languida CCUG 37842]
gi|374567106|gb|EHR38337.1| ribonuclease III [Facklamia languida CCUG 37842]
Length = 231
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 26/109 (23%)
Query: 38 SRVLFDNNEIKQIPKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAP-KYE 96
SRVLFD+++ E++RL D + QE + +G+ +Y
Sbjct: 143 SRVLFDHHQ--------------------EILRLTNQDYK--TQFQEWVQAKGSVKIEYR 180
Query: 97 LIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQ 145
L+ G ++ F + L + +A GSGKSKK+A+ +AAK LDQ
Sbjct: 181 LLDQTGPAHDRCFTSGLFLNGQQ---IAQGSGKSKKQAEMHAAKQALDQ 226
>gi|375107380|ref|ZP_09753641.1| ribonuclease III [Burkholderiales bacterium JOSHI_001]
gi|374668111|gb|EHR72896.1| ribonuclease III [Burkholderiales bacterium JOSHI_001]
Length = 234
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMGKSKKIAKREAALN 228
+LQE RK P Y T G H + F V C + E G GKS++ A++EAA
Sbjct: 158 ELQEWLQARKLAVPAYRIVATHGQAHAQTFEVQCQVATLGLAELGQGKSRRTAEQEAARR 217
Query: 229 MLKFLET 235
ML L+
Sbjct: 218 MLDLLKA 224
>gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus
norvegicus]
Length = 634
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 48 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMA 107
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 108 AEEAMKALQEEAANSADDQSGGANTDSLDESVAPNKIRRIGELVRYLNTNPVGGLLEYAR 167
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 168 SHGFAAE-FKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223
>gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus]
Length = 705
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 119 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 178
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 179 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 238
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 239 SHGFAAE-FKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 294
>gi|388495198|gb|AFK35665.1| unknown [Medicago truncatula]
Length = 344
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
PV+++ E+ + G + I + N K S+ + L+ A+ S K AK +
Sbjct: 182 PVTMLYEICHKNGKK-----VDIRHSRNGD--KSTASVYVDGELF-AVASSDQKDIAKLD 233
Query: 138 AAKSVLDQLIGRDDEKLM---------CQK-ENLFKVEPNPVGQLQEACMTRKWPPPVYE 187
AAKS + +L E+++ C+ + F++E P +L C +KWP PVY
Sbjct: 234 AAKSAVQKL-----ERVLPITTTTPDNCKGLDGTFEIE-EPKQKLYALCGRKKWPTPVYS 287
Query: 188 TEETTGLPHERMFTVCAYV 206
E G P ++F V
Sbjct: 288 IERDEGTPQNKIFVTSVQV 306
>gi|332525373|ref|ZP_08401536.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
gi|332108645|gb|EGJ09869.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
Length = 241
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMGKSKKIAKREAALN 228
+LQE R+ P P Y T G H + F V CA + E G G+S++ A++EAA
Sbjct: 158 ELQEWLQARRLPVPAYRIVATRGEKHAQTFEVECAVATLGLAERGEGRSRRTAEQEAARR 217
Query: 229 MLKFLET 235
+L+ L+
Sbjct: 218 LLEGLKA 224
>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
Length = 245
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 70 RLNTGDRTPV----SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVA 124
++N G + V S +QEL+ R G+ +Y+++Q +G + F R++L + +
Sbjct: 163 KINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNG---VALG 219
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
+GSGKSKKEA+ AA L +L
Sbjct: 220 LGSGKSKKEAEQQAASEALKKL 241
>gi|354478896|ref|XP_003501650.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Cricetulus griseus]
gi|344242007|gb|EGV98110.1| Double-stranded RNA-specific adenosine deaminase [Cricetulus
griseus]
Length = 1174
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 46 EIKQIPKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAIN 105
E+ P + P E L +G ++PV+ + E + + G + ++ L+ EG +
Sbjct: 533 ELSNCPMDEDSEKPAESQTSSSSATLFSG-KSPVTTLLECMHKLGNSCEFRLLSKEGPAH 591
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI-----GRDDEKLMCQKEN 160
+P F+Y +++ +++ V S SKK AK AA+ + L DD+ E+
Sbjct: 592 DPKFQYCVAVGAQTFPTV---SAPSKKVAKQMAAEEAMKALQEEAANSADDQSGGVNTES 648
Query: 161 LFK-VEP---------------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
L + V P NPVG L E + + ++ + +G PHE F A
Sbjct: 649 LDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLIDQSGPPHEPKFVYQA 707
Query: 205 YVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
V + SKK K++AA L+ L
Sbjct: 708 KVGGRWFPAVCAHSKKQGKQDAADAALRVL 737
>gi|333901418|ref|YP_004475291.1| ribonuclease 3 [Pseudomonas fulva 12-X]
gi|333116683|gb|AEF23197.1| Ribonuclease 3 [Pseudomonas fulva 12-X]
Length = 229
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 19/124 (15%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIGR---------DDEKLMCQKEN------LFKV 164
Y+ +GSG KS + + L+ LIG E+++ N L
Sbjct: 92 YLRLGSGELKSGGFRRDSILADALEALIGAIYLDAGMDVARERVLAWLTNELDGLTLVDT 151
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+P +LQE +R P YE + G PH R F V VN+ ++ G G S++IA+
Sbjct: 152 NKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFVVECQVNLLNDKTLGQGASRRIAE 211
Query: 223 REAA 226
+ AA
Sbjct: 212 QVAA 215
>gi|357464753|ref|XP_003602658.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355491706|gb|AES72909.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 344
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
PV+++ E+ + G + I + N K S+ + L+ A+ S K AK +
Sbjct: 182 PVTMLYEICHKNGKK-----VDIRHSRNGD--KSTASVYVDGELF-AVASSDQKDIAKLD 233
Query: 138 AAKSVLDQLIGRDDEKLM---------CQK-ENLFKVEPNPVGQLQEACMTRKWPPPVYE 187
AAKS + +L E+++ C+ + F++E P +L C +KWP PVY
Sbjct: 234 AAKSAVQKL-----ERVLPITTTTPDNCKGLDGTFEIE-EPKQKLYALCGRKKWPTPVYS 287
Query: 188 TEETTGLPHERMFTVCAYV 206
E G P ++F V
Sbjct: 288 IERDEGTPQNKIFVTSVQV 306
>gi|345304499|ref|YP_004826401.1| ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
gi|345113732|gb|AEN74564.1| Ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
Length = 260
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
L E R WP P Y G H R FTV A++ N G SKK A+++AA L
Sbjct: 187 LLEFAQARGWPQPRYRVVAEEGPSHARTFTVEAWIGNRRLGRGTAGSKKQAEQQAAREAL 246
Query: 231 KFLETV 236
L+T
Sbjct: 247 ARLQTA 252
>gi|258544604|ref|ZP_05704838.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
gi|258520146|gb|EEV89005.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
Length = 221
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
QLQE R P P Y+ E +G H R F + A Y+ G S+K A+++AA ++L
Sbjct: 155 QLQEYLQGRGLPLPDYQITEESGPEHAREFQIEATSGDYRAIAHGSSRKKAEQQAAADLL 214
>gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009]
gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1]
gi|81562548|sp|Q6N6C1.1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009]
gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1]
Length = 272
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREA 225
+P LQE R P PVY E TG H+ F V + + EG+G SK+ A++ A
Sbjct: 196 DPKTVLQEWAQARGLPTPVYREVERTGPHHDPQFRVAVILPGLEPAEGLGGSKRAAEKVA 255
Query: 226 ALNML 230
A ML
Sbjct: 256 ASAML 260
>gi|357403940|ref|YP_004915864.1| ribonuclease 3 [Methylomicrobium alcaliphilum 20Z]
gi|351716605|emb|CCE22267.1| Ribonuclease 3 [Methylomicrobium alcaliphilum 20Z]
Length = 227
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 65 RLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYR--ISLTSESRL 121
+L+ + L+ + P + +QEL+ S++ P Y LI + G +E FK + I L+ +S
Sbjct: 142 KLDSLSLDNWQKDPKTQLQELMQSKKLDLPDYTLITMSGLPHEQTFKVKCTIPLSDKS-- 199
Query: 122 YVAIGSGKSKKEAKHNAAKSVL 143
IGSG S+K+A+ +AA+ +L
Sbjct: 200 --CIGSGVSRKKAEQDAAEQML 219
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+ +P QLQE ++K P Y +GLPHE+ F V + + + G G S+K A+
Sbjct: 152 QKDPKTQLQELMQSKKLDLPDYTLITMSGLPHEQTFKVKCTIPLSDKSCIGSGVSRKKAE 211
Query: 223 REAALNMLKFLE 234
++AA ML L+
Sbjct: 212 QDAAEQMLALLK 223
>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
Length = 221
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 78 PVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P + +QE RG P YEL++ G + P F+ R+++ + A G +K+EA+
Sbjct: 155 PKTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRA----AEGLAGTKREAEQ 210
Query: 137 NAAKSVLDQL 146
NAA+ +L+QL
Sbjct: 211 NAARDLLEQL 220
>gi|354478898|ref|XP_003501651.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Cricetulus griseus]
Length = 1148
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 46 EIKQIPKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAIN 105
E+ P + P E L +G ++PV+ + E + + G + ++ L+ EG +
Sbjct: 533 ELSNCPMDEDSEKPAESQTSSSSATLFSG-KSPVTTLLECMHKLGNSCEFRLLSKEGPAH 591
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI-----GRDDEKLMCQKEN 160
+P F+Y +++ +++ V S SKK AK AA+ + L DD+ E+
Sbjct: 592 DPKFQYCVAVGAQTFPTV---SAPSKKVAKQMAAEEAMKALQEEAANSADDQSGGVNTES 648
Query: 161 LFK-VEP---------------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
L + V P NPVG L E + + ++ + +G PHE F A
Sbjct: 649 LDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLIDQSGPPHEPKFVYQA 707
Query: 205 YVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
V + SKK K++AA L+ L
Sbjct: 708 KVGGRWFPAVCAHSKKQGKQDAADAALRVL 737
>gi|320547232|ref|ZP_08041525.1| ribonuclease III [Streptococcus equinus ATCC 9812]
gi|320448120|gb|EFW88870.1| ribonuclease III [Streptococcus equinus ATCC 9812]
Length = 228
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 186 YETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIAKREAALNMLKFLE 234
Y +G H ++F V YVN K +G+GKSKK+A+++AA N L L+
Sbjct: 179 YRVSNESGPAHAKVFEVTVYVNDEAKSQGIGKSKKLAEQDAAKNALALLQ 228
>gi|308271416|emb|CBX28024.1| Ribonuclease 3 [uncultured Desulfobacterium sp.]
Length = 220
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
++QE T + P Y E +G H+++F V +N + G GKSKK+A+++AA
Sbjct: 147 KVQELVQTGQEIKPAYNVVEESGPDHDKIFKVELTINDLQTVGYGKSKKLAEQDAA 202
>gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus]
Length = 930
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 377
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 378 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 437
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 438 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493
>gi|71059975|emb|CAJ18531.1| Adar [Mus musculus]
Length = 1152
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 566 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 625
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 626 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 685
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 686 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus
musculus]
Length = 930
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 377
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 378 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 437
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 438 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493
>gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 1178
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 566 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 625
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 626 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 685
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 686 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
gi|338980768|ref|ZP_08632022.1| Ribonuclease III [Acidiphilium sp. PM]
gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
gi|338208293|gb|EGO96162.1| Ribonuclease III [Acidiphilium sp. PM]
Length = 221
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 78 PVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P + +QE RG P YEL++ G + P F+ R+++ + A G +K+EA+
Sbjct: 155 PKTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRT----AEGLAGTKREAEQ 210
Query: 137 NAAKSVLDQL 146
NAA+ +L+QL
Sbjct: 211 NAARDLLEQL 220
>gi|348579304|ref|XP_003475420.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Cavia porcellus]
Length = 1137
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V S SKK AK
Sbjct: 549 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTV---SAPSKKVAK 605
Query: 136 HNAAKSVLDQLI-----GRDDEKLMCQKENLFKVEP------------------NPVGQL 172
AA+ + L D++ E+L +E NPVG L
Sbjct: 606 QMAAEEAMKALHEEATNAADNQSGDTNSESLDTLESGVPNNIRRIGELVRYLNTNPVGGL 665
Query: 173 QEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLK 231
E + + ++ + +G PHE F A V + SKK K+EAA L+
Sbjct: 666 LEYARSHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALR 724
Query: 232 FL 233
L
Sbjct: 725 VL 726
>gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus
musculus]
gi|38372251|sp|Q99MU3.2|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=RNA adenosine deaminase 1
gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus]
Length = 1178
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 566 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 625
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 626 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 685
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 686 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus]
Length = 1152
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 566 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 625
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 626 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 685
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 686 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|410637343|ref|ZP_11347923.1| ribonuclease III [Glaciecola lipolytica E3]
gi|410142966|dbj|GAC15128.1| ribonuclease III [Glaciecola lipolytica E3]
Length = 225
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAKREAALN 228
QLQE +RK P P YE E G H+++F V V E+ G G S++ A+++AA
Sbjct: 160 QLQEFLQSRKLPLPEYEVVEVLGKDHDQIFIVNCSVEGLSEKVSGRGSSRRKAEQQAAKQ 219
Query: 229 MLKFLE 234
+L+ L+
Sbjct: 220 VLEKLK 225
>gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus]
Length = 700
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 88 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 147
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 148 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 207
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 208 SHGFAAE-FKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263
>gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus
musculus]
gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus]
Length = 1152
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 566 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 625
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 626 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 685
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 686 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 660
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 48 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 107
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 108 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 167
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 168 SHGFAAE-FKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223
>gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus]
Length = 1173
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 566 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 625
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 626 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 685
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 686 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus]
Length = 674
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 88 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 147
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 148 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 207
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 208 SHGFAAE-FKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263
>gi|390341681|ref|XP_787414.3| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Strongylocentrotus purpuratus]
Length = 879
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 43 DNNEIKQIPKVSTNNLPLEEAARLEVMRL-NTGDRTPVSLMQELLSRRGTAPKYELIQIE 101
D+N +P + + A+ E + NT ++T + L+ EL PKYEL+ +
Sbjct: 71 DSNGGVAVPSTGGGDNAAQGPAQNEANNMANTKEKTSMCLLNELARFNKLQPKYELVSEK 130
Query: 102 GAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQ 145
G +E IF + LT + Y + SG S K+A+H AA S L++
Sbjct: 131 GPPHEKIFS--VCLTLGPQKYDS--SGASIKKAQHGAAASALEK 170
>gi|342326246|gb|AEL23038.1| TAR RNA-binding protein 2 [Cherax quadricarinatus]
Length = 111
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 273 KKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSK 332
+K+ +H Q L E L T +L + + L+D+ E + V+FVDIEE S
Sbjct: 34 RKVSHFHKNLKQSPGKKLQE--LQTISLSSLSLNFVQMLQDIGQEANFVVTFVDIEELSV 91
Query: 333 ADGFQSLLQLTTTPVTVFCG 352
Q L+QL+T PV V G
Sbjct: 92 TGQHQCLVQLSTLPVAVCYG 111
>gi|341875742|gb|EGT31677.1| hypothetical protein CAEBREN_29495 [Caenorhabditis brenneri]
Length = 829
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV--YKEEGMGKSKKIAKRE 224
NP+ + E C R+W PP + T E +G H ++F +N Y+ K KK K
Sbjct: 749 NPISLIMELCAKRRWDPPAF-TCEDSGADHMKLFIWTVVINGVEYRPMCGSKQKKEGKAV 807
Query: 225 AALNMLKFLETVP 237
AA L+ L +P
Sbjct: 808 AAQVALQSLGILP 820
>gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus
norvegicus]
Length = 1175
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 563 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMA 622
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 623 AEEAMKALQEEAANSADDQSGGANTDSLDESVAPNKIRRIGELVRYLNTNPVGGLLEYAR 682
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 683 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738
>gi|427441891|ref|ZP_18925469.1| ribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425786917|dbj|GAC46257.1| ribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 198
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QELL + G YELI G N+ +F ++S ++ +A GSG SKK A+ NA
Sbjct: 130 SELQELLQQNGEVEINYELISETGPDNDLVFTVQVSAANQ---VLAKGSGHSKKAAEQNA 186
Query: 139 AKSVLDQLIGRD 150
A L +L R+
Sbjct: 187 ANKALQKLRNRN 198
>gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
gi|1706533|sp|P55266.1|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA
gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
Length = 1175
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 563 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMA 622
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 623 AEEAMKALQEEAANSADDQSGGANTDSLDESVAPNKIRRIGELVRYLNTNPVGGLLEYAR 682
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 683 SHGF-AAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738
>gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911]
gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911]
Length = 259
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 70 RLNTGDRTPV----SLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
++N+G + V S +QEL+ R G A +Y+++Q +G + F R+SL+ +
Sbjct: 164 KINSGAFSHVMDFKSQLQELVQRDGAGAIEYKILQEKGPAHSREFVSRVSLSGNE---LG 220
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
G+G+SKKEA+ +AA+ L+ L
Sbjct: 221 TGTGRSKKEAEQHAAQMALEIL 242
>gi|407769068|ref|ZP_11116445.1| dsRNA-specific ribonuclease [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407287988|gb|EKF13467.1| dsRNA-specific ribonuclease [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 227
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QELL RG PKYE++ +G + P+F +S T + A GKSK+EA+ AA+
Sbjct: 162 LQELLQGRGKPLPKYEMVGRQGPAHAPVFTIELS-TGDGESVKA--EGKSKREAEQLAAQ 218
Query: 141 SVLDQL 146
+LD L
Sbjct: 219 LMLDTL 224
>gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 634
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA- 134
++PV+ + E + + G + ++ L+ EG ++P F+Y +++ +++ V+ S K K+
Sbjct: 48 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMA 107
Query: 135 --------KHNAAKSVLDQLIGRD----DEKLMCQK-----ENLFKVEPNPVGQLQEACM 177
+ AA S DQ G + DE + K E + + NPVG L E
Sbjct: 108 AEEAMKALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYAR 167
Query: 178 TRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233
+ + ++ + +G PHE F A V + SKK K++AA L+ L
Sbjct: 168 SHGFAAE-FKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223
>gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
Length = 233
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 80 SLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAA 139
+L+QE L G P Y +I +G + P+F +S+ E VA G G S K+++ AA
Sbjct: 154 TLLQETLQAEGLRPTYRVISKQGPPHRPVFISGVSVDGEE---VATGRGSSIKQSEQAAA 210
Query: 140 KSVLDQL 146
++ L+ L
Sbjct: 211 RAALEIL 217
>gi|333985409|ref|YP_004514619.1| ribonuclease 3 [Methylomonas methanica MC09]
gi|333809450|gb|AEG02120.1| Ribonuclease 3 [Methylomonas methanica MC09]
Length = 226
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKKIAKRE 224
+P +LQE RK PVYE +G H + F V V + E +G+G S+K A++
Sbjct: 154 DPKTRLQELMQARKKELPVYELISMSGADHAQTFEVKCSVPITTETTQGVGISRKKAEQA 213
Query: 225 AALNMLKFLE 234
AA +ML LE
Sbjct: 214 AAESMLILLE 223
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRIS--LTSES 119
A + ++L+T ++ P + +QEL+ +R+ P YELI + GA + F+ + S +T+E+
Sbjct: 140 AEKFAEIKLDTWNKDPKTRLQELMQARKKELPVYELISMSGADHAQTFEVKCSVPITTET 199
Query: 120 RLYVAIGSGKSKKEAKHNAAKSVL 143
G G S+K+A+ AA+S+L
Sbjct: 200 ----TQGVGISRKKAEQAAAESML 219
>gi|90078150|dbj|BAE88755.1| unnamed protein product [Macaca fascicularis]
Length = 272
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 193 GLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVPIEIPEK 243
GLP R F + V + EG G +KK+AKR AA NML+ L VP P K
Sbjct: 7 GLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILGFKVPQAQPTK 58
>gi|225453660|ref|XP_002268369.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Vitis vinifera]
Length = 1971
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV----YKEEGMGK---SKKIAKRE 224
L + C+ R WP PVY G H + FT VN + +E +G+ S K AK
Sbjct: 1898 LNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKAKDS 1957
Query: 225 AALNMLKFL 233
AA+ +L+ L
Sbjct: 1958 AAVLLLELL 1966
>gi|163851697|ref|YP_001639740.1| ribonuclease III [Methylobacterium extorquens PA1]
gi|163663302|gb|ABY30669.1| Ribonuclease III [Methylobacterium extorquens PA1]
Length = 256
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE M R PVYE E +G H +F + A V + G G SK++A++EAA +L
Sbjct: 181 LQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVL 240
>gi|149751348|ref|XP_001497601.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Equus
caballus]
Length = 1145
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ PV+ + E + + G++ ++ L+ EG ++P F+Y +++ + + S SKK AK
Sbjct: 558 KNPVTTLLECVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHT---FPTASAPSKKVAK 614
Query: 136 HNAAKSVLDQL-------IGRDDEKLMCQKENLFKVEP------------------NPVG 170
AA+ + L D++ E+L +E NPVG
Sbjct: 615 QMAAEEAMKALHEEAANSTPSDNQPGSTNTESLDNLESVIPNKVRRIGELVRYLNTNPVG 674
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 675 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 733
Query: 230 LKFL 233
L+ L
Sbjct: 734 LRVL 737
>gi|240142575|ref|YP_002967088.1| hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
AM1]
gi|240012522|gb|ACS43747.1| Hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
AM1]
Length = 690
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV 208
E NP +LQE C K P P YE E G PH+R+F A V V
Sbjct: 511 ELNPRNRLQEYCAGAKHPAPTYEVSE-RGPPHDRVFEAVATVRV 553
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-----NVYKEEGMGKSKKIAKREA 225
+L+ AC RKWP P +E + G H FT A + ++ G+SKK A+R A
Sbjct: 613 RLETACRKRKWPMPRFEV-KGDGPSHAPTFTAVARLRAGGRDLVTPACAGRSKKEAERVA 671
Query: 226 ALNMLKFLE 234
A ML +E
Sbjct: 672 ARAMLDLVE 680
>gi|358445257|ref|ZP_09155867.1| ribonuclease III [Corynebacterium casei UCMA 3821]
gi|356608703|emb|CCE54110.1| ribonuclease III [Corynebacterium casei UCMA 3821]
Length = 244
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAA 226
LQE C RK P P Y T +TG H+++F+ +V EGMG +KK A++ AA
Sbjct: 180 LQELCAERKMPMPEY-TATSTGPEHDQLFSAQVFVEGQLLGEGMGPNKKQAEQHAA 234
>gi|254561469|ref|YP_003068564.1| ribonuclease III [Methylobacterium extorquens DM4]
gi|254268747|emb|CAX24708.1| ribonuclease III [Methylobacterium extorquens DM4]
Length = 256
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE M R PVYE E +G H +F + A V + G G SK++A++EAA +L
Sbjct: 181 LQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVL 240
>gi|398831537|ref|ZP_10589715.1| ribonuclease III [Phyllobacterium sp. YR531]
gi|398212244|gb|EJM98853.1| ribonuclease III [Phyllobacterium sp. YR531]
Length = 238
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREA 225
+P +LQE + P+Y E TG H+ FT+ V ++ G G+SK++A++EA
Sbjct: 158 DPKTELQEWAHQQDGAQPLYSVVERTGPDHDPQFTIRVNVKGFEPATGKGRSKRLAEQEA 217
Query: 226 ALNML 230
A+ +L
Sbjct: 218 AIALL 222
>gi|402309780|ref|ZP_10828755.1| ribonuclease III [Eubacterium sp. AS15]
gi|400370906|gb|EJP23887.1| ribonuclease III [Eubacterium sp. AS15]
Length = 233
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D L +E+ RG KYELI ++G +E IF I + +++L + G G SKKEA
Sbjct: 162 DDYKSKLQEEVQKVRGRTLKYELIAMKGPDHERIF--TIGVYCDNKL-IGTGKGHSKKEA 218
Query: 135 KHNAAKSVLDQ 145
+ AAK L++
Sbjct: 219 EQLAAKDALEK 229
>gi|406881398|gb|EKD29472.1| hypothetical protein ACD_78C00391G0002 [uncultured bacterium (gcode
4)]
Length = 248
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKI 220
++ +P LQE R P YE +G H + +TV A + + + G G SKK
Sbjct: 167 LQLHVDPKSHLQEISQARYSTTPTYEVIRESGSDHSKSYTVSAAIGLVQVGTGTGTSKKK 226
Query: 221 AKREAALNML 230
A++EAA N L
Sbjct: 227 AQQEAAENAL 236
>gi|240138862|ref|YP_002963337.1| ribonuclease III [Methylobacterium extorquens AM1]
gi|418058990|ref|ZP_12696951.1| ribonuclease III [Methylobacterium extorquens DSM 13060]
gi|240008834|gb|ACS40060.1| ribonuclease III [Methylobacterium extorquens AM1]
gi|373567497|gb|EHP93465.1| ribonuclease III [Methylobacterium extorquens DSM 13060]
Length = 256
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE M R PVYE E +G H +F + A V + G G SK++A++EAA +L
Sbjct: 181 LQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVL 240
>gi|218530503|ref|YP_002421319.1| ribonuclease III [Methylobacterium extorquens CM4]
gi|218522806|gb|ACK83391.1| Ribonuclease III [Methylobacterium extorquens CM4]
Length = 256
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE M R PVYE E +G H +F + A V + G G SK++A++EAA +L
Sbjct: 181 LQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVL 240
>gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 279
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 165 EP-NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAK 222
EP NP LQE + P Y+ ET G PH+R F Y + G+G++KK A+
Sbjct: 161 EPENPKSALQEK-LQEDGITPTYKLIETQGPPHDRTFVAAVYAGLQALARGVGRTKKEAE 219
Query: 223 REAALNMLKFLETVPIEIP--EKKQGEDVDEKGESNGLKHTHDS 264
+AA L L P E K +G+D E + H+ D+
Sbjct: 220 SKAAQTALSHL---PDEKHKRHKDKGKDKAEHRKKGATSHSQDN 260
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P S +QE L G P Y+LI+ +G ++ F ++ +A G G++KKEA+
Sbjct: 165 PKSALQEKLQEDGITPTYKLIETQGPPHDRTF---VAAVYAGLQALARGVGRTKKEAESK 221
Query: 138 AAKSVLDQL 146
AA++ L L
Sbjct: 222 AAQTALSHL 230
>gi|171057289|ref|YP_001789638.1| ribonuclease III [Leptothrix cholodnii SP-6]
gi|170774734|gb|ACB32873.1| Ribonuclease III [Leptothrix cholodnii SP-6]
Length = 228
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKREAALN 228
QLQE R+ P Y E T G H++ F V V + G G+S++ A++EAA
Sbjct: 159 QLQEWLQARRQSVPEYRIETTRGRAHDQTFVVVCSVAGPGIEARGEGRSRRAAEQEAARL 218
Query: 229 MLKFLETVP 237
+L+ L + P
Sbjct: 219 VLEQLSSTP 227
>gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1]
gi|122499604|sp|Q28V23.1|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1]
Length = 227
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 76 RTPVSLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
R + +QE RG AP Y + G + P+F+ R++L+S A K+K++A
Sbjct: 156 RDAKTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGEN---AEAQAKAKRQA 212
Query: 135 KHNAAKSVLDQLIG 148
+ AAK +L QL G
Sbjct: 213 EQQAAKDLLAQLAG 226
>gi|393766231|ref|ZP_10354787.1| ribonuclease III [Methylobacterium sp. GXF4]
gi|392728012|gb|EIZ85321.1| ribonuclease III [Methylobacterium sp. GXF4]
Length = 259
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE M R P PVY E TG H F + V + G G SK++A++EAA ++
Sbjct: 183 LQEWAMGRSLPIPVYAVVERTGPDHAPRFRIAVQVEGLEPGHGEGTSKRVAEQEAARALM 242
Query: 231 --KFLETVP 237
+ + TVP
Sbjct: 243 EREGIGTVP 251
>gi|341876649|gb|EGT32584.1| hypothetical protein CAEBREN_18147 [Caenorhabditis brenneri]
Length = 804
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV--YKEEGMGKSKKIAKRE 224
NPV + E C R+W PP + T E +G H ++F +N Y+ K KK K
Sbjct: 724 NPVSLIMELCAKRRWDPPAF-TCEDSGADHMKLFIWTVVINGVEYRPMCGSKQKKEGKAV 782
Query: 225 AALNMLKFLETVP 237
AA L+ L +P
Sbjct: 783 AAQVALQSLGILP 795
>gi|88797948|ref|ZP_01113535.1| ribonuclease III [Reinekea blandensis MED297]
gi|88779145|gb|EAR10333.1| ribonuclease III [Reinekea sp. MED297]
Length = 219
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAKREAALN 228
+LQE R+ P P Y+ + TG H++ FTV V + G+G S+++A++EAA
Sbjct: 151 RLQEFLQARRLPLPEYQVKTITGEAHQQEFTVHCQVESLETPMVGVGSSRRMAEQEAANA 210
Query: 229 MLKFL 233
LK L
Sbjct: 211 ALKAL 215
>gi|444721324|gb|ELW62066.1| Protein SON [Tupaia chinensis]
Length = 798
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 25/137 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 672 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 709
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 710 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 768
Query: 224 EAALNMLKFLETVPIEI 240
AA +L+ + VP ++
Sbjct: 769 TAATVVLQAMGLVPKDL 785
>gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
Length = 243
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 65 RLEVMRLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RL+ + + D+ ++ QEL+ ++ T+P Y+ + N +FK + + ++
Sbjct: 150 RLKNLDIENFDKDYKTIFQELIQKKHKTSPIYKSYEYYDN-NHEMFKSEVYVNDKN---F 205
Query: 124 AIGSGKSKKEAKHNAAKSVLDQL 146
A+G GKSKKEA+ NAAK LD++
Sbjct: 206 ALGVGKSKKEAETNAAKKALDKI 228
>gi|222475478|ref|YP_002563895.1| ribonuclease III [Anaplasma marginale str. Florida]
gi|254995287|ref|ZP_05277477.1| ribonuclease III [Anaplasma marginale str. Mississippi]
gi|255003466|ref|ZP_05278430.1| ribonuclease III [Anaplasma marginale str. Puerto Rico]
gi|254807234|sp|B9KGT5.1|RNC_ANAMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|222419616|gb|ACM49639.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida]
Length = 232
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE-GMGKSKKIAKREA 225
+P LQE R W P+Y+ +G H+ +F V + + G G SKK+A++EA
Sbjct: 161 DPKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEA 220
Query: 226 ALNMLKFLETVP 237
A MLK + +P
Sbjct: 221 AKLMLKKITELP 232
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 78 PVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P + +QE + RG A P Y+L+ G ++P+F +S+ + +G+G SKK A+
Sbjct: 162 PKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVEVSIQEHGNV---LGTGSSKKLAEQ 218
Query: 137 NAAKSVLDQL 146
AAK +L ++
Sbjct: 219 EAAKLMLKKI 228
>gi|160900693|ref|YP_001566275.1| ribonuclease III [Delftia acidovorans SPH-1]
gi|333913009|ref|YP_004486741.1| ribonuclease 3 [Delftia sp. Cs1-4]
gi|238687167|sp|A9BNJ5.1|RNC_DELAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|160366277|gb|ABX37890.1| Ribonuclease III [Delftia acidovorans SPH-1]
gi|333743209|gb|AEF88386.1| Ribonuclease 3 [Delftia sp. Cs1-4]
Length = 227
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMGKSKKIAKREAALNM 229
LQE R+ P YE TTG H + F V CA + + G G S++ A++ AA M
Sbjct: 159 LQEWLQGRRMKLPQYEVVATTGAAHRQTFEVACAIAELQLQARGTGASRRAAEQTAATAM 218
Query: 230 LKFLET 235
L+ L+
Sbjct: 219 LELLKA 224
>gi|381181552|ref|ZP_09890386.1| RNAse III [Treponema saccharophilum DSM 2985]
gi|380766772|gb|EIC00777.1| RNAse III [Treponema saccharophilum DSM 2985]
Length = 249
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 72 NTGDRTPVSLMQELLSRR-GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS 130
N G + SL+QE ++ P YEL++ G ++ +F + L S GKS
Sbjct: 173 NKGHKDYKSLLQEWYQKKYKECPVYELVKKSGPEHDKVFWVTVHLKGAS---YGPAQGKS 229
Query: 131 KKEAKHNAAKSVLDQL 146
KKEA+ NAAK+ ++L
Sbjct: 230 KKEAEQNAAKAAYEEL 245
>gi|12853295|dbj|BAB29708.1| unnamed protein product [Mus musculus]
Length = 206
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+ +L + RK P Y G+P R F + V G G +KKIAK+ AA
Sbjct: 2 NPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAA 61
Query: 227 LNM---LKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-Q 277
M L + + ++ P K GE+ G G ++T L+P + ++++
Sbjct: 62 EAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEAS 121
Query: 278 YHTVFSQKT 286
H V S T
Sbjct: 122 RHRVTSGTT 130
>gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338]
gi|336064708|ref|YP_004559567.1| ribonuclease III [Streptococcus pasteurianus ATCC 43144]
gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338]
gi|334282908|dbj|BAK30481.1| ribonuclease III [Streptococcus pasteurianus ATCC 43144]
Length = 228
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 186 YETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIAKREAALNMLKFLE 234
Y +G H ++F V YVN K +G+GKSKK+A+++AA N L L+
Sbjct: 179 YRVSNESGPAHAKVFEVTVYVNDKAKSQGIGKSKKLAEQDAAKNALVLLQ 228
>gi|56417113|ref|YP_154187.1| ribonuclease III [Anaplasma marginale str. St. Maries]
gi|81358903|sp|Q5P9U8.1|RNC_ANAMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56388345|gb|AAV86932.1| ribonuclease III [Anaplasma marginale str. St. Maries]
Length = 232
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE-GMGKSKKIAKREA 225
+P LQE R W P+Y+ +G H+ +F V + + G G SKK+A++EA
Sbjct: 161 DPKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEA 220
Query: 226 ALNMLKFLETVP 237
A MLK + +P
Sbjct: 221 AKLMLKKITELP 232
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 78 PVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P + +QE + RG A P Y+L+ G ++P+F +S+ + +G+G SKK A+
Sbjct: 162 PKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVEVSIQEHGNV---LGTGSSKKLAEQ 218
Query: 137 NAAKSVLDQL 146
AAK +L ++
Sbjct: 219 EAAKLMLKKI 228
>gi|126726095|ref|ZP_01741937.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
gi|126705299|gb|EBA04390.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
Length = 228
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN 207
+P LQE RK PPPVY+ G H MFT+ A ++
Sbjct: 157 DPKSSLQEWAQARKMPPPVYKLLRREGADHAPMFTIAAILD 197
>gi|431931182|ref|YP_007244228.1| ribonuclease III [Thioflavicoccus mobilis 8321]
gi|431829485|gb|AGA90598.1| ribonuclease III [Thioflavicoccus mobilis 8321]
Length = 225
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 75 DRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
D+ P + +QE L ++R P+YE++ ++G+ + +F R L + R G G S++
Sbjct: 151 DKDPKTRLQERLQAKRRPLPEYEVLGVDGSQHAQVFHVRCRLPDDDR--EVHGDGTSRRR 208
Query: 134 AKHNAAKSVLDQL 146
A+ AA+S+L++L
Sbjct: 209 AEQAAAESMLERL 221
>gi|336233266|ref|YP_004590012.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
gi|335345207|gb|AEH39753.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
Length = 226
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKK 219
F ++ +P +LQE + +P P+Y + G H+++F + +N + G+G S++
Sbjct: 150 FNIQKDPKTRLQEYLQAKHFPLPLYNIGKIYGEAHKQIFKINCKINGIHDILIGIGSSRR 209
Query: 220 IAKREAALNML 230
A++ AA N L
Sbjct: 210 KAEQNAAQNAL 220
>gi|444920292|ref|ZP_21240135.1| Ribonuclease 3 [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508611|gb|ELV08780.1| Ribonuclease 3 [Wohlfahrtiimonas chitiniclastica SH04]
Length = 224
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 76 RTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+ P S +QE L + P+YE++ IEG + FK + ++ + I G SKK A
Sbjct: 156 KDPKSRLQEHLQAINKSIPEYEIVAIEGQDHAQSFK----VACHAQSFTTIAEGTSKKRA 211
Query: 135 KHNAAKSVLDQLI 147
+ NAA+ +LD+L+
Sbjct: 212 EQNAAQLMLDKLL 224
>gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
Length = 272
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREA 225
+P LQE R P PVY E TG H+ F V + + EG+G SK+ A++ A
Sbjct: 196 DPKTVLQEWAQARGLPTPVYREVERTGPHHDPQFRVAVVLPGLEPAEGVGGSKRAAEKVA 255
Query: 226 ALNML 230
A ML
Sbjct: 256 ASAML 260
>gi|295698532|ref|YP_003603187.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
gi|291157177|gb|ADD79622.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
Length = 227
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 160 NLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE------G 213
NL + E +P +LQE P P YE ++ G HE+ FT+ V +++ G
Sbjct: 143 NLSRDEKDPKTKLQEHLQKFHLPLPKYELLKSVGYDHEKQFTIVCKVFGFRKSDHFITIG 202
Query: 214 MGKSKKIAKREAALNML 230
GK K A++ AA +M
Sbjct: 203 TGKKYKEAEKLAAKHMF 219
>gi|407777101|ref|ZP_11124372.1| ribonuclease III [Nitratireductor pacificus pht-3B]
gi|407301266|gb|EKF20387.1| ribonuclease III [Nitratireductor pacificus pht-3B]
Length = 239
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREA 225
+P LQE PVY E+ G H+ +F++ V YK G G+SK+ A++ A
Sbjct: 162 DPKTTLQEWAHQVSGATPVYAVEDRQGPDHDPIFSIAVRVKGYKPAHGRGRSKREAEQAA 221
Query: 226 ALNMLK 231
A +ML+
Sbjct: 222 ATSMLE 227
>gi|386389600|ref|ZP_10074414.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
gi|385695370|gb|EIG25932.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
Length = 222
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 76 RTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+ P + +QE L R+ P+YE++ I+G + FK + + +++ IG+ S+++A
Sbjct: 151 KDPKTRLQEFLQGRKLPLPEYEVMDIKGEAHNQTFKVTCKVKNVDEVFIGIGT--SRRKA 208
Query: 135 KHNAAKSVLDQLI 147
+ NAA+ VL+ LI
Sbjct: 209 EQNAAEKVLNVLI 221
>gi|355667100|gb|AER93758.1| adenosine deaminase, RNA-specific [Mustela putorius furo]
Length = 456
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ PV+ + E + + GT+ ++ L+ EG ++P F+Y +++ + + V S SKK AK
Sbjct: 264 KNPVTTLLECVHKLGTSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTV---SAPSKKVAK 320
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL P NPVG
Sbjct: 321 QMAAEEAMKALHGEATSSIPLDTQPGDTSTEPFDNLQSGLPSKVRRIGELVRYLNTNPVG 380
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 381 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 439
Query: 230 LKFL 233
L+ L
Sbjct: 440 LRVL 443
>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
Length = 256
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE C K P PVY + +TG H++ F A V + G+G +KK+A+++AA
Sbjct: 180 LQELCAELKAPMPVY-SATSTGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEAC 238
Query: 231 KFLETVPI 238
+ L P+
Sbjct: 239 QTLRETPL 246
>gi|195162123|ref|XP_002021905.1| GL14352 [Drosophila persimilis]
gi|194103803|gb|EDW25846.1| GL14352 [Drosophila persimilis]
Length = 619
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK-FLETVPIEIPEK 243
+Y+ E TG H +FT+ V+ K G G+SKK+A+ EAA L+ F++
Sbjct: 71 IYKLESQTGPVHAPLFTISVEVDGQKYMGQGRSKKVARIEAAATALRSFIQF-------- 122
Query: 244 KQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKT---KGPLLEKLLSTRNL 300
K G + S L T D I TV QK KGP++ LL L
Sbjct: 123 KDGAVLSPLKPSGNLDFTSDEHLENDVSKSAI----TVDGQKKVPDKGPVM--LL--YEL 174
Query: 301 IDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTV 349
++V + ++ + +++++ E+K SL ++ +P+ V
Sbjct: 175 YNDVNFECINIDSAQNNCRFKMTVTINEKKFDGTALASLCNISYSPMVV 223
>gi|47223534|emb|CAF98021.1| unnamed protein product [Tetraodon nigroviridis]
Length = 687
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 186 YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+E + +G PH + F V + EG G SKK++K+ AA+++L+ L+ +PI
Sbjct: 287 FEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAAISILQDLKKLPI 339
>gi|148233972|ref|NP_001081675.1| adenosine deaminase, RNA-specific [Xenopus laevis]
gi|1932813|gb|AAB51687.1| dsRNA adenosine deaminase [Xenopus laevis]
Length = 1270
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++ P+SL+ E + G +++L+ EG ++P F Y + + +++ V +KK A
Sbjct: 677 NKNPISLLMEHGQKSGNMCEFQLVSQEGPPHDPKFTYTVKIGNQTFPPVV---ANNKKMA 733
Query: 135 KHNAAKSVLDQLIG 148
KH AA++ + +L+G
Sbjct: 734 KHLAAEAAVRELLG 747
>gi|402829248|ref|ZP_10878124.1| ribonuclease III [Slackia sp. CM382]
gi|402284229|gb|EJU32732.1| ribonuclease III [Slackia sp. CM382]
Length = 312
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P S +QE L G P Y+L++ +G ++ F +S +A G G++KKE++
Sbjct: 165 PKSALQEKLQEEGITPTYKLVETQGPPHDRTF---VSQVFAGLTALAQGIGRTKKESESQ 221
Query: 138 AAKSVLDQL 146
AAK+ LD +
Sbjct: 222 AAKAALDMI 230
>gi|346724221|ref|YP_004850890.1| ribonuclease III [Xanthomonas axonopodis pv. citrumelo F1]
gi|346648968|gb|AEO41592.1| ribonuclease III [Xanthomonas axonopodis pv. citrumelo F1]
Length = 226
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + V + EG G S+++
Sbjct: 150 KAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFHVACILEQPVARAEGQGTSRRL 209
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 210 AEQQAATLIIAQLDS 224
>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
Length = 256
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE C K P PVY + +TG H++ F A V + G+G +KK+A+++AA
Sbjct: 180 LQELCAELKAPMPVY-SATSTGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEAC 238
Query: 231 KFLETVPI 238
+ L P+
Sbjct: 239 QTLRETPL 246
>gi|337292610|emb|CCB90626.1| Ribonuclease 3 [Waddlia chondrophila 2032/99]
Length = 243
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREA 225
N QLQ+ C + PP+Y+ +G H+++FT+ +N + G G SKK A++ A
Sbjct: 165 NWKAQLQDYCQKKYRHPPLYKVVSESGPDHQKIFTISVLINNQEVGHGEGPSKKEAQQAA 224
Query: 226 A 226
A
Sbjct: 225 A 225
>gi|451818132|ref|YP_007454333.1| ribonuclease 3 [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451784111|gb|AGF55079.1| ribonuclease 3 [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 232
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QELL + G A YEL++ EG + K+ ++ + +L + GSG SKKE++ NAAK
Sbjct: 165 LQELLQKDGEVAIHYELVKYEGPPHRR--KFYTNVKIDDKL-MGEGSGYSKKESEQNAAK 221
Query: 141 SVLDQLIG 148
LD L G
Sbjct: 222 QALDMLEG 229
>gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
lyrata]
gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
lyrata]
Length = 391
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKW 181
++A G ++K A+ AAK L +L +++ ++++ + +L E C+ +KW
Sbjct: 268 FLASGRAENKDIARLIAAKEALRKLSEVFPVEMVIDEDSVEIELKHAKTKLNEICLKKKW 327
Query: 182 PPPVYETEETTGLPHERMFTVCAYVNVYKEE-----GMGKSK-KIAKREAALNMLKFL 233
P P+Y EE H + F A + + EE G +SK K A+ +A +M++ L
Sbjct: 328 PKPIYSIEEDRTSVHGKRFVCSAKIKIPTEETLYMKGDEQSKIKKAESSSAYHMIRAL 385
>gi|239624036|ref|ZP_04667067.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522067|gb|EEQ61933.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 235
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 21/177 (11%)
Query: 85 LLSRRGTAPKYELIQIEGAI-NEPIFKYRISLTSESRL--YVAIGSGK--SKKEAKHNAA 139
L + T P+ +L +I +I EP Y + RL Y+ +G G+ + +++
Sbjct: 62 LYHKYATLPEGDLTKIRASIVCEPTLAY---CAGDIRLGEYLFLGKGEDATGGRGRNSVV 118
Query: 140 KSVLDQLIGRD--DEKLMCQKENLFKVEPNPVGQ----------LQEACMTRKWPPPVYE 187
++ LIG D KE + + N + LQE +R+ YE
Sbjct: 119 SDAMEALIGAIYLDGGFANAKEFIHRFILNDIEHKQLFYDSKTILQEMVQSRQAEALSYE 178
Query: 188 TEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEK 243
G H + F VCA + + GMG++KK A++ AA N + L IE K
Sbjct: 179 ILREEGPDHNKSFEVCAKIGDAEIGRGMGRTKKAAEQVAAYNGILKLRAEDIETDAK 235
>gi|194744759|ref|XP_001954860.1| GF18480 [Drosophila ananassae]
gi|190627897|gb|EDV43421.1| GF18480 [Drosophila ananassae]
Length = 871
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKRE 224
+PV L E KW PP Y E TG PH R F +N Y + +KK AK
Sbjct: 797 HPVCVLNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGCNNKKEAKLN 856
Query: 225 AALNMLKFLETVP 237
AA L L +P
Sbjct: 857 AAKLCLCALGILP 869
>gi|390565713|ref|ZP_10246331.1| Ribonuclease 3 [Nitrolancetus hollandicus Lb]
gi|390171040|emb|CCF85668.1| Ribonuclease 3 [Nitrolancetus hollandicus Lb]
Length = 258
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 138 AAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHE 197
A+ L L+ +D E+++ + E N G+LQE R+ P+Y T +G H
Sbjct: 154 GARRFLRALLNKDAEEIISTGQ-----ETNYKGRLQELIQERERVTPIYRTTGVSGPAHN 208
Query: 198 RMFTVCAYVN 207
R FT+ A VN
Sbjct: 209 RTFTMEAIVN 218
>gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
Length = 252
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREA 225
N QLQ+ C + PP+Y+ +G H+++FT+ +N + G G SKK A++ A
Sbjct: 174 NWKAQLQDYCQKKYRHPPLYKVVSESGPDHQKIFTISVLINNQEVGHGEGPSKKEAQQAA 233
Query: 226 A 226
A
Sbjct: 234 A 234
>gi|162447098|ref|YP_001620230.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
gi|161985205|gb|ABX80854.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
Length = 219
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 82 MQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKS 141
+QE + + Y+ +++ G + PIFK + L E+ + + G G S KEA+ NAAK
Sbjct: 151 LQEFIQLERKSLSYKTVKVGGPSHRPIFKSEVFL--ENSIMLGTGQGSSTKEAEQNAAKE 208
Query: 142 VLDQLI 147
L +++
Sbjct: 209 ALSKVV 214
>gi|114320503|ref|YP_742186.1| ribonuclease III [Alkalilimnicola ehrlichii MLHE-1]
gi|122311783|sp|Q0A8Z1.1|RNC_ALHEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|114226897|gb|ABI56696.1| RNAse III [Alkalilimnicola ehrlichii MLHE-1]
Length = 228
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKRE 224
+P +LQE + P P YE E +G H++ F V + EG S++ A+++
Sbjct: 154 DPKTRLQEHLQAGRRPLPRYEVLEVSGQSHDQTFRVACRLQDAAVTAEGEAGSRRKAEQQ 213
Query: 225 AALNMLKFLE 234
AA MLK LE
Sbjct: 214 AAEQMLKRLE 223
>gi|116492609|ref|YP_804344.1| ribonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|421894389|ref|ZP_16324878.1| ribonuclease III [Pediococcus pentosaceus IE-3]
gi|122265927|sp|Q03FX0.1|RNC_PEDPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116102759|gb|ABJ67902.1| RNAse III [Pediococcus pentosaceus ATCC 25745]
gi|385272693|emb|CCG90250.1| ribonuclease III [Pediococcus pentosaceus IE-3]
Length = 232
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QELL + G YEL+ EG N+ IF +S+T++ + +A G+G SKK A+ NA
Sbjct: 164 SELQELLQKNGDVEIDYELVSEEGPENDLIFT--VSVTADHK-KLATGTGHSKKVAEQNA 220
Query: 139 AKSVLDQLIGR 149
A L QL+ R
Sbjct: 221 ANQAL-QLLRR 230
>gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122]
gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122]
Length = 312
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P S +QE L G P Y+L++ +G ++ F +S +A G G++KKE++
Sbjct: 165 PKSALQEKLQEEGITPTYKLVETQGPPHDRTF---VSQVFAGLTALAQGIGRTKKESESQ 221
Query: 138 AAKSVLDQL 146
AAK+ LD +
Sbjct: 222 AAKAALDMI 230
>gi|354594333|ref|ZP_09012372.1| ribonuclease 3 [Commensalibacter intestini A911]
gi|353672009|gb|EHD13709.1| ribonuclease 3 [Commensalibacter intestini A911]
Length = 245
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE + R P PVYE G H +F + Y+ G G++K+ A+ AA ++L
Sbjct: 177 LQEWVLARGLPLPVYELVSQEGPSHTPIFVIKVVAKNYEGRGEGRNKRAAESAAAKDLLI 236
Query: 232 FLETV 236
L+++
Sbjct: 237 KLDSI 241
>gi|410621832|ref|ZP_11332675.1| ribonuclease III [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410158589|dbj|GAC28049.1| ribonuclease III [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 224
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 82 MQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L SR+ P YE+I I G + F+ + T E IG GKS+++A+ NAAK
Sbjct: 158 LQEFLQSRQLPLPNYEVISISGKDHAQTFE--VDCTVEPLNTSQIGKGKSRRQAEQNAAK 215
Query: 141 SVLDQLI 147
L++L+
Sbjct: 216 QTLEKLL 222
>gi|126307762|ref|XP_001373191.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Monodelphis domestica]
Length = 1131
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ P+S++ E + + G+ ++ LI EG ++P FKY + + S++ SKK AK
Sbjct: 546 KNPISVLMEHVQKNGSTCEFLLISQEGPAHDPKFKYCVKMGSQT---FPTMMANSKKAAK 602
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENLFK---VEP-------------------NPVGQLQ 173
AA+ + L G D L + ++ V P NP+ L
Sbjct: 603 QMAAEVAVKALCG--DSSLTPWTKQVYTSKLVSPSATPGKAKKIGDLIKYLNANPISGLF 660
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKF 232
E + + ++ + +G PHE F A V + SKK K+EAA L+
Sbjct: 661 EYARSNGFAAE-FKLVDQSGPPHEPKFIYQAKVGGRWFPAVSAHSKKQGKQEAADAALRV 719
Query: 233 L 233
L
Sbjct: 720 L 720
>gi|36546|emb|CAA45282.1| son-a [Homo sapiens]
Length = 1523
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 1326 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 1363
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 1364 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 1422
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 1423 TAATVVLQAMGLVP 1436
>gi|91789485|ref|YP_550437.1| ribonuclease III [Polaromonas sp. JS666]
gi|91698710|gb|ABE45539.1| RNAse III [Polaromonas sp. JS666]
Length = 233
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY--KEEGMGKSKKIA 221
+ +P +LQE RK P+Y T G H++ F V + Y E G+G S++
Sbjct: 157 IGKDPKTELQEWLQGRKMNLPIYRVVGTMGAAHKQTFDVECEITEYGRAERGIGGSRRAG 216
Query: 222 KREAALNMLKFLETV 236
++ AA ML +L+T+
Sbjct: 217 EQAAAAAMLIYLKTL 231
>gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola BCc]
gi|122285505|sp|Q057R4.1|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola BCc]
Length = 226
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 139 AKSVLDQLIGRDDEKLMCQKENLFKVEPNPVG-------QLQEACMTRKWPPPVYETEET 191
A LD I + ++ +N FK + NP G +LQE ++ + P+Y +
Sbjct: 121 ASIFLDSNIYTVERIILYWYKNRFK-KMNPTGTKKDPKTRLQEYLQSKHFSLPIYSIGQI 179
Query: 192 TGLPHERMFTVCAYVNVYKEE--GMGKSKKIAKREAALNMLKFLE 234
G H ++FT+ ++ E G+G S++ A+++AA N L LE
Sbjct: 180 YGEAHNQIFTIYCKIDGLSELLIGIGASRRKAEQDAAQNALIRLE 224
>gi|325926994|ref|ZP_08188269.1| RNAse III [Xanthomonas perforans 91-118]
gi|325928522|ref|ZP_08189710.1| RNAse III [Xanthomonas perforans 91-118]
gi|325541061|gb|EGD12615.1| RNAse III [Xanthomonas perforans 91-118]
gi|325542653|gb|EGD14120.1| RNAse III [Xanthomonas perforans 91-118]
Length = 226
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + V + EG G S+++
Sbjct: 150 KAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFHVACILEQPVARAEGQGTSRRL 209
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 210 AEQQAATLVIAQLDS 224
>gi|415886541|ref|ZP_11548321.1| ribonuclease III [Bacillus methanolicus MGA3]
gi|387587228|gb|EIJ79551.1| ribonuclease III [Bacillus methanolicus MGA3]
Length = 252
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 70 RLNTGDRTPV----SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVA 124
++N G + V S +QEL+ R G +Y ++Q +G + F +SL + +++ +
Sbjct: 163 KINAGAFSHVMDYKSQLQELVQRDGAGTIEYRILQEKGPAHNREF---VSLVTLNKVELG 219
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
G+G+SKKEA+ +AA+ L++L
Sbjct: 220 TGTGRSKKEAEQHAAQMALEKL 241
>gi|1932815|gb|AAB51688.1| dsRNA adenosine deaminase, partial [Xenopus laevis]
Length = 1124
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++ P+S++ E + G+ +++L+Q EG ++P F Y + + +++ V SKK A
Sbjct: 531 NKNPISVLMEHGQKSGSMCEFQLVQQEGPPHDPKFTYTVKIGNQTFPPVV---ANSKKMA 587
Query: 135 KHNAAKSVLDQLIG 148
K AA++ + +L+G
Sbjct: 588 KQLAAEAAVRELLG 601
>gi|21242078|ref|NP_641660.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306]
gi|381172524|ref|ZP_09881650.1| ribonuclease III [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|390992171|ref|ZP_10262414.1| ribonuclease III [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|418515623|ref|ZP_13081802.1| ribonuclease III [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|418521626|ref|ZP_13087668.1| ribonuclease III [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|24212270|sp|Q8PMV0.1|RNC_XANAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|21107485|gb|AAM36196.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306]
gi|372553111|emb|CCF69389.1| ribonuclease III [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|380687014|emb|CCG38137.1| ribonuclease III [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|410702161|gb|EKQ60670.1| ribonuclease III [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410707532|gb|EKQ65983.1| ribonuclease III [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 226
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + V + EG G S+++
Sbjct: 150 KAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFHVACILEQPVARAEGQGTSRRL 209
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 210 AEQQAATLVIAQLDS 224
>gi|319407031|emb|CBI80668.1| ribonuclease III [Bartonella sp. 1-1C]
Length = 227
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 70 RLNTGDRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
++N G R + +QE + +A P Y+++Q G ++P+F +S+ + IG G
Sbjct: 149 KMNAGRRDSKTELQEWAHTQDSAQPHYQVVQRYGPDHDPVFMVEVSICGYA---PEIGRG 205
Query: 129 KSKKEAKHNAAKSVL 143
SK++A+ +AA+ +L
Sbjct: 206 SSKRQAERDAAERIL 220
>gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|386338195|ref|YP_006034364.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|334280831|dbj|BAK28405.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 228
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 186 YETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIAKREAALNMLKFLE 234
Y +G H ++F V YVN K +G+G+SKK+A+++AA N L L+
Sbjct: 179 YRVSNESGPAHAKVFEVTVYVNDEAKSQGIGRSKKLAEQDAAKNALALLQ 228
>gi|193787107|dbj|BAG52313.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 25/137 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 453 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 490
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 491 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 549
Query: 224 EAALNMLKFLETVPIEI 240
AA +L+ + VP ++
Sbjct: 550 TAATVVLQAMGLVPKDL 566
>gi|429332986|ref|ZP_19213694.1| ribonuclease III [Pseudomonas putida CSV86]
gi|428762332|gb|EKX84538.1| ribonuclease III [Pseudomonas putida CSV86]
Length = 229
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIG-------------RDDEKLMCQKENLFKVEP 166
Y+ +GSG KS + + L+ LIG R L + E+L V+
Sbjct: 92 YLRLGSGELKSGGFRRESILADALEALIGAIYLDADMQTARERVLSWLAGEFESLTLVDT 151
Query: 167 N--PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY--KEEGMGKSKKIAK 222
N P +LQE +R P YE + G PH R F V V + K G G S++IA+
Sbjct: 152 NKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECEVTLLTEKSRGQGVSRRIAE 211
Query: 223 REAALNML 230
+ AA + L
Sbjct: 212 QVAAASAL 219
>gi|78046932|ref|YP_363107.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|90101655|sp|Q3BVV6.1|RNC_XANC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|78035362|emb|CAJ23007.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 226
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + V + EG G S+++
Sbjct: 150 KAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFHVACILEQPVARAEGQGTSRRL 209
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 210 AEQQAATLVIAQLDS 224
>gi|113461383|ref|YP_719452.1| ribonuclease III [Haemophilus somnus 129PT]
gi|112823426|gb|ABI25515.1| RNAse III [Haemophilus somnus 129PT]
Length = 227
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 66 LEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
LE ++ + P + +QE L R P+YE+I+I+G + F R+S E+ V
Sbjct: 145 LEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIKGDAHNQSF--RVSCKVETLTDVV 202
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
G G S+++A+ +AA+ +++L
Sbjct: 203 FGQGTSRRKAEQHAAQQAIEKL 224
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 70 RLNTGDRTPV----SLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
++N G + V S +QEL+ R G +Y ++Q +G + F R+SL E +
Sbjct: 160 KINAGAFSHVMDYKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEE---LG 216
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
G+GKSKKEA+ +AA+ L L
Sbjct: 217 TGTGKSKKEAEQHAAEIALKNL 238
>gi|359463802|ref|ZP_09252365.1| hypothetical protein ACCM5_34124 [Acaryochloris sp. CCMEE 5410]
Length = 168
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NP+G+LQE C ++ P YE E LP E F V + K G G SKK+AK EAA
Sbjct: 104 NPIGELQELCQRQQVSLPNYEFE---ALP-EGFFCTVQAVGL-KGTGEGPSKKMAKMEAA 158
Query: 227 LNMLKFL 233
+L +
Sbjct: 159 RELLGVI 165
>gi|389691083|ref|ZP_10179976.1| ribonuclease III [Microvirga sp. WSM3557]
gi|388589326|gb|EIM29615.1| ribonuclease III [Microvirga sp. WSM3557]
Length = 236
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE-GMGKSKKIAKREA 225
+P LQE + PPP Y E TG H F V V + E G G SK++A++ A
Sbjct: 158 DPKSALQEWAQGQGLPPPTYSVAEQTGPDHAPKFRVLVKVKGAEGEFGSGTSKRVAEQAA 217
Query: 226 ALNML 230
A ++L
Sbjct: 218 ARSLL 222
>gi|170719010|ref|YP_001784170.1| ribonuclease III [Haemophilus somnus 2336]
gi|189043321|sp|B0USS1.1|RNC_HAES2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|168827139|gb|ACA32510.1| Ribonuclease III [Haemophilus somnus 2336]
Length = 223
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 66 LEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
LE ++ + P + +QE L R P+YE+I+I+G + F R+S E+ V
Sbjct: 141 LEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIKGDAHNQSF--RVSCKVETLTDVV 198
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
G G S+++A+ +AA+ +++L
Sbjct: 199 FGQGTSRRKAEQHAAQQAIEKL 220
>gi|344254615|gb|EGW10719.1| Double-stranded RNA-binding protein Staufen-like 2 [Cricetulus
griseus]
Length = 266
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 36/142 (25%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------------DDEK-----------LMCQ 157
G GK+++ A+HNAA L L DD+K +
Sbjct: 29 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIAL 88
Query: 158 KENL---FKVEP------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV 208
K N+ F+ P NP+ +L + RK P Y G+P R F + V
Sbjct: 89 KRNMPVSFEAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKVGN 148
Query: 209 YKEEGMGKSKKIAKREAALNML 230
G G +KKIAK+ AA ML
Sbjct: 149 EVATGTGPNKKIAKKNAAEAML 170
>gi|289547872|ref|YP_003472860.1| ribonuclease III [Thermocrinis albus DSM 14484]
gi|289181489|gb|ADC88733.1| ribonuclease III [Thermocrinis albus DSM 14484]
Length = 237
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
L+V++ + + +L+QEL T P Y LI EG + IF+ + S Y A
Sbjct: 148 LQVVKEGSYRKDYKTLLQELTQHLWKTRPTYRLIGTEGPHHNRIFEVECQVGS----YRA 203
Query: 125 IGSGKSKKEAKHNAAKSVLDQLI 147
+G GKSKKEA+ +AK + + ++
Sbjct: 204 VGKGKSKKEAEQESAKKLYELIL 226
>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
Length = 249
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 70 RLNTGDRTPV----SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVA 124
++N+G + V S +QEL+ R +Y ++Q +G + F R+ L E +
Sbjct: 164 KINSGAFSHVMDFKSQLQELVQRDSAGTIEYGILQEKGPAHNREFVSRVCLNGEE---LG 220
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
IG+G+SKKEA+ +AA+ L++L
Sbjct: 221 IGTGRSKKEAEQHAAQMALEKL 242
>gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C]
gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389]
gi|122425284|sp|Q1RHA2.1|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043340|sp|A8GYE2.1|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C]
gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389]
Length = 227
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
+P LQE ++ P+Y + G+ H FTV +N Y++ G G S K A++ AA
Sbjct: 158 DPKTALQEWAQSKDHHIPIYRLIKREGVAHLSTFTVSVKINGYEQTGKGHSIKEAEKNAA 217
Query: 227 ---LNMLKFL 233
L+ LK L
Sbjct: 218 RELLHKLKLL 227
>gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Ailuropoda melanoleuca]
Length = 1144
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ PV+ + E + + G++ ++ L+ EG ++P F+Y +++ + + S SKK AK
Sbjct: 560 KNPVTTLLECVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGAHT---FPTASAPSKKVAK 616
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQKENLFK-------------------VEPNPVG 170
AA+ + L G D +L F + NPVG
Sbjct: 617 QMAAEEAVKALHGEASSSAPADPQLGGTNTESFDNLESGMPNKVRRIGELVRYLNTNPVG 676
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 677 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 735
Query: 230 LKFL 233
L+ L
Sbjct: 736 LRVL 739
>gi|385799690|ref|YP_005836094.1| RNAse III [Halanaerobium praevalens DSM 2228]
gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
Length = 237
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 80 SLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QE++ G P+YE+I EG + F + + ES + G G SKKEA+ A
Sbjct: 169 TMLQEVIQDMGNFRPEYEVIDEEGPDHNKTFIVAVKMNEES---LGSGQGSSKKEAEQEA 225
Query: 139 AKSVLDQL 146
AK LD+L
Sbjct: 226 AKVALDKL 233
>gi|255004592|ref|ZP_05279393.1| ribonuclease III [Anaplasma marginale str. Virginia]
Length = 232
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 78 PVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P + +QE + RG A P Y+L+ G ++P+F +S+ + +G+G SKK A+
Sbjct: 162 PKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVEVSIQEHGNV---LGTGSSKKLAEQ 218
Query: 137 NAAKSVLDQL 146
AAK +L ++
Sbjct: 219 EAAKLMLQKI 228
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE-GMGKSKKIAKREA 225
+P LQE R W P+Y+ +G H+ +F V + + G G SKK+A++EA
Sbjct: 161 DPKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEA 220
Query: 226 ALNMLKFLETVP 237
A ML+ + +P
Sbjct: 221 AKLMLQKITELP 232
>gi|117924215|ref|YP_864832.1| ribonuclease III [Magnetococcus marinus MC-1]
gi|189043326|sp|A0L633.1|RNC_MAGSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|117607971|gb|ABK43426.1| RNAse III [Magnetococcus marinus MC-1]
Length = 246
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 22/132 (16%)
Query: 122 YVAIGSGKSKKEA--KHNAAKSVLDQLIG------------RDDEKLMCQKENLFKVEPN 167
Y+ +G G++K K++ + L+ L+G R ++L + + +EP
Sbjct: 108 YLRMGRGEAKSGGREKYSILGNALEALLGAIYLDGGFEAAERVVDRLFAHQ--VAGIEPE 165
Query: 168 PVGQ-----LQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEEGMGKSKKIA 221
G+ LQE R P+Y G PHER+F V C G G+SK+ A
Sbjct: 166 QQGKDYKTLLQEYLQARGEALPIYAVLSAEGPPHERVFVVSCHPREQLCGHGQGRSKREA 225
Query: 222 KREAALNMLKFL 233
++ AA L+ L
Sbjct: 226 EQHAAQQALELL 237
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 80 SLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+L+QE L RG A P Y ++ EG +E +F +S +L G G+SK+EA+ +A
Sbjct: 173 TLLQEYLQARGEALPIYAVLSAEGPPHERVFV--VSCHPREQL-CGHGQGRSKREAEQHA 229
Query: 139 AKSVLDQLIGRDDE 152
A+ L+ LI ++E
Sbjct: 230 AQQALELLIESENE 243
>gi|402586624|gb|EJW80561.1| double-stranded RNA binding protein, partial [Wuchereria bancrofti]
Length = 465
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-------- 146
+ +++ EG ++ + R L S R+ A G G SKK AK NA +L +L
Sbjct: 168 FLVLKEEGPAHDRHYLLRCKLISAERVISADGEGSSKKIAKQNACSLMLTKLQSVESSPI 227
Query: 147 -----IGRDDEKLMCQKE-------NLFKVEP------NPVGQLQEACMTRKWPPPVYET 188
+ + +K+ KE K+ P NPV +L + RK P ++
Sbjct: 228 FIAAAMLKSQKKIGAPKELKRKTISKDMKMNPEYGHQINPVSRLMQVMQARKQNEPKFQL 287
Query: 189 EETTGLPHERMF---TVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQ 245
G + F +C + + EG+G +KK+AKR AA +L + V P K
Sbjct: 288 VAERGQSRYKEFVMEVICD--DGLRCEGIGPNKKLAKRAAAEAVLARIGYVK---PMPKP 342
Query: 246 GEDVDEKGESNGLKHTHDSTF 266
G+ + +K ++ H F
Sbjct: 343 GKSLLKKKTEEYVQRPHIGMF 363
>gi|319405458|emb|CBI79077.1| ribonuclease III [Bartonella sp. AR 15-3]
Length = 235
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 17/97 (17%)
Query: 70 RLNTGDRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
++N G R + +QE + A P Y+++Q G ++PIF +S+ + IG G
Sbjct: 149 KMNAGRRDAKTELQEWAHTQDNAQPHYQVVQRYGPDHDPIFIVEVSICGYA---PEIGRG 205
Query: 129 KSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
SK++A+ +AA+ +L ++E ++K+E
Sbjct: 206 SSKRQAERDAAERIL-------------RREGIWKIE 229
>gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066]
gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066]
Length = 233
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 64 ARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLY 122
+RL+ + + P S +QELL S+ P+Y+++ I G N+ +F + + S +
Sbjct: 148 SRLKTINPKVNQKDPKSSLQELLQSQHKPLPQYKVVNISGTDNDQVFTVEVCVEGVSEKF 207
Query: 123 VAIGSGKSKKEAKHNAAKSVLD 144
G G SK+ A+ AA+ +LD
Sbjct: 208 S--GKGSSKRRAEQVAAQHLLD 227
>gi|163783627|ref|ZP_02178616.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
gi|159881120|gb|EDP74635.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
Length = 222
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
+E +R + + +++QE+ +R P Y +I +EG + F S+ S A
Sbjct: 141 IETIRSHRIRKDYKTMLQEITQKRWRERPHYRVISVEGPEHAKTFTVESSIKGVS----A 196
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
+G GKSKKEA+ AAK ++++L
Sbjct: 197 VGRGKSKKEAEQEAAKRLVEKL 218
>gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus]
Length = 243
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREA 225
+P LQE K P P YE ++ TG H FT+ Y+ Y + SKK+A+++A
Sbjct: 167 DPKTSLQEWTQKNKLPLPKYELKKQTGPAHNPEFTISVYIKNYGRVSACASSKKVAEQKA 226
Query: 226 A 226
A
Sbjct: 227 A 227
>gi|345494313|ref|XP_003427268.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Nasonia
vitripennis]
Length = 379
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 32/70 (45%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
+E NPV LQE M R P Y T H F + N +G+G SKK AK
Sbjct: 1 MEKNPVSFLQEYTMQRMKVIPEYTIISQTTGTHINSFNMRVSFNGCSADGVGSSKKEAKL 60
Query: 224 EAALNMLKFL 233
AA+ M+ L
Sbjct: 61 NAAMKMINML 70
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 75 DRTPVSLMQEL-LSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
++ PVS +QE + R P+Y +I + F R+S S A G G SKKE
Sbjct: 2 EKNPVSFLQEYTMQRMKVIPEYTIISQTTGTHINSFNMRVSFNGCS----ADGVGSSKKE 57
Query: 134 AKHNAAKSVLDQL 146
AK NAA +++ L
Sbjct: 58 AKLNAAMKMINML 70
>gi|296089026|emb|CBI38729.3| unnamed protein product [Vitis vinifera]
Length = 227
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV----YKEEGMGK---SKKIAKRE 224
L + C+ R WP PVY G H + FT VN + +E +G+ S K AK
Sbjct: 154 LNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKAKDS 213
Query: 225 AALNMLKFL 233
AA+ +L+ L
Sbjct: 214 AAVLLLELL 222
>gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group]
gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group]
gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group]
gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group]
Length = 344
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ T D PV+++ EL + G +++ Q G +F + E V IGS
Sbjct: 229 IITAETIDEQPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVF-----VAGE---LVGIGS 280
Query: 128 GKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEA-------CMTRK 180
+ K AK NAA+ +L G + L N E +G+L+E C +
Sbjct: 281 SEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGLGDE---IGELRECKQKLNEQCSRQN 337
Query: 181 WPPPVYE 187
WP P+++
Sbjct: 338 WPKPIFK 344
>gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
Length = 232
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 72 NTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS 130
TGD + +QE + + P+Y+L++ +G + +F+ I + ++Y IG+GKS
Sbjct: 160 GTGDYKTI--LQEFVQGKYKKMPEYKLLRTKGPDHNKVFE--ICVRWNDKIY-GIGTGKS 214
Query: 131 KKEAKHNAAKSVLDQL 146
KKEA+ +AAK L++L
Sbjct: 215 KKEAEKHAAKEALEKL 230
>gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21]
gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21]
Length = 232
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIAKREAA 226
+LQE K P Y+ +E +G H++ FTV Y+ EG+GKSKK A+++AA
Sbjct: 165 ELQEKARLVKGELPRYQLKEVSGPDHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAA 221
>gi|90407379|ref|ZP_01215564.1| ribonuclease III [Psychromonas sp. CNPT3]
gi|90311530|gb|EAS39630.1| ribonuclease III [Psychromonas sp. CNPT3]
Length = 231
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEEGMGKSKKIAKR 223
+ +P +LQE +RK P+YE E G H + FT+ C + +G G S++ A++
Sbjct: 157 QKDPKTRLQEHLQSRKQGLPLYEVLEIRGEAHNQRFTMSCIIDGIEAVQGQGTSRRKAEQ 216
Query: 224 EAALNML 230
AA ML
Sbjct: 217 IAAEKML 223
>gi|195027427|ref|XP_001986584.1| GH20445 [Drosophila grimshawi]
gi|193902584|gb|EDW01451.1| GH20445 [Drosophila grimshawi]
Length = 1053
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHER----MFTVCAYVNVYKEEGMGKSKKIAK 222
NP+ +L + TRK P++E G R + VCA N+ + G G SKK+AK
Sbjct: 739 NPITKLIQLQQTRKEKEPIFELIAKNGNESSRRREFVIEVCASGNIAR--GTGNSKKLAK 796
Query: 223 REAALNMLKFLE 234
R AA +L+ LE
Sbjct: 797 RNAAQALLELLE 808
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QEL+ R G +Y +++ +G + F R+SL + + IG GKSKKEA+ +A
Sbjct: 176 SQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQE---LGIGVGKSKKEAEQHA 232
Query: 139 AKSVLDQL--IGRD 150
A+ L +L IG++
Sbjct: 233 AQMALQKLKTIGKE 246
>gi|431794580|ref|YP_007221485.1| ribonuclease III [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784806|gb|AGA70089.1| ribonuclease III [Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 262
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
EV + N GD +++QE R T Y ++ EG + F + L R G
Sbjct: 182 EVAQGNYGDYK--TMLQEKAQREETEVSYRILAEEGPDHNKRFTAGVYLQGSLR---GKG 236
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRDD 151
SG++KKEA+ AA+ VLD++ G ++
Sbjct: 237 SGRTKKEAEQRAAQQVLDEMGGENN 261
>gi|397691446|ref|YP_006528700.1| ribonuclease III [Melioribacter roseus P3M]
gi|395812938|gb|AFN75687.1| ribonuclease III [Melioribacter roseus P3M]
Length = 254
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKR 223
+ N GQL E ++K P Y TG H++ F V +VN K G GK+KK A++
Sbjct: 178 DQNYKGQLLELTHSKKISSPRYVVVSETGPQHDKEFVVDVFVNNEKLGSGKGKNKKTAEQ 237
Query: 224 EAALNMLKFLETVP 237
AA + L ++ P
Sbjct: 238 NAAKDALSKIKDAP 251
>gi|319404018|emb|CBI77606.1| ribonuclease III [Bartonella rochalimae ATCC BAA-1498]
Length = 227
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 70 RLNTGDRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
++N G R + +QE + +A P Y+++Q G ++P+F +S+ + IG G
Sbjct: 149 KMNAGRRDAKTELQEWAHTQDSAQPYYQVVQRYGPDHDPVFMVEVSICGYA---PEIGRG 205
Query: 129 KSKKEAKHNAAKSVL 143
SK++A+ +AA+ +L
Sbjct: 206 SSKRQAERDAAERIL 220
>gi|395532085|ref|XP_003768102.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Sarcophilus harrisii]
Length = 1151
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 33/187 (17%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+ P+S++ E + + G+ ++ LI EG ++P FKY + + S++ SKK AK
Sbjct: 558 KNPISVLMEHVQKSGSTCEFLLISQEGPAHDPKFKYCVKMGSQT---FPTMMANSKKAAK 614
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKENL--FKVEP--------------------------N 167
AA+ + L G + +++N+ F P N
Sbjct: 615 QMAAEVAVKALCGDPNLTPWSRQQNIDYFSDPPAHFAGLGEPTPSKAKKVGDLIKYLNAN 674
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAA 226
P+ L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 675 PISGLFEYARSNGF-AAEFKLVDQSGPPHEPKFIYQAKVGGRWFPAVSAHSKKQGKQEAA 733
Query: 227 LNMLKFL 233
L+ L
Sbjct: 734 DAALRVL 740
>gi|374584694|ref|ZP_09657786.1| Ribonuclease 3 [Leptonema illini DSM 21528]
gi|373873555|gb|EHQ05549.1| Ribonuclease 3 [Leptonema illini DSM 21528]
Length = 244
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 78 PVSLMQELLSRR-GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P S +QEL+ ++ T P YEL+ EG ++ F YR+ + S +A G G S+K A+
Sbjct: 176 PKSALQELVQKQFRTHPVYELVSQEGPDHKREFVYRVVIDSRE---IARGMGSSRKRAER 232
Query: 137 NAAKSVLDQL 146
AA LD L
Sbjct: 233 QAAIRALDLL 242
>gi|341898891|gb|EGT54826.1| CBN-STAU-1 protein [Caenorhabditis brenneri]
Length = 713
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 123 VAIGSGKSKKEAKHNAAKSVLDQL--IGRDDEKLMCQKENLFKVEPNPVGQ-------LQ 173
+A G G S AK +AA L L + R+ ++ + EN+ + PV + +
Sbjct: 220 IATGLGDSFLSAKQDAAIKALAVLTPLMREQQQNIVNNENISTEDVVPVHKQKSVISDIH 279
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEE-----GMGKSKKIAKREAAL 227
E K ++E + G PH+R + V CA+V KE G GK KK A++EA
Sbjct: 280 ERAHQLKLSV-IFEILKEEGPPHDRQYVVRCAFVTSTKEVQAEAIGKGKKKKFAQQEACT 338
Query: 228 NMLKFLE 234
+LK +E
Sbjct: 339 QLLKTVE 345
>gi|17555186|ref|NP_499265.1| Protein RDE-4 [Caenorhabditis elegans]
gi|458490|emb|CAA83012.1| Protein RDE-4 [Caenorhabditis elegans]
gi|21912830|gb|AAL61544.1| RNA interference promoting factor [Caenorhabditis elegans]
Length = 385
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 88/223 (39%), Gaps = 36/223 (16%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
N VG+LQE K P+Y E++ ER +C N K G+ KK AK AA
Sbjct: 169 NWVGKLQEKSQKSKLQAPIY--EDSKNERTERFLVICTMCN-QKTRGIRSKKKDAKNLAA 225
Query: 227 LNMLKFLETVPIEIPEKKQGEDVDE-----------KGESNGLKHTHDSTFLTPQILKKI 275
M K LE IE E DV E + +++ +K H + K+
Sbjct: 226 WLMWKALED-GIESLESYDMVDVIENLEEAEHLLEIQDQASKIKDKHSALIDILSDKKRF 284
Query: 276 QQY---HTVFSQKTKG---PLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEE 329
Y V S T G LLE +S R L+ DP D+L+ EE
Sbjct: 285 SDYSMDFNVLSVSTMGIHQVLLE--ISFRRLVS--PDP--------DDLEMGAEHTQTEE 332
Query: 330 KSKADGFQSLLQLTTTPVT---VFCGTGASIEVAKIEAVYRAL 369
KA + L+ P + VF G G+S E AK A A+
Sbjct: 333 IMKATAEKEKLRKKNMPDSGPLVFAGHGSSAEEAKQCACKSAI 375
>gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+R +SL+ E ++G + + ++ +G + P F Y++S+ +G GK+ KEA
Sbjct: 225 ERNYISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHK---YPVGEGKTAKEA 281
Query: 135 KHNAAK 140
+ NAA+
Sbjct: 282 RQNAAQ 287
>gi|374338458|ref|YP_005095172.1| ribonuclease III [Streptococcus macedonicus ACA-DC 198]
gi|372284572|emb|CCF02857.1| Ribonuclease III [Streptococcus macedonicus ACA-DC 198]
Length = 228
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 186 YETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIAKREAALNMLKFLE 234
Y +G H ++F V Y+N K +G+G+SKK+A+++AA N L L+
Sbjct: 179 YRVSNESGPAHAKVFEVTVYINDEAKSQGIGRSKKLAEQDAAKNALALLQ 228
>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
Length = 256
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE C K P PVY + TG H++ F+ A V + G G +KK+A+++AA
Sbjct: 180 LQELCAELKAPMPVY-SATATGPEHDQTFSAVATVAGLSVGNGQGHNKKLAEQQAAQEAC 238
Query: 231 KFLETVPI 238
+ L P+
Sbjct: 239 QTLRETPL 246
>gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+R +SL+ E ++G + + ++ +G + P F Y++S+ +G GK+ KEA
Sbjct: 225 ERNYISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHK---YPVGEGKTAKEA 281
Query: 135 KHNAAK 140
+ NAA+
Sbjct: 282 RQNAAQ 287
>gi|384085608|ref|ZP_09996783.1| ribonuclease 3 [Acidithiobacillus thiooxidans ATCC 19377]
Length = 226
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE R P P+Y E G HER F C+ + E S++ A+++A
Sbjct: 153 DPKTRLQEFLQGRGRPLPIYTLIEEKGQAHERRFVARCSVPGIEPTEAEDGSRRKAEQQA 212
Query: 226 ALNMLKFLETVP 237
A ML L+ P
Sbjct: 213 ATLMLTQLQNTP 224
>gi|359687900|ref|ZP_09257901.1| ribonuclease III [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751524|ref|ZP_13307810.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
gi|418758724|ref|ZP_13314906.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384114626|gb|EIE00889.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274127|gb|EJZ41447.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
Length = 268
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 112 RISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG--------RDDEKLMCQK----- 158
++ LTS YV +G G+ + A+ ++ + L+G EK + +
Sbjct: 131 KLGLTS----YVLLGKGEGQGGAQKKLGANLFESLVGAIYLDQGMEAAEKFILEHLIDYI 186
Query: 159 ENLFKVE--PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMG 215
+N KV + LQE C + P Y + G HE+ F V + + + EG G
Sbjct: 187 KNSDKVREATDYKSVLQEICQKKFKLLPSYRLLKEVGPDHEKTFYVSVSIRDKFSAEGKG 246
Query: 216 KSKKIAKREAALNMLKFLE 234
K+KK A+++AA +LK L+
Sbjct: 247 KNKKFAEQDAAKQLLKSLK 265
>gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052]
gi|189043303|sp|A6LSM2.1|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052]
Length = 232
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QELL + G +YEL + EG + K+ ++ + +L + GSG SKKEA+ NAAK
Sbjct: 165 LQELLQKDGEVVIQYELTKFEGPPHRR--KFFTNVVIDKKL-MGEGSGYSKKEAEQNAAK 221
Query: 141 SVLDQLIGRDD 151
LD L G+ +
Sbjct: 222 QALDILEGKHE 232
>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
Length = 256
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE C K P PVY + TG H++ F+ A V + G G +KK+A+++AA
Sbjct: 180 LQELCAELKAPMPVY-SATATGPEHDQTFSAVATVAGLTVGNGQGHNKKLAEQQAAQEAC 238
Query: 231 KFLETVPI 238
+ L P+
Sbjct: 239 QTLRETPL 246
>gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
gi|226741373|sp|B4U7T8.1|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
Length = 232
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 179 RKWPP-PVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+KW P+Y G H + FTV + G G SKK A++EAA NML+ ++
Sbjct: 169 KKWKERPIYNVISVEGPEHRKTFTVECLFKDLRTTGKGNSKKYAEQEAAKNMLQIIQ 225
>gi|17046379|gb|AAL34500.1|AF380182_1 SON DNA binding protein isoform D [Homo sapiens]
Length = 147
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 25/137 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 21 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 58
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 59 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 117
Query: 224 EAALNMLKFLETVPIEI 240
AA +L+ + VP ++
Sbjct: 118 TAATVVLQAMGLVPKDL 134
>gi|68533781|gb|AAH99038.1| LOC398937 protein, partial [Xenopus laevis]
Length = 380
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 186 YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
+E + TG PH + F V + G GKSKKI+K+ AA+ +L+ L +P
Sbjct: 310 FEVTKETGPPHMKSFVTKVIVGEFLGNGEGKSKKISKKNAAIAVLEELRKLP 361
>gi|406978407|gb|EKE00379.1| Ribonuclease III [uncultured bacterium]
Length = 230
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 127 SGKSKKEAKHNAAKSVLDQLI---GRDDEKLMCQKENLFKVE--------PNPVGQLQEA 175
G+ ++ N ++VL L G D + ++E L+KVE + + QE
Sbjct: 112 GGRQREYILANTFEAVLGALFIEKGIDFCREFLERELLYKVEEIVKSEGYKDSKSKFQET 171
Query: 176 CMTRKWPPPVYETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIAKREAALNML 230
+ P YE ++ G H++ F V YV+ EG G+SK+ A++ AA N L
Sbjct: 172 AQEKFGVTPSYEVLDSWGADHDKTFKVGVYVDKKLMGEGEGRSKQKAEQAAAENAL 227
>gi|170586588|ref|XP_001898061.1| Double-stranded RNA binding motif family protein [Brugia malayi]
gi|158594456|gb|EDP33040.1| Double-stranded RNA binding motif family protein [Brugia malayi]
Length = 790
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-------- 146
+ +++ EG ++ + R L S R+ A G G SKK AK NA +L +L
Sbjct: 347 FLVLKEEGPAHDRHYLLRCKLISAERVISADGEGSSKKIAKQNACSLMLTKLQSVESSPI 406
Query: 147 -----IGRDDEKLMCQKE-------NLFKVEP------NPVGQLQEACMTRKWPPPVYET 188
+ + +K+ KE K+ P NPV +L + RK P ++
Sbjct: 407 FIAAAMLKSQKKIGAPKELKRRTISKDMKMNPEYGHQINPVSRLMQIMQARKQNEPKFQL 466
Query: 189 EETTGLPHERMF---TVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQ 245
G + F +C + + EG+G +KK+AKR AA +L + V P K
Sbjct: 467 VAERGQSRYKEFVMEVICD--DGLRCEGIGPNKKLAKRAAAEAVLARIGYVK---PMPKP 521
Query: 246 GEDVDEKGESNGLKHTHDSTF 266
G+ + +K ++ H F
Sbjct: 522 GKSLLKKKAKEYVQRPHIDMF 542
>gi|374849967|dbj|BAL52968.1| ribonuclease III [uncultured candidate division OP1 bacterium]
gi|374856382|dbj|BAL59236.1| ribonuclease III [uncultured candidate division OP1 bacterium]
Length = 230
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 80 SLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAA 139
+L+QE ++ P Y L+ EG + F R+ + + A+G G+SKK A+ AA
Sbjct: 162 TLLQEWAQQQHQKPVYTLVASEGQDHCKEFTVRVEVNG----FSALGKGRSKKAAEQEAA 217
Query: 140 KSVLDQLIG 148
+ + QL+G
Sbjct: 218 RQLYTQLLG 226
>gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii
F0254]
gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254]
Length = 243
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 73 TGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
TGD V +QE + + P+Y+L+ +G ++ +F+ IS++ ++Y +G GKSK
Sbjct: 163 TGDYKTV--LQEFVQGKYRKMPEYKLLNTKGPDHDKVFE--ISVSWNDKIY-GVGIGKSK 217
Query: 132 KEAKHNAAKSVLDQL 146
KEA+ +AAK L +L
Sbjct: 218 KEAEKHAAKEALVKL 232
>gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 567
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
+P LQE P+Y + G H FTV V Y++ G G S K A++ AA
Sbjct: 158 DPKTALQEWAQASDHHLPIYRLIKREGAAHSSTFTVLVKVKDYEQTGTGHSIKEAEKNAA 217
Query: 227 LNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHT 261
++L L+ +P+ E+ E + + +T
Sbjct: 218 RSLLHRLKMTNRHLPKPAYREEFKGDTECSTVAYT 252
>gi|392948722|ref|ZP_10314325.1| Ribonuclease III [Lactobacillus pentosus KCA1]
gi|392435999|gb|EIW13920.1| Ribonuclease III [Lactobacillus pentosus KCA1]
Length = 229
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L R G A +Y+LI+ EG NE Y +++ ++ + + G G SKKEA+ +AA+
Sbjct: 166 LQEYLQRDGDVAIEYQLIEQEGPANER--SYEVAVVADGQK-IGEGRGHSKKEAEQSAAR 222
Query: 141 SVLDQL 146
QL
Sbjct: 223 QAYSQL 228
>gi|195435718|ref|XP_002065826.1| GK18553 [Drosophila willistoni]
gi|194161911|gb|EDW76812.1| GK18553 [Drosophila willistoni]
Length = 248
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 164 VEPNP--VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIA 221
++PN +L E C + P PV+E E P+ F C + K G+ KK A
Sbjct: 31 IDPNRDMFKELCEFCKSHDMPYPVFEIVEQNRNPNAPKFVACCTLTSIKRYGISDKKKEA 90
Query: 222 KREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLK 259
++AA +L + +D D+ ESNG+K
Sbjct: 91 HQKAASAILSVV------------SKDADKLSESNGVK 116
>gi|148225849|ref|NP_001086918.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis]
gi|83318414|gb|AAI08851.1| Stau2-b protein [Xenopus laevis]
Length = 689
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 23/203 (11%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +SL+ E+ +R +E+I+ G + F R+ + + A G G SKK
Sbjct: 287 ANKSEISLVFEISLKRNLPLSFEVIKESGPPHMKSFVTRVMVGE----FTAEGEGNSKKL 342
Query: 134 AKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTR 179
AK AA +VL +L I + + + +N+ K P NP+ +L + +
Sbjct: 343 AKRRAAAAVLQELRKLPPLPVIEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAK 402
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETV 236
K P Y G+ R F + V G G +KK AKR AA M L + +
Sbjct: 403 KEKEPEYVLLSERGIQRRREFIMQVKVGEEAATGTGPNKKTAKRNAAEAMLLQLGYKASS 462
Query: 237 PIEIPEKKQGE--DVDEKGESNG 257
P+ K+GE D DE+ N
Sbjct: 463 PVVEKSGKRGETPDWDEQNSGNA 485
>gi|387927066|ref|ZP_10129745.1| ribonuclease III [Bacillus methanolicus PB1]
gi|387589210|gb|EIJ81530.1| ribonuclease III [Bacillus methanolicus PB1]
Length = 253
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 70 RLNTGDRTPV----SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVA 124
++N G + V S +QEL+ R G +Y ++Q +G + F R+SL +++ +
Sbjct: 164 KINAGAFSHVMDYKSQLQELVQRDGAGTIEYRILQEKGPAHNREFVSRVSL---NKVELG 220
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
G G+SKKEA+ +AA+ L++L
Sbjct: 221 TGIGRSKKEAEQHAAQMALEKL 242
>gi|383502172|ref|YP_005415531.1| ribonuclease III [Rickettsia australis str. Cutlack]
gi|378933183|gb|AFC71688.1| ribonuclease III [Rickettsia australis str. Cutlack]
Length = 227
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
+P LQE + P+Y G H FTV V Y++ G G S K A++ AA
Sbjct: 158 DPKTALQEWAQASRHHLPIYRLINREGAAHSSTFTVLVKVKDYEQTGTGHSIKEAEKNAA 217
Query: 227 LNMLKFLETV 236
++L L+ V
Sbjct: 218 RDLLHRLKDV 227
>gi|339636847|emb|CCC15654.1| ribonuclease 3 [Lactobacillus pentosus IG1]
Length = 229
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L R G A +Y+LI+ EG NE Y +++ ++ + + G G SKKEA+ +AA+
Sbjct: 166 LQEYLQRDGDVAIEYQLIEQEGPANER--SYEVAVVADGQK-IGEGRGHSKKEAEQSAAR 222
Query: 141 SVLDQL 146
QL
Sbjct: 223 QAYSQL 228
>gi|334326297|ref|XP_001366516.2| PREDICTED: interleukin enhancer-binding factor 3 [Monodelphis
domestica]
Length = 899
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 84/221 (38%), Gaps = 57/221 (25%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVL---------- 143
+Y+L+ G ++ PIF + + S + A SG SKK AK + A VL
Sbjct: 413 QYKLVSQTGPVHAPIFTMSVEVDGSS--FEA--SGPSKKTAKLHVAVKVLQDMGLPTGAE 468
Query: 144 --DQLIGRDDEKLMCQK---------------------------ENLFKVEP-------N 167
D G D + QK EN+ + P N
Sbjct: 469 GKDSNKGEDSAEETEQKPVVVAPPPVVETVAAPSAAFPSPDQTSENVKQQGPILTKHGKN 528
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PV +L E K YE TG H++ F + V+ K +G G +KK+AK AAL
Sbjct: 529 PVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAFAAL 583
Query: 228 NML-KFLETVPIEI-PEKKQGEDVDEKGESNGLKHTHDSTF 266
L K P+ + P KK+ V +G H+ F
Sbjct: 584 TALEKLFPDAPVALEPNKKKRAPVPVRGGPKFAAKQHNPGF 624
>gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group]
gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group]
Length = 350
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ T D PV+++ EL + G +++ Q G +F + E V IGS
Sbjct: 235 IITAETIDEQPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVF-----VAGE---LVGIGS 286
Query: 128 GKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEA-------CMTRK 180
+ K AK NAA+ +L G + L N E +G+L+E C +
Sbjct: 287 SEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGLGDE---IGELRECKQKLNEQCSRQN 343
Query: 181 WPPPVYE 187
WP P+++
Sbjct: 344 WPKPIFK 350
>gi|452974503|gb|EME74323.1| ribonuclease III [Bacillus sonorensis L12]
Length = 249
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QE + R G +Y+++Q +G + F+ +SL E + +GSG+SKKEA+ +A
Sbjct: 178 SQLQEFVQRDGRGTLEYKILQEKGPAHNREFEANVSLKGEV---LGVGSGRSKKEAEQHA 234
Query: 139 AKSVLDQL 146
A+ L +L
Sbjct: 235 AQEALAKL 242
>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
gi|81347639|sp|Q5L0Q3.1|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
Length = 246
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QEL+ R G+ +Y +++ +G + F R++L + + IG G+SKKEA+ +A
Sbjct: 176 SQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQE---LGIGVGRSKKEAEQHA 232
Query: 139 AKSVLDQLIGRDDE 152
A+ L+ L D +
Sbjct: 233 AQMALETLRAADQQ 246
>gi|387772294|ref|ZP_10128246.1| ribonuclease III [Haemophilus parahaemolyticus HK385]
gi|386907029|gb|EIJ71746.1| ribonuclease III [Haemophilus parahaemolyticus HK385]
Length = 222
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 76 RTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+ P + +QE L R+ P+Y++I I+G + FK + + ++ IG+ S+++A
Sbjct: 151 KDPKTRLQEFLQGRKLPLPEYDVIDIKGEAHNQTFKVTCKVKNVDEVFTGIGT--SRRKA 208
Query: 135 KHNAAKSVLDQLI 147
+ NAA+ VL+ LI
Sbjct: 209 EQNAAEKVLNVLI 221
>gi|334880638|emb|CCB81401.1| ribonuclease 3 [Lactobacillus pentosus MP-10]
Length = 231
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L R G A +Y+LI+ EG NE Y +++ ++ + + G G SKKEA+ +AA+
Sbjct: 166 LQEYLQRDGDVAIEYQLIEQEGPANER--SYEVAVVADGQK-IGEGRGHSKKEAEQSAAR 222
Query: 141 SVLDQL 146
QL
Sbjct: 223 QAYSQL 228
>gi|294626963|ref|ZP_06705554.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|294664535|ref|ZP_06729880.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292598823|gb|EFF42969.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292605697|gb|EFF49003.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 226
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + V + EG G S+++
Sbjct: 150 KAEKDPKTRLQEWLQARQLPLPTYVLISESGDEHAKQFHVACILEQPVARAEGQGTSRRL 209
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 210 AEQQAATLVIAQLDS 224
>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 246
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QEL+ R G +Y +++ +G + F R+SL + + IG GKSKKEA+ +A
Sbjct: 176 SQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQE---LGIGVGKSKKEAEQHA 232
Query: 139 AKSVLDQL 146
A+ L +L
Sbjct: 233 AQMALQKL 240
>gi|116620923|ref|YP_823079.1| RNAse III [Candidatus Solibacter usitatus Ellin6076]
gi|122255019|sp|Q027L3.1|RNC_SOLUE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116224085|gb|ABJ82794.1| RNAse III [Candidatus Solibacter usitatus Ellin6076]
Length = 271
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNML 230
LQE TR+ P P Y G H + FTV V + + G++KKIA + AA +
Sbjct: 177 LQELAQTRRLPQPRYSVVRERGPEHSKTFTVEVRVGKEWTAQAEGRTKKIAAQRAARGLY 236
Query: 231 KFLETVPI 238
+ L PI
Sbjct: 237 ERLMGDPI 244
>gi|406950556|gb|EKD80794.1| hypothetical protein ACD_40C00009G0005 [uncultured bacterium]
Length = 230
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 80 SLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
SL+QE+ SR + P Y LI G ++ F R+ + ES A G+GKSK+ A+ +A
Sbjct: 163 SLLQEIAQSRYKSTPLYTLISESGPDHDKQFVMRVEIGDES---YAQGTGKSKQTAQEDA 219
Query: 139 AKSVLDQL 146
AK+ L+ +
Sbjct: 220 AKNTLEMI 227
>gi|251765118|sp|Q6ATG6.2|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName:
Full=Ribonuclease III-like protein 2; Short=RNase
III-like protein 2
Length = 317
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ T D PV+++ EL + G +++ Q G +F + E V IGS
Sbjct: 202 IITAETIDEQPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVF-----VAGE---LVGIGS 253
Query: 128 GKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEA-------CMTRK 180
+ K AK NAA+ +L G + L N E +G+L+E C +
Sbjct: 254 SEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGLGDE---IGELRECKQKLNEQCSRQN 310
Query: 181 WPPPVYE 187
WP P+++
Sbjct: 311 WPKPIFK 317
>gi|111185526|gb|AAH60382.2| LOC398937 protein [Xenopus laevis]
Length = 426
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 186 YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
+E + TG PH + F V + G GKSKKI+K+ AA+ +L+ L +P
Sbjct: 287 FEVTKETGPPHMKSFVTKVIVGEFLGNGEGKSKKISKKNAAIAVLEELRKLP 338
>gi|50417953|gb|AAH77753.1| Stau2-B-prov protein [Xenopus laevis]
Length = 644
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 23/201 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+ + + A G G SKK A
Sbjct: 243 NKSEISLVFEISLKRNLPLSFEVIKESGPPHMKSFVTRVMVGE----FTAEGEGNSKKLA 298
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L I + + + +N+ K P NP+ +L + +K
Sbjct: 299 KRRAAAAVLQELRKLPPLPVIEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAKK 358
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+ R F + V G G +KK AKR AA M L + + P
Sbjct: 359 EKEPEYVLLSERGIQRRREFIMQVKVGEEAATGTGPNKKTAKRNAAEAMLLQLGYKASSP 418
Query: 238 IEIPEKKQGE--DVDEKGESN 256
+ K+GE D DE+ N
Sbjct: 419 VVEKSGKRGETPDWDEQNSGN 439
>gi|183986711|ref|NP_001116945.1| adenosine deaminase domain containing 1 (testis-specific) [Xenopus
(Silurana) tropicalis]
gi|170284982|gb|AAI61180.1| adad1 protein [Xenopus (Silurana) tropicalis]
Length = 584
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 17 INMPSTVSLDCNEVKVEENSPSRVLFDNNE-----IKQIPKVSTNNLPLEEAARLEVMRL 71
+N+ STVS C V+ + + N K + S ++LP + + V++
Sbjct: 31 VNLSSTVSTCCPYVEPDCGTAKVTQITGNFREPFLSKMVVPASLSSLPPRKVTKEFVVKY 90
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSE-SRLYVAIGSGKS 130
GD PVS + + + + E+ E +F + + + G G++
Sbjct: 91 RRGDLNPVSALYQFAQMQ----RMEIDLKETVTTGNVFGAYFAFCAVIDGIEYKTGMGQN 146
Query: 131 KKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNP 168
KKEAK NAA+ LD+L+ +D +L + NP
Sbjct: 147 KKEAKANAAQLALDELLLHEDSELTATHPESLNIMENP 184
>gi|319898692|ref|YP_004158785.1| ribonuclease III [Bartonella clarridgeiae 73]
gi|319402656|emb|CBI76202.1| ribonuclease III [Bartonella clarridgeiae 73]
Length = 234
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 70 RLNTGDRTPVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
++N G R + +QE + A P Y+++Q G ++PIF +S+ IG G
Sbjct: 149 KMNAGRRDAKTELQEWAHTKDRAHPHYQVLQRCGPDHDPIFVVEVSICG---FASEIGRG 205
Query: 129 KSKKEAKHNAAKSVL 143
SK++A+ +AA+ +L
Sbjct: 206 SSKRQAERDAAERIL 220
>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|448237348|ref|YP_007401406.1| ribonuclease 3 [Geobacillus sp. GHH01]
gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|445206190|gb|AGE21655.1| ribonuclease 3 [Geobacillus sp. GHH01]
Length = 246
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QEL+ R G+ +Y +++ +G + F R++L + + IG G+SKKEA+ +A
Sbjct: 176 SQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQE---LGIGVGRSKKEAEQHA 232
Query: 139 AKSVLDQLIGRDDE 152
A+ L+ L D +
Sbjct: 233 AQMALETLRAADQQ 246
>gi|359411403|ref|ZP_09203868.1| Ribonuclease 3 [Clostridium sp. DL-VIII]
gi|357170287|gb|EHI98461.1| Ribonuclease 3 [Clostridium sp. DL-VIII]
Length = 232
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L + G A +YEL + EG + K+ ++ + +L + GSG SKKEA+ NAAK
Sbjct: 165 LQEFLQKDGEVAIQYELTKFEGPPHRR--KFFTNVVIDKKL-MGEGSGYSKKEAEQNAAK 221
Query: 141 SVLDQLIG 148
LD L G
Sbjct: 222 QALDVLEG 229
>gi|348507385|ref|XP_003441236.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Oreochromis niloticus]
Length = 497
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 21/164 (12%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
V + E + + YE + +G ++ +F R + + + Y + G GK+KKEAK NA
Sbjct: 7 VGKLNEYAHKWHSGVSYEEVGSDGPPHDKVFNLRAVI--DGKAYPS-GEGKTKKEAKQNA 63
Query: 139 AKSVLDQL--IGRDD-------------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPP 183
AK L+ L +G D + ++ K+ F E N +G + C K
Sbjct: 64 AKKALESLSQLGHQDSVESRNNAAEASVQVVLSSKDTSF-TETNFIGLVNHYCQKTK-RS 121
Query: 184 PVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAA 226
Y+ G H+ +F + N G GKS K AK+ AA
Sbjct: 122 HSYDEVGRDGPSHKPLFFYKLKIDNKEYPVGEGKSIKEAKQNAA 165
>gi|195347707|ref|XP_002040393.1| GM19166 [Drosophila sechellia]
gi|194121821|gb|EDW43864.1| GM19166 [Drosophila sechellia]
Length = 602
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 150 DDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
D +K MC KE + + + N VG L E +Y+ E TG H +FT+ V+
Sbjct: 38 DPKKKMC-KERIPQPK-NTVGMLNELRHGL-----IYKLESQTGPVHAPLFTISVEVDDQ 90
Query: 210 KEEGMGKSKKIAKREAALNMLK 231
K G G+SKKIA+ EAA L+
Sbjct: 91 KYYGQGRSKKIARIEAAATALR 112
>gi|261492470|ref|ZP_05989024.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261496943|ref|ZP_05993311.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261307467|gb|EEY08802.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311833|gb|EEY12982.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 224
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 139 AKSVLDQLIGRDDEKLMCQKENLFK-VEP-----NPVGQLQEACMTRKWPPPVYETEETT 192
A LDQ + + EK+ +L K + P +P +LQE RK P P Y+ +
Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177
Query: 193 GLPHERMFTV-CAYVNVYKEE---GMGKSKKIAKREAALNMLKFLET 235
G H + F V C +NV EE G+G S++ A++ AA L ++T
Sbjct: 178 GEAHNQTFRVTCKVINV--EEVFIGIGTSRRKAEQNAAEKALAVVKT 222
>gi|348028526|ref|YP_004871212.1| ribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945869|gb|AEP29219.1| ribonuclease III [Glaciecola nitratireducens FR1064]
Length = 225
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRL 121
A+R+E + N + + +QE L SR+ P YE++ I G + F+ + T E
Sbjct: 139 ASRIEKLDPNRQIKDNKTQLQEFLQSRQLPLPNYEVVLISGKDHAQTFE--VDCTVEPLN 196
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLI 147
IG GKS+++A+ NAAK L+ L+
Sbjct: 197 TSQIGKGKSRRQAEQNAAKQTLEILL 222
>gi|222100439|ref|YP_002535007.1| ribonuclease III [Thermotoga neapolitana DSM 4359]
gi|254807907|sp|B9K9K8.1|RNC_THENN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|221572829|gb|ACM23641.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359]
Length = 240
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 82 MQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE++ R T P+Y L++ E +E +F + + E+ +A+G G++KKEA+ +AA+
Sbjct: 173 LQEIVQREHKTPPEYVLVRTEKNGSEKLFVVEVRVNDET---LAVGRGRTKKEAEKDAAR 229
Query: 141 SVLDQLIG 148
++L+
Sbjct: 230 KAYEKLVA 237
>gi|397507175|ref|XP_003846008.1| PREDICTED: LOW QUALITY PROTEIN: protein SON [Pan paniscus]
Length = 2436
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2310 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2347
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2348 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2406
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2407 TAATVVLQAMGLVP 2420
>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
Length = 247
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 80 SLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
L+QE L ++GT P Y ++ G + ++ +S ++ + GSGKSKKEA+ A
Sbjct: 166 GLLQEFLQKKGTELPIYRIVLESGEAHNKWYEVEVSWKNQ---VLGKGSGKSKKEAELRA 222
Query: 139 AKSVLDQLI 147
AK ++L+
Sbjct: 223 AKEAFEKLV 231
>gi|254360744|ref|ZP_04976892.1| ribonuclease III [Mannheimia haemolytica PHL213]
gi|452744321|ref|ZP_21944167.1| ribonuclease III [Mannheimia haemolytica serotype 6 str. H23]
gi|153091314|gb|EDN73288.1| ribonuclease III [Mannheimia haemolytica PHL213]
gi|452087566|gb|EME03943.1| ribonuclease III [Mannheimia haemolytica serotype 6 str. H23]
Length = 224
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 139 AKSVLDQLIGRDDEKLMCQKENLFK-VEP-----NPVGQLQEACMTRKWPPPVYETEETT 192
A LDQ + + EK+ +L K + P +P +LQE RK P P Y+ +
Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177
Query: 193 GLPHERMFTV-CAYVNVYKEE---GMGKSKKIAKREAALNMLKFLET 235
G H + F V C +NV EE G+G S++ A++ AA L ++T
Sbjct: 178 GEAHNQTFRVTCKVINV--EEVFIGIGTSRRKAEQNAAEKALAVVKT 222
>gi|427412473|ref|ZP_18902665.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
gi|425716280|gb|EKU79264.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
Length = 253
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QE + + G Y L+ G ++ IF + + E + Y + G+GKSKKEA+ NA
Sbjct: 178 TMLQEYVQQEGEKQIVYTLLSESGPDHDKIFCMEVRI--EGKAYGS-GTGKSKKEAEQNA 234
Query: 139 AKSVLDQLIGR 149
A+ LD LIG+
Sbjct: 235 AQVTLDYLIGK 245
>gi|390478200|ref|XP_002807816.2| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100390479
[Callithrix jacchus]
Length = 2365
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 25/137 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2239 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2276
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2277 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2335
Query: 224 EAALNMLKFLETVPIEI 240
AA +L+ + VP ++
Sbjct: 2336 TAATVVLQAMGLVPKDL 2352
>gi|198423460|ref|XP_002126266.1| PREDICTED: similar to SON DNA-binding protein [Ciona intestinalis]
Length = 140
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV--YKEEGMGKSKKIAKRE 224
+PV L E C RKW P ++ +G H+R F +N Y+ +KK+AK
Sbjct: 65 HPVSALMEICSKRKWSQPNFQLVHNSGPDHQRFFMFKVTINGQEYQPSTPSVNKKLAKAN 124
Query: 225 AALNMLKFLETVP 237
+A L+ + +P
Sbjct: 125 SASVALQGMGLIP 137
>gi|325915827|ref|ZP_08178126.1| RNAse III [Xanthomonas vesicatoria ATCC 35937]
gi|325537948|gb|EGD09645.1| RNAse III [Xanthomonas vesicatoria ATCC 35937]
Length = 226
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + + + EG G S+++
Sbjct: 150 KAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFHVACILEQPIARAEGQGTSRRL 209
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L+
Sbjct: 210 AEQQAAATVIAQLDV 224
>gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
Length = 347
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNML 230
LQE C R PPVYE E G HE++FT + G G++KK A+ +AA +
Sbjct: 274 LQELCARRGLRPPVYEVAE-AGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAGHAW 332
Query: 231 KFLETVPIEIP 241
+ + +P
Sbjct: 333 GVISGEDVALP 343
>gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
Length = 233
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 122 YVAIGSGKSKKEAKH------NAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------- 166
Y+ +GSG+ K K +A ++++ + D + C++ L P
Sbjct: 96 YLRLGSGELKSGGKRRESILADAVEAIIAA-VYLDSDFYRCEQITLALFAPAIAALPDVE 154
Query: 167 ---NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
+P +LQE +R P PVYE E G H ++FT+ A + S+K A++
Sbjct: 155 ALKDPKTRLQEYLQSRDLPLPVYELVEEKGPEHAKIFTISAKSERFCTTATASSRKKAEQ 214
Query: 224 EAA 226
AA
Sbjct: 215 AAA 217
>gi|148544383|ref|YP_001271753.1| ribonuclease III [Lactobacillus reuteri DSM 20016]
gi|184153747|ref|YP_001842088.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
gi|194466493|ref|ZP_03072480.1| Ribonuclease III [Lactobacillus reuteri 100-23]
gi|227363192|ref|ZP_03847326.1| ribonuclease III [Lactobacillus reuteri MM2-3]
gi|325682703|ref|ZP_08162219.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
gi|423335539|ref|ZP_17313314.1| ribonuclease III [Lactobacillus reuteri ATCC 53608]
gi|189043324|sp|A5VKP2.1|RNC_LACRD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|229564353|sp|B2G826.1|RNC_LACRJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|148531417|gb|ABQ83416.1| RNAse III [Lactobacillus reuteri DSM 20016]
gi|183225091|dbj|BAG25608.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
gi|194453529|gb|EDX42426.1| Ribonuclease III [Lactobacillus reuteri 100-23]
gi|227071798|gb|EEI10087.1| ribonuclease III [Lactobacillus reuteri MM2-3]
gi|324977053|gb|EGC14004.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
gi|337728769|emb|CCC03888.1| ribonuclease III [Lactobacillus reuteri ATCC 53608]
Length = 233
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L R G A +Y L++ G N+P FK ++ + + G G SKK A+ AA+
Sbjct: 166 LQEFLQRDGDIAIEYHLVEESGTENDPEFKVNVTANGDV---IGEGKGSSKKHAEMQAAQ 222
Query: 141 SVLDQL 146
LD +
Sbjct: 223 QALDNM 228
>gi|157825292|ref|YP_001493012.1| ribonuclease III [Rickettsia akari str. Hartford]
gi|189043339|sp|A8GM79.1|RNC_RICAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157799250|gb|ABV74504.1| ribonuclease III [Rickettsia akari str. Hartford]
Length = 227
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 146 LIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAY 205
+IG+ E+ + + +NL +P LQE P+Y + G H FTV
Sbjct: 140 IIGKLWEEFI-KIQNLTDYDPKTA--LQEWAQASSHHLPIYRLIKREGAAHSSTFTVLVK 196
Query: 206 VNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
V Y++ G G S K A++ AA ++L L+ V
Sbjct: 197 VKDYEQTGTGHSIKEAEKNAARDLLHRLQDV 227
>gi|344923148|ref|ZP_08776609.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
Length = 212
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE +R P YE TG H F + V+ + + GKS+K+A++EAA ML+
Sbjct: 147 LQEWTQSRGLGIPAYELVNQTGPAHAPEFEILLKVDDHSVKARGKSRKLAEQEAAKQMLQ 206
>gi|195454350|ref|XP_002074202.1| GK12745 [Drosophila willistoni]
gi|194170287|gb|EDW85188.1| GK12745 [Drosophila willistoni]
Length = 845
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 72 NTGDRTPVSLMQELLSR-RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS 130
N D+ PV ++ EL S+ + T P+Y L Q G + F + + + + Y S
Sbjct: 766 NNQDKHPVCVLNELTSKNKWTPPQYVLQQNTGPAHMRTFLFSVEINGQK--YTPSNGCNS 823
Query: 131 KKEAKHNAAKSVLDQL 146
KKEAK NAAK L L
Sbjct: 824 KKEAKLNAAKLCLQAL 839
>gi|119630222|gb|EAX09817.1| SON DNA binding protein, isoform CRA_d [Homo sapiens]
Length = 2482
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2356 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2393
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2394 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2452
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2453 TAATVVLQAMGLVP 2466
>gi|428306957|ref|YP_007143782.1| RNAse III [Crinalium epipsammum PCC 9333]
gi|428248492|gb|AFZ14272.1| RNAse III [Crinalium epipsammum PCC 9333]
Length = 227
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 53 VSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKY---ELIQIEGAI--NEP 107
VS N E+ RLE + GD L E L RR PK EL + A+ +
Sbjct: 23 VSENPGECEDNERLEFL----GDALLTFLSGEYLYRR--HPKMTEDELTRRRSALVDEKQ 76
Query: 108 IFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG-------RDDEKLMCQKEN 160
+ K+ I++ + R+ + G+ N S + ++G D E + E
Sbjct: 77 LAKFAIAVGIDLRMRLGKGAILDGGYQNANLISSTFEAVVGAYYLDNNSDIEAVRACVEP 136
Query: 161 LFKVEP----------NPVGQLQEACMTRKWP-PPVYETEETTGLPHERMFTVCAYVN-- 207
LF + P + + Q+ T P PP Y T G H+ F YV
Sbjct: 137 LFDLVPESSALSVVTVDAKNRFQQWVQTNITPKPPKYVTVSAGGTAHDPQFISQVYVGEK 196
Query: 208 VYKEEGMGKSKKIAKREAALNML 230
VY E G G+SKK A+++AA N L
Sbjct: 197 VYGE-GRGRSKKDAEKQAAENAL 218
>gi|399910407|ref|ZP_10778721.1| ribonuclease III [Halomonas sp. KM-1]
Length = 230
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRL 121
A RLE + L + P + +QE L SR+ P+Y+++ +EG ++ F + E
Sbjct: 140 AERLESIDLQDTQKDPKTRLQEFLQSRQSPLPRYDVVSVEGEAHDQTFT--VECHVELLA 197
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQL 146
+G+G S++ A+ AA+ L QL
Sbjct: 198 THTLGTGSSRRHAEQQAAELALLQL 222
>gi|301768411|ref|XP_002919630.1| PREDICTED: protein SON-like [Ailuropoda melanoleuca]
Length = 2336
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2210 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2247
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2248 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2306
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2307 TAATVVLQAMGLVP 2320
>gi|58581478|ref|YP_200494.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84623408|ref|YP_450780.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|75435762|sp|Q5H1R2.1|RNC_XANOR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|58426072|gb|AAW75109.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84367348|dbj|BAE68506.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 226
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + V + EG G S+++
Sbjct: 150 KAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFHVACILEQPVARAEGQGTSRRL 209
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 210 AEQQAATLVIAQLDS 224
>gi|403271818|ref|XP_003927803.1| PREDICTED: protein SON [Saimiri boliviensis boliviensis]
Length = 2419
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2293 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2330
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2331 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2389
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2390 TAATVVLQAMGLVP 2403
>gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
Length = 211
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE +R P YE TG H F + V+ + + GKS+K+A++EAA ML+
Sbjct: 147 LQEWTQSRGLGIPAYELVNQTGPAHAPEFEILLKVDDHSVKARGKSRKLAEQEAAKQMLQ 206
>gi|227544367|ref|ZP_03974416.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
gi|338202522|ref|YP_004648667.1| ribonuclease III [Lactobacillus reuteri SD2112]
gi|227185630|gb|EEI65701.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
gi|336447762|gb|AEI56377.1| ribonuclease III [Lactobacillus reuteri SD2112]
Length = 233
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L R G A +Y L++ G N+P FK ++ + + G G SKK A+ AA+
Sbjct: 166 LQEFLQRDGDIAIEYHLVEESGTENDPEFKVNVTANGDV---IGEGKGSSKKHAEMQAAQ 222
Query: 141 SVLDQL 146
LD +
Sbjct: 223 QALDNM 228
>gi|7229534|gb|AAF42866.1|AF225925_1 staufen [Musca domestica]
Length = 985
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQL---IGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKW 181
IG+G++ ++AKH+AA ++ L + + +K + +P+ + E + R
Sbjct: 534 IGTGRTIQQAKHDAAAQAIEALKEEMNNQQKDNEEEKNDEEGDNKSPISMVFEIGIKRNL 593
Query: 182 PPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
P ++ G H R FT V E G KKI+K++AA ML+ L+ +P
Sbjct: 594 PVD-FKILREDGPAHMRTFTTACIVGQIVTEAEGTGKKISKKKAAQKMLEELKKLP 648
>gi|395849039|ref|XP_003797144.1| PREDICTED: protein SON [Otolemur garnettii]
Length = 2418
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2292 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2329
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2330 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2388
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2389 TAATVVLQAMGLVP 2402
>gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36]
gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36]
Length = 223
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKKIAKREAALN 228
QLQE RK P P+Y+ E G H + FT+ + EG G S++ A++EAA
Sbjct: 158 QLQEWLQGRKQPLPLYQVVEVRGEAHNQEFTIHCVIEGLDHPVEGKGTSRRKAEQEAAQK 217
Query: 229 MLK 231
L+
Sbjct: 218 ALE 220
>gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1]
gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1]
Length = 232
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 60 LEEAARLEVMRLNTGDRTPV-SLMQELL--SRRGTAPKYELIQIEGAINEPIFKYRISLT 116
LE+ V L+ D T + +QEL+ +R T YEL++ G N P FK + +
Sbjct: 139 LEQTIFQHVNDLDYDDITDYKTTLQELIQADQRKTVT-YELLETSGPSNAPEFKVAV-IM 196
Query: 117 SESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150
E RL +G G SKK A+ AAK L++L D
Sbjct: 197 DEMRL--GVGKGTSKKRAEQQAAKDALNKLATSD 228
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 82 MQELLSRR-GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE+ +R + P+YE ++ G +E +F+ +++ R IG G+SKKEA+ AAK
Sbjct: 171 LQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQGVMR---GIGRGRSKKEAEQMAAK 227
Query: 141 SVLDQL 146
L QL
Sbjct: 228 EALTQL 233
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAA 226
QLQE C R P YET +G HE++F V + V + G G+SKK A++ AA
Sbjct: 170 QLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQGVMRGIGRGRSKKEAEQMAA 226
>gi|167427274|gb|ABZ80253.1| SON DNA-binding protein isoform F (predicted) [Callithrix jacchus]
Length = 2454
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2328 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2365
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2366 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2424
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2425 TAATVVLQAMGLVP 2438
>gi|300858757|ref|YP_003783740.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
gi|375288938|ref|YP_005123479.1| ribonuclease III [Corynebacterium pseudotuberculosis 3/99-5]
gi|379715635|ref|YP_005303972.1| ribonuclease III [Corynebacterium pseudotuberculosis 316]
gi|383314516|ref|YP_005375371.1| Ribonuclease III [Corynebacterium pseudotuberculosis P54B96]
gi|384504932|ref|YP_005681602.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002]
gi|384507029|ref|YP_005683698.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231]
gi|384509117|ref|YP_005685785.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19]
gi|384511207|ref|YP_005690785.1| Ribonuclease III [Corynebacterium pseudotuberculosis PAT10]
gi|385807817|ref|YP_005844214.1| Ribonuclease III [Corynebacterium pseudotuberculosis 267]
gi|386740669|ref|YP_006213849.1| Ribonuclease III [Corynebacterium pseudotuberculosis 31]
gi|387136856|ref|YP_005692836.1| ribonuclease III [Corynebacterium pseudotuberculosis 42/02-A]
gi|387138932|ref|YP_005694911.1| Ribonuclease III [Corynebacterium pseudotuberculosis CIP 52.97]
gi|387140921|ref|YP_005696899.1| ribonuclease III [Corynebacterium pseudotuberculosis 1/06-A]
gi|389850686|ref|YP_006352921.1| Ribonuclease III [Corynebacterium pseudotuberculosis 258]
gi|392400864|ref|YP_006437464.1| ribonuclease III [Corynebacterium pseudotuberculosis Cp162]
gi|300686211|gb|ADK29133.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
gi|302206463|gb|ADL10805.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231]
gi|302331018|gb|ADL21212.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002]
gi|308276705|gb|ADO26604.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19]
gi|341825146|gb|AEK92667.1| Ribonuclease III [Corynebacterium pseudotuberculosis PAT10]
gi|348607301|gb|AEP70574.1| Ribonuclease III [Corynebacterium pseudotuberculosis 42/02-A]
gi|349735410|gb|AEQ06888.1| Ribonuclease III [Corynebacterium pseudotuberculosis CIP 52.97]
gi|355392712|gb|AER69377.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1/06-A]
gi|371576227|gb|AEX39830.1| Ribonuclease III [Corynebacterium pseudotuberculosis 3/99-5]
gi|377654341|gb|AFB72690.1| Ribonuclease III [Corynebacterium pseudotuberculosis 316]
gi|380870017|gb|AFF22491.1| Ribonuclease III [Corynebacterium pseudotuberculosis P54B96]
gi|383805210|gb|AFH52289.1| Ribonuclease III [Corynebacterium pseudotuberculosis 267]
gi|384477363|gb|AFH91159.1| Ribonuclease III [Corynebacterium pseudotuberculosis 31]
gi|388247992|gb|AFK16983.1| Ribonuclease III [Corynebacterium pseudotuberculosis 258]
gi|390531942|gb|AFM07671.1| Ribonuclease III [Corynebacterium pseudotuberculosis Cp162]
Length = 249
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNML 230
LQE RK P PVY T +TG H ++FT V EG G +KK+A++ AA +
Sbjct: 181 LQERAAERKLPIPVY-TASSTGPEHSQIFTAVVTVGTTVLGEGTGPNKKLAEQAAAHKAV 239
Query: 231 KFLETVP 237
FL+ P
Sbjct: 240 TFLQENP 246
>gi|198470865|ref|XP_001355419.2| GA11711 [Drosophila pseudoobscura pseudoobscura]
gi|198145657|gb|EAL32477.2| GA11711 [Drosophila pseudoobscura pseudoobscura]
Length = 633
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+Y+ E TG H +FT+ V+ K G G+SKK+A+ EAA L+
Sbjct: 71 IYKLESQTGPVHAPLFTISVEVDGQKYMGQGRSKKVARIEAAATALR 117
>gi|156364733|ref|XP_001626500.1| predicted protein [Nematostella vectensis]
gi|156213378|gb|EDO34400.1| predicted protein [Nematostella vectensis]
Length = 237
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 21/112 (18%)
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-----IGRDDEKLMCQKENLFKVE 165
+ +T + L G +KKEAK NAA+ +++L +G M Q + ++
Sbjct: 88 FTCDVTVDGVLSSCRAYGPTKKEAKGNAARKAIEELTFDPSLGNSSTYKMSQVSSESRIS 147
Query: 166 P---------------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV 202
P N +G LQE +WP P Y +E+ G H + F V
Sbjct: 148 PLHPKTTPPKGPETVENYIGTLQEYTAAHRWPTPKY-SEDMRGQDHCKEFIV 198
>gi|119630227|gb|EAX09822.1| SON DNA binding protein, isoform CRA_h [Homo sapiens]
Length = 2459
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2333 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2370
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2371 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2429
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2430 TAATVVLQAMGLVP 2443
>gi|426392883|ref|XP_004062768.1| PREDICTED: protein SON isoform 1 [Gorilla gorilla gorilla]
Length = 2368
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2242 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2279
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2280 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2338
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2339 TAATVVLQAMGLVP 2352
>gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
Length = 1730
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV----YKEEGMGK---SKKIAKRE 224
L + C+ R+WP P Y +G H + FT VN + +E G+ S K AK
Sbjct: 1648 LNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDS 1707
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKG 253
AAL +L+ L KQ +D+ K
Sbjct: 1708 AALVLLEVL----------KQWDDIGTKA 1726
>gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3]
gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3]
Length = 231
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE P YE + TG H++ F + EG GK+KK A+++AA L
Sbjct: 164 LQELTQATDGKAPTYEIIDETGPDHDKTFHCRVSAGDIQAEGSGKNKKTAQQDAAHKALA 223
Query: 232 FLETVPI 238
++ P+
Sbjct: 224 LIKGEPL 230
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 75 DRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+R SL+QEL + G AP YE+I G ++ F R+S A GSGK+KK
Sbjct: 157 NRNYKSLLQELTQATDGKAPTYEIIDETGPDHDKTFHCRVSAGD----IQAEGSGKNKKT 212
Query: 134 AKHNAAKSVL 143
A+ +AA L
Sbjct: 213 AQQDAAHKAL 222
>gi|384427186|ref|YP_005636544.1| ribonuclease III [Xanthomonas campestris pv. raphani 756C]
gi|341936287|gb|AEL06426.1| ribonuclease III [Xanthomonas campestris pv. raphani 756C]
Length = 227
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + + EG G S+++
Sbjct: 151 KAEKDPKTRLQEWLQARQLPLPQYALISESGDEHAKQFHVACILEQPAARAEGQGTSRRL 210
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 211 AEQQAAATVIAQLDS 225
>gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001]
gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001]
Length = 256
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE M R PVYE E +G H +F + V ++ G G SK++A++EAA +L
Sbjct: 181 LQEWAMARSLAIPVYEVVERSGPDHAPVFRIAVRVESIEPGYGEGASKRVAEQEAARAVL 240
>gi|433446059|ref|ZP_20410190.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
gi|432000804|gb|ELK21696.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
Length = 231
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QE + R G+ +Y+++Q G + F R+SL E + +G G+SKKEA+ A
Sbjct: 161 SQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEE---LGVGVGRSKKEAEQRA 217
Query: 139 AKSVLDQL 146
A+ L +L
Sbjct: 218 AQMALAKL 225
>gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis]
gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis]
Length = 1543
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV----YKEEGMGK---SKKIAKRE 224
L + C+ R WP P Y G H + FT VN + +E +G+ S K AK
Sbjct: 1470 LNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDS 1529
Query: 225 AALNMLKFL 233
AA+ +L+ L
Sbjct: 1530 AAVLLLELL 1538
>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
gi|226735364|sp|B7GGE9.1|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
Length = 238
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QE + R G+ +Y+++Q G + F R+SL E + +G G+SKKEA+ A
Sbjct: 168 SQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEE---LGVGVGRSKKEAEQRA 224
Query: 139 AKSVLDQL 146
A+ L +L
Sbjct: 225 AQMALAKL 232
>gi|429769972|ref|ZP_19302056.1| ribonuclease III [Brevundimonas diminuta 470-4]
gi|429185885|gb|EKY26855.1| ribonuclease III [Brevundimonas diminuta 470-4]
Length = 238
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREA 225
NP LQE + P P Y E TG H FTV V Y+ G+S++ A++ A
Sbjct: 168 NPKSALQEWAQGQGRPLPTYAVVERTGSDHAPTFTVETTVAGYEPARAQGRSRQEAEKAA 227
Query: 226 ALNMLK 231
A+ +LK
Sbjct: 228 AIALLK 233
>gi|410694560|ref|YP_003625182.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As]
gi|294340985|emb|CAZ89380.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As]
Length = 276
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMGKSKKIAKREAALN 228
QLQE ++ P P Y + G H++ F V CA + K EG G S++ A+++AA
Sbjct: 155 QLQEFLQGQRLPLPSYAVLDVRGAAHQQQFKVECAVEALGLKVEGEGDSRRRAEQDAATR 214
Query: 229 MLKFL---ETVPIEIPEKKQGED---VDEKGESNGLKHTHDST 265
M++ + T P+ ++G VDE+G++ H D+
Sbjct: 215 MIERIGRGGTKPV-----RRGNRPVLVDERGQAVQPSHAPDAA 252
>gi|195045715|ref|XP_001992024.1| GH24441 [Drosophila grimshawi]
gi|193892865|gb|EDV91731.1| GH24441 [Drosophila grimshawi]
Length = 633
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+Y+ E TG H +FT+ V+ K G G+SKK+A+ EAA L+
Sbjct: 71 IYKLESQTGPVHAPLFTISVEVDGQKYMGQGRSKKVARIEAAATALR 117
>gi|395512568|ref|XP_003760508.1| PREDICTED: interleukin enhancer-binding factor 3 [Sarcophilus
harrisii]
Length = 902
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 84/221 (38%), Gaps = 57/221 (25%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI------ 147
+Y+L+ G ++ PIF + + S + A SG SKK AK + A VL +
Sbjct: 416 QYKLVSQTGPVHAPIFTMSVEVDGSS--FEA--SGPSKKTAKLHVAVKVLQDMGLPTGAE 471
Query: 148 ------GRDDEKLMCQK---------------------------ENLFKVEP-------N 167
G D + QK EN+ + P N
Sbjct: 472 GKESNKGEDSAEETEQKPVVVAPPPVVETVATPSAAFPSPDQTSENVKQQGPILTKHGKN 531
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PV +L E K YE TG H++ F + V+ K +G G +KK+AK AAL
Sbjct: 532 PVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAFAAL 586
Query: 228 NML-KFLETVPIEI-PEKKQGEDVDEKGESNGLKHTHDSTF 266
L K P+ + P KK+ V +G H+ F
Sbjct: 587 TALEKLFPDAPVALEPNKKKRAPVPVRGGPKFAAKQHNPGF 627
>gi|297842797|ref|XP_002889280.1| hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp.
lyrata]
gi|297335121|gb|EFH65539.1| hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp.
lyrata]
Length = 190
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEG 213
L E C +++W PPVYE + G H R+FT V + + G
Sbjct: 101 LHEICASKRWRPPVYECCKVDGPCHLRLFTYKVVVEIIESSG 142
>gi|431894718|gb|ELK04511.1| Protein SON [Pteropus alecto]
Length = 2343
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2217 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2254
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2255 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2313
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2314 TAATVVLQAMGLVP 2327
>gi|195133919|ref|XP_002011386.1| GI16028 [Drosophila mojavensis]
gi|193907361|gb|EDW06228.1| GI16028 [Drosophila mojavensis]
Length = 633
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+Y+ E TG H +FT+ V+ K G G+SKK+A+ EAA L+
Sbjct: 71 IYKLESQTGPVHAPLFTISVEVDGQKYMGQGRSKKVARIEAAATALR 117
>gi|195403581|ref|XP_002060356.1| GJ18414 [Drosophila virilis]
gi|194147402|gb|EDW63114.1| GJ18414 [Drosophila virilis]
Length = 633
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+Y+ E TG H +FT+ V+ K G G+SKK+A+ EAA L+
Sbjct: 71 IYKLESQTGPVHAPLFTISVEVDGQKYMGQGRSKKVARIEAAATALR 117
>gi|188577282|ref|YP_001914211.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521734|gb|ACD59679.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 226
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + V + EG G S+++
Sbjct: 150 KAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFHVACILEQPVARAEGQGTSRRL 209
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 210 AEQQAATLVIAQLDS 224
>gi|325275444|ref|ZP_08141375.1| ribonuclease III [Pseudomonas sp. TJI-51]
gi|324099420|gb|EGB97335.1| ribonuclease III [Pseudomonas sp. TJI-51]
Length = 229
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIGR---------DDEKLMCQKENLFK----VEP 166
Y+ +GSG KS + + L+ LIG E+++ N F+ V+
Sbjct: 92 YLRLGSGELKSGGFRRESILADALEALIGAIYLDADMETARERVLAWLANEFEGLTLVDT 151
Query: 167 N--PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMGKSKKIAK 222
N P +LQE +R P YE + G PH R F V C V + K G G S++IA+
Sbjct: 152 NKDPKTRLQEFLQSRSCELPRYEVVDIQGEPHCRTFFVECEVVLLNNKSRGQGVSRRIAE 211
Query: 223 REAALNML 230
+ AA + L
Sbjct: 212 QVAAASAL 219
>gi|21230730|ref|NP_636647.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769274|ref|YP_244036.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004]
gi|188992425|ref|YP_001904435.1| ribonuclease III [Xanthomonas campestris pv. campestris str. B100]
gi|24212269|sp|Q8PB52.1|RNC_XANCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|81304767|sp|Q4USF7.1|RNC_XANC8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|21112323|gb|AAM40571.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574606|gb|AAY50016.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004]
gi|167734185|emb|CAP52393.1| Ribonuclease III [Xanthomonas campestris pv. campestris]
Length = 226
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + + EG G S+++
Sbjct: 150 KAEKDPKTRLQEWLQARQLPLPQYALISESGDEHAKQFHVACILEQPAARAEGQGTSRRL 209
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 210 AEQQAAATVIAQLDS 224
>gi|427428070|ref|ZP_18918112.1| Ribonuclease III [Caenispirillum salinarum AK4]
gi|425882771|gb|EKV31450.1| Ribonuclease III [Caenispirillum salinarum AK4]
Length = 229
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIAKREAALNML 230
LQE + P P YET ETTG H+ F V V + G G SK+ A++ AA +L
Sbjct: 164 LQEWAQGQGKPLPAYETVETTGPAHDPRFVVAVTVQGIAPATGTGTSKRKAEQMAAETLL 223
>gi|52842090|ref|YP_095889.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777725|ref|YP_005186163.1| ribonuclease III [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|81377263|sp|Q5ZUD5.1|RNC_LEGPH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52629201|gb|AAU27942.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364508540|gb|AEW52064.1| ribonuclease III [Legionella pneumophila subsp. pneumophila ATCC
43290]
Length = 224
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 63 AARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRL 121
++RL+ LN + + +QE L + + P+Y L +IEG + IF ++ T E
Sbjct: 140 SSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKIEGDEHAQIF--HVTCTIEGVS 197
Query: 122 YVAIGSGKSKKEAKHNAAKSVLDQLIG 148
VA G+G ++++A+ AAK++L+QL G
Sbjct: 198 QVAYGTGPNRRKAEQLAAKAMLEQLQG 224
>gi|170574540|ref|XP_001892859.1| Double-stranded RNA binding motif family protein [Brugia malayi]
gi|158601386|gb|EDP38310.1| Double-stranded RNA binding motif family protein [Brugia malayi]
Length = 369
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPP 184
+G G++KK AK AAK +L ++I EK L K + + L C K
Sbjct: 80 MGYGRTKKIAKQMAAKDMLKKMI----EKESFSDFGLGKTKEEALANL---CQKLKLLNA 132
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
YE +E G ++R+F V GK+KKIAK AA M LE
Sbjct: 133 TYEIDE-EGPTNQRIFIATCTVGKIHVVAHGKTKKIAKTLAAQKMCTQLE 181
>gi|399519923|ref|ZP_10760714.1| ribonuclease III [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112320|emb|CCH37273.1| ribonuclease III [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 229
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 133 EAKHNAAK-SVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEET 191
+A +AA+ VLD L G D L +P +LQE +R P YE +
Sbjct: 125 DAGMDAARERVLDWLTGELD------GLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDV 178
Query: 192 TGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
G PH R F V V++ E G G S++IA+
Sbjct: 179 QGEPHCRTFMVECQVSLLNETTLGQGGSRRIAE 211
>gi|392411929|ref|YP_006448536.1| ribonuclease III [Desulfomonile tiedjei DSM 6799]
gi|390625065|gb|AFM26272.1| ribonuclease III [Desulfomonile tiedjei DSM 6799]
Length = 247
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 90 GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146
G P YE+I G ++ F + L + +G+G++K+EA NAA+ LD+L
Sbjct: 179 GVTPTYEVIDQWGEEHQKTFSVAVFLGNH---MAGLGTGRNKREAAQNAAREALDRL 232
>gi|423682137|ref|ZP_17656976.1| ribonuclease III [Bacillus licheniformis WX-02]
gi|383438911|gb|EID46686.1| ribonuclease III [Bacillus licheniformis WX-02]
Length = 253
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QE + R G +Y+++Q +G + F+ +SL E + +GSG+SKKEA+ +A
Sbjct: 182 SQLQEFVQRDGRGILEYKILQEKGPAHNREFEANVSLKGEV---LGVGSGRSKKEAEQHA 238
Query: 139 AKSVLDQL 146
A+ L +L
Sbjct: 239 AQEALAKL 246
>gi|24654775|ref|NP_725748.1| staufen, isoform B [Drosophila melanogaster]
gi|7302673|gb|AAF57753.1| staufen, isoform B [Drosophila melanogaster]
gi|27819870|gb|AAO24983.1| LP08764p [Drosophila melanogaster]
Length = 914
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 125 IGSGKSKKEAKHNAAKSVLD----QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRK 180
+G G++ ++AKH+AA L Q I +E L + K +P+ Q+ E + R
Sbjct: 422 VGIGRTLQQAKHDAAARALQVLKTQAISASEEALEDSMDEGDKK--SPISQVHEIGIKRN 479
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEI 240
++ G H + F V EG G KK++K+ AA ML L+ +P
Sbjct: 480 MTV-HFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQKLPPLT 538
Query: 241 PEKK 244
P K+
Sbjct: 539 PTKQ 542
>gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
gi|404489084|ref|YP_006713190.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|81385589|sp|Q65JQ5.1|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52348075|gb|AAU40709.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
Length = 249
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 80 SLMQELLSRRGTAP-KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
S +QE + R G +Y+++Q +G + F+ +SL E + +GSG+SKKEA+ +A
Sbjct: 178 SQLQEFVQRDGRGILEYKILQEKGPAHNREFEANVSLKGEV---LGVGSGRSKKEAEQHA 234
Query: 139 AKSVLDQL 146
A+ L +L
Sbjct: 235 AQEALAKL 242
>gi|195584465|ref|XP_002082027.1| GD25416 [Drosophila simulans]
gi|194194036|gb|EDX07612.1| GD25416 [Drosophila simulans]
Length = 1035
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 125 IGSGKSKKEAKHNAAKSVLD----QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRK 180
+G G++ ++AKH+AA L Q I +E L + K +P+ Q+ E + R
Sbjct: 536 VGIGRTLQQAKHDAAARALQVLKTQAISASEEALEDSMDEGDKK--SPISQVHEIGIKRN 593
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEI 240
++ G H + F V EG G KK++K+ AA ML L+ +P
Sbjct: 594 MTV-HFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQKLPPLT 652
Query: 241 PEKK 244
P K+
Sbjct: 653 PTKQ 656
>gi|322514172|ref|ZP_08067237.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
gi|322119958|gb|EFX91960.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
Length = 222
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 69 MRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
M+ + + P + +QE L R+ P YE+I I+G + FK + + + IG
Sbjct: 144 MKPSDAQKDPKTRLQEFLQGRKLKLPAYEVIDIKGEAHNQTFKVTCKIETFDETF--IGV 201
Query: 128 GKSKKEAKHNAAKSVLDQL 146
G S+++A+ NAA+ VL +L
Sbjct: 202 GTSRRKAEQNAAEQVLVKL 220
>gi|297287594|ref|XP_001093086.2| PREDICTED: protein SON-like [Macaca mulatta]
Length = 2140
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 106 EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVE 165
EPI + ++ + VA+G K+ +AA + L G+
Sbjct: 2014 EPIL---VDFKTDRKGLVAVGERAQKRSGNFSAA---MKDLSGK---------------- 2051
Query: 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKIAKR 223
+PV L E C R+W PP + +G H + F +N Y+ +KK AK
Sbjct: 2052 -HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110
Query: 224 EAALNMLKFLETVP 237
AA +L+ + VP
Sbjct: 2111 TAATVVLQAMGLVP 2124
>gi|89900532|ref|YP_523003.1| ribonuclease III [Rhodoferax ferrireducens T118]
gi|122479398|sp|Q21XN1.1|RNC_RHOFD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|89345269|gb|ABD69472.1| RNAse III [Rhodoferax ferrireducens T118]
Length = 228
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 158 KENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNV-YKEEGMG 215
K ++ + +P +LQE RK P+Y T G H++ F V C V + + E G+G
Sbjct: 145 KSDMEAIGKDPKTELQEWLQGRKMNLPLYRVVATLGAAHKQTFDVECEIVELNFLERGIG 204
Query: 216 KSKKIAKREAALNMLKFLET 235
S++ ++ AA ML+ L+
Sbjct: 205 GSRRAGEQAAAAAMLQTLKA 224
>gi|7546826|gb|AAF63702.1| alternative double-stranded RNA-specific adenosine deaminase b
[Drosophila melanogaster]
Length = 669
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+Y+ E TG H +FT+ V+ K G G+SKK+A+ EAA L+
Sbjct: 70 IYKLESQTGPVHAPLFTISVEVDGQKYLGQGRSKKVARIEAAATALR 116
>gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 243
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 69 MRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
M+ + P + +QE L R+ P YE++ I+G + FK + +++ IG+
Sbjct: 164 MKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGT 223
Query: 128 GKSKKEAKHNAAKSVLDQLI 147
S+++A+ NAA+ VL +L+
Sbjct: 224 --SRRKAEQNAAEQVLAKLM 241
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKKIA 221
+ +P +LQE RK P P YE + G H + F V + + +E G+G S++ A
Sbjct: 169 AQKDPKTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKA 228
Query: 222 KREAALNMLKFLET 235
++ AA +L L T
Sbjct: 229 EQNAAEQVLAKLMT 242
>gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
Length = 1728
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV----YKEEGMGK---SKKIAKRE 224
L + C+ R+WP P Y +G H + FT VN + +E G+ S K AK
Sbjct: 1648 LNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDS 1707
Query: 225 AALNMLKFLE 234
AAL +L+ L+
Sbjct: 1708 AALVLLEVLK 1717
>gi|4164311|emb|CAA22774.1| EG:BACN35H14.1 [Drosophila melanogaster]
Length = 653
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+Y+ E TG H +FT+ V+ K G G+SKK+A+ EAA L+
Sbjct: 70 IYKLESQTGPVHAPLFTISVEVDGQKYLGQGRSKKVARIEAAATALR 116
>gi|440510110|ref|YP_007347546.1| ribonuclease 3 [Candidatus Blochmannia chromaiodes str. 640]
gi|440454323|gb|AGC03815.1| ribonuclease 3 [Candidatus Blochmannia chromaiodes str. 640]
Length = 226
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAKREAALN 228
+LQE R+ P PVY + G H ++FT+ V+ + G G S++ A++ AA
Sbjct: 158 RLQEYMQHRRLPLPVYWINQIIGEAHNQIFTINCQVSKLTQPIIGCGSSRRRAEQNAAKK 217
Query: 229 MLKFLE 234
+L+ LE
Sbjct: 218 VLEVLE 223
>gi|24639162|ref|NP_569940.2| adenosine deaminase acting on RNA, isoform A [Drosophila
melanogaster]
gi|386763618|ref|NP_001245469.1| adenosine deaminase acting on RNA, isoform I [Drosophila
melanogaster]
gi|13448047|gb|AAK26850.1| pre-mRNA adenosine deaminase [Drosophila melanogaster]
gi|22831515|gb|AAF45665.2| adenosine deaminase acting on RNA, isoform A [Drosophila
melanogaster]
gi|383293141|gb|AFH07183.1| adenosine deaminase acting on RNA, isoform I [Drosophila
melanogaster]
Length = 632
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+Y+ E TG H +FT+ V+ K G G+SKK+A+ EAA L+
Sbjct: 70 IYKLESQTGPVHAPLFTISVEVDGQKYLGQGRSKKVARIEAAATALR 116
>gi|392378865|ref|YP_004986025.1| RNase III [Azospirillum brasilense Sp245]
gi|356880347|emb|CCD01296.1| RNase III [Azospirillum brasilense Sp245]
Length = 249
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 124 AIGSGKSKKEAKHNAAKSVLDQLI---GRDDEKLMCQKE---NLFKVEPNPVGQ---LQE 174
A G G+S +A ++V+ L G D + + + + EP P+ LQE
Sbjct: 124 AQGGGRSNNTILADACEAVIGALYLDGGMDKARDFIRGAWAGQIDRAEPPPLDSKTALQE 183
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE-EGMGKSKKIAKREAALNMLKFL 233
K P P YE E +G HE +F + + + G SK++A+R+AA +L+ L
Sbjct: 184 WAQGNKRPLPTYELIEQSGPAHEPVFRIAVRLKGMEPVTATGPSKRVAERKAASALLRQL 243
>gi|325920677|ref|ZP_08182587.1| RNAse III [Xanthomonas gardneri ATCC 19865]
gi|325548867|gb|EGD19811.1| RNAse III [Xanthomonas gardneri ATCC 19865]
Length = 227
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--VYKEEGMGKSKKI 220
K E +P +LQE R+ P P Y +G H + F V + V + EG G S+++
Sbjct: 151 KAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFHVACILEQPVARAEGQGTSRRL 210
Query: 221 AKREAALNMLKFLET 235
A+++AA ++ L++
Sbjct: 211 AEQQAATLVIAQLDS 225
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,631,164,665
Number of Sequences: 23463169
Number of extensions: 239452849
Number of successful extensions: 495198
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 1148
Number of HSP's that attempted gapping in prelim test: 490249
Number of HSP's gapped (non-prelim): 4054
length of query: 377
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 233
effective length of database: 8,980,499,031
effective search space: 2092456274223
effective search space used: 2092456274223
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)