BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5350
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed With
Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
Interactions
pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed With
Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
Interactions
Length = 69
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PVG LQE + + W P Y + +G PH+R FT+ V + E G G SK++AKR AA
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAE 61
Query: 228 NMLKFLET 235
+L +T
Sbjct: 62 KLLTKFKT 69
>pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For Mirna
Processing
Length = 88
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALN 228
VG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR AA
Sbjct: 18 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAK 77
Query: 229 MLKFLETVPIE 239
ML + TVP++
Sbjct: 78 MLLRVHTVPLD 88
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 79 VSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
V +QEL+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK N
Sbjct: 18 VGALQELVVQKGWRLPEYTVTQESG----PAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 73
Query: 138 AAKSVL 143
AA +L
Sbjct: 74 AAAKML 79
>pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar Rna-Binding
Protein 2
Length = 89
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 74
Query: 225 AALNML 230
AA ML
Sbjct: 75 AAAKML 80
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 78 PVSLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
PV +QEL+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK
Sbjct: 18 PVGALQELVVQKGWRLPEYTVTQESG----PAHRKEFTMTCRVERFIEIGSGTSKKLAKR 73
Query: 137 NAAKSVLDQLIG 148
NAA +L ++ G
Sbjct: 74 NAAAKMLLRVSG 85
>pdb|3LLH|A Chain A, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding
Protein 2
pdb|3LLH|B Chain B, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding
Protein 2
Length = 90
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G G SKK AK
Sbjct: 14 KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQGPSKKAAK 69
Query: 136 HNAAKSVLDQLIG 148
H AA+ L L G
Sbjct: 70 HKAAEVALKHLKG 82
>pdb|2LJH|A Chain A, Nmr Structure Of Double-Stranded Rna-Specific Editase Adar
Length = 114
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 185 VYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+Y+ E TG H +FT+ V+ K G G+SKK+A+ EAA L+
Sbjct: 51 IYKLESQTGPVHAPLFTISVEVDGQKYLGQGRSKKVARIEAAATALR 97
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
V+++ EL R G Y+L G ++ P+F IS+ + + Y +G G+SKK A+ A
Sbjct: 40 VAMLNEL--RHGLI--YKLESQTGPVHAPLFT--ISVEVDGQKY--LGQGRSKKVARIEA 91
Query: 139 AKSVLDQLIGRDDEKLM 155
A + L I D ++
Sbjct: 92 AATALRSFIQFKDGAVL 108
>pdb|2DIX|A Chain A, Solution Structure Of The Dsrm Domain Of Protein Activator
Of The Interferon-Induced Protein Kinase
Length = 84
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 8 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 63
Query: 136 HNAAKSVLDQL 146
H AA++ ++ L
Sbjct: 64 HRAAEAAINIL 74
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR---E 224
P+ L E M K PVYE E + H FT V G G SKK+AK E
Sbjct: 10 PIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAE 68
Query: 225 AALNMLK 231
AA+N+LK
Sbjct: 69 AAINILK 75
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
Length = 221
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 80 SLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QE+ +R P+Y LI +EG P K + + ++ + Y +G GKSKKEA+ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEG----PHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRA 209
Query: 139 AKSVLDQL 146
A+ ++ L
Sbjct: 210 AEELIKLL 217
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE R P Y G H++ F V A + Y+ G GKSKK A++ AA ++K
Sbjct: 156 LQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIK 215
Query: 232 FLE 234
LE
Sbjct: 216 LLE 218
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
Length = 221
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 80 SLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QE+ +R P+Y LI +EG P K + + ++ + Y +G GKSKKEA+ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEG----PHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRA 209
Query: 139 AKSVLDQL 146
A+ ++ L
Sbjct: 210 AEELIKLL 217
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE R P Y G H++ F V A + Y+ G GKSKK A++ AA ++K
Sbjct: 156 LQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIK 215
Query: 232 FLE 234
LE
Sbjct: 216 LLE 218
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
Length = 221
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 80 SLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QE+ +R P+Y LI +EG P K + + ++ + Y +G GKSKKEA+ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEG----PHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRA 209
Query: 139 AKSVLDQL 146
A+ ++ L
Sbjct: 210 AEELIKLL 217
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE R P Y G H++ F V A + Y+ G GKSKK A++ AA ++K
Sbjct: 156 LQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIK 215
Query: 232 FLE 234
LE
Sbjct: 216 LLE 218
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 80 SLMQELLSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QE+ +R P+Y LI +EG P K + + ++ + Y +G GKSKKEA+ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEG----PHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRA 209
Query: 139 AKSVLDQL 146
A+ ++ L
Sbjct: 210 AEELIKLL 217
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE R P Y G H++ F V A + Y+ G GKSKK A++ AA ++K
Sbjct: 156 LQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIK 215
Query: 232 FLE 234
LE
Sbjct: 216 LLE 218
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
Resolution
Length = 220
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 80 SLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QE+ +R P+Y LI +EG P K + + ++ + Y +G GKSKKEA+ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEG----PHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRA 209
Query: 139 AKSVLDQL 146
A+ ++ L
Sbjct: 210 AEELIKLL 217
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
LQE R P Y G H++ F V A + Y+ G GKSKK A++ AA ++K
Sbjct: 156 LQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIK 215
Query: 232 FLE 234
LE
Sbjct: 216 LLE 218
>pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif
Length = 85
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 167 NPVGQLQEACMT----RKWPP-PVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKK 219
+P QLQ+ C+T K P P+Y+T +T G H R +TV Y +K E G GK
Sbjct: 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVY---FKGERIGCGKGPS 58
Query: 220 IAKREAALNM 229
I + E M
Sbjct: 59 IQQAEMGAAM 68
>pdb|1WHN|A Chain A, Solution Structure Of The Dsrbd From Hypothetical Protein
Bab26260
Length = 128
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 172 LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV----YKEEGMGKSKKIAKREAAL 227
L E C K P PVYET + T +RMF C+ V V Y+ KSKK+A++ AA+
Sbjct: 32 LLEWCRREKLPQPVYETVQRT---IDRMF--CSVVTVAEQKYQSTLWDKSKKLAEQTAAI 86
Query: 228 NML--------KFLETVPIEIPEKKQGEDVDEKGESNG 257
L + E P K++ D D G +G
Sbjct: 87 VCLRSQGLPEGRLGEESPSLNKRKREAPDQDPGGPRSG 124
>pdb|176L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|176L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G + K + NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHTLKVDGNSNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1UHZ|A Chain A, Solution Structure Of Dsrna Binding Domain In Staufen
Homolog 2
Length = 89
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
P+ +L + RK P Y G+P R F + V G G +KKIAK+ AA
Sbjct: 8 PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAE 67
Query: 228 NML 230
ML
Sbjct: 68 AML 70
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 78 PVS-LMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P+S L Q +R+ P Y L+ G F ++ + +E VA G+G +KK AK
Sbjct: 8 PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE----VATGTGPNKKIAKK 63
Query: 137 NAAKSVLDQL 146
NAA+++L QL
Sbjct: 64 NAAEAMLLQL 73
>pdb|4EXM|A Chain A, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
pdb|4EXM|B Chain B, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
pdb|4EXM|C Chain C, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
pdb|4EXM|D Chain D, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
Length = 347
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHN 137
+S ++E L R +E+++I+ + I+K ++ Y IG G K N
Sbjct: 171 ISQLKEFLRRSVNIVIFEMLRIDERLRLKIYK-------DTEGYYTIGIGHLLTKSPSLN 223
Query: 138 AAKSVLDQLIGRDDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
AAKS LD+ IGR+ ++ + E LF V+ G L+ A + PVY++
Sbjct: 224 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 273
>pdb|2QB0|B Chain B, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker.
pdb|2QB0|D Chain D, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker
Length = 241
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 37/161 (22%)
Query: 45 NEIKQIPKVSTNNLPLEEAARLEVMRLNTGDRTPVS------LMQELLSRRGTAPK-YEL 97
NE P + +N + A L + + + R+P S L+Q +L + G P +E+
Sbjct: 29 NEFSLRP-IDSNTFEMNGKALLLLTKEDFRYRSPHSGDVLYELLQHILKQAG--PNIFEM 85
Query: 98 IQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDD----- 151
++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 86 LRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVIT 138
Query: 152 ----EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
EKL CQ V+ G L+ A + PVY++
Sbjct: 139 KDEAEKLFCQ-----DVDAAVRGILRNAKL-----KPVYDS 169
>pdb|2LRS|A Chain A, The Second Dsrbd Domain From A. Thaliana Dicer-like 1
Length = 71
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV----YKEEGMGK---SKKIAKREAA 226
+ C+ + WP P Y + G H + FT VN + +E +G+ S K AK AA
Sbjct: 2 DICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAA 61
Query: 227 LNMLKFL 233
+ +L+ L
Sbjct: 62 VLLLELL 68
>pdb|1D3F|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
+M + E LF V+ G L+ A + PVY++
Sbjct: 57 VMTKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|4EPI|A Chain A, The Crystal Structure Of Pesticin-T4 Lysozyme Hybrid
Stabilized By Engineered Disulfide Bonds
Length = 330
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHN 137
+S ++E L R +E+++ + + I+K ++ Y IG G K N
Sbjct: 154 ISQLKEFLRRSVNIVCFEMLRCDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLN 206
Query: 138 AAKSVLDQLIGRDDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
AAKS LD+ IGR+ ++ + E LF V+ G L+ A + PVY++
Sbjct: 207 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 256
>pdb|1T8G|A Chain A, Crystal Structure Of Phage T4 Lysozyme Mutant
L32aL33AT34AC54TC97AE108V
Length = 164
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK-KEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G + K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHAATKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|241L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG+G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGAGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1D3M|A Chain A, Methionine Core Mutation
Length = 164
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A M PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPVYDS 90
>pdb|129L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 17/102 (16%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEET 191
++ + E LF V+ G L+ A + PVY++ +T
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDT 93
>pdb|1CU2|A Chain A, T4 Lysozyme Mutant L84m
Length = 164
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A M PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPVYDS 90
>pdb|210L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 163
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFKVEPNPV-GQLQEACMTRKWPPPVYET 188
++ + E LF + + V G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAVRGILRNAKL-----KPVYDS 89
>pdb|1KW5|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A M PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPVYDS 90
>pdb|1KY0|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A M PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPVYDS 90
>pdb|171L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSALDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CX7|A Chain A, T4 Lysozyme Methionine Core Mutant
Length = 164
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A M PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPVYDS 90
>pdb|1KW7|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A M PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPVYDS 90
>pdb|1L0J|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A M PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPVYDS 90
>pdb|1L0K|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A M PVY++ + + M + +
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPVYDSMD--AVRRAAMINMVFQMGET 109
Query: 210 KEEGMGKSKKIAKR----EAALNMLK 231
G S ++ ++ EAA+NM K
Sbjct: 110 GMAGFTNSMRMMQQKRWDEAAVNMAK 135
>pdb|1KY1|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A M PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPVYDS 90
>pdb|3CDO|A Chain A, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
pdb|3CDO|B Chain B, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
pdb|3CDO|C Chain C, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
pdb|3CDO|D Chain D, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
Length = 164
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + VCA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RVCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1QT5|A Chain A, D20e Mutant Structure Of T4 Lysozyme
Length = 164
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K E+ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------ETEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QT7|A Chain A, E11n Mutant Of T4 Lysozyme
Length = 164
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDNGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CU0|A Chain A, T4 Lysozyme Mutant I78m
Length = 164
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGMLRNAKL-----KPVYDS 90
>pdb|3CDV|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ L RM CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS-----LDAVRM---CALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|230L|A Chain A, T4 Lysozyme Mutant M6l
Length = 164
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+EL++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FELLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CTW|A Chain A, T4 Lysozyme Mutant I78a
Length = 164
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGALRNAKL-----KPVYDS 90
>pdb|3HWL|A Chain A, Crystal Structure Of T4 Lysozyme With The Unnatural Amino
Acid P- Acetyl-L-Phenylalanine Incorporated At Position
131
Length = 164
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 27/104 (25%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDD-- 151
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 152 -------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
EKL CQ V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFCQ-----DVDAAVRGILRNAKL-----KPVYDS 90
>pdb|139L|A Chain A, Rapid Crystallization Of T4 Lysozyme By Intermolecular
Disulfide Crosslinking
Length = 164
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 27/104 (25%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDD-- 151
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 152 -------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
EKL CQ V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFCQ-----DVDAAVRGILRNAKL-----KPVYDS 90
>pdb|250L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG+G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGAGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
+ + E LF V+ G L+ A + PVY++
Sbjct: 57 VATKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|127L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAATRGILRNAKL-----KPVYDS 90
>pdb|1QT6|A Chain A, E11h Mutant Of T4 Lysozyme
Length = 164
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDHGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|131L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y +IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYSIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L41|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAHL-----KPVYDS 90
>pdb|261L|A Chain A, Structural Characterisation Of An Engineered Tandem Repeat
Contrasts The Importance Of Context And Sequence In
Protein Folding
pdb|262L|A Chain A, Structural Characterisation Of An Engineered Tandem Repeat
Contrasts The Importance Of Context And Sequence In
Protein Folding
pdb|262L|B Chain B, Structural Characterisation Of An Engineered Tandem Repeat
Contrasts The Importance Of Context And Sequence In
Protein Folding
Length = 173
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 95 YELIQIEGAINEPIFK-----YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149
+E+++I+ + I+K Y I + +I + KS+ + NAAKS LD+ IGR
Sbjct: 4 FEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSINAAKSELDKAINAAKSELDKAIGR 63
Query: 150 DDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
+ ++ + E LF V+ G L+ A + PVY++
Sbjct: 64 NTNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 101
>pdb|102L|A Chain A, How Amino-Acid Insertions Are Allowed In An Alpha-Helix Of
T4 Lysozyme
Length = 165
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL 154
+E+++I+ + I+K +E + IG +K + + AAKS LD+ IGR+ +
Sbjct: 4 FEMLRIDEGLRLKIYK-----DTEGYYTIGIGHLLTKSPSLNAAAKSELDKAIGRNTNGV 58
Query: 155 MC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
+ + E LF V+ G L+ A + PVY++
Sbjct: 59 ITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 91
>pdb|1CU6|A Chain A, T4 Lysozyme Mutant L91a
Length = 164
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEE 190
++ + E LF V+ G L+ A + PVY++ +
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSAD 92
>pdb|1P2R|A Chain A, T4 Lysozyme Core Repacking Mutant I78vTA
Length = 164
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGVLRNAKL-----KPVYDS 90
>pdb|3SB8|A Chain A, Cu-Mediated Dimer Of T4 Lysozyme D61hK65H BY SYNTHETIC
SYMMETRIZATION
pdb|3SB8|B Chain B, Cu-Mediated Dimer Of T4 Lysozyme D61hK65H BY SYNTHETIC
SYMMETRIZATION
pdb|3SB8|C Chain C, Cu-Mediated Dimer Of T4 Lysozyme D61hK65H BY SYNTHETIC
SYMMETRIZATION
Length = 165
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 7 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 59
Query: 154 LMCQK--ENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E+LF V+ G L+ A + PVY++
Sbjct: 60 VITKHEAEHLFNQDVDAAVRGILRNAKL-----KPVYDS 93
>pdb|3SB6|A Chain A, Cu-Mediated Dimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
pdb|3SB6|B Chain B, Cu-Mediated Dimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
pdb|3SB7|A Chain A, Cu-Mediated Trimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
pdb|3SB7|B Chain B, Cu-Mediated Trimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
Length = 165
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 7 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 59
Query: 154 LMCQK--ENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E+LF V+ G L A + PVY++
Sbjct: 60 VITKHEAEHLFNQDVDAAVHGILHNAKL-----KPVYDS 93
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 78 PVSLMQELLSRRGTAPK-----YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-K 131
PV +M L A K +E+++I+ + I+K ++ Y IG G
Sbjct: 198 PVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLT 250
Query: 132 KEAKHNAAKSVLDQLIGRDDEKLMCQKE 159
K NAAKS LD+ IGR+ ++ + E
Sbjct: 251 KSPSLNAAKSELDKAIGRNTNGVITKDE 278
>pdb|2QAR|C Chain C, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker.
pdb|2QAR|F Chain F, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker
Length = 163
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 27/104 (25%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDD-- 151
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 5 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 57
Query: 152 -------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYET 188
EKL CQ V+ G L+ A + PVY++
Sbjct: 58 VITKDEAEKLFCQ-----DVDAAVRGILRNAKL-----KPVYDS 91
>pdb|1LWG|A Chain A, Multiple Methionine Substitutions Are Tolerated In T4
Lysozyme And Have Coupled Effects On Folding And
Stability
Length = 164
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A M P+Y++ + + M + +
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKM-----KPMYDSMD--AVRRAAMINMVFQMGET 109
Query: 210 KEEGMGKSKKIAKR----EAALNMLK 231
G S ++ ++ EAA+NM K
Sbjct: 110 GMAGFTNSMRMMQQKRWDEAAVNMAK 135
>pdb|1LYJ|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VIAKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|126L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|119L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|125L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|118L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|224L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|162L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|163L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QT8|A Chain A, T26h Mutant Of T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL 154
+E+++I+ + I+K +E ++ IG +K + NAAKS LD+ IGR+ +
Sbjct: 4 FEMLRIDEGLRLKIYK-----DTEGYYHIGIGHLLTKSPS-LNAAKSELDKAIGRNTNGV 57
Query: 155 MC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
+ + E LF V+ G L+ A + PVY++
Sbjct: 58 ITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|233L|A Chain A, T4 Lysozyme Mutant M120l
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L77|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G1W|A Chain A, T4 Lysozyme Mutant C54tC97AQ105M
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|195L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|144L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CUP|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|234L|A Chain A, T4 Lysozyme Mutant M106l
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L81|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1P36|A Chain A, T4 Lyoszyme Core Repacking Mutant I100vTA
Length = 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QUG|A Chain A, E108v Mutant Of T4 Lysozyme
Length = 162
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1LYE|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VIVKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L61|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPNLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1P46|A Chain A, T4 Lysozyme Core Repacking Mutant M106iTA
Length = 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1PQO|A Chain A, T4 Lysozyme Core Repacking Mutant L118iTA
Length = 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L94|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|170L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNSNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L37|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 28/142 (19%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEGMGKSKKIAKREAALNMLK 231
+ MG++ +A E +L ML+
Sbjct: 104 FQ--MGET-GVAGFENSLRMLQ 122
>pdb|1L92|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1C6P|A Chain A, T4 Lysozyme Mutant C54tC97A IN THE PRESENCE OF 8 ATM ARGON
pdb|1C6Q|A Chain A, T4 Lysozyme Mutant C54tC97A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6T|A Chain A, T4 Lysozyme Mutant C54tC97A IN THE PRESENCE OF 8 ATM XENON
pdb|1LW9|A Chain A, Multiple Methionine Substitutions Are Tolerated In T4
Lysozyme And Have Coupled Effects On Folding And
Stability
pdb|2OE4|X Chain X, High Pressure Psuedo Wild Type T4 Lysozyme
pdb|2OE7|X Chain X, High-Pressure T4 Lysozyme
pdb|2OE9|X Chain X, High-Pressure Structure Of Pseudo-Wt T4 Lysozyme
pdb|2OEA|X Chain X, High-Pressure Structure Of Pseudo-Wt T4 Lysozyme
pdb|1L63|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
pdb|219L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G06|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149s
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L99|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEGMGKSKKIAKREAALNMLK 231
GMG++ +A +L ML+
Sbjct: 104 --FGMGET-GVAGFTNSLRMLQ 122
>pdb|198L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QS5|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L86|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L82|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QTC|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1JTM|A Chain A, Alternative Structures Of A Sequence Extended T4 Lysozyme
Show That The Highly Conserved Beta-Sheet Has Weak
Intrinsic Folding Propensity
pdb|1JTN|A Chain A, Alternative Structures Of A Sequence Extended T4 Lysozyme
Show That The Highly Conserved Beta-Sheet Region Has
Weak Intrinsic Folding Propensity
pdb|1JTN|B Chain B, Alternative Structures Of A Sequence Extended T4 Lysozyme
Show That The Highly Conserved Beta-Sheet Region Has
Weak Intrinsic Folding Propensity
Length = 178
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QTD|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L95|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1JQU|A Chain A, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
pdb|1JQU|B Chain B, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
pdb|1JQU|C Chain C, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
pdb|1JQU|D Chain D, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QTH|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
pdb|1QTH|B Chain B, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|196L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1LYF|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VISKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1P64|A Chain A, T4 Lysozyme Core Repacking Mutant L133fTA
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1P7S|A Chain A, T4 Lysozyme Core Repacking Mutant V103iTA
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L80|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G0P|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149g
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|147L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L91|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|2L78|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|4ARJ|A Chain A, Crystal Structure Of A Pesticin (Translocation And
Receptor Binding Domain) From Y. Pestis And T4-Lysozyme
Chimera
pdb|4ARJ|B Chain B, Crystal Structure Of A Pesticin (Translocation And
Receptor Binding Domain) From Y. Pestis And T4-Lysozyme
Chimera
Length = 339
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 79 VSLMQELLSRRGT--APKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAK 135
+S ++E L R +E+++I+ + I+K ++ Y IG G K
Sbjct: 153 ISQLKEFLRRSVNIVVNIFEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPS 205
Query: 136 HNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
NAAKS LD+ IGR+ ++ + E LF V+ G L+ A + PVY++
Sbjct: 206 LNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 257
>pdb|122L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDSAVRGILRNAKL-----KPVYDS 90
>pdb|130L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QUO|A Chain A, L99aE108V MUTANT OF T4 LYSOZYME
Length = 162
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|143L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G0Q|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149i
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|146L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G0J|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152s
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CV5|A Chain A, T4 Lysozyme Mutant L133m
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|237L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L93|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L87|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CV4|A Chain A, T4 Lysozyme Mutant L118m
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|235L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CU5|A Chain A, T4 Lysozyme Mutant L91m
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CV3|A Chain A, T4 Lysozyme Mutant L121m
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|160L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|220L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|222L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QSQ|A Chain A, Cavity Creating Mutation
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|199L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|238L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QS9|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1P6Y|A Chain A, T4 Lysozyme Core Repacking Mutant M120y/ta
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|218L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|214L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|213L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|215L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|145L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|211L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|140L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L39|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
pdb|1L40|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QUH|A Chain A, L99gE108V MUTANT OF T4 LYSOZYME
Length = 162
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CV6|A Chain A, T4 Lysozyme Mutant V149m
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CV1|A Chain A, T4 Lysozyme Mutant V111m
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CUQ|A Chain A, T4 Lysozyme Mutant V103m
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CV0|A Chain A, T4 Lysozyme Mutant F104m
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|197L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L79|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L88|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G0L|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152v
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L62|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|244L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|159L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1TLA|A Chain A, Hydrophobic Core Repacking And Aromatic-Aromatic
Interaction In The Thermostable Mutant Of T4 Lysozyme
Ser 117 (Right Arrow) Phe
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L55|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|161L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1I6S|A Chain A, T4 Lysozyme Mutant C54tC97AN101A
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1PQM|A Chain A, T4 Lysozyme Core Repacking Mutant V149iT152VTA
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G0M|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152i
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1C63|A Chain A, T4 Lysozyme Mutant C54tC97AL121A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C64|A Chain A, T4 Lysozyme Mutant C54tC97AL121A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C65|A Chain A, T4 Lysozyme Mutant C54tC97AL121A IN THE PRESENCE OF 8 ATM
Xenon
pdb|200L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|164L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1CVK|A Chain A, T4 Lysozyme Mutant L118a
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1C6C|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 16 ATM
Argon
pdb|1C6D|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 16 ATM
Krypton
pdb|1C6E|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 2 ATM
Xenon
pdb|1C6F|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 32 ATM
Argon
pdb|1C6G|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 4 ATM
Krypton
pdb|1C6H|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 4 ATM
Xenon
pdb|1C6I|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C6J|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6K|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 8 ATM
Xenon
pdb|181L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|182L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|183L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|184L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|185L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|186L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|187L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|188L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|1L83|A Chain A, A Cavity-Containing Mutant Of T4 Lysozyme Is Stabilized By
Buried Benzene
pdb|1L90|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
pdb|1NHB|A Chain A, Specificity Of Ligand Binding In A Buried Non-polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|3DMV|A Chain A, Free Of Ligand Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DMZ|A Chain A, Hexafluorobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DN0|A Chain A, Pentafluorobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DN1|A Chain A, Chloropentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant
pdb|3DN2|A Chain A, Bromopentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant
pdb|3DN3|A Chain A, Iodopentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant
pdb|3DN4|A Chain A, Iodobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DN6|A Chain A, 1,3,5-Trifluoro-2,4,6-Trichlorobenzene Binding In The
Hydrophobic Cavity Of T4 Lysozyme L99a Mutant
pdb|3DMX|A Chain A, Benzene Binding In The Hydrophobic Cavity Of T4 Lysozyme
L99a Mutant
pdb|3HH3|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity - 1,2-Dihydro-1,2-Azaborine
pdb|3HH4|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity - Benzene As Control
pdb|3HH5|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity - 1-Ethyl-2-Hydro-1,2-Azaborine
pdb|3HH6|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity -Ethylbenzene As Control
pdb|2LCB|A Chain A, Solution Structure Of A Minor And Transiently Formed State
Of A T4 Lysozyme Mutant
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|141L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|175L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|175L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1LLH|A Chain A, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|229L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|157L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|227L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|228L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|232L|A Chain A, T4 Lysozyme Mutant M120k
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|252L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|231L|A Chain A, T4 Lysozyme Mutant M106k
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 82 MQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE++ S P+Y L++ E + IF + + ++ +A G G++KKEA+ AA+
Sbjct: 185 LQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKT---IATGKGRTKKEAEKEAAR 241
Query: 141 SVLDQLI 147
++L+
Sbjct: 242 IAYEKLL 248
>pdb|1C60|A Chain A, T4 Lysozyme Mutant C54tC97AF153A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C61|A Chain A, T4 Lysozyme Mutant C54tC97AF153A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C62|A Chain A, T4 Lysozyme Mutant C54tC97AF153A IN THE PRESENCE OF 8 ATM
Xenon
pdb|1L85|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L54|A Chain A, The Structural And Thermodynamic Consequences Of Burying A
Charged Residue Within The Hydrophobic Core Of T4
Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|212L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 168
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|165L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|2B6T|A Chain A, T4 Lysozyme Mutant L99a At 200 Mpa
pdb|2B6W|A Chain A, T4 Lysozyme Mutant L99a At 200 Mpa
pdb|2B6X|A Chain A, T4 Lysozyme Mutant L99a At 200 Mpa
pdb|2B6Y|A Chain A, T4 Lysozyme Mutant L99a At Ambient Pressure
pdb|2B6Z|A Chain A, T4 Lysozyme Mutant L99a At Ambient Pressure
pdb|2B70|A Chain A, T4 Lysozyme Mutant L99a At Ambient Pressure
pdb|2B72|A Chain A, T4 Lysozyme Mutant L99a At 100 Mpa
pdb|2B73|A Chain A, T4 Lysozyme Mutant L99a At 100 Mpa
pdb|2B74|A Chain A, T4 Lysozyme Mutant L99a At 100 Mpa
pdb|2B75|A Chain A, T4 Lysozyme Mutant L99a At 150 Mpa
pdb|2OTY|X Chain X, 1,2-Dichlorobenzene In Complex With T4 Lysozyme L99a
pdb|2OTZ|X Chain X, N-Methylaniline In Complex With T4 Lysozyme L99a
pdb|2OU0|X Chain X, 1-Methylpyrrole In Complex With T4 Lysozyme L99a
pdb|2RAY|X Chain X, Beta-chlorophenetole In Complex With T4 Lysozyme L99a
pdb|2RAZ|X Chain X, 4-(Methylthio)nitrobenzene In Complex With T4 Lysozyme
L99a
pdb|2RB0|X Chain X, 2,6-Difluorobenzylbromide Complex With T4 Lysozyme L99a
pdb|2RB2|X Chain X, 3-Methylbenzylazide In Complex With T4 Lysozyme L99a
pdb|2RB1|X Chain X, 2-Ethoxyphenol In Complex With T4 Lysozyme L99a
Length = 162
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1KS3|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L59|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3RUN|A Chain A, New Strategy To Analyze Structures Of Glycopeptide
Antibiotic-Target Complexes
Length = 168
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|142L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1P56|A Chain A, Duplication-Extension Of Helix A Of T4 Lysozyme
Length = 176
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3K2R|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme Mutant
K65v1R76V1
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMCQKEN--LFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAECLFNQDVDAAVCGILRNAKL-----KPVYDS 90
>pdb|158L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G0G|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152a
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|166L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1C66|A Chain A, T4 Lysozyme Mutant C54tC97AL121AL133A IN THE PRESENCE OF 8
Atm Argon
pdb|1C67|A Chain A, T4 Lysozyme Mutant C54tC97AL121AL133A IN THE PRESENCE OF 8
Atm Krypton
pdb|1C68|A Chain A, T4 Lysozyme Mutant C54tC97AL121AL133A IN THE PRESENCE OF 8
Atm Xenon
pdb|251L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1C6L|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Argon
pdb|1C6M|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Krypton
pdb|1C6N|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Xenon
pdb|1L84|A Chain A, A Cavity-Containing Mutant Of T4 Lysozyme Is Stabilized By
Buried Benzene
pdb|1L89|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|4GBR|B Chain B, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 163
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QUD|A Chain A, L99g Mutant Of T4 Lysozyme
Length = 162
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L98|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
E G
Sbjct: 104 FEMG 107
>pdb|2LC9|A Chain A, Solution Structure Of A Minor And Transiently Formed State
Of A T4 Lysozyme Mutant
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|2O79|A Chain A, T4 Lysozyme With C-Terminal Extension
Length = 170
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1QSB|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|155L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|156L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|138L|A Chain A, Rapid Crystallization Of T4 Lysozyme By Intermolecular
Disulfide Crosslinking
Length = 164
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3C82|A Chain A, Bacteriophage Lysozyme T4 Lysozyme Mutant K85aR96H
Length = 164
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + + H CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----APVYDSLD--AVRH------CALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|2NTH|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant L118r1
Length = 164
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3C7Y|A Chain A, Mutant R96a Of T4 Lysozyme In Wildtype Background At 298k
Length = 164
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RACALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|2HUK|A Chain A, Crystal Structure Of T4 Lysozyme V131c Synthetic Dimer
pdb|3G3V|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r1) At
291 K
pdb|1ZUR|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r1f)
pdb|1ZWN|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r1b)
pdb|2A4T|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r7)
pdb|2CUU|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (v131r1)
Length = 164
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G07|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149c
Length = 164
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3G3W|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (T151r1) At
291 K
pdb|3G3X|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (T151r1) At
100 K
Length = 164
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|2IGC|A Chain A, Structure Of Spin Labeled T4 Lysozyme Mutant T115r1a
pdb|2NTG|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant T115r7
pdb|2OU8|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant T115r1 At
Room Temperature
Length = 164
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1G0K|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152c
Length = 164
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|254L|A Chain A, Lysozyme
Length = 164
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKL 154
+E+++I+ + I+K ++E + IG +K + NAAKS LD+ IGR+ +
Sbjct: 4 FEMLRIDEGLRLKIYK-----STEGYYTIGIGHLLTKSPS-LNAAKSELDKAIGRNTNGV 57
Query: 155 MC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
+ + E LF V+ G L+ A + PVY++
Sbjct: 58 ITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|221L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKSIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1LYH|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VIGKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|2OU9|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant T115r1R119A
Length = 164
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1P2L|A Chain A, T4 Lysozyme Core Repacking Mutant V87iTA
Length = 164
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + P+Y++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPIYDS 90
>pdb|3SB9|A Chain A, Cu-Mediated Dimer Of T4 Lysozyme R76hR80H BY SYNTHETIC
SYMMETRIZATION
pdb|3SB9|B Chain B, Cu-Mediated Dimer Of T4 Lysozyme R76hR80H BY SYNTHETIC
SYMMETRIZATION
pdb|3SBA|A Chain A, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|B Chain B, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|C Chain C, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|D Chain D, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|E Chain E, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|F Chain F, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
Length = 165
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 7 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 59
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L A + PVY++
Sbjct: 60 VITKDEAEKLFNQDVDAAVHGILHNAKL-----KPVYDS 93
>pdb|1L34|A Chain A, High-Resolution Structure Of The Temperature-Sensitive
Mutant Of Phage Lysozyme, Arg 96 (Right Arrow) His
pdb|3F8V|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + + H CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLD--AVRH------CALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1QT4|A Chain A, T26q Mutant Of T4 Lysozyme
Length = 164
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYQIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L76|A Chain A, Tolerance Of T4 Lysozyme To Proline Substitutions Within
The Long Interdomain Alpha-Helix Illustrates The
Adaptability Of Proteins To Potentially Destabilizing
Lesions
Length = 164
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFKVE-PNPV-GQLQEACMTRKWPPPVYET 188
++ + E LF + P V G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVPAAVRGILRNAKL-----KPVYDS 90
>pdb|1PQJ|A Chain A, T4 Lysozyme Core Repacking Mutant A111vCORE10TA
Length = 164
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + P+Y++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPIYDS 90
>pdb|3FI5|A Chain A, Crystal Structure Of T4 Lysozyme Mutant R96w
pdb|3FI5|B Chain B, Crystal Structure Of T4 Lysozyme Mutant R96w
pdb|3FI5|C Chain C, Crystal Structure Of T4 Lysozyme Mutant R96w
pdb|3FI5|D Chain D, Crystal Structure Of T4 Lysozyme Mutant R96w
Length = 164
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RWCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|177L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|178L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1PQD|A Chain A, T4 Lysozyme Core Repacking Mutant Core10TA
Length = 164
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + P+Y++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPIYDS 90
>pdb|1P3N|A Chain A, Core Redesign Back-Revertant I103vCORE10
Length = 164
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + P+Y++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPIYDS 90
>pdb|1P37|A Chain A, T4 Lysozyme Core Repacking Back-Revertant L102mCORE10
Length = 164
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + P+Y++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPIYDS 90
>pdb|255L|A Chain A, Hydrolase
Length = 164
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K + Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------NTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|248L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y G+G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTAGAGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 239 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 291
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 292 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 325
>pdb|1G1V|A Chain A, T4 Lysozyme Mutant C54tC97AI58T
Length = 164
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
+ + E LF V+ G L+ A + PVY++
Sbjct: 57 VTTKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|247L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAK-----AKPVYDS 90
>pdb|3C80|A Chain A, T4 Lysozyme Mutant R96y At Room Temperature
Length = 164
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RYCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1QT3|A Chain A, T26d Mutant Of T4 Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYDIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3L2X|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme Mutant
115-119rx
Length = 164
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1LYG|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VINKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1D3J|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E +F V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKMFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|148L|E Chain E, A Covalent Enzyme-Substrate Intermediate With Saccharide
Distortion In A Mutant T4 Lysozyme
pdb|180L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|180L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|1QTV|A Chain A, T26e Apo Structure Of T4 Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYEIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|243L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
+ + E LF V+ G L+ A + PVY++
Sbjct: 57 VATKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 293 KLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTP 346
K+++ +DE++ + +D + L+Y F+D A GF + L TTP
Sbjct: 2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTP 55
>pdb|1EPY|A Chain A, T4 Lysozyme Mutant, T21hC54TC97AQ141HT142H
Length = 164
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K + Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DHEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3VYY|A Chain A, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase A (dhx9)
pdb|3VYY|B Chain B, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase A (dhx9)
Length = 91
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 88 RRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI 147
+R P YE I N+ K+ + E Y +G+ +KK+A+ NAA+ ++ L+
Sbjct: 14 KRKMTPSYE---IRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNAARDFVNYLV 70
>pdb|3DN8|A Chain A, Iodopentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant (Seleno Version)
pdb|3DNA|A Chain A, Iodobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant (Seleno Version)
Length = 164
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 112 RISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEP 166
R+ + ++ Y IG G K NAAKS LD+ IGR+ ++ + E LF V+
Sbjct: 14 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 73
Query: 167 NPVGQLQEACMTRKWPPPVYET 188
G L+ A + PVY++
Sbjct: 74 AVRGILRNAKL-----KPVYDS 90
>pdb|169L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|C Chain C, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|D Chain D, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|E Chain E, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|259L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
pdb|257L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
pdb|258L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
pdb|260L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K + Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DHEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3SB5|B Chain B, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
pdb|3SB5|A Chain A, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
pdb|3SB5|C Chain C, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
pdb|3SB5|D Chain D, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
Length = 165
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 7 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 59
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 60 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 93
>pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna
Length = 74
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI 147
+Y L+ G ++ P+F + + + V GSG +KK+AK +AA+ L +
Sbjct: 21 QYMLLSQTGPVHAPLFVMSVEVNGQ----VFEGSGPTKKKAKLHAAEKALRSFV 70
>pdb|3CDQ|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RSCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3C81|A Chain A, Mutant K85a Of T4 Lysozyme In Wildtype Background At Room
Temperature
Length = 164
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----APVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 85 LLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVL 143
LL R +E+++I+ + I+K + Y IG G K NAAKS L
Sbjct: 202 LLRLRSVRNIFEMLRIDEGLRLKIYK-------NTEGYYTIGIGHLLTKSPSLNAAKSEL 254
Query: 144 DQLIGRDDEKLMCQKE 159
D+ IGR+ ++ + E
Sbjct: 255 DKAIGRNTNGVITKDE 270
>pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1
Length = 73
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI 147
+Y L+ G ++ P+F + + + V GSG +KK+AK +AA+ L +
Sbjct: 21 QYMLLSQTGPVHAPLFVMSVEVNGQ----VFEGSGPTKKKAKLHAAEKALRSFV 70
>pdb|245L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 112 RISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEP 166
R+ + ++ Y IG G K NAAKS LD+ IGR+ ++ + E LF V+
Sbjct: 14 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 73
Query: 167 NPVGQLQEACMTRKWPPPVYET 188
G L+ A + PVY++
Sbjct: 74 AVRGILRNAKL-----KPVYDS 90
>pdb|3DKE|X Chain X, Polar And Non-Polar Cavities In Phage T4 Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 112 RISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEP 166
R+ + ++ Y IG G K NAAKS LD+ IGR+ ++ + E LF V+
Sbjct: 14 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 73
Query: 167 NPVGQLQEACMTRKWPPPVYET 188
G L+ A + PVY++
Sbjct: 74 AVRGILRNAKL-----KPVYDS 90
>pdb|1P5C|A Chain A, Circular Permutation Of Helix A In T4 Lysozyme
pdb|1P5C|B Chain B, Circular Permutation Of Helix A In T4 Lysozyme
pdb|1P5C|C Chain C, Circular Permutation Of Helix A In T4 Lysozyme
pdb|1P5C|D Chain D, Circular Permutation Of Helix A In T4 Lysozyme
Length = 167
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 112 RISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEP 166
R+ + ++ Y IG G K NAAKS LD+ IGR+ ++ + E LF V+
Sbjct: 3 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 62
Query: 167 NPVGQLQEACMTRKWPPPVYET 188
G L+ A + PVY++
Sbjct: 63 AVRGILRNAKL-----KPVYDS 79
>pdb|1L16|A Chain A, Structural Analysis Of The Temperature-Sensitive Mutant Of
Bacteriophage T4 Lysozyme, Glycine 156 (Right Arrow)
Aspartic Acid
Length = 164
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex
Reveals A Sequence-Specific Read Out Of The Minor Groove
Length = 236
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI 147
+Y L+ G ++ P+F + + + V GSG +KK+AK +AA+ L +
Sbjct: 21 QYMLLSQTGPVHAPLFVMSVEVNGQ----VFEGSGPTKKKAKLHAAEKALRSFV 70
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 186 YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML 230
Y+ +G H + F + V+ EG G++KK+AK AA + L
Sbjct: 176 YDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSAL 220
>pdb|1LYI|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LM--CQKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VIDKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1D9W|A Chain A, Bacteriophage T4 Lysozyme Mutant
Length = 164
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|2O4W|A Chain A, T4 Lysozyme Circular Permutant
Length = 171
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 112 RISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEP 166
R+ + ++ Y IG G K NAAKS LD+ IGR+ ++ + E LF V+
Sbjct: 3 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 62
Query: 167 NPVGQLQEACMTRKWPPPVYET 188
G L+ A + PVY++
Sbjct: 63 AVRGILRNAKL-----KPVYDS 79
>pdb|1DYF|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|123L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ + + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNSKL-----KPVYDS 90
>pdb|1L74|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L75|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L36|A Chain A, Toward A Simplification Of The Protein Folding Problem: A
Stabilizing Polyalanine Alpha-Helix Engineered In T4
Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1DYD|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L73|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L04|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
pdb|1L05|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L20|A Chain A, Enhanced Protein Thermostability From Designed Mutations
That Interact With Alpha-helix Dipoles
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L57|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L13|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L71|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1DYE|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 227 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 279
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 280 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 313
>pdb|1L72|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|4E97|A Chain A, T4 Lysozyme L99aM102H WITH 2-Mercaptoethanol Bound
pdb|4E97|B Chain B, T4 Lysozyme L99aM102H WITH 2-Mercaptoethanol Bound
pdb|4EKP|A Chain A, T4 Lysozyme L99aM102H WITH NITROBENZENE BOUND
pdb|4EKP|B Chain B, T4 Lysozyme L99aM102H WITH NITROBENZENE BOUND
pdb|4EKQ|A Chain A, T4 Lysozyme L99aM102H WITH 4-Nitrophenol Bound
pdb|4EKQ|B Chain B, T4 Lysozyme L99aM102H WITH 4-Nitrophenol Bound
pdb|4EKR|A Chain A, T4 Lysozyme L99aM102H WITH 2-Cyanophenol Bound
pdb|4EKR|B Chain B, T4 Lysozyme L99aM102H WITH 2-Cyanophenol Bound
pdb|4EKS|A Chain A, T4 Lysozyme L99aM102H WITH ISOXAZOLE BOUND
pdb|4EKS|B Chain B, T4 Lysozyme L99aM102H WITH ISOXAZOLE BOUND
Length = 187
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 84 ELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSV 142
E L +G+ +E+++I+ + I+K + Y IG G K NAAKS
Sbjct: 16 ENLYFQGSMNIFEMLRIDEGLRLKIYK-------DCEGYYTIGIGHLLTKSPDLNAAKSE 68
Query: 143 LDQLIGRDDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
LD+ IGR+ ++ + E LF V+ G L+ A + PVY++
Sbjct: 69 LDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 113
>pdb|1LYD|A Chain A, Crystal Structure Of T4-Lysozyme Generated From Synthetic
Coding Dna Expressed In Escherichia Coli
pdb|2LZM|A Chain A, Structure Of Bacteriophage T4 Lysozyme Refined At 1.7
Angstroms Resolution
pdb|3LZM|A Chain A, Structural Studies Of Mutants Of T4 Lysozyme That Alter
Hydrophobic Stabilization
pdb|4LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|5LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|6LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|7LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
Length = 164
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|168L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|C Chain C, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|D Chain D, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|E Chain E, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1DYC|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|149L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1PQI|A Chain A, T4 Lysozyme Core Repacking Mutant I118lCORE7TA
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + P+Y++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGVLRNAKL-----KPMYDS 90
>pdb|1DYA|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L17|A Chain A, Hydrophobic Stabilization In T4 Lysozyme Determined
Directly By Multiple Substitutions Of Ile 3
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L38|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 78 PVSLMQELLSRRGTAPK----YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KK 132
PV++M L R + +E+++I+ + I+K ++ Y IG G K
Sbjct: 187 PVTIMTILYWRIYKETEKMNIFEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTK 239
Query: 133 EAKHNAAKSVLDQLIGRDDEKLMCQKE 159
NAAKS LD+ IGR+ ++ + E
Sbjct: 240 SPSLNAAKSELDKAIGRNTNGVITKDE 266
>pdb|1L11|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L58|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1T6H|A Chain A, Crystal Structure T4 Lysozyme Incorporating An Unnatural
Amino Acid P-Iodo-L-Phenylalanine At Position 153
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L10|A Chain A, Structural Studies Of Mutants Of The Lysozyme Of
Bacteriophage T4. The Temperature-Sensitive Mutant
Protein Thr157 (Right Arrow) Ile
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L14|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L52|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L60|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L22|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L07|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3FA0|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 162
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 77 TPVSLMQELLSRRGTAPK-----YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS- 130
P+ +M + SR K +E+++I+ + I+K ++ Y IG G
Sbjct: 217 VPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLL 269
Query: 131 KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVY 186
K NAAKS LD+ IGR+ ++ + E LF V+ G L+ A + PVY
Sbjct: 270 TKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVY 324
Query: 187 ET 188
++
Sbjct: 325 DS 326
>pdb|1L12|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 77 TPVSLMQELLSRRGTAPK-----YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS- 130
P+ +M + SR K +E+++I+ + I+K ++ Y IG G
Sbjct: 218 VPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLL 270
Query: 131 KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVY 186
K NAAKS LD+ IGR+ ++ + E LF V+ G L+ A + PVY
Sbjct: 271 TKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVY 325
Query: 187 ET 188
++
Sbjct: 326 DS 327
>pdb|3C8R|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RGCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L09|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L33|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 77 TPVSLMQELLSRRGTAPK-----YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS- 130
P+ +M + SR K +E+++I+ + I+K ++ Y IG G
Sbjct: 218 VPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLL 270
Query: 131 KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVY 186
K NAAKS LD+ IGR+ ++ + E LF V+ G L+ A + PVY
Sbjct: 271 TKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVY 325
Query: 187 ET 188
++
Sbjct: 326 DS 327
>pdb|1L70|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L97|A Chain A, Structure Of A Hinge-Bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
pdb|1L97|B Chain B, Structure Of A Hinge-Bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
pdb|1L96|A Chain A, Structure Of A Hinge-bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
Length = 164
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1CU3|A Chain A, T4 Lysozyme Mutant V87m
Length = 164
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + P+Y++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPMYDS 90
>pdb|1L02|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L15|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L00|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L01|A Chain A, Structural Studies Of Mutants Of The Lysozyme Of
Bacteriophage T4. The Temperature-Sensitive Mutant
Protein Thr157 (Right Arrow) Ile
Length = 164
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1WHQ|A Chain A, Solution Structure Of The N-Terminal Dsrbd From
Hypothetical Protein Bab28848
pdb|2RS6|A Chain A, Solution Structure Of The N-Terminal Dsrbd From Rna
Helicase A
Length = 99
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 88 RRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI 147
+R P YE I N+ K+ + E Y +G+ +KK+A+ NAA+ ++ L+
Sbjct: 18 KRKMTPAYE---IRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLV 74
>pdb|1L45|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L46|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1DYB|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L49|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L08|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1B6I|A Chain A, T4 Lysozyme Mutant With Cys 54 Replaced By Thr, Cys 97
Replaced By Ala, Thr 21 Replaced By Cys And Lys 124
Replaced By Cys (C54t,C97a,T21c,K124c)
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K + Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DCEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3SBB|C Chain C, Disulphide-Mediated Tetramer Of T4 Lysozyme R76cR80C BY
SYNTHETIC Symmetrization
Length = 165
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 7 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 59
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L A + PVY++
Sbjct: 60 VITKDEAEKLFNQDVDAAVCGILCNAKL-----KPVYDS 93
>pdb|3CDR|A Chain A, R96q Mutant Of Wildtype Phage T4 Lysozyme At 298 K
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RQCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3CDT|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L18|A Chain A, Hydrophobic Stabilization In T4 Lysozyme Determined
Directly By Multiple Substitutions Of Ile 3
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|223L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|225L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|226L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3C7W|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RKCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3C8Q|A Chain A, Contribution Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1C69|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C6A|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6B|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Xenon
pdb|1L69|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L48|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|150L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|B Chain B, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|C Chain C, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|D Chain D, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|256L|A Chain A, Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEILRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L44|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 18 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 70
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 71 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 104
>pdb|1L51|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1L47|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1DYG|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L06|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1KNI|A Chain A, Stabilizing Disulfide Bridge Mutant Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K + Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DCEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|128L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + P Y++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPTYDS 90
>pdb|3C8S|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 252 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 304
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 305 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 338
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 77 TPVSLMQELLSRRGTAPK-----YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS- 130
P+ +M + SR K +E+++I+ + I+K ++ Y IG G
Sbjct: 186 VPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLL 238
Query: 131 KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVY 186
K NAAKS LD+ IGR+ ++ + E LF V+ G L+ A + PVY
Sbjct: 239 TKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVY 293
Query: 187 ET 188
++
Sbjct: 294 DS 295
>pdb|3FAD|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V G L+ A + PVY++ + + H CA +N+
Sbjct: 57 VITKDEAEKLFNQDVAAAVRGILRNAKL-----KPVYDSLD--AVRH------CALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3C7Z|A Chain A, T4 Lysozyme Mutant D89aR96H AT ROOM TEMPERATURE
Length = 164
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY + + + H CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYASLD--AVRH------CALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 233 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 285
Query: 154 LMCQKE 159
++ + E
Sbjct: 286 VITKDE 291
>pdb|1L53|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L42|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
pdb|1L43|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLEIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|2RBN|A Chain A, N-Phenylglycinonitrile In Complex With T4 Lysozyme
L99aM102Q
pdb|2RBO|A Chain A, 2-Nitrothiophene In Complex With T4 Lysozyme L99aM102Q
pdb|2RBP|A Chain A, 2-(N-Propylthio)ethanol In Complex With T4 Lysozyme
L99aM102Q
pdb|2RBQ|A Chain A, 3-Methylbenzylazide In Complex With T4 L99aM102Q
pdb|2RBR|A Chain A, 2-Phenoxyethanol In Complex With T4 Lysozyme L99aM102Q
pdb|2RBS|A Chain A, (r)(+)-3-chloro-1-phenyl-1-propanol In Complex With T4
Lysozyme L99a/m102q
Length = 162
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1LGU|A Chain A, T4 Lysozyme Mutant L99aM102Q
pdb|1LGW|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 2-Fluoroaniline
pdb|1LGX|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 3,5-Difluoroaniline
pdb|1LI2|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY PHENOL
pdb|1LI3|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 3-Chlorophenol
pdb|1LI6|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 5-Methylpyrrole
pdb|1OV5|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 2-
Allylphenol
pdb|1OV7|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 2-Allyl-6-
Methyl-Phenol
pdb|1OVH|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 2-Chloro-6-
Methyl-Aniline
pdb|1OVJ|A Chain A, T4 Lysozyme Cavity Mutant L99a/m102q Bound With
3-fluoro-2- Methyl_aniline
pdb|1OVK|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH N-Allyl-
Aniline
pdb|1OWY|A Chain A, T4 Lysozyme Cavity Mutant L99a/m102q Bound With 2-propyl-
Aniline
pdb|1OWZ|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 4-
Fluorophenethyl Alcohol
pdb|1XEP|A Chain A, Catechol In Complex With T4 Lysozyme L99aM102Q
Length = 164
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|209L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 167
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMCQKE 159
++ + E
Sbjct: 57 VITKDE 62
>pdb|236L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + P Y++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPAYDS 90
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 244 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 296
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 297 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 330
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 244 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 296
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 297 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 330
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 82 MQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAK 140
++ L+ R +E+++I+ + I+K ++ Y IG G K NAAK
Sbjct: 213 LRIFLAARRQLNIFEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAK 265
Query: 141 SVLDQLIGRDDEKLMCQKE 159
S LD+ IGR+ ++ + E
Sbjct: 266 SELDKAIGRNTNGVITKDE 284
>pdb|172L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L03|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L50|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|173L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLEIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 90
>pdb|1ZYT|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (A82r1)
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMCQKE 159
++ + E
Sbjct: 57 VITKDE 62
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 241 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 293
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 294 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 327
>pdb|1L35|A Chain A, Structure Of A Thermostable Disulfide-Bridge Mutant Of
Phage T4 Lysozyme Shows That An Engineered Crosslink In
A Flexible Region Does Not Increase The Rigidity Of The
Folded Protein
Length = 164
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 112 RISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEP 166
R+ + ++ Y IG G K NAAKS LD+ IGR+ ++ + E LF V+
Sbjct: 14 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 73
Query: 167 NPVGQLQEACMTRKWPPPVYET 188
G L+ A + PVY++
Sbjct: 74 AVRGILRNAKL-----KPVYDS 90
>pdb|246L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMCQKE 159
++ + E
Sbjct: 57 VITKDE 62
>pdb|2HUM|A Chain A, Crystal Structure Of T4 Lysozyme D72c Synthetic Dimer
pdb|2HUM|B Chain B, Crystal Structure Of T4 Lysozyme D72c Synthetic Dimer
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMCQKE 159
++ + E
Sbjct: 57 VITKDE 62
>pdb|1PQK|A Chain A, Repacking Of The Core Of T4 Lysozyme By Automated Design
pdb|1PQK|B Chain B, Repacking Of The Core Of T4 Lysozyme By Automated Design
pdb|1PQK|C Chain C, Repacking Of The Core Of T4 Lysozyme By Automated Design
Length = 164
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 56
Query: 154 LMCQKE 159
++ + E
Sbjct: 57 VITKDE 62
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 205 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 257
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V+ G L+ A + PVY++
Sbjct: 258 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 291
>pdb|3VAR|A Chain A, Crystal Structure Of Dnpep, Znzn Form
pdb|3VAT|A Chain A, Crystal Structure Of Dnpep, Znmg Form
Length = 496
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 207 NVYKEEGMGKSKKIAKREAALNMLKFLETVP 237
N+Y + MG+++K A + AA +LKF+ P
Sbjct: 20 NLYFQGAMGRARKEAVQAAARELLKFVNRSP 50
>pdb|1D3N|A Chain A, Methionine Core Mutation
Length = 164
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 112 RISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEP 166
R+ + ++ Y IG G K NAAKS LD+ IGR+ ++ + E LF V+
Sbjct: 14 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 73
Query: 167 NPVGQLQEACMTRKWPPPVYETEE 190
G L+ A PVY++ +
Sbjct: 74 AVRGILRNAKX-----KPVYDSXD 92
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K + Y IG G K NAAKS LD+ IGR+
Sbjct: 215 FEMLRIDEGLRLKIYK-------NTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 267
Query: 154 LMCQKE 159
++ + E
Sbjct: 268 VITKDE 273
>pdb|1CX6|A Chain A, T4 Lysozyme Substituted With Selenomethionine
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 112 RISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEP 166
R+ + ++ Y IG G K NAAKS LD+ IGR+ ++ + E LF V+
Sbjct: 14 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 73
Query: 167 NPVGQLQEACMTRKWPPPVYETEE 190
G L+ A PVY++ +
Sbjct: 74 AVRGILRNAKX-----KPVYDSXD 92
>pdb|3F9L|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V G L+ A + PVY++ + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVAAAVRGILRNAKL-----KPVYDSLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|3C83|A Chain A, Bacteriophage T4 Lysozyme Mutant D89a In Wildtype
Background At Room Temperature
Length = 164
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
++ + E LF V+ G L+ A + PVY + + CA +N+
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYASLDAV--------RRCALINMV 103
Query: 210 KEEG 213
+ G
Sbjct: 104 FQMG 107
>pdb|1L31|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTR 179
++ + E LF V+ G L+ A + R
Sbjct: 57 VITKDEAEKLFNQDVDAAVRGILRNAKLKR 86
>pdb|167L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|167L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 112 RISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEKLMC--QKENLFK--VEP 166
R+ + ++ Y IG G K NAAKS LD+ IGR+ ++ + E LF V+
Sbjct: 14 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 73
Query: 167 NPVGQLQEACMTRKWPPPVYET 188
G L+ A + PVY++
Sbjct: 74 AVRGILRNAKL-----KPVYDS 90
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHN 137
VS+++ L S +A +E+++I+ + I+K + Y IG G K N
Sbjct: 209 VSIIRCLSS---SANIFEMLRIDEGLRLKIYK-------NTEGYYTIGIGHLLTKSPSLN 258
Query: 138 AAKSVLDQLIGRDDEKLMCQKE 159
AAKS LD+ IGR+ ++ + E
Sbjct: 259 AAKSELDKAIGRNTNGVITKDE 280
>pdb|1SWY|A Chain A, Use Of A Halide Binding Site To Bypass The 1000-Atom Limit
To Ab Initio Structure Determination
pdb|1SX2|A Chain A, Use Of A Halide Binding Site To Bypass The 1000-Atom Limit
To Structure Determination By Direct Methods
pdb|1SX7|A Chain A, Use Of An Ion-Binding Site To Bypass The 1000-Atom Limit
To Ab Initio Structure Determination By Direct Methods
pdb|1SWZ|A Chain A, Use Of An Ion-Binding Site To Bypass The 1000-Atom Limit
To Ab Initio Structure Determination By Direct Methods
Length = 164
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
++ + E LF V G L+ A + PVY++
Sbjct: 57 VITKDEAEKLFNQDVAAAVRGILRNAKL-----KPVYDS 90
>pdb|1L24|A Chain A, Enhanced Protein Thermostability From Site-directed
Mutations That Decrease The Entropy Of Unfolding
Length = 164
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS-KKEAKHNAAKSVLDQLIGRDDEK 153
+E+++I+ + I+K ++ Y IG G K NAAKS LD+ IGR+
Sbjct: 4 FEMLRIDEGLRLKIYK-------DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNG 56
Query: 154 LMCQKE 159
++ + E
Sbjct: 57 VITKDE 62
>pdb|1T8A|A Chain A, Use Of Sequence Duplication To Engineer A Ligand-Triggered
Long-Distance Molecular Switch In T4 Lysosyme
pdb|1T97|A Chain A, Use Of Sequence Duplication To Engineer A Ligand-Triggered
Long-Distance Molecular Switch In T4 Lysosyme
pdb|1T97|B Chain B, Use Of Sequence Duplication To Engineer A Ligand-Triggered
Long-Distance Molecular Switch In T4 Lysosyme
pdb|2F2Q|A Chain A, High Resolution Crystal Strcuture Of T4 Lysosyme Mutant
L20r63A LIGANDED TO GUANIDINIUM ION
pdb|2F32|A Chain A, Xray Crystal Structure Of Lysozyme Mutant L20R63A LIGANDED
To Ethylguanidinium
pdb|2F47|A Chain A, Xray Crystal Structure Of T4 Lysozyme Mutant L20R63A
Liganded To Methylguanidinium
Length = 175
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 95 YELIQIEGAINEPIFK-----YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149
+E+++I+ + I+K Y I + +I + KS+ + NAAKS LD+ IG
Sbjct: 4 FEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSINAAKSELDKAINAAKSELDKAIGA 63
Query: 150 DDEKLMC--QKENLFK--VEPNPVGQLQEACMTRKWPPPVYET 188
+ ++ + E LF V+ G L+ A + PVY++
Sbjct: 64 NTNGVITKDEAEKLFNQDVDAAVRGILRNAKL-----KPVYDS 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,676,452
Number of Sequences: 62578
Number of extensions: 450799
Number of successful extensions: 1234
Number of sequences better than 100.0: 380
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 360
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 404
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)