BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5350
(377 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZYA5|PRKAA_XENLA Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog A OS=Xenopus laevis GN=prkra-a PE=2
SV=1
Length = 309
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 160/338 (47%), Gaps = 55/338 (16%)
Query: 51 PKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFK 110
PK+S+ E+ L+ MR TP+ L+ E ++ G P Y L + EG + P F
Sbjct: 10 PKMSS-----EKPTSLDAMRATNPCETPIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFT 64
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF-------K 163
+R+ + ++G G SKK AK AA+ L+ L G D K + + L +
Sbjct: 65 FRLVIGD----ITSLGEGPSKKTAKQKAAEFALNILRG-DTSKCLPVTDTLRDPKKPPNQ 119
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
++ NPVG LQE + + W P Y + +G PH+R FT+ V + E G G SK++AKR
Sbjct: 120 MQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKR 179
Query: 224 EAALNMLKFLETVPIE-IP-----EKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQ 277
AA +L +T+ + IP K G D S+G K
Sbjct: 180 VAAEKLLTKFKTISTDNIPLNKLIGNKMGCTWDSMRNSSGEK------------------ 221
Query: 278 YHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQ 337
S + P LS N D + L+D+++EL + ++++DI+E S +Q
Sbjct: 222 ----ISMLKRSP-----LSIPN-----TDYVKMLKDVAEELDFNLTYLDIDELSVNGQYQ 267
Query: 338 SLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
L +L+T P+TV GTG S A +A + AL +L+IM
Sbjct: 268 CLAELSTNPITVCHGTGISCGNAHNDAAHNALQYLKIM 305
>sp|Q91836|PRKAB_XENLA Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog B OS=Xenopus laevis GN=prkra-b PE=1
SV=1
Length = 298
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 153/328 (46%), Gaps = 50/328 (15%)
Query: 61 EEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESR 120
E+ L MR TP+ L+ E ++ G P Y L + EG + P F +R+ +
Sbjct: 4 EKPTSLNAMRATNPCETPIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFTFRLVIGD--- 60
Query: 121 LYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF-------KVEPNPVGQLQ 173
++G G SKK K AA+ L+ L G D K + + L +++ NPVG LQ
Sbjct: 61 -ITSLGEGPSKKTPKQKAAEFALNILRG-DTSKCLPVTDTLRDPKKPPNQMQENPVGSLQ 118
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
E + + W P Y + +G PH+R FT+ V + E G G SK++AKR AA +L
Sbjct: 119 ELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKF 178
Query: 234 ETVPIE-IP-----EKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTK 287
+T+ + IP K G D S+G K S +
Sbjct: 179 KTISTDNIPLNKLIGNKMGCTWDSMRNSSGEK----------------------ISMLKR 216
Query: 288 GPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPV 347
P LS N D + L+D+++EL + ++++DI+E S +Q L +L+T P+
Sbjct: 217 SP-----LSIPN-----TDYVKMLKDVAEELDFNLTYLDIDELSVNGQYQCLAELSTNPI 266
Query: 348 TVFCGTGASIEVAKIEAVYRALDFLQIM 375
TV GTG S A +A + AL +L+IM
Sbjct: 267 TVCHGTGISCGNAHNDAAHNALQYLKIM 294
>sp|Q7SXR1|TRBP2_DANRE RISC-loading complex subunit tarbp2 OS=Danio rerio GN=tarbp2 PE=2
SV=1
Length = 346
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 161/343 (46%), Gaps = 55/343 (16%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ + G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN----CTG 75
Query: 127 SG------------------KSKKEAKHNAAKSVLDQLIGRDDEKLMCQKE-----NLFK 163
G K D +G + E Q E + +
Sbjct: 76 HGPSKKAAKHKAAEAALKMLKGGMLGGIGGNGMEGDGFVGIEMEGECPQSEMKSSSSTQQ 135
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 136 AECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAKR 195
Query: 224 EAALNMLKFLETVPIEIPEKKQGEDVD-----------EKGESNGLKHTHDSTFLTPQIL 272
AA ML + VP+++ + E D E G+S GL T DS L
Sbjct: 196 NAAAKMLSRIHDVPVDMRSSHEAEAEDDTFNMQIGGRLEGGKSKGLGCTWDS--LRNSAG 253
Query: 273 KKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSK 332
+KI Q L L + ID + L +LS+E ++ VS++DIEE+S
Sbjct: 254 EKILQ------------LRCHPLGQSDSID--SNFCSLLRELSEEQRFGVSYLDIEERSL 299
Query: 333 ADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ +Q L++L+T P+TV G +S++ A+ A + AL +L+IM
Sbjct: 300 SGLYQCLVELSTQPITVCHGFASSLDAARASAAHNALQYLKIM 342
>sp|P97473|TRBP2_MOUSE RISC-loading complex subunit TARBP2 OS=Mus musculus GN=Tarbp2 PE=1
SV=2
Length = 365
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 163/356 (45%), Gaps = 62/356 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLD--------------------------------- 144
G SKK A KH S+L+
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSLLDSSPPEDTPVVAAEAAAPVPS 135
Query: 145 QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
++ R M + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 AVLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTC 195
Query: 205 YVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS 264
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H S
Sbjct: 196 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HFS 245
Query: 265 TFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDELK 319
++ ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 IGVSSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSVGSLGALGSACCSVLSELSEEQA 305
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ +A +RAL +L+IM
Sbjct: 306 FHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAARGDAAHRALQYLRIM 361
>sp|Q5BJ52|TRBP2_XENTR RISC-loading complex subunit tarbp2 OS=Xenopus tropicalis GN=tarbp2
PE=2 SV=2
Length = 351
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 165/348 (47%), Gaps = 56/348 (16%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAI 125
+E M ++ +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ +
Sbjct: 18 IEQMLASSPGKTPISLLQEYGTRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN----CT 73
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF----------------------- 162
G G SKK AKH AA+ L L G D +MC++ ++
Sbjct: 74 GQGPSKKAAKHKAAEVALSLLKGGDMFGMMCEENSVMLSVEQPVELREVADVSPPPTNRN 133
Query: 163 ------------KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK 210
+ E NPVG LQE + + W P Y + +G H + FT+ V +
Sbjct: 134 HTIEMKPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFL 193
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD-STFLTP 269
E G G SKK+AKR AA ML + VP E E + E +++ L + T T
Sbjct: 194 EIGSGTSKKLAKRNAAAKMLLQIHRVPAEHRESGETEPEEDQFSMGKLDGSRGRGTACTW 253
Query: 270 QILKKIQQYHTVFSQKTKGPLLEKLLSTRN--LIDEVEDPILYLEDLSDELKYRVSFVDI 327
L+ + G EK+L R+ L L+DLS+E +++S++DI
Sbjct: 254 DSLR-----------NSSG---EKILHLRSNPLTILSSGFCSLLQDLSEEQSFQISYLDI 299
Query: 328 EEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+E S + +Q L++L+T P TV G+ + + A+ A + AL +L+IM
Sbjct: 300 DEPSLSGLYQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIM 347
>sp|Q4SS66|TRBP2_TETNG RISC-loading complex subunit tarbp2 OS=Tetraodon nigroviridis
GN=tarbp2 PE=3 SV=1
Length = 345
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 159/347 (45%), Gaps = 64/347 (18%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ + G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVAVGEIN----CTG 75
Query: 127 SGKS----------------KKEAKHNAAKSV-LDQLI-------GRDDEKLMCQKENLF 162
G S K A SV +D + G + M N
Sbjct: 76 QGPSKKAAKHKAAEAALKMLKGGLGAPAGFSVGVDGFVEVDVSTDGDSSQSEMKTSGNSQ 135
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
+ E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AK
Sbjct: 136 QTECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAK 195
Query: 223 REAALNMLKFLETVPIEIPEKKQGEDVD--------------EKGESNGLKHTHDSTFLT 268
R AA ML + VP+++ + D D E G+S T DS L
Sbjct: 196 RNAAAKMLSRIHDVPVDL---RTSNDADPEEDTFNMHMGSRTESGKSKSFSCTWDS--LR 250
Query: 269 PQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIE 328
+KI Q + PL + + N L DLS E ++ VS++D+E
Sbjct: 251 NSAGEKILQLRSH-------PL--GIPTDSNFCS-------LLSDLSLEQRFDVSYLDLE 294
Query: 329 EKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
E+S + Q L++L+T P+TV G +S + A+ A + AL +L+IM
Sbjct: 295 ERSLSGLCQCLVELSTQPITVCHGCASSTDAARASAAHNALQYLKIM 341
>sp|Q2HJ92|PRKRA_BOVIN Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Bos taurus GN=PRKRA PE=2 SV=1
Length = 313
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNMVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCSSAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>sp|Q6GPZ1|TRBP2_XENLA RISC-loading complex subunit tarbp2 OS=Xenopus laevis GN=tarbp2
PE=2 SV=2
Length = 351
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 163/355 (45%), Gaps = 70/355 (19%)
Query: 66 LEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAI 125
+E M ++ +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+
Sbjct: 18 IEQMLASSPGKTPISLLQEYGTRVGKTPVYDLLKAEGQAHQPNFTFRVSVGD----INCT 73
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF----------------------- 162
G G SKK AKH AA+ L L + +MC++ ++
Sbjct: 74 GQGPSKKAAKHKAAEVALSLLKEGEMFGVMCEENSVVLSVEQPAELKEVADVSPPPTTRN 133
Query: 163 ------------KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK 210
+ E NPVG LQE + + W P Y + +G H + FT+ V +
Sbjct: 134 HTIEMKPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFL 193
Query: 211 EEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK--------GESNGLKHTH 262
E G G SKK+AKR AA ML + VP E E + E +++ S G T
Sbjct: 194 EIGSGTSKKLAKRNAAAKMLLQIHQVPAEHRESGETEPEEDQFSVGKLDGSRSRGTACTW 253
Query: 263 DSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN--LIDEVEDPILYLEDLSDELKY 320
DS + + G EK+L R+ L L+DLS+E +
Sbjct: 254 DSL------------------RNSSG---EKILHLRSNPLTILSSGFCSLLQDLSEEQSF 292
Query: 321 RVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++S++DI+E+S + Q L++L+T P TV G+ + + A+ A + AL +L+IM
Sbjct: 293 QISYLDIDERSLSGLCQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIM 347
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 30 VKVEENSPSRVLFDNNEIKQIPKVS----TNNLPLEEAARLEVMRLNTGDRTPVSLMQEL 85
V EENS + E+K++ VS T N +E L + + PV +QEL
Sbjct: 102 VMCEENSVVLSVEQPAELKEVADVSPPPTTRNHTIEMKPPLSAQQ---SECNPVGALQEL 158
Query: 86 LSRRGTA-PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD 144
+ ++G P+Y + Q G P + ++T ++ IGSG SKK AK NAA +L
Sbjct: 159 VVQKGWRLPEYTVTQESG----PAHRKEFTMTCRVERFLEIGSGTSKKLAKRNAAAKMLL 214
Query: 145 QL 146
Q+
Sbjct: 215 QI 216
>sp|Q4V8C7|PRKRA_RAT Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Rattus norvegicus GN=Prkra PE=1 SV=1
Length = 313
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E ++ P YE + + ++ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGTKTKNIPVYECERSDVQVHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSLPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFSITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>sp|Q9WTX2|PRKRA_MOUSE Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Mus musculus GN=Prkra PE=1 SV=1
Length = 313
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + ++ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQVHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSLPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DIEE S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIASEQGFNITYLDIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>sp|O75569|PRKRA_HUMAN Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Homo sapiens GN=PRKRA PE=1 SV=1
Length = 313
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDV 249
+ G H+R +T + + E G G SKK AKR AA KFL PE
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAA---EKFLAKFSNISPE------- 198
Query: 250 DEKGESNGLKHTHDSTFLTPQILKKIQQYHTVF-SQKTKGPLLEK-LLSTRNLIDEVEDP 307
+ +N + H+ T +H++ S K LL++ LLS N D
Sbjct: 199 NHISLTNVVGHSLGCT------------WHSLRNSPGEKINLLKRSLLSIPN-----TDY 241
Query: 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYR 367
I L +++ E + ++++DI+E S +Q L +L+T+P+TV G+G S A+ +A +
Sbjct: 242 IQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN 301
Query: 368 ALDFLQIM 375
AL +L+I+
Sbjct: 302 ALQYLKII 309
>sp|Q3SWU0|TRBP2_RAT RISC-loading complex subunit TARBP2 OS=Rattus norvegicus GN=Tarbp2
PE=2 SV=1
Length = 365
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 160/356 (44%), Gaps = 62/356 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLD--------------------------------- 144
G SKK A KH S+L+
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSLLDSSVPEDTAVIAAEAAAPVPS 135
Query: 145 QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
L+ R M + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 ALLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTC 195
Query: 205 YVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDS 264
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H S
Sbjct: 196 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPDDD----------HFS 245
Query: 265 TFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN-----LIDEVEDPILYLEDLSDELK 319
++ ++ + + + EK+LS RN L L +LS E
Sbjct: 246 IGVSSRLDGLRNRGPGCTWDSLRNSVGEKILSLRNCSVGSLGSLGSACCSILSELSAEQA 305
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ + E A+ +A RAL +L+IM
Sbjct: 306 FHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAARGDAARRALQYLRIM 361
>sp|Q0IIG6|TRBP2_BOVIN RISC-loading complex subunit TARBP2 OS=Bos taurus GN=TARBP2 PE=2
SV=2
Length = 366
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 164/357 (45%), Gaps = 63/357 (17%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIGRD----------------------------------DE 152
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
+ + + +V+P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SAVPTRSSPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHD 263
V + E G G SKK+AKR AA ML + TVP++ + + E D+ H
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEPEDD----------HF 245
Query: 264 STFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDEL 318
S + ++ + + + EK+LS R+ + + L +LS+E
Sbjct: 246 SIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCSVLSELSEEQ 305
Query: 319 KYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+ VS++DIEE S + Q L++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 306 AFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIM 362
>sp|B0V3F8|PRKRA_DANRE Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog OS=Danio rerio GN=prkra PE=2 SV=2
Length = 282
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 149/307 (48%), Gaps = 42/307 (13%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D+TP+ L+ E + +APKYELI +G ++P F + +++ G G +KK A
Sbjct: 8 DKTPIQLLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTIGE----VTCKGRGSTKKAA 63
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP----NPVGQLQEACMTRKWPPPVYETEE 190
KH AA++ L +L+ RD + + + N E NPVG LQE M R W P Y
Sbjct: 64 KHEAAEAAL-KLLKRDSQIIDQRDNNGLSPEAGEASNPVGILQELAMQRVWCLPEYVVFM 122
Query: 191 TTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVD 250
TG H + FT+ + +E G G SKK+A+R AA NM+ L++
Sbjct: 123 ETGPGHMKEFTIACRLEGLEETGSGSSKKLARRAAAENMIAKLQS--------------- 167
Query: 251 EKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEK--LLSTRNLIDEVEDPI 308
L + + T+ P V+ + + EK LL L D I
Sbjct: 168 -------LSGSSEITWSPPS---------RVYVESLRNSTGEKVSLLKRTPLSLPNTDYI 211
Query: 309 LYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRA 368
L ++S EL ++V+++DI+E + +Q L++L+T PVTV G+G + A A + A
Sbjct: 212 QMLLEISLELGFQVTYIDIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNA 271
Query: 369 LDFLQIM 375
L +++++
Sbjct: 272 LQYIKMV 278
>sp|Q15633|TRBP2_HUMAN RISC-loading complex subunit TARBP2 OS=Homo sapiens GN=TARBP2 PE=1
SV=3
Length = 366
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 79/365 (21%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEA---------KHNAAKSVLDQLIGRDDE------------------------- 152
G SKK A KH S+L+ +
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVP 135
Query: 153 KLMCQKENLFKVEP---------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVC 203
++ + +++P NPVG LQE + + W P Y + +G H + FT+
Sbjct: 136 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 195
Query: 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEK------GESNG 257
V + E G G SKK+AKR AA ML + TVP++ + + E D+ +G
Sbjct: 196 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDG 255
Query: 258 LKH-----THDSTFLTPQILKKIQQYH--TVFSQKTKGPLLEKLLSTRNLIDEVEDPILY 310
L++ T DS L + +KI ++ S GP ++LS
Sbjct: 256 LRNRGPGCTWDS--LRNSVGEKILSLRSCSLGSLGALGPACCRVLS-------------- 299
Query: 311 LEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALD 370
+LS+E + VS++DIEE S + Q L++L+T P TV G+ + E A+ EA RAL
Sbjct: 300 --ELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 357
Query: 371 FLQIM 375
+L+IM
Sbjct: 358 YLKIM 362
>sp|Q9Z108|STAU1_MOUSE Double-stranded RNA-binding protein Staufen homolog 1 OS=Mus
musculus GN=Stau1 PE=2 SV=1
Length = 487
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 24/212 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 94 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 149
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRK 180
K NAA++VL+QL + R ++ + + K P NP+ +L + +K
Sbjct: 150 KKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKTAPDYGQGMNPISRLAQIQQAKK 209
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEI 240
P Y GLP R F + V + EG+G +KK+AKR AA NML+ L ++
Sbjct: 210 EKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILG---FKV 266
Query: 241 PEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
P+ + + + E +K D TF P
Sbjct: 267 PQAQPAKPALKSEEKTPVKKPGDGRKVTFFEP 298
>sp|D2GVP7|STAU1_AILME Double-stranded RNA-binding protein Staufen homolog 1 OS=Ailuropoda
melanoleuca GN=STAU1 PE=3 SV=1
Length = 580
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 189 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 244
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L R ++ + +++ +++ NP+ +L +
Sbjct: 245 KKNAAIAVLEELKKLPPLPTFERVKPRIKKKTKSIVRLQGSTDCSQGMNPISRLAQIQQA 304
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 305 KKEKEPEYLLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 361
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 362 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 395
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 61/254 (24%)
Query: 36 SPSRVLFDNNEIKQIPKVS----TNNLPLEEAAR-LEVMRLNTGDRTPVSLMQE------ 84
S S++L N + P +S T++LP E A R ++ L + TP S E
Sbjct: 16 SGSQILSKNQSLLSQPLMSIPSTTSSLPSENAGRPIQNSALPSASLTPTSAAAESITPTV 75
Query: 85 ----LLSRRGTAPKYELI------------QIEGAINEPIFKYRIS---LTSESRLYVAI 125
L + G P Y+ + + G P + Y L + L V
Sbjct: 76 ELNALCMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGG 135
Query: 126 ----GSGKSKKEAKHNAAKSVL------------------DQLIGRDDEKLMCQKENLFK 163
G GK+++ AKH+AA L +Q+ GR+ E +ENL K
Sbjct: 136 QQFNGKGKTRQAAKHDAAAKALRTLQSEPLPERPEGRRPGEQVNGRESE-----EENLNK 190
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
E + Q+ E + R P +E +G PH + F V + EG GKSKKI+K+
Sbjct: 191 SE---ISQVFEIALKRNL-PVNFEVARESGPPHMKSFVTRVSVGEFVGEGEGKSKKISKK 246
Query: 224 EAALNMLKFLETVP 237
AA+ +L+ L+ +P
Sbjct: 247 NAAIAVLEELKKLP 260
>sp|O95793|STAU1_HUMAN Double-stranded RNA-binding protein Staufen homolog 1 OS=Homo
sapiens GN=STAU1 PE=1 SV=2
Length = 577
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 182 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGE----FVGEGEGKSKKIS 237
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + + + K + NP+ +L +
Sbjct: 238 KKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQA 297
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 298 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG---F 354
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K D TF P
Sbjct: 355 KVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEP 388
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLD-----------QLIGRDDEKLM 155
P Y++ L+ + + G GK+++ AKH+AA L ++ GR+ E
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESE--- 177
Query: 156 CQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
+ENL K E + Q+ E + R P +E +G PH + F V + EG G
Sbjct: 178 --EENLNKSE---ISQVFEIALKRNL-PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEG 231
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 232 KSKKISKKNAAIAVLEELKKLP 253
>sp|Q8CJ67|STAU2_MOUSE Double-stranded RNA-binding protein Staufen homolog 2 OS=Mus
musculus GN=Stau2 PE=1 SV=1
Length = 570
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 27/235 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKT 286
++ P K GE+ G G ++T L+P + ++++ H V S T
Sbjct: 381 LQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTT 435
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 30/209 (14%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TPV L+ EL P+Y+L+ G + +F ++SL ++ + + GS K
Sbjct: 3 NPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQT--WESEGSS-IK 59
Query: 132 KEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEET 191
K + A K++ + + + +K N P +L M R P +Y +
Sbjct: 60 KAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGE-PAIYRPLDP 118
Query: 192 TGLPHER-------------------MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKF 232
P+ R +F V V + G GK+++ A+ AA+ L+
Sbjct: 119 KPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQA 178
Query: 233 LETVPIEIPEK-----KQGEDVDEKGESN 256
L+ P IPEK + G+++D+ ++N
Sbjct: 179 LQNEP--IPEKSPQNGESGKEMDDDKDAN 205
>sp|Q68SB1|STAU2_RAT Double-stranded RNA-binding protein Staufen homolog 2 OS=Rattus
norvegicus GN=Stau2 PE=1 SV=1
Length = 571
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + RK
Sbjct: 261 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 30/209 (14%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ G + +F ++SL ++ + + GS K
Sbjct: 3 NPKEKTPMCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQT--WESEGS-SIK 59
Query: 132 KEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEET 191
K + A K++ + + + +K N P +L M R P +Y +
Sbjct: 60 KAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGE-PAIYRPLDP 118
Query: 192 TGLPHER-------------------MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKF 232
P+ R +F V V + G GK+++ A+ AA+ L+
Sbjct: 119 KPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQA 178
Query: 233 LETVPIEIPEK-----KQGEDVDEKGESN 256
L+ P IPEK + G+++D+ ++N
Sbjct: 179 LQNEP--IPEKSPQNGESGKEMDDDKDAN 205
>sp|Q9NUL3|STAU2_HUMAN Double-stranded RNA-binding protein Staufen homolog 2 OS=Homo
sapiens GN=STAU2 PE=1 SV=1
Length = 570
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ + A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP--------------NPVGQLQEACMTRK 180
K AA +VL +L ++ + + FK P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA M L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
G GK+++ A+HNAA L L + K M ++ K E + + E
Sbjct: 158 FGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSE---ISLVFE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AA +L+ L+
Sbjct: 215 IALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELK 273
Query: 235 TVP 237
+P
Sbjct: 274 KLP 276
>sp|Q7ZW47|STAU2_DANRE Double-stranded RNA-binding protein Staufen homolog 2 OS=Danio
rerio GN=stau2 PE=2 SV=2
Length = 606
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++ +SL+ E+ +R +E+++ G + F R+++ + A G G SKK +
Sbjct: 205 SKSEISLVYEIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGE----FSAEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRK 180
K AA S+L +L + + + + + K P NP+ +L + +K
Sbjct: 261 KKRAALSILQELKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETVP 237
P Y G+P R F + V G G +KK+AKR AA M L + + P
Sbjct: 321 EKEPEYMLLSERGMPRRREFIMQVKVGTEVTTGTGPNKKVAKRNAAEAMLLQLGYKASTP 380
Query: 238 IE-IPEKKQGEDVDEKG 253
++ PEK +D KG
Sbjct: 381 LQNTPEK-----MDNKG 392
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 125 IGSGKSKKEAKHNAAKSVLDQLIGR----------DDEKLMCQKENLFKVEPNPVGQLQE 174
IG G++++ A+HNAA L L +++K + + K E + + E
Sbjct: 158 IGEGRTRQAARHNAAMKALQALKNEPIPERPPQCSEEKKETEENSDASKSE---ISLVYE 214
Query: 175 ACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
+ R P +E + +G PH + F V + EG G SKK++K+ AAL++L+ L+
Sbjct: 215 IALKRNLPV-NFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAALSILQELK 273
Query: 235 TVPI 238
+P+
Sbjct: 274 KLPV 277
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 27/192 (14%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ +G + IF ++ L ++ V G S
Sbjct: 3 NPKEKTPMCLVNELARFNRIQPQYKLLNEKGPAHAKIFTVQLCLGNQ----VWESEGSSI 58
Query: 132 KEAKHNAAKSVLDQLIGRDDEKLMCQKE-NLFKVEPNPVGQLQEACMTRKWPPPVYETEE 190
K+A+H+ A L + + + N P +L M R P +Y +
Sbjct: 59 KKAQHSTATKALAESSLPRPPPRSPKADSNSNPGSITPTVELNGLAMKRGE-PAIYRPLD 117
Query: 191 TTGLPHER-------------------MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLK 231
+P+ R +F V V + G G++++ A+ AA+ L+
Sbjct: 118 PKPIPNYRANYNFRGMFNQRYHYPVPKVFYVQLTVGNNEFIGEGRTRQAARHNAAMKALQ 177
Query: 232 FLETVPIEIPEK 243
L+ P IPE+
Sbjct: 178 ALKNEP--IPER 187
>sp|B0VCU0|RNC_ACIBY Ribonuclease 3 OS=Acinetobacter baumannii (strain AYE) GN=rnc PE=3
SV=1
Length = 230
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>sp|A3M7P2|RNC_ACIBT Ribonuclease 3 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC
KC 755) GN=rnc PE=3 SV=2
Length = 230
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>sp|B7GYT0|RNC_ACIB3 Ribonuclease 3 OS=Acinetobacter baumannii (strain AB307-0294)
GN=rnc PE=3 SV=2
Length = 230
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>sp|B0VTM5|RNC_ACIBS Ribonuclease 3 OS=Acinetobacter baumannii (strain SDF) GN=rnc PE=3
SV=1
Length = 230
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>sp|A7NGC5|RNC_ROSCS Ribonuclease 3 OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=rnc PE=3 SV=1
Length = 234
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 78 PVSLMQELLSR----RGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
PV +L +R RG P+Y +I+ G ++P F + ES + G G SK+
Sbjct: 161 PVDYKSKLQARIQAERGITPRYRMIERSGPEHQPEFTFEALAGDES---LGTGRGASKQA 217
Query: 134 AKHNAAKSVLDQLIGRD 150
A+ +AA+ LD+L GRD
Sbjct: 218 AEQDAARDALDRLGGRD 234
>sp|Q87C06|RNC_XYLFT Ribonuclease 3 OS=Xylella fastidiosa (strain Temecula1 / ATCC
700964) GN=rnc PE=3 SV=1
Length = 227
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKI 220
K E +P +LQE R+W PVYE +G PH + F V + K EG G S+++
Sbjct: 151 KPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRL 210
Query: 221 AKREAALNMLKFLET 235
A+++AA + + L++
Sbjct: 211 AEQDAASHAIDQLDS 225
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFK-YRISL 115
LP E A L + + ++ P + +QE L +R+ + P YELI G +P K +R+S
Sbjct: 137 LPWFETA-LTALPVGKPEKDPKTRLQEWLQARQWSLPVYELIFESG---DPHTKHFRVSC 192
Query: 116 TSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146
T G G S++ A+ +AA +DQL
Sbjct: 193 TLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223
>sp|B2I604|RNC_XYLF2 Ribonuclease 3 OS=Xylella fastidiosa (strain M23) GN=rnc PE=3 SV=1
Length = 227
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKI 220
K E +P +LQE R+W PVYE +G PH + F V + K EG G S+++
Sbjct: 151 KPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRL 210
Query: 221 AKREAALNMLKFLET 235
A+++AA + + L++
Sbjct: 211 AEQDAASHAIDQLDS 225
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFK-YRISL 115
LP E A L + + ++ P + +QE L +R+ + P YELI G +P K +R+S
Sbjct: 137 LPWFETA-LTALPVGKPEKDPKTRLQEWLQARQWSLPVYELIFESG---DPHTKHFRVSC 192
Query: 116 TSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146
T G G S++ A+ +AA +DQL
Sbjct: 193 TLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223
>sp|B0U3D8|RNC_XYLFM Ribonuclease 3 OS=Xylella fastidiosa (strain M12) GN=rnc PE=3 SV=1
Length = 227
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKI 220
K E +P +LQE R+W PVYE +G PH + F V + K EG G S+++
Sbjct: 151 KPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRL 210
Query: 221 AKREAALNMLKFLET 235
A+++AA + + L++
Sbjct: 211 AEQDAASHAINQLDS 225
>sp|Q9PB98|RNC_XYLFA Ribonuclease 3 OS=Xylella fastidiosa (strain 9a5c) GN=rnc PE=3 SV=2
Length = 227
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKI 220
K E +P +LQE R+W PVYE +G PH + F V + K EG G S+++
Sbjct: 151 KPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRL 210
Query: 221 AKREAALNMLKFLET 235
A+++AA + + L++
Sbjct: 211 AEQDAASHAIDQLDS 225
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFK-YRISL 115
LP E A L + + ++ P + +QE L +R+ + P YELI G +P K +R+S
Sbjct: 137 LPWFETA-LTALPVGKPEKDPKTRLQEWLQARQWSLPVYELIFESG---DPHTKHFRVSC 192
Query: 116 TSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146
T G G S++ A+ +AA +DQL
Sbjct: 193 TLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223
>sp|Q39T82|RNC_GEOMG Ribonuclease 3 OS=Geobacter metallireducens (strain GS-15 / ATCC
53774 / DSM 7210) GN=rnc PE=3 SV=1
Length = 246
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNM 229
+ QE TR P YE T G PH+R FTV A V + EG G+SKK A++ AA +
Sbjct: 177 EFQEMVQTRFGTAPTYELIATDGPPHDRRFTVIAMVAGKRMGEGAGRSKKEAEQAAARQV 236
Query: 230 L 230
L
Sbjct: 237 L 237
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 82 MQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
QE++ +R GTAP YELI +G ++ F I++ + R+ G+G+SKKEA+ AA+
Sbjct: 178 FQEMVQTRFGTAPTYELIATDGPPHDRRFTV-IAMVAGKRM--GEGAGRSKKEAEQAAAR 234
Query: 141 SVLDQL 146
VL +
Sbjct: 235 QVLARF 240
>sp|F0KKL2|RNC_ACICP Ribonuclease 3 OS=Acinetobacter calcoaceticus (strain PHEA-2)
GN=rnc PE=3 SV=2
Length = 230
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G PH+ C + K G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>sp|Q608M7|RNC_METCA Ribonuclease 3 OS=Methylococcus capsulatus (strain ATCC 33009 /
NCIMB 11132 / Bath) GN=rnc PE=3 SV=1
Length = 230
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIG---RDDEKLMCQKENLFKVE----------- 165
Y+ +GSG KS + + L+ ++G RD C+ L E
Sbjct: 92 YLILGSGELKSGGYRRDSILSDALEAILGAVLRDQGIDACRALILTLFERPLSALSLDDW 151
Query: 166 -PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+P +LQE R P PVY + +GLPH++ F V V + E G G S+K A+
Sbjct: 152 KKDPKTRLQELMQGRGLPLPVYTLIDQSGLPHDQHFRVRCEVPLAVEPCVGEGSSRKKAE 211
Query: 223 REAALNMLKFL 233
++AA NML L
Sbjct: 212 QQAAENMLSRL 222
>sp|B8F3C7|RNC_HAEPS Ribonuclease 3 OS=Haemophilus parasuis serovar 5 (strain SH0165)
GN=rnc PE=3 SV=1
Length = 223
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 139 AKSVLDQLIGRDDEKLMCQKENLF------KVEPNPVGQLQEACMTRKWPPPVYETEETT 192
A LD I R E++ C + L + + +P +LQE RK P P YE +
Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177
Query: 193 GLPHERMFTVCAYVNVYKE--EGMGKSKKIAKREAALNMLKFL 233
G H + F V V E G G S++ A+++AAL ++K L
Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVL 220
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 69 MRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
M+L + P + +QE L R+ P YE+I I+G + FK +S E + IG+
Sbjct: 144 MQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIKGEAHNQTFK--VSCKVEKVDEIFIGN 201
Query: 128 GKSKKEAKHNAAKSVLDQL 146
G S+++A+ +AA V+ L
Sbjct: 202 GTSRRKAEQDAALQVIKVL 220
>sp|Q9FKF0|RTL3_ARATH Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana GN=RTL3 PE=2
SV=1
Length = 957
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 18/157 (11%)
Query: 153 KLMCQKENLFKVEP-NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE 211
K M ++ VEP N G+L E C KWP P++ +E G +E F + +
Sbjct: 292 KQMVVDKDSLHVEPVNGRGELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPNI 351
Query: 212 EG-------MGKSKKIAKREAALNMLKFLET--VPIEIPEKKQGEDVDEKGESNGLKHTH 262
EG + KK A+ A +M++ LE+ V + I ++ + +DEK
Sbjct: 352 EGTFHMKGDIKSKKKQAENSLAYHMIRALESSLVSLVISNLQKPKSLDEKNNPLLFSSEM 411
Query: 263 DSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN 299
DS+ + ++KI Y F KT LL++LL+ N
Sbjct: 412 DSSV---EAVEKILNYS--FVNKT---LLKELLTHNN 440
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 164 VEP-NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGK------ 216
VEP + G+L E C KWP P++ EE G +E+ + + EG
Sbjct: 833 VEPEDEKGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAK 892
Query: 217 -SKKIAKREAALNMLKFLET 235
+KK A+ +A +M++ LE+
Sbjct: 893 PTKKEAENSSADHMIRALES 912
>sp|A1SSM8|RNC_PSYIN Ribonuclease 3 OS=Psychromonas ingrahamii (strain 37) GN=rnc PE=3
SV=1
Length = 228
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEEGMGKSKKIAKR 223
+ +P +LQE +RK P P+YE E G H + FT+ C+ + +G G S++ A++
Sbjct: 155 QKDPKTRLQEHLQSRKQPLPIYEVLEIKGEAHNQRFTMSCSIDGLKSVQGQGTSRRKAEQ 214
Query: 224 EAALNMLKFL 233
AA ML L
Sbjct: 215 IAANKMLDSL 224
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 64 ARLEVMRLNTGDRTPVSLMQE-LLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLY 122
+RL + + P + +QE L SR+ P YE+++I+G + F S+ L
Sbjct: 144 SRLNTIEPGISQKDPKTRLQEHLQSRKQPLPIYEVLEIKGEAHNQRFTMSCSIDG---LK 200
Query: 123 VAIGSGKSKKEAKHNAAKSVLDQLIG 148
G G S+++A+ AA +LD L G
Sbjct: 201 SVQGQGTSRRKAEQIAANKMLDSLSG 226
>sp|P55265|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens
GN=ADAR PE=1 SV=4
Length = 1226
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++PV+ + E + + G + ++ L+ EG +EP F+Y +++ +++ V S SKK AK
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV---SAPSKKVAK 669
Query: 136 HNAAKSVLDQLIGRDDEKLMCQKE----------NLFKVEP---------------NPVG 170
AA+ + L G + + NL + P NPVG
Sbjct: 670 QMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVG 729
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNM 229
L E + + ++ + +G PHE F A V + SKK K+EAA
Sbjct: 730 GLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
Query: 230 LKFL 233
L+ L
Sbjct: 789 LRVL 792
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
V LNT PV + E G A +++L+ G +EP F Y+ + R + A+
Sbjct: 720 VRYLNT---NPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG--RWFPAV-C 773
Query: 128 GKSKKEAKHNAAKSVLDQLIGRDDE 152
SKK+ K AA + L LIG +++
Sbjct: 774 AHSKKQGKQEAADAALRVLIGENEK 798
>sp|Q47WP5|RNC_COLP3 Ribonuclease 3 OS=Colwellia psychrerythraea (strain 34H / ATCC
BAA-681) GN=rnc PE=3 SV=1
Length = 266
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+ +P +LQE RK P P YE +TTG H + FTV +V E G S++ A+
Sbjct: 155 QKDPKTRLQEFLQGRKIPLPTYEVIDTTGQSHNQEFTVRCQTSVISEVVIAKGTSRRKAE 214
Query: 223 REAALNMLKFLE 234
+EAA +L +E
Sbjct: 215 QEAAQQILALIE 226
>sp|Q8D305|RNC_WIGBR Ribonuclease 3 OS=Wigglesworthia glossinidia brevipalpis GN=rnc
PE=3 SV=1
Length = 226
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 19/124 (15%)
Query: 122 YVAIGSGKSKKEAKH------NAAKSV-----LDQLIGRDDEKLMCQKEN------LFKV 164
Y+ +G G+ K K+ NA +++ LD I + E ++ +N L +
Sbjct: 93 YLILGIGEVKTGGKNRDSILSNAMEAIIGGIFLDSNINKTHEIVISWYKNRLYSMSLKNL 152
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+ +P +LQE K+ P Y + TG H + FT+C +++ K+ G GK+++ A+
Sbjct: 153 KKDPKTRLQEYLQGNKFSLPQYYIKNITGESHNQEFTICCFIDDLKKSVIGYGKTRRKAE 212
Query: 223 REAA 226
+ AA
Sbjct: 213 QSAA 216
>sp|Q6DD04|ILF3B_XENLA Interleukin enhancer-binding factor 3-B OS=Xenopus laevis GN=ilf3-b
PE=1 SV=2
Length = 898
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 49/207 (23%)
Query: 94 KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL---IGRD 150
+Y+LI G ++ PIF +S+ + + + A SG SKK AK + A VL + G D
Sbjct: 418 QYKLISQTGPVHAPIFT--MSVEVDDKTFEA--SGPSKKTAKLHVAVKVLQDMGLPTGID 473
Query: 151 DEKLMCQKENLFKVEPNPV-----------------------GQLQEACMTRKWPPPV-- 185
+ ++E++ + E PV G+ Q +TR PV
Sbjct: 474 E-----KEESVDESEEKPVLQTPSQTADSEQADSSAGDQSESGKQQGPILTRHGKNPVME 528
Query: 186 ---------YETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL--- 233
YE TG H++ F + V+ K +G G +KK+AK AAL+ L+ L
Sbjct: 529 LNEKRRGLKYELISETGGSHDKRFIMEVEVDGVKFQGNGSNKKVAKAYAALSALEKLFPD 588
Query: 234 ETVPIEIPEKKQGEDVDEKGESNGLKH 260
T E P+KK+ + G KH
Sbjct: 589 YTTYTEAPKKKRPPMMPRGGPKFAGKH 615
>sp|Q6F9C2|RNC_ACIAD Ribonuclease 3 OS=Acinetobacter sp. (strain ADP1) GN=rnc PE=3 SV=1
Length = 230
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREA 225
+P +LQE RK P PVYE + G P++ VC + + G G S++ A++ A
Sbjct: 161 DPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVVCLVEGLPRVMGEGSSRRFAEQTA 220
Query: 226 ALNMLKFLE 234
A +LK LE
Sbjct: 221 AAEILKLLE 229
>sp|Q7VL75|RNC_HAEDU Ribonuclease 3 OS=Haemophilus ducreyi (strain 35000HP / ATCC
700724) GN=rnc PE=3 SV=1
Length = 222
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 66 LEVMRLNTGDRTPVSLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVA 124
L+ M+ + P + +QE L RR P+YE++ I+G + IFK +S E+ +
Sbjct: 141 LDEMKPGDAQKDPKTRLQEFLQGRRLKLPEYEVLDIKGEAHNQIFK--VSCKIETFTDIF 198
Query: 125 IGSGKSKKEAKHNAAKSVLDQL 146
IG G S+++A+ NAA+ +L +L
Sbjct: 199 IGIGTSRRKAEQNAAEQILLKL 220
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--EGMGKSKKIA 221
+ +P +LQE R+ P YE + G H ++F V + + + G+G S++ A
Sbjct: 149 AQKDPKTRLQEFLQGRRLKLPEYEVLDIKGEAHNQIFKVSCKIETFTDIFIGIGTSRRKA 208
Query: 222 KREAALNML 230
++ AA +L
Sbjct: 209 EQNAAEQIL 217
>sp|B2GD42|RNC_LACF3 Ribonuclease 3 OS=Lactobacillus fermentum (strain NBRC 3956 / LMG
18251) GN=rnc PE=3 SV=1
Length = 232
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 82 MQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAK 140
+QE L R G A +Y+L+ G N+P+F+ +++ + VA G G SKK A+ AAK
Sbjct: 166 LQEFLQRNGDVAIEYDLLSEGGTENDPVFEVEVTVDGKK---VATGQGSSKKHAEMEAAK 222
Query: 141 SVLDQL 146
L++L
Sbjct: 223 HALEKL 228
>sp|P59476|RNC_BUCBP Ribonuclease 3 OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=rnc PE=3 SV=1
Length = 226
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 122 YVAIGSG--KSKKEAKHNAAKSVLDQLIG--------RDDEKLMCQ--KENLFKVEP--- 166
Y+ +G G KS + + + ++ LIG + EKL+ + K L + P
Sbjct: 93 YLQLGQGELKSGGFRRESILANTVEALIGSIFLDSNLKTIEKLILKWYKNRLKAINPSDT 152
Query: 167 --NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE--GMGKSKKIAK 222
+P +LQE ++ P P Y E+ G H ++FT+ ++ E+ G+G S++ A+
Sbjct: 153 QKDPKTRLQEYLQSKHLPLPSYLVEQVYGEAHNQLFTIYCEISGINEKTIGIGSSRRKAE 212
Query: 223 REAALNML 230
+EAA N L
Sbjct: 213 QEAAQNAL 220
>sp|Q7VRR0|RNC_BLOFL Ribonuclease 3 OS=Blochmannia floridanus GN=rnc PE=3 SV=1
Length = 232
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV--YKEEGMGKSKKIAK 222
+ +P +LQE P P+Y + G H+++F + V+ Y G G S++ A+
Sbjct: 156 QKDPKTRLQEYLQHHHLPLPIYCINQVQGQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAE 215
Query: 223 REAALNMLKFL 233
++AA N LKFL
Sbjct: 216 QDAAENALKFL 226
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 65 RLEVMRLNTGDRTPVSLMQELLSRRGT-APKYELIQIEGAINEPIFKYRISLTSESRLYV 123
RL + L + P + +QE L P Y + Q++G ++ IF ++S Y
Sbjct: 146 RLNKIDLEDKQKDPKTRLQEYLQHHHLPLPIYCINQVQGQAHDQIFIMNCQVSSLK--YS 203
Query: 124 AIGSGKSKKEAKHNAAKSVLDQLI 147
+G G S+++A+ +AA++ L LI
Sbjct: 204 VMGRGSSRRKAEQDAAENALKFLI 227
>sp|Q91550|ILF3A_XENLA Interleukin enhancer-binding factor 3-A OS=Xenopus laevis GN=ilf3-a
PE=1 SV=2
Length = 897
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 92/225 (40%), Gaps = 51/225 (22%)
Query: 78 PVSLMQELLSRRGTAP--KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
P +M L+ P +Y+LI G ++ P+F +S+ + + + A SG SKK AK
Sbjct: 400 PPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFT--MSVEVDDKTFEA--SGPSKKTAK 455
Query: 136 HNAAKSVLDQLI----------GRD--------------------DEKLMCQKEN----- 160
+ A VL + G D D + Q E+
Sbjct: 456 LHVAVKVLQDMGLPTGMEEKEEGTDESEQKPVVQTPAQPDDSAEVDSAALDQAESAKQQG 515
Query: 161 --LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
L K NPV +L E K YE TG H++ F + V+ K +G G +K
Sbjct: 516 PILTKHGKNPVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGVKFQGSGSNK 570
Query: 219 KIAKREAALNMLKFL---ETVPIEIPEKKQGEDVDEKGESNGLKH 260
K+AK AAL+ L+ L T+ E P+KK+ + G KH
Sbjct: 571 KVAKAYAALSALEKLFPDYTMYTEAPKKKRPPMMPRGGPKFAGKH 615
>sp|B2A2N1|RNC_NATTJ Ribonuclease 3 OS=Natranaerobius thermophilus (strain ATCC BAA-1301
/ DSM 18059 / JW/NM-WN-LF) GN=rnc PE=3 SV=1
Length = 230
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 80 SLMQELL-SRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QEL+ R G PKY++++ G ++ F + + +E V GSGKSKKEA+ NA
Sbjct: 164 TMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNE---VVGRGSGKSKKEAEQNA 220
Query: 139 AKSVLDQL 146
A +L
Sbjct: 221 AHFAFQKL 228
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 158 KENLFKVEPNPVGQ----LQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE-- 211
K+ L ++ +G +QE R PP Y+ + +G H++ F A V + E
Sbjct: 148 KDQLSHIDNQRIGDYKTMIQELVQDRYGDPPKYQIVKESGPDHDKSF--VAEVQINNEVV 205
Query: 212 -EGMGKSKKIAKREAA 226
G GKSKK A++ AA
Sbjct: 206 GRGSGKSKKEAEQNAA 221
>sp|Q5M7M7|STAU2_XENTR Double-stranded RNA-binding protein Staufen homolog 2 OS=Xenopus
tropicalis GN=stau2 PE=2 SV=1
Length = 624
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 21/202 (10%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ +SL+ E+ +R + +E+I+ G + F R+++ + A G G SKK
Sbjct: 222 ANKSEISLVFEISLKRNLSLSFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSKKL 277
Query: 134 AKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTR 179
AK AA +VL +L I + + + +N+ K P NP+ +L + +
Sbjct: 278 AKRRAAAAVLQELRKLPPLPVIEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAK 337
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNM---LKFLETV 236
K P Y G+ R F + V G G +KK AKR AA M L + +
Sbjct: 338 KEKEPEYVLLSERGIQRRREFVMQVKVGEETATGTGPNKKTAKRNAAEAMLLQLGYKASS 397
Query: 237 PIEIPEKKQGEDVDEKGESNGL 258
P+ K+GE+ D +++G+
Sbjct: 398 PVVEKTGKRGENPDWDEQNSGI 419
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 45/210 (21%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ G + +F +++L ++ S
Sbjct: 3 NPKEKTPMCLVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTWQ----AESTSI 58
Query: 132 KEAKHNAA-----KSVLDQLIGRDDEKLMCQKENLFKVEPN--------------PVGQL 172
K+A+H AA ++ L + R + M ++ N P +L
Sbjct: 59 KKAQHAAASLALSETTLPKPAARQTKNHMNNNPEAAELHGNTFTSSRHSAKGSITPTVEL 118
Query: 173 QEACMTRKWPPPVYETEETTGLPHERM-------------------FTVCAYVNVYKEEG 213
M R+ P +Y + + LP++R F V V + G
Sbjct: 119 NGLAM-RRGEPAIYRSLDPKPLPNQRANYNYRGMYHQRYLCPMLKTFYVQLTVGNSEFYG 177
Query: 214 MGKSKKIAKREAALNMLKFLETVPIEIPEK 243
GK+++ A+ AAL L L P IPE+
Sbjct: 178 EGKTRQAARHNAALKALHALRNEP--IPER 205
>sp|Q91FI4|340R_IIV6 DRBM domain-containing protein 340R OS=Invertebrate iridescent
virus 6 GN=IIV6-340R PE=4 SV=1
Length = 173
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 152 EKLMCQK--ENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY 209
E+++C K +N+ + N +G L E C K+ PP Y T G H F + + Y
Sbjct: 13 EEILCTKKEQNIDMEKFNSIGFLNEFCHKNKYKPPSYTTLNQNGPDHSPTFNIECRIVDY 72
Query: 210 KEE----GMGKSKKIAKREAALNMLKFLETVPIEIPEK 243
K G G S K AK+ AA +K L + + K
Sbjct: 73 KPNGKFIGSGLSMKEAKKNAAFKTIKELNLLTLNTENK 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,925,969
Number of Sequences: 539616
Number of extensions: 5998736
Number of successful extensions: 14218
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 347
Number of HSP's that attempted gapping in prelim test: 13595
Number of HSP's gapped (non-prelim): 834
length of query: 377
length of database: 191,569,459
effective HSP length: 119
effective length of query: 258
effective length of database: 127,355,155
effective search space: 32857629990
effective search space used: 32857629990
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)