Query psy5350
Match_columns 377
No_of_seqs 332 out of 2544
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 00:21:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3732|consensus 100.0 3E-43 6.5E-48 327.3 17.2 281 76-377 38-337 (339)
2 KOG3732|consensus 100.0 2.9E-30 6.3E-35 240.6 17.8 206 128-373 2-210 (339)
3 COG0571 Rnc dsRNA-specific rib 100.0 2.2E-29 4.8E-34 230.1 13.4 141 3-150 79-233 (235)
4 PRK12371 ribonuclease III; Rev 100.0 5.1E-28 1.1E-32 223.1 13.8 139 3-148 81-231 (235)
5 PRK14718 ribonuclease III; Pro 99.9 1.5E-27 3.3E-32 231.2 13.6 141 3-149 69-223 (467)
6 PRK12372 ribonuclease III; Rev 99.9 8.2E-27 1.8E-31 225.1 13.9 141 3-149 69-223 (413)
7 PRK00102 rnc ribonuclease III; 99.9 1.2E-23 2.6E-28 194.3 13.0 139 3-148 76-228 (229)
8 TIGR02191 RNaseIII ribonucleas 99.9 1.1E-22 2.4E-27 186.7 12.8 137 3-146 70-220 (220)
9 KOG1817|consensus 99.8 1.8E-18 3.8E-23 165.4 10.9 139 2-148 345-503 (533)
10 PHA02701 ORF020 dsRNA-binding 99.7 1.5E-16 3.2E-21 137.9 10.3 73 74-149 106-178 (183)
11 cd00048 DSRM Double-stranded R 99.6 2.7E-15 5.8E-20 111.2 9.8 67 77-146 1-68 (68)
12 cd00048 DSRM Double-stranded R 99.6 2.5E-15 5.4E-20 111.3 9.5 67 167-233 1-68 (68)
13 smart00358 DSRM Double-strande 99.6 2.3E-15 5.1E-20 111.4 9.3 66 78-146 1-66 (67)
14 PHA03103 double-strand RNA-bin 99.6 2.3E-15 5E-20 131.4 9.9 74 72-149 105-178 (183)
15 smart00358 DSRM Double-strande 99.6 1.3E-14 2.9E-19 107.3 8.9 65 168-233 1-66 (67)
16 PHA02701 ORF020 dsRNA-binding 99.6 1.3E-14 2.9E-19 125.8 10.0 73 163-236 105-178 (183)
17 PF00035 dsrm: Double-stranded 99.6 2.9E-14 6.3E-19 105.7 9.9 66 78-146 1-67 (67)
18 PHA03103 double-strand RNA-bin 99.5 7.9E-14 1.7E-18 121.9 9.7 74 161-236 104-178 (183)
19 PF00035 dsrm: Double-stranded 99.5 2.2E-13 4.8E-18 100.9 9.0 65 168-233 1-67 (67)
20 PRK12371 ribonuclease III; Rev 99.4 5.5E-13 1.2E-17 123.2 10.1 72 164-235 159-231 (235)
21 COG0571 Rnc dsRNA-specific rib 99.4 1.7E-12 3.6E-17 119.2 12.5 75 163-237 158-233 (235)
22 PF14709 DND1_DSRM: double str 99.4 5.7E-13 1.2E-17 102.3 7.4 69 166-234 1-80 (80)
23 PRK14718 ribonuclease III; Pro 99.4 1.8E-12 3.9E-17 126.8 9.7 73 164-236 149-223 (467)
24 PRK12372 ribonuclease III; Rev 99.3 6E-12 1.3E-16 122.4 10.0 74 164-237 149-224 (413)
25 KOG2777|consensus 99.3 1.7E-11 3.6E-16 122.9 10.0 131 93-237 10-156 (542)
26 PRK00102 rnc ribonuclease III; 99.3 2.3E-11 5E-16 112.3 10.0 73 163-235 155-228 (229)
27 PF14709 DND1_DSRM: double str 99.2 3.8E-11 8.2E-16 92.2 7.8 72 76-147 1-80 (80)
28 TIGR02191 RNaseIII ribonucleas 99.2 6.7E-11 1.5E-15 108.5 9.7 70 164-233 150-220 (220)
29 KOG4334|consensus 99.1 3.6E-10 7.7E-15 110.1 10.7 155 75-236 374-559 (650)
30 KOG2777|consensus 99.0 1.6E-09 3.4E-14 108.8 9.9 147 182-374 8-154 (542)
31 KOG3769|consensus 98.8 3.2E-09 6.8E-14 98.2 4.8 136 7-150 155-305 (333)
32 KOG4334|consensus 98.7 2.1E-07 4.6E-12 91.1 12.3 179 163-372 372-556 (650)
33 PF14622 Ribonucleas_3_3: Ribo 98.6 7.2E-09 1.6E-13 87.0 0.5 60 3-66 56-119 (128)
34 smart00535 RIBOc Ribonuclease 98.1 1.4E-06 3E-11 72.9 2.6 60 3-66 54-117 (129)
35 KOG0921|consensus 98.0 8.5E-06 1.8E-10 85.6 6.5 155 77-236 2-241 (1282)
36 KOG1817|consensus 98.0 2E-05 4.3E-10 76.7 8.1 75 162-236 423-504 (533)
37 KOG3792|consensus 98.0 1E-05 2.2E-10 82.9 5.9 151 75-235 369-571 (816)
38 cd00593 RIBOc RIBOc. Ribonucle 97.9 5.3E-06 1.2E-10 69.6 2.5 60 3-66 56-119 (133)
39 KOG3792|consensus 97.9 1.3E-05 2.9E-10 82.1 5.1 190 167-372 371-569 (816)
40 KOG3769|consensus 97.4 0.00022 4.9E-09 66.5 5.3 78 161-238 227-306 (333)
41 PF00636 Ribonuclease_3: Ribon 97.3 2.3E-05 5.1E-10 64.0 -2.7 53 2-55 34-113 (114)
42 PF03368 Dicer_dimer: Dicer di 96.3 0.026 5.5E-07 44.3 7.9 66 308-376 2-75 (90)
43 PF03368 Dicer_dimer: Dicer di 96.3 0.024 5.2E-07 44.4 7.6 64 169-237 2-75 (90)
44 KOG0921|consensus 96.1 0.026 5.6E-07 60.3 9.3 194 167-375 2-241 (1282)
45 PF14954 LIX1: Limb expression 94.0 0.18 4E-06 45.2 6.7 66 75-145 20-94 (252)
46 PF14954 LIX1: Limb expression 92.2 0.36 7.8E-06 43.4 5.9 74 164-237 19-100 (252)
47 KOG0701|consensus 90.8 0.2 4.4E-06 57.4 3.6 101 35-150 1496-1600(1606)
48 KOG2334|consensus 78.9 0.75 1.6E-05 45.6 0.5 69 75-149 374-443 (477)
49 KOG2334|consensus 64.7 3.1 6.8E-05 41.4 1.1 69 165-237 374-444 (477)
50 PF04694 Corona_3: Coronavirus 55.7 24 0.00053 24.4 3.9 26 340-365 29-54 (60)
51 PF06754 PhnG: Phosphonate met 48.8 1.5E+02 0.0032 25.4 8.6 67 76-145 14-100 (146)
52 COG1944 Uncharacterized conser 48.5 83 0.0018 31.5 8.0 65 307-373 19-85 (398)
53 KOG0701|consensus 42.2 26 0.00057 41.0 3.8 74 164-237 1512-1600(1606)
54 PF02169 LPP20: LPP20 lipoprot 41.7 35 0.00076 26.0 3.5 26 348-373 14-39 (92)
55 PF02169 LPP20: LPP20 lipoprot 40.5 36 0.00078 25.9 3.4 27 122-148 14-40 (92)
56 PF00333 Ribosomal_S5: Ribosom 36.3 69 0.0015 23.5 4.1 41 106-147 21-63 (67)
57 PF04098 Rad52_Rad22: Rad52/22 27.8 2.9E+02 0.0062 23.6 7.2 23 307-329 38-60 (154)
58 PF12909 DUF3832: Protein of u 26.3 2.6E+02 0.0056 21.8 5.9 31 339-372 20-50 (89)
59 COG3624 PhnG Uncharacterized e 26.1 3.9E+02 0.0085 22.7 7.3 59 80-143 21-103 (151)
60 PRK04044 rps5p 30S ribosomal p 24.3 1.7E+02 0.0037 26.6 5.3 41 106-147 69-111 (211)
61 CHL00138 rps5 ribosomal protei 22.2 2.6E+02 0.0057 23.8 5.8 41 106-147 43-85 (143)
62 PF09003 Phage_integ_N: Bacter 22.1 94 0.002 23.4 2.7 23 349-371 38-60 (75)
63 PF10613 Lig_chan-Glu_bd: Liga 22.1 1.2E+02 0.0026 22.1 3.2 22 307-328 22-43 (65)
64 PF14657 Integrase_AP2: AP2-li 21.6 2.5E+02 0.0054 18.5 4.8 22 124-146 20-41 (46)
65 TIGR01021 rpsE_bact ribosomal 21.0 2.7E+02 0.0058 24.0 5.7 41 106-147 21-63 (154)
66 CHL00138 rps5 ribosomal protei 20.6 2.4E+02 0.0053 24.0 5.2 43 195-237 41-88 (143)
67 PRK00550 rpsE 30S ribosomal pr 20.1 2.8E+02 0.0061 24.3 5.7 41 106-147 32-74 (168)
68 COG0161 BioA Adenosylmethionin 20.1 93 0.002 31.7 3.0 53 303-356 233-287 (449)
No 1
>KOG3732|consensus
Probab=100.00 E-value=3e-43 Score=327.27 Aligned_cols=281 Identities=33% Similarity=0.450 Sum_probs=222.0
Q ss_pred CChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCCCcccc
Q psy5350 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLM 155 (377)
Q Consensus 76 ~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~~~~~~ 155 (377)
++|+|.|||+|.+++..|.|++++++||.|++.|+++|.|++ +.+.|.|+|||.|+|+||..+|..|+..++....
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg~----~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v 113 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVGE----ITATGEGKSKKLAKHRAAEALLKELKKLPPLANV 113 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEee----eEEecCCCchhHHHHHHHHHHHHHHhcCCCcccc
Confidence 999999999999999999999999999999999999999997 8999999999999999999999999987653221
Q ss_pred c------------------cccCCCCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCC
Q psy5350 156 C------------------QKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKS 217 (377)
Q Consensus 156 ~------------------~~~~~~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~s 217 (377)
. ..++++....|||++|+||||+++|+.|.|+++.+.|++|.+.|+++|+|.+++.+|.|+|
T Consensus 114 ~k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~~GkG~s 193 (339)
T KOG3732|consen 114 RKDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTEEGKGPS 193 (339)
T ss_pred ccCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceeeecCCch
Confidence 0 1124456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccCCCCcccccccccCCCCCCCccccchhhhhhhhhhhhccccCCCCchh-Hhhhc
Q psy5350 218 KKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLL-EKLLS 296 (377)
Q Consensus 218 KK~Ak~~AA~~~l~~L~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 296 (377)
||.||++||++||..|.-.++.... ++. .+....+...-...+.+....++-+..+. .+...
T Consensus 194 KKiAKRnAAeamLe~l~~~~~~~~p-----~~~------------~~~~~~p~~~~~~~~~~~s~~~s~~eel~~~k~~~ 256 (339)
T KOG3732|consen 194 KKIAKRNAAEAMLESLGFVKPNKTP-----ENL------------KVSLLKPASGRALGCSDKSLDNSEGEELSRLKACL 256 (339)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcCc-----ccc------------cccccccccCcCCccCccccccchhhhhhhhhhhh
Confidence 9999999999999999866542100 000 00000000000000011111111111111 00000
Q ss_pred cCCCCCCCCCHHHHHHHHHhhcCceEEEEeecccCCCCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q psy5350 297 TRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMN 376 (377)
Q Consensus 297 ~~~~~~~~~n~i~~L~el~q~~~~~~~~~~~~~~g~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L~~~~ 376 (377)
...+...+.+++..|+++.....|.+.|.++.+.+..+.++|.++.++.|..+|+|++.|-..|...||+++|+||+.|.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~e~~f~~~y~d~~~~t~sg~~~~~~e~s~~~~~~~~~s~~t~~~s~~~aa~~~L~yL~~~~ 336 (339)
T KOG3732|consen 257 KVIFNSAGLAYIKLLSEIAPENQFTVTYPDIEELTLSGQNQCLVELSTSPATVCHGSSITPPSAQSEAAHNALEYLKIMA 336 (339)
T ss_pred hhccccccccccccccccccccchheecchhHHhhhhhHHHHHHHhcCCCceeeeccCCCCCcccchhHHHHHHHHHHHh
Confidence 11233456789999999999999999999998888889999999999999999999999999999999999999999986
Q ss_pred C
Q psy5350 377 R 377 (377)
Q Consensus 377 ~ 377 (377)
.
T Consensus 337 ~ 337 (339)
T KOG3732|consen 337 G 337 (339)
T ss_pred c
Confidence 3
No 2
>KOG3732|consensus
Probab=99.97 E-value=2.9e-30 Score=240.60 Aligned_cols=206 Identities=27% Similarity=0.274 Sum_probs=160.7
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCCccccccccCCCCC-CCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEE
Q psy5350 128 GKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKV-EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV 206 (377)
Q Consensus 128 G~sKK~Ae~~AA~~aL~~L~~~~~~~~~~~~~~~~~~-~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v 206 (377)
|.+...|+|+||..||..|.....+..... .... .++|||.|||+|.+++.++ .|++++++||+|.+.|+++|+|
T Consensus 2 g~t~~~a~~daaa~al~~l~~~~~~~~~~~---~~~~g~KS~IS~l~E~~~r~~~~v-~fevl~eeGp~H~~~fv~rvtv 77 (339)
T KOG3732|consen 2 GKTMQQAKHDAAAKALQVLQNGLISEGVML---NADPGAKSPISLLQEYGLRRGLTP-VYEVLREEGPPHMPNFVFRVTV 77 (339)
T ss_pred ccchhhhhccccccchhhccCCCcchhccc---ccCcccCChHHHHHHHHHHhCCCc-ceeeeeccCCccCCCeEEEEEE
Confidence 678889999999999999986643321100 0111 2999999999999999975 9999999999999999999999
Q ss_pred ccEEEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCccCCCCcccccccccCCCCCCCccccchhhhhhhhhhhhccccCC
Q psy5350 207 NVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKT 286 (377)
Q Consensus 207 ~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (377)
+.++++|.|+|||.||++||..+|..|+..++-.+..-+. +... ... +.
T Consensus 78 g~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~~---------------~~~~---------------~~~-~~ 126 (339)
T KOG3732|consen 78 GEITATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKDS---------------LKFA---------------KMK-SS 126 (339)
T ss_pred eeeEEecCCCchhHHHHHHHHHHHHHHhcCCCccccccCc---------------cccc---------------ccc-cC
Confidence 9999999999999999999999999999988543221000 0000 000 00
Q ss_pred CCchhHhhhc-cCCCCCCCCCHHHHHHHHHhhcCc-eEEEEeecccCCCCceEEEEEEecCCceEEEeecCCHHHHHHHH
Q psy5350 287 KGPLLEKLLS-TRNLIDEVEDPILYLEDLSDELKY-RVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEA 364 (377)
Q Consensus 287 ~~~~~~~~l~-~~~~~~~~~n~i~~L~el~q~~~~-~~~~~~~~~~g~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~A 364 (377)
+.. . .+ ..+......|||++|+||||..++ .++|..+.+.|++|...|+|+|+... ++.+|.|+|||.||++|
T Consensus 127 ~~~---~-~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~-~~~~GkG~sKKiAKRnA 201 (339)
T KOG3732|consen 127 GVK---K-DQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVEN-FTEEGKGPSKKIAKRNA 201 (339)
T ss_pred Ccc---c-cCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecc-eeeecCCchHHHHHHHH
Confidence 000 0 00 112344678999999999996655 69999999999999999999999755 69999999999999999
Q ss_pred HHHHHHHHH
Q psy5350 365 VYRALDFLQ 373 (377)
Q Consensus 365 A~~aL~~L~ 373 (377)
|.+||..|.
T Consensus 202 AeamLe~l~ 210 (339)
T KOG3732|consen 202 AEAMLESLG 210 (339)
T ss_pred HHHHHHHhc
Confidence 999999886
No 3
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.96 E-value=2.2e-29 Score=230.11 Aligned_cols=141 Identities=26% Similarity=0.349 Sum_probs=128.3
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH-------hh--
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE-------VM-- 69 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~-------~~-- 69 (377)
|-.+|+...+ +|+++||++||++|+|+++.||++++++++|+|||+ ||||| + |+++++.|. +.
T Consensus 79 ra~lV~~~~La~ia~~l~l~~~l~lg~ge~~~gg~~~~silaD~~EAligAiylD-~---g~~~~~~~i~~l~~~~~~~~ 154 (235)
T COG0571 79 RAALVSEESLAEIARELGLGDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLD-S---GLEAARKFILKLFLPRLEEI 154 (235)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCChhhcCCCCchhHHHHHHHHHHHHHHHh-C---ChHHHHHHHHHHHHHHHhhc
Confidence 6678999998 999999999999999999999999999999999999 99999 8 999999991 11
Q ss_pred hcCCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 70 RLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 70 ~~~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
......+|||+.||||||+++ ..|.|+++.++||+|++.|++.|.|+|. ..+.|.|+|||+|||.||+.||+.|..
T Consensus 155 ~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~---~~g~G~G~skk~AEq~AA~~al~~l~~ 231 (235)
T COG0571 155 DAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGK---ELGTGKGRSKKEAEQAAAEQALKKLGV 231 (235)
T ss_pred cccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCe---eEEEecccCHHHHHHHHHHHHHHHhcc
Confidence 122334899999999999985 7999999999999999999999999997 899999999999999999999999975
Q ss_pred CC
Q psy5350 149 RD 150 (377)
Q Consensus 149 ~~ 150 (377)
..
T Consensus 232 ~~ 233 (235)
T COG0571 232 KE 233 (235)
T ss_pred cc
Confidence 43
No 4
>PRK12371 ribonuclease III; Reviewed
Probab=99.95 E-value=5.1e-28 Score=223.12 Aligned_cols=139 Identities=20% Similarity=0.200 Sum_probs=124.2
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH-------hhhc
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE-------VMRL 71 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~-------~~~~ 71 (377)
|..+||.+.+ +|.++||++||++|.++...+++..+++++|+|||+ |||+| + |++.|+.|. +...
T Consensus 81 rs~lV~n~~La~ia~~lgL~~~i~~~~~~~~~~~~~~~~ilad~~EAliGAiylD-~---G~~~a~~~i~~~~~~~~~~~ 156 (235)
T PRK12371 81 LNQLVNAETCAAIADEIGLHDLIRTGSDVKKLTGKRLLNVRADVVEALIAAIYLD-G---GLEAARPFIQRYWQKRALET 156 (235)
T ss_pred HHHHhChHHHHHHHHHCCcHHHhccCcchhhcCCcccchHHHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHhcc
Confidence 6678999887 899999999999998887777888889999999999 99999 8 999999991 1112
Q ss_pred CCCCCChHHHHHHHHHhC-CCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 72 NTGDRTPVSLMQELLSRR-GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 72 ~~~~~~pks~L~E~~q~~-~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
.....|||+.||||||++ +..|.|+++.+.||+|.+.|+|+|+++|. ..++|.|.|||+||++||+.||+.|..
T Consensus 157 ~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~---~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 157 DAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGF---APETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred ccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCE---EEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 235679999999999987 57899999999999999999999999998 789999999999999999999999864
No 5
>PRK14718 ribonuclease III; Provisional
Probab=99.95 E-value=1.5e-27 Score=231.23 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=125.7
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH--hh-----h-
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE--VM-----R- 70 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~--~~-----~- 70 (377)
|..|||..++ +++.|||++||++|.++...+++.++++|+|+|||| ||||| + ||+.++.|. ++ .
T Consensus 69 RS~LVSnetLA~IAr~LGL~d~Lrlg~gE~~sgG~~~~sILADvFEALIGAIYLD-s---G~e~a~~fI~~ll~p~i~~~ 144 (467)
T PRK14718 69 RANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD-G---GFEAAQGVIKRLYVPILDHI 144 (467)
T ss_pred HHHHhhhHHHHHHHHHcCchHHHhhCCcccccCCCCChhHHHHHHHHHHHHHHHc-c---CHHHHHHHHHHHHHHHHhhh
Confidence 6789999998 999999999999999998888888999999999999 99999 8 999999991 11 1
Q ss_pred -cCCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 71 -LNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 71 -~~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
.....+|||+.||||||+++ ..|+|+++.+.||+|.+.|+|.|+|++.. +.+.|.|.|||+|||.||+.||+.|..
T Consensus 145 d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~--~~G~G~G~SKKeAEQ~AAk~AL~kL~~ 222 (467)
T PRK14718 145 DPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLD--IKVSGSGASRRAAEQAAAKKALDEVTA 222 (467)
T ss_pred cccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCee--eEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 22346899999999999996 67999999999999999999999999852 558999999999999999999999984
Q ss_pred C
Q psy5350 149 R 149 (377)
Q Consensus 149 ~ 149 (377)
.
T Consensus 223 ~ 223 (467)
T PRK14718 223 V 223 (467)
T ss_pred c
Confidence 3
No 6
>PRK12372 ribonuclease III; Reviewed
Probab=99.94 E-value=8.2e-27 Score=225.13 Aligned_cols=141 Identities=21% Similarity=0.279 Sum_probs=125.6
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH--h----hh--
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE--V----MR-- 70 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~--~----~~-- 70 (377)
|..+||...+ ++..|||++||++|.++...+++.++++|+|+|||+ ||||| + |++.++.|. + +.
T Consensus 69 RS~LVsn~tLA~IA~~LgL~~~Lrlg~ge~~sgg~~~~kILADvfEALIGAIYLD-s---G~e~a~~fV~~ll~p~l~~~ 144 (413)
T PRK12372 69 RANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD-G---GFEAAQGVIKRLYVPILDHI 144 (413)
T ss_pred HHHHhhhHHHHHHHHHcCchHhhhcCcchhhcCCCCCccHHHHHHHHHHHHHHHh-C---CHHHHHHHHHHHHHHHHhhc
Confidence 6789999998 899999999999999998888888999999999999 99999 8 999999991 1 11
Q ss_pred -cCCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 71 -LNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 71 -~~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
.....+|||+.||||||+++ ..|+|+++.+.||+|++.|+|.|+|+|.. +.+.|.|.|||+|||.||+.||+.|..
T Consensus 145 ~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~--~~g~G~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 145 DPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLD--VKVSGSGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred ccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeE--EEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 12346799999999999985 68999999999999999999999999852 568999999999999999999999985
Q ss_pred C
Q psy5350 149 R 149 (377)
Q Consensus 149 ~ 149 (377)
.
T Consensus 223 ~ 223 (413)
T PRK12372 223 A 223 (413)
T ss_pred c
Confidence 3
No 7
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.90 E-value=1.2e-23 Score=194.29 Aligned_cols=139 Identities=28% Similarity=0.351 Sum_probs=122.7
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH-------h--h
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE-------V--M 69 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~-------~--~ 69 (377)
|..+||...+ ++.++||+++|+.+.++...++..++++++|+|||+ |||+| + |++.++.|. + +
T Consensus 76 ~~~lvsn~~la~~a~~lgl~~~i~~~~~~~~~~~~~~~k~~ad~~EA~iGAiyld-~---g~~~~~~~i~~~~~~~l~~~ 151 (229)
T PRK00102 76 RAALVREESLAEIARELGLGEYLLLGKGEEKSGGRRRPSILADAFEALIGAIYLD-Q---GLEAARKFILRLFEPRIEEI 151 (229)
T ss_pred HHHHhCHHHHHHHHHHCCcHHHHccCcHHHHcCCCCCccHHHHHHHHHHHHHHHh-C---CHHHHHHHHHHHHHHHHHhh
Confidence 5678988888 899999999999998876666677789999999999 99999 8 999999991 1 1
Q ss_pred hcCCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 70 RLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 70 ~~~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
.......|||+.|+||||+++ ..|.|+++..+|+.|.+.|+|+|+++|. .+++|.|.|||+||+.||+.||+.|..
T Consensus 152 ~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~---~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 152 DLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGK---ELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred ccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCE---EEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 123467899999999999986 5799999999999999999999999997 899999999999999999999999864
No 8
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.89 E-value=1.1e-22 Score=186.71 Aligned_cols=137 Identities=30% Similarity=0.341 Sum_probs=120.1
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH-------hh--
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE-------VM-- 69 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~-------~~-- 69 (377)
|..+||.+.+ ++.++||+++|+.+.++...+++..+++++|+|||+ |||+| + |++.++.|. +.
T Consensus 70 ~~~lvsn~~la~~a~~~gl~~~i~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld-~---g~~~~~~~i~~~~~~~~~~~ 145 (220)
T TIGR02191 70 RAALVSEESLAEVARELGLGKFLLLGKGEEKSGGRRRESILADAFEALIGAIYLD-S---GLEAARKFILKLLIPRIDAI 145 (220)
T ss_pred HHHHhCHHHHHHHHHHCCcHHHhccCchHhhcCCcccchHHHHHHHHHHHHHHHh-C---CHHHHHHHHHHHHHHHHHhh
Confidence 5568888887 889999999999998776666677789999999999 99999 8 999999991 11
Q ss_pred hcCCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHH
Q psy5350 70 RLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146 (377)
Q Consensus 70 ~~~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L 146 (377)
.......|||+.|+||||+++ ..|.|+++...|++|.+.|.|.|+++|. .++.|.|.|||+||+.||+.||+.|
T Consensus 146 ~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~---~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 146 EKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGE---PYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred hcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCE---EEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 123467899999999999875 5799999888899999999999999997 8999999999999999999999875
No 9
>KOG1817|consensus
Probab=99.77 E-value=1.8e-18 Score=165.38 Aligned_cols=139 Identities=22% Similarity=0.207 Sum_probs=120.7
Q ss_pred ccccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH-------h--
Q psy5350 2 ARVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE-------V-- 68 (377)
Q Consensus 2 ~~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~-------~-- 68 (377)
-|.+|||.+.. -++.+||++|++++...++ ..+.+.|.+||+|||+ |+|+| + |++.|++|. +
T Consensus 345 LRssLVsNetqakva~~lgf~e~li~n~~~k~-~~~lk~K~~ADlfEAfiGaLyvD-~---~le~~~qf~~~l~~Prl~~ 419 (533)
T KOG1817|consen 345 LRSSLVSNETQAKVADDLGFHEYLITNFDLKD-FQNLKLKDYADLFEAFIGALYVD-K---GLEYCRQFLRVLFFPRLKE 419 (533)
T ss_pred HHHHHhccHHHHHHHHHhCCchhhhhCcchhh-hhhhhHHHHHHHHHHHHHHHhhc-C---CcHHHHHHHHHHhhHHHHH
Confidence 38899999988 6799999999999865533 4556679999999999 99999 8 999999991 1
Q ss_pred hhcCCCCCChHHHHHHHHHhC----C---CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHH
Q psy5350 69 MRLNTGDRTPVSLMQELLSRR----G---TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKS 141 (377)
Q Consensus 69 ~~~~~~~~~pks~L~E~~q~~----~---~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~ 141 (377)
......+.+|++.||.||... + ..|.|.++...||.+++.|+|.|+++|+ .+++|+|+|.|.|+.+||++
T Consensus 420 fi~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gk---rlat~~G~nik~Ae~rAA~~ 496 (533)
T KOG1817|consen 420 FIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGK---RLATGVGSNIKQAEMRAAMQ 496 (533)
T ss_pred HHHhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCE---EEeeccCchHhHHHHHHHHH
Confidence 223456889999999999654 1 4688999999999999999999999998 89999999999999999999
Q ss_pred HHHHHhc
Q psy5350 142 VLDQLIG 148 (377)
Q Consensus 142 aL~~L~~ 148 (377)
||+.+..
T Consensus 497 ALe~~~~ 503 (533)
T KOG1817|consen 497 ALENLKM 503 (533)
T ss_pred HHHHHHh
Confidence 9999985
No 10
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.68 E-value=1.5e-16 Score=137.88 Aligned_cols=73 Identities=30% Similarity=0.366 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 74 ~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
...|||+.||||||+++..+.|+++.+.||+|.+.|++.|.|+|. .++.|.|.|||+|||+||+.||..|...
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~---~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGK---VVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCE---EEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 457999999999999975559999999999999999999999998 8999999999999999999999998643
No 11
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.62 E-value=2.7e-15 Score=111.15 Aligned_cols=67 Identities=42% Similarity=0.659 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHhC-CCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHH
Q psy5350 77 TPVSLMQELLSRR-GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146 (377)
Q Consensus 77 ~pks~L~E~~q~~-~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L 146 (377)
|||+.|+||||++ +..|.|+++...|++|.+.|+|.|.+++. ..+.|.|.|||+|++.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~---~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGK---ITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCE---EEEEeecCCHHHHHHHHHHHHHHhC
Confidence 7999999999998 68999999888999999999999999997 8899999999999999999999875
No 12
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.62 E-value=2.5e-15 Score=111.33 Aligned_cols=67 Identities=43% Similarity=0.455 Sum_probs=63.2
Q ss_pred ChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEcc-EEEEEecCCHHHHHHHHHHHHHHHh
Q psy5350 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233 (377)
Q Consensus 167 n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~sKK~Ak~~AA~~~l~~L 233 (377)
||++.|+|+||++++..|.|.+....|+.|.+.|++.|.+++ ..+.|.|+|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 799999999999999899999988899999999999999998 6799999999999999999999875
No 13
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.62 E-value=2.3e-15 Score=111.37 Aligned_cols=66 Identities=45% Similarity=0.725 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHH
Q psy5350 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146 (377)
Q Consensus 78 pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L 146 (377)
||+.|+||||+++..|.|+++...|++|.+.|+|.|.++|+ .++.|.|.|||+|++.||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~---~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGE---YTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCE---EEEEeccCCHHHHHHHHHHHHHHhc
Confidence 78999999999987999999988899999999999999997 7889999999999999999999987
No 14
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.61 E-value=2.3e-15 Score=131.44 Aligned_cols=74 Identities=24% Similarity=0.321 Sum_probs=66.0
Q ss_pred CCCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 72 ~~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
+-..+|||+.||||||+++... |..+...||+|.+.|+|.|.|+|+ .+++|.|.|||+|||+||+.||..|...
T Consensus 105 d~K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~---~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 105 SWKDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGI---KFKPAIGSTKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred ccccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCE---EEEEeeeCCHHHHHHHHHHHHHHHHHhc
Confidence 4456799999999999987555 666788999999999999999998 8999999999999999999999998643
No 15
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.57 E-value=1.3e-14 Score=107.32 Aligned_cols=65 Identities=43% Similarity=0.519 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEcc-EEEEEecCCHHHHHHHHHHHHHHHh
Q psy5350 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV-YKEEGMGKSKKIAKREAALNMLKFL 233 (377)
Q Consensus 168 ~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~sKK~Ak~~AA~~~l~~L 233 (377)
|++.|+|+||++++ .|.|.+....|++|.+.|+|.|.+++ ..+.|.|.|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 68999999999999 68999998789999999999999998 4689999999999999999999887
No 16
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.57 E-value=1.3e-14 Score=125.80 Aligned_cols=73 Identities=27% Similarity=0.340 Sum_probs=66.9
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
....||++.||||||+.+... .|.++.+.||.|.+.|+++|.|++. .++|.|+|||+|+++||+.||..|...
T Consensus 105 ~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 105 LKTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 456799999999999999887 8999988999999999999999875 589999999999999999999998543
No 17
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.56 E-value=2.9e-14 Score=105.66 Aligned_cols=66 Identities=35% Similarity=0.495 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhCCCCCeEEEEeeeCCCCC-CeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHH
Q psy5350 78 PVSLMQELLSRRGTAPKYELIQIEGAINE-PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL 146 (377)
Q Consensus 78 pks~L~E~~q~~~~~p~Y~~~~~~G~~h~-~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L 146 (377)
||+.|+|||++++..|.|..+...+++|. +.|.|+|.++|. .++.|.|.|||+|++.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~---~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGK---EYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTE---EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCE---EEeEeccCCHHHHHHHHHHHHHHhC
Confidence 79999999999998888888888887776 899999999998 7889999999999999999999986
No 18
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.51 E-value=7.9e-14 Score=121.86 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=65.1
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 161 ~~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
.+....||++.||||||+++... |..+.+.||+|.+.|+++|.|++. .++|.|+|||+|+|+||+.||..|...
T Consensus 104 ~d~K~kNpKS~LQE~~Qk~~~~~--y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 104 ISWKDKNPCTVINEYCQITSRDW--SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred hccccCChhHHHHHHHHHhCCCe--EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhc
Confidence 34667899999999999999874 556667999999999999999986 589999999999999999999999643
No 19
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.48 E-value=2.2e-13 Score=100.89 Aligned_cols=65 Identities=38% Similarity=0.565 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhcCCCCCeeEeecccCCCCC-ceEEEEEEEccEE-EEEecCCHHHHHHHHHHHHHHHh
Q psy5350 168 PVGQLQEACMTRKWPPPVYETEETTGLPHE-RMFTVCAYVNVYK-EEGMGKSKKIAKREAALNMLKFL 233 (377)
Q Consensus 168 ~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~-~~F~~~v~v~~~~-~~G~G~sKK~Ak~~AA~~~l~~L 233 (377)
|++.|+|||++.++.+ .|..+...+++|. +.|+|+|.+++.. +.|.|+|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPP-PYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSE-EEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCC-CEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 7899999999999876 5555545666555 8999999999875 69999999999999999999886
No 20
>PRK12371 ribonuclease III; Reviewed
Probab=99.43 E-value=5.5e-13 Score=123.25 Aligned_cols=72 Identities=31% Similarity=0.368 Sum_probs=66.8
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
...||++.||||||+.+...|.|.++.+.||.|.+.|+|+|.+++. .++|.|+|||+|+++||+.||+.|..
T Consensus 159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 3569999999999999888899999988999999999999999986 58999999999999999999999865
No 21
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.42 E-value=1.7e-12 Score=119.22 Aligned_cols=75 Identities=31% Similarity=0.300 Sum_probs=69.7
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
....||+..||||||+++.+.|.|.++.++||+|++.|++.|.+++. .++|.|+|||+|+|.||+.||..|....
T Consensus 158 ~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~~ 233 (235)
T COG0571 158 DQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVKE 233 (235)
T ss_pred ccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcccc
Confidence 34489999999999999999999999999999999999999999994 6999999999999999999999997654
No 22
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.41 E-value=5.7e-13 Score=102.29 Aligned_cols=69 Identities=33% Similarity=0.482 Sum_probs=60.8
Q ss_pred CChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEE--------EE--ec-CCHHHHHHHHHHHHHHHhh
Q psy5350 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE--------EG--MG-KSKKIAKREAALNMLKFLE 234 (377)
Q Consensus 166 ~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~--------~G--~G-~sKK~Ak~~AA~~~l~~L~ 234 (377)
+++++.|+|+|++++|+.|.|++..+.||+|.+.|++.|.|.+... .+ .+ .+||+||..||+.+|+.|+
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999998899999999999999987532 12 33 6899999999999999884
No 23
>PRK14718 ribonuclease III; Provisional
Probab=99.37 E-value=1.8e-12 Score=126.75 Aligned_cols=73 Identities=29% Similarity=0.332 Sum_probs=67.9
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE--EEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY--KEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~--~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
...||++.||||||++++..|+|.++.+.||.|.+.|++.|.|++. .+.|.|.|||+|+|.||+.+|+.|...
T Consensus 149 ~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~ 223 (467)
T PRK14718 149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAV 223 (467)
T ss_pred cccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 4579999999999999999999999999999999999999999984 479999999999999999999999854
No 24
>PRK12372 ribonuclease III; Reviewed
Probab=99.32 E-value=6e-12 Score=122.42 Aligned_cols=74 Identities=27% Similarity=0.305 Sum_probs=68.2
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE--EEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY--KEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~--~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
...||++.||||||++++..|+|.++.+.||.|.+.|+|.|+|++. .+.|.|.|||+|+|.||+.+|+.|....
T Consensus 149 ~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~~~ 224 (413)
T PRK12372 149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAAA 224 (413)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhccc
Confidence 3569999999999999999999999999999999999999999973 4799999999999999999999998544
No 25
>KOG2777|consensus
Probab=99.27 E-value=1.7e-11 Score=122.85 Aligned_cols=131 Identities=29% Similarity=0.418 Sum_probs=110.2
Q ss_pred CeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCCCcccc-------c------ccc
Q psy5350 93 PKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLM-------C------QKE 159 (377)
Q Consensus 93 p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~~~~~~-------~------~~~ 159 (377)
++|..+...||.|.|.|.+.|.|++.. . . ||.|++.||+.|++.+...+..... + +.+
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~---~---~---~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQE---F---P---KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQAD 80 (542)
T ss_pred cccccccccCCCCCCcccceEEecccc---c---c---cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhH
Confidence 789999999999999999999999962 2 2 9999999999999999876443211 1 000
Q ss_pred ---CCCCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 160 ---NLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 160 ---~~~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
......+||++.|+|+.+ -|.|.++.+.||.|.+.|.|.|.|+|...+|.|+|||+||++||..+|+.|...
T Consensus 81 ~~~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~~~sKk~ak~~aa~~al~~l~~~ 155 (542)
T KOG2777|consen 81 AFLSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGGGRSKKEAKQEAAMAALQVLFKI 155 (542)
T ss_pred HHHhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCCCcchHHHHHHHHHHHHHHHHhc
Confidence 112348899999999997 469999999999999999999999999988779999999999999999999886
Q ss_pred C
Q psy5350 237 P 237 (377)
Q Consensus 237 ~ 237 (377)
.
T Consensus 156 ~ 156 (542)
T KOG2777|consen 156 D 156 (542)
T ss_pred c
Confidence 5
No 26
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.26 E-value=2.3e-11 Score=112.29 Aligned_cols=73 Identities=37% Similarity=0.395 Sum_probs=67.6
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
....||++.|+|+||+.++..|.|.++.++|+.|.+.|+++|.+++. .++|.|.|||+|++.||+.||+.|+.
T Consensus 155 ~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 155 DLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred cccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 45679999999999999999999999988999999999999999985 69999999999999999999999864
No 27
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.22 E-value=3.8e-11 Score=92.17 Aligned_cols=72 Identities=29% Similarity=0.434 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHhC-CCCCeEEEEeeeCCCCCCeEEEEEEECCccce------eE-EEeeccchhHHHHHHHHHHHHHHh
Q psy5350 76 RTPVSLMQELLSRR-GTAPKYELIQIEGAINEPIFKYRISLTSESRL------YV-AIGSGKSKKEAKHNAAKSVLDQLI 147 (377)
Q Consensus 76 ~~pks~L~E~~q~~-~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~------~~-~~g~G~sKK~Ae~~AA~~aL~~L~ 147 (377)
++|++.|+|+|+++ +..|.|++..+.||+|.+.|++.|.|.+.... .+ +.--..+||+|+..||+.||..|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 58999999999998 68999999988999999999999999987421 01 112347889999999999999874
No 28
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.20 E-value=6.7e-11 Score=108.49 Aligned_cols=70 Identities=37% Similarity=0.350 Sum_probs=64.9
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHh
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFL 233 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L 233 (377)
...||++.|+|+||++++..|.|+++.+.|++|.+.|++.|.+++. .++|.|.|||+|+++||+.||+.|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 5679999999999999998899999988899999999999999875 589999999999999999999875
No 29
>KOG4334|consensus
Probab=99.12 E-value=3.6e-10 Score=110.13 Aligned_cols=155 Identities=20% Similarity=0.158 Sum_probs=103.6
Q ss_pred CCChHHHHHHHHHhC-CCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCCCcc
Q psy5350 75 DRTPVSLMQELLSRR-GTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEK 153 (377)
Q Consensus 75 ~~~pks~L~E~~q~~-~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~~~~ 153 (377)
.+..++.|+||+|+. ...|.|++.+.+.+ .-.|...|.+++. .+|+|+|.|||.|+..||+.+|+.|...-...
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e~~n~--stpysa~v~~d~~---~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~ 448 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAENDNN--STPYSAGVLPDLF---PYGSGVGASKKTAKLVAARDTLEILIPDLRVS 448 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhhccCC--CCccccccccccc---ccccccccchHHHHHHHHHHHHHHhcchhhhc
Confidence 456689999999987 57999998765543 4579999999997 89999999999999999999999997532211
Q ss_pred ccc------------ccc-----------C------CCCCCCChhHHHHHHHHhcC-CCCCeeEeecccCCCCCceEEEE
Q psy5350 154 LMC------------QKE-----------N------LFKVEPNPVGQLQEACMTRK-WPPPVYETEETTGLPHERMFTVC 203 (377)
Q Consensus 154 ~~~------------~~~-----------~------~~~~~~n~~~~L~e~~q~~~-~~~p~y~~~~~~Gp~h~~~F~~~ 203 (377)
..| ++. + ..-...+|-..|.++.+++. |. .-.+..+--+..+..-.+.
T Consensus 449 ~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~--d~~ik~E~i~~~nqkse~i 526 (650)
T KOG4334|consen 449 EDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWN--DLVIKKEMIGNGNQKSEVI 526 (650)
T ss_pred ccccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCc--ceeeeeeccCCCCccceeE
Confidence 111 100 0 00122344444444443322 21 1111111111122222344
Q ss_pred EEEccEEEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 204 AYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 204 v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
+.++.++.+|.+++|+.+||-|.+.+|+.|...
T Consensus 527 m~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh 559 (650)
T KOG4334|consen 527 MILGKHTEEAECKNKRQGKQLASQRILQKLHPH 559 (650)
T ss_pred eeeccceeeeeeechhHHHHHHHHHHHHHhCHH
Confidence 678899999999999999999999999999653
No 30
>KOG2777|consensus
Probab=98.99 E-value=1.6e-09 Score=108.81 Aligned_cols=147 Identities=24% Similarity=0.265 Sum_probs=103.5
Q ss_pred CCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCccCCCCcccccccccCCCCC
Q psy5350 182 PPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHT 261 (377)
Q Consensus 182 ~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 261 (377)
+.++|..+.+.||.|.+.|.++|.|++..+. ||.|+..||+.+++.+.+.+....... ....+...
T Consensus 8 ~~~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-----~k~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 73 (542)
T KOG2777|consen 8 PGLQYNLVSQTGPVHAPLFPFSVEVNGQEFP-----KKKAKQRAAEKALRVFLQFPEAHLSMG---------GTEGVNED 73 (542)
T ss_pred cccccccccccCCCCCCcccceEEecccccc-----cccccchhhhHHHHHHhhcCCcccccC---------CCCccccc
Confidence 3368999999999999999999999998765 999999999999999988775411110 00000000
Q ss_pred CCccccchhhhhhhhhhhhccccCCCCchhHhhhccCCCCCCCCCHHHHHHHHHhhcCceEEEEeecccCCCCceEEEEE
Q psy5350 262 HDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQ 341 (377)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~n~i~~L~el~q~~~~~~~~~~~~~~g~~~~~~~~v~ 341 (377)
+. +..... ++.. ...+.||+++|+|+++ .+.|..+.+.|+.+.+.|.|.
T Consensus 74 ----~~--------~~~~~~------------~~~~---~~~~~npv~ll~e~~~----~~~~~~~~~~~~~~~~~F~~~ 122 (542)
T KOG2777|consen 74 ----LT--------SDQADA------------FLSL---GKEGKNPVSLLHELAN----GLFFDFVNESGPQHAPKFVMS 122 (542)
T ss_pred ----cc--------hhhhHH------------HHhh---hhccCCchHHHHHHhc----ccceeeeccCCCCCCceEEEE
Confidence 00 000000 0110 1127899999999998 445555666788887777777
Q ss_pred EecCCceEEEeecCCHHHHHHHHHHHHHHHHHh
Q psy5350 342 LTTTPVTVFCGTGASIEVAKIEAVYRALDFLQI 374 (377)
Q Consensus 342 v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L~~ 374 (377)
+.... .+|.|.|.|||+||++||..||+.|..
T Consensus 123 ~~vdg-~~~~~~~~sKk~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 123 VVVDG-RWFEGGGRSKKEAKQEAAMAALQVLFK 154 (542)
T ss_pred EEECC-EEccCCCcchHHHHHHHHHHHHHHHHh
Confidence 66543 578888999999999999999998854
No 31
>KOG3769|consensus
Probab=98.83 E-value=3.2e-09 Score=98.19 Aligned_cols=136 Identities=20% Similarity=0.210 Sum_probs=105.1
Q ss_pred cchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhH---HhhhcC------C
Q psy5350 7 VSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARL---EVMRLN------T 73 (377)
Q Consensus 7 v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~---~~~~~~------~ 73 (377)
.++.++ +|.-+|++++++...=. ..+.-.......+++=|+ ++++. . ++..+++| .++..+ -
T Consensus 155 l~ee~LahiAt~lGie~l~~seeFp-~~~eisq~ess~~aI~Al~~~~~~e-k---~~~~v~dFI~~qi~~k~L~~~~m~ 229 (333)
T KOG3769|consen 155 LGEEVLAHIATHLGIEELGLSEEFP-KVGEISQDESSRRAIGALLGSVGLE-K---GFNFVRDFINDQILSKDLDPREMW 229 (333)
T ss_pred hhHHHHHHHHHHhhHHHHhhcccCC-CchhhhHHHHHHHHHHHHHhcccHH-H---HHHHHHHHHHHHhhhhccchHhhc
Confidence 455566 88899999776544222 111122224556777777 88888 8 89999999 233222 2
Q ss_pred CCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCC-CCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCC
Q psy5350 74 GDRTPVSLMQELLSRRG-TAPKYELIQIEGAIN-EPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150 (377)
Q Consensus 74 ~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h-~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~ 150 (377)
...+|...|-++|++++ ..|+|+++.+.|... .|.|.|.++.|.+ .+|.|.|.|-|.|++.||.+||.+|-...
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kk---llGqG~Gesl~~A~e~AA~dAL~k~y~~t 305 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKK---LLGQGQGESLKLAEEQAARDALIKLYDHT 305 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCch---hhccCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 45799999999999998 789999999988754 4999999999998 89999999999999999999999998654
No 32
>KOG4334|consensus
Probab=98.68 E-value=2.1e-07 Score=91.14 Aligned_cols=179 Identities=17% Similarity=0.104 Sum_probs=112.2
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcCCCCCC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETVPIEIP 241 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~~~~ 241 (377)
...++.++.|+||+|+.....|.|++-..+. ....|...|.++++ ++.|+|.|||.||..||+..|+.|...-....
T Consensus 372 pngks~vCiLhEy~q~~lk~~pvyef~e~~n--~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~ 449 (650)
T KOG4334|consen 372 PNGKSKVCILHEYAQQCLKSLPVYEFAENDN--NSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSE 449 (650)
T ss_pred CCCceeeehHHHHHHHHhhhcceeehhhccC--CCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhhcc
Confidence 4567889999999999999999998875443 45689999999997 58999999999999999999999965432111
Q ss_pred ccCCCCcccccccccCCCCCCCccccchhhhhhhhhhhhc-cccCCCCchhHhhhccCCCCCCCCCHHHHHHHHHhh-cC
Q psy5350 242 EKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTV-FSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDE-LK 319 (377)
Q Consensus 242 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~n~i~~L~el~q~-~~ 319 (377)
. +. +|...-..-+.++ -++.|... ...+ .++ + -+....-..|-.+|.+.-++ +|
T Consensus 450 ~----n~----------~d~k~~~~~k~q~--~le~F~~I~Iedp---rv~-e----~ctk~~~psPy~iL~~cl~Rn~g 505 (650)
T KOG4334|consen 450 D----NV----------CDGKVEEDGKQQG--FLELFKKIKIEDP---RVV-E----MCTKCAIPSPYNILRDCLSRNLG 505 (650)
T ss_pred c----cc----------ccccccccccchh--HHHHhhcccccCc---hHH-H----HhhhcCCCCHHHHHHHHHHhhcC
Confidence 1 00 0100000000011 01111100 0000 010 1 01111234577788887764 56
Q ss_pred c---eEEEEeecccCCCCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHH
Q psy5350 320 Y---RVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372 (377)
Q Consensus 320 ~---~~~~~~~~~~g~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L 372 (377)
+ .+.+..+. .| +..-.++|-|+- ++.+|+-.+|+++|+.|.+..|+.|
T Consensus 506 ~~d~~ik~E~i~-~~-nqkse~im~~Gk---ht~~~~cknkr~gkQlASQ~ilq~l 556 (650)
T KOG4334|consen 506 WNDLVIKKEMIG-NG-NQKSEVIMILGK---HTEEAECKNKRQGKQLASQRILQKL 556 (650)
T ss_pred CcceeeeeeccC-CC-CccceeEeeecc---ceeeeeeechhHHHHHHHHHHHHHh
Confidence 5 34444443 22 223367777753 7888999999999999999999876
No 33
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=98.63 E-value=7.2e-09 Score=87.05 Aligned_cols=60 Identities=22% Similarity=0.170 Sum_probs=49.7
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhH
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARL 66 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~ 66 (377)
|..+|+...+ +|+++||+++++++.++...+++..+++++|+|||+ |||+| + |++.|+.|
T Consensus 56 ~~~lv~~~~La~~a~~lgL~~~i~~~~~~~~~~~~~~~~vlad~feAliGAiyld-~---G~~~a~~~ 119 (128)
T PF14622_consen 56 RSNLVSNETLAEIAKQLGLDKLIRWGPGEEKSGGSGSDKVLADVFEALIGAIYLD-S---GFEAARKF 119 (128)
T ss_dssp HHHHHSHHHHHHHHHHTTCGGC-B--HHHHHTTGGG-HHHHHHHHHHHHHHHHHH-H----HHHHHHH
T ss_pred HHHHhChHHHHHHHHHCCHHHHHHhCccHhhcCCCCCccHHHhHHHHHHHHHHHH-c---CHHHHHHH
Confidence 5578888877 899999999999998877777778899999999999 99999 8 99999999
No 34
>smart00535 RIBOc Ribonuclease III family.
Probab=98.12 E-value=1.4e-06 Score=72.93 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=52.7
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhH
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARL 66 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~ 66 (377)
|..+||.+.+ ++.++||+++++.+..+....++..+++++|+|||+ |||+| + |++.+++|
T Consensus 54 ~~~lvsn~~la~~a~~~~l~~~i~~~~~~~~~~~~~~~k~~a~~~eAliGAi~ld-~---g~~~~~~~ 117 (129)
T smart00535 54 RSALVSNETLARLAKKLGLGEFIRLGRGEAISGGRDKPSILADVFEALIGAIYLD-S---GLEAAREF 117 (129)
T ss_pred HHHHHCHHHHHHHHHHCCcHHHHccCchHhhcCCcccchHHHHHHHHHHHHHHHh-C---CHHHHHHH
Confidence 5578888887 899999999999998776665667789999999999 99999 8 99999998
No 35
>KOG0921|consensus
Probab=98.02 E-value=8.5e-06 Score=85.60 Aligned_cols=155 Identities=22% Similarity=0.282 Sum_probs=123.3
Q ss_pred ChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCCCcc---
Q psy5350 77 TPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEK--- 153 (377)
Q Consensus 77 ~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~~~~--- 153 (377)
|-|+.|..||.++...|.|.+ ..+|+.....|.|+|.+.+.. ..+.|...+||+|+.+||+.-.+.|.....-.
T Consensus 2 d~k~fly~~~~k~~~~p~~d~-~~~~~~~rqrf~ce~~~~~~~--~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d 78 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDI-RSEGRKGRQRFLCEVRVEGFG--YTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSD 78 (1282)
T ss_pred cHHHHHHHHHhhhccCcceeh-hhhcccchhheeeeeeccCCc--ceeeecccccchhhHHHHHHHHHHhhhhccccccC
Confidence 568899999999987899997 566888889999999999874 77888888999999999999999886432100
Q ss_pred -cc---------c---------------------------------------c-------------------c-------
Q psy5350 154 -LM---------C---------------------------------------Q-------------------K------- 158 (377)
Q Consensus 154 -~~---------~---------------------------------------~-------------------~------- 158 (377)
+. + + +
T Consensus 79 ~p~~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~ 158 (1282)
T KOG0921|consen 79 IPTLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNA 158 (1282)
T ss_pred CcccccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCc
Confidence 00 0 0 0
Q ss_pred -cCCCCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEcc------EEEEEecCCHHHHHHHHHHHHHH
Q psy5350 159 -ENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV------YKEEGMGKSKKIAKREAALNMLK 231 (377)
Q Consensus 159 -~~~~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~------~~~~G~G~sKK~Ak~~AA~~~l~ 231 (377)
....+...|.+..|+++-|+..... .|..+ ..||.|.+.|+.+..+-- .+..+.|.+||.|....|.....
T Consensus 159 ~ihg~wt~eN~K~~ln~~~q~~~~~~-~y~~~-~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vr 236 (1282)
T KOG0921|consen 159 EIHGNWTMENAKKALNEYLQKMRIQD-NYKYT-IVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVR 236 (1282)
T ss_pred cccCCCCcchhHHHHhHHHhhhhhcc-cccee-ecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHH
Confidence 0134667899999999999999966 88887 579999999998877542 24788999999999999999988
Q ss_pred HhhcC
Q psy5350 232 FLETV 236 (377)
Q Consensus 232 ~L~~~ 236 (377)
.|...
T Consensus 237 qm~hl 241 (1282)
T KOG0921|consen 237 QLFHL 241 (1282)
T ss_pred HHHHH
Confidence 77653
No 36
>KOG1817|consensus
Probab=98.00 E-value=2e-05 Score=76.71 Aligned_cols=75 Identities=25% Similarity=0.419 Sum_probs=66.5
Q ss_pred CCCCCChhHHHHHHHHhcCCC------CCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhh
Q psy5350 162 FKVEPNPVGQLQEACMTRKWP------PPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLE 234 (377)
Q Consensus 162 ~~~~~n~~~~L~e~~q~~~~~------~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~ 234 (377)
+...-+|++.|+++|.....+ +|.|.+....||.+.+.|++.|.++|. .++|.|+|-|.|.-+||+.||+.+.
T Consensus 423 nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~ 502 (533)
T KOG1817|consen 423 NQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLK 502 (533)
T ss_pred hhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHH
Confidence 345668999999999977654 688999988999999999999999986 5999999999999999999999997
Q ss_pred cC
Q psy5350 235 TV 236 (377)
Q Consensus 235 ~~ 236 (377)
..
T Consensus 503 ~d 504 (533)
T KOG1817|consen 503 MD 504 (533)
T ss_pred hh
Confidence 63
No 37
>KOG3792|consensus
Probab=97.97 E-value=1e-05 Score=82.90 Aligned_cols=151 Identities=21% Similarity=0.132 Sum_probs=111.2
Q ss_pred CCChHHHHHHHHHhCCCCCeEE------EEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 75 DRTPVSLMQELLSRRGTAPKYE------LIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 75 ~~~pks~L~E~~q~~~~~p~Y~------~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
..||...+--+=+++ ...+|+ ++...||.|.++|+.+|.+++. .....|+|+|.|+-.||.+.|.....
T Consensus 369 f~d~nak~mhl~grR-hrLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~----~~~a~gps~~~~~wh~~~k~lq~~~~ 443 (816)
T KOG3792|consen 369 FNDPNAKEMHLKGRR-HRLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGL----PAEAEGPSKKTAKWHAARKRLQNEGR 443 (816)
T ss_pred CCCcchHHhhhhccc-ccceeccccCCCceeccCCcccchhhhhhhhcCC----ccccCCcccccchHHHHHHHhhccCC
Confidence 445555554444433 345788 8889999999999999999995 67788999999999999999987731
Q ss_pred CCC---------------cccc----ccc--------------------------cCCCCCCCChhHHHHHHHHhcCCCC
Q psy5350 149 RDD---------------EKLM----CQK--------------------------ENLFKVEPNPVGQLQEACMTRKWPP 183 (377)
Q Consensus 149 ~~~---------------~~~~----~~~--------------------------~~~~~~~~n~~~~L~e~~q~~~~~~ 183 (377)
... +... ++. .-.....+++...|+|- .+ .
T Consensus 444 p~ga~~r~~~~ge~~a~~p~~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek--~r--g- 518 (816)
T KOG3792|consen 444 PTGAAQRFGRMGEDPASMPEPKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK--RR--G- 518 (816)
T ss_pred CccccccccccCCCcccCCCCCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh--cc--c-
Confidence 100 0000 000 00124567777777775 22 2
Q ss_pred CeeEeecccC-CCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 184 PVYETEETTG-LPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 184 p~y~~~~~~G-p~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
-.|++.++.| ..|.++|++.|.+.|+.+.|.+.+++-|+.-|+..+++.+..
T Consensus 519 ~k~El~set~~gs~~~R~v~gV~rvG~~akG~~~~gd~a~~~a~Lca~~pt~~ 571 (816)
T KOG3792|consen 519 DKYELPSETGTGSHDKRFVKGVMRVGILAKGLLLNGDRAVELALLCAEKPTSG 571 (816)
T ss_pred cceecccccCCCCCCceeeeeeeeeehhhccccccchHHHHHHHHhccCcccc
Confidence 3899988887 789999999999999999999999999999998888765543
No 38
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=97.92 E-value=5.3e-06 Score=69.55 Aligned_cols=60 Identities=22% Similarity=0.150 Sum_probs=50.9
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhH
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARL 66 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~ 66 (377)
|..+||.+.+ ++.++||.++++.+...........+++++|+|||+ |||+| + |++.+++|
T Consensus 56 ~~~~v~n~~l~~~a~~~gl~~~i~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld-~---g~~~~~~~ 119 (133)
T cd00593 56 RSALVSNETLARLARELGLGKYLRLGKGEEKSGGRLRPKILADVFEALIGAIYLD-G---GFEAARKF 119 (133)
T ss_pred HHHHHCHHHHHHHHHHcCcHHHhccCchHhhcCCcccccHHHHHHHHHHHHHHHh-C---CHHHHHHH
Confidence 4567888887 899999999999987765444456789999999999 99999 7 89999998
No 39
>KOG3792|consensus
Probab=97.89 E-value=1.3e-05 Score=82.06 Aligned_cols=190 Identities=16% Similarity=-0.014 Sum_probs=112.4
Q ss_pred ChhHHHHHHHHhcCCCCCeeE------eecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCCCCC
Q psy5350 167 NPVGQLQEACMTRKWPPPVYE------TEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEI 240 (377)
Q Consensus 167 n~~~~L~e~~q~~~~~~p~y~------~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~~~ 240 (377)
++-..+..+-+.+. -.+|. ++...||.|.++|++++.+++...+..|+|||.|+-.||.+.|+......-..
T Consensus 371 d~nak~mhl~grRh--rLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a~gps~~~~~wh~~~k~lq~~~~p~ga~ 448 (816)
T KOG3792|consen 371 DPNAKEMHLKGRRH--RLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEAEGPSKKTAKWHAARKRLQNEGRPTGAA 448 (816)
T ss_pred CcchHHhhhhcccc--cceeccccCCCceeccCCcccchhhhhhhhcCCccccCCcccccchHHHHHHHhhccCCCcccc
Confidence 44444444444333 24899 88899999999999999999999999999999999999999998885211000
Q ss_pred CccCCCCcccccccccCCCCCCCccccchhhhhhhhhhhhccccCCCCchhHhhh--ccCCCCCCCCCHHHHHHHHHhhc
Q psy5350 241 PEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLL--STRNLIDEVEDPILYLEDLSDEL 318 (377)
Q Consensus 241 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~n~i~~L~el~q~~ 318 (377)
.... .+-.++.+ . .......|... +.- .+.+.|... .++...+ +. + +...+....+++++.|+| .
T Consensus 449 ~r~~-~~ge~~a~-~-p~~~~r~~as~--ddr-~a~~~~a~~-~Pt~~~l-~n-Vqr~vs~~~~alK~vsd~L~E----k 515 (816)
T KOG3792|consen 449 QRFG-RMGEDPAS-M-PEPKGRRPASV--DDR-HANEKHAGI-YPTEEEL-EN-VQRQVSHLERALKLVSDELAE----K 515 (816)
T ss_pred cccc-ccCCCccc-C-CCCCCcccCCC--cch-hhhcccccc-CccHHHH-HH-HHHhhhHHHHhhcchhHHHhh----h
Confidence 0000 00000000 0 00000000000 000 000000000 0010001 00 0 011223356789999998 3
Q ss_pred CceEEEEeecccC-CCCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHH
Q psy5350 319 KYRVSFVDIEEKS-KADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372 (377)
Q Consensus 319 ~~~~~~~~~~~~g-~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L 372 (377)
.....|.++.+.| .+|...|++.|.... +.+.|.|.+++.|+.-|+..|+.-+
T Consensus 516 ~rg~k~El~set~~gs~~~R~v~gV~rvG-~~akG~~~~gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 516 RRGDKYELPSETGTGSHDKRFVKGVMRVG-ILAKGLLLNGDRAVELALLCAEKPT 569 (816)
T ss_pred ccccceecccccCCCCCCceeeeeeeeee-hhhccccccchHHHHHHHHhccCcc
Confidence 5556788888777 778888998888644 7999999999999999999988644
No 40
>KOG3769|consensus
Probab=97.41 E-value=0.00022 Score=66.52 Aligned_cols=78 Identities=23% Similarity=0.206 Sum_probs=69.3
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCeeEeecccCC-CCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcCCC
Q psy5350 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGL-PHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETVPI 238 (377)
Q Consensus 161 ~~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp-~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~ 238 (377)
......+|...|-++|++++...|++.++.++|- ...+.|+|.+.-+.. .+.|.|.|-|.|++.||..+|..+....+
T Consensus 227 ~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp 306 (333)
T KOG3769|consen 227 EMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTP 306 (333)
T ss_pred hhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCCh
Confidence 3456789999999999999999999999988875 467899999999876 59999999999999999999999987664
No 41
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=97.25 E-value=2.3e-05 Score=64.01 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=38.8
Q ss_pred ccccccchhHh--hhhhCCCCceeeecccccc------------------c-----CCCCCcchhhhHHHHH--hhhhcC
Q psy5350 2 ARVSNVSDEVE--DKADINMPSTVSLDCNEVK------------------V-----EENSPSRVLFDNNEIK--QIPKVS 54 (377)
Q Consensus 2 ~~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~------------------~-----~~~~~~~ilaD~~EA~--AiylDs 54 (377)
.|..+||..++ ++.++||.+|++....+.. . .....++++||+|||+ |||+|
T Consensus 34 ~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAiyld- 112 (114)
T PF00636_consen 34 LRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDSESSISYDPKNQVLPPKVLADVFEALIGAIYLD- 112 (114)
T ss_dssp HHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC-------C-SSS--SSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhcccccccCCCccccCCccHHHHHHHHHHHHHHHHh-
Confidence 47788999988 8999999999984211100 0 1112468999999999 99999
Q ss_pred C
Q psy5350 55 T 55 (377)
Q Consensus 55 ~ 55 (377)
+
T Consensus 113 ~ 113 (114)
T PF00636_consen 113 S 113 (114)
T ss_dssp T
T ss_pred c
Confidence 5
No 42
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.28 E-value=0.026 Score=44.26 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=43.1
Q ss_pred HHHHHHHHhhc------CceEEEEeecccCCCCceEEEEEEecC-CceEEEee-cCCHHHHHHHHHHHHHHHHHhhh
Q psy5350 308 ILYLEDLSDEL------KYRVSFVDIEEKSKADGFQSLLQLTTT-PVTVFCGT-GASIEVAKIEAVYRALDFLQIMN 376 (377)
Q Consensus 308 i~~L~el~q~~------~~~~~~~~~~~~g~~~~~~~~v~v~~~-p~~~~~G~-G~tkk~Ak~~AA~~aL~~L~~~~ 376 (377)
|+.|+.+|+.. ...+.|...... ..|.|.|.+=.. |...+.|. -.|++.||+.||..|...|-.|+
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~---~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIG---SGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE-----G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcC---CcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcC
Confidence 67899999854 235677655432 267888887543 55566674 58999999999999999998876
No 43
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.27 E-value=0.024 Score=44.42 Aligned_cols=64 Identities=30% Similarity=0.338 Sum_probs=42.8
Q ss_pred hHHHHHHHHhcCC-----CCCeeEeecccCCCCCceEEEEEEEccE----EEEE-ecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 169 VGQLQEACMTRKW-----PPPVYETEETTGLPHERMFTVCAYVNVY----KEEG-MGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 169 ~~~L~e~~q~~~~-----~~p~y~~~~~~Gp~h~~~F~~~v~v~~~----~~~G-~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
++.|+.||+...- ..|.|.+....+ .|+++|.+-.. ..+| .-.||+.||+.||-.|...|.+..
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS-----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G------EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC-----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcC
Confidence 6789999986432 347888875443 88888887541 2444 358999999999999999998764
No 44
>KOG0921|consensus
Probab=96.15 E-value=0.026 Score=60.33 Aligned_cols=194 Identities=12% Similarity=0.053 Sum_probs=116.2
Q ss_pred ChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEE--EEEecCCHHHHHHHHHHHHHHHhhcCCCCC-Ccc
Q psy5350 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK--EEGMGKSKKIAKREAALNMLKFLETVPIEI-PEK 243 (377)
Q Consensus 167 n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~--~~G~G~sKK~Ak~~AA~~~l~~L~~~~~~~-~~~ 243 (377)
+-+..|..||.++.++ |.|.+- .+|+.....|.|.|.+.+.. ++|...+||.|..+||+.-.+.|-....-+ +.+
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~-~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~ 79 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIR-SEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDI 79 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehh-hhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCC
Confidence 4577899999999998 899887 56777788999999998865 556667799999999999999987643210 111
Q ss_pred CC-----------C---Ccccc----------cccccCCCCCCCccccchhhhhhhhhhhhccccCCCCc---hh---Hh
Q psy5350 244 KQ-----------G---EDVDE----------KGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGP---LL---EK 293 (377)
Q Consensus 244 ~~-----------e---~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~ 293 (377)
.+ + ++... ....++.++.++|--. +.. ....|.. ++ +.
T Consensus 80 p~~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~--d~~----------~~~~g~~~~~~~qkae~ 147 (1282)
T KOG0921|consen 80 PTLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSN--NAY----------QRNEGTHEQYITQKAEE 147 (1282)
T ss_pred cccccccccCcccccccccccccccccccccCCCCCCCcccccccccc--ccc----------ccCCCCCchhHHHHhhh
Confidence 00 0 00000 0111122222222111 000 0000100 00 00
Q ss_pred h-----hc---cCCCCCCCCCHHHHHHHHHhhcCceEEEEeecccCCCCceEEEEEEe-----cCCceEEEeecCCHHHH
Q psy5350 294 L-----LS---TRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLT-----TTPVTVFCGTGASIEVA 360 (377)
Q Consensus 294 ~-----l~---~~~~~~~~~n~i~~L~el~q~~~~~~~~~~~~~~g~~~~~~~~v~v~-----~~p~~~~~G~G~tkk~A 360 (377)
+ +. ...-.....|....|+++-|+......|.... .|+.+...|..+.+ .+.-.+.++.|++|+.|
T Consensus 148 ~~e~ea~d~~~~ihg~wt~eN~K~~ln~~~q~~~~~~~y~~~~-~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~ 226 (1282)
T KOG0921|consen 148 IAESETVDLNAEIHGNWTMENAKKALNEYLQKMRIQDNYKYTI-VGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVA 226 (1282)
T ss_pred hhhhhhhccCccccCCCCcchhHHHHhHHHhhhhhccccceee-cCCccccchhhhHHHhhhhhchhhhhhhccccceec
Confidence 0 00 01122245788999999999887787777765 44454444444433 23335778999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy5350 361 KIEAVYRALDFLQIM 375 (377)
Q Consensus 361 k~~AA~~aL~~L~~~ 375 (377)
-..-|+.....|-.+
T Consensus 227 ~~~ca~s~vrqm~hl 241 (1282)
T KOG0921|consen 227 EASCALSLVRQLFHL 241 (1282)
T ss_pred CcchHHHHHHHHHHH
Confidence 999998887766443
No 45
>PF14954 LIX1: Limb expression 1
Probab=94.00 E-value=0.18 Score=45.25 Aligned_cols=66 Identities=26% Similarity=0.300 Sum_probs=45.7
Q ss_pred CCChHHHHHHHHHhC---C------CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHH
Q psy5350 75 DRTPVSLMQELLSRR---G------TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQ 145 (377)
Q Consensus 75 ~~~pks~L~E~~q~~---~------~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~ 145 (377)
..|-+..|||+=|.. + ..+.|+. .|...|.|+|-|++.|-. ++..--..+||-+|++.||+.||-.
T Consensus 20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs----~ps~~ppyVcyVTLPGGS-CFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 20 DVNVVEALQEFWQMKQSRGADLKSEALVVYES----VPSPSPPYVCYVTLPGGS-CFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred cchHHHHHHHHHHHHHhccccCCCCCeeeeec----cCCCCCCeEEEEeCCCCC-ccCccccCCcHHHHHhhhHHHHHHH
Confidence 457789999976532 2 2445554 455567799999997742 1222235689999999999999864
No 46
>PF14954 LIX1: Limb expression 1
Probab=92.19 E-value=0.36 Score=43.39 Aligned_cols=74 Identities=16% Similarity=-0.089 Sum_probs=50.2
Q ss_pred CCCChhHHHHHHHHhc---CCCCC-eeEeecccCCCCCceEEEEEEEccEEEEE---ecCCHHHHHHHHHHHHHH-Hhhc
Q psy5350 164 VEPNPVGQLQEACMTR---KWPPP-VYETEETTGLPHERMFTVCAYVNVYKEEG---MGKSKKIAKREAALNMLK-FLET 235 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~---~~~~p-~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G---~G~sKK~Ak~~AA~~~l~-~L~~ 235 (377)
...|.+..||||=|.+ +..+| .-.++.+..|...+-|+|-|++-|-.+-| .++||-+|++.||+.||. .+-.
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvfN 98 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVFN 98 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHHh
Confidence 4568999999986532 22222 11222345566667899999998876555 579999999999999984 3444
Q ss_pred CC
Q psy5350 236 VP 237 (377)
Q Consensus 236 ~~ 237 (377)
..
T Consensus 99 Eh 100 (252)
T PF14954_consen 99 EH 100 (252)
T ss_pred cC
Confidence 33
No 47
>KOG0701|consensus
Probab=90.80 E-value=0.2 Score=57.45 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCcchhhhHHHHH--hhhhcCCCCCC--hHHHHhHHhhhcCCCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEE
Q psy5350 35 NSPSRVLFDNNEIK--QIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFK 110 (377)
Q Consensus 35 ~~~~~ilaD~~EA~--AiylDs~~~~g--~~~~~~~~~~~~~~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~ 110 (377)
..-+|.++|++|++ |||+| + | .+.+..- ....+...|.. |..-.+.....|.....- .....-+
T Consensus 1496 ievpKa~gdi~esiagai~~d-s---g~~~~~~~~~---~~a~p~~s~~~---E~~~~h~~~~~~~~~~k~--~d~~~~~ 1563 (1606)
T KOG0701|consen 1496 IEVPKALGDIFESIAGAIKLD-S---GNMMEPCIEK---FWALPPRSPIR---ELLELHPERALFGKCEKV--ADAGKVR 1563 (1606)
T ss_pred cccchhhhhhhhcccceeecC-c---ccccchHhhc---CcCCCCccchh---hhccccceeeccchhhhh--hhccceE
Confidence 34579999999999 99999 5 4 1111100 00111222222 222222222222211110 0012334
Q ss_pred EEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCC
Q psy5350 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150 (377)
Q Consensus 111 ~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~ 150 (377)
++|.+..+ ....|.|.....||..|++.|++.|....
T Consensus 1564 ~tv~~~~~---~~~~~~g~~~~~aK~s~~k~A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1564 VTVDVFNK---EVFAGEGRNYRIAKASAAKAALKLLKKLG 1600 (1606)
T ss_pred EEEEeccc---chhhhcchhhhhhhhhHHHHHHHHHHHhh
Confidence 44545554 45678899999999999999999887654
No 48
>KOG2334|consensus
Probab=78.94 E-value=0.75 Score=45.59 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 75 DRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 75 ~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
+.+|+..|..||-+.+ ..|.|+++.. .++.|...+.+.|.. +...=+-+++|.|+|.||..+|......
T Consensus 374 ~~~~k~~l~~~~~~~~~~~~~ye~~~~----~d~lf~si~~~~~~~--~~ssi~~~n~k~aeq~aa~~~l~~s~l~ 443 (477)
T KOG2334|consen 374 WDTPKMVLADLCVKTKANGPVYETVQR----TDKLFSSIATARGQK--YNSSIWSPNKKSAEQDAAIVALRKSNLW 443 (477)
T ss_pred CCCHHHHHHHhhhhhcCCCcchhhhhh----hhhhhHHHhhhhhhh--hhccccCcchhhHHHHHHHHHHHhcCcc
Confidence 4789999999999885 6789998764 257899999998873 4455567899999999999999987643
No 49
>KOG2334|consensus
Probab=64.71 E-value=3.1 Score=41.39 Aligned_cols=69 Identities=26% Similarity=0.319 Sum_probs=56.5
Q ss_pred CCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEE-EEE-ecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEG-MGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 165 ~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G-~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
...|+..|..+|.+.+.+.|.|+++.. ..+.|...|++++.. ..+ .-+++|.|.|.||..+|.......
T Consensus 374 ~~~~k~~l~~~~~~~~~~~~~ye~~~~----~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~e 444 (477)
T KOG2334|consen 374 WDTPKMVLADLCVKTKANGPVYETVQR----TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLWE 444 (477)
T ss_pred CCCHHHHHHHhhhhhcCCCcchhhhhh----hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcch
Confidence 368999999999999999999999864 357899889988864 223 448999999999999998876544
No 50
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=55.73 E-value=24 Score=24.37 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=20.1
Q ss_pred EEEecCCceEEEeecCCHHHHHHHHH
Q psy5350 340 LQLTTTPVTVFCGTGASIEVAKIEAV 365 (377)
Q Consensus 340 v~v~~~p~~~~~G~G~tkk~Ak~~AA 365 (377)
++..+....+|.|.|.|..+|++.|-
T Consensus 29 vef~tgkllVcigFGDTl~~A~~kay 54 (60)
T PF04694_consen 29 VEFKTGKLLVCIGFGDTLFEAEQKAY 54 (60)
T ss_pred EEEecCcEEEEEecchHHHHHHHhhh
Confidence 34445556799999999999998764
No 51
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=48.75 E-value=1.5e+02 Score=25.37 Aligned_cols=67 Identities=22% Similarity=0.408 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHhCCCCCeEEEEee-----------eCCCCCC-------eEEEEEEECCccceeEEEe--eccchhHHH
Q psy5350 76 RTPVSLMQELLSRRGTAPKYELIQI-----------EGAINEP-------IFKYRISLTSESRLYVAIG--SGKSKKEAK 135 (377)
Q Consensus 76 ~~pks~L~E~~q~~~~~p~Y~~~~~-----------~G~~h~~-------~F~~~v~v~~~~~~~~~~g--~G~sKK~Ae 135 (377)
..|...|..+.......|.|++++. .|..|.+ .-.|.|.+++- ..|.| .|.++..|+
T Consensus 14 ~a~~~~L~~~~~~l~~~~~~~~lr~Pe~GLvmvr~R~g~~g~~FnLGEv~VTr~~V~l~~g---~~G~~~v~G~d~~~A~ 90 (146)
T PF06754_consen 14 RAPAEELEALAAALEPQPQVQVLRPPETGLVMVRGRDGGTGSPFNLGEVTVTRCAVRLEDG---TVGYGYVLGRDKRHAE 90 (146)
T ss_pred hCCHHHHHHHHHhcccCCCceEeecCCcceEEEEEEecCCCCceecceEEEEEEEEEeCCC---CEEEEEEcCCCHHHHH
Confidence 3466888888888777788887752 2333332 45677778742 34444 589999999
Q ss_pred HHHHHHHHHH
Q psy5350 136 HNAAKSVLDQ 145 (377)
Q Consensus 136 ~~AA~~aL~~ 145 (377)
..|--+|+-.
T Consensus 91 ~~Av~DAllq 100 (146)
T PF06754_consen 91 LAAVIDALLQ 100 (146)
T ss_pred HHHHHHHHhC
Confidence 9998888764
No 52
>COG1944 Uncharacterized conserved protein [Function unknown]
Probab=48.53 E-value=83 Score=31.52 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCceEEEEeeccc--CCCCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHHH
Q psy5350 307 PILYLEDLSDELKYRVSFVDIEEK--SKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQ 373 (377)
Q Consensus 307 ~i~~L~el~q~~~~~~~~~~~~~~--g~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L~ 373 (377)
-+..++.+++..|+.-.....-.+ |.+ ..+.++....+..+..|.|.|++.|+..|...+++.+.
T Consensus 19 t~~~~q~~l~~~gitrI~~~t~Ld~~gIP--v~~a~rp~~~~~~~~~GKGat~~~A~vSAimE~~Er~s 85 (398)
T COG1944 19 TLAAFQPLLAALGITRIEDITWLDRLGIP--VVWAVRPRALGLSVSQGKGATKAAARVSALMEALERLS 85 (398)
T ss_pred HHHHHHHHHHhcCceeeeeeeccccCCCc--eEEEeeeccccceeecCCCCCHHHHHHHHHHHHHHHhh
Confidence 466677777777876333322112 222 34555555555668889999999999999999998653
No 53
>KOG0701|consensus
Probab=42.17 E-value=26 Score=41.02 Aligned_cols=74 Identities=22% Similarity=0.222 Sum_probs=56.4
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEc--------------c-EEEEEecCCHHHHHHHHHHH
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN--------------V-YKEEGMGKSKKIAKREAALN 228 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~--------------~-~~~~G~G~sKK~Ak~~AA~~ 228 (377)
......+.+++.|....|+.|.+..+.+.++.|..++....... . ....|.|...+.||..||+.
T Consensus 1512 ai~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s~~k~ 1591 (1606)
T KOG0701|consen 1512 AIKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKASAAKA 1591 (1606)
T ss_pred eeecCcccccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhhHHHH
Confidence 34556668999999999999999999999988887765443321 1 12567788899999988888
Q ss_pred HHHHhhcCC
Q psy5350 229 MLKFLETVP 237 (377)
Q Consensus 229 ~l~~L~~~~ 237 (377)
+++.|....
T Consensus 1592 A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1592 ALKLLKKLG 1600 (1606)
T ss_pred HHHHHHHhh
Confidence 888886643
No 54
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=41.74 E-value=35 Score=25.97 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.5
Q ss_pred eEEEeecCCHHHHHHHHHHHHHHHHH
Q psy5350 348 TVFCGTGASIEVAKIEAVYRALDFLQ 373 (377)
Q Consensus 348 ~~~~G~G~tkk~Ak~~AA~~aL~~L~ 373 (377)
++..|.|.+.+.|+.+|-.++.+.|.
T Consensus 14 l~a~G~~~~~~~A~~~A~~~la~~i~ 39 (92)
T PF02169_consen 14 LYAVGSGSSREQAKQDALANLAEQIS 39 (92)
T ss_pred EEEEEcccChHHHHHHHHHHHHHhee
Confidence 46679999999999999888887653
No 55
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=40.45 E-value=36 Score=25.92 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=22.6
Q ss_pred eEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 122 YVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 122 ~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
+.+.|.|.+.+.|+++|-..+.+.+..
T Consensus 14 l~a~G~~~~~~~A~~~A~~~la~~i~~ 40 (92)
T PF02169_consen 14 LYAVGSGSSREQAKQDALANLAEQISV 40 (92)
T ss_pred EEEEEcccChHHHHHHHHHHHHHheeE
Confidence 778999999999999888888776653
No 56
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S5 is one of the proteins from the small ribosomal subunit, and is a protein of 166 to 254 amino-acid residues. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial, cyanelle, red algal chloroplast, archaeal and fungal mitochondrial S5; mammalian, Caenorhabditis elegans, Drosophila and plant S2; and yeast S4 (SUP44). This entry represents the N-terminal domain of ribosomal protein S5, which has an alpha-beta(3)-alpha structure that folds into two layers, alpha/beta.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_e 2XZN_E 2XZM_E 3O30_B 1S1H_E 3IZB_E 3U5C_C 3U5G_C 3O2Z_B 3BBN_E ....
Probab=36.26 E-value=69 Score=23.48 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCeEEEEEEECCccceeEE--EeeccchhHHHHHHHHHHHHHHh
Q psy5350 106 EPIFKYRISLTSESRLYVA--IGSGKSKKEAKHNAAKSVLDQLI 147 (377)
Q Consensus 106 ~~~F~~~v~v~~~~~~~~~--~g~G~sKK~Ae~~AA~~aL~~L~ 147 (377)
...|.+-|.+++..+ .+| .|.+..-..|-+.|-+.|.+.|.
T Consensus 21 ~~~~~alvvvGn~~G-~vG~G~gKa~~~~~Ai~kA~~~A~knl~ 63 (67)
T PF00333_consen 21 IFSFRALVVVGNGNG-LVGFGVGKAKEVPDAIRKAKRKAKKNLI 63 (67)
T ss_dssp EEEEEEEEEEECSSS-EEEEEEEEESSHHHHHHHHHHHHHCSEE
T ss_pred eeEEEEEEEEecCCC-cEecCcccchhHHHHHHHHHHHHHhCCE
Confidence 457888888876543 444 45555557788888888877654
No 57
>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.
Probab=27.82 E-value=2.9e+02 Score=23.58 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhcCceEEEEeecc
Q psy5350 307 PILYLEDLSDELKYRVSFVDIEE 329 (377)
Q Consensus 307 ~i~~L~el~q~~~~~~~~~~~~~ 329 (377)
.+.+||+++=-.|++.++..++.
T Consensus 38 vi~~aN~vfGfngWs~~i~~~~~ 60 (154)
T PF04098_consen 38 VIELANEVFGFNGWSSEIISLEQ 60 (154)
T ss_dssp HHHHHHHHH-TTTEEEEEEEEEE
T ss_pred HHHHHHHHhCcCCCceEEEeeEe
Confidence 58899999877888888877653
No 58
>PF12909 DUF3832: Protein of unknown function (DUF3832); InterPro: IPR024308 This domain found in bacteria and Acanthamoeba polyphaga mimivirus (APMV) L591 protein has no known function. In Q0AZ30 from SWISSPROT and other uncharacterised proteins this domain is found C-terminal, while the N terminus shows remote homology to the bacterial toxin/antitoxin 'addiction module' (PF12910 from PFAM).; PDB: 3K6Q_C.
Probab=26.28 E-value=2.6e+02 Score=21.80 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=25.4
Q ss_pred EEEEecCCceEEEeecCCHHHHHHHHHHHHHHHH
Q psy5350 339 LLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372 (377)
Q Consensus 339 ~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L 372 (377)
.+.+...+ ..|.|+|.++|..+.+.+++.+=
T Consensus 20 ~~~l~~ld---i~~~g~T~eeA~~~lie~l~dYA 50 (89)
T PF12909_consen 20 TVSLPELD---IYANGPTLEEAIEDLIEDLRDYA 50 (89)
T ss_dssp EEEECCGT---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEecCee---EEecCCCHHHHHHHHHHHHHHHH
Confidence 66776554 56999999999999999998764
No 59
>COG3624 PhnG Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=26.13 E-value=3.9e+02 Score=22.72 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCeEEEEeeeCCCC--------------------CCeEEEEEEECC----ccceeEEEeeccchhHHH
Q psy5350 80 SLMQELLSRRGTAPKYELIQIEGAIN--------------------EPIFKYRISLTS----ESRLYVAIGSGKSKKEAK 135 (377)
Q Consensus 80 s~L~E~~q~~~~~p~Y~~~~~~G~~h--------------------~~~F~~~v~v~~----~~~~~~~~g~G~sKK~Ae 135 (377)
++|--+.+..+..|+|++++ +|+. .-.-.|.|.+.+ . -.+.--|++|+.||
T Consensus 21 ~eL~a~~~~l~~~~~~e~lR--~pEtGLvmvrgr~GGtG~~FnlGE~TvTRa~VrL~~~~~~v---Gh~yv~Grdk~~Ae 95 (151)
T COG3624 21 EELEALWNALNLSPQYEVLR--APETGLVMVRGRMGGTGEPFNLGEATVTRATVRLEDGTGTV---GHGYVLGRDKRHAE 95 (151)
T ss_pred HHHHHHHHHccCCccceeee--ccccchhhhhhhccCCCCccccccceEEEEEEEccCCCccc---ceeeeecCChhHhH
Q ss_pred HHHHHHHH
Q psy5350 136 HNAAKSVL 143 (377)
Q Consensus 136 ~~AA~~aL 143 (377)
-.|--+||
T Consensus 96 laAi~DAL 103 (151)
T COG3624 96 LAALIDAL 103 (151)
T ss_pred HHHHHHHH
No 60
>PRK04044 rps5p 30S ribosomal protein S5P; Reviewed
Probab=24.34 E-value=1.7e+02 Score=26.64 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=28.6
Q ss_pred CCeEEEEEEECCccceeEEEeeccch--hHHHHHHHHHHHHHHh
Q psy5350 106 EPIFKYRISLTSESRLYVAIGSGKSK--KEAKHNAAKSVLDQLI 147 (377)
Q Consensus 106 ~~~F~~~v~v~~~~~~~~~~g~G~sK--K~Ae~~AA~~aL~~L~ 147 (377)
...|.+-|.|++.++ .+|.|.|.++ ..|-+.|.++|.+.|.
T Consensus 69 ~~sf~alVvVGn~~G-~vG~G~GKa~ev~~Ai~kA~~~Akknli 111 (211)
T PRK04044 69 RVRFRVVVVVGNRDG-YVGVGQGKAKQVGPAIRKAIRNAKLNII 111 (211)
T ss_pred EEEEEEEEEEeCCCC-eEeeeeeeccchHHHHHHHHHHHHhCeE
Confidence 457888888876643 5666666665 5677788777776554
No 61
>CHL00138 rps5 ribosomal protein S5; Validated
Probab=22.24 E-value=2.6e+02 Score=23.79 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=28.6
Q ss_pred CCeEEEEEEECCccceeEEEeeccc--hhHHHHHHHHHHHHHHh
Q psy5350 106 EPIFKYRISLTSESRLYVAIGSGKS--KKEAKHNAAKSVLDQLI 147 (377)
Q Consensus 106 ~~~F~~~v~v~~~~~~~~~~g~G~s--KK~Ae~~AA~~aL~~L~ 147 (377)
...|.+-|.|++.++ .+|.|.|.+ -.+|-+.|...|.+.|.
T Consensus 43 ~~~f~alvvvGn~~G-~vG~G~GKa~ev~~Ai~KA~~~Akknl~ 85 (143)
T CHL00138 43 KLSFRAIVVIGNENG-WVGVGVGKADDVQNAVKKAVTDAKKNLI 85 (143)
T ss_pred EEEEEEEEEEECCCC-eEEEeeEecchHHHHHHHHHHHHHhCeE
Confidence 457888888876643 555555555 46788888888877765
No 62
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=22.11 E-value=94 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=17.6
Q ss_pred EEEeecCCHHHHHHHHHHHHHHH
Q psy5350 349 VFCGTGASIEVAKIEAVYRALDF 371 (377)
Q Consensus 349 ~~~G~G~tkk~Ak~~AA~~aL~~ 371 (377)
.++|.|.++.+|...|...=+..
T Consensus 38 k~~~LG~d~~~Ai~~A~eaN~~i 60 (75)
T PF09003_consen 38 KEHGLGTDRAEAIAQAIEANLRI 60 (75)
T ss_dssp -EEEEES-HHHHHHHHHHHHHHH
T ss_pred ceeeCCCCHHHHHHHHHHHHHHH
Confidence 68899999999999998765544
No 63
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=22.06 E-value=1.2e+02 Score=22.09 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhcCceEEEEeec
Q psy5350 307 PILYLEDLSDELKYRVSFVDIE 328 (377)
Q Consensus 307 ~i~~L~el~q~~~~~~~~~~~~ 328 (377)
.|.+|++|++..+|+.++..++
T Consensus 22 ciDll~~la~~l~F~y~i~~~~ 43 (65)
T PF10613_consen 22 CIDLLEELAEELNFTYEIYLVP 43 (65)
T ss_dssp HHHHHHHHHHHHT-EEEEEE-T
T ss_pred HHHHHHHHHHHcCCeEEEEECC
Confidence 5899999999999998888775
No 64
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=21.57 E-value=2.5e+02 Score=18.48 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=14.2
Q ss_pred EEeeccchhHHHHHHHHHHHHHH
Q psy5350 124 AIGSGKSKKEAKHNAAKSVLDQL 146 (377)
Q Consensus 124 ~~g~G~sKK~Ae~~AA~~aL~~L 146 (377)
..+-..+|++|+..+++ ++..+
T Consensus 20 ~k~GF~TkkeA~~~~~~-~~~~~ 41 (46)
T PF14657_consen 20 TKRGFKTKKEAEKALAK-IEAEL 41 (46)
T ss_pred EcCCCCcHHHHHHHHHH-HHHHH
Confidence 33446899999887666 44433
No 65
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type. This model finds chloroplast ribosomal protein S5 as well as bacterial ribosomal protein S5. A candidate mitochondrial form (Saccharomyces cerevisiae YBR251W and its homolog) differs substantially and is not included in this model.
Probab=21.01 E-value=2.7e+02 Score=24.02 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCeEEEEEEECCccceeEEEeeccch--hHHHHHHHHHHHHHHh
Q psy5350 106 EPIFKYRISLTSESRLYVAIGSGKSK--KEAKHNAAKSVLDQLI 147 (377)
Q Consensus 106 ~~~F~~~v~v~~~~~~~~~~g~G~sK--K~Ae~~AA~~aL~~L~ 147 (377)
...|.+-|.|++.++ .+|.|.|.++ ..|-+.|.+.|.+.|.
T Consensus 21 ~~sf~alvvvGn~~G-~vG~G~GKa~ev~~Ai~kA~~~Ak~nl~ 63 (154)
T TIGR01021 21 RFSFSALVVVGDGKG-RVGFGFGKAKEVPDAIKKAVEKARKNLI 63 (154)
T ss_pred EEEEEEEEEEECCCC-eEeeeeeecchHHHHHHHHHHHHHhCeE
Confidence 457888888876543 5566655555 6788888888877665
No 66
>CHL00138 rps5 ribosomal protein S5; Validated
Probab=20.57 E-value=2.4e+02 Score=23.98 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=31.3
Q ss_pred CCCceEEEEEEEcc---EEEEEecCCH--HHHHHHHHHHHHHHhhcCC
Q psy5350 195 PHERMFTVCAYVNV---YKEEGMGKSK--KIAKREAALNMLKFLETVP 237 (377)
Q Consensus 195 ~h~~~F~~~v~v~~---~~~~G~G~sK--K~Ak~~AA~~~l~~L~~~~ 237 (377)
.....|.+-|.+++ ..+.|.|+++ ..|-+.|...|...|..-+
T Consensus 41 GR~~~f~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknl~~V~ 88 (143)
T CHL00138 41 GKKLSFRAIVVIGNENGWVGVGVGKADDVQNAVKKAVTDAKKNLITIP 88 (143)
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEecchHHHHHHHHHHHHHhCeEEEE
Confidence 35567777777874 5666666554 8899999999988887654
No 67
>PRK00550 rpsE 30S ribosomal protein S5; Validated
Probab=20.13 E-value=2.8e+02 Score=24.27 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=28.6
Q ss_pred CCeEEEEEEECCccceeEEEeeccch--hHHHHHHHHHHHHHHh
Q psy5350 106 EPIFKYRISLTSESRLYVAIGSGKSK--KEAKHNAAKSVLDQLI 147 (377)
Q Consensus 106 ~~~F~~~v~v~~~~~~~~~~g~G~sK--K~Ae~~AA~~aL~~L~ 147 (377)
...|.+-|.|++..+ .+|.|.|.++ ..|-+.|...|.+.|.
T Consensus 32 ~~~f~alvvvGn~~G-~vG~G~gKa~ev~~Ai~kA~~~A~~nl~ 74 (168)
T PRK00550 32 RFSFSALVVVGDGKG-RVGFGYGKAREVPEAIRKAVEDAKKNMI 74 (168)
T ss_pred EEEEEEEEEEECCCC-eEeeeeeecchHHHHHHHHHHHHHhCEE
Confidence 457888888876644 5555555544 6788888888877665
No 68
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=20.05 E-value=93 Score=31.72 Aligned_cols=53 Identities=6% Similarity=0.033 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHhhcCceEEEEeecccCCCC--ceEEEEEEecCCceEEEeecCC
Q psy5350 303 EVEDPILYLEDLSDELKYRVSFVDIEEKSKAD--GFQSLLQLTTTPVTVFCGTGAS 356 (377)
Q Consensus 303 ~~~n~i~~L~el~q~~~~~~~~~~~~~~g~~~--~~~~~v~v~~~p~~~~~G~G~t 356 (377)
+...|...++++|+++++-+.+.++- .|..+ ..+..-.....|-++|.|.|-|
T Consensus 233 pp~~Yl~~vr~iC~ky~ILlI~DEV~-tGFGRTG~~FA~e~~gi~PDi~~~aKGLT 287 (449)
T COG0161 233 PPPGYLKRVREICDKYGILLIADEVA-TGFGRTGKMFACEHAGIVPDILCLAKGLT 287 (449)
T ss_pred CChHHHHHHHHHHHHcCcEEEeecce-eCCCcCchhhhhhhcCCCCCeeeeccccc
Confidence 56689999999999999999999875 45443 3333334456677888887743
Done!