Query psy5350
Match_columns 377
No_of_seqs 332 out of 2544
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 00:21:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qu6_A Protein kinase PKR; dsR 100.0 9E-34 3.1E-38 250.7 17.8 161 72-237 9-174 (179)
2 2yt4_A Protein DGCR8; DSRBD, R 100.0 5.6E-30 1.9E-34 234.8 18.6 156 73-236 19-199 (232)
3 1qu6_A Protein kinase PKR; dsR 100.0 7.8E-28 2.7E-32 212.6 18.3 162 163-374 10-172 (179)
4 2l3j_A Double-stranded RNA-spe 100.0 5.8E-27 2E-31 215.5 21.9 153 75-237 3-227 (236)
5 1o0w_A Ribonuclease III, RNAse 99.9 6.4E-27 2.2E-31 217.7 10.8 140 3-149 97-250 (252)
6 3n3w_A Ribonuclease III; nucle 99.9 6.1E-28 2.1E-32 223.7 0.1 139 3-148 95-247 (248)
7 2nug_A Ribonuclease III, RNAse 99.9 3.9E-25 1.3E-29 201.8 12.7 131 3-147 71-218 (221)
8 2a11_A Ribonuclease III, RNAse 99.9 1.7E-26 5.8E-31 213.7 0.7 140 3-150 77-233 (242)
9 2yt4_A Protein DGCR8; DSRBD, R 99.9 8.6E-24 2.9E-28 193.7 17.6 177 162-374 18-198 (232)
10 2l3j_A Double-stranded RNA-spe 99.9 4.8E-21 1.6E-25 176.0 23.3 204 165-375 3-226 (236)
11 3rv0_A K. polysporus DCR1; RNA 99.8 1.2E-22 4.2E-27 195.5 1.9 138 3-149 164-321 (341)
12 3c4b_A Endoribonuclease dicer; 99.8 1.2E-20 4E-25 176.8 7.4 133 3-148 85-263 (265)
13 3adl_A RISC-loading complex su 99.8 1.1E-19 3.8E-24 141.1 11.3 78 161-238 10-87 (88)
14 3llh_A RISC-loading complex su 99.8 1.3E-19 4.5E-24 141.5 10.2 75 72-150 10-84 (90)
15 3adj_A F21M12.9 protein; HYL1, 99.8 2.1E-19 7.3E-24 136.0 9.3 70 76-148 4-74 (76)
16 2dix_A Interferon-inducible do 99.8 5.4E-19 1.8E-23 136.2 11.4 72 74-149 6-77 (84)
17 3adl_A RISC-loading complex su 99.8 6.1E-19 2.1E-23 136.9 11.7 75 72-150 11-86 (88)
18 1di2_A XLRBPA, double stranded 99.8 3.5E-19 1.2E-23 132.3 9.1 67 168-234 2-68 (69)
19 3adg_A F21M12.9 protein; HYL1, 99.8 6.8E-19 2.3E-23 132.2 10.3 69 75-147 2-72 (73)
20 2cpn_A TAR RNA-binding protein 99.8 8.1E-19 2.8E-23 136.6 11.0 74 163-236 13-86 (89)
21 1uhz_A Staufen (RNA binding pr 99.8 1.3E-18 4.4E-23 135.4 11.1 72 164-235 4-75 (89)
22 1di2_A XLRBPA, double stranded 99.8 8.1E-19 2.8E-23 130.3 9.5 67 77-147 1-68 (69)
23 2khx_A Ribonuclease 3; drosha, 99.8 2.9E-19 1E-23 137.8 6.8 72 76-150 1-78 (85)
24 2cpn_A TAR RNA-binding protein 99.8 2E-18 6.7E-23 134.4 11.4 72 74-149 14-86 (89)
25 1ekz_A DSRBDIII, maternal effe 99.8 2.6E-19 8.7E-24 135.6 6.2 72 73-148 4-75 (76)
26 1uhz_A Staufen (RNA binding pr 99.8 2.3E-18 7.7E-23 134.0 11.6 72 74-149 4-76 (89)
27 2b7t_A Double-stranded RNA-spe 99.8 1.5E-18 5.2E-23 130.2 10.2 70 75-149 3-72 (73)
28 3adj_A F21M12.9 protein; HYL1, 99.8 7.1E-19 2.4E-23 133.1 8.3 71 165-235 3-74 (76)
29 1x49_A Interferon-induced, dou 99.8 9.1E-19 3.1E-23 138.4 9.2 74 74-150 12-85 (97)
30 1ekz_A DSRBDIII, maternal effe 99.8 3.7E-19 1.3E-23 134.7 6.3 72 163-235 4-75 (76)
31 2dix_A Interferon-inducible do 99.8 2.9E-18 1E-22 132.1 11.0 74 163-237 5-78 (84)
32 3adg_A F21M12.9 protein; HYL1, 99.8 2.3E-18 7.7E-23 129.3 9.5 68 166-234 3-72 (73)
33 1whq_A RNA helicase A; double- 99.7 2.7E-18 9.1E-23 136.2 8.7 71 75-149 5-76 (99)
34 1t4n_A Ribonuclease III; DSRBD 99.7 1.1E-18 3.9E-23 135.8 6.4 72 73-147 3-74 (94)
35 3llh_A RISC-loading complex su 99.7 4.2E-18 1.5E-22 132.9 9.6 75 162-237 10-84 (90)
36 2b7t_A Double-stranded RNA-spe 99.7 3.7E-18 1.3E-22 128.1 8.9 70 165-236 3-72 (73)
37 1x48_A Interferon-induced, dou 99.7 8.1E-18 2.8E-22 130.7 10.0 71 75-150 5-76 (88)
38 2dmy_A Spermatid perinuclear R 99.7 7E-18 2.4E-22 133.4 9.8 72 72-148 12-83 (97)
39 2khx_A Ribonuclease 3; drosha, 99.7 3.9E-18 1.3E-22 131.5 8.0 71 166-236 1-77 (85)
40 1t4o_A Ribonuclease III; RNT1P 99.7 6E-18 2E-22 136.2 8.5 73 72-147 4-76 (117)
41 2l33_A Interleukin enhancer-bi 99.7 1.1E-17 3.8E-22 130.2 9.0 71 75-150 13-83 (91)
42 2l2n_A Hyponastic leave 1; DSR 99.7 1.3E-17 4.5E-22 133.3 8.9 74 72-149 13-88 (103)
43 1x49_A Interferon-induced, dou 99.7 1.8E-17 6.2E-22 130.9 9.2 74 163-237 11-85 (97)
44 1x47_A DGCR8 protein; structur 99.7 5.7E-17 2E-21 128.4 10.4 72 73-149 13-85 (98)
45 2dmy_A Spermatid perinuclear R 99.7 8.5E-17 2.9E-21 127.2 11.1 72 162-235 12-83 (97)
46 2l33_A Interleukin enhancer-bi 99.7 4.8E-17 1.6E-21 126.6 9.3 72 165-238 13-84 (91)
47 1uil_A Double-stranded RNA-bin 99.7 2.8E-17 9.5E-22 133.4 8.2 72 75-150 25-101 (113)
48 2ljh_A Double-stranded RNA-spe 99.7 5.2E-17 1.8E-21 131.4 9.7 71 72-150 33-103 (114)
49 2l2n_A Hyponastic leave 1; DSR 99.7 3.3E-17 1.1E-21 131.0 8.3 75 162-237 13-89 (103)
50 1whq_A RNA helicase A; double- 99.7 4.4E-17 1.5E-21 129.1 8.5 71 165-237 5-77 (99)
51 1x48_A Interferon-induced, dou 99.7 2E-16 7E-21 122.7 11.1 73 164-239 4-78 (88)
52 2b7v_A Double-stranded RNA-spe 99.7 1.6E-16 5.5E-21 118.5 9.8 67 74-148 2-68 (71)
53 2b7v_A Double-stranded RNA-spe 99.7 2.9E-16 9.9E-21 117.1 9.0 67 164-235 2-68 (71)
54 1x47_A DGCR8 protein; structur 99.7 5.4E-16 1.8E-20 122.8 11.1 72 163-236 13-85 (98)
55 1uil_A Double-stranded RNA-bin 99.6 2.8E-16 9.6E-21 127.5 8.0 73 163-237 23-101 (113)
56 1t4n_A Ribonuclease III; DSRBD 99.6 2E-16 6.7E-21 123.1 6.1 70 164-235 4-75 (94)
57 2ljh_A Double-stranded RNA-spe 99.6 6.9E-16 2.3E-20 124.8 9.0 71 162-237 33-103 (114)
58 3p1x_A Interleukin enhancer-bi 99.6 1.5E-15 5.2E-20 114.3 10.1 69 73-149 4-72 (75)
59 1whn_A Hypothetical protein ri 99.6 8.7E-16 3E-20 126.9 9.0 71 73-149 23-95 (128)
60 3p1x_A Interleukin enhancer-bi 99.6 1.6E-15 5.6E-20 114.1 9.5 70 163-237 4-73 (75)
61 1t4o_A Ribonuclease III; RNT1P 99.6 9.6E-16 3.3E-20 123.4 7.7 70 164-235 6-77 (117)
62 1whn_A Hypothetical protein ri 99.6 6.5E-15 2.2E-19 121.7 9.1 71 163-236 23-95 (128)
63 2nug_A Ribonuclease III, RNAse 99.5 5.4E-14 1.9E-18 127.9 8.6 71 165-235 149-219 (221)
64 1o0w_A Ribonuclease III, RNAse 99.4 1.9E-13 6.7E-18 126.6 9.7 74 163-236 176-250 (252)
65 3n3w_A Ribonuclease III; nucle 99.4 8.7E-14 3E-18 128.6 0.5 72 164-235 175-247 (248)
66 2a11_A Ribonuclease III, RNAse 99.3 4.6E-13 1.6E-17 123.4 0.0 73 164-237 160-233 (242)
67 2qvw_A GLP_546_48378_50642; di 98.9 3.3E-10 1.1E-14 119.3 2.5 108 3-150 369-499 (756)
68 3rv0_A K. polysporus DCR1; RNA 98.8 2.9E-10 1E-14 109.2 0.0 69 163-236 251-321 (341)
69 3o2r_A Ribonuclease III; struc 98.8 1.2E-09 4.1E-14 94.9 0.7 60 3-66 95-158 (170)
70 3c4b_A Endoribonuclease dicer; 98.5 2E-07 7E-12 86.6 6.9 63 166-235 200-263 (265)
71 1u61_A Hypothetical protein; s 98.4 5.9E-08 2E-12 80.9 2.4 60 3-66 46-121 (138)
72 3rv1_A K. polysporus DCR1; RNA 98.1 5.6E-07 1.9E-11 82.3 1.1 63 3-66 164-231 (246)
73 2gsl_A Hypothetical protein; a 98.0 1.8E-06 6.2E-11 71.7 1.6 60 3-66 48-121 (137)
74 2qvw_A GLP_546_48378_50642; di 97.8 3.4E-06 1.2E-10 88.8 0.7 56 3-66 682-743 (756)
75 2kou_A Dicer-like protein 4; A 96.2 0.011 3.9E-07 46.3 6.7 70 306-376 5-82 (102)
76 2kou_A Dicer-like protein 4; A 95.5 0.058 2E-06 42.1 8.2 71 76-150 4-82 (102)
77 2db2_A KIAA0890 protein; DSRM 95.3 0.049 1.7E-06 42.6 7.0 45 333-377 48-92 (119)
78 2db2_A KIAA0890 protein; DSRM 94.9 0.04 1.4E-06 43.1 5.3 75 74-152 15-93 (119)
79 3htx_A HEN1; HEN1, small RNA m 93.7 0.12 4.1E-06 54.8 7.6 71 74-150 15-97 (950)
80 3htx_A HEN1; HEN1, small RNA m 74.6 3.4 0.00012 43.9 5.5 71 164-238 15-98 (950)
81 3k6q_A Putative ligand binding 65.2 25 0.00087 28.5 7.6 56 308-373 41-96 (139)
82 3k6q_A Putative ligand binding 49.1 36 0.0012 27.6 5.9 59 167-235 39-97 (139)
83 2dsy_A Hypothetical protein TT 42.3 42 0.0014 24.7 5.1 58 310-374 6-63 (87)
84 1j5u_A Archease, possible chap 25.0 72 0.0025 25.7 4.1 25 348-372 23-47 (136)
No 1
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=100.00 E-value=9e-34 Score=250.69 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=139.1
Q ss_pred CCCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCCC
Q psy5350 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDD 151 (377)
Q Consensus 72 ~~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~~ 151 (377)
+....|||+.||||||+++..|.|+++.+.||+|.+.|+|+|.|+|. .++.|.|.|||+|||.||+.||+.|.....
T Consensus 9 ~~~~~n~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~---~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~ 85 (179)
T 1qu6_A 9 DLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGR---EFPEGEGRSKKEAKNAAAKLAVEILNKEKK 85 (179)
T ss_dssp CSSSCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSS---CCCEEECCSSHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCCCHHHHHHHHHHhCCCCCeEEEeeccCCCCCCeEEEEEEECCE---EEEecCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 34567999999999999986799999999999999999999999997 789999999999999999999999986543
Q ss_pred ccccc----cccCCCCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHH
Q psy5350 152 EKLMC----QKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAA 226 (377)
Q Consensus 152 ~~~~~----~~~~~~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA 226 (377)
+..+. .....+....||++.||||||+++|++ .|++. ++||+|.+.|+++|.|++. .++|.|+|||+||++||
T Consensus 86 ~~~p~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~-~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA 163 (179)
T 1qu6_A 86 AVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAA 163 (179)
T ss_dssp CCSCSSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEE-EECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHH
T ss_pred cCCCccCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEec-CcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHH
Confidence 21110 011123456899999999999999987 99975 7899999999999999997 48999999999999999
Q ss_pred HHHHHHhhcCC
Q psy5350 227 LNMLKFLETVP 237 (377)
Q Consensus 227 ~~~l~~L~~~~ 237 (377)
+.||..|....
T Consensus 164 ~~al~~L~~~~ 174 (179)
T 1qu6_A 164 KLAYLQILSEE 174 (179)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhccc
Confidence 99999997654
No 2
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=5.6e-30 Score=234.85 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=126.6
Q ss_pred CCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCCC
Q psy5350 73 TGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDD 151 (377)
Q Consensus 73 ~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~~ 151 (377)
...+|||+.||||||+++ ..|.|+++..+||+ +.|+|.|.|+|. .++.|.|.|||+|||.||+.||..|.....
T Consensus 19 ~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~---~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 93 (232)
T 2yt4_A 19 PNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGV---TYGSGTASSKKLAKNKAARATLEILIPDFV 93 (232)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTE---EEEEEEESSHHHHHHHHHHHHHHHHSTTTT
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCE---EEeecCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 456899999999999996 57999999999998 999999999997 789999999999999999999999986421
Q ss_pred c-ccc---cc------------ccC------CCCCCCChhHHHHHHHHhcCCCCCeeE--eecccCCCCCceEEEEEEEc
Q psy5350 152 E-KLM---CQ------------KEN------LFKVEPNPVGQLQEACMTRKWPPPVYE--TEETTGLPHERMFTVCAYVN 207 (377)
Q Consensus 152 ~-~~~---~~------------~~~------~~~~~~n~~~~L~e~~q~~~~~~p~y~--~~~~~Gp~h~~~F~~~v~v~ 207 (377)
. .+. +. .++ ......||++.||| |+++++++|.|. ++.+.||+|.+.|+|+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~-- 170 (232)
T 2yt4_A 94 KQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG-- 170 (232)
T ss_dssp TC--------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--
T ss_pred ccCCccccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--
Confidence 1 000 00 000 01235699999999 999999999999 777899999999998887
Q ss_pred cEEEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 208 VYKEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 208 ~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
+..+.|.|+|||+||+.||+.||..|...
T Consensus 171 ~~~~~G~G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 171 KHTVRGWCKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999754
No 3
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.96 E-value=7.8e-28 Score=212.59 Aligned_cols=162 Identities=18% Similarity=0.099 Sum_probs=127.7
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcCCCCCC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETVPIEIP 241 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~~~~ 241 (377)
....||++.||||||++++. |.|+++.+.||+|.+.|+++|.|++. .++|.|+|||+|+++||+.||..|........
T Consensus 10 ~~~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~ 88 (179)
T 1qu6_A 10 LSAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVS 88 (179)
T ss_dssp SSSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCS
T ss_pred cCCCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCC
Confidence 34579999999999999997 89999989999999999999999986 57999999999999999999999986542100
Q ss_pred ccCCCCcccccccccCCCCCCCccccchhhhhhhhhhhhccccCCCCchhHhhhccCCCCCCCCCHHHHHHHHHhhcCce
Q psy5350 242 EKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYR 321 (377)
Q Consensus 242 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~n~i~~L~el~q~~~~~ 321 (377)
.. + . ...+ ........||+++|+||||++++.
T Consensus 89 p~--------------------~--~-------------~~~~-------------~~e~~~~~n~~~~L~E~~qk~~~~ 120 (179)
T 1qu6_A 89 PL--------------------L--L-------------TTTN-------------SSEGLSMGNYIGLINRIAQKKRLT 120 (179)
T ss_dssp CS--------------------S--C-------------CCSC-------------SSCCCCCCCCHHHHHHHHHHSCCE
T ss_pred Cc--------------------c--C-------------CCCC-------------cccccCCCCHHHHHHHHHHhcCCc
Confidence 00 0 0 0000 000113569999999999999999
Q ss_pred EEEEeecccCCCCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHHHh
Q psy5350 322 VSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQI 374 (377)
Q Consensus 322 ~~~~~~~~~g~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L~~ 374 (377)
++|.+. +.|++|...|+++|......++.|.|+|||+||++||+.||..|..
T Consensus 121 ~~Y~~~-~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~ 172 (179)
T 1qu6_A 121 VNYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILS 172 (179)
T ss_dssp EEEEEE-EECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEec-CcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhc
Confidence 999975 4788886556555554343468899999999999999999999854
No 4
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.95 E-value=5.8e-27 Score=215.53 Aligned_cols=153 Identities=25% Similarity=0.318 Sum_probs=126.9
Q ss_pred CCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCCCcc-
Q psy5350 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEK- 153 (377)
Q Consensus 75 ~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~~~~- 153 (377)
..+||+.|++|++. +..|.|+++.++||+|++.|+|+|.|+|. . +.|.|.|||+|||.||+.||+.|...+.+.
T Consensus 3 ~~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~---~-~~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~ 77 (236)
T 2l3j_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQ---V-FEGSGPTKKKAKLHAAEKALRSFVQFPNASE 77 (236)
T ss_dssp CCCTHHHHHHHHHH-CSSCEEEEEEEESCTTSCEEEEEEEETTE---E-EEEEESHHHHHHHHHHHHHHHHHTTCSSCSC
T ss_pred CCCCcCHHHHHhhc-CCCceEEEEeccCCCCCCeEEEEEEECCE---E-EEEecCChHHHHHHHHHHHHHHHHhcccccc
Confidence 36889999999876 46799999999999999999999999996 4 599999999999999999999997632100
Q ss_pred ---------cc----------------ccccC----------------------------------------------CC
Q psy5350 154 ---------LM----------------CQKEN----------------------------------------------LF 162 (377)
Q Consensus 154 ---------~~----------------~~~~~----------------------------------------------~~ 162 (377)
+. +.... ..
T Consensus 78 ~~~amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ 157 (236)
T 2l3j_A 78 AHLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPP 157 (236)
T ss_dssp CCCSCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCC
T ss_pred chhhhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCC
Confidence 00 00000 00
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
....||++.|||| ++.|.|+++.++||+|.+.|+++|.|++..+.|.|+|||+|+++||+.||..|....
T Consensus 158 ~~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~ 227 (236)
T 2l3j_A 158 PSGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALATVFNLH 227 (236)
T ss_dssp CSSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEEEeeeCCHHHHHHHHHHHHHHHHcccc
Confidence 1246999999999 467899999999999999999999999988899999999999999999999997543
No 5
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.94 E-value=6.4e-27 Score=217.67 Aligned_cols=140 Identities=22% Similarity=0.260 Sum_probs=124.6
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH-------hh--
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE-------VM-- 69 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~-------~~-- 69 (377)
|..+||...+ +|.++||++||+++.++...+++.++++++|+|||+ |||+| + |++.++.|. +.
T Consensus 97 r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld-~---g~~~~~~~i~~~~~~~~~~~ 172 (252)
T 1o0w_A 97 KSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLD-Q---GYEKIKELFEQEFEFYIEKI 172 (252)
T ss_dssp HHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHH-H---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHcCcHHhhccCchhhhcCCCCCccHHHhHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHHHh
Confidence 6788999988 899999999999999988888888899999999999 99999 8 999999981 11
Q ss_pred hcCCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 70 RLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 70 ~~~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
......+|||+.||||||+++ ..|+|+++.++||+|.+.|+|.|+|+|+ .++.|.|.|||+||+.||+.||+.|..
T Consensus 173 ~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~---~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 173 MKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGK---TIATGKGRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTE---EEEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred hhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCE---EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 113346899999999999985 5899999999999999999999999998 789999999999999999999999974
Q ss_pred C
Q psy5350 149 R 149 (377)
Q Consensus 149 ~ 149 (377)
.
T Consensus 250 ~ 250 (252)
T 1o0w_A 250 E 250 (252)
T ss_dssp -
T ss_pred c
Confidence 3
No 6
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.93 E-value=6.1e-28 Score=223.74 Aligned_cols=139 Identities=21% Similarity=0.197 Sum_probs=56.8
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH--hh-------
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE--VM------- 69 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~--~~------- 69 (377)
|..+||.+.+ +|.++||+++|+++.++...+++.++++++|+|||+ |||+| + |++.++.|. +.
T Consensus 95 r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~g~~~~~~lad~fEAliGAiyld-~---G~~~~~~~i~~~~~~~l~~~ 170 (248)
T 3n3w_A 95 RAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLE-A---GFEFAKTIALRLIEKNFPQI 170 (248)
T ss_dssp HHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHH-H---CHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHHH-C---ChHHHHHHHHHHHHHHHHHh
Confidence 6788999998 899999999999999988888888999999999999 99999 8 999999991 11
Q ss_pred hcCCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 70 RLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 70 ~~~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
......+|||+.||||||+++ ..|.|+++.++||+|.+.|+|.|+|+|+ .++.|.|.|||+||+.||+.||+.|..
T Consensus 171 ~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~---~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 171 DAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGK---ELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCE---EEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 112346899999999999986 6799999999999999999999999998 889999999999999999999998863
No 7
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.92 E-value=3.9e-25 Score=201.83 Aligned_cols=131 Identities=21% Similarity=0.332 Sum_probs=115.7
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHH--HHhH-------Hhh
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEE--AARL-------EVM 69 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~--~~~~-------~~~ 69 (377)
|..+||...+ ++.++||++||+++.++.. +++++|+|||+ |||+| + |++. ++.| .+.
T Consensus 71 r~~lV~~~~la~~a~~l~l~~~l~~~~~~~~------~~~lad~~EAliGAiyld-~---g~~~~~~~~~i~~~~~~~~~ 140 (221)
T 2nug_A 71 KAYLISEEFFNLLAQKLELHKFIRIKRGKIN------ETIIGDVFEALWAAVYID-S---GRDANFTRELFYKLFKEDIL 140 (221)
T ss_dssp HHHHTSHHHHHHHHHTTTGGGTCBSCTTCCC------HHHHHHHHHHHHHHHHHH-T---TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHcChHHhhccCCCccc------chHHHHHHHHHHHHHHHh-C---CCCHHHHHHHHHHHHHHHHh
Confidence 6788999988 8999999999999987753 89999999999 99999 7 8988 9998 112
Q ss_pred -h--cCCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHH
Q psy5350 70 -R--LNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQ 145 (377)
Q Consensus 70 -~--~~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~ 145 (377)
. .....+|||+.||||||+++ ..|.|+++.++||+|.+.|+|.|+|+| .++.|.|.|||+||+.||+.||+.
T Consensus 141 ~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~----~~~~G~G~skK~Ae~~AA~~AL~~ 216 (221)
T 2nug_A 141 SAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKE----YRTLGEGKSKKEAEQRAAEELIKL 216 (221)
T ss_dssp HHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETT----EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECC----EEEEEecCCHHHHHHHHHHHHHHH
Confidence 1 12336899999999999985 679999999999999999999999999 379999999999999999999999
Q ss_pred Hh
Q psy5350 146 LI 147 (377)
Q Consensus 146 L~ 147 (377)
|.
T Consensus 217 L~ 218 (221)
T 2nug_A 217 LE 218 (221)
T ss_dssp HC
T ss_pred hh
Confidence 86
No 8
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.7e-26 Score=213.70 Aligned_cols=140 Identities=24% Similarity=0.224 Sum_probs=56.5
Q ss_pred cccccchhHh--hhhhC---CCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH-------h
Q psy5350 3 RVSNVSDEVE--DKADI---NMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE-------V 68 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~l---gl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~-------~ 68 (377)
|..+||.+.+ ++.++ ||++||+++.++...+++.++++++|+|||+ |||+| + |++.++.|. +
T Consensus 77 r~~lV~~~~la~~a~~l~~~gL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld-~---g~~~~~~~i~~~~~~~~ 152 (242)
T 2a11_A 77 RASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQ-H---GMEKAREVILRLFGPLL 152 (242)
T ss_dssp HHHHHSHHHHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHH-H---CHHHHHHHHHHHTHHHH
T ss_pred HHHHhCHHHHHHHHHHhhhhChHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHHHHH
Confidence 6788999988 88999 9999999999988888888899999999999 99999 8 999999981 1
Q ss_pred hhc--CCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHH
Q psy5350 69 MRL--NTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQ 145 (377)
Q Consensus 69 ~~~--~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~ 145 (377)
... ....+|||+.||||||+++ ..|+|+++. +||+|.+.|+|.|+|+|+ .++.|.|.|||+||+.||+.||+.
T Consensus 153 ~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp~h~~~F~v~v~v~g~---~~~~G~G~skk~Ae~~AA~~AL~~ 228 (242)
T 2a11_A 153 DAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDS---EYGSGVGRSKKEAEQKAAAAAWKA 228 (242)
T ss_dssp HHTTC---------------------------------------------------------------------------
T ss_pred HHhhhccccCChHHHHHHHHHHhCCCCCeEEEec-cCCCCCCeEEEEEEECCE---EEEEeeeCCHHHHHHHHHHHHHHH
Confidence 111 1235799999999999986 679999988 899999999999999998 789999999999999999999999
Q ss_pred HhcCC
Q psy5350 146 LIGRD 150 (377)
Q Consensus 146 L~~~~ 150 (377)
|....
T Consensus 229 L~~~~ 233 (242)
T 2a11_A 229 LEVLD 233 (242)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 97543
No 9
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.91 E-value=8.6e-24 Score=193.71 Aligned_cols=177 Identities=17% Similarity=0.097 Sum_probs=123.0
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEE-EEEecCCHHHHHHHHHHHHHHHhhcCCCCC
Q psy5350 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNMLKFLETVPIEI 240 (377)
Q Consensus 162 ~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~sKK~Ak~~AA~~~l~~L~~~~~~~ 240 (377)
.....||++.||||||++++..|.|.++.+.||+ +.|+++|.|++.. +.|.|+|||+|+++||+.||..|....+.
T Consensus 18 ~~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~- 94 (232)
T 2yt4_A 18 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVK- 94 (232)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTTTTT-
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhhccc-
Confidence 3466899999999999999999999999889988 9999999999975 89999999999999999999999764221
Q ss_pred CccCCCCcccccccccCCCCCCCccccchhhhhhhhhhhhccccCCCCchhHhhhccCCCCCCCCCHHHHHHHHHhhcCc
Q psy5350 241 PEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKY 320 (377)
Q Consensus 241 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~n~i~~L~el~q~~~~ 320 (377)
..... .+. + .. ..+.+ ..+. .....+. . +.. .....||+.+|+| |+..++
T Consensus 95 -~~~~~---~~~-------~-----~~------~~~~~-~~~~-~~~~~~~-~-~~~---~~~~~d~kt~LqE-~~~~~~ 144 (232)
T 2yt4_A 95 -QTSEE---KPK-------D-----SE------ELEYF-NHIS-IEDSRVY-E-LTS---KAGLLSPYQILHE-CLKRNH 144 (232)
T ss_dssp -C-----------------------CC------GGGGG-GGSB-TTCTTHH-H-HHH---HHTCCCHHHHHHH-HHHTSS
T ss_pred -cCCcc---ccc-------c-----cc------chhhc-cccc-ccCCccc-c-ccc---ccCCCChhHHHHH-HHHcCC
Confidence 01000 000 0 00 00000 0000 0000010 0 000 1135699999999 887777
Q ss_pred e-EEEE--eecccCCCCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHHHh
Q psy5350 321 R-VSFV--DIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQI 374 (377)
Q Consensus 321 ~-~~~~--~~~~~g~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L~~ 374 (377)
. +.|. .+.+.|++|...|+|+|. ..++.|.|.|||+|++.||+.||..|..
T Consensus 145 ~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 198 (232)
T 2yt4_A 145 GMGDTSIKFEVVPGKNQKSEYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLHP 198 (232)
T ss_dssp SCCCEEEECC------CCEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHST
T ss_pred CCCceEEEEeecCCCCCCCEEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 5 4676 666789999999999987 4789999999999999999999998864
No 10
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.88 E-value=4.8e-21 Score=176.04 Aligned_cols=204 Identities=21% Similarity=0.197 Sum_probs=124.8
Q ss_pred CCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCccC
Q psy5350 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKK 244 (377)
Q Consensus 165 ~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~~~~~~~ 244 (377)
..+|++.|+++++. +..|.|+++.++||+|.+.|+++|.|++..++|.|+|||+|+++||+.||+.|...+.......
T Consensus 3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~ 80 (236)
T 2l3j_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHL 80 (236)
T ss_dssp CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEEEEecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence 35777777777765 3568999998899999999999999999888999999999999999999999987542110000
Q ss_pred CC----C-cccccccccCCCCCCCccccchhhhhhh----hhhhhccccCCCCch----------hHhh-hccCCCCCCC
Q psy5350 245 QG----E-DVDEKGESNGLKHTHDSTFLTPQILKKI----QQYHTVFSQKTKGPL----------LEKL-LSTRNLIDEV 304 (377)
Q Consensus 245 ~e----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----------~~~~-l~~~~~~~~~ 304 (377)
.. . +.+..++....++..+..+......... ......+.......+ ...+ +.........
T Consensus 81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 160 (236)
T 2l3j_A 81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG 160 (236)
T ss_dssp SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence 00 0 0000000000000000000000000000 000000000000000 0000 0000011245
Q ss_pred CCHHHHHHHHHhhcCceEEEEeecccCCCCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHHHhh
Q psy5350 305 EDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375 (377)
Q Consensus 305 ~n~i~~L~el~q~~~~~~~~~~~~~~g~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L~~~ 375 (377)
.||+++|+|| ...+.|.++.+.|++|...|+++|.... .++.|.|.|||+|+++||+.||..|..+
T Consensus 161 ~d~ks~LqE~----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 161 KNPVMILNEL----RPGLKYDFLSESGESHAKSFVMSVVVDG-QFFEGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp CCHHHHHHHH----CCCEEEEEECCSSSSSSCCEEEEEEETT-EEEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhc----CCCCcEEEEEeeCCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHccc
Confidence 7999999999 4568999998899999888888887655 4679999999999999999999999754
No 11
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.85 E-value=1.2e-22 Score=195.46 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=50.2
Q ss_pred cccccchhHh--hhhhCCCCceeeeccccccc-CCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH-------hhh
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKV-EENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE-------VMR 70 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~-~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~-------~~~ 70 (377)
|-.+||...+ .|.++||+++|+++.+.... ++..++++++|+|||+ |||+|+ +..|++.++.|. +..
T Consensus 164 r~~lVs~~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~-~~~G~~~a~~fi~~l~~~~l~~ 242 (341)
T 3rv0_A 164 KESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDR-FGTEFLDIKEWLEELSEKKLAK 242 (341)
T ss_dssp HHHHHSHHHHHHHHHHTTTTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHH-CSSTTHHHHHHHHHHTHHHHHC
T ss_pred HHHHhCHHHHHHHHHHcCcHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 6778999988 89999999999965443222 2334689999999999 999994 234899999992 111
Q ss_pred c------CCCCCChHHHHHHHHHhCC--CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHH
Q psy5350 71 L------NTGDRTPVSLMQELLSRRG--TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSV 142 (377)
Q Consensus 71 ~------~~~~~~pks~L~E~~q~~~--~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~a 142 (377)
. ....+|||+.||||||+++ ..|+|+++.++|| |+|.|+++|+ .++.|.|.|||+|||.||+.|
T Consensus 243 ~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~---~~g~G~G~SKK~AEq~AA~~A 314 (341)
T 3rv0_A 243 SSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDI---LLDEAEGNSIREAEHRAAMKV 314 (341)
T ss_dssp GGGC----------------------------------------------------------------------------
T ss_pred HhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCE---EEEEEEeCCHHHHHHHHHHHH
Confidence 1 1345899999999999985 3579999888776 9999999998 899999999999999999999
Q ss_pred HHHHhcC
Q psy5350 143 LDQLIGR 149 (377)
Q Consensus 143 L~~L~~~ 149 (377)
|+.|...
T Consensus 315 L~~L~~~ 321 (341)
T 3rv0_A 315 LENDELL 321 (341)
T ss_dssp -------
T ss_pred HHHhhhh
Confidence 9998754
No 12
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.81 E-value=1.2e-20 Score=176.76 Aligned_cols=133 Identities=20% Similarity=0.169 Sum_probs=100.3
Q ss_pred cccccchhHh--hhhhCCCCceee-----------------eccc---------------ccccCCCCCcchhhhHHHHH
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVS-----------------LDCN---------------EVKVEENSPSRVLFDNNEIK 48 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~-----------------~~~~---------------~~~~~~~~~~~ilaD~~EA~ 48 (377)
|..+||...+ +|.++||++||+ +|.+ +...+++.++++++|+|||+
T Consensus 85 rs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAl 164 (265)
T 3c4b_A 85 RSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESL 164 (265)
T ss_dssp HHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHH
Confidence 6789999998 899999999997 4333 34556778899999999999
Q ss_pred --hhhhcCCCCCCh--HHHHhHH--hh----h--cCCCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEEC
Q psy5350 49 --QIPKVSTNNLPL--EEAARLE--VM----R--LNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLT 116 (377)
Q Consensus 49 --AiylDs~~~~g~--~~~~~~~--~~----~--~~~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~ 116 (377)
|||+| + |+ +.++.|. ++ . .....++|+++|+|+|++ .+.|. ..++.|++.|+|.|+|+
T Consensus 165 iGAiylD-~---G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~---~~~~~---~~~~~~~~~f~v~v~v~ 234 (265)
T 3c4b_A 165 AGAIYMD-S---GMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPE---TAKFS---PAERTYDGKVRVTVEVV 234 (265)
T ss_dssp HHHHHHH-T---TSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTT---TEEEC---CCEECTTSCEEEEEEET
T ss_pred hhheeee-c---CCCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhccC---Cceee---eccccCCCcEEEEEEEe
Confidence 99999 6 66 8899881 11 1 112345565555555543 33333 23457899999999999
Q ss_pred CccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 117 SESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 117 ~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
++ ..+.|.|.|||+|||.||+.||+.|..
T Consensus 235 ~~---~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 235 GK---GKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp TT---EEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cc---eEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 98 789999999999999999999999864
No 13
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=141.10 Aligned_cols=78 Identities=38% Similarity=0.594 Sum_probs=70.9
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCCC
Q psy5350 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238 (377)
Q Consensus 161 ~~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~ 238 (377)
......||++.||||||+++++.|.|+++.++||+|.+.|+|+|.|++..++|.|+|||+|+++||+.||..|...++
T Consensus 10 ~~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~G~SKK~Aeq~AA~~AL~~L~~~p~ 87 (88)
T 3adl_A 10 LVPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPL 87 (88)
T ss_dssp CCCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCEEEEEeeCCHHHHHHHHHHHHHHHHHccCC
Confidence 445678999999999999999999999999999999999999999999888999999999999999999999987653
No 14
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=141.51 Aligned_cols=75 Identities=39% Similarity=0.674 Sum_probs=61.0
Q ss_pred CCCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCC
Q psy5350 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150 (377)
Q Consensus 72 ~~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~ 150 (377)
....+|||+.||||||+++..|.|+++.++||+|++.|+|.|+|+|. .+.|.|.|||+|||.||+.||+.|....
T Consensus 10 ~~~~kd~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 10 ANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDT----SCTGQGPSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTCCCEEEEEEEC-----CCEEEEEEETTE----EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred cccCCCHHHHHHHHHHhcCCCCEEEEEEeECCCCCCcEEEEEEECCE----EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999888899999999999999999999999984 6899999999999999999999998654
No 15
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.79 E-value=2.1e-19 Score=135.99 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 76 RTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 76 ~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
.|||+.||||||+++ ..|.|+++.++||+|++.|+|.|.|+|. .++.|.|.|||+|||.||+.||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~---~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGI---KYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTE---EEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCE---EEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 589999999999996 5799999999999999999999999997 789999999999999999999999864
No 16
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.79 E-value=5.4e-19 Score=136.24 Aligned_cols=72 Identities=29% Similarity=0.509 Sum_probs=67.2
Q ss_pred CCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 74 ~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
..+|||+.||||||+++..|.|+++.++||+|++.|+|.|+|++ .++.|.|.|||+|||.||+.||+.|...
T Consensus 6 ~~~d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~----~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETT----EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEEEeECCCCCCeEEEEEEECC----EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 45899999999999998789999999999999999999999998 5799999999999999999999999744
No 17
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=136.90 Aligned_cols=75 Identities=31% Similarity=0.437 Sum_probs=67.6
Q ss_pred CCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCC
Q psy5350 72 NTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150 (377)
Q Consensus 72 ~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~ 150 (377)
.....|||+.||||||+++ ..|.|+++.++||+|.+.|+|.|+|+| .++.|.|.|||+|||.||+.||..|...+
T Consensus 11 ~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g----~~~~G~G~SKK~Aeq~AA~~AL~~L~~~p 86 (88)
T 3adl_A 11 VPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVER----FIEIGSGTSKKLAKRNAAAKMLLRVHTVP 86 (88)
T ss_dssp CCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETT----EEEEEEESSHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECC----EEEEEeeCCHHHHHHHHHHHHHHHHHccC
Confidence 4456899999999999996 579999999999999999999999999 47899999999999999999999998654
No 18
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.79 E-value=3.5e-19 Score=132.34 Aligned_cols=67 Identities=40% Similarity=0.706 Sum_probs=64.7
Q ss_pred hhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhh
Q psy5350 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234 (377)
Q Consensus 168 ~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~ 234 (377)
|++.||||||+++++.|.|+++.++||+|.+.|+++|.|++..+.|.|+|||+|+++||+.||..|.
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCEEEEeecCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999899999999999999999988899999999999999999999985
No 19
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.78 E-value=6.8e-19 Score=132.19 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeec-cchhHHHHHHHHHHHHHHh
Q psy5350 75 DRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG-KSKKEAKHNAAKSVLDQLI 147 (377)
Q Consensus 75 ~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G-~sKK~Ae~~AA~~aL~~L~ 147 (377)
..|||+.||||||+++ ..|.|+++.+ ||+|++.|+|.|.|+|. .++.|.| .|||+|||.||+.||..|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp~h~~~F~~~v~v~g~---~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGV---RYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEE-SSTTSCEEEEEEEETTE---EEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeE-CCCCCCeEEEEEEECCE---EEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 3699999999999986 5799999986 99999999999999997 7899999 9999999999999999885
No 20
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.78 E-value=8.1e-19 Score=136.55 Aligned_cols=74 Identities=39% Similarity=0.587 Sum_probs=69.5
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
....||++.||||||++++..|.|+++.+.||+|.+.|+|+|.|++..++|.|+|||+|++.||+.||..|...
T Consensus 13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 34679999999999999999999999989999999999999999998899999999999999999999999753
No 21
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.78 E-value=1.3e-18 Score=135.42 Aligned_cols=72 Identities=32% Similarity=0.378 Sum_probs=68.3
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
...||++.||||||++++..|.|+++.++||+|.+.|+++|.|++..+.|.|+|||+|+++||+.||+.|..
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCEEEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999998899999999999999999889999999999999999999999964
No 22
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.78 E-value=8.1e-19 Score=130.33 Aligned_cols=67 Identities=33% Similarity=0.516 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHh
Q psy5350 77 TPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI 147 (377)
Q Consensus 77 ~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~ 147 (377)
.||+.||||||+++ ..|.|+++.++||+|++.|+|.|.|+| .++.|.|.|||+|||.||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~----~~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVET----FVETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETT----EEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECC----EEEEeecCCHHHHHHHHHHHHHHHHh
Confidence 38999999999986 579999999999999999999999999 47999999999999999999999886
No 23
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-19 Score=137.84 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=65.7
Q ss_pred CChHHHHHHHHHhC-----C-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 76 RTPVSLMQELLSRR-----G-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 76 ~~pks~L~E~~q~~-----~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
+|||+.||||||++ + ..|.|+++.++||+|++.|+|.|+|+|. .++.|.|.|||+|||.||+.||..|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~---~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGE---RIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTE---ECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCE---EEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 58999999999973 3 5899999999999999999999999997 7899999999999999999999988754
Q ss_pred C
Q psy5350 150 D 150 (377)
Q Consensus 150 ~ 150 (377)
.
T Consensus 78 ~ 78 (85)
T 2khx_A 78 Q 78 (85)
T ss_dssp C
T ss_pred h
Confidence 3
No 24
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.77 E-value=2e-18 Score=134.37 Aligned_cols=72 Identities=35% Similarity=0.560 Sum_probs=66.6
Q ss_pred CCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 74 GDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 74 ~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
..+|||+.||||||+++ ..|+|+++.++||+|.+.|+|.|+|++ .++.|.|.|||+|||.||+.||..|...
T Consensus 14 ~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g----~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 14 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVER----FIEIGSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETT----EEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECC----EEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999986 569999999999999999999999999 4799999999999999999999999754
No 25
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.77 E-value=2.6e-19 Score=135.60 Aligned_cols=72 Identities=25% Similarity=0.365 Sum_probs=66.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 73 TGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 73 ~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
...+|||+.||||||+++..|.|+++.++||+|.+.|+|.|+|+| .++.|.|.|||+|||.||+.||..|..
T Consensus 4 ~~~~d~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~i~~----~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 4 GDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGS----IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCCSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETT----EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcCCCCEEEEEEeECCCCCCcEEEEEEECC----EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 456899999999999997559999999999999999999999998 579999999999999999999999864
No 26
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.77 E-value=2.3e-18 Score=134.03 Aligned_cols=72 Identities=32% Similarity=0.445 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 74 GDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 74 ~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
..+|||+.||||||+++ ..|.|+++.++||+|++.|+|.|.|++ .++.|.|.|||+|||.||+.||+.|...
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g----~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGN----EVATGTGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETT----EEEEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECC----EEEEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence 35799999999999996 579999999999999999999999999 4799999999999999999999999754
No 27
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.77 E-value=1.5e-18 Score=130.24 Aligned_cols=70 Identities=24% Similarity=0.400 Sum_probs=64.5
Q ss_pred CCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 75 ~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
..|||+.||||||+ ...|.|+++.++||+|++.|+|.|.|+|. .. .|.|.|||+|||+||+.||+.|...
T Consensus 3 ~~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~---~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQ---VF-EGSGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSSHHHHHHHHHH-CSCCEEEEEEEECSSSSCEEEEEEESSSS---EE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC-CCCceEEEEEeeCCCCCCeEEEEEEECCE---EE-EeecCCHHHHHHHHHHHHHHHHhcC
Confidence 47999999999996 67899999999999999999999999997 54 9999999999999999999999753
No 28
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.77 E-value=7.1e-19 Score=133.10 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=66.8
Q ss_pred CCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 165 ~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
..||++.||||||+++++.|.|+++.++||+|.+.|++.|.|++. .+.|.|+|||+|+++||+.||..|..
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 358999999999999999999999999999999999999999996 58999999999999999999999964
No 29
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.77 E-value=9.1e-19 Score=138.40 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=69.0
Q ss_pred CCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCC
Q psy5350 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150 (377)
Q Consensus 74 ~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~ 150 (377)
...|||+.||||||+++..|.|+++.+.||+|.+.|+|.|.|+|+ .++.|.|.|||+|||.||+.||+.|....
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~Gp~H~~~F~v~v~i~g~---~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEK---EFPEAKGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSC---CCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEECCE---EEEEEeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 568999999999999976799999999999999999999999997 78999999999999999999999998554
No 30
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.77 E-value=3.7e-19 Score=134.69 Aligned_cols=72 Identities=26% Similarity=0.383 Sum_probs=67.8
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
....||++.||||||+++++ |.|+++.++||+|.+.|+++|.|++..++|.|+|||+|++.||+.||..|..
T Consensus 4 ~~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECCEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 45679999999999999999 9999998999999999999999999779999999999999999999999864
No 31
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.76 E-value=2.9e-18 Score=132.11 Aligned_cols=74 Identities=32% Similarity=0.357 Sum_probs=68.4
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
....||++.||||||+++ ..|.|+++.+.||+|.+.|+|+|.|++..++|.|+|||+|+++||+.||..|....
T Consensus 5 ~~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 78 (84)
T 2dix_A 5 SSGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANA 78 (84)
T ss_dssp CCCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETTEEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECCEEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence 456899999999999998 68999999899999999999999999977999999999999999999999997554
No 32
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.76 E-value=2.3e-18 Score=129.34 Aligned_cols=68 Identities=28% Similarity=0.305 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEec-CCHHHHHHHHHHHHHHHhh
Q psy5350 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMG-KSKKIAKREAALNMLKFLE 234 (377)
Q Consensus 166 ~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G-~sKK~Ak~~AA~~~l~~L~ 234 (377)
.||++.||||||+++++.|.|+++.+ ||+|.+.|++.|.|++. .+.|.| +|||+|+++||+.||..|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEE-SSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeE-CCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999999975 99999999999999996 489999 9999999999999999985
No 33
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.75 E-value=2.7e-18 Score=136.16 Aligned_cols=71 Identities=23% Similarity=0.431 Sum_probs=66.5
Q ss_pred CCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECC-ccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS-ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 75 ~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~-~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
.+|||+.||||||+++..|+|++ .+.||+|++.|+|.|+|+| + .++.|.|.|||+|||.||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Qk~~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~~---~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 5 SSGIKNFLYAWCGKRKMTPAYEI-RAVGNKNRQKFMCEVRVEGFN---YAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEE-EEEECSSSEEEEEEEECTTCS---CCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCeEEE-eeecCCCCCeEEEEEEECCeE---EEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999977899999 8899999999999999999 6 7899999999999999999999999753
No 34
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.75 E-value=1.1e-18 Score=135.78 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=64.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHh
Q psy5350 73 TGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI 147 (377)
Q Consensus 73 ~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~ 147 (377)
+..+|||+.||||+|+++..|.|+++.+ ||+|++.|+|+|.|+|.. .++.|.|.|||+|||.||+.||..|.
T Consensus 3 ~~~~D~KT~LQE~~Q~~~~~p~Y~v~~~-GpdH~k~F~v~v~i~~~~--~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 3 KLDMNAKRQLYSLIGYASLRLHYVTVKK-PTAVDPNSIVECRVGDGT--VLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp SSCHHHHHHHHHHTCSSSSCCEEEECCC-CSSSCCSEEEEEECSSSC--EEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCCCchHHHHHHHcCCCCCCEEEEeee-CCCCCCeEEEEEEECCEE--EEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 3457999999999999877899999776 999999999999999952 48999999999999999999999876
No 35
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=132.94 Aligned_cols=75 Identities=32% Similarity=0.306 Sum_probs=61.0
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 162 ~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
.....||++.||||||+++. .|.|+++.++||+|.+.|+++|.|++..++|.|+|||+|+++||+.||..|....
T Consensus 10 ~~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 10 ANPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred cccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence 34678999999999999875 6999999899999999999999999998999999999999999999999997654
No 36
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.75 E-value=3.7e-18 Score=128.12 Aligned_cols=70 Identities=29% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 165 ~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
..||++.||||||+ ++.|.|+++.++||+|.+.|+++|.|++....|.|+|||+|+++||+.||..|.+.
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEEEEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEEEeecCCHHHHHHHHHHHHHHHHhcC
Confidence 46999999999996 67899999989999999999999999997779999999999999999999999864
No 37
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.74 E-value=8.1e-18 Score=130.67 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCC-eEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCC
Q psy5350 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEP-IFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150 (377)
Q Consensus 75 ~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~-~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~ 150 (377)
.+|||+.||||||+++..|.|+ .++||+|++ +|+|.|.|+|+ .++.|.|.|||+|||.||+.||+.|...+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~~Y~--~~~Gp~H~~~~F~~~v~v~g~---~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 76 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSVNYE--QCEPNSELPQRFICKCKIGQT---MYGTGSGVTKQEAKQLAAKEAYQKLLKSP 76 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCEEEE--ECCCSSSSSCCEEEEEEESSC---EEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHcCCCCeeE--EeeCCCCCCceEEEEEEECCE---EEEEeecCCHHHHHHHHHHHHHHHHHhcC
Confidence 4699999999999998777999 678999999 79999999998 88999999999999999999999998654
No 38
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.74 E-value=7e-18 Score=133.44 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=66.4
Q ss_pred CCCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 72 ~~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
+...+|||+.||||||++ ..|.|+++.++||+|++.|+|.|.|+|. .+ .|.|.|||+|||.||+.||..|..
T Consensus 12 ~~~~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~---~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 12 DSKAIDLMNALMRLNQIR-PGLQYKLLSQSGPVHAPVFTMSVDVDGT---TY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCCSSSCTHHHHHHHHHS-CSCCCEEEEEESCSSSCEEEEEEEETTE---EE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHhcC-CCceEEEEEeeCCCCCCeEEEEEEECCE---EE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 356789999999999997 6899999999999999999999999997 55 999999999999999999999964
No 39
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=131.51 Aligned_cols=71 Identities=32% Similarity=0.479 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHh-----cCCCCCeeEeecccCCCCCceEEEEEEEccEE-EEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 166 PNPVGQLQEACMT-----RKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 166 ~n~~~~L~e~~q~-----~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
.||++.||||||+ ++++.|.|+++.++||+|.+.|+|+|.|++.. +.|.|+|||+|+++||+.||..|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 4899999999998 46788999999999999999999999999964 89999999999999999999988543
No 40
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.73 E-value=6e-18 Score=136.21 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=65.6
Q ss_pred CCCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHh
Q psy5350 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLI 147 (377)
Q Consensus 72 ~~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~ 147 (377)
....+|||+.||||||+.+..|.|+++.+ ||+|++.|+|.|+|+|.. .++.|.|.|||+|||.||+.||..+.
T Consensus 4 ~~~~~D~KT~LQE~~Q~~~~~P~Y~vv~~-GPdH~k~F~v~V~i~g~~--~~g~G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 4 DKLDMNAKRQLYSLIGYASLRLHYVTVKK-PTAVDPNSIVECRVGDGT--VLGTGVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CCCCTTHHHHHHHHHCCGGGCCEEEEEEC-CCSSCCCEEEEEECTTCC--EEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CcCCCCchHHHHHHHcCCCCCCEEEEeee-CCCCCCeEEEEEEECCEE--EEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 34568999999999999767899999986 999999999999999952 48999999999999999999999876
No 41
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=130.20 Aligned_cols=71 Identities=28% Similarity=0.371 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCC
Q psy5350 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150 (377)
Q Consensus 75 ~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~ 150 (377)
..++|+.||||||+++ .|.|+++.++||+|++.|+|+|.|+|. . ..|.|.|||+|||.||+.||..|....
T Consensus 13 ~~~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp~H~~~F~v~V~v~g~---~-~~G~G~SKK~AEq~AA~~AL~~L~~~~ 83 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQ---K-FQGAGSNKKVAKAYAALAALEKLFPDT 83 (91)
T ss_dssp CSSTTCHHHHHHHHCS-SCEEEEEEEEECSSCEEEEEEEEETTE---E-EEEEESSHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCHHHHHHHhCC-CCeEEEEEeeCCCCCCeEEEEEEECCE---E-EEeeeCCHHHHHHHHHHHHHHHHhhcC
Confidence 4689999999999998 999999999999999999999999996 4 499999999999999999999998554
No 42
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=1.3e-17 Score=133.27 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=63.7
Q ss_pred CCCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeec-cchhHHHHHHHHHHHHHHhcC
Q psy5350 72 NTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG-KSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 72 ~~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G-~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
....+|||+.||||||+++ ..|.|+++.+ ||+|++.|+|.|.|+|. .++.|.| .|||+|||.||+.||+.|...
T Consensus 13 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp~H~~~F~~~V~v~g~---~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~ 88 (103)
T 2l2n_A 13 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGV---RYNSLPGFFNRKAAEQSAAEVALRELAKS 88 (103)
T ss_dssp ------CTTHHHHHHHHTTCCCCEEEEEEE-SCSSSCEEEEEEEETTE---EEECCSCBSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEeE-cCCCCCeEEEEEEECCE---EEEEeecCCCHHHHHHHHHHHHHHHHhcc
Confidence 3456899999999999996 5799999985 99999999999999997 7899999 999999999999999999754
No 43
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.72 E-value=1.8e-17 Score=130.94 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=68.2
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
....||++.||||||+++++ |.|+++.+.||+|.+.|++.|.|++. .+.|.|+|||+|+++||+.||..|....
T Consensus 11 ~~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 11 DTPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp CCTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 36789999999999999997 79999988999999999999999986 5899999999999999999999997554
No 44
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.70 E-value=5.7e-17 Score=128.36 Aligned_cols=72 Identities=25% Similarity=0.386 Sum_probs=66.3
Q ss_pred CCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 73 TGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 73 ~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
...+|||+.||||||+++ ..|+|+++.++||+ +.|+|.|.|+|. .++.|.|.|||+|||.||+.||..|...
T Consensus 13 ~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~---~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 13 PNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGV---TYGSGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp TTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTE---EEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCE---EEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999986 57999999999997 999999999997 7899999999999999999999999744
No 45
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.70 E-value=8.5e-17 Score=127.20 Aligned_cols=72 Identities=25% Similarity=0.239 Sum_probs=66.7
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 162 ~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
+....||++.||||||++ +.|.|+++.+.||+|.+.|+++|.|++....|.|+|||+|+++||+.||..|..
T Consensus 12 ~~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 12 DSKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEEEEeeCCHHHHHHHHHHHHHHHhCC
Confidence 456789999999999996 678999998899999999999999999877999999999999999999999964
No 46
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=126.60 Aligned_cols=72 Identities=29% Similarity=0.258 Sum_probs=66.3
Q ss_pred CCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCCC
Q psy5350 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238 (377)
Q Consensus 165 ~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~ 238 (377)
..++++.|+||||+++ .|.|+++.++||+|.+.|+++|.|++....|.|+|||+|+|+||+.||..|....+
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ 84 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTP 84 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEEEeeeCCHHHHHHHHHHHHHHHHhhcCC
Confidence 4589999999999998 68999998999999999999999999878999999999999999999999976553
No 47
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.70 E-value=2.8e-17 Score=133.45 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=65.7
Q ss_pred CCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEE-----CCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISL-----TSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 75 ~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v-----~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
.+|||+.||||||+++..|.|+ +.+.||+|++.|+|.|.| +++ +++.|.|.|||+|||.||+.||+.|...
T Consensus 25 ~~d~Kt~LqE~~Qk~~~~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~---~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 25 LENAKARLNQYFQKEKIQGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRR---IFAREHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCE-EEEESCSTTCEEEEEEEEEETTTTEE---EEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCCCCeEE-EeeECCCCCCcEEEEEEEeeeccCCE---EEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 3699999999999997699999 788999999999999999 466 8899999999999999999999999754
Q ss_pred C
Q psy5350 150 D 150 (377)
Q Consensus 150 ~ 150 (377)
.
T Consensus 101 ~ 101 (113)
T 1uil_A 101 G 101 (113)
T ss_dssp T
T ss_pred C
Confidence 4
No 48
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.70 E-value=5.2e-17 Score=131.37 Aligned_cols=71 Identities=25% Similarity=0.430 Sum_probs=64.8
Q ss_pred CCCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcCC
Q psy5350 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD 150 (377)
Q Consensus 72 ~~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~~ 150 (377)
....+|||+.||||||+ |+|+++.++||+|++.|+|+|.|+|. .+ .|.|.|||+|||+||+.||+.|...+
T Consensus 33 ~~~~kd~Ks~LQE~~q~----p~Y~~v~~~Gp~H~k~F~v~V~v~g~---~~-~G~G~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 33 IPQPKNTVAMLNELRHG----LIYKLESQTGPVHAPLFTISVEVDGQ---KY-LGQGRSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp CCCCSCHHHHHHHHCSC----CEEEEEEEECCSSSCEEEEEEEETTE---EE-EEEESSHHHHHHHHHHHHHHHHCCCT
T ss_pred CCCCCCHHHHHHHHccC----CeEEEEEeeCCCCCCeEEEEEEECCE---EE-EeeeCCHHHHHHHHHHHHHHHHHcCC
Confidence 34568999999999985 99999999999999999999999997 66 99999999999999999999998643
No 49
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=3.3e-17 Score=130.96 Aligned_cols=75 Identities=25% Similarity=0.243 Sum_probs=64.9
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEec-CCHHHHHHHHHHHHHHHhhcCC
Q psy5350 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMG-KSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 162 ~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G-~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
.....||++.||||||+++++.|.|+++.+ ||+|.+.|+++|.|++. .+.|.| +|||+|+++||+.||..|...+
T Consensus 13 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 13 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp ------CTTHHHHHHHHTTCCCCEEEEEEE-SCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEeE-cCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 356679999999999999999999999975 99999999999999996 489999 9999999999999999998654
No 50
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.69 E-value=4.4e-17 Score=129.13 Aligned_cols=71 Identities=24% Similarity=0.297 Sum_probs=66.0
Q ss_pred CCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEcc--EEEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNV--YKEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 165 ~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~--~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
..||++.||||||++ +..|.|++ .+.||+|.+.|+|+|.|++ ..++|.|+|||+|+|+||+.||+.|....
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEI-RAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEE-EEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEE-eeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 469999999999999 88899999 7899999999999999999 46999999999999999999999997644
No 51
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.68 E-value=2e-16 Score=122.73 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=65.6
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCc-eEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcCCCC
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHER-MFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETVPIE 239 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~-~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~~~~ 239 (377)
...||++.||||||++++.+ .|+ .+.||+|.+ .|+|.|.|++. .+.|.|+|||+|++.||+.||..|...++.
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~-~Y~--~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~ 78 (88)
T 1x48_A 4 GSSGYIGLVNSFAQKKKLSV-NYE--QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPK 78 (88)
T ss_dssp SSSCHHHHHHHHHHHTTCCE-EEE--ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHcCCCC-eeE--EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45699999999999999976 999 578999999 79999999985 589999999999999999999999887543
No 52
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.68 E-value=1.6e-16 Score=118.49 Aligned_cols=67 Identities=28% Similarity=0.485 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhc
Q psy5350 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148 (377)
Q Consensus 74 ~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~ 148 (377)
..+||++.||||| ..|.|+++.++||+|++.|+|.|.|+|. . +.|.|.|||+|||.||+.||+.|..
T Consensus 2 ~~knp~s~L~E~~----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~---~-~~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 2 SGKNPVMILNELR----PGLKYDFLSESGESHAKSFVMSVVVDGQ---F-FEGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CSSCHHHHHHHHC----CSCEEEEEECCCCTTTCCEEEEEECSSC---E-EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC----CCCEEEEEEeECCCCCceEEEEEEECCE---E-EEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 4689999999993 6799999999999999999999999996 4 4899999999999999999999874
No 53
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.66 E-value=2.9e-16 Score=117.13 Aligned_cols=67 Identities=31% Similarity=0.352 Sum_probs=61.9
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
..+||++.||||| +.|.|+++.++||+|.+.|+++|.|++..+.|.|+|||+|+++||+.||..|..
T Consensus 2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEEEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 4579999999994 578999998999999999999999999878999999999999999999999865
No 54
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.66 E-value=5.4e-16 Score=122.75 Aligned_cols=72 Identities=25% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
....||++.||||||+++++.|.|+++.++||+ +.|++.|.|++. .+.|.|+|||+|+++||+.||..|...
T Consensus 13 ~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 13 PNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp TTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999999999999999889988 999999999996 589999999999999999999999744
No 55
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.64 E-value=2.8e-16 Score=127.50 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEc-----c-EEEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN-----V-YKEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~-----~-~~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
+...||++.||||||++++ .|.|+ +.+.||+|.+.|+++|.|+ + ..+.|.|+|||+|++.||+.||..|...
T Consensus 23 ~~~~d~Kt~LqE~~Qk~~~-~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 23 WTLENAKARLNQYFQKEKI-QGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp CCHHHHHHHHHHHHHHSCC-CCCCE-EEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCC-CCeEE-EeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 4456999999999999999 89999 6789999999999999993 4 4689999999999999999999999765
Q ss_pred C
Q psy5350 237 P 237 (377)
Q Consensus 237 ~ 237 (377)
.
T Consensus 101 ~ 101 (113)
T 1uil_A 101 G 101 (113)
T ss_dssp T
T ss_pred C
Confidence 3
No 56
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.64 E-value=2e-16 Score=123.12 Aligned_cols=70 Identities=23% Similarity=0.069 Sum_probs=62.6
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE--EEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY--KEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~--~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
...||++.||||||+++ ..|.|.++.+ ||+|.+.|+++|.|++. .+.|.|+|||+|+|.||+.||..|.-
T Consensus 4 ~~~D~KT~LQE~~Q~~~-~~p~Y~v~~~-GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~ 75 (94)
T 1t4n_A 4 LDMNAKRQLYSLIGYAS-LRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp SCHHHHHHHHHHTCSSS-SCCEEEECCC-CSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCCchHHHHHHHcCCC-CCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 34699999999999974 6799999865 99999999999999875 69999999999999999999988753
No 57
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.63 E-value=6.9e-16 Score=124.79 Aligned_cols=71 Identities=32% Similarity=0.375 Sum_probs=64.7
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 162 FKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 162 ~~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
.....||++.||||||+ |.|+++.++||+|.+.|+++|.|++....|.|+|||+|+|+||+.||+.|...+
T Consensus 33 ~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~~G~G~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 33 IPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKYLGQGRSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp CCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHCCCT
T ss_pred CCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEEEeeeCCHHHHHHHHHHHHHHHHHcCC
Confidence 44568999999999984 899999899999999999999999976699999999999999999999998654
No 58
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=114.29 Aligned_cols=69 Identities=29% Similarity=0.402 Sum_probs=59.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 73 TGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 73 ~~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
...+||++.|+|++ ..|.|+++.++||+|++.|+|.|.|+|. .+ .|.|.|||+|||.||+.||+.|...
T Consensus 4 ~~~K~pl~~L~q~~----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~---~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 4 KHGKNPVMELNEKR----RGLKYELISETGGSHDKRFVMEVEVDGQ---KF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp --CCCHHHHHHHHS----TTCCEEEEEEESCTTSCEEEEEEEETTE---EE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHcC----CCCEEEEEEeeCCCCCceEEEEEEECCE---EE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 34577777666663 5899999999999999999999999996 55 8999999999999999999999754
No 59
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.62 E-value=8.7e-16 Score=126.93 Aligned_cols=71 Identities=24% Similarity=0.163 Sum_probs=64.7
Q ss_pred CCCCChHHHHHHHHHhCC-CCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeec-cchhHHHHHHHHHHHHHHhcC
Q psy5350 73 TGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG-KSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 73 ~~~~~pks~L~E~~q~~~-~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G-~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
...+|||+.||||||+++ ..|+|+++.+ +|++.|+|.|.|+|. .++.|.| .|||+|||.||+.||..|...
T Consensus 23 ~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---~H~~~F~v~V~v~g~---~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 23 PPQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQ---KYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTE---EEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred ccCCCHHHHHHHHHHHcCCCCCeEEEEee---cCCCcEEEEEEECCE---EEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 346899999999999996 6899999876 899999999999997 7899999 999999999999999999743
No 60
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=114.13 Aligned_cols=70 Identities=36% Similarity=0.341 Sum_probs=61.2
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
...+||++.|+|++ +.|.|+++.++||+|.+.|+++|.|++....|.|+|||+|+|+||+.||+.|....
T Consensus 4 ~~~K~pl~~L~q~~-----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~G~SKK~Aeq~AA~~al~~L~~~~ 73 (75)
T 3p1x_A 4 KHGKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDT 73 (75)
T ss_dssp --CCCHHHHHHHHS-----TTCCEEEEEEESCTTSCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHcC-----CCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHccC
Confidence 35678888888874 46899999999999999999999999987799999999999999999999997654
No 61
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.61 E-value=9.6e-16 Score=123.36 Aligned_cols=70 Identities=23% Similarity=0.069 Sum_probs=63.0
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE--EEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY--KEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~--~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
...||++.||||||+.+ ..|.|.++.+ ||+|.+.|++.|.|++. .+.|.|+|||+|+|.||+.||..|.-
T Consensus 6 ~~~D~KT~LQE~~Q~~~-~~P~Y~vv~~-GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~ 77 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYAS-LRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM 77 (117)
T ss_dssp CCTTHHHHHHHHHCCGG-GCCEEEEEEC-CCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCCchHHHHHHHcCCC-CCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 45799999999999954 7799999976 99999999999999985 69999999999999999999987754
No 62
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.57 E-value=6.5e-15 Score=121.69 Aligned_cols=71 Identities=32% Similarity=0.362 Sum_probs=64.9
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEec-CCHHHHHHHHHHHHHHHhhcC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMG-KSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G-~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
....||++.||||||+++++.|.|+++.+ +|.+.|++.|.|++. .+.|.| +|||+|+|+||+.||..|...
T Consensus 23 ~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 23 PPQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred ccCCCHHHHHHHHHHHcCCCCCeEEEEee---cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 34679999999999999999999999865 899999999999996 489999 999999999999999999643
No 63
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.48 E-value=5.4e-14 Score=127.91 Aligned_cols=71 Identities=34% Similarity=0.399 Sum_probs=67.1
Q ss_pred CCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 165 ~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
..||++.||||||+++++.|.|.++.++||+|.+.|+|.|.|++..+.|.|+|||+|++.||+.||..|..
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~~~~G~G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCEEEEEecCCHHHHHHHHHHHHHHHhhc
Confidence 57999999999999999999999998999999999999999998888999999999999999999999963
No 64
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.45 E-value=1.9e-13 Score=126.64 Aligned_cols=74 Identities=28% Similarity=0.231 Sum_probs=67.5
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
....||++.||||||+++++.|.|.++.++||+|.+.|+|.|.|++. .+.|.|+|||+|++.||+.||..|...
T Consensus 176 ~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 176 EMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp CCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred ccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 34579999999999999999999999988999999999999999996 599999999999999999999999654
No 65
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.35 E-value=8.7e-14 Score=128.60 Aligned_cols=72 Identities=25% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
...||++.||||||++++..|.|+++.++||+|.+.|+|.|.|++. .++|.|+|||+|++.||+.||+.|.+
T Consensus 175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 4579999999999999999999999989999999999999999985 68999999999999999999999864
No 66
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.26 E-value=4.6e-13 Score=123.41 Aligned_cols=73 Identities=32% Similarity=0.332 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcCC
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETVP 237 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~~ 237 (377)
...||++.||||||++++..|.|.++. +||+|.+.|+|.|.|++. .++|.|+|||+|++.||+.||+.|....
T Consensus 160 ~~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 160 AGLDWKTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccCChHHHHHHHHHHhCCCCCeEEEec-cCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 357999999999999999999999987 999999999999999985 5899999999999999999999997654
No 67
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.90 E-value=3.3e-10 Score=119.31 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=84.4
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhHH--hhh------
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARLE--VMR------ 70 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~~--~~~------ 70 (377)
|-.+||.+.+ .|+++||++||+++.++. .++++++|+|||+ |||+|.+ |++.++.|. +..
T Consensus 369 Rs~lVsn~~La~~A~~lgL~~~l~~~~~e~-----~~~~ilaD~~EAliGAiylD~~---G~~~a~~~v~~~~~~~~~~~ 440 (756)
T 2qvw_A 369 KMELVRNEALNYLVQTLGLPQLAEFSNNLV-----AKSKTWADMYEEIVGSIFTGPN---GIYGCEEFLAKTLMSPEHSK 440 (756)
T ss_dssp HHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCCCHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHBCGGGSC
T ss_pred HHHHhCchHHHHHHHHcChHHHhccCCCCC-----CcccHHHhHHHHHhCccccccc---ChHHHHHHHHHHHHhhhhcc
Confidence 6789999998 899999999999998875 4679999999999 9999944 799999992 111
Q ss_pred -cCCCCCCh-HHHHHHHHHhCCCCCeEEEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHH---------HHHH
Q psy5350 71 -LNTGDRTP-VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK---------HNAA 139 (377)
Q Consensus 71 -~~~~~~~p-ks~L~E~~q~~~~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae---------~~AA 139 (377)
.....+|| |+.||||+|++ .++.|.+.+.+.|+ -.||
T Consensus 441 ~~~~~~~Dp~Kt~LqE~~q~~--------------------------------~ia~~v~~~~~~ak~~~~~~~~~~~aa 488 (756)
T 2qvw_A 441 TVGSACPDAVTKASKRVCMGE--------------------------------AGAHEFRSLVDYACEQGISVFCSSRVS 488 (756)
T ss_dssp C---CCCHHHHHHHHHHHTSC--------------------------------CCHHHHHHHHHHTTTTTCCCBSSSHHH
T ss_pred cccccccCchHHHHHHHHhcc--------------------------------chhhhhhhhhhHHhhhccccchhhHHH
Confidence 12345789 99999999842 34556677777777 6799
Q ss_pred HHHHHHHhcCC
Q psy5350 140 KSVLDQLIGRD 150 (377)
Q Consensus 140 ~~aL~~L~~~~ 150 (377)
+.||+.|...+
T Consensus 489 ~~aL~~l~~~~ 499 (756)
T 2qvw_A 489 TMFLERLRDIP 499 (756)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHhhcccc
Confidence 99999987654
No 68
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.85 E-value=2.9e-10 Score=109.23 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHhcCCCC-CeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhcC
Q psy5350 163 KVEPNPVGQLQEACMTRKWPP-PVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLETV 236 (377)
Q Consensus 163 ~~~~n~~~~L~e~~q~~~~~~-p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~~ 236 (377)
....||++.||||||+++++. |.|+++.+.|| |++.|.+++. .+.|.|+|||+|+|.||+.||+.|...
T Consensus 251 ~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 251 PLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence 346799999999999998765 59999888785 9999999986 699999999999999999999998654
No 69
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=98.75 E-value=1.2e-09 Score=94.92 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=56.3
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhH
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARL 66 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~ 66 (377)
|..+||.+.+ .|+++||+++|++++++...+++.++++++|+|||+ |||+| + |++.+++|
T Consensus 95 r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD-~---G~~~a~~~ 158 (170)
T 3o2r_A 95 RAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLE-A---GFEFAKTI 158 (170)
T ss_dssp HHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHH-H---CHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcCCCCcchHHHHHHHHHHHHHHHH-C---CHHHHHHH
Confidence 6788999988 889999999999999998888888999999999999 99999 8 99999999
No 70
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.46 E-value=2e-07 Score=86.61 Aligned_cols=63 Identities=27% Similarity=0.264 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccE-EEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 166 PNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY-KEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 166 ~n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
++|+..|+|+|++ .+.|. ..++.|.+.|+|.|.|++. .++|.|+|||+|++.||+.||+.|..
T Consensus 200 k~~l~el~~~~~~----~~~~~---~~~~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 200 RSPVRELLEMEPE----TAKFS---PAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp CCHHHHHHHHCTT----TEEEC---CCEECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhccC----Cceee---eccccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4555555555543 12332 3455789999999999874 69999999999999999999999964
No 71
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=98.44 E-value=5.9e-08 Score=80.85 Aligned_cols=60 Identities=12% Similarity=-0.049 Sum_probs=55.3
Q ss_pred cccccchhHh--hhhhC----CCC----ceeeecccccccCCCCCcch----hhhHHHHH--hhhhcCCCCCChHHHHhH
Q psy5350 3 RVSNVSDEVE--DKADI----NMP----STVSLDCNEVKVEENSPSRV----LFDNNEIK--QIPKVSTNNLPLEEAARL 66 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~l----gl~----~~l~~~~~~~~~~~~~~~~i----laD~~EA~--AiylDs~~~~g~~~~~~~ 66 (377)
|+.+||...+ .+++| +|. +++++|.++...++++++++ +||.|||+ ||||| + |++.++.|
T Consensus 46 r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~~~k~~si~~Yr~A~~fEALiGalYLd-~---g~er~~~~ 121 (138)
T 1u61_A 46 GTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLL-N---NRERLDEI 121 (138)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSCCCTTCCHHHHHHHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCCCCCCCchhhhhhhhHHHHHHHHHHHC-C---CHHHHHHH
Confidence 6788998887 78999 999 79999999988888999999 99999999 99999 8 99999998
No 72
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=98.10 E-value=5.6e-07 Score=82.34 Aligned_cols=63 Identities=10% Similarity=-0.010 Sum_probs=46.0
Q ss_pred cccccchhHh--hhhhCCCCceeeecccccc-cCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhH
Q psy5350 3 RVSNVSDEVE--DKADINMPSTVSLDCNEVK-VEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARL 66 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lgl~~~l~~~~~~~~-~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~ 66 (377)
|-.+||...+ .|.++||+++|+++.+... .++..+++++||+|||+ |||+|+ ...|++.++.|
T Consensus 164 Rs~lVsn~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~-~g~~l~~v~~~ 231 (246)
T 3rv1_A 164 KESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVQAYIGALVIDR-FGTEFLDIKEW 231 (246)
T ss_dssp HHHHHSHHHHHHHHHHTTSHHHHCSSCC-----------CHHHHHHHHHHHHHHHHH-CSSTTHHHHHH
T ss_pred HHHHhCHHHHHHHHHHCCcHHHHhhcCCHhhhccCcccccHHHHHHHHHHHHHhHcC-CCCCHHHHHHH
Confidence 6778999988 8999999999996533322 12335689999999999 999994 13579999999
No 73
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=97.97 E-value=1.8e-06 Score=71.72 Aligned_cols=60 Identities=12% Similarity=-0.067 Sum_probs=50.6
Q ss_pred cccccchhHh--hhhhCC--CC----ceeeecccccccCCCCCcch----hhhHHHHH--hhhhcCCCCCChHHHHhH
Q psy5350 3 RVSNVSDEVE--DKADIN--MP----STVSLDCNEVKVEENSPSRV----LFDNNEIK--QIPKVSTNNLPLEEAARL 66 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lg--l~----~~l~~~~~~~~~~~~~~~~i----laD~~EA~--AiylDs~~~~g~~~~~~~ 66 (377)
|+.+||...+ .+++|+ |. .+++.|.++...+++++.++ +||.|||+ ||||| + |++.++.|
T Consensus 48 ~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~~~k~~si~~Y~~At~fEALiGaLYLd-~---~~erl~~l 121 (137)
T 2gsl_A 48 VKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYLL-K---KEEEIKKI 121 (137)
T ss_dssp HHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCSCCSSSCHHHHHHHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccccCCCCCCCCChHHHHHhhHHHHHHHHHHHC-C---CHHHHHHH
Confidence 6788998888 677887 77 78889988877777888886 99999999 99999 8 99999998
No 74
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=97.80 E-value=3.4e-06 Score=88.84 Aligned_cols=56 Identities=18% Similarity=0.098 Sum_probs=51.0
Q ss_pred cccccchhHh--hhhhCC--CCceeeecccccccCCCCCcchhhhHHHHH--hhhhcCCCCCChHHHHhH
Q psy5350 3 RVSNVSDEVE--DKADIN--MPSTVSLDCNEVKVEENSPSRVLFDNNEIK--QIPKVSTNNLPLEEAARL 66 (377)
Q Consensus 3 ~~~~v~~~~~--~~~~lg--l~~~l~~~~~~~~~~~~~~~~ilaD~~EA~--AiylDs~~~~g~~~~~~~ 66 (377)
|-.+|+...+ .|+++| |++||+++.++.. .+++++||+|||+ |||+| + |++.++.|
T Consensus 682 rs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~~----~~~kilaD~~EAliGAiylD-~---G~~~a~~~ 743 (756)
T 2qvw_A 682 RQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQ----PDSKVYGDTFEAILAAILLA-C---GEEAAGAF 743 (756)
T ss_dssp HHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTCC----TTCSHHHHHHHHHHHHHHHH-H---CHHHHHHH
T ss_pred HHHHhCChHHHHHHHHhcccHHHHHhcCchhhc----CCccHHHHHHHHHHHHHHHh-C---CHHHHHHH
Confidence 6678999988 899999 9999999988754 5689999999999 99999 8 99999999
No 75
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=96.19 E-value=0.011 Score=46.26 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhhcC------ceEEEEeecccCCCCceEEEEEEec-CCceEEEe-ecCCHHHHHHHHHHHHHHHHHhhh
Q psy5350 306 DPILYLEDLSDELK------YRVSFVDIEEKSKADGFQSLLQLTT-TPVTVFCG-TGASIEVAKIEAVYRALDFLQIMN 376 (377)
Q Consensus 306 n~i~~L~el~q~~~------~~~~~~~~~~~g~~~~~~~~v~v~~-~p~~~~~G-~G~tkk~Ak~~AA~~aL~~L~~~~ 376 (377)
+.++.|+.||+..- ..+.|...+.....+.+ |.|.+=. .|...+.| .=.|++.||+.||..|...|..++
T Consensus 5 sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G 82 (102)
T 2kou_A 5 SSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLG 82 (102)
T ss_dssp HHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCC
Confidence 57999999998753 35666643222223344 7777743 35555666 339999999999999999998876
No 76
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.51 E-value=0.058 Score=42.14 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHhCC------CCCeEEEEeeeCCCCCCeEEEEEEECCcc-c-eeEEEeeccchhHHHHHHHHHHHHHHh
Q psy5350 76 RTPVSLMQELLSRRG------TAPKYELIQIEGAINEPIFKYRISLTSES-R-LYVAIGSGKSKKEAKHNAAKSVLDQLI 147 (377)
Q Consensus 76 ~~pks~L~E~~q~~~------~~p~Y~~~~~~G~~h~~~F~~~v~v~~~~-~-~~~~~g~G~sKK~Ae~~AA~~aL~~L~ 147 (377)
.+.++.|+.||++-. ..|.|.+...... ...| |+|.+-... + .+.|.-. .||+.||+.||-+|...|.
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~--~~~~-c~v~LP~~splr~i~g~~~-~sk~~AK~sAAf~Ac~~L~ 79 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF--GGTI-CRITLPANAPISEIESSLL-PSTEAAKKDACLKAVHELH 79 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG--GCEE-EEEECCTTCSSCCEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeecC--CCeE-EEEECCCCCCCCeeeCCcc-ccHHHHHHHHHHHHHHHHH
Confidence 467899999998752 5799997544322 2467 999986531 1 1445545 8999999999999999997
Q ss_pred cCC
Q psy5350 148 GRD 150 (377)
Q Consensus 148 ~~~ 150 (377)
..+
T Consensus 80 ~~G 82 (102)
T 2kou_A 80 NLG 82 (102)
T ss_dssp HHC
T ss_pred HCC
Confidence 543
No 77
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.34 E-value=0.049 Score=42.58 Aligned_cols=45 Identities=13% Similarity=0.012 Sum_probs=37.9
Q ss_pred CCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHHHhhhC
Q psy5350 333 ADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377 (377)
Q Consensus 333 ~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L~~~~~ 377 (377)
.+...|++.+.=--+..|.|.|+.|-+|.++||..|++.|+.+++
T Consensus 48 ~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lgl 92 (119)
T 2db2_A 48 PKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWGL 92 (119)
T ss_dssp SSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcCc
Confidence 356788888863334799999999999999999999999998864
No 78
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.90 E-value=0.04 Score=43.10 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=51.1
Q ss_pred CCCChHHHHHHHHHhC-C--CCCeE-EEEeeeCCCCCCeEEEEEEECCccceeEEEeeccchhHHHHHHHHHHHHHHhcC
Q psy5350 74 GDRTPVSLMQELLSRR-G--TAPKY-ELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR 149 (377)
Q Consensus 74 ~~~~pks~L~E~~q~~-~--~~p~Y-~~~~~~G~~h~~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~aL~~L~~~ 149 (377)
....||+.|+.-.|+- + ..=+| .....+|+. .+.-++.+.+-.. ...+|.|+.|-+||++||-.|+.+|+..
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k-~K~~tl~l~WP~~---mef~a~G~rK~eAE~kAAA~AC~kLK~L 90 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPK-KKKVTLHIKWPKS---VEVEGYGSKKIDAERQAAAAACQLFKGW 90 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSS-SEEEEEEECSSSC---EEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEeecCCc-eeEEEEEecCCCc---EEEEeeccchHHHHHHHHHHHHHHHHHc
Confidence 4568999999988864 2 11123 122344532 2344444444554 7889999999999999999999999976
Q ss_pred CCc
Q psy5350 150 DDE 152 (377)
Q Consensus 150 ~~~ 152 (377)
.+.
T Consensus 91 gll 93 (119)
T 2db2_A 91 GLL 93 (119)
T ss_dssp TSS
T ss_pred Ccc
Confidence 543
No 79
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=93.72 E-value=0.12 Score=54.84 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=52.3
Q ss_pred CCCChHHHHHHHHHhCCCCCeEEEEeeeCCC-----------CC-CeEEEEEEECCccceeEEEeeccchhHHHHHHHHH
Q psy5350 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAI-----------NE-PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKS 141 (377)
Q Consensus 74 ~~~~pks~L~E~~q~~~~~p~Y~~~~~~G~~-----------h~-~~F~~~v~v~~~~~~~~~~g~G~sKK~Ae~~AA~~ 141 (377)
....||..++ |+.|..+.|++.+..... .- -.|.|.+.+.+- .+..+.-.-||+|||.||+.
T Consensus 15 ~~~~pk~~~~---q~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~---~~~~~~~~~kkd~eq~aa~~ 88 (950)
T 3htx_A 15 HTPTPKAIIH---QKFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEF---SVVSNVFKKKKDSEQSAAEL 88 (950)
T ss_dssp CCCCCHHHHH---HTTGGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSC---EEECCCBSCHHHHHHHHHHH
T ss_pred CCCCHHHHHH---HHhCcceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCc---eEecchhhccccHHHHHHHH
Confidence 3457888765 566767899874422111 11 289999999886 44578889999999999999
Q ss_pred HHHHHhcCC
Q psy5350 142 VLDQLIGRD 150 (377)
Q Consensus 142 aL~~L~~~~ 150 (377)
||++|...+
T Consensus 89 al~~~g~~~ 97 (950)
T 3htx_A 89 ALDKLGIRP 97 (950)
T ss_dssp HHTTTTSTT
T ss_pred HHHHhCCCc
Confidence 999998754
No 80
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=74.56 E-value=3.4 Score=43.94 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCCChhHHHHHHHHhcCCCCCeeEeeccc-----C------CCCCc-eEEEEEEEccE-EEEEecCCHHHHHHHHHHHHH
Q psy5350 164 VEPNPVGQLQEACMTRKWPPPVYETEETT-----G------LPHER-MFTVCAYVNVY-KEEGMGKSKKIAKREAALNML 230 (377)
Q Consensus 164 ~~~n~~~~L~e~~q~~~~~~p~y~~~~~~-----G------p~h~~-~F~~~v~v~~~-~~~G~G~sKK~Ak~~AA~~~l 230 (377)
....|+..+++. .|-. +.|.+.+.. | |...+ .|.|.+.+-+. +..++-+-||+|+|.||+.||
T Consensus 15 ~~~~pk~~~~q~---~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al 90 (950)
T 3htx_A 15 HTPTPKAIIHQK---FGAK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELAL 90 (950)
T ss_dssp CCCCCHHHHHHT---TGGG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---hCcc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHH
Confidence 345788888754 3333 589774321 1 12222 56666666564 456888999999999999999
Q ss_pred HHhhcCCC
Q psy5350 231 KFLETVPI 238 (377)
Q Consensus 231 ~~L~~~~~ 238 (377)
++|+..+.
T Consensus 91 ~~~g~~~~ 98 (950)
T 3htx_A 91 DKLGIRPQ 98 (950)
T ss_dssp TTTTSTTT
T ss_pred HHhCCCcc
Confidence 99998664
No 81
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=65.21 E-value=25 Score=28.49 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCceEEEEeecccCCCCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHHH
Q psy5350 308 ILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQ 373 (377)
Q Consensus 308 i~~L~el~q~~~~~~~~~~~~~~g~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L~ 373 (377)
+.+|.++++...|++++. .+.| ..++.+...+. .+.|+|.++|.++-+.+++.|-+
T Consensus 41 ~~lL~~~L~~y~f~~e~i--~EdG-----s~t~~l~eldi---~~~g~T~eeA~~~li~~l~eYAe 96 (139)
T 3k6q_A 41 EQIIKDLLQDLKIHAELS--KEDG-----IIIGTIDGFDL---VVSGESEQEVIQKLAEDLLEYAQ 96 (139)
T ss_dssp HHHHHHHTTTCCEEEEEE--EETT-----EEEEEETTTCC---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCceEEE--ecCC-----eEEEEecCcee---EeeCCCHHHHHHHHHHHHHHHHH
Confidence 789999997777777665 3344 25555555443 58999999999999999998643
No 82
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=49.14 E-value=36 Score=27.61 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHhcCCCCCeeEeecccCCCCCceEEEEEEEccEEEEEecCCHHHHHHHHHHHHHHHhhc
Q psy5350 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235 (377)
Q Consensus 167 n~~~~L~e~~q~~~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~G~sKK~Ak~~AA~~~l~~L~~ 235 (377)
--+..|.++|+...+ .++++.++| ++++.+.+.--.+.|+|+.+|.+..+..+++.-+.
T Consensus 39 is~~lL~~~L~~y~f---~~e~i~EdG-------s~t~~l~eldi~~~g~T~eeA~~~li~~l~eYAed 97 (139)
T 3k6q_A 39 FSEQIIKDLLQDLKI---HAELSKEDG-------IIIGTIDGFDLVVSGESEQEVIQKLAEDLLEYAQD 97 (139)
T ss_dssp EEHHHHHHHTTTCCE---EEEEEEETT-------EEEEEETTTCCEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHhcccC---ceEEEecCC-------eEEEEecCceeEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 445689999954443 455555555 35678888877899999999999999999877654
No 83
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=42.33 E-value=42 Score=24.70 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHhhcCceEEEEeecccCCCCceEEEEEEecCCceEEEeecCCHHHHHHHHHHHHHHHHHh
Q psy5350 310 YLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQI 374 (377)
Q Consensus 310 ~L~el~q~~~~~~~~~~~~~~g~~~~~~~~v~v~~~p~~~~~G~G~tkk~Ak~~AA~~aL~~L~~ 374 (377)
.|.++.+..-....|..+++. + .+.+.+-..|. |...|.|.++|..+|-..+-.+|..
T Consensus 6 ~~~~y~~~aM~~~~Y~ii~ed---g--~y~~~~Pdlpg--c~t~G~T~eEA~~~a~eAl~~~le~ 63 (87)
T 2dsy_A 6 TLTRYLEEAMARARYELIADE---E--PYYGEIPDLPG--VWATGKSLKECEANLQAALEDWLLF 63 (87)
T ss_dssp HHHHHHHHHHHTCEEEECSSS---S--CEEEECTTSTT--CEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhceeEEEecC---C--EEEEEECCCCC--eeEeeCCHHHHHHHHHHHHHHHHHH
Confidence 444454432223455555432 2 25666655554 5578999999999988877766654
No 84
>1j5u_A Archease, possible chaperone; structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: d.208.1.1
Probab=25.05 E-value=72 Score=25.70 Aligned_cols=25 Identities=24% Similarity=0.017 Sum_probs=23.0
Q ss_pred eEEEeecCCHHHHHHHHHHHHHHHH
Q psy5350 348 TVFCGTGASIEVAKIEAVYRALDFL 372 (377)
Q Consensus 348 ~~~~G~G~tkk~Ak~~AA~~aL~~L 372 (377)
+-+++.|+|.++|=.+||.++..++
T Consensus 23 v~i~a~G~tleEaFe~aa~Am~~~m 47 (136)
T 1j5u_A 23 IAYEISGNSYEELLEEARNILLEEE 47 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCHHHHHHHHHHHHHHhc
Confidence 5678999999999999999999887
Done!