Your job contains 1 sequence.
>psy5350
MARVSNVSDEVEDKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIKQIPKVSTNNLPL
EEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESR
LYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRK
WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEI
PEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL
IDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVA
KIEAVYRALDFLQIMNR
The BLAST search returned 33 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5350
(377 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032515 - symbol:loqs "loquacious" species:7227 "D... 368 1.3e-57 2
ZFIN|ZDB-GENE-030131-8085 - symbol:tarbp2 "TAR (HIV) RNA ... 256 1.5e-35 2
UNIPROTKB|Q7ZYA5 - symbol:prkra-a "Interferon-inducible d... 251 1.7e-33 2
UNIPROTKB|Q91836 - symbol:prkra-b "Interferon-inducible d... 243 2.0e-32 2
ZFIN|ZDB-GENE-050309-206 - symbol:prkra "protein kinase, ... 244 3.0e-30 2
UNIPROTKB|Q0IIG6 - symbol:TARBP2 "RISC-loading complex su... 240 3.9e-30 2
MGI|MGI:103027 - symbol:Tarbp2 "TAR (HIV) RNA binding pro... 238 7.8e-30 2
RGD|1307375 - symbol:Tarbp2 "TAR (HIV-1) RNA binding prot... 237 1.1e-29 2
UNIPROTKB|Q3SWU0 - symbol:Tarbp2 "RISC-loading complex su... 237 1.1e-29 2
UNIPROTKB|F1SFP3 - symbol:TARBP2 "Uncharacterized protein... 236 1.7e-29 2
UNIPROTKB|Q15633 - symbol:TARBP2 "RISC-loading complex su... 233 4.7e-29 2
UNIPROTKB|J9NVY5 - symbol:TARBP2 "Uncharacterized protein... 229 6.3e-29 2
UNIPROTKB|E2RMV1 - symbol:TARBP2 "Uncharacterized protein... 229 1.7e-28 2
UNIPROTKB|Q2HJ92 - symbol:PRKRA "Interferon-inducible dou... 184 3.2e-21 2
RGD|1306707 - symbol:Prkra "protein kinase, interferon in... 185 6.2e-21 2
UNIPROTKB|Q4V8C7 - symbol:Prkra "Interferon-inducible dou... 185 6.2e-21 2
UNIPROTKB|J9P4M2 - symbol:PRKRA "Uncharacterized protein"... 184 6.5e-21 2
UNIPROTKB|F1RZE0 - symbol:PRKRA "Uncharacterized protein"... 184 6.5e-21 2
MGI|MGI:1344375 - symbol:Prkra "protein kinase, interfero... 183 6.8e-21 2
UNIPROTKB|O75569 - symbol:PRKRA "Interferon-inducible dou... 184 1.3e-20 2
UNIPROTKB|E2RQ94 - symbol:PRKRA "Uncharacterized protein"... 218 7.8e-16 1
UNIPROTKB|B4DJC7 - symbol:PRKRA "cDNA FLJ60590, highly si... 120 6.0e-14 2
UNIPROTKB|F8VZ57 - symbol:TARBP2 "RISC-loading complex su... 130 1.4e-11 2
ZFIN|ZDB-GENE-030131-6372 - symbol:stau1 "staufen, RNA bi... 176 2.3e-11 2
UNIPROTKB|Q5JW30 - symbol:STAU1 "Double-stranded RNA-bind... 173 2.7e-11 2
MGI|MGI:1338864 - symbol:Stau1 "staufen (RNA binding prot... 180 6.0e-11 1
UNIPROTKB|H3BV98 - symbol:TARBP2 "RISC-loading complex su... 153 2.3e-10 1
UNIPROTKB|I3L9H8 - symbol:STAU1 "Uncharacterized protein"... 162 2.4e-10 2
UNIPROTKB|F1Q1C5 - symbol:STAU1 "Uncharacterized protein"... 165 4.1e-10 2
UNIPROTKB|J9P393 - symbol:STAU1 "Uncharacterized protein"... 165 6.2e-10 2
UNIPROTKB|O95793 - symbol:STAU1 "Double-stranded RNA-bind... 162 8.3e-10 2
UNIPROTKB|F1NHE0 - symbol:STAU1 "Uncharacterized protein"... 170 1.4e-09 1
UNIPROTKB|F1MH34 - symbol:F1MH34 "Uncharacterized protein... 164 2.3e-09 2
UNIPROTKB|F8VP94 - symbol:TARBP2 "RISC-loading complex su... 142 3.6e-09 1
UNIPROTKB|F8VYK3 - symbol:TARBP2 "RISC-loading complex su... 140 6.0e-09 1
UNIPROTKB|F8VYK6 - symbol:TARBP2 "RISC-loading complex su... 140 6.0e-09 1
UNIPROTKB|F8VZZ7 - symbol:TARBP2 "RISC-loading complex su... 140 6.0e-09 1
UNIPROTKB|F1LMA8 - symbol:Stau1 "Protein Stau1" species:1... 161 6.6e-09 1
UNIPROTKB|Q9ET50 - symbol:Stau1 "Staufen isoform Stau+I6"... 161 8.4e-09 1
UNIPROTKB|F1NCF1 - symbol:STAU2 "Uncharacterized protein"... 160 1.4e-08 1
UNIPROTKB|F1NHD1 - symbol:STAU1 "Uncharacterized protein"... 161 1.5e-08 1
UNIPROTKB|Q6JPI2 - symbol:Stau "Staufen" species:8355 "Xe... 155 1.9e-08 2
UNIPROTKB|E5RJN7 - symbol:STAU2 "Double-stranded RNA-bind... 152 3.3e-08 1
UNIPROTKB|F8VPI7 - symbol:STAU2 "Double-stranded RNA-bind... 152 8.0e-08 1
MGI|MGI:1352508 - symbol:Stau2 "staufen (RNA binding prot... 153 8.3e-08 1
RGD|621479 - symbol:Stau2 "staufen, RNA binding protein, ... 153 8.3e-08 1
UNIPROTKB|F1RWI7 - symbol:STAU2 "Uncharacterized protein"... 150 8.3e-08 1
UNIPROTKB|E7EPX0 - symbol:STAU2 "Double-stranded RNA-bind... 152 8.3e-08 1
UNIPROTKB|E7EVJ4 - symbol:STAU2 "Double-stranded RNA-bind... 152 8.9e-08 1
UNIPROTKB|E9PH62 - symbol:STAU2 "Double-stranded RNA-bind... 152 9.7e-08 1
UNIPROTKB|E2QVY7 - symbol:STAU2 "Uncharacterized protein"... 151 1.0e-07 1
UNIPROTKB|Q9NUL3 - symbol:STAU2 "Double-stranded RNA-bind... 152 1.1e-07 1
UNIPROTKB|E2QVY6 - symbol:E2QVY6 "Uncharacterized protein... 151 1.2e-07 1
UNIPROTKB|F6Y2K0 - symbol:STAU2 "Uncharacterized protein"... 151 1.4e-07 1
UNIPROTKB|F6Y2K7 - symbol:STAU2 "Uncharacterized protein"... 151 1.6e-07 1
UNIPROTKB|F8VTT7 - symbol:TARBP2 "RISC-loading complex su... 123 4.3e-07 1
UNIPROTKB|Q5JW28 - symbol:STAU1 "Double-stranded RNA-bind... 133 6.3e-07 1
FB|FBgn0003520 - symbol:stau "staufen" species:7227 "Dros... 117 1.2e-06 3
FB|FBgn0031951 - symbol:r2d2 "r2d2" species:7227 "Drosoph... 137 1.6e-06 1
UNIPROTKB|G5E523 - symbol:STAU2 "Uncharacterized protein"... 134 1.9e-06 1
UNIPROTKB|F1NCF0 - symbol:STAU2 "Uncharacterized protein"... 139 2.2e-06 1
ZFIN|ZDB-GENE-040426-687 - symbol:stau2 "staufen, RNA bin... 140 2.9e-06 1
UNIPROTKB|G5EA18 - symbol:STAU2 "Double-stranded RNA-bind... 133 3.8e-06 1
UNIPROTKB|E7EVI1 - symbol:STAU2 "Double-stranded RNA-bind... 135 4.4e-06 1
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 127 3.1e-05 3
ZFIN|ZDB-GENE-080422-1 - symbol:eif2ak2 "eukaryotic trans... 126 0.00010 1
UNIPROTKB|Q91550 - symbol:ilf3-a "Interleukin enhancer-bi... 97 0.00035 2
UNIPROTKB|Q2TAV5 - symbol:ilf3 "CBTF122 protein" species:... 97 0.00036 2
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 111 0.00061 1
UNIPROTKB|Q6GL57 - symbol:ilf3 "Interleukin enhancer-bind... 93 0.00086 2
>FB|FBgn0032515 [details] [associations]
symbol:loqs "loquacious" species:7227 "Drosophila
melanogaster" [GO:0003725 "double-stranded RNA binding"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030718 "germ-line stem
cell maintenance" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA;IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0070918 "production of small RNA
involved in gene silencing by RNA" evidence=IDA] [GO:0010586 "miRNA
metabolic process" evidence=IDA] [GO:0070920 "regulation of
production of small RNA involved in gene silencing by RNA"
evidence=IDA] [GO:0016442 "RNA-induced silencing complex"
evidence=IPI] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005737 EMBL:AE014134
Gene3D:3.30.160.20 GO:GO:0007417 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0030422 GO:GO:0030718 GO:GO:0048132
GeneTree:ENSGT00530000063014 HSSP:Q91836 FlyBase:FBgn0032515
GO:GO:0070920 UniGene:Dm.421 GeneID:34751 KEGG:dme:Dmel_CG6866
CTD:34751 GenomeRNAi:34751 NextBio:790023 EMBL:AY071070
EMBL:DQ118034 RefSeq:NP_609646.1 SMR:Q9VJY9 DIP:DIP-18138N
IntAct:Q9VJY9 STRING:Q9VJY9 EnsemblMetazoa:FBtr0080498
UCSC:CG6866-RB InParanoid:Q9VJY9 OMA:QFEVTYV Uniprot:Q9VJY9
Length = 465
Score = 368 (134.6 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 92/222 (41%), Positives = 129/222 (58%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTV-CAYVNVYKEEGMGKSKKIA 221
K NP+G LQE CM R+WPPP YETE GLPHER+FT+ C+ +N Y+E G GKSKKIA
Sbjct: 246 KTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILN-YREMGKGKSKKIA 304
Query: 222 KREAALNMLKFLETVPIE---IPEKKQGE-DVDEKGESNGLKHTHDSTF--LTPQILKKI 275
KR AA M L+ PI+ I + GE + + + N D + LT Q K+
Sbjct: 305 KRLAAHRMWMRLQETPIDSGKISDSICGELEGEPRSSENYYGELKDISVPTLTTQHSNKV 364
Query: 276 QQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADG 335
Q+H T G L KL T +++ D I L +++ E ++ V++VDIEEK+ +
Sbjct: 365 SQFHKTLKNAT-GKKLLKLQKTCLKNNKI-DYIKLLGEIATENQFEVTYVDIEEKTFSGQ 422
Query: 336 FQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMNR 377
FQ L+QL+T PV V G+G + A+ A AL++L+IM +
Sbjct: 423 FQCLVQLSTLPVGVCHGSGPTAADAQRHAAQNALEYLKIMTK 464
Score = 242 (90.2 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 48/93 (51%), Positives = 68/93 (73%)
Query: 58 LPLEEAARL--EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISL 115
LP +EA + E +TPVS++QELLSRRG P YEL+QIEGAI+EP F++R+S
Sbjct: 114 LPSDEALKFVSETDANGLAMKTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSF 173
Query: 116 TSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIG 148
+ + A+G+G+SKKEAKH AA++++D+LIG
Sbjct: 174 KDKDTPFTAMGAGRSKKEAKHAAARALIDKLIG 206
>ZFIN|ZDB-GENE-030131-8085 [details] [associations]
symbol:tarbp2 "TAR (HIV) RNA binding protein 2"
species:7955 "Danio rerio" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-8085 GO:GO:0005737 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0031047 eggNOG:NOG245126 HOGENOM:HOG000231919
CTD:6895 OrthoDB:EOG48GW3W EMBL:BC055390 IPI:IPI00481011
RefSeq:NP_956291.1 UniGene:Dr.80037 HSSP:Q91836
ProteinModelPortal:Q7SXR1 SMR:Q7SXR1 STRING:Q7SXR1 PRIDE:Q7SXR1
GeneID:336141 KEGG:dre:336141 InParanoid:Q7SXR1 NextBio:20811460
Uniprot:Q7SXR1
Length = 346
Score = 256 (95.2 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 77/243 (31%), Positives = 120/243 (49%)
Query: 145 QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCA 204
++ G + M + + E NPVG LQE + + W P Y + +G H + FT+
Sbjct: 117 EMEGECPQSEMKSSSSTQQAECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC 176
Query: 205 YVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVD-----------EKG 253
V + E G G SKK+AKR AA ML + VP+++ + E D E G
Sbjct: 177 RVERFVEIGSGTSKKLAKRNAAAKMLSRIHDVPVDMRSSHEAEAEDDTFNMQIGGRLEGG 236
Query: 254 ESNGLKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNLIDEVEDPIL-YLE 312
+S GL T DS L +KI Q PL + D ++ L
Sbjct: 237 KSKGLGCTWDS--LRNSAGEKILQLRC-------HPLGQS--------DSIDSNFCSLLR 279
Query: 313 DLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
+LS+E ++ VS++DIEE+S + +Q L++L+T P+TV G +S++ A+ A + AL +L
Sbjct: 280 ELSEEQRFGVSYLDIEERSLSGLYQCLVELSTQPITVCHGFASSLDAARASAAHNALQYL 339
Query: 373 QIM 375
+IM
Sbjct: 340 KIM 342
Score = 144 (55.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ +N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+S+ + G
Sbjct: 21 QMLAVNPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA++ L L G
Sbjct: 76 HGPSKKAAKHKAAEAALKMLKG 97
>UNIPROTKB|Q7ZYA5 [details] [associations]
symbol:prkra-a "Interferon-inducible double stranded
RNA-dependent protein kinase activator A homolog A" species:8355
"Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=ISS]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0005634 GO:GO:0005737 GO:GO:0048471
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0030422 EMBL:BC043873
RefSeq:NP_001079500.1 UniGene:Xl.852 ProteinModelPortal:Q7ZYA5
SMR:Q7ZYA5 GeneID:379187 KEGG:xla:379187 CTD:8575
Xenbase:XB-GENE-940708 Uniprot:Q7ZYA5
Length = 309
Score = 251 (93.4 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 67/202 (33%), Positives = 102/202 (50%)
Query: 51 PKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFK 110
PK+S+ E+ L+ MR TP+ L+ E ++ G P Y L + EG + P F
Sbjct: 10 PKMSS-----EKPTSLDAMRATNPCETPIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFT 64
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF-------K 163
+R+ + ++G G SKK AK AA+ L+ L G D K + + L +
Sbjct: 65 FRLVIGD----ITSLGEGPSKKTAKQKAAEFALNILRG-DTSKCLPVTDTLRDPKKPPNQ 119
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
++ NPVG LQE + + W P Y + +G PH+R FT+ V + E G G SK++AKR
Sbjct: 120 MQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKR 179
Query: 224 EAALNMLKFLETVPIE-IPEKK 244
AA +L +T+ + IP K
Sbjct: 180 VAAEKLLTKFKTISTDNIPLNK 201
Score = 130 (50.8 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 306 DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAV 365
D + L+D+++EL + ++++DI+E S +Q L +L+T P+TV GTG S A +A
Sbjct: 236 DYVKMLKDVAEELDFNLTYLDIDELSVNGQYQCLAELSTNPITVCHGTGISCGNAHNDAA 295
Query: 366 YRALDFLQIM 375
+ AL +L+IM
Sbjct: 296 HNALQYLKIM 305
>UNIPROTKB|Q91836 [details] [associations]
symbol:prkra-b "Interferon-inducible double stranded
RNA-dependent protein kinase activator A homolog B" species:8355
"Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=ISS]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0005737 GO:GO:0048471 GO:GO:0005730
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0030422 UniGene:Xl.852
Xenbase:XB-GENE-940708 EMBL:M96370 PIR:S27945 PDB:1DI2 PDBsum:1DI2
ProteinModelPortal:Q91836 SMR:Q91836 EvolutionaryTrace:Q91836
Uniprot:Q91836
Length = 298
Score = 243 (90.6 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 63/192 (32%), Positives = 95/192 (49%)
Query: 61 EEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESR 120
E+ L MR TP+ L+ E ++ G P Y L + EG + P F +R+ +
Sbjct: 4 EKPTSLNAMRATNPCETPIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFTFRLVIGD--- 60
Query: 121 LYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLF-------KVEPNPVGQLQ 173
++G G SKK K AA+ L+ L G D K + + L +++ NPVG LQ
Sbjct: 61 -ITSLGEGPSKKTPKQKAAEFALNILRG-DTSKCLPVTDTLRDPKKPPNQMQENPVGSLQ 118
Query: 174 EACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFL 233
E + + W P Y + +G PH+R FT+ V + E G G SK++AKR AA +L
Sbjct: 119 ELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKF 178
Query: 234 ETVPIE-IPEKK 244
+T+ + IP K
Sbjct: 179 KTISTDNIPLNK 190
Score = 130 (50.8 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 306 DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAV 365
D + L+D+++EL + ++++DI+E S +Q L +L+T P+TV GTG S A +A
Sbjct: 225 DYVKMLKDVAEELDFNLTYLDIDELSVNGQYQCLAELSTNPITVCHGTGISCGNAHNDAA 284
Query: 366 YRALDFLQIM 375
+ AL +L+IM
Sbjct: 285 HNALQYLKIM 294
Score = 91 (37.1 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLT 116
LP+ + R N PV +QEL ++G P+Y + Q G P K ++T
Sbjct: 93 LPVTDTLRDPKKPPNQMQENPVGSLQELAVQKGWRLPEYTVAQESG----PPHKREFTIT 148
Query: 117 SESRLYVAIGSGKSKKEAKHNAAKSVL 143
+V GSG SK+ AK AA+ +L
Sbjct: 149 CRVETFVETGSGTSKQVAKRVAAEKLL 175
>ZFIN|ZDB-GENE-050309-206 [details] [associations]
symbol:prkra "protein kinase, interferon-inducible
double stranded RNA dependent activator" species:7955 "Danio rerio"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0030422
"production of siRNA involved in RNA interference" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001159 InterPro:IPR007110
Pfam:PF00035 PROSITE:PS50137 PROSITE:PS50835 SMART:SM00358
InterPro:IPR014720 ZFIN:ZDB-GENE-050309-206 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 GeneTree:ENSGT00530000063014
EMBL:FP102120 IPI:IPI00920134 PRIDE:F1Q8C8
Ensembl:ENSDART00000140917 Bgee:F1Q8C8 Uniprot:F1Q8C8
Length = 289
Score = 244 (91.0 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 60/166 (36%), Positives = 91/166 (54%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D+TP+ L+ E + +APKYELI +G ++P F + +++ + G G +KK A
Sbjct: 15 DKTPIQLLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTIGEVT----CKGRGSTKKAA 70
Query: 135 KHNAAKSVLDQLIGRDDEKLMCQKENLFKVEP----NPVGQLQEACMTRKWPPPVYETEE 190
KH AA++ L +L+ RD + + + N E NPVG LQE M R W P Y
Sbjct: 71 KHEAAEAAL-KLLKRDSQIIDQRDNNGLSPEAGEASNPVGILQELAMQRVWCLPEYVVFM 129
Query: 191 TTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
TG H + FT+ + +E G G SKK+A+R AA NM+ L+++
Sbjct: 130 ETGPGHMKEFTIACRLEGLEETGSGSSKKLARRAAAENMIAKLQSL 175
Score = 108 (43.1 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 306 DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAV 365
D I L ++S EL ++V+++DI+E + +Q L++L+T PVTV G+G + A A
Sbjct: 216 DYIQMLLEISLELGFQVTYIDIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAA 275
Query: 366 YRALDFLQIM 375
+ AL +++++
Sbjct: 276 HNALQYIKMV 285
Score = 71 (30.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 22/73 (30%), Positives = 31/73 (42%)
Query: 184 PVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEK 243
P YE G H+ F + +G G +KK AK EAA LK L+ I ++
Sbjct: 33 PKYELIHADGDAHQPSFMFSVTIGEVTCKGRGSTKKAAKHEAAEAALKLLKRDSQIIDQR 92
Query: 244 KQGEDVDEKGESN 256
E GE++
Sbjct: 93 DNNGLSPEAGEAS 105
>UNIPROTKB|Q0IIG6 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9913 "Bos taurus" [GO:0035197 "siRNA binding" evidence=ISS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0046782
"regulation of viral transcription" evidence=ISS] [GO:0030423
"targeting of mRNA for destruction involved in RNA interference"
evidence=ISS] [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0050689 "negative regulation of defense response
to virus by host" evidence=ISS] [GO:0031054 "pre-miRNA processing"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0035280 "miRNA loading onto RISC involved in gene silencing by
miRNA" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005634 GO:GO:0005737
GO:GO:0048471 GO:GO:0006417 Gene3D:3.30.160.20 GO:GO:0003725
GO:GO:0035197 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0045070 GO:GO:0050689 eggNOG:NOG245126
GeneTree:ENSGT00530000063014 HOGENOM:HOG000231919 EMBL:BC122653
EMBL:CK769751 IPI:IPI00712425 RefSeq:NP_001069146.2 UniGene:Bt.4728
STRING:Q0IIG6 Ensembl:ENSBTAT00000000558 GeneID:514674
KEGG:bta:514674 CTD:6895 InParanoid:Q0IIG6 OMA:CRVERFV
OrthoDB:EOG48GW3W NextBio:20871458 GO:GO:0035280 GO:GO:0046782
Uniprot:Q0IIG6
Length = 366
Score = 240 (89.5 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 76/216 (35%), Positives = 112/216 (51%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 157 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 216
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + TVP++ + + E D+ S G+ D L+ T S
Sbjct: 217 AAAKMLLRVHTVPLDARDGNEAEPEDDHF-SIGVGSRLDG-------LRNRGPGCTWDSL 268
Query: 285 KTKGPLLEKLLSTRNL-IDEVE--DPIL--YLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
+ + EK+LS R+ + + P L +LS+E + VS++DIEE S + Q L
Sbjct: 269 RNS--VGEKILSLRSCSLGSLGALGPACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCL 326
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++L+T P TV G+ A+ E A+ EA RAL +L+IM
Sbjct: 327 VELSTQPATVCHGSAATREAARGEAARRALQYLKIM 362
Score = 142 (55.0 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>MGI|MGI:103027 [details] [associations]
symbol:Tarbp2 "TAR (HIV) RNA binding protein 2" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=ISO] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0031047
"gene silencing by RNA" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0035197 "siRNA binding" evidence=ISO]
[GO:0035280 "miRNA loading onto RISC involved in gene silencing by
miRNA" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0045070 "positive regulation of viral
genome replication" evidence=ISO] [GO:0046782 "regulation of viral
transcription" evidence=ISO] [GO:0050689 "negative regulation of
defense response to virus by host" evidence=ISO] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
MGI:MGI:103027 GO:GO:0005634 GO:GO:0005737 GO:GO:0048471
GO:GO:0006417 Gene3D:3.30.160.20 EMBL:CH466550 GO:GO:0003725
GO:GO:0035197 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0045070 GO:GO:0050689 eggNOG:NOG245126
GeneTree:ENSGT00530000063014 HOGENOM:HOG000231919
HOVERGEN:HBG001700 CTD:6895 OMA:CRVERFV OrthoDB:EOG48GW3W
GO:GO:0035280 GO:GO:0046782 EMBL:U79962 EMBL:BC002028
IPI:IPI00125574 RefSeq:NP_033345.2 UniGene:Mm.291485
ProteinModelPortal:P97473 SMR:P97473 IntAct:P97473 STRING:P97473
PhosphoSite:P97473 PaxDb:P97473 PRIDE:P97473
Ensembl:ENSMUST00000023813 GeneID:21357 KEGG:mmu:21357
InParanoid:Q99M41 NextBio:300566 Bgee:P97473 CleanEx:MM_TARBP2
Genevestigator:P97473 GermOnline:ENSMUSG00000023051 Uniprot:P97473
Length = 365
Score = 238 (88.8 bits), Expect = 7.8e-30, Sum P(2) = 7.8e-30
Identities = 73/216 (33%), Positives = 111/216 (51%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 156 ECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 215
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + TVP++ + + E D+ S G+ D L+ T S
Sbjct: 216 AAAKMLLRVHTVPLDARDGNEAEP-DDDHFSIGVSSRLDG-------LRNRGPGCTWDSL 267
Query: 285 KTKGPLLEKLLSTRNL----IDEVEDPIL-YLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
+ + EK+LS R+ + + L +LS+E + VS++DIEE S + Q L
Sbjct: 268 RNS--VGEKILSLRSCSVGSLGALGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCL 325
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++L+T P TV G+ + E A+ +A +RAL +L+IM
Sbjct: 326 VELSTQPATVCYGSATTREAARGDAAHRALQYLRIM 361
Score = 142 (55.0 bits), Expect = 7.8e-30, Sum P(2) = 7.8e-30
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>RGD|1307375 [details] [associations]
symbol:Tarbp2 "TAR (HIV-1) RNA binding protein 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016442 "RNA-induced
silencing complex" evidence=IEA;ISO;ISS] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IEA;ISO;ISS]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA;ISO;ISS] [GO:0031054 "pre-miRNA
processing" evidence=IEA;ISO;ISS] [GO:0035197 "siRNA binding"
evidence=IEA;ISO;ISS] [GO:0035280 "miRNA loading onto RISC involved
in gene silencing by miRNA" evidence=IEA;ISO] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0045070 "positive
regulation of viral genome replication" evidence=IEA;ISO;ISS]
[GO:0046782 "regulation of viral transcription"
evidence=IEA;ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0050689 "negative regulation of defense response
to virus by host" evidence=IEA;ISO;ISS] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
RGD:1307375 GO:GO:0005634 GO:GO:0005737 GO:GO:0048471 GO:GO:0006417
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0035197 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 EMBL:CH474035
GO:GO:0045070 GO:GO:0050689 eggNOG:NOG245126 HOGENOM:HOG000231919
CTD:6895 OrthoDB:EOG48GW3W GO:GO:0035280 GO:GO:0046782
EMBL:BC104690 IPI:IPI00366486 RefSeq:NP_001030113.1
UniGene:Rn.17227 HSSP:Q15633 ProteinModelPortal:Q3SWU0 SMR:Q3SWU0
STRING:Q3SWU0 GeneID:363006 KEGG:rno:363006 UCSC:RGD:1307375
NextBio:682113 ArrayExpress:Q3SWU0 Genevestigator:Q3SWU0
Uniprot:Q3SWU0
Length = 365
Score = 237 (88.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 80/243 (32%), Positives = 118/243 (48%)
Query: 138 AAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHE 197
AA V L+ R M + + E NPVG LQE + + W P Y + +G H
Sbjct: 129 AAAPVPSALLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHR 188
Query: 198 RMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG 257
+ FT+ V + E G G SKK+AKR AA ML + TVP++ + + E D+ S G
Sbjct: 189 KEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEP-DDDHFSIG 247
Query: 258 LKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLE 312
+ D L+ T S + + EK+LS RN + + L
Sbjct: 248 VSSRLDG-------LRNRGPGCTWDSLRNS--VGEKILSLRNCSVGSLGSLGSACCSILS 298
Query: 313 DLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
+LS E + VS++DIEE S + Q L++L+T P TV G+ + E A+ +A RAL +L
Sbjct: 299 ELSAEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAARGDAARRALQYL 358
Query: 373 QIM 375
+IM
Sbjct: 359 RIM 361
Score = 142 (55.0 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>UNIPROTKB|Q3SWU0 [details] [associations]
symbol:Tarbp2 "RISC-loading complex subunit TARBP2"
species:10116 "Rattus norvegicus" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0035280 "miRNA loading onto RISC
involved in gene silencing by miRNA" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 RGD:1307375 GO:GO:0005634 GO:GO:0005737
GO:GO:0048471 GO:GO:0006417 Gene3D:3.30.160.20 GO:GO:0003725
GO:GO:0035197 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 EMBL:CH474035 GO:GO:0045070 GO:GO:0050689
eggNOG:NOG245126 HOGENOM:HOG000231919 CTD:6895 OrthoDB:EOG48GW3W
GO:GO:0035280 GO:GO:0046782 EMBL:BC104690 IPI:IPI00366486
RefSeq:NP_001030113.1 UniGene:Rn.17227 HSSP:Q15633
ProteinModelPortal:Q3SWU0 SMR:Q3SWU0 STRING:Q3SWU0 GeneID:363006
KEGG:rno:363006 UCSC:RGD:1307375 NextBio:682113 ArrayExpress:Q3SWU0
Genevestigator:Q3SWU0 Uniprot:Q3SWU0
Length = 365
Score = 237 (88.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 80/243 (32%), Positives = 118/243 (48%)
Query: 138 AAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHE 197
AA V L+ R M + + E NPVG LQE + + W P Y + +G H
Sbjct: 129 AAAPVPSALLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHR 188
Query: 198 RMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESNG 257
+ FT+ V + E G G SKK+AKR AA ML + TVP++ + + E D+ S G
Sbjct: 189 KEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEAEP-DDDHFSIG 247
Query: 258 LKHTHDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRNL----IDEVEDPIL-YLE 312
+ D L+ T S + + EK+LS RN + + L
Sbjct: 248 VSSRLDG-------LRNRGPGCTWDSLRNS--VGEKILSLRNCSVGSLGSLGSACCSILS 298
Query: 313 DLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFL 372
+LS E + VS++DIEE S + Q L++L+T P TV G+ + E A+ +A RAL +L
Sbjct: 299 ELSAEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAARGDAARRALQYL 358
Query: 373 QIM 375
+IM
Sbjct: 359 RIM 361
Score = 142 (55.0 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>UNIPROTKB|F1SFP3 [details] [associations]
symbol:TARBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050689 "negative regulation of defense response to
virus by host" evidence=IEA] [GO:0046782 "regulation of viral
transcription" evidence=IEA] [GO:0045070 "positive regulation of
viral genome replication" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0035280 "miRNA loading
onto RISC involved in gene silencing by miRNA" evidence=IEA]
[GO:0035197 "siRNA binding" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0030422
"production of siRNA involved in RNA interference" evidence=IEA]
[GO:0016442 "RNA-induced silencing complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0035197 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 GO:GO:0045070 GO:GO:0050689
GeneTree:ENSGT00530000063014 CTD:6895 OMA:CRVERFV GO:GO:0035280
GO:GO:0046782 EMBL:CU928648 RefSeq:XP_003126242.1 UniGene:Ssc.19557
Ensembl:ENSSSCT00000000296 GeneID:100518071 KEGG:ssc:100518071
Uniprot:F1SFP3
Length = 366
Score = 236 (88.1 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 75/216 (34%), Positives = 111/216 (51%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 157 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 216
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + TVP++ + + E D+ S G+ D L+ T S
Sbjct: 217 AAAKMLLRVHTVPLDARDGNEAEP-DDDHFSLGVGSRLDG-------LRNRGPGCTWDSL 268
Query: 285 KTKGPLLEKLLSTRNL-IDEVE--DPIL--YLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
+ + EK+LS R+ + + P L +LS+E + VS++DIEE S + Q L
Sbjct: 269 RNS--VGEKILSLRSCSLGSLGALGPACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCL 326
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 327 VELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
Score = 142 (55.0 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>UNIPROTKB|Q15633 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0006469 "negative regulation of protein kinase
activity" evidence=TAS] [GO:0046782 "regulation of viral
transcription" evidence=IDA] [GO:0045070 "positive regulation of
viral genome replication" evidence=IDA] [GO:0050689 "negative
regulation of defense response to virus by host" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042803 "protein
homodimerization activity" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IMP] [GO:0031054
"pre-miRNA processing" evidence=IDA] [GO:0035280 "miRNA loading
onto RISC involved in gene silencing by miRNA" evidence=IDA]
[GO:0035197 "siRNA binding" evidence=IDA] [GO:0016442 "RNA-induced
silencing complex" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0005829 GO:GO:0005634 GO:GO:0048471
GO:GO:0006417 GO:GO:0006469 Gene3D:3.30.160.20 EMBL:CH471054
GO:GO:0006357 GO:GO:0003725 GO:GO:0035197 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 GO:GO:0045070
GO:GO:0050689 eggNOG:NOG245126 HOGENOM:HOG000231919
HOVERGEN:HBG001700 CTD:6895 OMA:CRVERFV OrthoDB:EOG48GW3W
GO:GO:0035280 GO:GO:0046782 EMBL:M60801 EMBL:U08998 EMBL:BT007140
EMBL:BC005860 EMBL:AF281068 IPI:IPI00472583 IPI:IPI00847568
PIR:G01420 RefSeq:NP_004169.3 RefSeq:NP_599150.1 RefSeq:NP_599151.2
UniGene:Hs.326 PDB:2CPN PDB:3ADL PDB:3LLH PDBsum:2CPN PDBsum:3ADL
PDBsum:3LLH ProteinModelPortal:Q15633 SMR:Q15633 DIP:DIP-29665N
IntAct:Q15633 MINT:MINT-92451 STRING:Q15633 PhosphoSite:Q15633
DMDM:209572714 PaxDb:Q15633 PRIDE:Q15633 DNASU:6895
Ensembl:ENST00000266987 Ensembl:ENST00000394357
Ensembl:ENST00000456234 GeneID:6895 KEGG:hsa:6895 UCSC:uc001sdo.3
GeneCards:GC12P053890 HGNC:HGNC:11569 HPA:HPA051181 MIM:605053
neXtProt:NX_Q15633 PharmGKB:PA36334 InParanoid:Q15633
PhylomeDB:Q15633 BindingDB:Q15633 ChEMBL:CHEMBL2098
EvolutionaryTrace:Q15633 GenomeRNAi:6895 NextBio:26949
ArrayExpress:Q15633 Bgee:Q15633 CleanEx:HS_TARBP2
Genevestigator:Q15633 GermOnline:ENSG00000139546 Uniprot:Q15633
Length = 366
Score = 233 (87.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 75/216 (34%), Positives = 111/216 (51%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 157 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 216
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + TVP++ + + E D+ S G+ D L+ T S
Sbjct: 217 AAAKMLLRVHTVPLDARDGNEVEP-DDDHFSIGVGSRLDG-------LRNRGPGCTWDSL 268
Query: 285 KTKGPLLEKLLSTRNL-IDEVE--DPIL--YLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
+ + EK+LS R+ + + P L +LS+E + VS++DIEE S + Q L
Sbjct: 269 RNS--VGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLCQCL 326
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 327 VELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
Score = 142 (55.0 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>UNIPROTKB|J9NVY5 [details] [associations]
symbol:TARBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GeneTree:ENSGT00530000063014 EMBL:AAEX03014978
EMBL:AAEX03014979 Ensembl:ENSCAFT00000049535 Uniprot:J9NVY5
Length = 344
Score = 229 (85.7 bits), Expect = 6.3e-29, Sum P(2) = 6.3e-29
Identities = 74/216 (34%), Positives = 109/216 (50%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V G G SKK+AKR
Sbjct: 135 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERSSHAGSGTSKKLAKRN 194
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + TVP++ + + E D+ S G+ D L+ T S
Sbjct: 195 AAAKMLLRVHTVPLDARDGTEAEP-DDDHFSIGVGSRLDG-------LRNRGPGCTWDSL 246
Query: 285 KTKGPLLEKLLSTRNL-IDEVE--DPIL--YLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
+ + EK+LS R+ + + P L +LS+E + VS++DIEE S + Q L
Sbjct: 247 RNS--VGEKILSLRSCSLGALGALGPACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCL 304
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 305 VELSTQPATVCHGSATTREAARGEAARRALQYLKIM 340
Score = 142 (55.0 bits), Expect = 6.3e-29, Sum P(2) = 6.3e-29
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>UNIPROTKB|E2RMV1 [details] [associations]
symbol:TARBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050689 "negative regulation of defense
response to virus by host" evidence=IEA] [GO:0046782 "regulation of
viral transcription" evidence=IEA] [GO:0045070 "positive regulation
of viral genome replication" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0035280 "miRNA loading
onto RISC involved in gene silencing by miRNA" evidence=IEA]
[GO:0035197 "siRNA binding" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0030422
"production of siRNA involved in RNA interference" evidence=IEA]
[GO:0016442 "RNA-induced silencing complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0035197 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 GO:GO:0045070 GO:GO:0050689
GeneTree:ENSGT00530000063014 OMA:CRVERFV GO:GO:0035280
GO:GO:0046782 EMBL:AAEX03014978 EMBL:AAEX03014979
Ensembl:ENSCAFT00000011057 Uniprot:E2RMV1
Length = 366
Score = 229 (85.7 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 74/216 (34%), Positives = 109/216 (50%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V G G SKK+AKR
Sbjct: 157 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERSSHAGSGTSKKLAKRN 216
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKKIQQYHTVFSQ 284
AA ML + TVP++ + + E D+ S G+ D L+ T S
Sbjct: 217 AAAKMLLRVHTVPLDARDGTEAEP-DDDHFSIGVGSRLDG-------LRNRGPGCTWDSL 268
Query: 285 KTKGPLLEKLLSTRNL-IDEVE--DPIL--YLEDLSDELKYRVSFVDIEEKSKADGFQSL 339
+ + EK+LS R+ + + P L +LS+E + VS++DIEE S + Q L
Sbjct: 269 RNS--VGEKILSLRSCSLGALGALGPACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCL 326
Query: 340 LQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
++L+T P TV G+ + E A+ EA RAL +L+IM
Sbjct: 327 VELSTQPATVCHGSATTREAARGEAARRALQYLKIM 362
Score = 142 (55.0 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>UNIPROTKB|Q2HJ92 [details] [associations]
symbol:PRKRA "Interferon-inducible double stranded
RNA-dependent protein kinase activator A" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=ISS]
[GO:0042474 "middle ear morphogenesis" evidence=ISS] [GO:0042473
"outer ear morphogenesis" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0006917 "induction of apoptosis"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0005622 "intracellular" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005737 GO:GO:0048471
GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468
GO:GO:0003725 GO:GO:0030422 GO:GO:0048705 GO:GO:0042474
GO:GO:0042473 CTD:8575 EMBL:BC113246 IPI:IPI00711015
RefSeq:NP_001039335.1 UniGene:Bt.13570 ProteinModelPortal:Q2HJ92
SMR:Q2HJ92 PRIDE:Q2HJ92 Ensembl:ENSBTAT00000001451 GeneID:282875
KEGG:bta:282875 eggNOG:NOG245126 GeneTree:ENSGT00530000063014
HOGENOM:HOG000231919 InParanoid:Q2HJ92 OMA:PVTVCHG
OrthoDB:EOG41RPVB NextBio:20806403 ArrayExpress:Q2HJ92
Uniprot:Q2HJ92
Length = 313
Score = 184 (69.8 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 52/169 (30%), Positives = 77/169 (45%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVP 237
+ G H+R +T + + E G G SKK AKR AA L KF P
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 197
Score = 124 (48.7 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 292 EKL-LSTRNLIDEVE-DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTV 349
EK+ L R+L+ D I L +++ E + ++++DIEE S +Q L +L+T+P+TV
Sbjct: 224 EKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITV 283
Query: 350 FCGTGASIEVAKIEAVYRALDFLQIM 375
G+G S A+ +A + AL +L+I+
Sbjct: 284 CHGSGISCSSAQSDAAHNALQYLKII 309
Score = 88 (36.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 34/113 (30%), Positives = 49/113 (43%)
Query: 133 EAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETT 192
+++H AA +++ D K K P+ L E M K PVYE E +
Sbjct: 3 QSRHRAAAPPMER---EDSGTFSLGKMITAKPGKTPIQVLHEYGMKTK-NIPVYECERSD 58
Query: 193 GLPHERMFTVCAYVNVYKEEGMGKSKKIAKR---EAALNMLKFLETVPIEIPE 242
H FT V G G SKK+AK EAA+N+LK ++ +P+
Sbjct: 59 VQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD 111
>RGD|1306707 [details] [associations]
symbol:Prkra "protein kinase, interferon inducible double
stranded RNA dependent activator" species:10116 "Rattus norvegicus"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005622 "intracellular"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006468 "protein phosphorylation" evidence=IEA;ISO] [GO:0006917
"induction of apoptosis" evidence=IEA;ISO] [GO:0006950 "response to
stress" evidence=IEA;ISO] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA;ISO;ISS] [GO:0042473 "outer ear
morphogenesis" evidence=IEA;ISO] [GO:0042474 "middle ear
morphogenesis" evidence=IEA;ISO] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 RGD:1306707 GO:GO:0005737 GO:GO:0048471
GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468
GO:GO:0003725 GO:GO:0030422 GO:GO:0048705 GO:GO:0042474
GO:GO:0042473 CTD:8575 eggNOG:NOG245126 HOGENOM:HOG000231919
OrthoDB:EOG41RPVB HOVERGEN:HBG001700 EMBL:BC097446 IPI:IPI00187767
RefSeq:NP_001019951.1 UniGene:Rn.3217 ProteinModelPortal:Q4V8C7
SMR:Q4V8C7 PhosphoSite:Q4V8C7 PRIDE:Q4V8C7 GeneID:311130
KEGG:rno:311130 UCSC:RGD:1306707 InParanoid:Q4V8C7 NextBio:663036
Genevestigator:Q4V8C7 GermOnline:ENSRNOG00000011195 Uniprot:Q4V8C7
Length = 313
Score = 185 (70.2 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 51/169 (30%), Positives = 78/169 (46%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E ++ P YE + + ++ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGTKTKNIPVYECERSDVQVHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVP 237
+ G H+R +T + + E G G SKK AKR AA L KF P
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 197
Score = 120 (47.3 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 292 EKL-LSTRNLIDEVE-DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTV 349
EK+ L R+L+ D I L +++ E + ++++DIEE S +Q L +L+T+P+TV
Sbjct: 224 EKINLLKRSLLSLPNTDYIQLLSEIAKEQGFSITYLDIEELSANGQYQCLAELSTSPITV 283
Query: 350 FCGTGASIEVAKIEAVYRALDFLQIM 375
G+G S A+ +A + AL +L+I+
Sbjct: 284 CHGSGISCGNAQSDAAHNALQYLKII 309
Score = 80 (33.2 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 184 PVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR---EAALNMLKFLETVPIEI 240
PVYE E + H FT V G G SKK+AK EAA+N+LK ++ +
Sbjct: 50 PVYECERSDVQVHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAV 109
Query: 241 PE 242
P+
Sbjct: 110 PD 111
>UNIPROTKB|Q4V8C7 [details] [associations]
symbol:Prkra "Interferon-inducible double stranded
RNA-dependent protein kinase activator A" species:10116 "Rattus
norvegicus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 RGD:1306707 GO:GO:0005737 GO:GO:0048471
GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468
GO:GO:0003725 GO:GO:0030422 GO:GO:0048705 GO:GO:0042474
GO:GO:0042473 CTD:8575 eggNOG:NOG245126 HOGENOM:HOG000231919
OrthoDB:EOG41RPVB HOVERGEN:HBG001700 EMBL:BC097446 IPI:IPI00187767
RefSeq:NP_001019951.1 UniGene:Rn.3217 ProteinModelPortal:Q4V8C7
SMR:Q4V8C7 PhosphoSite:Q4V8C7 PRIDE:Q4V8C7 GeneID:311130
KEGG:rno:311130 UCSC:RGD:1306707 InParanoid:Q4V8C7 NextBio:663036
Genevestigator:Q4V8C7 GermOnline:ENSRNOG00000011195 Uniprot:Q4V8C7
Length = 313
Score = 185 (70.2 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 51/169 (30%), Positives = 78/169 (46%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E ++ P YE + + ++ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGTKTKNIPVYECERSDVQVHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVP 237
+ G H+R +T + + E G G SKK AKR AA L KF P
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 197
Score = 120 (47.3 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 292 EKL-LSTRNLIDEVE-DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTV 349
EK+ L R+L+ D I L +++ E + ++++DIEE S +Q L +L+T+P+TV
Sbjct: 224 EKINLLKRSLLSLPNTDYIQLLSEIAKEQGFSITYLDIEELSANGQYQCLAELSTSPITV 283
Query: 350 FCGTGASIEVAKIEAVYRALDFLQIM 375
G+G S A+ +A + AL +L+I+
Sbjct: 284 CHGSGISCGNAQSDAAHNALQYLKII 309
Score = 80 (33.2 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 184 PVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR---EAALNMLKFLETVPIEI 240
PVYE E + H FT V G G SKK+AK EAA+N+LK ++ +
Sbjct: 50 PVYECERSDVQVHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAV 109
Query: 241 PE 242
P+
Sbjct: 110 PD 111
>UNIPROTKB|J9P4M2 [details] [associations]
symbol:PRKRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 CTD:8575 GeneTree:ENSGT00530000063014
EMBL:AAEX03017812 RefSeq:XP_545545.2 Ensembl:ENSCAFT00000044833
GeneID:488423 KEGG:cfa:488423 Uniprot:J9P4M2
Length = 313
Score = 184 (69.8 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 52/169 (30%), Positives = 77/169 (45%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVP 237
+ G H+R +T + + E G G SKK AKR AA L KF P
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 197
Score = 121 (47.7 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 292 EKL-LSTRNLIDEVE-DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTV 349
EK+ L R+L+ D I L +++ E + ++++DIEE S +Q L +L+T+P+TV
Sbjct: 224 EKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITV 283
Query: 350 FCGTGASIEVAKIEAVYRALDFLQIM 375
G+G S A+ +A + AL +L+I+
Sbjct: 284 CHGSGISCGNAQSDAAHNALQYLKII 309
Score = 90 (36.7 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 35/113 (30%), Positives = 49/113 (43%)
Query: 133 EAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETT 192
+++H AA L++ D K K P+ L E M K PVYE E +
Sbjct: 3 QSRHRAAAPPLER---EDSGTFSLGKMITAKPGKTPIQVLHEYGMKTK-NIPVYECERSD 58
Query: 193 GLPHERMFTVCAYVNVYKEEGMGKSKKIAKR---EAALNMLKFLETVPIEIPE 242
H FT V G G SKK+AK EAA+N+LK ++ +P+
Sbjct: 59 VQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD 111
>UNIPROTKB|F1RZE0 [details] [associations]
symbol:PRKRA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042474 "middle ear morphogenesis" evidence=IEA] [GO:0042473
"outer ear morphogenesis" evidence=IEA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0006468 "protein phosphorylation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0005737 GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20
GO:GO:0006468 GO:GO:0003725 GO:GO:0030422 GO:GO:0048705
GO:GO:0042474 GO:GO:0042473 CTD:8575 GeneTree:ENSGT00530000063014
OMA:PVTVCHG EMBL:CU550661 RefSeq:XP_001927740.1 UniGene:Ssc.6789
Ensembl:ENSSSCT00000017418 GeneID:100155653 KEGG:ssc:100155653
Uniprot:F1RZE0
Length = 313
Score = 184 (69.8 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 52/169 (30%), Positives = 77/169 (45%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVP 237
+ G H+R +T + + E G G SKK AKR AA L KF P
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 197
Score = 121 (47.7 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 292 EKL-LSTRNLIDEVE-DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTV 349
EK+ L R+L+ D I L +++ E + ++++DIEE S +Q L +L+T+P+TV
Sbjct: 224 EKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIEELSANGQYQCLAELSTSPITV 283
Query: 350 FCGTGASIEVAKIEAVYRALDFLQIM 375
G+G S A+ +A + AL +L+I+
Sbjct: 284 CHGSGISCGNAQSDAAHNALQYLKII 309
Score = 90 (36.7 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 35/113 (30%), Positives = 49/113 (43%)
Query: 133 EAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETT 192
+++H AA L++ D K K P+ L E M K PVYE E +
Sbjct: 3 QSRHRAAAPPLER---EDSGTFSLGKMITAKPGKTPIQVLHEYGMKTK-NIPVYECERSD 58
Query: 193 GLPHERMFTVCAYVNVYKEEGMGKSKKIAKR---EAALNMLKFLETVPIEIPE 242
H FT V G G SKK+AK EAA+N+LK ++ +P+
Sbjct: 59 VQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD 111
>MGI|MGI:1344375 [details] [associations]
symbol:Prkra "protein kinase, interferon inducible double
stranded RNA dependent activator" species:10090 "Mus musculus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006468 "protein
phosphorylation" evidence=IDA] [GO:0006917 "induction of apoptosis"
evidence=IDA] [GO:0006950 "response to stress" evidence=IDA]
[GO:0016301 "kinase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=ISO] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0042473 "outer ear
morphogenesis" evidence=IMP] [GO:0042474 "middle ear morphogenesis"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0048705 "skeletal system morphogenesis"
evidence=IMP] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 MGI:MGI:1344375 GO:GO:0005737
GO:GO:0048471 GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20
GO:GO:0006468 GO:GO:0003725 GO:GO:0030422 GO:GO:0048705
GO:GO:0042474 GO:GO:0042473 CTD:8575 eggNOG:NOG245126
GeneTree:ENSGT00530000063014 HOGENOM:HOG000231919 OMA:PVTVCHG
OrthoDB:EOG41RPVB HOVERGEN:HBG001700 EMBL:AF083032 EMBL:AK012798
EMBL:AK155112 EMBL:BC011311 IPI:IPI00471256 RefSeq:NP_036001.1
UniGene:Mm.277250 ProteinModelPortal:Q9WTX2 SMR:Q9WTX2
STRING:Q9WTX2 PhosphoSite:Q9WTX2 PaxDb:Q9WTX2 PRIDE:Q9WTX2
Ensembl:ENSMUST00000002808 GeneID:23992 KEGG:mmu:23992
InParanoid:Q9WTX2 NextBio:303897 Bgee:Q9WTX2 CleanEx:MM_RAX
Genevestigator:Q9WTX2 GermOnline:ENSMUSG00000002731 Uniprot:Q9WTX2
Length = 313
Score = 183 (69.5 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 51/169 (30%), Positives = 77/169 (45%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + ++ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQVHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVP 237
+ G H+R +T + + E G G SKK AKR AA L KF P
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 197
Score = 122 (48.0 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 292 EKL-LSTRNLIDEVE-DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTV 349
EK+ L R+L+ D I L +++ E + ++++DIEE S +Q L +L+T+P+TV
Sbjct: 224 EKINLLKRSLLSLPNTDYIQLLSEIASEQGFNITYLDIEELSANGQYQCLAELSTSPITV 283
Query: 350 FCGTGASIEVAKIEAVYRALDFLQIM 375
G+G S A+ +A + AL +L+I+
Sbjct: 284 CHGSGISCGNAQSDAAHNALQYLKII 309
Score = 84 (34.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/78 (35%), Positives = 37/78 (47%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR---E 224
P+ L E M K PVYE E + H FT V G G SKK+AK E
Sbjct: 35 PIQVLHEYGMKTK-NIPVYECERSDVQVHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAE 93
Query: 225 AALNMLKFLETVPIEIPE 242
AA+N+LK ++ +P+
Sbjct: 94 AAINILKANASICFAVPD 111
>UNIPROTKB|O75569 [details] [associations]
symbol:PRKRA "Interferon-inducible double stranded
RNA-dependent protein kinase activator A" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0042473 "outer ear morphogenesis"
evidence=IEA] [GO:0042474 "middle ear morphogenesis" evidence=IEA]
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042803 "protein
homodimerization activity" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0009615 "response to virus"
evidence=TAS] [GO:0006955 "immune response" evidence=TAS]
[GO:0008047 "enzyme activator activity" evidence=TAS] [GO:0008285
"negative regulation of cell proliferation" evidence=TAS]
[GO:0043085 "positive regulation of catalytic activity"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005737
GO:GO:0048471 GO:GO:0008285 GO:GO:0006955 GO:GO:0006950
GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468 GO:GO:0009615
EMBL:CH471058 GO:GO:0003725 GO:GO:0030422
Pathway_Interaction_DB:ceramidepathway GO:GO:0008047 GO:GO:0048705
GO:GO:0042474 GO:GO:0042473 EMBL:AC009948 CTD:8575 eggNOG:NOG245126
HOGENOM:HOG000231919 OMA:PVTVCHG OrthoDB:EOG41RPVB EMBL:AF072860
EMBL:AF083033 EMBL:AY251164 EMBL:AL136615 EMBL:AL833867
EMBL:BT007243 EMBL:AK290601 EMBL:CR533525 EMBL:AK223107
EMBL:BC009470 IPI:IPI00021167 IPI:IPI00718940 IPI:IPI00719567
RefSeq:NP_001132989.1 RefSeq:NP_001132990.1 RefSeq:NP_003681.1
UniGene:Hs.570274 PDB:2DIX PDBsum:2DIX ProteinModelPortal:O75569
SMR:O75569 IntAct:O75569 MINT:MINT-5003897 STRING:O75569
PhosphoSite:O75569 PaxDb:O75569 PRIDE:O75569 DNASU:8575
Ensembl:ENST00000325748 Ensembl:ENST00000432031
Ensembl:ENST00000487082 GeneID:8575 KEGG:hsa:8575 UCSC:uc002umd.3
UCSC:uc002ume.3 GeneCards:GC02M179260 HGNC:HGNC:9438 HPA:CAB004648
MIM:603424 MIM:612067 neXtProt:NX_O75569 Orphanet:210571
PharmGKB:PA33780 HOVERGEN:HBG001700 InParanoid:O75569
PhylomeDB:O75569 EvolutionaryTrace:O75569 GenomeRNAi:8575
NextBio:32165 ArrayExpress:O75569 Bgee:O75569 CleanEx:HS_PRKRA
CleanEx:HS_RAX Genevestigator:O75569 GermOnline:ENSG00000180228
Uniprot:O75569
Length = 313
Score = 184 (69.8 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 52/169 (30%), Positives = 77/169 (45%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 33 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 88
Query: 136 HNAAKSVLDQLIGRDD------EKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETE 189
H AA++ ++ L + LM K + NP+G LQE + W P Y
Sbjct: 89 HRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLS 148
Query: 190 ETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNML-KFLETVP 237
+ G H+R +T + + E G G SKK AKR AA L KF P
Sbjct: 149 QEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 197
Score = 118 (46.6 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 29/86 (33%), Positives = 53/86 (61%)
Query: 292 EKL-LSTRNLIDEVE-DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTV 349
EK+ L R+L+ D I L +++ E + ++++DI+E S +Q L +L+T+P+TV
Sbjct: 224 EKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITV 283
Query: 350 FCGTGASIEVAKIEAVYRALDFLQIM 375
G+G S A+ +A + AL +L+I+
Sbjct: 284 CHGSGISCGNAQSDAAHNALQYLKII 309
Score = 85 (35.0 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 34/113 (30%), Positives = 48/113 (42%)
Query: 133 EAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETT 192
+++H A L++ D K K P+ L E M K PVYE E +
Sbjct: 3 QSRHRAEAPPLER---EDSGTFSLGKMITAKPGKTPIQVLHEYGMKTK-NIPVYECERSD 58
Query: 193 GLPHERMFTVCAYVNVYKEEGMGKSKKIAKR---EAALNMLKFLETVPIEIPE 242
H FT V G G SKK+AK EAA+N+LK ++ +P+
Sbjct: 59 VQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD 111
>UNIPROTKB|E2RQ94 [details] [associations]
symbol:PRKRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GeneTree:ENSGT00530000063014 OMA:PVTVCHG
EMBL:AAEX03017812 Ensembl:ENSCAFT00000021978 NextBio:20861775
Uniprot:E2RQ94
Length = 351
Score = 218 (81.8 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 98/333 (29%), Positives = 153/333 (45%)
Query: 53 VSTNNLPLEEAARLEVMRLNTGDRT-PVSLMQELLSRRGTAPKYELIQI-EGAINEPIFK 110
+ T N+P+ E R +V +++ T V++ + GT+ K + E AIN I K
Sbjct: 39 MKTKNIPVYECERSDV-QIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAIN--ILK 95
Query: 111 YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKE---NLFKVEPN 167
S+ R + I S SK V L G DD + Q + K + N
Sbjct: 96 ANASIWRMLR-FSCIASSLSKP---FQTVSVVAPPLAG-DDHAISVQPKVQPKQPKNQLN 150
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
P+G LQE + W P Y + G H+R +T + + E G G SKK AKR AA
Sbjct: 151 PIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAE 210
Query: 228 NML-KFLETVPIEIPEKKQGEDVD--EKGE-SNGLKHTHDSTFLTPQILKKIQQYHTVFS 283
L KF P + G V + G+ +N + H+ T+ + L+ S
Sbjct: 211 KFLAKFSNISPENHISLRTGVGVISFKMGKLTNVVGHSLGCTWHS---LRN--------S 259
Query: 284 QKTKGPLLEK-LLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQL 342
K LL++ LLS N D I L +++ E + ++++DIEE S +Q L +L
Sbjct: 260 PGEKINLLKRSLLSIPNT-----DYIQLLSEIAKEQGFNITYLDIEELSANGQYQCLAEL 314
Query: 343 TTTPVTVFCGTGASIEVAKIEAVYRALDFLQIM 375
+T+P+TV G+G S A+ +A + AL +L+I+
Sbjct: 315 STSPITVCHGSGISCGNAQSDAAHNALQYLKII 347
>UNIPROTKB|B4DJC7 [details] [associations]
symbol:PRKRA "cDNA FLJ60590, highly similar to
Interferon-inducible double strandedRNA-dependent protein kinase
activator A" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0016301 "kinase
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0042473 "outer ear morphogenesis"
evidence=IEA] [GO:0042474 "middle ear morphogenesis" evidence=IEA]
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20
GO:GO:0006468 GO:GO:0005622 GO:GO:0016301 GO:GO:0003725
GO:GO:0048705 GO:GO:0042474 GO:GO:0042473 EMBL:AC009948
HOGENOM:HOG000231919 OrthoDB:EOG41RPVB UniGene:Hs.570274
HGNC:HGNC:9438 HOVERGEN:HBG001700 EMBL:AK296019 IPI:IPI01009958
SMR:B4DJC7 STRING:B4DJC7 Ensembl:ENST00000438687 UCSC:uc002umc.3
Uniprot:B4DJC7
Length = 200
Score = 120 (47.3 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 29/76 (38%), Positives = 37/76 (48%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAK 222
K + NP+G LQE + W P Y + G H+R +T + + E G G SKK AK
Sbjct: 9 KNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAK 68
Query: 223 REAALNML-KFLETVP 237
R AA L KF P
Sbjct: 69 RNAAEKFLAKFSNISP 84
Score = 118 (46.6 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 29/86 (33%), Positives = 53/86 (61%)
Query: 292 EKL-LSTRNLIDEVE-DPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTV 349
EK+ L R+L+ D I L +++ E + ++++DI+E S +Q L +L+T+P+TV
Sbjct: 111 EKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITV 170
Query: 350 FCGTGASIEVAKIEAVYRALDFLQIM 375
G+G S A+ +A + AL +L+I+
Sbjct: 171 CHGSGISCGNAQSDAAHNALQYLKII 196
Score = 83 (34.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 24/67 (35%), Positives = 32/67 (47%)
Query: 78 PVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
P+ +QEL G P+Y L Q EG P K + ++ G G SKK+AK
Sbjct: 14 PIGSLQELAIHHGWRLPEYTLSQ-EGG---PAHKREYTTICRLESFMETGKGASKKQAKR 69
Query: 137 NAAKSVL 143
NAA+ L
Sbjct: 70 NAAEKFL 76
>UNIPROTKB|F8VZ57 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC023509 HGNC:HGNC:11569
IPI:IPI01022047 Ensembl:ENST00000550407 ArrayExpress:F8VZ57
Uniprot:F8VZ57
Length = 227
Score = 130 (50.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
P+SL+QE +R G P Y+L++ EG ++P F +R+++ S G G SKK AKH
Sbjct: 2 PISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQGPSKKAAKHK 57
Query: 138 AAKSVLDQLIG 148
AA+ L L G
Sbjct: 58 AAEVALKHLKG 68
Score = 87 (35.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
E NPVG LQE + + W P Y + +G H + FT+ V + E G G
Sbjct: 128 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGCG 178
>ZFIN|ZDB-GENE-030131-6372 [details] [associations]
symbol:stau1 "staufen, RNA binding protein,
homolog 1 (Drosophila)" species:7955 "Danio rerio" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IPI] [GO:0007281 "germ cell development"
evidence=IMP] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 ZFIN:ZDB-GENE-030131-6372
Gene3D:3.30.160.20 GO:GO:0003723 GO:GO:0005622 GO:GO:0007281
GO:GO:0003725 GeneTree:ENSGT00530000063014 EMBL:BX546446
IPI:IPI00487602 Ensembl:ENSDART00000133992 ArrayExpress:F1Q5V4
Bgee:F1Q5V4 Uniprot:F1Q5V4
Length = 690
Score = 176 (67.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 67/217 (30%), Positives = 101/217 (46%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+++ GA + F R+ + E + G GKSKK A
Sbjct: 271 NKSEISQVFEIALKRNMPVDFEVLKEAGAPHMKSFVVRV-VVGE---FAGEGEGKSKKIA 326
Query: 135 KHNAAKSVLD------QLIGRDDEKLMCQKEN--LFKVE--P------NPVGQLQEACMT 178
K AA +VL+ QL D L +K++ + K++ P NP+ +L +
Sbjct: 327 KKQAAIAVLEELRRLPQLPATDKIPLRIKKKSKSIIKLQTSPEYGQGMNPISRLAQIQQA 386
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVP 237
+K P Y GLP R F + V EGMG SKK+AKR AA ML+ L VP
Sbjct: 387 KKEKEPEYTLVTERGLPRRREFVMQVSVAGQNAEGMGPSKKVAKRNAAEKMLELLGFKVP 446
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDSTFLTPQILKK 274
P K + DEK + L TF P ++K
Sbjct: 447 QPQPPKPALK-TDEKPPAKKLGDGRKVTFFEPGSMEK 482
Score = 148 (57.2 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 43/125 (34%), Positives = 67/125 (53%)
Query: 126 GSGKSKKEAKHNAA---------KSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEAC 176
G G++++ AKH+AA + +L Q+ DE +ENL K E + Q+ E
Sbjct: 229 GKGRTRQAAKHDAAAKAIKYLQKEPILQQITEMTDEPA---QENLNKSE---ISQVFEIA 282
Query: 177 MTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETV 236
+ R P +E + G PH + F V V + EG GKSKKIAK++AA+ +L+ L +
Sbjct: 283 LKRNMPVD-FEVLKEAGAPHMKSFVVRVVVGEFAGEGEGKSKKIAKKQAAIAVLEELRRL 341
Query: 237 PIEIP 241
P ++P
Sbjct: 342 P-QLP 345
Score = 99 (39.9 bits), Expect = 9.4e-05, Sum P(3) = 9.4e-05
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
N ++TP+ L+ EL P+Y+L+ EG + IF R++L + + A G S
Sbjct: 69 NPKEKTPMCLVNELARYNKIQPEYKLLSEEGPAHSKIFSVRLTLGDQH--WDA--EGTSI 124
Query: 132 KEAKHNAAKSVLDQ 145
K+A+H+AA S L Q
Sbjct: 125 KKAQHSAASSALAQ 138
Score = 58 (25.5 bits), Expect = 9.4e-05, Sum P(3) = 9.4e-05
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 213 GMGKSKKIAKREAALNMLKFLETVPIEIPEKKQGEDVDEKGESN 256
G G++++ AK +AA +K+L+ PI ++ E DE + N
Sbjct: 229 GKGRTRQAAKHDAAAKAIKYLQKEPIL---QQITEMTDEPAQEN 269
Score = 54 (24.1 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 289 PLLEKLLSTRN-LIDEVEDPIL----YLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLT 343
P E +L T N L + P+ L L++ +V + D + +K + F SL+ +
Sbjct: 557 PTAEGILKTNNSLAHRPQGPLTRPSEQLSYLANVQGLQVEYKDFPKNNKNE-FVSLINCS 615
Query: 344 TTPVTVFCGTGASIEVAKIEAVYRALDFLQIMN 376
+ P + G G +E A AL+ L++++
Sbjct: 616 SQPPLISHGIGKDVESCHDMA---ALNILKLLS 645
>UNIPROTKB|Q5JW30 [details] [associations]
symbol:STAU1 "Double-stranded RNA-binding protein Staufen
homolog 1" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AL133174 UniGene:Hs.596704
HGNC:HGNC:11370 HOGENOM:HOG000231025 HOVERGEN:HBG005013
ChiTaRS:STAU1 IPI:IPI00641873 SMR:Q5JW30 STRING:Q5JW30
Ensembl:ENST00000371792 Uniprot:Q5JW30
Length = 494
Score = 173 (66.0 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 68/227 (29%), Positives = 104/227 (45%)
Query: 57 NLPLEEAARLEVMRLNTGD----RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYR 112
N PL E RLEV + + ++ +S + E+ +R +E+ + G + F +
Sbjct: 81 NEPLPE--RLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTK 138
Query: 113 ISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKV 164
+S+ +V G GKSKK +K NAA +VL++L + R ++ + + + K
Sbjct: 139 VSVGE----FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKT 194
Query: 165 EP------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
P NP+ +L + +K P Y GLP R F + V + EG G +K
Sbjct: 195 SPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNK 254
Query: 219 KIAKREAALNMLKFLE-TVPIEIPEK---KQGEDVDEKGESNGLKHT 261
K+AKR AA NML+ L VP P K K E K +G K T
Sbjct: 255 KVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIKKPGDGRKVT 301
Score = 139 (54.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 44/137 (32%), Positives = 70/137 (51%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMC-----QKEN 160
P Y++ L+ + + G GK+++ AKH+AA L L E+L ++EN
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEEN 99
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
L K E + Q+ E + R P +E +G PH + F V + EG GKSKKI
Sbjct: 100 LNKSE---ISQVFEIALKRNLPVN-FEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKI 155
Query: 221 AKREAALNMLKFLETVP 237
+K+ AA+ +L+ L+ +P
Sbjct: 156 SKKNAAIAVLEELKKLP 172
Score = 52 (23.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 307 PILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVY 366
P L+ LS ++V + D + +K + F SL+ ++ P + G G +E A
Sbjct: 406 PSEQLDYLSRVQGFQVEYKDFPKNNKNE-FVSLINCSSQPPLISHGIGKDVESCHDMA-- 462
Query: 367 RALDFLQIMN 376
AL+ L++++
Sbjct: 463 -ALNILKLLS 471
>MGI|MGI:1338864 [details] [associations]
symbol:Stau1 "staufen (RNA binding protein) homolog 1
(Drosophila)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0008157 "protein phosphatase 1
binding" evidence=ISO] [GO:0008298 "intracellular mRNA
localization" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] [GO:0043005 "neuron projection" evidence=ISO]
[GO:0043025 "neuronal cell body" evidence=ISO] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
MGI:MGI:1338864 GO:GO:0005791 Gene3D:3.30.160.20 GO:GO:0003723
GO:GO:0003725 GO:GO:0008298 GO:GO:0010494
GeneTree:ENSGT00530000063014 CTD:6780 eggNOG:NOG299502
HOGENOM:HOG000231025 HOVERGEN:HBG005013 ChiTaRS:STAU1 EMBL:AF061942
IPI:IPI00323319 RefSeq:NP_001103375.1 RefSeq:NP_001103376.1
RefSeq:NP_035620.1 UniGene:Mm.73276 ProteinModelPortal:Q9Z108
SMR:Q9Z108 STRING:Q9Z108 PhosphoSite:Q9Z108 PaxDb:Q9Z108
PRIDE:Q9Z108 Ensembl:ENSMUST00000109236 GeneID:20853 KEGG:mmu:20853
NextBio:299647 Bgee:Q9Z108 Genevestigator:Q9Z108
GermOnline:ENSMUSG00000039536 Uniprot:Q9Z108
Length = 487
Score = 180 (68.4 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 72/249 (28%), Positives = 114/249 (45%)
Query: 32 VEENSPSRVLFDNNEIKQIP-KVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRG 90
V+ ++P+R L + + +P ++ N EE LN ++ +S + E+ +R
Sbjct: 60 VKHDAPARAL-RTLQSEPLPERLEVNGREAEEE------NLN---KSEISQVFEIALKRN 109
Query: 91 TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL---- 146
+E+ + G + F R+S+ +V G GKSKK +K NAA++VL+QL
Sbjct: 110 LPVNFEVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKISKKNAARAVLEQLRRLP 165
Query: 147 ----IGRDDEKLMCQKENLFKVEP------NPVGQLQEACMTRKWPPPVYETEETTGLPH 196
+ R ++ + + K P NP+ +L + +K P Y GLP
Sbjct: 166 PLPAVERVKPRIKKKSQPTCKTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPR 225
Query: 197 ERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVPIEIPEK---KQGEDVDEK 252
R F + V + EG+G +KK+AKR AA NML+ L VP P K K E K
Sbjct: 226 RREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILGFKVPQAQPAKPALKSEEKTPVK 285
Query: 253 GESNGLKHT 261
+G K T
Sbjct: 286 KPGDGRKVT 294
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 42/137 (30%), Positives = 64/137 (46%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLM-----CQKEN 160
P Y++ L+ + + G GK + KH+A L L E+L ++EN
Sbjct: 35 PPLLYQVELSVGGQQFN--GKGKMRPPVKHDAPARALRTLQSEPLPERLEVNGREAEEEN 92
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
L K E + Q+ E + R P +E +G PH + F V + EG GKSKKI
Sbjct: 93 LNKSE---ISQVFEIALKRNLPVN-FEVARESGPPHMKNFVTRVSVGEFVGEGEGKSKKI 148
Query: 221 AKREAALNMLKFLETVP 237
+K+ AA +L+ L +P
Sbjct: 149 SKKNAARAVLEQLRRLP 165
>UNIPROTKB|H3BV98 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC023509 HGNC:HGNC:11569
Ensembl:ENST00000552817 Bgee:H3BV98 Uniprot:H3BV98
Length = 161
Score = 153 (58.9 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 34/87 (39%), Positives = 48/87 (55%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 58 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 117
Query: 225 AALNMLKFLETVPIEIPEKKQGEDVDE 251
AA ML + TVP++ + + E D+
Sbjct: 118 AAAKMLLRVHTVPLDARDGNEVEPDDD 144
>UNIPROTKB|I3L9H8 [details] [associations]
symbol:STAU1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0030529
GO:GO:0003725 GO:GO:0008298 GeneTree:ENSGT00530000063014
EMBL:CU407277 Ensembl:ENSSSCT00000022958 OMA:TSTSAAX Uniprot:I3L9H8
Length = 407
Score = 162 (62.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 12 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 67
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 68 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQSTQEYGQGMNPISRLAQIQQA 127
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVP 237
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L VP
Sbjct: 128 KKEKEPEYLLLTERGLPRRREFVMQVKVGNHTAEGSGTNKKVAKRNAAENMLEILGFKVP 187
Query: 238 IEIPEK---KQGEDVDEKGESNGLKHT 261
P K K E K +G K T
Sbjct: 188 QAQPTKPALKSEEKTPIKKPGDGRKVT 214
Score = 52 (23.4 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 307 PILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVY 366
P L+ LS ++V + D + +K + F SL+ ++ P + G G +E A
Sbjct: 319 PSEQLDYLSRVQGFQVEYKDFPKNNKNE-FVSLINCSSQPPLISHGIGKDVESCHDMA-- 375
Query: 367 RALDFLQIMN 376
AL+ L++++
Sbjct: 376 -ALNILKLLS 384
>UNIPROTKB|F1Q1C5 [details] [associations]
symbol:STAU1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0030529 GO:GO:0003725
GO:GO:0008298 GeneTree:ENSGT00530000063014 EMBL:AAEX03013991
Ensembl:ENSCAFT00000018030 Uniprot:F1Q1C5
Length = 591
Score = 165 (63.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 56/214 (26%), Positives = 101/214 (47%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 196 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTKVSVGE----FVGEGEGKSKKIS 251
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 252 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQSSTDCGQGMNPISRLAQIQQA 311
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 312 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILG---F 368
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K T D TF P
Sbjct: 369 KVPQAQPTKPALKSEEKTPIKKTGDGRKVTFFEP 402
Score = 136 (52.9 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 42/137 (30%), Positives = 68/137 (49%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLM------CQKEN 160
P Y++ L+ + + G GK+++ AKH+AA L L + ++EN
Sbjct: 137 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRTLQSEPPPERPEVNGRESEEEN 194
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
L K E + Q+ E + R P +E +G PH + F V + EG GKSKKI
Sbjct: 195 LNKSE---ISQVFEIALKRNLPVN-FEVARESGPPHMKSFVTKVSVGEFVGEGEGKSKKI 250
Query: 221 AKREAALNMLKFLETVP 237
+K+ AA+ +L+ L+ +P
Sbjct: 251 SKKNAAIAVLEELKKLP 267
Score = 52 (23.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 307 PILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVY 366
P L+ LS ++V + D + +K + F SL+ ++ P + G G +E A
Sbjct: 503 PSEQLDYLSRVQGFQVEYKDFPKNNKNE-FVSLINCSSQPPLISHGIGKDVESCHDMA-- 559
Query: 367 RALDFLQIMN 376
AL+ L++++
Sbjct: 560 -ALNILKLLS 568
>UNIPROTKB|J9P393 [details] [associations]
symbol:STAU1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GeneTree:ENSGT00530000063014 OMA:MKPRIKK
EMBL:AAEX03013991 Ensembl:ENSCAFT00000046309 Uniprot:J9P393
Length = 678
Score = 165 (63.1 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 56/214 (26%), Positives = 101/214 (47%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ +V G GKSKK +
Sbjct: 283 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTKVSVGE----FVGEGEGKSKKIS 338
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVEP--------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ NP+ +L +
Sbjct: 339 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQSSTDCGQGMNPISRLAQIQQA 398
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPI 238
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L
Sbjct: 399 KKEKEPEYMLLTERGLPRRREFVMQVKVGNHTAEGAGTNKKVAKRNAAENMLEILG---F 455
Query: 239 EIPEKKQGEDVDEKGESNGLKHTHDS---TFLTP 269
++P+ + + + E +K T D TF P
Sbjct: 456 KVPQAQPTKPALKSEEKTPIKKTGDGRKVTFFEP 489
Score = 130 (50.8 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 43/144 (29%), Positives = 69/144 (47%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-------------IGRDDEK 153
P Y++ L+ + + G GK+++ AKH+AA L L +G
Sbjct: 217 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRTLQSEPPPERPEGRRLGEQVNG 274
Query: 154 LMCQKENLFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEG 213
++ENL K E + Q+ E + R P +E +G PH + F V + EG
Sbjct: 275 RESEEENLNKSE---ISQVFEIALKRNLPVN-FEVARESGPPHMKSFVTKVSVGEFVGEG 330
Query: 214 MGKSKKIAKREAALNMLKFLETVP 237
GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 331 EGKSKKISKKNAAIAVLEELKKLP 354
Score = 52 (23.4 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 307 PILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVY 366
P L+ LS ++V + D + +K + F SL+ ++ P + G G +E A
Sbjct: 590 PSEQLDYLSRVQGFQVEYKDFPKNNKNE-FVSLINCSSQPPLISHGIGKDVESCHDMA-- 646
Query: 367 RALDFLQIMN 376
AL+ L++++
Sbjct: 647 -ALNILKLLS 655
>UNIPROTKB|O95793 [details] [associations]
symbol:STAU1 "Double-stranded RNA-binding protein Staufen
homolog 1" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0005791 "rough endoplasmic
reticulum" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
EMBL:CH471077 GO:GO:0005875 GO:GO:0005791 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008298 GO:GO:0010494 EMBL:AF061939
EMBL:AF061941 EMBL:AF061938 EMBL:AF061940 EMBL:AJ132258
EMBL:AY529074 EMBL:AY546099 EMBL:AL136601 EMBL:AK292859
EMBL:AL133174 EMBL:BC050432 EMBL:BC095397 IPI:IPI00000001
IPI:IPI00218609 IPI:IPI00643664 RefSeq:NP_001032405.1
RefSeq:NP_004593.2 RefSeq:NP_059346.2 RefSeq:NP_059347.2
RefSeq:NP_059348.2 UniGene:Hs.596704 ProteinModelPortal:O95793
SMR:O95793 IntAct:O95793 MINT:MINT-1160018 STRING:O95793
PhosphoSite:O95793 PaxDb:O95793 PRIDE:O95793 DNASU:6780
Ensembl:ENST00000340954 Ensembl:ENST00000347458
Ensembl:ENST00000360426 Ensembl:ENST00000371802
Ensembl:ENST00000371805 Ensembl:ENST00000371828
Ensembl:ENST00000371856 GeneID:6780 KEGG:hsa:6780 UCSC:uc002xua.3
CTD:6780 GeneCards:GC20M047729 HGNC:HGNC:11370 HPA:CAB020839
MIM:601716 neXtProt:NX_O95793 PharmGKB:PA36188 eggNOG:NOG299502
HOGENOM:HOG000231025 HOVERGEN:HBG005013 InParanoid:O95793
OMA:MKPRIKK OrthoDB:EOG418BN9 PhylomeDB:O95793 ChiTaRS:STAU1
GenomeRNAi:6780 NextBio:26468 ArrayExpress:O95793 Bgee:O95793
CleanEx:HS_STAU1 Genevestigator:O95793 GermOnline:ENSG00000124214
Uniprot:O95793
Length = 577
Score = 162 (62.1 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 68/229 (29%), Positives = 105/229 (45%)
Query: 57 NLPLEEAARLEVMRLNTGD----RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYR 112
N PL E RLEV + + ++ +S + E+ +R +E+ + G + F +
Sbjct: 162 NEPLPE--RLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTK 219
Query: 113 ISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL--------IGRDDEKLMCQKENLFKV 164
+S+ +V G GKSKK +K NAA +VL++L + R ++ + + + K
Sbjct: 220 VSVGE----FVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKP 275
Query: 165 E--P------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGK 216
+ P NP+ +L + +K P Y GLP R F + V + EG G
Sbjct: 276 QTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGT 335
Query: 217 SKKIAKREAALNMLKFLE-TVPIEIPEK---KQGEDVDEKGESNGLKHT 261
+KK+AKR AA NML+ L VP P K K E K +G K T
Sbjct: 336 NKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIKKPGDGRKVT 384
Score = 139 (54.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 44/137 (32%), Positives = 70/137 (51%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMC-----QKEN 160
P Y++ L+ + + G GK+++ AKH+AA L L E+L ++EN
Sbjct: 123 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEEN 180
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
L K E + Q+ E + R P +E +G PH + F V + EG GKSKKI
Sbjct: 181 LNKSE---ISQVFEIALKRNLPVN-FEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKI 236
Query: 221 AKREAALNMLKFLETVP 237
+K+ AA+ +L+ L+ +P
Sbjct: 237 SKKNAAIAVLEELKKLP 253
Score = 52 (23.4 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 307 PILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVY 366
P L+ LS ++V + D + +K + F SL+ ++ P + G G +E A
Sbjct: 489 PSEQLDYLSRVQGFQVEYKDFPKNNKNE-FVSLINCSSQPPLISHGIGKDVESCHDMA-- 545
Query: 367 RALDFLQIMN 376
AL+ L++++
Sbjct: 546 -ALNILKLLS 554
>UNIPROTKB|F1NHE0 [details] [associations]
symbol:STAU1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
GeneTree:ENSGT00530000063014 EMBL:AADN02019284 IPI:IPI00821077
Ensembl:ENSGALT00000007541 ArrayExpress:F1NHE0 Uniprot:F1NHE0
Length = 694
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 59/207 (28%), Positives = 100/207 (48%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F ++S+ ++ G GKSKK +
Sbjct: 276 NKSEISQVFEIALKRNLPVNFEVTKESGPPHMKSFVTKVSVGE----FMGEGEGKSKKIS 331
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVE--P------NPVGQLQEACMT 178
K NAA +VL++L + + ++ + +++ K++ P NP+ +L +
Sbjct: 332 KKNAAIAVLEELKKLPPLPTVEKMKPRIKKKTKSIVKLQTSPEYGQGMNPISRLAQIQQA 391
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVP 237
+K P Y GLP R F + V V+ EGMG +KK+AKR AA NML+ L +P
Sbjct: 392 KKEKEPEYMLITERGLPRRREFVMQVKVGVHTAEGMGTNKKVAKRNAAENMLEILGFKIP 451
Query: 238 IEIPEK---KQGEDVDEKGESNGLKHT 261
P K K E K +G K T
Sbjct: 452 QPQPPKPALKTEEKTPVKKPGDGRKVT 478
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 44/137 (32%), Positives = 69/137 (50%)
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQ-----KENLFKVEPNPVGQLQEACMTR 179
G G++++ AKH+AA L L EK ENL K E + Q+ E + R
Sbjct: 234 GKGRTRQAAKHDAAAKALKVLQNEPLPEKPEVNGKEPDDENLNKSE---ISQVFEIALKR 290
Query: 180 KWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE 239
P +E + +G PH + F V + EG GKSKKI+K+ AA+ +L+ L+ +P
Sbjct: 291 NLPVN-FEVTKESGPPHMKSFVTKVSVGEFMGEGEGKSKKISKKNAAIAVLEELKKLP-P 348
Query: 240 IPE-KKQGEDVDEKGES 255
+P +K + +K +S
Sbjct: 349 LPTVEKMKPRIKKKTKS 365
>UNIPROTKB|F1MH34 [details] [associations]
symbol:F1MH34 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008298 "intracellular mRNA localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0030529 GO:GO:0003725 GO:GO:0008298
GeneTree:ENSGT00530000063014 OMA:MKPRIKK EMBL:DAAA02036827
IPI:IPI00708163 Ensembl:ENSBTAT00000000301 Uniprot:F1MH34
Length = 699
Score = 164 (62.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 60/207 (28%), Positives = 98/207 (47%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R +E+ + G + F R+S+ +V G GKSKK +
Sbjct: 280 NKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVGE----FVGEGEGKSKKIS 335
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKVE--P------NPVGQLQEACMT 178
K NAA +VL++L + R ++ + +++ +++ P NP+ +L +
Sbjct: 336 KKNAAIAVLEELKKLPPLPTVERVKPRIKKKTKSIVRLQGGPECGQGMNPISRLAQIQQA 395
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVP 237
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L VP
Sbjct: 396 KKEKEPEYLLLAERGLPRRREFVMQVKVGNHTAEGSGTNKKVAKRNAAENMLEILGFKVP 455
Query: 238 IEIPEK---KQGEDVDEKGESNGLKHT 261
P K K E K +G K T
Sbjct: 456 QAQPSKPALKSEEKTPIKKPGDGRKVT 482
Score = 141 (54.7 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 44/137 (32%), Positives = 70/137 (51%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMC-----QKEN 160
P Y++ L+ + + G GK+++ AKH+AA L L E+L ++EN
Sbjct: 221 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQSEPPSERLEVNGRESEEEN 278
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
L K E + Q+ E + R P +E +G PH + F V + EG GKSKKI
Sbjct: 279 LNKSE---ISQVFEIALKRNLPVN-FEVARESGPPHMKSFVTRVSVGEFVGEGEGKSKKI 334
Query: 221 AKREAALNMLKFLETVP 237
+K+ AA+ +L+ L+ +P
Sbjct: 335 SKKNAAIAVLEELKKLP 351
Score = 48 (22.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 320 YRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRALDFLQIMN 376
++V + D + +K + F SL+ ++ P + G G +E A AL+ L++++
Sbjct: 600 FQVEYKDFPKNNKNE-FVSLINCSSQPPLISHGIGKDVESCHDMA---ALNILKLLS 652
>UNIPROTKB|F8VP94 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC023509 HGNC:HGNC:11569
IPI:IPI01020890 ProteinModelPortal:F8VP94 SMR:F8VP94
Ensembl:ENST00000550147 ArrayExpress:F8VP94 Bgee:F8VP94
Uniprot:F8VP94
Length = 113
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 67 EVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIG 126
+++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 21 QMLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTG 75
Query: 127 SGKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 76 QGPSKKAAKHKAAEVALKHLKG 97
>UNIPROTKB|F8VYK3 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0005634 Gene3D:3.30.160.20 GO:GO:0003725
EMBL:AC023509 HGNC:HGNC:11569 IPI:IPI01021637
ProteinModelPortal:F8VYK3 SMR:F8VYK3 Ensembl:ENST00000549572
ArrayExpress:F8VYK3 Bgee:F8VYK3 Uniprot:F8VYK3
Length = 187
Score = 140 (54.3 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 1 MLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQ 55
Query: 128 GKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 56 GPSKKAAKHKAAEVALKHLKG 76
>UNIPROTKB|F8VYK6 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC023509 HGNC:HGNC:11569
IPI:IPI01021485 ProteinModelPortal:F8VYK6 SMR:F8VYK6
Ensembl:ENST00000549679 ArrayExpress:F8VYK6 Bgee:F8VYK6
Uniprot:F8VYK6
Length = 88
Score = 140 (54.3 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 1 MLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQ 55
Query: 128 GKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 56 GPSKKAAKHKAAEVALKHLKG 76
>UNIPROTKB|F8VZZ7 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC023509 HGNC:HGNC:11569
IPI:IPI01021911 ProteinModelPortal:F8VZZ7 SMR:F8VZZ7
Ensembl:ENST00000551741 ArrayExpress:F8VZZ7 Bgee:F8VZZ7
Uniprot:F8VZZ7
Length = 92
Score = 140 (54.3 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 68 VMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGS 127
++ N G +TP+SL+QE +R G P Y+L++ EG ++P F +R+++ S G
Sbjct: 1 MLAANPG-KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQ 55
Query: 128 GKSKKEAKHNAAKSVLDQLIG 148
G SKK AKH AA+ L L G
Sbjct: 56 GPSKKAAKHKAAEVALKHLKG 76
>UNIPROTKB|F1LMA8 [details] [associations]
symbol:Stau1 "Protein Stau1" species:10116 "Rattus
norvegicus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 RGD:621778 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 IPI:IPI00781178 Ensembl:ENSRNOT00000055131
ArrayExpress:F1LMA8 Uniprot:F1LMA8
Length = 436
Score = 161 (61.7 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 59/187 (31%), Positives = 85/187 (45%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-------- 146
+ L Q+ P K ++ S +V G GKSKK +K NAA++VL+QL
Sbjct: 117 FPLTQVARESGPPHMKNFVTRVSVGE-FVGEGEGKSKKISKKNAARAVLEQLRRLPPLPA 175
Query: 147 IGRDDEKLMCQKENLFKVE--P------NPVGQLQEACMTRKWPPPVYETEETTGLPHER 198
+ R ++ + + K++ P NP+ +L + +K P Y GLP R
Sbjct: 176 VERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRR 235
Query: 199 MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVPIEIPEK---KQGEDVDEKGE 254
F + V + EG G +KK+AKR AA NML+ L VP P K K E K
Sbjct: 236 EFVMQVKVGHHTAEGAGTNKKVAKRNAAENMLEILGFKVPQAQPAKPALKSEEKTPVKKP 295
Query: 255 SNGLKHT 261
+G K T
Sbjct: 296 GDGRKVT 302
Score = 117 (46.2 bits), Expect = 0.00053, P = 0.00053
Identities = 42/142 (29%), Positives = 65/142 (45%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMC-----QKEN 160
P Y++ L+ + + G GK + KH+A L L E+L ++EN
Sbjct: 35 PPLLYQVELSVGGQQFN--GKGKMRPPVKHDATARALRTLQSEPLPERLEVNGRESEEEN 92
Query: 161 LFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
L K E + Q+ E + R P P+ + +G PH + F V + EG G
Sbjct: 93 LNKSE---ISQVFEIALKRNLPVNFESFPLTQVARESGPPHMKNFVTRVSVGEFVGEGEG 149
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA +L+ L +P
Sbjct: 150 KSKKISKKNAARAVLEQLRRLP 171
>UNIPROTKB|Q9ET50 [details] [associations]
symbol:Stau1 "Staufen isoform Stau+I6" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008298
"intracellular mRNA localization" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
RGD:621778 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0030529
GO:GO:0003725 GO:GO:0008298 GeneTree:ENSGT00530000063014 CTD:6780
HOVERGEN:HBG005013 HSSP:P25159 EMBL:AF227200 IPI:IPI00324442
RefSeq:NP_445888.1 UniGene:Rn.9028 SMR:Q9ET50 STRING:Q9ET50
Ensembl:ENSRNOT00000010633 GeneID:84496 KEGG:rno:84496
InParanoid:Q9ET50 NextBio:617071 Genevestigator:Q9ET50
Uniprot:Q9ET50
Length = 495
Score = 161 (61.7 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 59/187 (31%), Positives = 85/187 (45%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-------- 146
+ L Q+ P K ++ S +V G GKSKK +K NAA++VL+QL
Sbjct: 117 FPLTQVARESGPPHMKNFVTRVSVGE-FVGEGEGKSKKISKKNAARAVLEQLRRLPPLPA 175
Query: 147 IGRDDEKLMCQKENLFKVE--P------NPVGQLQEACMTRKWPPPVYETEETTGLPHER 198
+ R ++ + + K++ P NP+ +L + +K P Y GLP R
Sbjct: 176 VERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRR 235
Query: 199 MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVPIEIPEK---KQGEDVDEKGE 254
F + V + EG G +KK+AKR AA NML+ L VP P K K E K
Sbjct: 236 EFVMQVKVGHHTAEGAGTNKKVAKRNAAENMLEILGFKVPQAQPAKPALKSEEKTPVKKP 295
Query: 255 SNGLKHT 261
+G K T
Sbjct: 296 GDGRKVT 302
Score = 117 (46.2 bits), Expect = 0.00065, P = 0.00065
Identities = 42/142 (29%), Positives = 65/142 (45%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMC-----QKEN 160
P Y++ L+ + + G GK + KH+A L L E+L ++EN
Sbjct: 35 PPLLYQVELSVGGQQFN--GKGKMRPPVKHDATARALRTLQSEPLPERLEVNGRESEEEN 92
Query: 161 LFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
L K E + Q+ E + R P P+ + +G PH + F V + EG G
Sbjct: 93 LNKSE---ISQVFEIALKRNLPVNFESFPLTQVARESGPPHMKNFVTRVSVGEFVGEGEG 149
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA +L+ L +P
Sbjct: 150 KSKKISKKNAARAVLEQLRRLP 171
>UNIPROTKB|F1NCF1 [details] [associations]
symbol:STAU2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
GeneTree:ENSGT00530000063014 OMA:LSPVQMT EMBL:AADN02024645
EMBL:AADN02024646 EMBL:AADN02024647 EMBL:AADN02024648
IPI:IPI00582902 Ensembl:ENSGALT00000025223 Uniprot:F1NCF1
Length = 583
Score = 160 (61.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 62/241 (25%), Positives = 106/241 (43%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LP A E +++ +S++ E+ +R +E+I+ G + F R+++
Sbjct: 223 LPQNGEAGKETEEDKDANKSEISVVFEIALKRNIPVSFEVIKESGPPHMKSFVTRVTVGE 282
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP--- 166
+ A G G SKK +K AA SVL +L + KL +K + + K P
Sbjct: 283 ----FTAEGEGNSKKLSKKRAAMSVLQELKKLPPLPVIEKPKLYFKKRPKTILKTGPEYG 338
Query: 167 ---NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
NP+ +L + +K P Y G+P R F + + G G +KKIAKR
Sbjct: 339 QGMNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKIGNEITTGTGPNKKIAKR 398
Query: 224 EAA---LNMLKFLETVPIEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKI 275
AA L L + + P++ +K GE+ G++ G ST L+P + +++
Sbjct: 399 NAAEAMLLQLGYKASTPLQDQTEKLGENKSWNGQNVGFPEPTSSTPKGILHLSPDVYQEM 458
Query: 276 Q 276
+
Sbjct: 459 E 459
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 63/249 (25%), Positives = 108/249 (43%)
Query: 31 KVEENSPSRVLFDNNEIKQIPKVSTNNLPLEEAARLEVMRLN--TGDRTPVSLMQELLSR 88
K + + S+ L + K P+ NN+ + + LN R ++ + L +
Sbjct: 95 KAQHAAASKALNETTLPKPTPRPPKNNINNNPGSITPTVELNGLAMKRGEPAIYRPLDPK 154
Query: 89 RGTAPKYEL-IQIEGAINE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSV 142
P Y G N+ P+ K + + LT + + G GK+++ A+HNAA
Sbjct: 155 --PIPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNSEF--FGEGKTRQAARHNAAMKA 210
Query: 143 LDQLIGRD-DEKLM----CQKENLFKVEPNP--VGQLQEACMTRKWPPPVYETEETTGLP 195
L L EKL KE + N + + E + R P +E + +G P
Sbjct: 211 LQALQNEPIPEKLPQNGEAGKETEEDKDANKSEISVVFEIALKRNIPVS-FEVIKESGPP 269
Query: 196 HERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP----IEIPE---KKQGED 248
H + F V + EG G SKK++K+ AA+++L+ L+ +P IE P+ KK+ +
Sbjct: 270 HMKSFVTRVTVGEFTAEGEGNSKKLSKKRAAMSVLQELKKLPPLPVIEKPKLYFKKRPKT 329
Query: 249 VDEKGESNG 257
+ + G G
Sbjct: 330 ILKTGPEYG 338
>UNIPROTKB|F1NHD1 [details] [associations]
symbol:STAU1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0030529 GO:GO:0003725 GO:GO:0008298
GeneTree:ENSGT00530000063014 OMA:MKPRIKK EMBL:AADN02019284
IPI:IPI00575740 Ensembl:ENSGALT00000007543 ArrayExpress:F1NHD1
Uniprot:F1NHD1
Length = 712
Score = 161 (61.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 57/187 (30%), Positives = 88/187 (47%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQL-------- 146
+ L Q+ P K ++ S ++ G GKSKK +K NAA +VL++L
Sbjct: 295 FPLKQVTKESGPPHMKSFVTKVSVGE-FMGEGEGKSKKISKKNAAIAVLEELKKLPPLPT 353
Query: 147 IGRDDEKLMCQKENLFKVE--P------NPVGQLQEACMTRKWPPPVYETEETTGLPHER 198
+ + ++ + +++ K++ P NP+ +L + +K P Y GLP R
Sbjct: 354 VEKMKPRIKKKTKSIVKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYMLITERGLPRRR 413
Query: 199 MFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVPIEIPEK---KQGEDVDEKGE 254
F + V V+ EGMG +KK+AKR AA NML+ L +P P K K E K
Sbjct: 414 EFVMQVKVGVHTAEGMGTNKKVAKRNAAENMLEILGFKIPQPQPPKPALKTEEKTPVKKP 473
Query: 255 SNGLKHT 261
+G K T
Sbjct: 474 GDGRKVT 480
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 44/142 (30%), Positives = 70/142 (49%)
Query: 126 GSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQ-----KENLFKVEPNPVGQLQEACMTR 179
G G++++ AKH+AA L L EK ENL K E + Q+ E + R
Sbjct: 230 GKGRTRQAAKHDAAAKALKVLQNEPLPEKPEVNGKEPDDENLNKSE---ISQVFEIALKR 286
Query: 180 KWPP-----PVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE 234
P P+ + + +G PH + F V + EG GKSKKI+K+ AA+ +L+ L+
Sbjct: 287 NLPVNFEFFPLKQVTKESGPPHMKSFVTKVSVGEFMGEGEGKSKKISKKNAAIAVLEELK 346
Query: 235 TVPIEIPE-KKQGEDVDEKGES 255
+P +P +K + +K +S
Sbjct: 347 KLP-PLPTVEKMKPRIKKKTKS 367
>UNIPROTKB|Q6JPI2 [details] [associations]
symbol:Stau "Staufen" species:8355 "Xenopus laevis"
[GO:0005938 "cell cortex" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IPI] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0005938 Gene3D:3.30.160.20 GO:GO:0030529 GO:GO:0003725
HOVERGEN:HBG005013 EMBL:AY342402 UniGene:Xl.22905
ProteinModelPortal:Q6JPI2 SMR:Q6JPI2 Uniprot:Q6JPI2
Length = 712
Score = 155 (59.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 58/206 (28%), Positives = 99/206 (48%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +S + E+ +R + +E+ + G + F ++ + E ++ G GKSKK +
Sbjct: 294 NKSEISQVFEIALKRNMSVNFEVTKETGPPHMKSFLTKV-IVGE---FLGEGEGKSKKIS 349
Query: 135 KHNAAKSVLDQL--------IGRDDEKLMCQKENLFKV--EP------NPVGQLQEACMT 178
K NAA +VL++L + + K+ + +++ K+ P NP+ +L +
Sbjct: 350 KKNAAIAVLEELRKLPPLPTVEKMRPKIKKKTKSIVKLPTSPEYGQGMNPISRLAQIQQA 409
Query: 179 RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLE-TVP 237
+K P Y GLP R F + V + EG G +KK+AKR AA NML+ L VP
Sbjct: 410 KKGKEPEYILITERGLPRRREFVMQVKVGNHAAEGSGTNKKVAKRNAAENMLEILGFKVP 469
Query: 238 IEIPEK--KQGEDVDEKGESNGLKHT 261
P+ K E + K +G K T
Sbjct: 470 PPPPKPALKTEEKLPVKKPGDGRKVT 495
Score = 135 (52.6 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 47/156 (30%), Positives = 78/156 (50%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD--DEKLM----CQKEN 160
PI Y++ L+ + + G G++++ AKH+AA L L D+ + +EN
Sbjct: 236 PIL-YQVELSVGGQQFH--GKGRTRQAAKHDAAARALKSLHHEPLPDKPALNGKAADEEN 292
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
L K E + Q+ E + R +E + TG PH + F V + EG GKSKKI
Sbjct: 293 LNKSE---ISQVFEIALKRNMSVN-FEVTKETGPPHMKSFLTKVIVGEFLGEGEGKSKKI 348
Query: 221 AKREAALNMLKFLETVPIEIPE-KKQGEDVDEKGES 255
+K+ AA+ +L+ L +P +P +K + +K +S
Sbjct: 349 SKKNAAIAVLEELRKLP-PLPTVEKMRPKIKKKTKS 383
Score = 50 (22.7 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 18/90 (20%), Positives = 38/90 (42%)
Query: 19 MPSTVSLDCNEVKVEENSPSRVLFDNNEIKQIPKVSTNNLPLEEAARLEVMRLNTGDRTP 78
+P +S+ + + R L N P V+++ P ++ + N ++TP
Sbjct: 30 LPQPLSIPSTASPLPSENAGRPL--QNSALPSPSVTSSG-PTAVSSNMA----NPKEKTP 82
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPI 108
+ L+ EL P Y+L+ +G + +
Sbjct: 83 MCLVNELARFNKIQPVYKLLSEQGPAHSKV 112
Score = 49 (22.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 315 SDELKY--RVSFVDIE----EKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIEAVYRA 368
S++L Y RV +++E K+ + F SL+ ++ P + G G +E A A
Sbjct: 601 SEQLNYLSRVQGLEVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMA---A 657
Query: 369 LDFLQIMN 376
L+ L++++
Sbjct: 658 LNILKLLS 665
>UNIPROTKB|E5RJN7 [details] [associations]
symbol:STAU2 "Double-stranded RNA-binding protein Staufen
homolog 2" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC018620 EMBL:AC027018
EMBL:AC100784 HGNC:HGNC:11371 ChiTaRS:STAU2 IPI:IPI00982554
ProteinModelPortal:E5RJN7 SMR:E5RJN7 PRIDE:E5RJN7
Ensembl:ENST00000518767 ArrayExpress:E5RJN7 Bgee:E5RJN7
Uniprot:E5RJN7
Length = 320
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 65/242 (26%), Positives = 107/242 (44%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 33 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 88
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 89 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 148
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 149 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 208
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 209 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 268
Query: 292 EK 293
K
Sbjct: 269 PK 270
>UNIPROTKB|F8VPI7 [details] [associations]
symbol:STAU2 "Double-stranded RNA-binding protein Staufen
homolog 2" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC018620 EMBL:AC027018
EMBL:AC100784 RefSeq:NP_001157856.1 RefSeq:NP_055208.2
UniGene:Hs.561815 DNASU:27067 GeneID:27067 KEGG:hsa:27067 CTD:27067
HGNC:HGNC:11371 ChiTaRS:STAU2 GenomeRNAi:27067 NextBio:49639
IPI:IPI00943844 SMR:F8VPI7 Ensembl:ENST00000355780
Ensembl:ENST00000522509 UCSC:uc003xzp.3 Uniprot:F8VPI7
Length = 479
Score = 152 (58.6 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 65/242 (26%), Positives = 107/242 (44%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 52/213 (24%), Positives = 93/213 (43%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 47 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 101
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK 158
N+ P+ K + + LT + + G GK+++ A+HNAA L L + Q
Sbjct: 102 YNQRYHCPVPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPERSPQN 159
Query: 159 ENLFK-------VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE 211
K + + + E + R P +E + +G PH + F V +
Sbjct: 160 GESGKDVDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSVGEFSA 218
Query: 212 EGMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
EG G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 219 EGEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 251
>MGI|MGI:1352508 [details] [associations]
symbol:Stau2 "staufen (RNA binding protein) homolog 2
(Drosophila)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005874 "microtubule" evidence=IEA] [GO:0006810
"transport" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 MGI:MGI:1352508
GO:GO:0005783 GO:GO:0005730 GO:GO:0006810 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0005874 GeneTree:ENSGT00530000063014
eggNOG:NOG299502 HOGENOM:HOG000231025 HOVERGEN:HBG005013 CTD:27067
OrthoDB:EOG44F68V ChiTaRS:STAU2 EMBL:AF459099 EMBL:AF459100
EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118
IPI:IPI00404785 IPI:IPI00407779 IPI:IPI00621913 IPI:IPI00649849
IPI:IPI00989318 RefSeq:NP_001104742.1 RefSeq:NP_079579.2
UniGene:Mm.216257 PDB:1UHZ PDBsum:1UHZ ProteinModelPortal:Q8CJ67
SMR:Q8CJ67 STRING:Q8CJ67 PhosphoSite:Q8CJ67 PRIDE:Q8CJ67
Ensembl:ENSMUST00000027052 Ensembl:ENSMUST00000054668
Ensembl:ENSMUST00000115359 Ensembl:ENSMUST00000144138
Ensembl:ENSMUST00000159558 Ensembl:ENSMUST00000162007
Ensembl:ENSMUST00000162435 Ensembl:ENSMUST00000162627
Ensembl:ENSMUST00000162751 GeneID:29819 KEGG:mmu:29819
UCSC:uc007ajn.2 UCSC:uc007ajo.2 UCSC:uc007ajq.2 UCSC:uc007ajr.2
InParanoid:Q8CJ67 OMA:LSPVQMT EvolutionaryTrace:Q8CJ67
NextBio:306990 Bgee:Q8CJ67 Genevestigator:Q8CJ67
GermOnline:ENSMUSG00000025920 Uniprot:Q8CJ67
Length = 570
Score = 153 (58.9 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 66/242 (27%), Positives = 106/242 (43%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + RK
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 321 EKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ P K GE+ G G ++T L+P + ++++ H V S T L
Sbjct: 381 LQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 52/212 (24%), Positives = 96/212 (45%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 79 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 133
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQ 157
N+ P+ K + + LT + + G GK+++ A+HNAA L L EK
Sbjct: 134 YNQRYHCPMPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQN 191
Query: 158 KENLFKVEPNPVGQLQEACMT-----RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
E+ +++ + E + ++ P +E + +G PH + F V + E
Sbjct: 192 GESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAE 251
Query: 213 GMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
G G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 252 GEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 283
>RGD|621479 [details] [associations]
symbol:Stau2 "staufen, RNA binding protein, homolog 2
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 RGD:621479 GO:GO:0005783
GO:GO:0005730 GO:GO:0006810 Gene3D:3.30.160.20 GO:GO:0003725
GO:GO:0005874 eggNOG:NOG299502 HOVERGEN:HBG005013 CTD:27067
OrthoDB:EOG44F68V EMBL:AF483620 EMBL:AF483621 EMBL:AY684789
EMBL:AY684790 EMBL:AY549445 EMBL:AY549446 EMBL:AY549447
EMBL:AY549448 EMBL:BC085705 IPI:IPI00200586 IPI:IPI00471612
IPI:IPI00480849 IPI:IPI00650137 RefSeq:NP_001007150.1
RefSeq:NP_001007151.1 RefSeq:NP_604461.2 UniGene:Rn.73714
ProteinModelPortal:Q68SB1 SMR:Q68SB1 STRING:Q68SB1
PhosphoSite:Q68SB1 PRIDE:Q68SB1 GeneID:171500 KEGG:rno:171500
UCSC:RGD:621479 NextBio:622465 ArrayExpress:Q68SB1
Genevestigator:Q68SB1 Uniprot:Q68SB1
Length = 571
Score = 153 (58.9 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 66/242 (27%), Positives = 106/242 (43%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + RK
Sbjct: 261 KKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 57/232 (24%), Positives = 104/232 (44%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 79 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 133
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQ 157
N+ P+ K + + LT + + G GK+++ A+HNAA L L EK
Sbjct: 134 YNQRYHCPMPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQN 191
Query: 158 KENLFKVEPNPVGQLQEACMT-----RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
E+ +++ + E + ++ P +E + +G PH + F V + E
Sbjct: 192 GESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAE 251
Query: 213 GMGKSKKIAKREAALNMLKFLETVP----IEIPE---KKQGEDVDEKGESNG 257
G G SKK++K+ AA +L+ L+ +P IE P+ KK+ + + + G G
Sbjct: 252 GEGNSKKLSKKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYG 303
>UNIPROTKB|F1RWI7 [details] [associations]
symbol:STAU2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
GeneTree:ENSGT00530000063014 EMBL:CU462961 EMBL:CU693411
Ensembl:ENSSSCT00000006773 OMA:SHQNGES Uniprot:F1RWI7
Length = 375
Score = 150 (57.9 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 65/242 (26%), Positives = 106/242 (43%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 69 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 124
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 125 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 184
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 185 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 244
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 245 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 304
Query: 292 EK 293
K
Sbjct: 305 PK 306
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 40/146 (27%), Positives = 67/146 (45%)
Query: 107 PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFK-- 163
PI K + + LT + + G GK+++ A+HNAA L L + Q K
Sbjct: 5 PIPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEM 62
Query: 164 -----VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
+ + + E + R P +E + +G PH + F V + EG G SK
Sbjct: 63 DDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSK 121
Query: 219 KIAKREAALNMLKFLETVP-IEIPEK 243
K++K+ AA +L+ L+ +P + + EK
Sbjct: 122 KLSKKRAATTVLQELKKLPPLPVVEK 147
>UNIPROTKB|E7EPX0 [details] [associations]
symbol:STAU2 "Double-stranded RNA-binding protein Staufen
homolog 2" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC018620 EMBL:AC027018
EMBL:AC100784 HGNC:HGNC:11371 ChiTaRS:STAU2 IPI:IPI00973515
ProteinModelPortal:E7EPX0 SMR:E7EPX0 PRIDE:E7EPX0
Ensembl:ENST00000521727 ArrayExpress:E7EPX0 Bgee:E7EPX0
Uniprot:E7EPX0
Length = 491
Score = 152 (58.6 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 65/242 (26%), Positives = 107/242 (44%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 185 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 240
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 241 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 300
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 301 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 360
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 361 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 420
Query: 292 EK 293
K
Sbjct: 421 PK 422
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 52/213 (24%), Positives = 93/213 (43%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 59 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 113
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK 158
N+ P+ K + + LT + + G GK+++ A+HNAA L L + Q
Sbjct: 114 YNQRYHCPVPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPERSPQN 171
Query: 159 ENLFK-------VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE 211
K + + + E + R P +E + +G PH + F V +
Sbjct: 172 GESGKDVDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSVGEFSA 230
Query: 212 EGMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
EG G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 231 EGEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 263
>UNIPROTKB|E7EVJ4 [details] [associations]
symbol:STAU2 "Double-stranded RNA-binding protein Staufen
homolog 2" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC018620 EMBL:AC027018
EMBL:AC100784 HGNC:HGNC:11371 ChiTaRS:STAU2 IPI:IPI01013767
ProteinModelPortal:E7EVJ4 SMR:E7EVJ4 PRIDE:E7EVJ4
Ensembl:ENST00000519961 UCSC:uc003xzo.3 ArrayExpress:E7EVJ4
Bgee:E7EVJ4 Uniprot:E7EVJ4
Length = 511
Score = 152 (58.6 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 65/242 (26%), Positives = 107/242 (44%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 52/213 (24%), Positives = 93/213 (43%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 79 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 133
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK 158
N+ P+ K + + LT + + G GK+++ A+HNAA L L + Q
Sbjct: 134 YNQRYHCPVPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPERSPQN 191
Query: 159 ENLFK-------VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE 211
K + + + E + R P +E + +G PH + F V +
Sbjct: 192 GESGKDVDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSVGEFSA 250
Query: 212 EGMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
EG G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 251 EGEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 283
>UNIPROTKB|E9PH62 [details] [associations]
symbol:STAU2 "Double-stranded RNA-binding protein Staufen
homolog 2" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC018620 EMBL:AC027018
EMBL:AC100784 IPI:IPI01009003 RefSeq:NP_001157853.1
UniGene:Hs.561815 DNASU:27067 GeneID:27067 KEGG:hsa:27067 CTD:27067
HGNC:HGNC:11371 ChiTaRS:STAU2 GenomeRNAi:27067 NextBio:49639
ProteinModelPortal:E9PH62 SMR:E9PH62 PRIDE:E9PH62
Ensembl:ENST00000522695 UCSC:uc003xzn.3 ArrayExpress:E9PH62
Bgee:E9PH62 Uniprot:E9PH62
Length = 538
Score = 152 (58.6 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 65/242 (26%), Positives = 107/242 (44%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 52/213 (24%), Positives = 93/213 (43%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 47 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 101
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK 158
N+ P+ K + + LT + + G GK+++ A+HNAA L L + Q
Sbjct: 102 YNQRYHCPVPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPERSPQN 159
Query: 159 ENLFK-------VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE 211
K + + + E + R P +E + +G PH + F V +
Sbjct: 160 GESGKDVDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSVGEFSA 218
Query: 212 EGMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
EG G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 219 EGEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 251
>UNIPROTKB|E2QVY7 [details] [associations]
symbol:STAU2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 Ensembl:ENSCAFT00000012917 Uniprot:E2QVY7
Length = 479
Score = 151 (58.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 65/242 (26%), Positives = 106/242 (43%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 173 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 228
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 229 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 288
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 289 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 348
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 349 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 408
Query: 292 EK 293
K
Sbjct: 409 PK 410
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 52/212 (24%), Positives = 96/212 (45%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 47 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 101
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQ 157
N+ P+ K + + LT + + G GK+++ A+HNAA L L EK
Sbjct: 102 YNQRYHCPMPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQN 159
Query: 158 KENLFKVEPNPVGQLQEACMT-----RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
E+ +++ + E + ++ P +E + +G PH + F V + E
Sbjct: 160 GESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAE 219
Query: 213 GMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
G G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 220 GEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 251
>UNIPROTKB|Q9NUL3 [details] [associations]
symbol:STAU2 "Double-stranded RNA-binding protein Staufen
homolog 2" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0005783 GO:GO:0005730 GO:GO:0006810 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0005874 eggNOG:NOG299502 HOGENOM:HOG000231025
HOVERGEN:HBG005013 EMBL:Y19062 EMBL:AF459097 EMBL:AF459098
EMBL:AK001576 EMBL:AK002152 EMBL:AK023314 EMBL:CR627442
EMBL:AC018620 EMBL:AC027018 EMBL:AC100784 EMBL:BC008369
EMBL:BC008370 IPI:IPI00164481 IPI:IPI00300789 IPI:IPI00644696
IPI:IPI01009003 IPI:IPI01009624 RefSeq:NP_001157852.1
RefSeq:NP_001157853.1 RefSeq:NP_001157854.1 RefSeq:NP_001157855.1
RefSeq:NP_001157856.1 RefSeq:NP_001157857.1 RefSeq:NP_055208.2
UniGene:Hs.561815 ProteinModelPortal:Q9NUL3 SMR:Q9NUL3
IntAct:Q9NUL3 MINT:MINT-1426106 STRING:Q9NUL3 PhosphoSite:Q9NUL3
DMDM:73919458 PaxDb:Q9NUL3 PRIDE:Q9NUL3 DNASU:27067
Ensembl:ENST00000524104 Ensembl:ENST00000524300 GeneID:27067
KEGG:hsa:27067 UCSC:uc003xzq.3 UCSC:uc003xzs.3 CTD:27067
GeneCards:GC08M074332 H-InvDB:HIX0007585 HGNC:HGNC:11371
HPA:CAB020836 HPA:HPA019155 MIM:605920 neXtProt:NX_Q9NUL3
PharmGKB:PA36189 InParanoid:Q9NUL3 OrthoDB:EOG44F68V ChiTaRS:STAU2
GenomeRNAi:27067 NextBio:49639 Bgee:Q9NUL3 CleanEx:HS_STAU2
Genevestigator:Q9NUL3 GermOnline:ENSG00000040341 Uniprot:Q9NUL3
Length = 570
Score = 152 (58.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 65/242 (26%), Positives = 107/242 (44%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ +K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 52/213 (24%), Positives = 93/213 (43%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 79 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 133
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK 158
N+ P+ K + + LT + + G GK+++ A+HNAA L L + Q
Sbjct: 134 YNQRYHCPVPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPERSPQN 191
Query: 159 ENLFK-------VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE 211
K + + + E + R P +E + +G PH + F V +
Sbjct: 192 GESGKDMDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSVGEFSA 250
Query: 212 EGMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
EG G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 251 EGEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 283
>UNIPROTKB|E2QVY6 [details] [associations]
symbol:E2QVY6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 Ensembl:ENSCAFT00000012918 Uniprot:E2QVY6
Length = 517
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 65/242 (26%), Positives = 106/242 (43%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 52/212 (24%), Positives = 96/212 (45%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 79 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 133
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQ 157
N+ P+ K + + LT + + G GK+++ A+HNAA L L EK
Sbjct: 134 YNQRYHCPMPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQN 191
Query: 158 KENLFKVEPNPVGQLQEACMT-----RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
E+ +++ + E + ++ P +E + +G PH + F V + E
Sbjct: 192 GESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAE 251
Query: 213 GMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
G G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 252 GEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 283
>UNIPROTKB|F6Y2K0 [details] [associations]
symbol:STAU2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GeneTree:ENSGT00530000063014 CTD:27067
Ensembl:ENSCAFT00000012918 EMBL:AAEX03015869 RefSeq:XP_003433714.1
GeneID:477913 KEGG:cfa:477913 Uniprot:F6Y2K0
Length = 570
Score = 151 (58.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 65/242 (26%), Positives = 106/242 (43%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 205 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 260
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 261 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 320
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 321 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 380
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 381 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 440
Query: 292 EK 293
K
Sbjct: 441 PK 442
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 52/212 (24%), Positives = 96/212 (45%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 79 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 133
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQ 157
N+ P+ K + + LT + + G GK+++ A+HNAA L L EK
Sbjct: 134 YNQRYHCPMPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQN 191
Query: 158 KENLFKVEPNPVGQLQEACMT-----RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
E+ +++ + E + ++ P +E + +G PH + F V + E
Sbjct: 192 GESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAE 251
Query: 213 GMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
G G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 252 GEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 283
>UNIPROTKB|F6Y2K7 [details] [associations]
symbol:STAU2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GeneTree:ENSGT00530000063014 OMA:LSPVQMT
Ensembl:ENSCAFT00000012917 EMBL:AAEX03015869 Uniprot:F6Y2K7
Length = 624
Score = 151 (58.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 65/242 (26%), Positives = 106/242 (43%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 221 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 276
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 277 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 336
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 337 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 396
Query: 238 IEIPEKKQGEDVDEKGESNGLKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLL 291
++ K GE+ G G ++T L+P + ++++ H V S T G L
Sbjct: 397 LQDQLDKTGENKGWSGPKAGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLS 456
Query: 292 EK 293
K
Sbjct: 457 PK 458
Score = 123 (48.4 bits), Expect = 0.00020, P = 0.00020
Identities = 52/212 (24%), Positives = 96/212 (45%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 95 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 149
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMCQ 157
N+ P+ K + + LT + + G GK+++ A+HNAA L L EK
Sbjct: 150 YNQRYHCPMPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPEKSPQN 207
Query: 158 KENLFKVEPNPVGQLQEACMT-----RKWPPPVYETEETTGLPHERMFTVCAYVNVYKEE 212
E+ +++ + E + ++ P +E + +G PH + F V + E
Sbjct: 208 GESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAE 267
Query: 213 GMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
G G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 268 GEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 299
>UNIPROTKB|F8VTT7 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC023509 HGNC:HGNC:11569
IPI:IPI01021810 ProteinModelPortal:F8VTT7 SMR:F8VTT7
Ensembl:ENST00000548971 ArrayExpress:F8VTT7 Bgee:F8VTT7
Uniprot:F8VTT7
Length = 94
Score = 123 (48.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 73 TGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKK 132
TG P SL+QE +R G P Y+L++ EG ++P F +R+++ S G G SKK
Sbjct: 12 TGCGLP-SLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTS----CTGQGPSKK 66
Query: 133 EAKHNAAKSVLDQLIG 148
AKH AA+ L L G
Sbjct: 67 AAKHKAAEVALKHLKG 82
>UNIPROTKB|Q5JW28 [details] [associations]
symbol:STAU1 "Double-stranded RNA-binding protein Staufen
homolog 1" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AL133174 UniGene:Hs.596704
HGNC:HGNC:11370 HOGENOM:HOG000231025 ChiTaRS:STAU1 IPI:IPI00645009
SMR:Q5JW28 STRING:Q5JW28 Ensembl:ENST00000437404 Uniprot:Q5JW28
Length = 199
Score = 133 (51.9 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 44/142 (30%), Positives = 71/142 (50%)
Query: 107 PIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLMC-----QKEN 160
P Y++ L+ + + G GK+++ AKH+AA L L E+L ++EN
Sbjct: 42 PPLLYQVELSVGGQQFN--GKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEEN 99
Query: 161 LFKVEPNPVGQLQEACMTRKWPP-----PVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
L K E + Q+ E + R P P+ + +G PH + F V + EG G
Sbjct: 100 LNKSE---ISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEG 156
Query: 216 KSKKIAKREAALNMLKFLETVP 237
KSKKI+K+ AA+ +L+ L+ +P
Sbjct: 157 KSKKISKKNAAIAVLEELKKLP 178
>FB|FBgn0003520 [details] [associations]
symbol:stau "staufen" species:7227 "Drosophila melanogaster"
[GO:0007316 "pole plasm RNA localization" evidence=IMP] [GO:0007315
"pole plasm assembly" evidence=NAS;IMP] [GO:0045450 "bicoid mRNA
localization" evidence=NAS;TAS] [GO:0007318 "pole plasm protein
localization" evidence=IMP;TAS] [GO:0006403 "RNA localization"
evidence=IMP] [GO:0045179 "apical cortex" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0055059 "asymmetric
neuroblast division" evidence=NAS] [GO:0005938 "cell cortex"
evidence=IDA] [GO:0016324 "apical plasma membrane" evidence=IDA]
[GO:0009925 "basal plasma membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0045180 "basal cortex"
evidence=NAS;IDA;TAS] [GO:0045177 "apical part of cell"
evidence=IDA] [GO:0048477 "oogenesis" evidence=TAS] [GO:0046011
"regulation of oskar mRNA translation" evidence=TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization"
evidence=IGI;TAS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA;ISS;TAS] [GO:0008298 "intracellular mRNA localization"
evidence=NAS;TAS] [GO:0005875 "microtubule associated complex"
evidence=ISS] [GO:0007017 "microtubule-based process" evidence=ISS]
[GO:0008017 "microtubule binding" evidence=ISS;NAS] [GO:0045451
"pole plasm oskar mRNA localization" evidence=TAS] [GO:0008104
"protein localization" evidence=TAS] [GO:0019094 "pole plasm mRNA
localization" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0046012 "positive regulation of oskar mRNA
translation" evidence=NAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0007400 "neuroblast fate determination"
evidence=TAS] [GO:0045167 "asymmetric protein localization involved
in cell fate determination" evidence=TAS] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IGI]
[GO:0010606 "positive regulation of cytoplasmic mRNA processing
body assembly" evidence=IMP] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 EMBL:AE013599
GO:GO:0045167 GO:GO:0005875 Gene3D:3.30.160.20 GO:GO:0007616
GO:GO:0045180 GO:GO:0007400 GO:GO:0045179 GO:GO:0003730
GO:GO:0003725 GO:GO:0000932 GO:GO:0008017 GO:GO:0007017
GO:GO:0007318 GO:GO:0010606 GO:GO:0045451 GO:GO:0055059
GO:GO:0045450 GO:GO:0007317 GO:GO:0060293
GeneTree:ENSGT00530000063014 eggNOG:NOG299502 ChiTaRS:STAU1
EMBL:M69111 EMBL:BT003228 EMBL:BT010297 PIR:A40315
RefSeq:NP_001163185.1 RefSeq:NP_476751.1 RefSeq:NP_725748.1
UniGene:Dm.4722 PDB:1EKZ PDB:1STU PDBsum:1EKZ PDBsum:1STU
ProteinModelPortal:P25159 SMR:P25159 IntAct:P25159 MINT:MINT-112231
STRING:P25159 PaxDb:P25159 EnsemblMetazoa:FBtr0086783 GeneID:37065
KEGG:dme:Dmel_CG5753 UCSC:CG5753-RA CTD:37065 FlyBase:FBgn0003520
InParanoid:P25159 OMA:RTHITPT OrthoDB:EOG48PK15 PhylomeDB:P25159
EvolutionaryTrace:P25159 GenomeRNAi:37065 NextBio:801768
Bgee:P25159 GermOnline:CG5753 GO:GO:0046012 Uniprot:P25159
Length = 1026
Score = 117 (46.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 63/265 (23%), Positives = 114/265 (43%)
Query: 125 IGSGKSKKEAKHNAAKSVLD----QLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRK 180
+G G++ ++AKH+AA L Q I +E L + K +P+ Q+ E + R
Sbjct: 534 VGIGRTLQQAKHDAAARALQVLKTQAISASEEALEDSMDEGDK--KSPISQVHEIGIKRN 591
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEI 240
++ G H + F V EG G KK++K+ AA ML L+ +P
Sbjct: 592 MTVH-FKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQKLPPLT 650
Query: 241 PEKK---QGEDVDEKGESNGLKHTHDSTFLT--PQILKKIQQYHTVFSQKTKGPLLEKLL 295
P K+ + V G+S T P K ++ +K P +KL+
Sbjct: 651 PTKQTPLKRIKVKTPGKSGAAAREGSVVSGTDGPTQTGKPER------RKRLNPPKDKLI 704
Query: 296 STRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKS---KADGFQSLLQLTTTPVTVFCG 352
+D+ ++PI L L K + ++ K+ A + +++++ + T G
Sbjct: 705 D----MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGSTAR-G 759
Query: 353 TGASIEVAK---IEAVYRALDFLQI 374
TG S ++AK +A++ L+ +Q+
Sbjct: 760 TGNSKKLAKRNAAQALFELLEAVQV 784
Score = 99 (39.9 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 35/129 (27%), Positives = 57/129 (44%)
Query: 128 GKSKKEAKHNAAKSVLD--QLIGRDD--EKLMCQKENLFKVEP--NPVGQLQEACMTRKW 181
GKS A+ + S D G+ + ++L K+ L ++ NP+ +L + TRK
Sbjct: 666 GKSGAAAREGSVVSGTDGPTQTGKPERRKRLNPPKDKLIDMDDADNPITKLIQLQQTRKE 725
Query: 182 PPPVYETEETTG--LPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIE 239
P++E G R F + + G G SKK+AKR AA + + LE V +
Sbjct: 726 KEPIFELIAKNGNETARRREFVMEVSASGSTARGTGNSKKLAKRNAAQALFELLEAVQVT 785
Query: 240 IPEKKQGED 248
+ Q +
Sbjct: 786 PTNETQSSE 794
Score = 70 (29.7 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 304 VEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQSLLQLTTTPVTVFCGTGASIEVAKIE 363
+++ +LYL L D + V+F D K + F +++ L+T P + G G S E ++ +
Sbjct: 952 MKEQLLYLSKLLD---FEVNFSDYP-KGNHNEFLTIVTLSTHPPQICHGVGKSSEESQND 1007
Query: 364 AVYRALDFL 372
A AL L
Sbjct: 1008 AASNALKIL 1016
Score = 67 (28.6 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 34/136 (25%), Positives = 54/136 (39%)
Query: 13 DKADINMPSTVSLDCNEVKVEENSPSRVLFDNNEIKQIPKVSTNNLPLEEAARLE-VMRL 71
+ A N S ++ +E +E++ + VST N+ A E
Sbjct: 244 NNATTNSTSNSTVIASEPVTQEDTSQKPETRQEPASADDHVSTGNIDATGALSNEDTSSS 303
Query: 72 NTG--DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGK 129
G D+TP+ L+ EL +Y L + G + F + L E Y A G K
Sbjct: 304 GRGGKDKTPMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEE--YSADGF-K 360
Query: 130 SKKEAKHNAAKSVLDQ 145
KK A+H AA +++
Sbjct: 361 IKK-AQHLAASKAIEE 375
>FB|FBgn0031951 [details] [associations]
symbol:r2d2 "r2d2" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0035087 "siRNA loading onto RISC involved in RNA interference"
evidence=IDA;TAS] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0030713
"ovarian follicle cell stalk formation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0070918 "production of small RNA
involved in gene silencing by RNA" evidence=IDA] [GO:0070868
"heterochromatin organization involved in chromatin silencing"
evidence=IMP] [GO:0070920 "regulation of production of small RNA
involved in gene silencing by RNA" evidence=IDA] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0051607
GO:GO:0003725 GO:GO:0016442 GO:GO:0070868 GO:GO:0030422
GO:GO:0035087 GO:GO:0030713 GO:GO:0070920 EMBL:DQ252345
ProteinModelPortal:Q2Q0K7 SMR:Q2Q0K7 STRING:Q2Q0K7 PaxDb:Q2Q0K7
PRIDE:Q2Q0K7 FlyBase:FBgn0031951 eggNOG:NOG278868 InParanoid:Q2Q0K7
OrthoDB:EOG483BMN ArrayExpress:Q2Q0K7 Bgee:Q2Q0K7 Uniprot:Q2Q0K7
Length = 311
Score = 137 (53.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 49/169 (28%), Positives = 79/169 (46%)
Query: 75 DRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+++ VS +QE +R P Y I G + K + L E A+G+G+SK++
Sbjct: 3 NKSAVSALQEFCARTQINLPTYSFIP--GEDGGYVCKVEL-LEIE-----ALGNGRSKRD 54
Query: 134 AKHNAAKSVLD--QLI-G----RDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPPPVY 186
AKH AA ++L QL+ G D + E L + + V +L++ C+ R+ P P
Sbjct: 55 AKHLAASNILRKIQLLPGIHGLMKDSTVGDLDEELTNLNRDMVKELRDYCVRREMPLPCI 114
Query: 187 ETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLET 235
E + +G P F C V G KK A++ AA+ ML + +
Sbjct: 115 EVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISS 163
>UNIPROTKB|G5E523 [details] [associations]
symbol:STAU2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
GeneTree:ENSGT00530000063014 EMBL:DAAA02038840 EMBL:DAAA02038841
EMBL:DAAA02038842 EMBL:DAAA02038843 Ensembl:ENSBTAT00000002684
OMA:CESGKEM Uniprot:G5E523
Length = 251
Score = 134 (52.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 56/195 (28%), Positives = 88/195 (45%)
Query: 50 IPKVSTNNLPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIF 109
IP+ S N E+ + E+ +++ +SL+ E+ +R +E+I+ G + F
Sbjct: 48 IPEKSAQNC---ESGK-EMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSF 103
Query: 110 KYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR------DDEKLMCQK--ENL 161
R+S+ S A G G SKK +K AA +VL +L + KL +K + +
Sbjct: 104 VTRVSVGEFS----AEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTI 159
Query: 162 FKVEP------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMG 215
K P NP+ +L + +K P Y G+P R F + V G G
Sbjct: 160 VKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTG 219
Query: 216 KSKKIAKREAALNML 230
+KKIAK+ AA ML
Sbjct: 220 PNKKIAKKNAAEAML 234
Score = 125 (49.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 43/146 (29%), Positives = 71/146 (48%)
Query: 107 PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD-DEKLM--CQ--KEN 160
P+ K + + LT + + G GK+++ A+HNAA L L EK C+ KE
Sbjct: 5 PVPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNCESGKEM 62
Query: 161 LFKVEPNP--VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSK 218
+ N + + E + R P +E + +G PH + F V + EG G SK
Sbjct: 63 DDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSK 121
Query: 219 KIAKREAALNMLKFLETVP-IEIPEK 243
K++K+ AA +L+ L+ +P + + EK
Sbjct: 122 KLSKKRAATTVLQELKKLPPLPVVEK 147
>UNIPROTKB|F1NCF0 [details] [associations]
symbol:STAU2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
GeneTree:ENSGT00530000063014 EMBL:AADN02024645 EMBL:AADN02024646
EMBL:AADN02024647 EMBL:AADN02024648 IPI:IPI00570821
Ensembl:ENSGALT00000025225 Uniprot:F1NCF0
Length = 472
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 55/212 (25%), Positives = 92/212 (43%)
Query: 58 LPLEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTS 117
LP A E +++ +S++ E+ +R +E+I+ G + F R+++
Sbjct: 260 LPQNGEAGKETEEDKDANKSEISVVFEIALKRNIPVSFEVIKESGPPHMKSFVTRVTVGE 319
Query: 118 ESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP--- 166
+ A G G SKK +K AA SVL +L + KL +K + + K P
Sbjct: 320 ----FTAEGEGNSKKLSKKRAAMSVLQELKKLPPLPVIEKPKLYFKKRPKTILKTGPEYG 375
Query: 167 ---NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
NP+ +L + +K P Y G+P R F + + G G +KKIAKR
Sbjct: 376 QGMNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKIGNEITTGTGPNKKIAKR 435
Query: 224 EAA---LNMLKFLETVPIEIPEKKQGEDVDEK 252
AA L L + + P++ +K + D +
Sbjct: 436 NAAEAMLLQLGYKASTPLQDQTEKVRTNCDAR 467
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 63/249 (25%), Positives = 108/249 (43%)
Query: 31 KVEENSPSRVLFDNNEIKQIPKVSTNNLPLEEAARLEVMRLN--TGDRTPVSLMQELLSR 88
K + + S+ L + K P+ NN+ + + LN R ++ + L +
Sbjct: 132 KAQHAAASKALNETTLPKPTPRPPKNNINNNPGSITPTVELNGLAMKRGEPAIYRPLDPK 191
Query: 89 RGTAPKYEL-IQIEGAINE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSV 142
P Y G N+ P+ K + + LT + + G GK+++ A+HNAA
Sbjct: 192 --PIPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNSEF--FGEGKTRQAARHNAAMKA 247
Query: 143 LDQLIGRD-DEKLM----CQKENLFKVEPNP--VGQLQEACMTRKWPPPVYETEETTGLP 195
L L EKL KE + N + + E + R P +E + +G P
Sbjct: 248 LQALQNEPIPEKLPQNGEAGKETEEDKDANKSEISVVFEIALKRNIPVS-FEVIKESGPP 306
Query: 196 HERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVP----IEIPE---KKQGED 248
H + F V + EG G SKK++K+ AA+++L+ L+ +P IE P+ KK+ +
Sbjct: 307 HMKSFVTRVTVGEFTAEGEGNSKKLSKKRAAMSVLQELKKLPPLPVIEKPKLYFKKRPKT 366
Query: 249 VDEKGESNG 257
+ + G G
Sbjct: 367 ILKTGPEYG 375
>ZFIN|ZDB-GENE-040426-687 [details] [associations]
symbol:stau2 "staufen, RNA binding protein, homolog
2 (Drosophila)" species:7955 "Danio rerio" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0008354 "germ cell
migration" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 ZFIN:ZDB-GENE-040426-687 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0007281 GO:GO:0003725 GO:GO:0008354
GeneTree:ENSGT00530000063014 CTD:27067 EMBL:CR318587 EMBL:CR405710
EMBL:CR936299 EMBL:CU041413 IPI:IPI00633205 RefSeq:NP_957219.2
UniGene:Dr.75888 Ensembl:ENSDART00000122903
Ensembl:ENSDART00000142457 GeneID:393899 KEGG:dre:393899
NextBio:20814877 Uniprot:F1QJT6
Length = 678
Score = 140 (54.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 56/204 (27%), Positives = 89/204 (43%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
++ +SL+ E+ +R +E+++ G + F R+++ S A G G SKK +K
Sbjct: 278 KSEISLVYEIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGEFS----AEGEGNSKKLSK 333
Query: 136 HNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRKW 181
AA S+L +L + K+ +K + + K P NP+ +L + +K
Sbjct: 334 KRAALSILQELKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPISRLAQIQQAKKE 393
Query: 182 PPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAALNMLKFLETVPIEIP 241
P Y G+P R F + V G G +KK+AKR AA ML L P
Sbjct: 394 KEPEYMLLSERGMPRRREFIMQVKVGTEVTTGTGPNKKVAKRNAAEAMLLQLG-YKASTP 452
Query: 242 EKKQGEDVDEKGESNGLKHTHDST 265
+ E +D KG NG + T
Sbjct: 453 LQNTPEKMDNKGW-NGQRAAFPET 475
Score = 137 (53.3 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 54/210 (25%), Positives = 96/210 (45%)
Query: 51 PKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGAINE- 106
PK +N+ P + L + + G+ P ++ + L + P Y G N+
Sbjct: 155 PKADSNSNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PIPNYRANYNFRGMFNQR 209
Query: 107 ---PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRD--DEKLMCQKEN 160
P+ K + + LT + + IG G++++ A+HNAA L L + C +E
Sbjct: 210 YHYPVPKVFYVQLTVGNNEF--IGEGRTRQAARHNAAMKALQALKNEPIPERPPQCSEEK 267
Query: 161 LFKVEPNP------VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGM 214
+ E N + + E + R P +E + +G PH + F V + EG
Sbjct: 268 K-ETEENSDASKSEISLVYEIALKRNLPVN-FEVLKESGPPHMKSFLTRVTVGEFSAEGE 325
Query: 215 GKSKKIAKREAALNMLKFLETVPI-EIPEK 243
G SKK++K+ AAL++L+ L+ +P+ + EK
Sbjct: 326 GNSKKLSKKRAALSILQELKKLPVLPVVEK 355
>UNIPROTKB|G5EA18 [details] [associations]
symbol:STAU2 "Double-stranded RNA-binding protein Staufen
homolog 2" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC018620 EMBL:AC027018
EMBL:AC100784 HGNC:HGNC:11371 ChiTaRS:STAU2
ProteinModelPortal:G5EA18 SMR:G5EA18 PRIDE:G5EA18
Ensembl:ENST00000521451 ArrayExpress:G5EA18 Bgee:G5EA18
Uniprot:G5EA18
Length = 291
Score = 133 (51.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 61/222 (27%), Positives = 96/222 (43%)
Query: 95 YELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGR----- 149
+E+I+ G + F R+S+ S A G G SKK +K AA +VL +L
Sbjct: 5 FEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLSKKRAATTVLQELKKLPPLPV 60
Query: 150 -DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRKWPPPVYETEETTGLPHERMF 200
+ KL +K + + K P NP+ +L + +K P Y G+P R F
Sbjct: 61 VEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREF 120
Query: 201 TVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVPIEIPEKKQGEDVDEKGESNG 257
+ V G G +KKIAK+ AA L L + + ++ +K GE+ G G
Sbjct: 121 VMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENKGWSGPKPG 180
Query: 258 LKHTHDST-----FLTPQILKKIQ-QYHTVFSQKTKGPLLEK 293
++T L+P + ++++ H V S T G L K
Sbjct: 181 FPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPK 222
>UNIPROTKB|E7EVI1 [details] [associations]
symbol:STAU2 "Double-stranded RNA-binding protein Staufen
homolog 2" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AC018620 EMBL:AC027018
EMBL:AC100784 HGNC:HGNC:11371 ChiTaRS:STAU2 IPI:IPI00976647
ProteinModelPortal:E7EVI1 SMR:E7EVI1 Ensembl:ENST00000518981
ArrayExpress:E7EVI1 Bgee:E7EVI1 Uniprot:E7EVI1
Length = 390
Score = 135 (52.6 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 55/200 (27%), Positives = 89/200 (44%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
+++ +SL+ E+ +R +E+I+ G + F R+S+ S A G G SKK +
Sbjct: 185 NKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFS----AEGEGNSKKLS 240
Query: 135 KHNAAKSVLDQLIGR------DDEKLMCQK--ENLFKVEP------NPVGQLQEACMTRK 180
K AA +VL +L + KL +K + + K P NP+ +L + +K
Sbjct: 241 KKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKK 300
Query: 181 WPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA---LNMLKFLETVP 237
P Y G+P R F + V G G +KKIAK+ AA L L + +
Sbjct: 301 EKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN 360
Query: 238 IEIPEKKQGEDVDEKGESNG 257
++ +K GE+ G G
Sbjct: 361 LQDQLEKTGENKGWSGPKPG 380
Score = 123 (48.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 52/213 (24%), Positives = 93/213 (43%)
Query: 47 IKQIPKVSTNNLP--LEEAARLEVMRLNTGDRTPVSLMQELLSRRGTAPKYEL-IQIEGA 103
+++ PK + NN P + L + + G+ P ++ + L + P Y G
Sbjct: 59 VQKPPKSNVNNNPGSITPTVELNGLAMKRGE--P-AIYRPLDPK--PFPNYRANYNFRGM 113
Query: 104 INE----PIFK-YRISLTSESRLYVAIGSGKSKKEAKHNAAKSVLDQLIGRDDEKLMCQK 158
N+ P+ K + + LT + + G GK+++ A+HNAA L L + Q
Sbjct: 114 YNQRYHCPVPKIFYVQLTVGNNEF--FGEGKTRQAARHNAAMKALQALQNEPIPERSPQN 171
Query: 159 ENLFK-------VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE 211
K + + + E + R P +E + +G PH + F V +
Sbjct: 172 GESGKDVDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSVGEFSA 230
Query: 212 EGMGKSKKIAKREAALNMLKFLETVP-IEIPEK 243
EG G SKK++K+ AA +L+ L+ +P + + EK
Sbjct: 231 EGEGNSKKLSKKRAATTVLQELKKLPPLPVVEK 263
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 127 (49.8 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 48/158 (30%), Positives = 78/158 (49%)
Query: 152 EKLMCQKENLFKVEP-NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK 210
++++ K++L VEP N G+L E C KWP P++ +E G +E F + +
Sbjct: 292 KQMVVDKDSLH-VEPVNGRGELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPN 350
Query: 211 EEGM----G--KSKKI-AKREAALNMLKFLET--VPIEIPEKKQGEDVDEKGESNGLKHT 261
EG G KSKK A+ A +M++ LE+ V + I ++ + +DEK
Sbjct: 351 IEGTFHMKGDIKSKKKQAENSLAYHMIRALESSLVSLVISNLQKPKSLDEKNNPLLFSSE 410
Query: 262 HDSTFLTPQILKKIQQYHTVFSQKTKGPLLEKLLSTRN 299
DS+ + ++KI Y F KT LL++LL+ N
Sbjct: 411 MDSSV---EAVEKILNYS--FVNKT---LLKELLTHNN 440
Score = 51 (23.0 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 290 LLEKLLSTRNLIDEVEDPILYLEDLSDELKYRVSFVDIEEKSKADGFQ-SLLQLTTTPVT 348
LLE + + +L +++ P L L L+D+ ++ F SK G + ++ Q+ +
Sbjct: 564 LLEPIYTLDDLRMQLKQPFLMLFRLADKHGKQIDF----RYSKDGGSRKNIAQVYMDDMF 619
Query: 349 VFCGTGASIEVAKIEAVYRALDFL 372
+ G I+ AK+ A A+ L
Sbjct: 620 IASGCAKRIDTAKLLAAEEAIQKL 643
Score = 40 (19.1 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 26 DCNEVKVEENSPSRVLFDNNEIKQIPKVSTNNLPLEEAARLEVM 69
DC +V +E+ + E+ + VS N+L +E ++ EV+
Sbjct: 206 DCLDVDLEDVKGKSFEICSTELFSLSTVSENSLT-DEMSQEEVV 248
Score = 39 (18.8 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 42 FDNNEIKQIPKVSTNNLPLEEAARLEV 68
+ N ++K++ + T N+ E+ AR+ V
Sbjct: 55 YPNLKVKELRDLRTANVSNEKFARIAV 81
>ZFIN|ZDB-GENE-080422-1 [details] [associations]
symbol:eif2ak2 "eukaryotic translation initiation
factor 2-alpha kinase 2" species:7955 "Danio rerio" [GO:0004672
"protein kinase activity" evidence=IEA;IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0004674 "protein serine/threonine kinase activity"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
InterPro:IPR000719 InterPro:IPR001159 InterPro:IPR008271
InterPro:IPR011009 InterPro:IPR017441 Pfam:PF00035 Pfam:PF00069
PROSITE:PS00107 PROSITE:PS00108 PROSITE:PS50011 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 ZFIN:ZDB-GENE-080422-1
GO:GO:0005524 SUPFAM:SSF56112 GO:GO:0004674 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0004672 GO:GO:0003725
GeneTree:ENSGT00530000062984 EMBL:CU929278 IPI:IPI00834557
Ensembl:ENSDART00000099517 Uniprot:F1RAF5
Length = 682
Score = 126 (49.4 bits), Expect = 0.00010, P = 0.00010
Identities = 51/169 (30%), Positives = 76/169 (44%)
Query: 80 SLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNAA 139
SL+ E + ++E +G + F R + + G+GK+KKEAK NAA
Sbjct: 10 SLLNEYQQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQK---FPDGTGKTKKEAKQNAA 66
Query: 140 KSVLDQLIG-RDDEKLMCQKENLF--KV--EPNPVGQLQEACMTRKWPPPVYETEETTGL 194
K+ L+ L DE EN+ K+ PN L E + +++ E+T +
Sbjct: 67 KNALEGLKSTHSDEPTPSPVENISVSKIASHPNYTCWLNEHSQKSRL---MFKACESTKM 123
Query: 195 PHERMFTVCAYVNVY----KE--EGMGKSKKIAKREAALNMLKFLETVP 237
+ +C YV Y KE EG GK+KK AK AAL + + L P
Sbjct: 124 DPGNLTRLCTYVCKYVCDDKEFPEGYGKNKKEAKEAAALQVYEELNRTP 172
>UNIPROTKB|Q91550 [details] [associations]
symbol:ilf3-a "Interleukin enhancer-binding factor 3-A"
species:8355 "Xenopus laevis" [GO:0003725 "double-stranded RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0043565
Gene3D:3.30.160.20 GO:GO:0006357 GO:GO:0006351 GO:GO:0044212
GO:GO:0048027 GO:GO:0030529 GO:GO:0003725 InterPro:IPR006561
Pfam:PF07528 SMART:SM00572 EMBL:U07155 EMBL:AY008299 PIR:I51652
UniGene:Xl.3647 IntAct:Q91550 Xenbase:XB-GENE-494371
HOVERGEN:HBG069915 Uniprot:Q91550
Length = 897
Score = 97 (39.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 35/103 (33%), Positives = 49/103 (47%)
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
L K NPV +L E K YE TG H++ F + V+ K +G G +KK+
Sbjct: 518 LTKHGKNPVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGVKFQGSGSNKKV 572
Query: 221 AKREAALNMLKFL---ETVPIEIPEKKQGEDVDEKGESNGLKH 260
AK AAL+ L+ L T+ E P+KK+ + G KH
Sbjct: 573 AKAYAALSALEKLFPDYTMYTEAPKKKRPPMMPRGGPKFAGKH 615
Score = 72 (30.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 78 PVSLMQELLSRRGTAP--KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
P +M L+ P +Y+LI G ++ P+F +S+ + + + A SG SKK AK
Sbjct: 400 PPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFT--MSVEVDDKTFEA--SGPSKKTAK 455
Query: 136 -HNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQ 171
H A K + D + E+ ++E + E PV Q
Sbjct: 456 LHVAVKVLQDMGLPTGMEE---KEEGTDESEQKPVVQ 489
>UNIPROTKB|Q2TAV5 [details] [associations]
symbol:ilf3 "CBTF122 protein" species:8355 "Xenopus laevis"
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005634
GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0006357 GO:GO:0044212
GO:GO:0003725 InterPro:IPR006561 Pfam:PF07528 SMART:SM00572
UniGene:Xl.3647 Xenbase:XB-GENE-494371 HOVERGEN:HBG069915 KO:K13090
EMBL:BC110711 RefSeq:NP_001083930.1 ProteinModelPortal:Q2TAV5
SMR:Q2TAV5 GeneID:399197 KEGG:xla:399197 CTD:399197 Uniprot:Q2TAV5
Length = 902
Score = 97 (39.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 35/103 (33%), Positives = 49/103 (47%)
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
L K NPV +L E K YE TG H++ F + V+ K +G G +KK+
Sbjct: 518 LTKHGKNPVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGVKFQGSGSNKKV 572
Query: 221 AKREAALNMLKFL---ETVPIEIPEKKQGEDVDEKGESNGLKH 260
AK AAL+ L+ L T+ E P+KK+ + G KH
Sbjct: 573 AKAYAALSALEKLFPDYTMYTEAPKKKRPPMMPRGGPKFAGKH 615
Score = 72 (30.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 78 PVSLMQELLSRRGTAP--KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
P +M L+ P +Y+LI G ++ P+F +S+ + + + A SG SKK AK
Sbjct: 400 PPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFT--MSVEVDDKTFEA--SGPSKKTAK 455
Query: 136 -HNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQ 171
H A K + D + E+ ++E + E PV Q
Sbjct: 456 LHVAVKVLQDMGLPTGMEE---KEEGTDESEQKPVVQ 489
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 111 (44.1 bits), Expect = 0.00061, P = 0.00061
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 164 VEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKR 223
+EPNP LQE + PP+Y +G H +F + V+ K GKSKK+ +
Sbjct: 148 IEPNPKSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVDGKKRRATGKSKKLGEE 207
Query: 224 EAALNMLKFLE 234
AA ML+ L+
Sbjct: 208 NAARMMLEELK 218
>UNIPROTKB|Q6GL57 [details] [associations]
symbol:ilf3 "Interleukin enhancer-binding factor 3"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003725
"double-stranded RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0043565 Gene3D:3.30.160.20 GO:GO:0006357 GO:GO:0006351
GO:GO:0044212 GO:GO:0048027 GO:GO:0030529 GO:GO:0003725
InterPro:IPR006561 Pfam:PF07528 SMART:SM00572 HOVERGEN:HBG069915
KO:K13090 CTD:3609 EMBL:BC074653 RefSeq:NP_001005648.1
UniGene:Str.47669 ProteinModelPortal:Q6GL57 SMR:Q6GL57 PRIDE:Q6GL57
GeneID:448121 KEGG:xtr:448121 Xenbase:XB-GENE-494367 Uniprot:Q6GL57
Length = 698
Score = 93 (37.8 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 35/103 (33%), Positives = 47/103 (45%)
Query: 161 LFKVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKI 220
L K NPV +L E K YE TG H++ F + V+ K +G G +KK+
Sbjct: 517 LTKHGKNPVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGVKFQGSGSNKKV 571
Query: 221 AKREAALNMLKFL---ETVPIEIPEKKQGEDVDEKGESNGLKH 260
AK AAL L+ L T E P+KK+ + G KH
Sbjct: 572 AKAYAALAALEKLFPDYTTYAEAPKKKRPPMMPRGGPKFAGKH 614
Score = 70 (29.7 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 78 PVSLMQELLSRRGTAP--KYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
P M L+ P +Y+LI G ++ PIF +S+ + + + A SG SKK AK
Sbjct: 400 PPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFT--MSVEVDEKTFEA--SGPSKKTAK 455
Query: 136 HNAAKSVLDQL 146
+ A VL +
Sbjct: 456 LHVAVKVLQDM 466
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.131 0.362 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 377 377 0.00089 117 3 11 23 0.46 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 70
No. of states in DFA: 599 (64 KB)
Total size of DFA: 213 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:09
No. of threads or processors used: 24
Search cpu time: 37.66u 0.08s 37.74t Elapsed: 00:00:33
Total cpu time: 37.68u 0.08s 37.76t Elapsed: 00:00:42
Start: Thu Aug 15 14:19:29 2013 End: Thu Aug 15 14:20:11 2013