RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5350
(377 letters)
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex
aeolicus [TaxId: 63363]}
Length = 68
Score = 66.5 bits (162), Expect = 7e-15
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
+ LQE R P Y G H++ F V A + Y+ G GKSKK A++ AA
Sbjct: 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAA 60
Query: 227 LNMLKFLE 234
++K LE
Sbjct: 61 EELIKLLE 68
Score = 52.7 bits (126), Expect = 6e-10
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 80 SLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+++QE+ +R P+Y LI +EG ++ F + Y +G GKSKKEA+ A
Sbjct: 4 TILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKE----YRTLGEGKSKKEAEQRA 59
Query: 139 AKSVLDQL 146
A+ ++ L
Sbjct: 60 AEELIKLL 67
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second
dsRBD {Xenopus laevis [TaxId: 8355]}
Length = 69
Score = 66.7 bits (162), Expect = 7e-15
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 168 PVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAAL 227
PVG LQE + + W P Y + +G PH+R FT+ V + E G G SK++AKR AA
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAE 61
Query: 228 NMLKFLET 235
+L +T
Sbjct: 62 KLLTKFKT 69
Score = 52.0 bits (124), Expect = 1e-09
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 78 PVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
PV +QEL ++G P+Y + Q G ++ F + + +V GSG SK+ AK
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVET----FVETGSGTSKQVAKR 57
Query: 137 NAAKSVLDQL 146
AA+ +L +
Sbjct: 58 VAAEKLLTKF 67
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 69
Score = 66.4 bits (162), Expect = 9e-15
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVN-VYKEEGMGKSKKIAKREA 225
+ LQE + PP Y T +R+F V VN G G++KK A++EA
Sbjct: 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEA 60
Query: 226 ALNMLKFL 233
A + L
Sbjct: 61 ARIAYEKL 68
Score = 59.1 bits (143), Expect = 4e-12
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 80 SLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+ +QE++ P+Y L++ E + IF + + + +A G G++KKEA+ A
Sbjct: 4 TALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRV---NGKTIATGKGRTKKEAEKEA 60
Query: 139 AKSVLDQLI 147
A+ ++L+
Sbjct: 61 ARIAYEKLL 69
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 71
Score = 61.8 bits (150), Expect = 4e-13
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
NPV L E P Y+ +G H + F + V+ EG G++KK+AK AA
Sbjct: 5 NPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAA 59
Query: 227 LNMLKFL 233
+ L +
Sbjct: 60 QSALATV 66
Score = 56.0 bits (135), Expect = 5e-11
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
+ PV ++ EL KY+ + G + F + + + GSG++KK
Sbjct: 2 SGKNPVMILNELRP----GLKYDFLSESGESHAKSFVMSVVVDGQ----FFEGSGRNKKL 53
Query: 134 AKHNAAKSVLDQLI 147
AK AA+S L +
Sbjct: 54 AKARAAQSALATVF 67
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 61.4 bits (149), Expect = 8e-13
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
N + +L + P Y+ +G H +FT+ V+ E G SKK AK A
Sbjct: 13 NALMRLNQ-----IRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVA 67
Query: 227 LNMLKFL 233
+ +L+ +
Sbjct: 68 VKVLQAM 74
Score = 49.9 bits (119), Expect = 8e-09
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 77 TPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKH 136
+ + ++ +Y+L+ G ++ P+F + + SG SKK AK
Sbjct: 13 NALMRLNQIRP----GLQYKLLSQSGPVHAPVFTMSVDVDGT----TYEASGPSKKTAKL 64
Query: 137 NAAKSVLDQL 146
+ A VL +
Sbjct: 65 HVAVKVLQAM 74
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 59.8 bits (144), Expect = 2e-12
Identities = 29/69 (42%), Positives = 38/69 (55%)
Query: 165 EPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKRE 224
E NPVG LQE + + W P Y + +G H + FT+ V + E G G SKK+AKR
Sbjct: 8 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRN 67
Query: 225 AALNMLKFL 233
AA ML +
Sbjct: 68 AAAKMLLRV 76
Score = 41.7 bits (97), Expect = 5e-06
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 72 NTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKS 130
+ PV +QEL+ ++G P+Y + Q G + F ++ IGSG S
Sbjct: 5 QQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC----RVERFIEIGSGTS 60
Query: 131 KKEAKHNAAKSVLDQL 146
KK AK NAA +L ++
Sbjct: 61 KKLAKRNAAAKMLLRV 76
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 76
Score = 59.6 bits (144), Expect = 2e-12
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
+P+ Q+ E + R ++ G H + F V EG G KK++K+ AA
Sbjct: 8 SPISQVHEIGIKRNMTVH-FKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAA 66
Query: 227 LNMLKFLE 234
ML L+
Sbjct: 67 EKMLVELQ 74
Score = 53.5 bits (128), Expect = 4e-10
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
++P+S + E+ +R +++++ EG + F V G G KK +
Sbjct: 6 KKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITAC----IVGSIVTEGEGNGKKVS 61
Query: 135 KHNAAKSVLDQL 146
K AA+ +L +L
Sbjct: 62 KKRAAEKMLVEL 73
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 73
Score = 58.4 bits (141), Expect = 7e-12
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
N + QL E P Y TG H +F + VN EG G +KK AK AA
Sbjct: 8 NALMQLNE-----IKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 62
Query: 227 LNMLKFLETVP 237
L+ P
Sbjct: 63 EKALRSFVQFP 73
Score = 49.1 bits (117), Expect = 1e-08
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 74 GDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKE 133
G P + + +L + +Y L+ G ++ P+F + + + V GSG +KK+
Sbjct: 2 GPVLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQ----VFEGSGPTKKK 56
Query: 134 AKHNAAKSVLDQLI 147
AK +AA+ L +
Sbjct: 57 AKLHAAEKALRSFV 70
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded
RNA-dependent protein kinase activator A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 57.8 bits (139), Expect = 1e-11
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
P+ L E M K P YE E + H FT V G G SKK+AK AA
Sbjct: 3 TPIQVLHEYGMKTKNIPV-YECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAA 61
Query: 227 LNMLKFLET 235
+ L+
Sbjct: 62 EAAINILKA 70
Score = 52.8 bits (126), Expect = 6e-10
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 76 RTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAK 135
+TP+ ++ E + P YE + + I+ P F +R+++ G G SKK AK
Sbjct: 2 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEGTSKKLAK 57
Query: 136 HNAAKSVLDQLIG 148
H AA++ ++ L
Sbjct: 58 HRAAEAAINILKA 70
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 58.0 bits (139), Expect = 1e-11
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
P+ +L + RK P Y G+P R F + V G G +KKIAK+ AA
Sbjct: 7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAA 66
Query: 227 LNMLKFL 233
ML L
Sbjct: 67 EAMLLQL 73
Score = 41.0 bits (95), Expect = 1e-05
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 73 TGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
+G P+S + ++ R P Y L+ G F ++ + + VA G+G +K
Sbjct: 3 SGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGN----EVATGTGPNK 58
Query: 132 KEAKHNAAKSVLDQL 146
K AK NAA+++L QL
Sbjct: 59 KIAKKNAAEAMLLQL 73
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 55.8 bits (134), Expect = 8e-11
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREA 225
+ +L + Y+ +G PH+R FT ++ + EG G+SKK AK A
Sbjct: 14 FFMEELNTYRQKQGVVLK-YQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAA 72
Query: 226 ALNMLKFLE 234
A ++ L
Sbjct: 73 AKLAVEILN 81
Score = 48.9 bits (116), Expect = 2e-08
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 72 NTGDRTP---VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
GD + + + ++G KY+ + G ++ F +++ + G G
Sbjct: 6 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVII---DGREFPEGEG 62
Query: 129 KSKKEAKHNAAKSVLDQL 146
+SKKEAK+ AAK ++ L
Sbjct: 63 RSKKEAKNAAAKLAVEIL 80
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 50.8 bits (121), Expect = 4e-09
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKE-EGMGKSKKIAKREA 225
+ V L E PVY E F ++ G SKK+AK +A
Sbjct: 10 SEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASSKKLAKNKA 67
Query: 226 ALNMLKFL 233
A L+ L
Sbjct: 68 ARATLEIL 75
Score = 48.9 bits (116), Expect = 2e-08
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 71 LNTGDRTPVSLMQELLSRRG-TAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGK 129
+N ++ V ++ E + R P Y + E F +++ + G+
Sbjct: 4 INPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVT---YGSGTAS 58
Query: 130 SKKEAKHNAAKSVLDQLIGRDDEK 153
SKK AK+ AA++ L+ LI ++
Sbjct: 59 SKKLAKNKAARATLEILIPDFVKQ 82
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 50.8 bits (121), Expect = 4e-09
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGM-GKSKKIAKREA 225
+ +L + Y+ T+G PH+R FT ++ + G+SK+ A+ A
Sbjct: 8 FYMDKLNKYRQMHGVAIT-YKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAA 66
Query: 226 ALNMLKFLE 234
A + L+
Sbjct: 67 AKLAVDILD 75
Score = 47.0 bits (111), Expect = 1e-07
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+ + + G A Y+ + G ++ F +++ G+SK+EA++ A
Sbjct: 10 MDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQV---LIDEKEFPEAKGRSKQEARNAA 66
Query: 139 AKSVLDQLIGR 149
AK +D L
Sbjct: 67 AKLAVDILDNE 77
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 50.8 bits (121), Expect = 8e-09
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEG------MGKSKKI 220
N +L + K Y+ + H R F + + + G +KK+
Sbjct: 27 NAKARLNQYFQKEKIQG-EYKYTQVGP-DHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 84
Query: 221 AKREAALNMLKFLE 234
A + AL++++ L
Sbjct: 85 AAQSCALSLVRQLY 98
Score = 44.6 bits (105), Expect = 1e-06
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFK--YRISLTSESRLYVAIGSGKSKKEAK 135
+ + + + +Y+ Q+ + F I + R A G +KK A
Sbjct: 28 AKARLNQYFQKEKIQGEYKYTQVGPD-HNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86
Query: 136 HNAAKSVLDQLI 147
+ A S++ QL
Sbjct: 87 QSCALSLVRQLY 98
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 48.2 bits (114), Expect = 6e-08
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 72 NTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSK 131
++G + + +R P YE I N+ K+ + E Y +G+ +K
Sbjct: 2 SSGSSGIKNFLYAWCGKRKMTPAYE---IRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNK 58
Query: 132 KEAKHNAAKSVLDQLI 147
K+A+ NAA+ ++ L+
Sbjct: 59 KDAQSNAARDFVNYLV 74
Score = 47.5 bits (112), Expect = 9e-08
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 171 QLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVY--KEEGMGKSKKIAKREAALN 228
L C RK P YE + + F V + G +KK A+ AA +
Sbjct: 11 FLYAWCGKRKMTPA-YEIRAVGN-KNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARD 68
Query: 229 MLKFL 233
+ +L
Sbjct: 69 FVNYL 73
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l
(2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 128
Score = 47.0 bits (111), Expect = 3e-07
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGMGKSKKIAKREAA 226
P L E C K P PVYET + T V Y+ KSKK+A++ AA
Sbjct: 27 TPKMCLLEWCRREKLPQPVYETVQRTI-DRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAA 85
Query: 227 LNMLKFLETVPIEIPEKKQGED 248
+ L+ +PE + GE+
Sbjct: 86 IVCLRSQ-----GLPEGRLGEE 102
Score = 42.0 bits (98), Expect = 1e-05
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 7/115 (6%)
Query: 69 MRLNTGDRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSG 128
R TP + E R ++ Y +
Sbjct: 19 RRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQK----YQSTLWD 74
Query: 129 KSKKEAKHNAAKSVLDQLIGRDDEKLMCQKENLFKVEPNPVGQLQEACMTRKWPP 183
KSKK A+ AA L + +E+ + Q+ R P
Sbjct: 75 KSKKLAEQTAAIVCLRSQGLPEGRL---GEESPSLNKRKREAPDQDPGGPRSGPS 126
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 43.7 bits (102), Expect = 2e-06
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 167 NPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYK-EEGMGKSKKIAKREA 225
N +G + ++ + G+ F + + G G +K+ AK+ A
Sbjct: 15 NYIGLINRIAQKKRLTVNYEQCAS--GVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLA 72
Query: 226 ALNMLKFLE 234
A +
Sbjct: 73 AKLAYLQIL 81
Score = 36.0 bits (82), Expect = 0.001
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 78 PVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHN 137
+ L+ + ++ YE G F Y+ + + +IG+G +K+EAK
Sbjct: 16 YIGLINRIAQKKRLTVNYEQCA-SGVHGPEGFHYKCKM---GQKEYSIGTGSTKQEAKQL 71
Query: 138 AAKSVLDQLIGRD 150
AAK Q++ +
Sbjct: 72 AAKLAYLQILSEE 84
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 76
Score = 42.7 bits (100), Expect = 3e-06
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 169 VGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYVNVYKEEGM-GKSKKIAKREAAL 227
+G + +K V + + F + G +K+ AK+ AA
Sbjct: 2 IGLVNSFAQKKKLS--VNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAK 59
Query: 228 NMLKFLE 234
+ L
Sbjct: 60 EAYQKLL 66
Score = 33.4 bits (76), Expect = 0.004
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 79 VSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEAKHNA 138
+ L+ ++ + F + + GSG +K+EAK A
Sbjct: 2 IGLVNSFAQKKKL-SVNYEQCEPNSELPQRFICKCKIGQTM---YGTGSGVTKQEAKQLA 57
Query: 139 AKSVLDQLIGR 149
AK +L+
Sbjct: 58 AKEAYQKLLKS 68
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 81
Score = 41.2 bits (96), Expect = 1e-05
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 163 KVEPNPVGQLQEACMTRKWPPPVYETEETTGLPHERMFTVCAYV-NVYKEEGMGKSKKIA 221
K++ N QL Y T + C G+G++ KIA
Sbjct: 3 KLDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIA 61
Query: 222 KREAALNMLK 231
AA N L+
Sbjct: 62 GIRAAENALR 71
Score = 38.9 bits (90), Expect = 6e-05
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 75 DRTPVSLMQELLSRRGTAPKYELIQIEGAINEPIFKYRISLTSESRLYVAIGSGKSKKEA 134
D + L+ Y ++ A++ + G G++ K A
Sbjct: 5 DMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGT---VLGTGVGRNIKIA 61
Query: 135 KHNAAKSVLDQL 146
AA++ L
Sbjct: 62 GIRAAENALRDK 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.362
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,327,574
Number of extensions: 62507
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 43
Length of query: 377
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,213,086
Effective search space: 351794940
Effective search space used: 351794940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.9 bits)