BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5351
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60554|NKX61_MESAU Homeobox protein Nkx-6.1 OS=Mesocricetus auratus GN=NKX6-1 PE=1
SV=1
Length = 364
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/45 (75%), Positives = 36/45 (80%), Gaps = 5/45 (11%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
V+VWFQNRRTKWRKKHAAEMATAK+KQD E SE EEEDD
Sbjct: 280 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEEDD 324
>sp|P78426|NKX61_HUMAN Homeobox protein Nkx-6.1 OS=Homo sapiens GN=NKX6-1 PE=2 SV=2
Length = 367
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/45 (75%), Positives = 36/45 (80%), Gaps = 5/45 (11%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
V+VWFQNRRTKWRKKHAAEMATAK+KQD E SE EEEDD
Sbjct: 280 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDD 324
>sp|O35762|NKX61_RAT Homeobox protein Nkx-6.1 OS=Rattus norvegicus GN=Nkx6-1 PE=2 SV=1
Length = 365
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/45 (73%), Positives = 36/45 (80%), Gaps = 5/45 (11%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
V+VWFQNRRTKWRKKHAAEMATAK+KQD E SE EE+DD
Sbjct: 281 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEDDD 325
>sp|Q99MA9|NKX61_MOUSE Homeobox protein Nkx-6.1 OS=Mus musculus GN=Nkx6-1 PE=1 SV=1
Length = 365
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/45 (73%), Positives = 36/45 (80%), Gaps = 5/45 (11%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
V+VWFQNRRTKWRKKHAAEMATAK+KQD E SE EE+DD
Sbjct: 281 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEDDD 325
>sp|Q9C056|NKX62_HUMAN Homeobox protein Nkx-6.2 OS=Homo sapiens GN=NKX6-2 PE=2 SV=2
Length = 277
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQD------QVEESEEEEEDDY 42
V+VWFQNRRTKWRK+HA EMA+AK+KQD +V S+ E++D+Y
Sbjct: 192 VKVWFQNRRTKWRKRHAVEMASAKKKQDSDAEKLKVGGSDAEDDDEY 238
>sp|Q3UHX8|NKX63_MOUSE Homeobox protein Nkx-6.3 OS=Mus musculus GN=Nkx6-3 PE=2 SV=1
Length = 262
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRK-------QDQVEESEEEEEDDYRHSDNAAKRLRR 54
V+VWFQNRRTKWRKK A E +++ + E+E++E + D+ +++R
Sbjct: 184 VKVWFQNRRTKWRKKSALEPSSSTPRAPGGASGDRAASENEDDEYNKPLDPDSDDEKIRL 243
Query: 55 ELAAH 59
L H
Sbjct: 244 LLRKH 248
>sp|A5YC49|NKX63_XENLA Homeobox protein Nkx-6.3 OS=Xenopus laevis GN=nkx6-3 PE=2 SV=1
Length = 254
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 2 VEVWFQNRRTKWRKKHAAEMA-----TAKRKQDQVEESEEEEE 39
V+VWFQNRRTKWRKK A E + + D + E++E
Sbjct: 177 VKVWFQNRRTKWRKKSAVETPGLPSLSTRAPGDLIPSDNEDDE 219
>sp|A6NJ46|NKX63_HUMAN Homeobox protein Nkx-6.3 OS=Homo sapiens GN=NKX6-3 PE=2 SV=1
Length = 265
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA--------KRKQDQVEESEEEEEDDYRH---SDNAAK 50
V+VWFQNRRTKWRKK A E +++ E E+D+Y D+ +
Sbjct: 183 VKVWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNKPLDPDSDDE 242
Query: 51 RLRRELAAH 59
++R L H
Sbjct: 243 KIRLLLRKH 251
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ E+++ K
Sbjct: 166 VQVWFQNRRAKWRRQEKLEVSSMK 189
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ E+++ K
Sbjct: 180 VQVWFQNRRAKWRRQEKLEVSSMK 203
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ E+++ K
Sbjct: 181 VQVWFQNRRAKWRRQEKLEVSSMK 204
>sp|Q9PTU1|DBX1A_DANRE Homeobox protein DBX1-A OS=Danio rerio GN=dbx1a PE=2 SV=1
Length = 314
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 16/56 (28%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQV----------------EESEEEEEDD 41
V++WFQNRR KWR E+ ++ ++Q + SE+E+EDD
Sbjct: 219 VKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKTNPHPDLSDVGKKSSEDEDEDD 274
>sp|Q9VEI9|HMX_DROME Homeobox protein Hmx OS=Drosophila melanogaster GN=Hmx PE=2 SV=3
Length = 592
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 2 VEVWFQNRRTKWRKKHAAEM 21
V++WFQNRR KW+++ AAE+
Sbjct: 512 VKIWFQNRRNKWKRQLAAEL 531
>sp|P97830|UNC4_RAT Homeobox protein unc-4 homolog OS=Rattus norvegicus GN=Uncx PE=2
SV=1
Length = 530
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 2 VEVWFQNRRTKWRKK 16
V+VWFQNRR KWRKK
Sbjct: 153 VQVWFQNRRAKWRKK 167
>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2
Length = 530
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 2 VEVWFQNRRTKWRKK 16
V+VWFQNRR KWRKK
Sbjct: 153 VQVWFQNRRAKWRKK 167
>sp|A6NJT0|UNC4_HUMAN Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=2 SV=1
Length = 531
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 2 VEVWFQNRRTKWRKK 16
V+VWFQNRR KWRKK
Sbjct: 149 VQVWFQNRRAKWRKK 163
>sp|P29506|UNC4_CAEEL Homeobox protein unc-4 OS=Caenorhabditis elegans GN=unc-4 PE=1 SV=2
Length = 252
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEESE 35
V+VWFQNRR KWRK+ +++ K+D E+ E
Sbjct: 132 VQVWFQNRRAKWRKREQNRNGSSEIKKDDGEQME 165
>sp|Q8AWZ0|HXB8A_DANRE Homeobox protein Hox-B8a OS=Danio rerio GN=hoxb8a PE=2 SV=1
Length = 245
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 2 VEVWFQNRRTKWRKKHAAE-MATAKRKQDQVEESEEEEE 39
V++WFQNRR KW+K++ + ++K +Q+Q+E+ + E+E
Sbjct: 189 VKIWFQNRRMKWKKENNKDKFPSSKSEQEQIEKEKREKE 227
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ E+++ K
Sbjct: 180 VQVWFQNRRAKWRRQEKLEVSSMK 203
>sp|O93367|TLX3_CHICK T-cell leukemia homeobox protein 3 OS=Gallus gallus GN=TLX3 PE=2
SV=1
Length = 297
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQ 28
V+ WFQNRRTKWR++ AE A+R+Q
Sbjct: 216 VKTWFQNRRTKWRRQ-TAEEREAERQQ 241
>sp|P19601|SAX1_CHICK Homeobox protein SAX-1 (Fragment) OS=Gallus gallus GN=SAX1 PE=2
SV=2
Length = 232
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 16/16 (100%)
Query: 2 VEVWFQNRRTKWRKKH 17
V++WFQNRRTKW+K+H
Sbjct: 109 VKIWFQNRRTKWKKQH 124
>sp|P31314|TLX1_HUMAN T-cell leukemia homeobox protein 1 OS=Homo sapiens GN=TLX1 PE=1
SV=1
Length = 330
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEESEEEE 38
V+ WFQNRRTKWR++ A E +++ +++ ++E
Sbjct: 245 VKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQE 281
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQV 31
V+VWFQNRR KWR++ E+++ K ++ +
Sbjct: 150 VQVWFQNRRAKWRRQEKLEVSSIKLQESSM 179
>sp|O70218|HMX1_MOUSE Homeobox protein HMX1 OS=Mus musculus GN=Hmx1 PE=2 SV=1
Length = 332
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
V++WFQNRR KW+++ AAE+ A
Sbjct: 235 VKIWFQNRRNKWKRQLAAELEAA 257
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 2 VEVWFQNRRTKWRKKHAAEMAT 23
V+VWFQNRR KWRK+ A T
Sbjct: 372 VQVWFQNRRAKWRKREKAGAQT 393
>sp|P43345|TLX1_MOUSE T-cell leukemia homeobox protein 1 OS=Mus musculus GN=Tlx1 PE=1
SV=1
Length = 332
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQV 31
V+ WFQNRRTKWR++ A E + +++
Sbjct: 247 VKTWFQNRRTKWRRQTAEEREAESEQANRI 276
>sp|P53547|HM01_CAEEL Homeobox protein ceh-1 (Fragment) OS=Caenorhabditis elegans
GN=ceh-1 PE=4 SV=1
Length = 132
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEESEEEE 38
V++WFQNRRTKW+K + + A + +E++ +
Sbjct: 45 VKIWFQNRRTKWKKHNPGQDANTPQTPPSSDETQIQP 81
>sp|Q8JJ64|HMX3_XENLA Homeobox protein HMX3 OS=Xenopus laevis GN=hmx3 PE=1 SV=1
Length = 306
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
V++WFQNRR KW+++ AAE+ A
Sbjct: 222 VKIWFQNRRNKWKRQLAAELEAA 244
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ E+ + K
Sbjct: 174 VQVWFQNRRAKWRRQEKLEVTSMK 197
>sp|Q9QZW9|MNX1_MOUSE Motor neuron and pancreas homeobox protein 1 OS=Mus musculus
GN=Mnx1 PE=2 SV=2
Length = 404
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQV------------EESEEEEEDDYRHSDNAA 49
V++WFQNRR KW++ A+ A+ + Q E++EEE D A+
Sbjct: 285 VKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGTGKGGSEEKTEEELMGPPVSGDKAS 344
Query: 50 KRLRREL 56
R R+L
Sbjct: 345 GRRLRDL 351
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ + +T K
Sbjct: 181 VQVWFQNRRAKWRRQEKMDTSTMK 204
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 2 VEVWFQNRRTKWRKKHAAEMAT 23
V+VWFQNRR KWRK+ A T
Sbjct: 376 VQVWFQNRRAKWRKREKAGAQT 397
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ E+ + K
Sbjct: 174 VQVWFQNRRAKWRRQEKLEVTSMK 197
>sp|Q90XN9|HMX3B_ORYLA Homeobox protein HMX3-B OS=Oryzias latipes GN=hmx3b PE=2 SV=1
Length = 290
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
V++WFQNRR KW+++ AAE+ A
Sbjct: 210 VKIWFQNRRNKWKRQLAAELEAA 232
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ + +T K
Sbjct: 181 VQVWFQNRRAKWRRQEKIDASTMK 204
>sp|O57601|HMX3_CHICK Homeobox protein HMX3 OS=Gallus gallus GN=HMX3 PE=2 SV=1
Length = 308
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
V++WFQNRR KW+++ AAE+ A
Sbjct: 225 VKIWFQNRRNKWKRQLAAELEAA 247
>sp|Q9NP08|HMX1_HUMAN Homeobox protein HMX1 OS=Homo sapiens GN=HMX1 PE=2 SV=2
Length = 348
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
V++WFQNRR KW+++ AAE+ A
Sbjct: 247 VKIWFQNRRNKWKRQLAAELEAA 269
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 2 VEVWFQNRRTKWRKKHAAE 20
V+VWFQNRR KWR++ +E
Sbjct: 572 VQVWFQNRRAKWRRQEKSE 590
>sp|Q26656|HMX_STRPU Homeobox protein Hmx (Fragment) OS=Strongylocentrotus purpuratus
GN=HMX PE=2 SV=1
Length = 405
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
V++WFQNRR KW+++ AAE+ +A
Sbjct: 297 VKIWFQNRRNKWKRQMAAELESA 319
>sp|O43711|TLX3_HUMAN T-cell leukemia homeobox protein 3 OS=Homo sapiens GN=TLX3 PE=1
SV=3
Length = 291
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQ 28
V+ WFQNRRTKWR++ AE A+R+Q
Sbjct: 210 VKTWFQNRRTKWRRQ-TAEEREAERQQ 235
>sp|P31268|HXA7_HUMAN Homeobox protein Hox-A7 OS=Homo sapiens GN=HOXA7 PE=2 SV=3
Length = 230
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
+++WFQNRR KW+K+H E TA
Sbjct: 174 IKIWFQNRRMKWKKEHKDEGPTA 196
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ + T K
Sbjct: 179 VQVWFQNRRAKWRRQEKMDTGTMK 202
>sp|Q91770|NOT2_XENLA Homeobox protein not2 OS=Xenopus laevis GN=not2 PE=2 SV=1
Length = 233
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQ 28
V+VWFQNRR KWRK+ + E AK Q
Sbjct: 179 VKVWFQNRRIKWRKQ-SLEQKKAKLSQ 204
>sp|Q9DE09|HMX1_CHICK Homeobox protein HMX1 OS=Gallus gallus GN=HMX1 PE=2 SV=1
Length = 333
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
V++WFQNRR KW+++ AA++ A
Sbjct: 245 VKIWFQNRRNKWKRQLAADLEAA 267
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAK 25
V+VWFQNRR KWR++ E ++ K
Sbjct: 80 VQVWFQNRRAKWRRQEKMEASSMK 103
>sp|P81062|PITX3_RAT Pituitary homeobox 3 OS=Rattus norvegicus GN=Pitx3 PE=1 SV=2
Length = 302
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 2 VEVWFQNRRTKWRKKHAAEMA 22
V VWF+NRR KWRK+ ++ A
Sbjct: 106 VRVWFKNRRAKWRKRERSQQA 126
>sp|O35160|PITX3_MOUSE Pituitary homeobox 3 OS=Mus musculus GN=Pitx3 PE=1 SV=1
Length = 302
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 2 VEVWFQNRRTKWRKKHAAEMA 22
V VWF+NRR KWRK+ ++ A
Sbjct: 106 VRVWFKNRRAKWRKRERSQQA 126
>sp|Q0P4W6|HMX3_XENTR Homeobox protein HMX3 OS=Xenopus tropicalis GN=hmx3 PE=2 SV=1
Length = 306
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
V++WFQNRR KW+++ AAE+ A
Sbjct: 222 VKIWFQNRRNKWKRQLAAELEAA 244
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 2 VEVWFQNRRTKWRKKHAAEMAT 23
V+VWFQNRR KWRK+ A T
Sbjct: 374 VQVWFQNRRAKWRKREKAGAQT 395
>sp|Q9PWD4|HXA7_MORSA Homeobox protein Hox-A7 OS=Morone saxatilis GN=hoxa7 PE=3 SV=1
Length = 225
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEESEEEEEDDYRHSDNAAKRL 52
+++WFQNRR KW+K H E + + + E ++ + +N +R
Sbjct: 170 IKIWFQNRRMKWKKDHKEEPVSTPSGEKDCDIQPVSEAEEPKAVNNPERRF 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.122 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,719,381
Number of Sequences: 539616
Number of extensions: 750872
Number of successful extensions: 14732
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 13842
Number of HSP's gapped (non-prelim): 870
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)