Query psy5351
Match_columns 65
No_of_seqs 105 out of 426
Neff 6.0
Searched_HMMs 46136
Date Sat Aug 17 00:22:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0847|consensus 99.4 8.5E-14 1.8E-18 96.4 2.0 59 2-60 211-278 (288)
2 KOG0489|consensus 99.3 3.6E-13 7.8E-18 93.1 0.1 22 2-23 203-224 (261)
3 KOG0487|consensus 99.1 1.1E-11 2.5E-16 88.1 1.2 18 2-19 279-296 (308)
4 KOG0484|consensus 99.1 2.2E-11 4.8E-16 76.3 1.9 24 2-25 61-84 (125)
5 KOG0488|consensus 99.1 1.8E-11 3.9E-16 86.9 0.5 21 2-22 216-236 (309)
6 KOG0843|consensus 98.9 3.2E-10 6.8E-15 76.3 1.5 19 2-20 146-164 (197)
7 KOG4577|consensus 98.9 3.1E-10 6.8E-15 81.2 1.5 21 1-21 210-230 (383)
8 KOG0850|consensus 98.9 2.7E-10 5.9E-15 78.8 1.0 17 2-18 166-182 (245)
9 KOG0492|consensus 98.9 4.7E-10 1E-14 77.1 1.8 25 2-26 188-212 (246)
10 KOG0842|consensus 98.9 4.6E-10 9.9E-15 80.0 1.4 29 2-30 197-225 (307)
11 KOG0848|consensus 98.9 7.6E-10 1.6E-14 78.3 1.7 20 2-21 243-262 (317)
12 KOG0485|consensus 98.8 1.6E-09 3.5E-14 75.1 1.2 23 2-24 148-170 (268)
13 KOG0494|consensus 98.8 1.1E-09 2.4E-14 77.4 0.3 18 2-19 185-202 (332)
14 KOG0491|consensus 98.8 1.3E-09 2.8E-14 72.9 -0.2 18 2-19 144-161 (194)
15 KOG0844|consensus 98.7 4.9E-09 1.1E-13 75.7 0.5 17 2-18 225-241 (408)
16 KOG0483|consensus 98.5 1.2E-08 2.5E-13 69.0 -1.3 17 2-18 94-110 (198)
17 KOG2251|consensus 98.5 4.2E-08 9.1E-13 67.5 1.1 20 1-20 80-99 (228)
18 COG5576 Homeodomain-containing 98.5 3.7E-08 8.1E-13 64.4 0.6 22 2-23 95-116 (156)
19 KOG0490|consensus 98.3 1.2E-07 2.5E-12 62.4 0.4 18 1-18 103-120 (235)
20 KOG0493|consensus 98.0 1.5E-06 3.3E-11 61.8 -0.0 22 2-23 290-311 (342)
21 KOG0486|consensus 97.6 1.8E-05 3.8E-10 57.3 0.7 20 2-21 156-175 (351)
22 KOG0849|consensus 96.8 0.0002 4.4E-09 51.7 -0.7 17 2-18 220-236 (354)
23 KOG3802|consensus 96.8 0.00024 5.1E-09 52.5 -0.4 18 1-18 337-354 (398)
24 KOG0490|consensus 95.9 0.0029 6.4E-08 41.4 0.6 18 1-18 196-213 (235)
25 KOG1168|consensus 95.5 0.0057 1.2E-07 44.5 1.1 19 1-19 352-370 (385)
26 KOG0775|consensus 89.4 0.11 2.3E-06 37.4 -0.0 13 2-14 218-232 (304)
27 KOG1146|consensus 88.1 0.14 3E-06 43.0 -0.1 18 1-18 946-963 (1406)
28 KOG3623|consensus 78.4 0.39 8.5E-06 38.8 -1.3 19 1-19 599-617 (1007)
29 KOG3755|consensus 67.4 1.6 3.4E-05 34.7 -0.3 16 2-17 743-758 (769)
30 cd06406 PB1_P67 A PB1 domain i 47.5 6 0.00013 23.4 -0.1 8 1-8 4-11 (80)
31 PF11516 DUF3220: Protein of u 43.1 3.2 7E-05 25.2 -1.7 9 2-10 33-41 (106)
32 PTZ00352 60S ribosomal protein 31.2 48 0.001 23.0 2.3 18 2-19 20-38 (212)
33 PTZ00192 60S ribosomal protein 28.6 60 0.0013 22.6 2.4 18 2-19 27-45 (218)
34 KOG4752|consensus 25.9 36 0.00077 15.9 0.7 7 10-16 2-8 (26)
35 PF06505 XylR_N: Activator of 23.6 25 0.00055 21.4 -0.1 9 3-11 14-22 (103)
36 COG0030 KsgA Dimethyladenosine 22.5 22 0.00047 25.1 -0.6 18 1-18 202-219 (259)
37 PF08452 DNAP_B_exo_N: DNA pol 22.1 26 0.00056 16.0 -0.2 6 5-10 8-13 (22)
38 PF12794 MscS_TM: Mechanosensi 21.5 1.8E+02 0.0039 20.8 3.9 11 9-19 261-271 (340)
39 PF05703 Auxin_canalis: Auxin 21.0 44 0.00095 23.5 0.7 21 2-22 103-123 (242)
40 KOG4580|consensus 20.7 43 0.00094 21.0 0.5 10 3-12 11-20 (112)
41 COG5264 VTC1 Vacuolar transpor 20.1 45 0.00098 21.4 0.5 10 3-12 26-35 (126)
No 1
>KOG0847|consensus
Probab=99.40 E-value=8.5e-14 Score=96.43 Aligned_cols=59 Identities=54% Similarity=0.877 Sum_probs=47.7
Q ss_pred ceeecCchhHHHHHHHHhhHHHhhhhccccC------CCCCccccccc---CCchHHHHHhHHhhhcc
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVE------ESEEEEEDDYR---HSDNAAKRLRRELAAHC 60 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~~~~~~~~~~~------~~~~~~d~~~~---~s~~~~~~~r~e~~~~~ 60 (65)
|+|||||||.||||....+..+++..+++.. ..++++||||+ +++++.++++..|.+|-
T Consensus 211 vkVWFQNRRTKWRKkhAaEmasakkkqds~ae~~~gg~~~eeeDDeYNkPLDPnSDDEKIt~LLkKHk 278 (288)
T KOG0847|consen 211 VKVWFQNRRTKWRKKHAAEMASAKKKQDSGAERGAGGAPSEEEDDEYNKPLDPNSDDEKITLLLKKHK 278 (288)
T ss_pred HHHHHhcchhhhhhhhccchhhccccCCCcccccccCCCccccccccCCCCCCCcchHHHHHHHHhcc
Confidence 8999999999999999988888876555543 45667888888 56888889999887763
No 2
>KOG0489|consensus
Probab=99.30 E-value=3.6e-13 Score=93.14 Aligned_cols=22 Identities=45% Similarity=1.097 Sum_probs=19.2
Q ss_pred ceeecCchhHHHHHHHHhhHHH
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMAT 23 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~~ 23 (65)
||||||||||||||..+.....
T Consensus 203 IKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 203 IKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 8999999999999999865544
No 3
>KOG0487|consensus
Probab=99.14 E-value=1.1e-11 Score=88.13 Aligned_cols=18 Identities=50% Similarity=0.887 Sum_probs=16.7
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|||||||||||.||..+.
T Consensus 279 VKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 279 VKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred eeeeehhhhhHHhhhhhh
Confidence 999999999999999874
No 4
>KOG0484|consensus
Probab=99.12 E-value=2.2e-11 Score=76.32 Aligned_cols=24 Identities=54% Similarity=0.951 Sum_probs=20.6
Q ss_pred ceeecCchhHHHHHHHHhhHHHhh
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMATAK 25 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~~~~ 25 (65)
|||||||||||+|||++.....+.
T Consensus 61 VQVWFQNRRAKfRKQEr~a~~~~~ 84 (125)
T KOG0484|consen 61 VQVWFQNRRAKFRKQERAAIAKMA 84 (125)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhh
Confidence 899999999999999997655544
No 5
>KOG0488|consensus
Probab=99.09 E-value=1.8e-11 Score=86.87 Aligned_cols=21 Identities=52% Similarity=1.051 Sum_probs=18.1
Q ss_pred ceeecCchhHHHHHHHHhhHH
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMA 22 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~ 22 (65)
||+|||||||||||+...+..
T Consensus 216 VKtWfQNRRtKWKrq~a~g~~ 236 (309)
T KOG0488|consen 216 VKTWFQNRRTKWKRQTAEGGE 236 (309)
T ss_pred HHHHHhhhhHHHHHHHHhhhc
Confidence 899999999999999886333
No 6
>KOG0843|consensus
Probab=98.93 E-value=3.2e-10 Score=76.31 Aligned_cols=19 Identities=53% Similarity=1.011 Sum_probs=17.2
Q ss_pred ceeecCchhHHHHHHHHhh
Q psy5351 2 VEVWFQNRRTKWRKKHAAE 20 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~ 20 (65)
|||||||||.|+||.+...
T Consensus 146 VkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 146 VKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred hhhhhhhhhHHHHHHHHHh
Confidence 8999999999999988764
No 7
>KOG4577|consensus
Probab=98.93 E-value=3.1e-10 Score=81.24 Aligned_cols=21 Identities=43% Similarity=0.737 Sum_probs=18.8
Q ss_pred CceeecCchhHHHHHHHHhhH
Q psy5351 1 MVEVWFQNRRTKWRKKHAAEM 21 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k~~~ 21 (65)
||||||||||||.||+.|...
T Consensus 210 VVQVWFQNRRAKEKRLKKDAG 230 (383)
T KOG4577|consen 210 VVQVWFQNRRAKEKRLKKDAG 230 (383)
T ss_pred ehhhhhhhhhHHHHhhhhhcc
Confidence 899999999999999998533
No 8
>KOG0850|consensus
Probab=98.93 E-value=2.7e-10 Score=78.80 Aligned_cols=17 Identities=53% Similarity=1.118 Sum_probs=16.6
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|||||||||.|+||+.+
T Consensus 166 VKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 166 VKIWFQNRRSKFKKLKK 182 (245)
T ss_pred hhhhhhhhHHHHHHHHh
Confidence 89999999999999998
No 9
>KOG0492|consensus
Probab=98.91 E-value=4.7e-10 Score=77.13 Aligned_cols=25 Identities=44% Similarity=0.783 Sum_probs=22.2
Q ss_pred ceeecCchhHHHHHHHHhhHHHhhh
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMATAKR 26 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~~~~~ 26 (65)
|||||||||+|-||++..+..+.+-
T Consensus 188 VKIWFQNRRAKaKRlQeae~Ek~km 212 (246)
T KOG0492|consen 188 VKIWFQNRRAKAKRLQEAELEKLKM 212 (246)
T ss_pred eehhhhhhhHHHHHHHHHHHHHhhh
Confidence 8999999999999999987777663
No 10
>KOG0842|consensus
Probab=98.90 E-value=4.6e-10 Score=79.99 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=23.1
Q ss_pred ceeecCchhHHHHHHHHhhHHHhhhhccc
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQ 30 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~~~~~~~~~ 30 (65)
|||||||||.|-||+++............
T Consensus 197 VKIWFQNrRYK~KR~~~dk~~~~~~~~~~ 225 (307)
T KOG0842|consen 197 VKIWFQNRRYKTKRQQKDKALEALLLASS 225 (307)
T ss_pred eeeeeecchhhhhhhhhhhhhhcccCCCC
Confidence 99999999999999999766665544443
No 11
>KOG0848|consensus
Probab=98.87 E-value=7.6e-10 Score=78.34 Aligned_cols=20 Identities=50% Similarity=0.876 Sum_probs=18.3
Q ss_pred ceeecCchhHHHHHHHHhhH
Q psy5351 2 VEVWFQNRRTKWRKKHAAEM 21 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~ 21 (65)
|||||||||||.||+.|...
T Consensus 243 VKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 243 VKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred hhHhhhhhhHHHHHHHHHHH
Confidence 89999999999999998764
No 12
>KOG0485|consensus
Probab=98.79 E-value=1.6e-09 Score=75.05 Aligned_cols=23 Identities=52% Similarity=1.168 Sum_probs=19.3
Q ss_pred ceeecCchhHHHHHHHHhhHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMATA 24 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~~~ 24 (65)
|||||||||-||||+-.......
T Consensus 148 VKIWFQNRRnKwKRq~aad~ea~ 170 (268)
T KOG0485|consen 148 VKIWFQNRRNKWKRQYAADLEAA 170 (268)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhh
Confidence 89999999999999987655443
No 13
>KOG0494|consensus
Probab=98.79 E-value=1.1e-09 Score=77.44 Aligned_cols=18 Identities=61% Similarity=1.307 Sum_probs=16.6
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
||||||||||||||.++.
T Consensus 185 IqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 185 IQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred hhHHhhhhhHHhhhhhhh
Confidence 799999999999999884
No 14
>KOG0491|consensus
Probab=98.76 E-value=1.3e-09 Score=72.85 Aligned_cols=18 Identities=50% Similarity=0.948 Sum_probs=16.8
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
||+||||||||+||+.+.
T Consensus 144 VKTWFQNrRMK~Kk~~r~ 161 (194)
T KOG0491|consen 144 VKTWFQNRRMKHKKQQRN 161 (194)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 899999999999999884
No 15
>KOG0844|consensus
Probab=98.67 E-value=4.9e-09 Score=75.67 Aligned_cols=17 Identities=47% Similarity=0.950 Sum_probs=15.7
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|||||||||||-|||.-
T Consensus 225 IKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 225 IKVWFQNRRMKDKRQRL 241 (408)
T ss_pred eehhhhhchhhhhhhhh
Confidence 89999999999999864
No 16
>KOG0483|consensus
Probab=98.50 E-value=1.2e-08 Score=69.04 Aligned_cols=17 Identities=59% Similarity=1.320 Sum_probs=15.1
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+||||||||+||..+-
T Consensus 94 VavWFQNRRARwK~kql 110 (198)
T KOG0483|consen 94 VAVWFQNRRARWKTKQL 110 (198)
T ss_pred HHHHHhhccccccchhh
Confidence 88999999999998654
No 17
>KOG2251|consensus
Probab=98.48 E-value=4.2e-08 Score=67.55 Aligned_cols=20 Identities=45% Similarity=0.948 Sum_probs=18.2
Q ss_pred CceeecCchhHHHHHHHHhh
Q psy5351 1 MVEVWFQNRRTKWRKKHAAE 20 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k~~ 20 (65)
.|||||.|||+|+|++++..
T Consensus 80 rVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 80 RVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred hhhhhhccccchhhHhhhhh
Confidence 49999999999999999864
No 18
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=98.47 E-value=3.7e-08 Score=64.41 Aligned_cols=22 Identities=41% Similarity=0.862 Sum_probs=18.7
Q ss_pred ceeecCchhHHHHHHHHhhHHH
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMAT 23 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~~ 23 (65)
|||||||||++.|+....+...
T Consensus 95 VqIWFQNkR~~~k~~~~~~~~~ 116 (156)
T COG5576 95 VQIWFQNKRAKEKKKRSGKVEQ 116 (156)
T ss_pred hhhhhchHHHHHHHhcccchhc
Confidence 8999999999999998764444
No 19
>KOG0490|consensus
Probab=98.33 E-value=1.2e-07 Score=62.39 Aligned_cols=18 Identities=61% Similarity=0.951 Sum_probs=16.5
Q ss_pred CceeecCchhHHHHHHHH
Q psy5351 1 MVEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k 18 (65)
.|||||||||+||+++.+
T Consensus 103 rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 103 RVQVWFQNRRAKDRKEER 120 (235)
T ss_pred eeehhhhhhcHhhhhhhc
Confidence 389999999999999986
No 20
>KOG0493|consensus
Probab=97.97 E-value=1.5e-06 Score=61.84 Aligned_cols=22 Identities=32% Similarity=0.741 Sum_probs=17.6
Q ss_pred ceeecCchhHHHHHHHHhhHHH
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMAT 23 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~~ 23 (65)
|||||||.|+|+||-.-..+..
T Consensus 290 IKIWFQNKRAKiKKsTgskn~l 311 (342)
T KOG0493|consen 290 IKIWFQNKRAKIKKSTGSKNRL 311 (342)
T ss_pred hhHHhhhhhhhhhhccCCCCch
Confidence 7999999999999976544333
No 21
>KOG0486|consensus
Probab=97.61 E-value=1.8e-05 Score=57.29 Aligned_cols=20 Identities=55% Similarity=1.197 Sum_probs=17.7
Q ss_pred ceeecCchhHHHHHHHHhhH
Q psy5351 2 VEVWFQNRRTKWRKKHAAEM 21 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~ 21 (65)
|.|||.|||+||||.++-..
T Consensus 156 vrvwfknrrakwrkrErN~~ 175 (351)
T KOG0486|consen 156 VRVWFKNRRAKWRKRERNQQ 175 (351)
T ss_pred hhhhcccchhhhhhhhhhHH
Confidence 78999999999999988655
No 22
>KOG0849|consensus
Probab=96.84 E-value=0.0002 Score=51.73 Aligned_cols=17 Identities=71% Similarity=1.525 Sum_probs=15.8
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+|||+|||+||+|+..
T Consensus 220 iqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 220 VQVWFQNRRAKWRRQHR 236 (354)
T ss_pred HHHHHhhhhhhhhhccc
Confidence 78999999999999984
No 23
>KOG3802|consensus
Probab=96.83 E-value=0.00024 Score=52.50 Aligned_cols=18 Identities=44% Similarity=0.796 Sum_probs=16.9
Q ss_pred CceeecCchhHHHHHHHH
Q psy5351 1 MVEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k 18 (65)
||.|||=|||-|.||...
T Consensus 337 VVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 337 VVRVWFCNRRQKEKRITP 354 (398)
T ss_pred eEEEEeeccccccccCCC
Confidence 899999999999999876
No 24
>KOG0490|consensus
Probab=95.88 E-value=0.0029 Score=41.44 Aligned_cols=18 Identities=56% Similarity=1.082 Sum_probs=16.1
Q ss_pred CceeecCchhHHHHHHHH
Q psy5351 1 MVEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k 18 (65)
||+|||||+|++.++...
T Consensus 196 ~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 196 VIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred hhhhhcccHHHHHHhhcc
Confidence 589999999999999765
No 25
>KOG1168|consensus
Probab=95.54 E-value=0.0057 Score=44.47 Aligned_cols=19 Identities=37% Similarity=0.758 Sum_probs=16.8
Q ss_pred CceeecCchhHHHHHHHHh
Q psy5351 1 MVEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k~ 19 (65)
||.|||=|.|.|+||....
T Consensus 352 VVRVWFCNQRQKQKRm~~S 370 (385)
T KOG1168|consen 352 VVRVWFCNQRQKQKRMKRS 370 (385)
T ss_pred eEEEEeeccHHHHHHhhhh
Confidence 7999999999999997653
No 26
>KOG0775|consensus
Probab=89.37 E-value=0.11 Score=37.39 Aligned_cols=13 Identities=54% Similarity=1.107 Sum_probs=10.5
Q ss_pred cee--ecCchhHHHH
Q psy5351 2 VEV--WFQNRRTKWR 14 (65)
Q Consensus 2 VKv--WFQNRR~K~k 14 (65)
+|| ||.|||..-|
T Consensus 218 tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 218 TQVSNWFKNRRQRDR 232 (304)
T ss_pred hhhhhhhhhhhhhhh
Confidence 455 9999998777
No 27
>KOG1146|consensus
Probab=88.14 E-value=0.14 Score=43.02 Aligned_cols=18 Identities=44% Similarity=0.870 Sum_probs=16.5
Q ss_pred CceeecCchhHHHHHHHH
Q psy5351 1 MVEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k 18 (65)
||+|||||=|.|-+|+..
T Consensus 946 ~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 946 VIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhHHhhhhhhhhhhhhhh
Confidence 799999999999999866
No 28
>KOG3623|consensus
Probab=78.37 E-value=0.39 Score=38.82 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=16.6
Q ss_pred CceeecCchhHHHHHHHHh
Q psy5351 1 MVEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k~ 19 (65)
|||+||++++++...-++.
T Consensus 599 vvk~wfE~~~a~e~sv~rs 617 (1007)
T KOG3623|consen 599 VVKAWFEDEEAEEMSVERS 617 (1007)
T ss_pred HHHHHHHhhhhhhhhhccC
Confidence 7999999999999887763
No 29
>KOG3755|consensus
Probab=67.38 E-value=1.6 Score=34.73 Aligned_cols=16 Identities=31% Similarity=0.746 Sum_probs=14.2
Q ss_pred ceeecCchhHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKH 17 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~ 17 (65)
|+.||.|||++.++..
T Consensus 743 ~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 743 VQFWFKVRREEEKRLK 758 (769)
T ss_pred hHHHHHHHHHHHhhhh
Confidence 6889999999999874
No 30
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=47.54 E-value=6 Score=23.41 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=5.4
Q ss_pred CceeecCc
Q psy5351 1 MVEVWFQN 8 (65)
Q Consensus 1 vVKvWFQN 8 (65)
||||||+-
T Consensus 4 vvKV~f~~ 11 (80)
T cd06406 4 VVKVHFKY 11 (80)
T ss_pred EEEEEEEE
Confidence 57777764
No 31
>PF11516 DUF3220: Protein of unknown function (DUF3120); InterPro: IPR021597 This family of proteins with unknown function appears to be restricted to Bordetella. ; PDB: 2JPF_A.
Probab=43.14 E-value=3.2 Score=25.16 Aligned_cols=9 Identities=56% Similarity=1.055 Sum_probs=7.4
Q ss_pred ceeecCchh
Q psy5351 2 VEVWFQNRR 10 (65)
Q Consensus 2 VKvWFQNRR 10 (65)
||||.||--
T Consensus 33 vkvwmqnle 41 (106)
T PF11516_consen 33 VKVWMQNLE 41 (106)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 789999963
No 32
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=31.24 E-value=48 Score=23.00 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=10.6
Q ss_pred ceeec-CchhHHHHHHHHh
Q psy5351 2 VEVWF-QNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWF-QNRR~K~kK~~k~ 19 (65)
|++|| |.=|-+.|++.+.
T Consensus 20 VktwFnQp~rK~rRR~aR~ 38 (212)
T PTZ00352 20 VKTWYNQPGRKKRRRLARQ 38 (212)
T ss_pred cccccCchHHHHHHHHHHH
Confidence 88999 4444444555443
No 33
>PTZ00192 60S ribosomal protein L13; Provisional
Probab=28.62 E-value=60 Score=22.61 Aligned_cols=18 Identities=17% Similarity=0.398 Sum_probs=10.0
Q ss_pred ceeecCc-hhHHHHHHHHh
Q psy5351 2 VEVWFQN-RRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQN-RR~K~kK~~k~ 19 (65)
|++||-- =|-+-|++.+.
T Consensus 27 VktwFnQP~rK~rRR~~R~ 45 (218)
T PTZ00192 27 VKVFLNQPAQKHRRRRLRL 45 (218)
T ss_pred eeeecCchHHHHHHHHHHH
Confidence 8999933 34444444443
No 34
>KOG4752|consensus
Probab=25.88 E-value=36 Score=15.93 Aligned_cols=7 Identities=86% Similarity=1.607 Sum_probs=4.8
Q ss_pred hHHHHHH
Q psy5351 10 RTKWRKK 16 (65)
Q Consensus 10 R~K~kK~ 16 (65)
|+||+|.
T Consensus 2 r~kwrkk 8 (26)
T KOG4752|consen 2 RAKWRKK 8 (26)
T ss_pred chHHHHH
Confidence 6777764
No 35
>PF06505 XylR_N: Activator of aromatic catabolism; InterPro: IPR010523 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to IPR004096 from INTERPRO.
Probab=23.62 E-value=25 Score=21.41 Aligned_cols=9 Identities=22% Similarity=0.977 Sum_probs=6.5
Q ss_pred eeecCchhH
Q psy5351 3 EVWFQNRRT 11 (65)
Q Consensus 3 KvWFQNRR~ 11 (65)
+|||.+.||
T Consensus 14 ~Iwl~~~Rm 22 (103)
T PF06505_consen 14 RIWLNGQRM 22 (103)
T ss_pred eEEECCEEE
Confidence 478887775
No 36
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.50 E-value=22 Score=25.09 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=14.4
Q ss_pred CceeecCchhHHHHHHHH
Q psy5351 1 MVEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k 18 (65)
+|+.||++||-..+.--+
T Consensus 202 ~~~~~F~~RRKtl~n~l~ 219 (259)
T COG0030 202 FVKAAFSQRRKTLRNNLK 219 (259)
T ss_pred HHHHHHhhhhHHHHHHHH
Confidence 467899999988887655
No 37
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=22.05 E-value=26 Score=16.00 Aligned_cols=6 Identities=50% Similarity=1.525 Sum_probs=4.9
Q ss_pred ecCchh
Q psy5351 5 WFQNRR 10 (65)
Q Consensus 5 WFQNRR 10 (65)
||-||.
T Consensus 8 WFE~~g 13 (22)
T PF08452_consen 8 WFESRG 13 (22)
T ss_pred hhhhCC
Confidence 998885
No 38
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=21.46 E-value=1.8e+02 Score=20.83 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=7.0
Q ss_pred hhHHHHHHHHh
Q psy5351 9 RRTKWRKKHAA 19 (65)
Q Consensus 9 RR~K~kK~~k~ 19 (65)
+|+|.||++..
T Consensus 261 ~Ra~~kR~~~~ 271 (340)
T PF12794_consen 261 ERAKEKRAEAL 271 (340)
T ss_pred HHHHHHHHHHH
Confidence 46777777653
No 39
>PF05703 Auxin_canalis: Auxin canalisation; InterPro: IPR008546 This domain consists of several plant proteins of unknown function.
Probab=20.96 E-value=44 Score=23.54 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=14.3
Q ss_pred ceeecCchhHHHHHHHHhhHH
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMA 22 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~ 22 (65)
|.-||+-|+.|.|-..+.+..
T Consensus 103 i~~w~~~~~~kkkee~R~~~A 123 (242)
T PF05703_consen 103 IGRWLKDRKEKKKEEARAHNA 123 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566999998866655554433
No 40
>KOG4580|consensus
Probab=20.67 E-value=43 Score=21.04 Aligned_cols=10 Identities=60% Similarity=1.122 Sum_probs=8.0
Q ss_pred eeecCchhHH
Q psy5351 3 EVWFQNRRTK 12 (65)
Q Consensus 3 KvWFQNRR~K 12 (65)
||||-|-|.=
T Consensus 11 KV~fANERTF 20 (112)
T KOG4580|consen 11 KVWFANERTF 20 (112)
T ss_pred eeeeechHHH
Confidence 7899998853
No 41
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=20.10 E-value=45 Score=21.37 Aligned_cols=10 Identities=60% Similarity=1.122 Sum_probs=8.0
Q ss_pred eeecCchhHH
Q psy5351 3 EVWFQNRRTK 12 (65)
Q Consensus 3 KvWFQNRR~K 12 (65)
||||-|-|.=
T Consensus 26 Kv~fAnERTf 35 (126)
T COG5264 26 KVWFANERTF 35 (126)
T ss_pred eeeeechHHH
Confidence 7899998853
Done!