Query psy5351
Match_columns 65
No_of_seqs 105 out of 426
Neff 6.0
Searched_HMMs 29240
Date Sat Aug 17 00:22:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nzz_A Penetratin conjugated G 99.4 4.4E-14 1.5E-18 72.6 -0.4 18 2-19 3-20 (37)
2 2cue_A Paired box protein PAX6 99.0 6.3E-11 2.2E-15 67.9 0.2 21 2-22 51-71 (80)
3 2ecb_A Zinc fingers and homeob 98.9 3.2E-11 1.1E-15 71.6 -3.3 17 2-18 55-71 (89)
4 1puf_A HOX-1.7, homeobox prote 98.9 2.1E-10 7.1E-15 65.3 -0.1 18 2-19 57-74 (77)
5 1uhs_A HOP, homeodomain only p 98.8 1.8E-10 6.2E-15 64.8 -0.8 17 2-18 46-62 (72)
6 2hi3_A Homeodomain-only protei 98.8 2.2E-10 7.6E-15 64.7 -0.6 17 2-18 47-63 (73)
7 2dms_A Homeobox protein OTX2; 98.8 7.3E-11 2.5E-15 67.6 -3.0 18 2-19 51-68 (80)
8 1ahd_P Antennapedia protein mu 98.8 1.9E-10 6.6E-15 64.2 -1.2 18 2-19 46-63 (68)
9 1nk2_P Homeobox protein VND; h 98.8 3.4E-10 1.2E-14 64.5 -0.2 18 2-19 53-70 (77)
10 1yz8_P Pituitary homeobox 2; D 98.8 2.7E-10 9.2E-15 63.5 -0.9 18 2-19 47-64 (68)
11 3a01_A Homeodomain-containing 98.8 3.1E-10 1.1E-14 66.9 -0.6 18 2-19 61-78 (93)
12 2dmq_A LIM/homeobox protein LH 98.8 1.9E-10 6.4E-15 65.7 -1.6 18 1-18 50-67 (80)
13 1zq3_P PRD-4, homeotic bicoid 98.8 3.8E-10 1.3E-14 62.9 -0.3 18 2-19 46-63 (68)
14 2l9r_A Homeobox protein NKX-3. 98.8 8.5E-11 2.9E-15 66.7 -3.9 17 2-18 48-64 (69)
15 1ftt_A TTF-1 HD, thyroid trans 98.8 3.4E-10 1.2E-14 63.1 -1.3 18 2-19 46-63 (68)
16 2da5_A Zinc fingers and homeob 98.8 2.7E-10 9.2E-15 64.8 -2.0 17 2-18 51-67 (75)
17 2da4_A Hypothetical protein DK 98.8 5.9E-10 2E-14 63.8 -0.6 17 1-17 55-71 (80)
18 2dmp_A Zinc fingers and homeob 98.8 1.8E-10 6.1E-15 67.6 -3.2 18 2-19 57-74 (89)
19 1b72_B Protein (PBX1); homeodo 98.7 1.3E-09 4.3E-14 63.1 -0.0 21 2-22 48-68 (87)
20 2cuf_A FLJ21616 protein; homeo 98.7 1.1E-09 3.7E-14 64.6 -0.3 18 2-19 66-83 (95)
21 2m0c_A Homeobox protein arista 98.7 3.3E-10 1.1E-14 63.6 -3.1 18 2-19 53-70 (75)
22 2ly9_A Zinc fingers and homeob 98.7 4.5E-10 1.6E-14 63.2 -2.6 17 2-18 50-66 (74)
23 2l7z_A Homeobox protein HOX-A1 98.7 7.3E-10 2.5E-14 62.6 -2.1 17 2-18 51-67 (73)
24 2ecc_A Homeobox and leucine zi 98.7 1.2E-09 4.2E-14 63.3 -1.2 18 1-18 46-63 (76)
25 3nar_A ZHX1, zinc fingers and 98.7 8.3E-10 2.8E-14 65.3 -2.2 17 2-18 69-85 (96)
26 2k40_A Homeobox expressed in E 98.6 1E-09 3.4E-14 60.8 -2.5 17 2-18 45-61 (67)
27 2dn0_A Zinc fingers and homeob 98.6 5.3E-10 1.8E-14 63.5 -3.8 17 2-18 52-68 (76)
28 1puf_B PRE-B-cell leukemia tra 98.6 2.3E-09 8E-14 60.2 -1.2 18 2-19 48-65 (73)
29 2da6_A Hepatocyte nuclear fact 98.6 4.7E-09 1.6E-13 63.8 -0.4 23 1-23 70-92 (102)
30 2xsd_C POU domain, class 3, tr 98.6 1.7E-09 5.8E-14 69.5 -3.0 19 1-19 142-160 (164)
31 1le8_B Mating-type protein alp 98.5 3.8E-09 1.3E-13 60.9 -2.1 17 2-18 49-65 (83)
32 2dmn_A Homeobox protein TGIF2L 98.4 1.3E-08 4.6E-13 58.8 -1.0 17 2-18 54-70 (83)
33 3k2a_A Homeobox protein MEIS2; 98.4 2E-08 6.8E-13 56.1 -1.5 17 2-18 45-61 (67)
34 1lfb_A Liver transcription fac 98.3 1E-08 3.4E-13 61.6 -3.7 18 2-19 74-91 (99)
35 2d5v_A Hepatocyte nuclear fact 98.2 2.1E-08 7E-13 63.8 -3.6 18 2-19 141-158 (164)
36 2da7_A Zinc finger homeobox pr 98.2 5.7E-08 1.9E-12 55.8 -1.5 12 1-12 48-59 (71)
37 2lk2_A Homeobox protein TGIF1; 98.0 8.1E-07 2.8E-11 52.7 -0.5 17 2-18 52-68 (89)
38 2jpf_A Hypothetical protein; a 39.5 2.6 8.8E-05 25.4 -1.7 8 2-9 54-61 (127)
39 1y4m_A HERV-FRD_6P24.1 proviru 31.8 7.1 0.00024 20.7 -0.6 7 5-11 23-29 (53)
40 1mof_A Moloney murine leukemia 30.6 7.6 0.00026 20.7 -0.6 7 5-11 25-31 (55)
41 2jqo_A Hypothetical protein YO 24.1 19 0.00065 21.6 0.3 6 2-7 77-82 (108)
42 1b72_A Protein (homeobox prote 23.0 20 0.0007 20.0 0.3 13 2-14 10-22 (97)
No 1
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.36 E-value=4.4e-14 Score=72.59 Aligned_cols=18 Identities=50% Similarity=1.208 Sum_probs=16.9
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+||||||||||||....
T Consensus 3 VkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 3 IKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp TTTTTTCSHHHHTSSHHH
T ss_pred ceeccHHHHHHHHHHhHH
Confidence 899999999999999885
No 2
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.97 E-value=6.3e-11 Score=67.95 Aligned_cols=21 Identities=43% Similarity=1.050 Sum_probs=18.3
Q ss_pred ceeecCchhHHHHHHHHhhHH
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMA 22 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~ 22 (65)
|+|||||||||+||+.+....
T Consensus 51 V~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 51 IQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhc
Confidence 899999999999999886443
No 3
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.88 E-value=3.2e-11 Score=71.56 Aligned_cols=17 Identities=18% Similarity=0.609 Sum_probs=15.5
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
||||||||||||+|..+
T Consensus 55 VkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 55 IDAWFTEKKKSKALKEE 71 (89)
T ss_dssp HHHHHHHHHHHHHSCCS
T ss_pred CeecccccchHHHHHHH
Confidence 89999999999999765
No 4
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=98.87 E-value=2.1e-10 Score=65.35 Aligned_cols=18 Identities=50% Similarity=0.938 Sum_probs=16.6
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||||+||..+.
T Consensus 57 V~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 57 VKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 899999999999999874
No 5
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.85 E-value=1.8e-10 Score=64.79 Aligned_cols=17 Identities=29% Similarity=0.986 Sum_probs=15.8
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+|||||||||+||+.+
T Consensus 46 V~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 46 TQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhHHhHHHHHHHhhhcc
Confidence 89999999999999874
No 6
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.84 E-value=2.2e-10 Score=64.66 Aligned_cols=17 Identities=29% Similarity=0.986 Sum_probs=15.8
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+|||||||||+||+.+
T Consensus 47 V~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 47 TQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 89999999999999875
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=7.3e-11 Score=67.61 Aligned_cols=18 Identities=50% Similarity=1.030 Sum_probs=16.4
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||||+||+.+.
T Consensus 51 V~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 51 VQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp HHHHHHHHHTHHHHTTCS
T ss_pred hhhhhHHHhHHhhHHHHc
Confidence 899999999999998763
No 8
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=98.83 E-value=1.9e-10 Score=64.23 Aligned_cols=18 Identities=50% Similarity=1.291 Sum_probs=16.3
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||||+||+.+.
T Consensus 46 V~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 46 IKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred hhHHhHHHHhHHhHhccc
Confidence 899999999999998763
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=98.83 E-value=3.4e-10 Score=64.46 Aligned_cols=18 Identities=39% Similarity=0.822 Sum_probs=16.3
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||+|+||....
T Consensus 53 V~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 53 VKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhcchhhhhcc
Confidence 899999999999998764
No 10
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=98.82 E-value=2.7e-10 Score=63.45 Aligned_cols=18 Identities=61% Similarity=1.291 Sum_probs=16.4
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||+|+||..+.
T Consensus 47 V~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 47 VRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhHHHHHHhhc
Confidence 899999999999998764
No 11
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.82 E-value=3.1e-10 Score=66.94 Aligned_cols=18 Identities=67% Similarity=1.343 Sum_probs=16.4
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||+|+||+...
T Consensus 61 V~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 61 VKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred cccccHhhhhhhhhhhHH
Confidence 899999999999998764
No 12
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.9e-10 Score=65.69 Aligned_cols=18 Identities=44% Similarity=0.977 Sum_probs=16.2
Q ss_pred CceeecCchhHHHHHHHH
Q psy5351 1 MVEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k 18 (65)
.|+|||||||+|+||+..
T Consensus 50 qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 50 VLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhHccHHHHHHHHHHHH
Confidence 389999999999999875
No 13
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.81 E-value=3.8e-10 Score=62.92 Aligned_cols=18 Identities=33% Similarity=0.864 Sum_probs=16.4
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||+|+|++.+.
T Consensus 46 V~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 46 VKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhHhhHHHHHHHHHHhcc
Confidence 899999999999999763
No 14
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.78 E-value=8.5e-11 Score=66.74 Aligned_cols=17 Identities=53% Similarity=1.003 Sum_probs=15.3
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|||||||||+|+||+..
T Consensus 48 VqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 48 VKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp HHHHHHHHHHHSCCSSS
T ss_pred eeecchhhhhhhhhhhh
Confidence 89999999999998754
No 15
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.77 E-value=3.4e-10 Score=63.11 Aligned_cols=18 Identities=39% Similarity=0.859 Sum_probs=16.3
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||+|+|++.+.
T Consensus 46 V~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 46 VKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred hHHHhHHHhhhhhhhhhH
Confidence 899999999999998763
No 16
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.7e-10 Score=64.77 Aligned_cols=17 Identities=29% Similarity=0.771 Sum_probs=15.8
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+|||||||||+||+.+
T Consensus 51 V~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 51 IDSWFSERRKKVNAEET 67 (75)
T ss_dssp HHHHHHHHTTHHHHSSC
T ss_pred hhHhhHHHHHHHHHhhh
Confidence 89999999999999875
No 17
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=5.9e-10 Score=63.77 Aligned_cols=17 Identities=41% Similarity=0.796 Sum_probs=15.1
Q ss_pred CceeecCchhHHHHHHH
Q psy5351 1 MVEVWFQNRRTKWRKKH 17 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~ 17 (65)
.|+|||||||+|+||..
T Consensus 55 qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 55 IVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HhhHhHHHHHHHHhhcc
Confidence 38999999999999964
No 18
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.8e-10 Score=67.63 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=16.2
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||+|+|++.+.
T Consensus 57 V~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 57 IDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp HHHHHHHHHHHHHTSCSC
T ss_pred ccHhhHhHHHHHHHHhHh
Confidence 899999999999998763
No 19
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.72 E-value=1.3e-09 Score=63.05 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=17.6
Q ss_pred ceeecCchhHHHHHHHHhhHH
Q psy5351 2 VEVWFQNRRTKWRKKHAAEMA 22 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~~~~ 22 (65)
|+|||||||+|+||.......
T Consensus 48 V~~WFqNrR~r~kk~~~~~~~ 68 (87)
T 1b72_B 48 VSNWFGNKRIRYKKNIGKFQE 68 (87)
T ss_dssp HHHHHHHHHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHhhhccccccc
Confidence 899999999999998765433
No 20
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.72 E-value=1.1e-09 Score=64.56 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=16.5
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||+|+|++.+.
T Consensus 66 V~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 66 VYNWFANRRKEIKRRANI 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 899999999999999874
No 21
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.69 E-value=3.3e-10 Score=63.64 Aligned_cols=18 Identities=67% Similarity=1.326 Sum_probs=16.1
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||+|+||..+.
T Consensus 53 V~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 53 VQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp HHHHHHHHHHHHTCCCCC
T ss_pred HHHHhHHHHHHHHHHHhh
Confidence 899999999999998663
No 22
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.69 E-value=4.5e-10 Score=63.23 Aligned_cols=17 Identities=24% Similarity=0.671 Sum_probs=15.6
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|||||||||+|+||+..
T Consensus 50 V~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 50 IKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp HHHHHHHHHHHTTTTTC
T ss_pred eeeCChhHhHHHHhhCc
Confidence 89999999999999864
No 23
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=98.67 E-value=7.3e-10 Score=62.59 Aligned_cols=17 Identities=53% Similarity=0.865 Sum_probs=15.5
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+|||||||+|+||...
T Consensus 51 V~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 51 VTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp HHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhHHHHHHhc
Confidence 89999999999999754
No 24
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.67 E-value=1.2e-09 Score=63.26 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=15.6
Q ss_pred CceeecCchhHHHHHHHH
Q psy5351 1 MVEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k 18 (65)
.|||||||||||+|+..-
T Consensus 46 qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 46 EIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HhhHHhHhhHHHHHHHHH
Confidence 389999999999999743
No 25
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.66 E-value=8.3e-10 Score=65.28 Aligned_cols=17 Identities=24% Similarity=0.812 Sum_probs=15.3
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|||||||||+|+||+.-
T Consensus 69 V~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 69 IVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred eeecchhhhhHhhhhcc
Confidence 89999999999999753
No 26
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.62 E-value=1e-09 Score=60.85 Aligned_cols=17 Identities=47% Similarity=1.156 Sum_probs=15.4
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+|||||||+|+|+..+
T Consensus 45 V~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 45 IQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp HHHHHHHHHHHHHCSCC
T ss_pred hhHhhHhHHHHHhHhch
Confidence 89999999999998765
No 27
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=5.3e-10 Score=63.49 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=15.6
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+|||||||+|+||+.+
T Consensus 52 V~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 52 VRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp HHHHHHHHHHHSSSCCS
T ss_pred hhHHhHHHhHHHHHhcc
Confidence 89999999999999765
No 28
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.61 E-value=2.3e-09 Score=60.21 Aligned_cols=18 Identities=33% Similarity=0.807 Sum_probs=16.0
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||+|+|+....
T Consensus 48 V~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 48 VSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp HHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhhccccccc
Confidence 899999999999998653
No 29
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=4.7e-09 Score=63.78 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=18.9
Q ss_pred CceeecCchhHHHHHHHHhhHHH
Q psy5351 1 MVEVWFQNRRTKWRKKHAAEMAT 23 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k~~~~~ 23 (65)
+|+|||||||+|+|+..+.....
T Consensus 70 ~V~~WFqNRR~k~kr~~~~~~~~ 92 (102)
T 2da6_A 70 RVYNWFANRRKEEAFRQKLAMDA 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ceeeeecchHHHHHHhhHhhhcc
Confidence 38999999999999998765443
No 30
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=98.56 E-value=1.7e-09 Score=69.55 Aligned_cols=19 Identities=47% Similarity=0.809 Sum_probs=16.2
Q ss_pred CceeecCchhHHHHHHHHh
Q psy5351 1 MVEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 1 vVKvWFQNRR~K~kK~~k~ 19 (65)
+|+|||||||+|+||+.+.
T Consensus 142 qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 142 VVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp HHHHHHHHHHHHHTBSCC-
T ss_pred hhhhhhHHhhHHHhhccCC
Confidence 4899999999999998753
No 31
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.51 E-value=3.8e-09 Score=60.95 Aligned_cols=17 Identities=24% Similarity=0.480 Sum_probs=15.3
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+|||||||+|+|+...
T Consensus 49 V~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 49 IKNWVAARRAKEKTITI 65 (83)
T ss_dssp HHHHHHHHHHHHTTSCC
T ss_pred cccccHHHHcccccccc
Confidence 89999999999999754
No 32
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-08 Score=58.77 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=15.3
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|+|||||||+|+++...
T Consensus 54 V~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 54 ISNWFINARRRILPDML 70 (83)
T ss_dssp HHHHHHHHHHHTHHHHT
T ss_pred hhHHhhhhHhhhcHHHH
Confidence 89999999999998754
No 33
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.37 E-value=2e-08 Score=56.06 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.7
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|++||||||+|+||...
T Consensus 45 V~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 45 VNNWFINARRRIVQPMI 61 (67)
T ss_dssp HHHHHHHHHHHHHSCC-
T ss_pred hhhhhHHHHHHHhHHHH
Confidence 88999999999998754
No 34
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.32 E-value=1e-08 Score=61.60 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=14.4
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||||.++..+.
T Consensus 74 V~vWFqNRR~k~k~k~~~ 91 (99)
T 1lfb_A 74 VYNWFANRRKEEAFRHKL 91 (99)
T ss_dssp HHHHHHHHHHTTSCCC--
T ss_pred eeeccHHHHHHHHHhchh
Confidence 899999999998876654
No 35
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.25 E-value=2.1e-08 Score=63.75 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=14.3
Q ss_pred ceeecCchhHHHHHHHHh
Q psy5351 2 VEVWFQNRRTKWRKKHAA 19 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k~ 19 (65)
|+|||||||||+|+....
T Consensus 141 V~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 141 VSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp HHHHHHHHHHTSSCC---
T ss_pred hhhcChhhhccccccCCC
Confidence 899999999999988654
No 36
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5.7e-08 Score=55.85 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=10.7
Q ss_pred CceeecCchhHH
Q psy5351 1 MVEVWFQNRRTK 12 (65)
Q Consensus 1 vVKvWFQNRR~K 12 (65)
||||||||||+.
T Consensus 48 VVrVWFqNrRa~ 59 (71)
T 2da7_A 48 FVKEWFEQRKVY 59 (71)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhcccc
Confidence 799999999973
No 37
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=97.96 E-value=8.1e-07 Score=52.72 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=15.2
Q ss_pred ceeecCchhHHHHHHHH
Q psy5351 2 VEVWFQNRRTKWRKKHA 18 (65)
Q Consensus 2 VKvWFQNRR~K~kK~~k 18 (65)
|++||||||+++++...
T Consensus 52 V~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 52 VCNWFINARRRLLPDML 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 78999999999998764
No 38
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=39.52 E-value=2.6 Score=25.40 Aligned_cols=8 Identities=63% Similarity=1.170 Sum_probs=7.0
Q ss_pred ceeecCch
Q psy5351 2 VEVWFQNR 9 (65)
Q Consensus 2 VKvWFQNR 9 (65)
||||.||-
T Consensus 54 vkvwmqnl 61 (127)
T 2jpf_A 54 VKVWMQNL 61 (127)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78999996
No 39
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=31.78 E-value=7.1 Score=20.71 Aligned_cols=7 Identities=57% Similarity=0.677 Sum_probs=5.1
Q ss_pred ecCchhH
Q psy5351 5 WFQNRRT 11 (65)
Q Consensus 5 WFQNRR~ 11 (65)
=+||||+
T Consensus 23 vlQNRra 29 (53)
T 1y4m_A 23 VLQNRRG 29 (53)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3688886
No 40
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=30.65 E-value=7.6 Score=20.74 Aligned_cols=7 Identities=57% Similarity=0.677 Sum_probs=5.1
Q ss_pred ecCchhH
Q psy5351 5 WFQNRRT 11 (65)
Q Consensus 5 WFQNRR~ 11 (65)
=+||||+
T Consensus 25 vlQNRra 31 (55)
T 1mof_A 25 VLQNRRG 31 (55)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3688886
No 41
>2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis}
Probab=24.07 E-value=19 Score=21.64 Aligned_cols=6 Identities=50% Similarity=1.669 Sum_probs=4.7
Q ss_pred ceeecC
Q psy5351 2 VEVWFQ 7 (65)
Q Consensus 2 VKvWFQ 7 (65)
|||||-
T Consensus 77 IKVW~s 82 (108)
T 2jqo_A 77 IKVWFH 82 (108)
T ss_dssp EEEEEE
T ss_pred EEEEeh
Confidence 788984
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=23.03 E-value=20 Score=19.98 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=6.0
Q ss_pred ceeecCchhHHHH
Q psy5351 2 VEVWFQNRRTKWR 14 (65)
Q Consensus 2 VKvWFQNRR~K~k 14 (65)
|..||++.|...+
T Consensus 10 ~~~W~~~~r~~~~ 22 (97)
T 1b72_A 10 TFDWMKVKRNPPK 22 (97)
T ss_dssp CCGGGGC------
T ss_pred cccccccccCCCC
Confidence 5679999997655
Done!