RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5351
(65 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 30.1 bits (68), Expect = 0.002
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 2 VEVWFQNRRTKWRKKH 17
+++WFQNRR KW+K++
Sbjct: 41 IKIWFQNRRMKWKKEN 56
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 30.4 bits (68), Expect = 0.004
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 2 VEVWFQNRRTKWRKKH 17
V++WFQNRR K +K+
Sbjct: 71 VKIWFQNRRMKQKKRE 86
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 28.7 bits (64), Expect = 0.011
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 2 VEVWFQNRRTKWRKK 16
++VWFQNRR K +++
Sbjct: 43 IKVWFQNRRMKDKRQ 57
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 28.5 bits (64), Expect = 0.012
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 2 VEVWFQNRRTKWRK 15
++ WF+ RR + +
Sbjct: 38 IQRWFRQRRNQEKP 51
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 28.3 bits (63), Expect = 0.016
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 2 VEVWFQNRRTKWRK 15
+ +WFQNRR K +K
Sbjct: 45 ITIWFQNRRVKEKK 58
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 28.0 bits (62), Expect = 0.024
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 2 VEVWFQNRRTKWRK 15
V++WFQNRR K ++
Sbjct: 44 VKIWFQNRRAKAKR 57
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 27.9 bits (62), Expect = 0.032
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 2 VEVWFQNRRTKWRKKH 17
V++WFQNRR K +K +
Sbjct: 57 VKIWFQNRRMKMKKIN 72
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 27.5 bits (61), Expect = 0.033
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 2 VEVWFQNRRTKWRK 15
V+ WFQNRR KWR+
Sbjct: 44 VKTWFQNRRAKWRR 57
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 27.6 bits (61), Expect = 0.040
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 2 VEVWFQNRRTKWRKKHAA 19
++VWFQNRR + RK+H +
Sbjct: 46 IQVWFQNRRARLRKQHTS 63
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 27.1 bits (60), Expect = 0.046
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 2 VEVWFQNRRTKWRKK 16
+ VWFQN+R K +K+
Sbjct: 47 IRVWFQNKRCKDKKR 61
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 26.8 bits (59), Expect = 0.062
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 2 VEVWFQNRRTKWRKKHAAEM 21
V++WF+NRR + + +
Sbjct: 45 VKIWFKNRRRRHKIQSDQHK 64
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 26.5 bits (58), Expect = 0.085
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 1 MVEVWFQNRRTKWRKK 16
V VWF+NRR KWRK+
Sbjct: 44 RVRVWFKNRRAKWRKR 59
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 26.7 bits (59), Expect = 0.086
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 2 VEVWFQNRRTKWRKKH 17
++VWF NRR KWR++
Sbjct: 45 IQVWFSNRRAKWRREE 60
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 26.9 bits (59), Expect = 0.087
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 1 MVEVWFQNRRTKWRKK 16
V WF NRR + +++
Sbjct: 58 KVYNWFANRRKEIKRR 73
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 25.4 bits (55), Expect = 0.27
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 2 VEVWFQNRRTKWRKKH 17
V++WFQN R K ++
Sbjct: 53 VKIWFQNHRYKTKRAQ 68
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 25.3 bits (55), Expect = 0.27
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 2 VEVWFQNRRTKWRKKHAAEMA 22
V++WFQN R K +++ + A
Sbjct: 46 VKIWFQNHRYKMKRQAKDKAA 66
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 25.4 bits (55), Expect = 0.35
Identities = 2/14 (14%), Positives = 6/14 (42%)
Query: 2 VEVWFQNRRTKWRK 15
+++W N +
Sbjct: 65 LKIWMHNNKNSGPS 78
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 24.4 bits (53), Expect = 0.39
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 2 VEVWFQNRRTK 12
+++WFQN R K
Sbjct: 43 IKIWFQNARAK 53
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 24.7 bits (54), Expect = 0.40
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 1 MVEVWFQNRRTKWR 14
++ WF++RR + +
Sbjct: 45 KIQCWFRHRRNQDK 58
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 24.7 bits (54), Expect = 0.40
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 2 VEVWFQNRRTKWRK 15
++ W NRR K +
Sbjct: 45 IKNWVSNRRRKEKT 58
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 25.1 bits (54), Expect = 0.41
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 2 VEVWFQNRRTKWRKKH 17
V WF NRR + +H
Sbjct: 62 VYNWFANRRKEEAFRH 77
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 24.9 bits (54), Expect = 0.42
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 2 VEVWFQNRRTKWRKKHAAEMATA 24
V WF N+R +++K A
Sbjct: 48 VSNWFGNKRIRYKKNIGKFQEEA 70
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 25.0 bits (54), Expect = 0.43
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 2 VEVWFQNRRTKWRKKH 17
+ WF+ R +WR+
Sbjct: 46 TQKWFKQRLAEWRRSE 61
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 23.7 bits (51), Expect = 0.78
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 2 VEVWFQNRRTKWR 14
V VWF N+R + +
Sbjct: 41 VRVWFINKRMRSK 53
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 22.8 bits (49), Expect = 2.3
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 2 VEVWFQNRRTKWRK 15
V WF N R + +
Sbjct: 49 VNNWFINARRRILQ 62
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 22.5 bits (48), Expect = 2.5
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 2 VEVWFQNRR 10
V +F N R
Sbjct: 42 VSNFFMNAR 50
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 22.7 bits (48), Expect = 3.0
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 2 VEVWFQNRRTKWRK 15
+ +FQN+R +
Sbjct: 52 IIKFFQNQRYHVKH 65
>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase
SerA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 22.2 bits (47), Expect = 6.1
Identities = 6/64 (9%), Positives = 13/64 (20%), Gaps = 20/64 (31%)
Query: 2 VEVWFQNRRTKWRKKHAAEMAT--------------------AKRKQDQVEESEEEEEDD 41
+ V + + A A + E + E +
Sbjct: 33 LSVQVRGELAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKASESPN 92
Query: 42 YRHS 45
+R
Sbjct: 93 HRSV 96
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 21.4 bits (45), Expect = 6.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 2 VEVWFQNRRTKWRK 15
V VWF NRR + ++
Sbjct: 43 VRVWFCNRRQREKR 56
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 21.5 bits (45), Expect = 7.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 2 VEVWFQNRRTKWRKK 16
V VWF NRR K ++
Sbjct: 52 VRVWFCNRRQKGKRS 66
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
{Escherichia coli [TaxId: 562]}
Length = 518
Score = 21.8 bits (46), Expect = 8.6
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 18 AAEMATAKRKQDQVEESEEEEEDDY 42
AE ++R+Q ++E ++ E +
Sbjct: 489 VAEREASERRQQEMEAADTEPFAVW 513
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate
lyase) {Cellvibrio cellulosa [TaxId: 155077]}
Length = 324
Score = 21.8 bits (46), Expect = 9.6
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 5 WFQNRRTKWRKKHA 18
W N RTKW A
Sbjct: 16 WLNNARTKWSASRA 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.122 0.357
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 243,768
Number of extensions: 8376
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 44
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)