BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5352
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 137/341 (40%), Gaps = 104/341 (30%)
Query: 3 ISSLVAGGIAGALAKTTIAPLDRTKINFQISNS------PFSFGDAINFMIKSYKTEGIT 56
+ +AGG+A A++KT +AP++R K+ Q+ ++ + I+ +++ K +G
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 57 SLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAG 116
S WRGN A + R P AL F +++K+I GG+
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIF-----------------------LGGV-- 102
Query: 117 ALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQT 176
DR K ++ +G AG TS YPLD AR R+A V
Sbjct: 103 ----------DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV-------- 144
Query: 177 SSITKKRADTILG-VLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRF----------- 224
+R T LG + I++ +G+R G ++G +++ ++G I F
Sbjct: 145 GKGAAQREFTGLGNCITKIFKSDGLR-GLYQGFNVS-VQGIIIYRAAYFGVYDTAKGMLP 202
Query: 225 ------------------------------VRRRMQTSSITKKRADTI----LGVLRDIY 250
VRRRM S +K AD + + R I
Sbjct: 203 DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS-GRKGADIMYTGTVDCWRKIA 261
Query: 251 REEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKF 291
++EG + FFKG N ++G +G +F +Y+ + KF
Sbjct: 262 KDEGPK-AFFKGAWSNVLRG---MGGAFVL--VLYDEIKKF 296
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 51/202 (25%)
Query: 139 RFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREE 198
+FL A + IT+PLD A+ R+ + +++ ++T++ + R +LG + + R E
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRG--VLGTILTMVRTE 61
Query: 199 G--------------------VRQGFFKGLSMNWIKG----------------------- 215
G VR G + + + KG
Sbjct: 62 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAV 121
Query: 216 --PIALTRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIA 273
P + + RF + Q + +R + + + I REEG+R G +KG S N + I
Sbjct: 122 AQPTDVVKVRF---QAQARAGGGRRYQSTVEAYKTIAREEGIR-GLWKGTSPNVARNAIV 177
Query: 274 VGISFATYDFIYEALTKFFLIS 295
TYD I + L K L++
Sbjct: 178 NCAELVTYDLIKDTLLKANLMT 199
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 4 SSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKT----EGITSLW 59
S L+AG GALA P D K+ FQ + + G +++YKT EGI LW
Sbjct: 106 SRLLAGSTTGALAVAVAQPTDVVKVRFQ-AQARAGGGRRYQSTVEAYKTIAREEGIRGLW 164
Query: 60 RGNSATLAR 68
+G S +AR
Sbjct: 165 KGTSPNVAR 173
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 138 NRFLAGSLAGVTSQSITYPLDLARARMAVTVKA--ERRMQTSSITKKRADTILGVLRDIY 195
+R LAGS G + ++ P D+ + R +A RR Q++ + + I
Sbjct: 106 SRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQST----------VEAYKTIA 155
Query: 196 REEGVRQGFFKGLSMNWIKGPI 217
REEG+R G +KG S N + I
Sbjct: 156 REEGIR-GLWKGTSPNVARNAI 176
>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain
In The Carboxyl-terminus Of The Copi Gamma-subunit
Length = 322
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 141 LAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSIT-KKRADTILGVLRDIYREEG 199
L +L T + P DL +A AE+R +++ +T K+ + + ++I++E+
Sbjct: 6 LERALQQYTLEPSEKPFDLKSVPLATAPLAEQRTESTPVTAAKQPEKVAATRQEIFQEQL 65
Query: 200 VRQGFFKGLS--MNWIKGPIALT--RTRFVRR 227
F+GL P+ALT T +V R
Sbjct: 66 AAVPEFQGLGPLFKSSPEPVALTESETEYVIR 97
>pdb|3PR3|A Chain A, Crystal Structure Of Plasmodium Falciparum
Glucose-6-Phosphate Isomerase (Pf14_0341) In Complex
With Fructose-6-Phosphate
pdb|3PR3|B Chain B, Crystal Structure Of Plasmodium Falciparum
Glucose-6-Phosphate Isomerase (Pf14_0341) In Complex
With Fructose-6-Phosphate
pdb|3QKI|A Chain A, Crystal Structure Of Glucose-6-Phosphate Isomerase
(Pf14_0341) From Plasmodium Falciparum 3d7
pdb|3QKI|B Chain B, Crystal Structure Of Glucose-6-Phosphate Isomerase
(Pf14_0341) From Plasmodium Falciparum 3d7
pdb|3QKI|C Chain C, Crystal Structure Of Glucose-6-Phosphate Isomerase
(Pf14_0341) From Plasmodium Falciparum 3d7
Length = 597
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 235 TKKRADTILGVLRDIYR-EEGVRQGFFKGLSMNWIKGPIAVGI--SFATYDFIYEALTKF 291
K + + GVL+ I + + +R G K K I +GI S+ +F+YEA+ +
Sbjct: 132 NKNVLEDVHGVLKKIEKYSDDIRNGVIKTCKNTKFKNVICIGIGGSYLGTEFVYEAMKYY 191
Query: 292 F 292
+
Sbjct: 192 Y 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,763,704
Number of Sequences: 62578
Number of extensions: 280267
Number of successful extensions: 657
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 9
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)