Query psy5352
Match_columns 305
No_of_seqs 142 out of 1682
Neff 8.9
Searched_HMMs 29240
Date Sat Aug 17 00:23:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1E-47 3.5E-52 344.8 11.8 239 4-294 3-292 (303)
2 1okc_A ADP, ATP carrier protei 100.0 7.8E-47 2.7E-51 338.2 17.0 242 2-288 7-297 (297)
3 2lck_A Mitochondrial uncouplin 100.0 1.9E-31 6.6E-36 239.0 13.0 177 2-230 104-287 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1E-30 3.5E-35 233.5 12.3 165 3-216 113-281 (297)
5 2bnk_A Early protein GP16.7; D 24.4 1.2E+02 0.0042 19.0 4.0 56 189-263 10-65 (67)
6 2od4_A Hypothetical protein; m 17.7 68 0.0023 21.3 1.9 37 258-294 1-37 (101)
7 3tgu_G UQCRQ, mitochondrial ub 16.7 42 0.0014 22.8 0.8 35 258-292 36-70 (81)
8 2acm_A Mucin-1; auto-catalytic 13.9 49 0.0017 20.9 0.5 20 40-59 40-59 (66)
9 2jv8_A Uncharacterized protein 13.2 37 0.0013 21.2 -0.2 28 225-252 35-62 (73)
10 3f2e_A SIRV coat protein; four 12.4 40 0.0014 22.6 -0.3 35 237-271 6-43 (100)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1e-47 Score=344.81 Aligned_cols=239 Identities=23% Similarity=0.370 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhcCCC---------CCCcccHHHHHHHHHHhhCcccccccchhhHHHHhHHHH
Q psy5352 4 SSLVAGGIAGALAKTTIAPLDRTKINFQISNS---------PFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGA 74 (305)
Q Consensus 4 ~~~~aG~~ag~~~~~v~~Pld~iktr~Q~~~~---------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 74 (305)
.++++|++||+++.+++||||+||+|+|++.. ...|++.++++++++++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999865 246899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccchhhHHHHHHhhhhccccchhhhhhccCcccccccchhhHHHHHHHHHHhhhHhhhc
Q psy5352 75 LQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSIT 154 (305)
Q Consensus 75 i~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~ 154 (305)
++|.+||.+|+.+.+... ..+....+++|++||+++.+++
T Consensus 83 i~f~~ye~~k~~~~~~~~----------------------------------------~~~~~~~~~ag~~ag~~~~~~~ 122 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE----------------------------------------HAGIGSRLLAGSTTGALAVAVA 122 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS----------------------------------------SCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCc----------------------------------------CCcHHHHHHHHHHHHHHHHHHc
Confidence 999999999998864311 1345677899999999999999
Q ss_pred ccHHHHHHhhhccchhhhccccccccccccccHHHHHHHHHHhcCcccccccccc-------------------------
Q psy5352 155 YPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLS------------------------- 209 (305)
Q Consensus 155 ~Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~l~~G~~------------------------- 209 (305)
+|+|++|+|+|++.... ....|.+.++++++++++||+++ ||||+.
T Consensus 123 ~Pld~vktrlq~~~~~~--------~~~~~~~~~~~~~~i~~~eG~~g-lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~ 193 (303)
T 2lck_A 123 QPTDVVKVRFQAQARAG--------GGRRYQSTVEAYKTIAREEGIRG-LWKGTSPNVARNAIVNCAELVTYDLIKDTLL 193 (303)
T ss_dssp CHHHHHHHHHHHSCSCC--------CSSSCCCHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHhcccccC--------CCCCCCCHHHHHHHHHHhcChhh-hhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999975320 11234599999999999999999 999991
Q ss_pred ----------cccccccccc-------chHHHHHHhhhcCcccccccCcHHHHHHHHHHhcCccccccccchhhhccccc
Q psy5352 210 ----------MNWIKGPIAL-------TRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPI 272 (305)
Q Consensus 210 ----------~~~l~~~~a~-------tP~dvvk~r~q~~~~~~~~~~~~~~~~~~i~~~eG~~~~ly~G~~~~~~~~~~ 272 (305)
..++++++++ .|+|+||+|||.+.. ..|.+++||+++|+|+||++ +||||+.|+++|.+|
T Consensus 194 ~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~--~~y~~~~~~~~~i~~~eG~~-glyrG~~~~~~r~~p 270 (303)
T 2lck_A 194 KANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL--GQYHSAGHCALTMLRKEGPR-AFYKGFMPSFLRLGS 270 (303)
T ss_dssp TTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS--SSCCSHHHHHHHHHHSSCTH-HHHSCCHHHHHHHHH
T ss_pred hccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc--cccCCHHHHHHHHHHHcChH-HhhccHHHHHHHHHh
Confidence 2344555555 299999999999853 46899999999999999999 999999999999999
Q ss_pred chhhhHhhHHHHHHHHHHhhhc
Q psy5352 273 AVGISFATYDFIYEALTKFFLI 294 (305)
Q Consensus 273 ~~~~~~~~ye~~~~~l~~~~~~ 294 (305)
.++++|.+||.+++.+.+.+..
T Consensus 271 ~~~i~f~~ye~~k~~l~~~~~~ 292 (303)
T 2lck_A 271 WNVVMFVTYEQLKRALMAAYQS 292 (303)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999988766654
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.8e-47 Score=338.15 Aligned_cols=242 Identities=27% Similarity=0.509 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHHHHHhhccchHHHHHHHHhcCCC------CCCcccHHHHHHHHHHhhCcccccccchhhHHHHhHHHHH
Q psy5352 2 VISSLVAGGIAGALAKTTIAPLDRTKINFQISNS------PFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGAL 75 (305)
Q Consensus 2 ~~~~~~aG~~ag~~~~~v~~Pld~iktr~Q~~~~------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~i 75 (305)
.+.++++|++||+++.++++|||+||+|+|++.. ...|+++.+++++++++||++|||||+.+++++.++..++
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 86 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999753 2368899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcccchhhHHHHHHhhhhccccchhhhhhccCcccccccchhhHHHHHHHHHHhhhHhhhcc
Q psy5352 76 QFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITY 155 (305)
Q Consensus 76 ~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~ 155 (305)
+|.+||.+|+.+......++. ........+++|++||++++++++
T Consensus 87 ~f~~ye~~k~~~~~~~~~~~~-----------------------------------~~~~~~~~~~ag~~ag~~~~~~~~ 131 (297)
T 1okc_A 87 NFAFKDKYKQIFLGGVDRHKQ-----------------------------------FWRYFAGNLASGGAAGATSLCFVY 131 (297)
T ss_dssp HHHHHHHHHHHHHTTCCTTTC-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcccc-----------------------------------hHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999965432210000 113456788999999999999999
Q ss_pred cHHHHHHhhhccchhhhccccccccccccccHHHHHHHHHHhcCcccccccccc--------------------------
Q psy5352 156 PLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLS-------------------------- 209 (305)
Q Consensus 156 Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~l~~G~~-------------------------- 209 (305)
|+|++|+|+|++..... ....|++.++++++++++||+++ ||||+.
T Consensus 132 Pld~vktrlq~~~~~~~-------~~~~~~~~~~~~~~i~~~eG~~g-lyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 132 PLDFARTRLAADVGKGA-------AQREFTGLGNCITKIFKSDGLRG-LYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHHHHHHCCCSST-------TTCSCSSHHHHHHHHHHHHCHHH-HTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred cHHHHHHHHhccccCCC-------cCcCCCCHHHHHHHHHHhccHHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999998742110 12235599999999999999999 999991
Q ss_pred -------cccccccccc-------chHHHHHHhhhcCccc---ccccCcHHHHHHHHHHhcCccccccccchhhhccccc
Q psy5352 210 -------MNWIKGPIAL-------TRTRFVRRRMQTSSIT---KKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPI 272 (305)
Q Consensus 210 -------~~~l~~~~a~-------tP~dvvk~r~q~~~~~---~~~~~~~~~~~~~i~~~eG~~~~ly~G~~~~~~~~~~ 272 (305)
..++++++++ .|+||||+|||.+... ...|.+++||+++|+|+||++ +||||+.|+++|. +
T Consensus 204 ~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~-glyrG~~~~~~r~-~ 281 (297)
T 1okc_A 204 PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPK-AFFKGAWSNVLRG-M 281 (297)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGG-GGGTTHHHHHHHH-H
T ss_pred CCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcC-eEecchHHHHHhh-c
Confidence 1234444444 2999999999987532 346899999999999999999 9999999999995 5
Q ss_pred chhhhHhhHHHHHHHH
Q psy5352 273 AVGISFATYDFIYEAL 288 (305)
Q Consensus 273 ~~~~~~~~ye~~~~~l 288 (305)
.++++|.+||.+++++
T Consensus 282 ~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 282 GGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHTC----
T ss_pred cceeeehHHHHHHhhC
Confidence 7899999999998764
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.97 E-value=1.9e-31 Score=238.96 Aligned_cols=177 Identities=23% Similarity=0.322 Sum_probs=154.0
Q ss_pred hHHHHHHHHHHHHHHhhccchHHHHHHHHhcCCC---CCCcccHHHHHHHHHHhhCcccccccchhhHHHHhHHHHHHHH
Q psy5352 2 VISSLVAGGIAGALAKTTIAPLDRTKINFQISNS---PFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFT 78 (305)
Q Consensus 2 ~~~~~~aG~~ag~~~~~v~~Pld~iktr~Q~~~~---~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~i~f~ 78 (305)
.+.++++|++||+++.++++|+|+||+|+|++.. ...|++..+++++|+++||++|||||+.|++++.++..+++|.
T Consensus 104 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~ 183 (303)
T 2lck_A 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999864 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcccchhhHHHHHHhhhhccccchhhhhhccCcccccccchhhHHHHHHHHHHhhhHhhhcccHH
Q psy5352 79 AHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLD 158 (305)
Q Consensus 79 ~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~Pld 158 (305)
+||.+|+.+.+... ...+....+++|++||++++++++|+|
T Consensus 184 ~ye~~k~~l~~~~~---------------------------------------~~~~~~~~~~~g~~ag~~~~~~~~P~d 224 (303)
T 2lck_A 184 TYDLIKDTLLKANL---------------------------------------MTDDLPCHFTSAFGAGFCTTVIASPVD 224 (303)
T ss_dssp HHHHHHHTTTTTTS---------------------------------------CCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC---------------------------------------CCCchHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999998865432 123456678999999999999999999
Q ss_pred HHHHhhhccchhhhccccccccccccccHHHHHHHHHHhcCcccccccccccccccccccc----chHHHHHHhhh
Q psy5352 159 LARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAL----TRTRFVRRRMQ 230 (305)
Q Consensus 159 vvktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~l~~G~~~~~l~~~~a~----tP~dvvk~r~q 230 (305)
+||+|+|++....++ +.++++++++++||+++ ||||+.++++...+.. .-+|.+|..+.
T Consensus 225 vvktrlq~~~~~~y~------------~~~~~~~~i~~~eG~~g-lyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 225 VVKTRYMNSALGQYH------------SAGHCALTMLRKEGPRA-FYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHHHTTCCSSSCC------------SHHHHHHHHHHSSCTHH-HHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhccccccC------------CHHHHHHHHHHHcChHH-hhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999998644444 99999999999999999 9999999988776654 26777776553
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.97 E-value=1e-30 Score=233.54 Aligned_cols=165 Identities=23% Similarity=0.347 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHhcCCC----CCCcccHHHHHHHHHHhhCcccccccchhhHHHHhHHHHHHHH
Q psy5352 3 ISSLVAGGIAGALAKTTIAPLDRTKINFQISNS----PFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFT 78 (305)
Q Consensus 3 ~~~~~aG~~ag~~~~~v~~Pld~iktr~Q~~~~----~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~i~f~ 78 (305)
+.++++|++||+++.++++|+|+||+|+|++.. ...|+++.+++++|+++||++|||||+.|++++.++..+++|.
T Consensus 113 ~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~ 192 (297)
T 1okc_A 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFG 192 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999753 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcccchhhHHHHHHhhhhccccchhhhhhccCcccccccchhhHHHHHHHHHHhhhHhhhcccHH
Q psy5352 79 AHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLD 158 (305)
Q Consensus 79 ~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~Pld 158 (305)
+||.+|+.+.+. ...+....+++|++||++++++++|+|
T Consensus 193 ~ye~~k~~~~~~-----------------------------------------~~~~~~~~~~~g~~ag~~a~~~t~P~d 231 (297)
T 1okc_A 193 VYDTAKGMLPDP-----------------------------------------KNVHIIVSWMIAQTVTAVAGLVSYPFD 231 (297)
T ss_dssp HHHHHHHSSCGG-----------------------------------------GCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-----------------------------------------CCccHHHHHHHHHHHHHHHHHhcChHH
Confidence 999999976432 123456678899999999999999999
Q ss_pred HHHHhhhccchhhhccccccccccccccHHHHHHHHHHhcCccccccccccccccccc
Q psy5352 159 LARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGP 216 (305)
Q Consensus 159 vvktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~l~~G~~~~~l~~~ 216 (305)
+||+|+|++.... .....|++.++++++++++||+++ ||||+.++++..+
T Consensus 232 vvktr~q~~~~~~-------~~~~~y~~~~~~~~~i~~~eG~~g-lyrG~~~~~~r~~ 281 (297)
T 1okc_A 232 TVRRRMMMQSGRK-------GADIMYTGTVDCWRKIAKDEGPKA-FFKGAWSNVLRGM 281 (297)
T ss_dssp HHHHHHHTTTTCC-------GGGCSCSSHHHHHHHHHHHHCGGG-GGTTHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-------CCCCCCCCHHHHHHHHHHHcCcCe-EecchHHHHHhhc
Confidence 9999999874321 012245699999999999999999 9999999888743
No 5
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=24.39 E-value=1.2e+02 Score=19.00 Aligned_cols=56 Identities=11% Similarity=0.287 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCccccccccccccccccccccchHHHHHHhhhcCcccccccCcHHHHHHHHHHhcCccccccccc
Q psy5352 189 GVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGL 263 (305)
Q Consensus 189 ~~~~~i~~~~G~~g~l~~G~~~~~l~~~~a~tP~dvvk~r~q~~~~~~~~~~~~~~~~~~i~~~eG~~~~ly~G~ 263 (305)
....+.|.+.|++- |.|.|.--....-......-+.++.-|.-|+-|.-+ -+|||.
T Consensus 10 ~~vLDlYe~SnIrI------------------P~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN~K-Kly~g~ 65 (67)
T 2bnk_A 10 VAVLDLYEQSNIRI------------------PSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLENQK-KLYRGS 65 (67)
T ss_dssp HHHHHHHHHTTCCC------------------CHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTS-CCCCSC
T ss_pred HHHHHHHHHcCCcC------------------cHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhhhH-HHHhcc
Confidence 34556677777775 999886554222111222346677788899999998 999995
No 6
>2od4_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Uncultured marine organism} SCOP: d.58.4.20
Probab=17.65 E-value=68 Score=21.25 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=32.4
Q ss_pred cccccchhhhcccccchhhhHhhHHHHHHHHHHhhhc
Q psy5352 258 GFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFFLI 294 (305)
Q Consensus 258 ~ly~G~~~~~~~~~~~~~~~~~~ye~~~~~l~~~~~~ 294 (305)
|+|.|-.|-.+|.+.-++-.=.-||....++++.|..
T Consensus 1 gmfagsipmyirvvsitaqsklqfdmtvtyfenvwsp 37 (101)
T 2od4_A 1 GMFAGSIPMYIRVVSITAQSKLQFDMTVTYFENVWSP 37 (101)
T ss_dssp CCSCCSCCCEEEEEEEECSSHHHHHHHHHHHHHTHHH
T ss_pred CccccccceEEEEEEEEeeceeeeeEEEEeeeccCCc
Confidence 5688888999999988888888899999999999964
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=16.75 E-value=42 Score=22.84 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=26.6
Q ss_pred cccccchhhhcccccchhhhHhhHHHHHHHHHHhh
Q psy5352 258 GFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFF 292 (305)
Q Consensus 258 ~ly~G~~~~~~~~~~~~~~~~~~ye~~~~~l~~~~ 292 (305)
..+|-+.-.++.++|...+.+.+|++-.+.-+...
T Consensus 36 N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 36 NVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556777788999999999998888776654
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=13.93 E-value=49 Score=20.95 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHhhCccccc
Q psy5352 40 GDAINFMIKSYKTEGITSLW 59 (305)
Q Consensus 40 ~~~~~~~~~i~~~~G~~gly 59 (305)
+++...+.+|++++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56888999999999999886
No 9
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=13.17 E-value=37 Score=21.22 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=18.9
Q ss_pred HHHhhhcCcccccccCcHHHHHHHHHHh
Q psy5352 225 VRRRMQTSSITKKRADTILGVLRDIYRE 252 (305)
Q Consensus 225 vk~r~q~~~~~~~~~~~~~~~~~~i~~~ 252 (305)
||.++...-....+|.+++|.++.|+|.
T Consensus 35 vknkwssrylpytqydslldlaraiird 62 (73)
T 2jv8_A 35 VKNKWSSRYLPYTQYDSLLDLARAIIRD 62 (73)
T ss_dssp SSCCCCCTTSTTCCCSCHHHHHHHHHHH
T ss_pred HhcccccccCCchhhHHHHHHHHHHHhh
Confidence 4444433322355789999999999996
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=12.36 E-value=40 Score=22.57 Aligned_cols=35 Identities=6% Similarity=0.310 Sum_probs=24.4
Q ss_pred cccCcHHHHHHHHHHhcCcc---ccccccchhhhcccc
Q psy5352 237 KRADTILGVLRDIYREEGVR---QGFFKGLSMNWIKGP 271 (305)
Q Consensus 237 ~~~~~~~~~~~~i~~~eG~~---~~ly~G~~~~~~~~~ 271 (305)
+++.++-+-...++.+.|+. .+.|.|++....|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 45667777778888888863 168999998877643
Done!