RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5352
(305 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 80.8 bits (200), Expect = 3e-19
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 2 VISSLVAGGIAGALAKTTIAPLDRTKINFQI--SNSPFSFGDAINFMIKSYKTEGITSLW 59
++SL+AGGIAGA+A T PLD K Q + + ++ K YK EGI L+
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64
Query: 60 RGNSATLARIIPHGALQFTAHEQWKRILH 88
+G L R+ P A+ F +E K++L
Sbjct: 65 KGLLPNLLRVAPAAAIYFGTYETLKKLLL 93
Score = 68.0 bits (167), Expect = 1e-14
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 135 NLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDI 194
+ LAG +AG + ++TYPLD+ + R+ +++ ++ IL + I
Sbjct: 4 SFLASLLAGGIAGAIAATVTYPLDVVKTRL---------QSSAAGGSRKYKGILDCFKKI 54
Query: 195 YREEGVRQGFFKGLSMNWIK 214
Y+EEG+R G +KGL N ++
Sbjct: 55 YKEEGIR-GLYKGLLPNLLR 73
Score = 60.0 bits (146), Expect = 1e-11
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 224 FVRRRMQ-TSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYD 282
V+ R+Q +++ ++ IL + IY+EEG+R G +KGL N ++ A I F TY+
Sbjct: 28 VVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIR-GLYKGLLPNLLRVAPAAAIYFGTYE 86
Query: 283 FIYEALTK 290
+ + L K
Sbjct: 87 TLKKLLLK 94
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 74.0 bits (182), Expect = 3e-15
Identities = 74/320 (23%), Positives = 113/320 (35%), Gaps = 105/320 (32%)
Query: 7 VAGGIAGALAKTTIAPLDRTKINFQ--------ISNSPFSFGDAINFMIKSYKTEGITSL 58
+ GGI+ A++KT +AP++R K+ Q S + +N + K +G+ SL
Sbjct: 12 LMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLSL 71
Query: 59 WRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGAL 118
WRGN+A + R P A F + +K +
Sbjct: 72 WRGNTANVIRYFPTQAFNFAFKDYFKNMF------------------------------- 100
Query: 119 AKTTIAPLDRTKINFQNLYN-RFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTS 177
P K +F + L+G LAG +S I YPLD AR R+A +
Sbjct: 101 ------PKYNQKTDFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGG----- 149
Query: 178 SITKKRADTILGVLRDIYREEGVR---QGFF----------------------------K 206
+ + L I ++ G QGF K
Sbjct: 150 ---DREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDK 206
Query: 207 GLSM--NWIKGPIALTRTRF----------VRRRMQTSSITKKRADTI----LGVLRDIY 250
++ W +A T T VRRRM S K +++ L + I
Sbjct: 207 NTNILYKWA---VAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKIL 263
Query: 251 REEGVRQGFFKGLSMNWIKG 270
+ EG+ GFFKG N ++G
Sbjct: 264 KNEGL-GGFFKGAWANVLRG 282
Score = 42.8 bits (101), Expect = 1e-04
Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 64/220 (29%)
Query: 6 LVAGGIAGALAKTTIAPLD--RTKINFQI-SNSPFSFGDAINFMIKSYKTEGITSLWRGN 62
+++GG+AGA + + PLD RT++ I F + ++K K G SL++G
Sbjct: 117 ILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGF 176
Query: 63 SATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTT 122
++ II + F ++ K +L ++
Sbjct: 177 GVSVQGIIVYRGAYFGLYDSAKALLFGNDK------------------------------ 206
Query: 123 IAPLDRTKINFQNLYNRFLAGS---LAGVTSQSITYPLDLARARMAVTVKAERRMQTSSI 179
N LY +A + LAG+ I+YP D R RRM S
Sbjct: 207 ---------NTNILYKWAVAQTVTILAGL----ISYPFDTVR----------RRMMMMSG 243
Query: 180 TKKRADTI----LGVLRDIYREEGVRQGFFKGLSMNWIKG 215
K +++ L + I + EG+ GFFKG N ++G
Sbjct: 244 RKAKSEIQYTGTLDCWKKILKNEGL-GGFFKGAWANVLRG 282
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 36.8 bits (85), Expect = 0.008
Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 53/178 (29%)
Query: 5 SLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSA 64
+LV G ++G + + P+D K N Q S FSF D I L+ G
Sbjct: 6 NLVTGALSGVIVDAVLYPIDSIKTNIQAKKS-FSFSD-------------IKKLYSGILP 51
Query: 65 TLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIA 124
TL +P A + +E S KLLT +
Sbjct: 52 TLVGTVPASAFFYCFYEL------------SKKLLTEY---------------------- 77
Query: 125 PLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKK 182
R I+ NLY ++ S+A +T+ + P ++ + M V+ IT++
Sbjct: 78 ---RENISKTNLY--LISTSIAEITACIVRLPFEIVKQNMQVSGNISVLKTIYEITQR 130
Score = 31.0 bits (70), Expect = 0.61
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Query: 6 LVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNS-- 63
L++ IA A P + K N Q+S + + + + + EG+ S + G S
Sbjct: 88 LISTSIAEITACIVRLPFEIVKQNMQVSGNI----SVLKTIYEITQREGLPS-FLGKSYF 142
Query: 64 ATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTI 123
+ R IP +Q+ E K D S K + I+S + GG+AG +A
Sbjct: 143 VMIVREIPFDCIQYFLWETLKEKAKKDFGKFSKKYPS-----ITSAICGGLAGGIAGFLT 197
Query: 124 APLDRTK 130
P+D K
Sbjct: 198 TPVDVIK 204
>gnl|CDD|182245 PRK10110, PRK10110, bifunctional PTS system maltose and
glucose-specific transporter subunits IICB; Provisional.
Length = 530
Score = 28.9 bits (65), Expect = 3.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 258 GFFKGLSMNWIKGPIAVGISFATYDFIYE-ALTKFFL 293
G GLS W P+ I F Y I+ A+T+F L
Sbjct: 388 GILHGLSTKWYMVPVVAAIWFVVYYVIFRFAITRFNL 424
>gnl|CDD|227245 COG4908, COG4908, Uncharacterized protein containing a NRPS
condensation (elongation) domain [General function
prediction only].
Length = 439
Score = 28.2 bits (63), Expect = 6.2
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 15 LAKTTIAPL-DRTKIN----FQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSATLARI 69
+ I L +R +I S + I S + + I + + + AT+ I
Sbjct: 186 RKRGLIKNLIERNRITRVFPLGGSPDGPNM-SFEKTTIPSDEFKKIKAYAKVHGATINDI 244
Query: 70 IPHGALQF-----TAHEQWKRILHVDNTVDSSKLLTTFEMVISSL 109
I L+F T HE+ L +D VD K L + E IS+L
Sbjct: 245 ILAALLKFRLLYNTTHEKANNYLSIDMPVDLRKYLPSKEESISNL 289
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.390
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,497,375
Number of extensions: 1497235
Number of successful extensions: 1397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1387
Number of HSP's successfully gapped: 24
Length of query: 305
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 208
Effective length of database: 6,635,264
Effective search space: 1380134912
Effective search space used: 1380134912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)