RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5352
(305 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 201 bits (514), Expect = 1e-63
Identities = 71/337 (21%), Positives = 120/337 (35%), Gaps = 96/337 (28%)
Query: 2 VISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDA------INFMIKSYKTEGI 55
+ +AGG+A A++KT +AP++R K+ Q+ ++ I+ +++ K +G
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66
Query: 56 TSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIA 115
S WRGN A + R P AL F +++K+I
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV------------------------ 102
Query: 116 GALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQ 175
DR K ++ +G AG TS YPLD AR R+A
Sbjct: 103 -----------DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA--------D 143
Query: 176 TSSITKKRA-DTILGVLRDIYREEGVRQGFFKGLSMN----------------------- 211
+R + + I++ +G+R G ++G +++
Sbjct: 144 VGKGAAQREFTGLGNCITKIFKSDGLR-GLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202
Query: 212 --------------WIKGPIALTRTR---FVRRRMQTSSITKKRA---DTILGVLRDIYR 251
+A + VRRRM S K + R I +
Sbjct: 203 DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAK 262
Query: 252 EEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEAL 288
+EG + FFKG N ++G + YD I + +
Sbjct: 263 DEGPK-AFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 97.4 bits (243), Expect = 1e-23
Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 105/345 (30%)
Query: 6 LVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDA---------INFMIKSYKTEGIT 56
+ G A +A PLD K+ QI + ++ +TEG
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 57 SLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAG 116
SL+ G A L R + +++ ++ K+ +
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEH----------------------- 101
Query: 117 ALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQT 176
+ +R LAGS G + ++ P D+ + R + Q
Sbjct: 102 -----------------AGIGSRLLAGSTTGALAVAVAQPTDVVKVRF--------QAQA 136
Query: 177 SSITKKRADTILGVLRDIYREEGVRQGFFKGLSMN----------------WIKGPIALT 220
+ +R + + + I REEG+R G +KG S N IK +
Sbjct: 137 RAGGGRRYQSTVEAYKTIAREEGIR-GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195
Query: 221 -------RTRF-------------------VRRRMQTSSITKKRADTILGVLRDIYREEG 254
F V+ R S++ + + + R+EG
Sbjct: 196 NLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYH--SAGHCALTMLRKEG 253
Query: 255 VRQGFFKGLSMNWIK-GPIAVGISFATYDFIYEALTKFFLISHQP 298
R F+KG ++++ G V + F TY+ + AL + P
Sbjct: 254 PR-AFYKGFMPSFLRLGSWNV-VMFVTYEQLKRALMAAYQSREAP 296
Score = 70.8 bits (174), Expect = 3e-14
Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 49/201 (24%)
Query: 139 RFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREE 198
+FL A + IT+PLD A+ R+ + +++ ++T++ + R +LG + + R E
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYR--GVLGTILTMVRTE 61
Query: 199 GVRQGFFKGLSMNWIKGPIALTRTRF---------------------------------- 224
G R + GL ++ R
Sbjct: 62 GPR-SLYNGLVAGLQ-RQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAV 119
Query: 225 --------VRRRMQ--TSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAV 274
V+ R Q + +R + + + I REEG+R G +KG S N + I
Sbjct: 120 AVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR-GLWKGTSPNVARNAIVN 178
Query: 275 GISFATYDFIYEALTKFFLIS 295
TYD I + L K L++
Sbjct: 179 CAELVTYDLIKDTLLKANLMT 199
Score = 70.4 bits (173), Expect = 4e-14
Identities = 41/215 (19%), Positives = 70/215 (32%), Gaps = 55/215 (25%)
Query: 2 VISSLVAGGIAGALAKTTIAPLDRTKINFQI-SNSPFS--FGDAINFMIKSYKTEGITSL 58
+ S L+AG GALA P D K+ FQ + + + + + EGI L
Sbjct: 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163
Query: 59 WRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGAL 118
W+G S +AR + ++ K L + + + L F + AG
Sbjct: 164 WKGTSPNVARNAIVNCAELVTYDLIKDTL-LKANLMTDDLPCHF-------TSAFGAGFC 215
Query: 119 AKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSS 178
+P+D VK R S+
Sbjct: 216 TTVIASPVD---------------------------------------VVKT--RYMNSA 234
Query: 179 ITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWI 213
+ + + + R+EG R F+KG +++
Sbjct: 235 LGQYH--SAGHCALTMLRKEGPR-AFYKGFMPSFL 266
Score = 55.0 bits (133), Expect = 7e-09
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 2 VISSLVAGGIAGALAKTTIAPLD--RTKINFQISNSPFSFGDAINFMIKSYKTEGITSLW 59
+ + AG +P+D +T+ S G + + EG + +
Sbjct: 202 LPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCA---LTMLRKEGPRAFY 258
Query: 60 RGNSATLARIIPHGALQFTAHEQWKRIL 87
+G + R+ + F +EQ KR L
Sbjct: 259 KGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 4e-08
Identities = 53/340 (15%), Positives = 103/340 (30%), Gaps = 133/340 (39%)
Query: 62 NSATLAR--IIPHGALQFT----------AHEQWKRILHV-----------DNTVDSSKL 98
++ + R + HG+L+ A + ++ + D ++L
Sbjct: 2 DAYST-RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 99 LTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAG--------SLAGVTS 150
+ F +SSLV G + L F+ N +L G L
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTE----FE---NCYLEGNDIHALAAKLLQEND 113
Query: 151 QSITYPLDLAR----ARMAVTVKAERRMQTS----SITKKRADTIL-----GV------- 190
++ +L + AR + + + S ++ + A + G
Sbjct: 114 TTLVKTKELIKNYITAR-IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 191 LRDIYR-----------------EEGVRQG------FFKGLS-MNWIKGP---------- 216
LRD+Y+ E +R F +GL+ + W++ P
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 217 --------IALTRTRFVRRRMQTSS--ITKKRADTILGVLRDIYREEGVRQGFFKGLSMN 266
I + Q + +T K G LR KG + +
Sbjct: 233 SIPISCPLIGVI---------QLAHYVVTAKLLGFTPGELRSY----------LKGATGH 273
Query: 267 WIKGPI-AVGISFAT-----YDFIYEALTKFFLI---SHQ 297
+G + AV I+ + + +A+T F I ++
Sbjct: 274 -SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Score = 35.0 bits (80), Expect = 0.037
Identities = 42/214 (19%), Positives = 64/214 (29%), Gaps = 58/214 (27%)
Query: 46 MIKS-YKT-EGITSLWRGNSA----------TLARIIPHGALQFTAH---EQWKRILH-- 88
M YKT + +W N A ++ I+ + + T H E+ KRI
Sbjct: 1631 MGMDLYKTSKAAQDVW--NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 89 --------VDNTVDSSKLLTTFEMVISSLVAGGIAGALAKT--T--------IAPLDRTK 130
VD + + K+ +S G L+ T T A + K
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 131 INFQNLYNRFLAG-SL---------AGVTSQSITYPLDLARAR-MAVTVKAERRMQTSS- 178
+ AG SL A V S +++ R M + V R S
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMSIESL--VEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 179 -----ITKKRADTILG--VLRDIYREEGVRQGFF 205
I R L+ + G R G+
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 5e-05
Identities = 43/299 (14%), Positives = 85/299 (28%), Gaps = 82/299 (27%)
Query: 51 KTEGITSLWRGNSAT-LAR----IIPH-----GALQFTAHEQWKRILHVDNTVDSSKLLT 100
+ + + + L R P W HV+ KL T
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC----DKLTT 357
Query: 101 TFEMVISSLVAGGIAGALAKTTIAPLDRTKI---------------NFQNLYNRFLAGSL 145
E ++ L + ++ P I + + N+ SL
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 146 AGVTSQSITYPL-DLARARMAVTVKAERRMQTSSITKKRA------DTILGVLRDIY--- 195
+ T + + + V ++ E + S + D ++ D Y
Sbjct: 417 VEKQPKESTISIPSIYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 196 --------REEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITKKRADTILGVLR 247
E R F+ + +++ RF+ ++++ S + +IL L+
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDF----------RFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 248 DI--YR----------EEGVR--QGFFKGLSMNWIKGP------IAVGISFATYDFIYE 286
+ Y+ E V F + N I IA+ A + I+E
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL---MAEDEAIFE 581
Score = 32.1 bits (72), Expect = 0.25
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 25/112 (22%)
Query: 185 DTILGVLRDIYRE--EGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQ---TSSITKKRA 239
D G + Y++ F ++ + ++ + + S
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD---MPKSILSKEEIDHIIMSKDAVSGT 64
Query: 240 DTILGVLRDIYREEGVRQGFFKG-LSMNWIKGPIAVGISFATYDFIYEALTK 290
+ L +EE V++ F + L +N Y F+ +
Sbjct: 65 LRLFWTLLS-KQEEMVQK-FVEEVLRIN--------------YKFLMSPIKT 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.390
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,549,289
Number of extensions: 275561
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 26
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.9 bits)