RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5352
         (305 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 88.6 bits (218), Expect = 6e-21
 Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 18/289 (6%)

Query: 5   SLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINF------MIKSYKTEGITSL 58
             +AGG+A A++KT +AP++R K+  Q+ ++         +      +++  K +G  S 
Sbjct: 9   DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 68

Query: 59  WRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGAL 118
           WRGN A + R  P  AL F   +++K+I               +     +L +GG AGA 
Sbjct: 69  WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQF----WRYFAGNLASGGAAGAT 124

Query: 119 AKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLA--RARMAVTVKAERRMQT 176
           +   + PLD  +        +  A          IT        R        + + +  
Sbjct: 125 SLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIII 184

Query: 177 SSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITK 236
                         +    +   +   +    ++  + G +       VRRRM   S  K
Sbjct: 185 YRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAG-LVSYPFDTVRRRMMMQSGRK 243

Query: 237 KRADT---ILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYD 282
                    +   R I ++EG +  FFKG   N ++G +        YD
Sbjct: 244 GADIMYTGTVDCWRKIAKDEGPK-AFFKGAWSNVLRG-MGGAFVLVLYD 290


>d1sdoa_ c.52.1.21 (A:) Restriction endonuclease BstyI {Geobacillus
           stearothermophilus [TaxId: 1422]}
          Length = 203

 Score = 28.0 bits (62), Expect = 1.0
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 229 MQTSSITKKRADTILGVLRDIYR--------EEGVRQGFFKGLSMNWIKGPIAVGISFAT 280
            ++ +     AD  L                E   ++        +++K  +A+ + F  
Sbjct: 74  KESRTNYYVTADPKLIRETLSLEPEEQKKVIEAAGKEALKSYNQTDFVKDRVAIEVQFGK 133

Query: 281 YDFIYEALTKFFLISHQ 297
           Y F+   L    +  + 
Sbjct: 134 YSFVAYDLFVKHMAFYV 150


>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 85

 Score = 25.3 bits (55), Expect = 4.1
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 147 GVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYR 196
           G++ QS +  +        +T    +R Q  +IT+K  D +     D+ R
Sbjct: 32  GISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFADLSR 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,054,346
Number of extensions: 47101
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 4
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)