Query psy5355
Match_columns 76
No_of_seqs 171 out of 1076
Neff 9.4
Searched_HMMs 29240
Date Sat Aug 17 00:27:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmu_A Homeobox protein goosec 99.9 3E-24 1E-28 108.4 8.4 64 5-68 3-67 (70)
2 2cue_A Paired box protein PAX6 99.9 9.9E-25 3.4E-29 112.7 6.6 65 5-69 3-68 (80)
3 2cra_A Homeobox protein HOX-B1 99.9 2.1E-24 7.1E-29 109.0 6.5 64 5-68 3-67 (70)
4 2e1o_A Homeobox protein PRH; D 99.9 8.2E-24 2.8E-28 106.8 8.6 65 5-69 3-68 (70)
5 2dms_A Homeobox protein OTX2; 99.9 5.9E-24 2E-28 109.7 8.3 67 5-71 3-70 (80)
6 2h1k_A IPF-1, pancreatic and d 99.9 3.5E-24 1.2E-28 106.2 7.1 60 8-67 2-62 (63)
7 2da2_A Alpha-fetoprotein enhan 99.9 2.8E-24 9.6E-29 108.5 6.9 64 5-68 3-67 (70)
8 2dmt_A Homeobox protein BARH-l 99.9 3.2E-24 1.1E-28 110.7 7.2 63 6-68 14-77 (80)
9 2m0c_A Homeobox protein arista 99.9 3.9E-24 1.4E-28 109.1 7.4 69 3-71 3-72 (75)
10 2da1_A Alpha-fetoprotein enhan 99.9 3.2E-24 1.1E-28 108.2 6.5 64 5-68 3-67 (70)
11 1nk2_P Homeobox protein VND; h 99.9 1.1E-23 3.6E-28 108.1 8.4 66 3-68 3-69 (77)
12 2djn_A Homeobox protein DLX-5; 99.9 3.1E-24 1.1E-28 108.3 6.3 64 5-68 3-67 (70)
13 2dmq_A LIM/homeobox protein LH 99.9 1E-23 3.4E-28 108.8 8.2 65 5-69 3-68 (80)
14 1zq3_P PRD-4, homeotic bicoid 99.9 1.2E-23 4E-28 105.7 7.7 63 9-71 2-65 (68)
15 2vi6_A Homeobox protein nanog; 99.9 2.7E-24 9.2E-29 106.3 5.2 59 8-66 2-61 (62)
16 2da3_A Alpha-fetoprotein enhan 99.9 4.6E-24 1.6E-28 110.1 6.2 63 6-68 14-77 (80)
17 3a01_A Homeodomain-containing 99.9 1.6E-23 5.6E-28 110.8 8.3 67 5-71 13-80 (93)
18 2kt0_A Nanog, homeobox protein 99.9 7E-24 2.4E-28 110.3 6.6 64 5-68 18-82 (84)
19 2hdd_A Protein (engrailed home 99.9 7.7E-24 2.6E-28 104.3 6.2 57 9-65 3-60 (61)
20 1puf_A HOX-1.7, homeobox prote 99.9 2.4E-23 8.3E-28 106.8 8.3 62 6-67 10-72 (77)
21 1ftt_A TTF-1 HD, thyroid trans 99.9 1.9E-23 6.5E-28 104.9 7.7 63 9-71 2-65 (68)
22 2da4_A Hypothetical protein DK 99.9 1.5E-23 5.2E-28 108.2 7.5 67 3-69 2-73 (80)
23 1ig7_A Homeotic protein MSX-1; 99.9 1.7E-23 5.6E-28 102.2 7.1 56 10-65 1-57 (58)
24 1ahd_P Antennapedia protein mu 99.9 1.3E-23 4.4E-28 105.6 6.8 63 9-71 2-65 (68)
25 1yz8_P Pituitary homeobox 2; D 99.9 7.3E-24 2.5E-28 106.4 5.9 63 8-70 2-65 (68)
26 2l7z_A Homeobox protein HOX-A1 99.9 2.5E-23 8.5E-28 105.8 7.3 64 6-69 4-68 (73)
27 1jgg_A Segmentation protein EV 99.9 2.4E-23 8.1E-28 102.3 6.6 57 10-66 2-59 (60)
28 1fjl_A Paired protein; DNA-bin 99.9 3.3E-23 1.1E-27 107.1 7.5 62 6-67 15-77 (81)
29 1b8i_A Ultrabithorax, protein 99.9 1.7E-23 5.9E-28 108.2 6.3 63 5-67 16-79 (81)
30 1bw5_A ISL-1HD, insulin gene e 99.9 1.4E-23 4.6E-28 104.9 5.5 60 8-67 2-62 (66)
31 2r5y_A Homeotic protein sex co 99.9 2.6E-23 8.9E-28 109.0 6.8 62 6-67 25-87 (88)
32 2k40_A Homeobox expressed in E 99.9 4.7E-23 1.6E-27 103.2 7.1 60 10-69 2-62 (67)
33 1uhs_A HOP, homeodomain only p 99.9 1.1E-22 3.7E-27 103.1 8.1 62 10-71 2-65 (72)
34 1akh_A Protein (mating-type pr 99.9 2.9E-23 9.8E-28 102.3 5.4 59 6-64 2-61 (61)
35 2hi3_A Homeodomain-only protei 99.9 1.3E-22 4.4E-27 103.1 7.9 61 10-70 3-65 (73)
36 3a02_A Homeobox protein arista 99.9 4E-23 1.4E-27 101.5 5.7 57 12-68 2-59 (60)
37 3rkq_A Homeobox protein NKX-2. 99.9 1E-22 3.5E-27 99.3 7.0 56 9-64 2-58 (58)
38 1b72_A Protein (homeobox prote 99.9 1.1E-22 3.7E-27 108.3 7.6 63 7-69 32-95 (97)
39 1wh5_A ZF-HD homeobox family p 99.9 3.7E-23 1.3E-27 106.8 5.5 59 7-65 15-78 (80)
40 2dn0_A Zinc fingers and homeob 99.9 6.3E-23 2.1E-27 105.0 5.9 65 5-69 4-69 (76)
41 2ly9_A Zinc fingers and homeob 99.9 1.4E-22 4.7E-27 103.2 7.2 64 8-71 5-69 (74)
42 3a03_A T-cell leukemia homeobo 99.9 1.2E-22 4.1E-27 98.6 6.4 53 14-66 2-55 (56)
43 1wh7_A ZF-HD homeobox family p 99.9 2.8E-23 9.6E-28 107.2 3.9 60 5-65 13-78 (80)
44 2ecc_A Homeobox and leucine zi 99.9 2.7E-22 9.1E-27 102.3 7.4 57 11-67 5-62 (76)
45 2da5_A Zinc fingers and homeob 99.9 3.1E-22 1.1E-26 102.2 7.6 61 10-70 8-69 (75)
46 1x2n_A Homeobox protein pknox1 99.9 7.7E-22 2.6E-26 100.2 8.2 64 5-68 3-70 (73)
47 1puf_B PRE-B-cell leukemia tra 99.9 6.9E-22 2.4E-26 100.4 7.7 63 10-72 2-68 (73)
48 2cuf_A FLJ21616 protein; homeo 99.9 7.9E-22 2.7E-26 104.6 7.4 65 5-69 3-83 (95)
49 3nar_A ZHX1, zinc fingers and 99.9 3.8E-22 1.3E-26 106.0 5.9 61 7-67 23-84 (96)
50 1wi3_A DNA-binding protein SAT 99.9 2E-21 6.9E-26 96.3 6.4 57 5-61 3-61 (71)
51 1du6_A PBX1, homeobox protein 99.9 4.3E-22 1.5E-26 98.9 4.0 58 8-65 2-63 (64)
52 2dmn_A Homeobox protein TGIF2L 99.9 5.7E-21 1.9E-25 99.1 8.3 65 5-69 3-71 (83)
53 2ecb_A Zinc fingers and homeob 99.9 4.8E-21 1.7E-25 100.4 7.9 57 13-69 15-72 (89)
54 1k61_A Mating-type protein alp 99.8 2.1E-21 7.1E-26 95.3 5.8 54 13-66 2-59 (60)
55 1b72_B Protein (PBX1); homeodo 99.8 3.6E-21 1.2E-25 100.5 7.0 59 10-68 2-64 (87)
56 1au7_A Protein PIT-1, GHF-1; c 99.8 1.2E-21 4E-26 110.9 5.4 61 6-66 84-145 (146)
57 2da6_A Hepatocyte nuclear fact 99.8 1E-20 3.5E-25 100.9 8.5 64 5-68 2-87 (102)
58 1lfb_A Liver transcription fac 99.8 1.3E-21 4.5E-26 104.4 4.7 70 5-74 5-96 (99)
59 2xsd_C POU domain, class 3, tr 99.8 1.4E-21 4.9E-26 112.3 5.0 64 6-69 96-160 (164)
60 1e3o_C Octamer-binding transcr 99.8 2.4E-21 8.3E-26 110.9 5.6 60 7-66 99-159 (160)
61 3d1n_I POU domain, class 6, tr 99.8 6.9E-21 2.4E-25 108.2 6.9 60 6-65 90-150 (151)
62 1mnm_C Protein (MAT alpha-2 tr 99.8 6.4E-21 2.2E-25 99.7 6.2 58 7-64 25-86 (87)
63 2dmp_A Zinc fingers and homeob 99.8 2.2E-20 7.4E-25 98.1 8.2 59 12-70 16-75 (89)
64 3nau_A Zinc fingers and homeob 99.8 8.6E-21 2.9E-25 94.0 6.1 51 16-66 11-62 (66)
65 2l9r_A Homeobox protein NKX-3. 99.8 4.1E-21 1.4E-25 96.5 4.9 58 13-70 8-66 (69)
66 2cqx_A LAG1 longevity assuranc 99.8 2.5E-21 8.6E-26 98.1 3.8 59 9-67 8-68 (72)
67 3l1p_A POU domain, class 5, tr 99.8 1.5E-20 5E-25 107.2 7.3 60 7-66 94-154 (155)
68 1le8_B Mating-type protein alp 99.8 1.3E-20 4.3E-25 97.8 6.0 58 10-67 3-64 (83)
69 2d5v_A Hepatocyte nuclear fact 99.8 1.5E-20 5.1E-25 107.9 4.6 64 6-69 94-158 (164)
70 2e19_A Transcription factor 8; 99.8 8E-20 2.7E-24 90.7 5.7 53 13-65 7-60 (64)
71 1x2m_A LAG1 longevity assuranc 99.8 4.4E-20 1.5E-24 91.3 4.5 50 18-67 9-60 (64)
72 3k2a_A Homeobox protein MEIS2; 99.8 9.1E-19 3.1E-23 87.6 5.3 55 14-68 3-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.7 6.1E-18 2.1E-22 99.3 2.6 58 7-64 113-192 (194)
74 2da7_A Zinc finger homeobox pr 99.7 1.7E-16 5.7E-21 79.1 5.0 44 18-61 14-58 (71)
75 2h8r_A Hepatocyte nuclear fact 99.6 1.9E-16 6.5E-21 94.1 5.2 57 6-62 139-217 (221)
76 2lk2_A Homeobox protein TGIF1; 99.6 9E-16 3.1E-20 80.1 6.2 54 13-66 9-66 (89)
77 1mh3_A Maltose binding-A1 home 99.5 2.6E-15 9E-20 94.9 3.3 54 11-64 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 6.1E-10 2.1E-14 49.1 -1.1 18 51-68 1-19 (37)
79 2ys9_A Homeobox and leucine zi 97.7 4.2E-05 1.4E-09 37.8 2.9 45 14-58 11-55 (70)
80 2glo_A Brinker CG9653-PA; prot 93.9 0.081 2.8E-06 24.6 3.2 45 13-58 3-47 (59)
81 1hlv_A CENP-B, major centromer 92.6 0.59 2E-05 24.7 5.8 44 12-58 4-47 (131)
82 3hug_A RNA polymerase sigma fa 92.2 0.57 2E-05 23.4 5.3 46 16-66 38-84 (92)
83 2elh_A CG11849-PA, LD40883P; s 92.0 0.6 2.1E-05 23.2 6.8 44 10-58 17-60 (87)
84 1tc3_C Protein (TC3 transposas 91.1 0.46 1.6E-05 20.2 4.4 39 15-58 5-43 (51)
85 2o8x_A Probable RNA polymerase 91.1 0.62 2.1E-05 21.7 4.4 46 15-65 15-61 (70)
86 2jn6_A Protein CGL2762, transp 91.1 0.81 2.8E-05 23.0 5.3 42 13-58 3-45 (97)
87 1s7o_A Hypothetical UPF0122 pr 88.9 1.4 4.9E-05 23.1 5.0 46 15-65 22-68 (113)
88 3mzy_A RNA polymerase sigma-H 88.5 1.5 5E-05 23.5 5.1 29 38-66 126-155 (164)
89 1xsv_A Hypothetical UPF0122 pr 86.6 2.3 7.8E-05 22.3 5.2 45 16-65 26-71 (113)
90 1or7_A Sigma-24, RNA polymeras 86.2 2.4 8.4E-05 23.4 5.2 29 39-67 159-188 (194)
91 1jko_C HIN recombinase, DNA-in 86.1 0.79 2.7E-05 19.7 2.6 38 16-58 6-43 (52)
92 2rgt_A Fusion of LIM/homeobox 85.5 0.006 2E-07 34.5 -6.0 30 7-36 134-163 (169)
93 2rn7_A IS629 ORFA; helix, all 85.1 2.5 8.7E-05 21.5 4.7 46 13-58 4-52 (108)
94 1ku3_A Sigma factor SIGA; heli 84.3 2.2 7.6E-05 20.2 5.1 47 15-64 10-59 (73)
95 2p7v_B Sigma-70, RNA polymeras 84.1 2.2 7.4E-05 19.9 4.9 43 15-58 5-47 (68)
96 1tty_A Sigma-A, RNA polymerase 83.9 2.6 9E-05 20.7 4.3 41 15-58 18-60 (87)
97 1rp3_A RNA polymerase sigma fa 83.8 3.6 0.00012 23.4 5.3 46 16-66 188-234 (239)
98 1iuf_A Centromere ABP1 protein 83.4 3.9 0.00013 22.2 5.3 53 10-62 6-62 (144)
99 1u78_A TC3 transposase, transp 83.3 2.8 9.5E-05 22.0 4.4 40 14-58 5-44 (141)
100 1p4w_A RCSB; solution structur 81.5 3.9 0.00013 20.9 4.6 40 13-58 32-71 (99)
101 2x48_A CAG38821; archeal virus 79.7 1.4 4.8E-05 19.6 2.1 36 18-58 18-53 (55)
102 1je8_A Nitrate/nitrite respons 79.1 4.1 0.00014 19.8 5.0 39 14-58 20-58 (82)
103 1pdn_C Protein (PRD paired); p 79.1 4.4 0.00015 20.6 4.2 40 14-58 16-55 (128)
104 1rzs_A Antirepressor, regulato 78.7 1.2 4E-05 20.7 1.7 19 39-57 13-31 (61)
105 2lfw_A PHYR sigma-like domain; 78.4 2.7 9.2E-05 22.9 3.3 48 15-67 93-141 (157)
106 3c57_A Two component transcrip 77.6 5.2 0.00018 20.0 5.4 39 14-58 26-64 (95)
107 1x3u_A Transcriptional regulat 77.5 4.4 0.00015 19.2 4.3 37 16-58 17-53 (79)
108 2hin_A GP39, repressor protein 77.0 2 6.8E-05 20.9 2.2 20 39-58 13-32 (71)
109 2rnj_A Response regulator prot 75.8 5.6 0.00019 19.6 4.1 38 15-58 29-66 (91)
110 1j9i_A GPNU1 DBD;, terminase s 75.2 2.4 8.2E-05 19.9 2.3 20 39-58 5-24 (68)
111 1k78_A Paired box protein PAX5 74.4 6.7 0.00023 20.9 4.2 40 14-58 31-70 (149)
112 2jpc_A SSRB; DNA binding prote 74.1 4.1 0.00014 18.3 2.9 19 40-58 17-35 (61)
113 1fse_A GERE; helix-turn-helix 73.5 5.5 0.00019 18.4 5.7 40 13-58 9-48 (74)
114 2pmy_A RAS and EF-hand domain- 72.9 5.2 0.00018 19.4 3.3 45 14-58 19-68 (91)
115 3bd1_A CRO protein; transcript 71.6 3.1 0.00011 19.8 2.2 20 39-58 14-33 (79)
116 2jml_A DNA binding domain/tran 71.4 2.6 8.7E-05 20.6 1.9 20 39-58 8-27 (81)
117 1c07_A Protein (epidermal grow 71.2 7.7 0.00026 19.1 3.9 43 16-58 4-51 (95)
118 1fi6_A EH domain protein REPS1 71.0 7.6 0.00026 19.0 4.5 42 16-57 3-49 (92)
119 2q1z_A RPOE, ECF SIGE; ECF sig 71.0 1.4 4.8E-05 24.3 0.9 26 41-66 156-182 (184)
120 2k27_A Paired box protein PAX- 70.8 6.4 0.00022 21.4 3.6 40 14-58 24-63 (159)
121 3i5g_B Myosin regulatory light 70.8 10 0.00035 20.4 5.1 41 12-52 6-51 (153)
122 3fmy_A HTH-type transcriptiona 68.7 7.8 0.00027 18.2 4.6 38 14-58 9-46 (73)
123 2xi8_A Putative transcription 67.2 5 0.00017 17.9 2.3 20 39-58 17-36 (66)
124 2lhi_A Calmodulin, serine/thre 66.1 8.3 0.00028 21.2 3.5 39 13-51 2-45 (176)
125 2r1j_L Repressor protein C2; p 65.6 5.2 0.00018 17.9 2.2 20 39-58 21-40 (68)
126 3lsg_A Two-component response 64.8 5 0.00017 20.1 2.2 21 38-58 21-41 (103)
127 3o9x_A Uncharacterized HTH-typ 64.7 13 0.00046 19.4 4.6 20 39-58 87-106 (133)
128 1r69_A Repressor protein CI; g 64.0 5.8 0.0002 17.9 2.2 20 39-58 17-36 (69)
129 3ulq_B Transcriptional regulat 63.9 12 0.00041 18.6 4.8 41 12-58 26-66 (90)
130 2kvr_A Ubiquitin carboxyl-term 63.9 1.4 4.9E-05 23.9 -0.0 22 39-60 72-94 (130)
131 1zug_A Phage 434 CRO protein; 63.0 6.2 0.00021 17.9 2.2 20 39-58 19-38 (71)
132 3bs3_A Putative DNA-binding pr 62.7 6.4 0.00022 18.2 2.3 20 39-58 26-45 (76)
133 3omt_A Uncharacterized protein 62.3 6.5 0.00022 18.2 2.3 20 39-58 24-43 (73)
134 1r8d_A Transcription activator 61.4 6.4 0.00022 20.3 2.3 20 39-58 5-24 (109)
135 3clo_A Transcriptional regulat 61.3 22 0.00076 20.8 5.0 39 14-58 196-234 (258)
136 2b5a_A C.BCLI; helix-turn-heli 61.2 7.1 0.00024 18.1 2.3 20 39-58 26-45 (77)
137 3i9v_2 NADH-quinone oxidoreduc 61.0 11 0.00037 21.5 3.4 35 20-54 27-61 (181)
138 2vz4_A Tipal, HTH-type transcr 60.7 6.8 0.00023 20.1 2.3 20 39-58 4-23 (108)
139 2v79_A DNA replication protein 60.7 14 0.00047 20.0 3.6 40 16-58 30-73 (135)
140 1adr_A P22 C2 repressor; trans 60.7 7.1 0.00024 18.0 2.2 20 39-58 21-40 (76)
141 1y7y_A C.AHDI; helix-turn-heli 60.1 7.7 0.00026 17.7 2.3 20 39-58 29-48 (74)
142 2wiu_B HTH-type transcriptiona 58.4 11 0.00036 18.0 2.7 20 39-58 28-47 (88)
143 2k9q_A Uncharacterized protein 57.6 8.6 0.00029 18.0 2.2 20 39-58 18-37 (77)
144 2kpj_A SOS-response transcript 56.8 8.9 0.00031 18.8 2.3 20 39-58 25-44 (94)
145 3qq6_A HTH-type transcriptiona 56.6 9.4 0.00032 18.1 2.3 20 39-58 26-45 (78)
146 2ef8_A C.ECOT38IS, putative tr 56.5 9.4 0.00032 17.9 2.3 20 39-58 26-45 (84)
147 1xwr_A Regulatory protein CII; 56.2 8.5 0.00029 19.8 2.2 19 39-57 26-44 (97)
148 3b7h_A Prophage LP1 protein 11 56.1 9.7 0.00033 17.6 2.3 20 39-58 23-42 (78)
149 3f6w_A XRE-family like protein 55.0 9.9 0.00034 17.9 2.2 20 39-58 30-49 (83)
150 3oio_A Transcriptional regulat 54.9 16 0.00056 18.5 3.2 22 37-58 24-45 (113)
151 2ppx_A AGR_C_3184P, uncharacte 54.8 10 0.00034 18.9 2.3 20 39-58 46-65 (99)
152 2a6c_A Helix-turn-helix motif; 54.6 9.4 0.00032 18.3 2.1 20 39-58 34-53 (83)
153 1q06_A Transcriptional regulat 53.7 10 0.00034 20.4 2.3 20 39-58 3-22 (135)
154 1neq_A DNA-binding protein NER 53.2 9.1 0.00031 18.4 1.9 20 39-58 25-44 (74)
155 2ict_A Antitoxin HIGA; helix-t 53.0 10 0.00034 18.5 2.1 20 39-58 24-43 (94)
156 3gp4_A Transcriptional regulat 52.5 10 0.00035 20.6 2.2 20 39-58 5-24 (142)
157 3s8q_A R-M controller protein; 52.5 12 0.00041 17.6 2.3 20 39-58 27-46 (82)
158 3hh0_A Transcriptional regulat 52.2 11 0.00037 20.6 2.3 20 39-58 7-26 (146)
159 3mn2_A Probable ARAC family tr 52.1 14 0.00048 18.5 2.6 21 38-58 20-40 (108)
160 2cw1_A SN4M; lambda CRO fold, 50.7 11 0.00036 17.9 1.8 20 39-58 16-35 (65)
161 3t76_A VANU, transcriptional r 50.7 13 0.00045 18.4 2.3 20 39-58 40-59 (88)
162 1lmb_3 Protein (lambda repress 50.5 13 0.00043 17.9 2.2 20 39-58 33-52 (92)
163 2vn2_A DNAD, chromosome replic 50.2 27 0.00092 18.4 3.6 41 15-58 29-73 (128)
164 2d1h_A ST1889, 109AA long hypo 49.7 22 0.00074 17.3 3.1 41 15-58 18-58 (109)
165 2pjp_A Selenocysteine-specific 49.6 21 0.0007 18.6 3.1 21 38-58 22-42 (121)
166 3gpv_A Transcriptional regulat 49.0 13 0.00044 20.3 2.3 20 39-58 19-38 (148)
167 1zs4_A Regulatory protein CII; 48.7 13 0.00045 18.7 2.1 18 39-56 27-44 (83)
168 2ewt_A BLDD, putative DNA-bind 48.6 15 0.0005 16.6 2.2 20 39-58 24-45 (71)
169 1x57_A Endothelial differentia 48.4 14 0.00049 17.8 2.2 20 39-58 29-48 (91)
170 3eus_A DNA-binding protein; st 48.2 15 0.00051 17.7 2.3 20 39-58 30-49 (86)
171 2l49_A C protein; P2 bacteriop 48.1 15 0.00051 17.9 2.3 20 39-58 20-39 (99)
172 2pij_A Prophage PFL 6 CRO; tra 46.8 17 0.00057 16.4 2.2 20 39-58 16-35 (67)
173 3fia_A Intersectin-1; EH 1 dom 46.5 32 0.0011 18.3 4.2 44 14-57 25-73 (121)
174 2zhg_A Redox-sensitive transcr 46.3 15 0.0005 20.3 2.2 20 39-58 14-33 (154)
175 3oou_A LIN2118 protein; protei 45.6 19 0.00063 18.1 2.5 21 38-58 23-43 (108)
176 2ofy_A Putative XRE-family tra 45.2 18 0.00061 17.1 2.3 20 39-58 30-49 (86)
177 1b0n_A Protein (SINR protein); 44.9 17 0.0006 18.0 2.3 20 39-58 17-36 (111)
178 2q0o_A Probable transcriptiona 44.8 43 0.0015 19.2 5.6 39 14-58 174-212 (236)
179 3op9_A PLI0006 protein; struct 44.6 17 0.00058 18.3 2.2 20 39-58 25-44 (114)
180 1qgp_A Protein (double strande 44.5 15 0.00051 17.8 1.9 19 39-57 34-52 (77)
181 2lv7_A Calcium-binding protein 44.3 30 0.001 17.2 6.3 47 12-58 26-79 (100)
182 3i5g_C Myosin catalytic light 44.0 31 0.0011 18.5 3.4 37 15-51 2-45 (159)
183 1qbj_A Protein (double-strande 43.6 15 0.00052 18.0 1.9 20 39-58 30-49 (81)
184 3szt_A QCSR, quorum-sensing co 43.5 47 0.0016 19.2 4.6 39 14-58 174-212 (237)
185 3mlf_A Transcriptional regulat 43.1 19 0.00063 18.4 2.2 20 39-58 39-58 (111)
186 2jvl_A TRMBF1; coactivator, he 42.8 20 0.00067 18.2 2.3 20 39-58 52-71 (107)
187 1l0o_C Sigma factor; bergerat 42.4 5.3 0.00018 22.7 0.0 25 34-58 212-236 (243)
188 2opo_A Polcalcin CHE A 3; calc 42.3 27 0.00093 16.2 3.9 44 15-58 4-53 (86)
189 1tuz_A Diacylglycerol kinase a 42.2 18 0.00062 19.2 2.1 26 33-58 7-32 (118)
190 4ghj_A Probable transcriptiona 42.2 20 0.00068 18.3 2.2 20 39-58 52-71 (101)
191 3vk0_A NHTF, transcriptional r 41.8 21 0.0007 18.1 2.3 20 39-58 37-56 (114)
192 1uxc_A FRUR (1-57), fructose r 41.5 24 0.00082 16.4 2.3 20 39-58 3-22 (65)
193 3mkl_A HTH-type transcriptiona 41.2 24 0.00081 18.1 2.5 21 38-58 25-45 (120)
194 3g5g_A Regulatory protein; tra 41.2 22 0.00075 17.8 2.3 20 39-58 44-63 (99)
195 2x4h_A Hypothetical protein SS 40.6 17 0.00058 18.9 1.9 40 15-57 10-52 (139)
196 1bjf_A Neurocalcin delta; calc 39.4 42 0.0014 18.0 3.5 26 33-58 7-32 (193)
197 2eby_A Putative HTH-type trans 39.1 23 0.0008 17.8 2.2 20 39-58 27-46 (113)
198 3k2z_A LEXA repressor; winged 38.9 47 0.0016 18.6 3.7 40 16-57 3-45 (196)
199 3lfp_A CSP231I C protein; tran 38.6 25 0.00085 17.2 2.3 20 39-58 17-40 (98)
200 2fjr_A Repressor protein CI; g 37.8 27 0.00091 19.2 2.5 21 38-58 22-42 (189)
201 2ktg_A Calmodulin, putative; e 37.7 33 0.0011 15.8 4.2 45 14-58 6-57 (85)
202 3ivp_A Putative transposon-rel 37.6 26 0.00088 18.0 2.3 20 39-58 28-47 (126)
203 1l3l_A Transcriptional activat 37.6 58 0.002 18.6 6.2 40 13-58 171-210 (234)
204 2b3g_B Cellular tumor antigen 37.3 15 0.00051 14.2 1.0 13 46-58 11-23 (28)
205 3t72_q RNA polymerase sigma fa 37.1 43 0.0015 17.0 5.1 42 16-58 20-61 (99)
206 1u8b_A ADA polyprotein; protei 37.0 29 0.00099 18.1 2.5 21 38-58 95-115 (133)
207 1j7q_A CAVP, calcium vector pr 37.0 34 0.0012 15.8 4.4 45 14-58 6-60 (86)
208 1bl0_A Protein (multiple antib 36.7 31 0.0011 17.9 2.5 21 38-58 29-49 (129)
209 2jrt_A Uncharacterized protein 36.6 44 0.0015 16.9 5.4 43 12-58 29-71 (95)
210 3u0k_A Rcamp; fluorescent prot 36.5 80 0.0027 20.8 4.7 45 13-57 293-344 (440)
211 3f52_A CLP gene regulator (CLG 36.3 27 0.00092 17.6 2.2 20 39-58 44-63 (117)
212 2heo_A Z-DNA binding protein 1 36.1 22 0.00075 16.5 1.7 16 39-54 28-43 (67)
213 3cec_A Putative antidote prote 35.9 29 0.00098 17.1 2.2 20 39-58 34-53 (104)
214 2q24_A Putative TETR family tr 35.8 19 0.00063 19.5 1.6 38 19-58 19-56 (194)
215 2dk5_A DNA-directed RNA polyme 35.4 44 0.0015 16.7 3.4 43 12-57 14-57 (91)
216 2gqb_A Conserved hypothetical 35.4 56 0.0019 17.8 4.0 25 34-58 81-110 (130)
217 2l8n_A Transcriptional repress 35.1 31 0.001 16.2 2.1 20 39-58 12-31 (67)
218 2dg6_A Putative transcriptiona 35.1 27 0.00093 20.5 2.3 20 39-58 3-22 (222)
219 1y66_A Engrailed homeodomain; 35.1 5.9 0.0002 17.4 -0.4 29 30-58 18-46 (52)
220 2k9s_A Arabinose operon regula 34.8 34 0.0012 17.0 2.4 21 38-58 22-42 (107)
221 1rr7_A Middle operon regulator 34.8 26 0.00089 18.8 2.0 20 38-57 94-113 (129)
222 2d8n_A Recoverin; structural g 34.6 58 0.002 17.7 3.6 25 34-58 16-40 (207)
223 1iq3_A Ralbp1-interacting prot 34.4 24 0.00081 18.0 1.8 44 14-57 14-62 (110)
224 2hxi_A Putative transcriptiona 34.2 38 0.0013 19.5 2.9 45 13-58 26-71 (241)
225 3f3x_A Transcriptional regulat 34.0 40 0.0014 17.4 2.7 36 15-55 34-69 (144)
226 1oyi_A Double-stranded RNA-bin 33.7 24 0.00082 17.6 1.6 19 38-56 32-50 (82)
227 3r0a_A Putative transcriptiona 33.3 53 0.0018 17.0 3.3 38 15-55 23-61 (123)
228 1xn7_A Hypothetical protein YH 33.3 46 0.0016 16.1 3.2 18 39-56 19-36 (78)
229 1z67_A Hypothetical protein S4 32.9 63 0.0022 17.7 3.6 31 15-54 63-93 (135)
230 2ao9_A Phage protein; structur 32.7 34 0.0011 19.1 2.3 21 38-58 50-70 (155)
231 2joj_A Centrin protein; N-term 32.5 39 0.0013 15.1 3.7 42 16-57 1-49 (77)
232 2qwt_A Transcriptional regulat 31.8 29 0.00098 18.9 2.0 35 22-58 20-54 (196)
233 1eh2_A EPS15; calcium binding, 31.6 55 0.0019 16.6 5.1 43 15-57 8-54 (106)
234 3rmq_A Uncharacterized protein 31.2 33 0.0011 18.3 2.0 38 13-54 69-106 (116)
235 2o38_A Hypothetical protein; a 31.0 38 0.0013 17.6 2.3 20 39-58 56-75 (120)
236 2k02_A Ferrous iron transport 31.0 31 0.0011 17.3 1.8 17 39-55 19-35 (87)
237 3qao_A LMO0526 protein, MERR-l 31.0 35 0.0012 20.3 2.3 20 39-58 6-25 (249)
238 3trb_A Virulence-associated pr 30.7 39 0.0013 17.1 2.2 20 39-58 30-49 (104)
239 2jt1_A PEFI protein; solution 30.7 37 0.0013 16.5 2.0 20 38-57 26-45 (77)
240 2ovg_A Phage lambda CRO; trans 30.6 39 0.0013 15.8 2.1 19 40-58 17-35 (66)
241 1ufm_A COP9 complex subunit 4; 30.2 42 0.0014 16.6 2.2 23 36-58 30-52 (84)
242 3g3z_A NMB1585, transcriptiona 30.2 42 0.0014 17.3 2.4 40 14-57 27-66 (145)
243 3mse_B Calcium-dependent prote 30.2 68 0.0023 17.2 3.8 41 18-58 35-80 (180)
244 1sfx_A Conserved hypothetical 30.1 44 0.0015 16.1 2.4 38 16-57 18-55 (109)
245 1sfu_A 34L protein; protein/Z- 29.7 32 0.0011 16.9 1.7 16 39-54 32-47 (75)
246 1aih_A HP1 integrase; DNA inte 29.0 69 0.0024 16.9 5.9 42 12-53 3-44 (170)
247 1l9z_H Sigma factor SIGA; heli 28.8 1.2E+02 0.0042 19.7 4.8 27 38-64 397-424 (438)
248 1z4h_A TORI, TOR inhibition pr 28.4 49 0.0017 15.1 2.2 20 39-58 13-32 (66)
249 1avs_A Troponin C; muscle cont 28.4 52 0.0018 15.3 4.7 44 15-58 13-63 (90)
250 1dtl_A Cardiac troponin C; hel 28.2 67 0.0023 16.4 5.2 46 13-58 9-62 (161)
251 1ity_A TRF1; helix-turn-helix, 28.0 53 0.0018 15.2 2.8 46 6-54 3-51 (69)
252 2l2e_A Calcium-binding protein 27.8 75 0.0026 16.9 3.8 12 16-27 8-19 (190)
253 3kz3_A Repressor protein CI; f 27.6 54 0.0018 15.2 4.1 18 41-58 30-47 (80)
254 1tbx_A ORF F-93, hypothetical 27.3 50 0.0017 16.0 2.3 43 14-57 4-47 (99)
255 3c3w_A Two component transcrip 27.2 87 0.003 17.5 3.8 39 14-58 148-186 (225)
256 2kgr_A Intersectin-1; structur 26.8 68 0.0023 16.1 4.2 43 15-57 7-54 (111)
257 2htj_A P fimbrial regulatory p 26.6 55 0.0019 15.4 2.3 21 38-58 16-36 (81)
258 2lmt_A Calmodulin-related prot 26.5 45 0.0015 17.3 2.1 36 15-50 3-43 (148)
259 2ylm_A Ubiquitin carboxyl-term 26.5 12 0.00041 24.9 -0.3 23 38-60 51-74 (530)
260 1wdc_C Scallop myosin; calcium 26.5 72 0.0025 16.3 3.1 36 15-50 2-44 (156)
261 1jhf_A LEXA repressor; LEXA SO 26.4 47 0.0016 18.6 2.3 40 16-58 4-48 (202)
262 4aik_A Transcriptional regulat 26.4 80 0.0027 16.7 4.2 38 15-55 28-65 (151)
263 3fwb_A Cell division control p 26.1 73 0.0025 16.2 5.9 48 10-57 11-65 (161)
264 2rek_A Putative TETR-family tr 25.9 25 0.00084 19.0 1.0 36 21-58 22-57 (199)
265 4dyq_A Gene 1 protein; GP1, oc 25.8 50 0.0017 17.6 2.2 40 14-58 11-51 (140)
266 3bdn_A Lambda repressor; repre 25.6 37 0.0013 19.4 1.7 20 39-58 33-52 (236)
267 3plu_A Ubiquitin-like modifier 25.4 18 0.0006 18.5 0.3 20 39-58 48-67 (93)
268 3bro_A Transcriptional regulat 25.3 75 0.0026 16.1 3.6 41 15-57 31-71 (141)
269 4ets_A Ferric uptake regulatio 25.3 92 0.0031 17.1 5.1 40 14-53 29-72 (162)
270 2wus_R RODZ, putative uncharac 25.3 52 0.0018 16.9 2.1 20 39-58 23-42 (112)
271 3qp6_A CVIR transcriptional re 25.2 1.1E+02 0.0038 18.0 5.5 40 13-58 195-234 (265)
272 2l4h_A Calcium and integrin-bi 25.2 41 0.0014 18.9 1.9 25 34-58 31-55 (214)
273 3fiw_A Putative TETR-family tr 25.1 27 0.00093 19.6 1.1 46 12-58 21-67 (211)
274 3j04_B Myosin regulatory light 25.1 74 0.0025 15.9 5.2 35 16-50 1-40 (143)
275 1g8i_A Frequenin, neuronal cal 25.0 84 0.0029 16.7 3.1 25 34-58 8-32 (190)
276 3kxa_A NGO0477 protein, putati 24.9 48 0.0017 17.7 2.0 19 40-58 85-103 (141)
277 2fbh_A Transcriptional regulat 24.8 78 0.0027 16.1 2.9 40 15-57 34-73 (146)
278 3nrv_A Putative transcriptiona 24.7 47 0.0016 17.2 2.0 40 14-57 36-75 (148)
279 1r8e_A Multidrug-efflux transp 24.6 52 0.0018 19.3 2.3 20 39-58 8-27 (278)
280 1fad_A Protein (FADD protein); 24.6 46 0.0016 16.5 1.8 18 38-55 27-44 (99)
281 1on2_A Transcriptional regulat 24.3 19 0.00066 18.8 0.3 38 17-57 3-43 (142)
282 2a6h_F RNA polymerase sigma fa 24.1 94 0.0032 20.0 3.5 28 37-64 381-409 (423)
283 1irz_A ARR10-B; helix-turn-hel 24.1 68 0.0023 15.2 4.8 57 9-65 3-62 (64)
284 2kn2_A Calmodulin; S MAPK phos 24.0 66 0.0022 14.9 4.3 40 18-57 5-51 (92)
285 2lr8_A CAsp8-associated protei 29.6 17 0.00057 17.7 0.0 42 16-58 17-58 (70)
286 3fym_A Putative uncharacterize 23.7 62 0.0021 16.9 2.3 20 39-58 19-38 (130)
287 1ich_A TNF-1, tumor necrosis f 23.7 46 0.0016 17.6 1.7 32 20-54 12-43 (112)
288 2fu4_A Ferric uptake regulatio 23.4 69 0.0024 15.0 4.7 38 14-54 13-56 (83)
289 1t33_A Putative transcriptiona 23.3 37 0.0013 18.6 1.4 35 22-58 19-53 (224)
290 3eco_A MEPR; mutlidrug efflux 23.2 84 0.0029 15.9 2.9 40 15-56 28-67 (139)
291 2v57_A TETR family transcripti 23.1 49 0.0017 17.5 1.9 32 24-58 23-54 (190)
292 1ngr_A P75 low affinity neurot 23.1 62 0.0021 15.9 2.1 16 40-55 25-40 (85)
293 3klo_A Transcriptional regulat 23.0 75 0.0026 17.7 2.7 38 15-58 159-196 (225)
294 2qww_A Transcriptional regulat 23.0 65 0.0022 16.7 2.3 39 15-57 38-76 (154)
295 2l0k_A Stage III sporulation p 23.0 71 0.0024 16.0 2.3 20 39-58 23-42 (93)
296 3hot_A Transposable element ma 22.9 1.3E+02 0.0045 18.0 4.5 22 37-58 27-51 (345)
297 2qko_A Possible transcriptiona 22.8 25 0.00084 19.3 0.6 36 22-58 35-70 (215)
298 1y9q_A Transcriptional regulat 22.6 60 0.0021 17.8 2.2 20 39-58 27-46 (192)
299 1r7j_A Conserved hypothetical 22.4 62 0.0021 16.1 2.0 20 38-57 22-41 (95)
300 2bnm_A Epoxidase; oxidoreducta 22.2 64 0.0022 17.7 2.3 20 39-58 26-45 (198)
301 2nnn_A Probable transcriptiona 22.0 50 0.0017 16.7 1.7 39 15-57 35-73 (140)
302 3jsj_A Putative TETR-family tr 21.8 48 0.0016 17.6 1.6 38 19-58 13-50 (190)
303 3cmn_A Putative hydrolase; PSI 21.7 1.4E+02 0.0049 19.1 3.9 33 33-65 157-190 (372)
304 2lfc_A Fumarate reductase, fla 21.7 59 0.002 17.7 2.0 22 36-57 95-116 (160)
305 2vt3_A REX, redox-sensing tran 21.7 53 0.0018 19.1 1.9 16 40-55 37-52 (215)
306 2dt5_A AT-rich DNA-binding pro 21.6 51 0.0018 19.1 1.8 16 40-55 32-47 (211)
307 2o71_A Death domain-containing 21.6 52 0.0018 17.2 1.7 35 14-55 20-54 (115)
308 3nqo_A MARR-family transcripti 21.5 1E+02 0.0035 16.9 3.0 37 16-55 39-76 (189)
309 3bdd_A Regulatory protein MARR 21.4 74 0.0025 16.1 2.3 39 15-57 28-66 (142)
310 2yqf_A Ankyrin-1; death domain 21.4 62 0.0021 16.6 2.0 16 40-55 33-48 (111)
311 1hmj_A RPB5, protein (subunit 21.4 32 0.0011 17.0 0.8 38 15-52 14-53 (78)
312 2qvo_A Uncharacterized protein 21.2 31 0.0011 16.8 0.7 42 16-57 10-51 (95)
313 3keo_A Redox-sensing transcrip 21.2 53 0.0018 19.2 1.8 16 40-55 36-51 (212)
314 2ovk_B RLC, myosin regulatory 21.1 96 0.0033 15.8 4.2 46 12-57 6-58 (153)
315 3qrx_A Centrin; calcium-bindin 21.0 1E+02 0.0034 15.9 5.2 48 10-57 16-70 (169)
316 3oop_A LIN2960 protein; protei 20.9 46 0.0016 17.1 1.4 39 14-56 33-71 (143)
317 3o48_A Mitochondria fission 1 20.9 1.1E+02 0.0039 16.6 3.9 33 14-46 16-50 (134)
318 1zx4_A P1 PARB, plasmid partit 20.8 74 0.0025 18.3 2.3 21 38-58 26-46 (192)
319 3e7l_A Transcriptional regulat 20.6 74 0.0025 14.3 2.5 19 39-57 35-53 (63)
320 3i4p_A Transcriptional regulat 20.3 60 0.0021 17.6 1.9 17 39-55 20-36 (162)
321 1b0n_B Protein (SINI protein); 20.3 70 0.0024 14.7 1.8 17 42-58 21-37 (57)
322 1g6u_A Domain swapped dimer; d 20.2 68 0.0023 13.7 1.6 16 14-29 15-30 (48)
323 2fbi_A Probable transcriptiona 20.2 72 0.0025 16.1 2.1 39 15-57 33-71 (142)
No 1
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3e-24 Score=108.38 Aligned_cols=64 Identities=30% Similarity=0.342 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
.++..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|+|||| +|+++++...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 445678899999999999999999999999999999999999999999999999 9999998654
No 2
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.91 E-value=9.9e-25 Score=112.67 Aligned_cols=65 Identities=31% Similarity=0.396 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
.++..++.|+.|+..|+.+||..|..++||+..++..||..|||++.+|+|||| +|+++++....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 456678899999999999999999999999999999999999999999999999 99999997644
No 3
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.91 E-value=2.1e-24 Score=109.00 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
..+..++.|+.|+..|+.+||..|..++||+..++..||..|||++.+|+|||| +|+++++...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 456678899999999999999999999999999999999999999999999999 9999988653
No 4
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.91 E-value=8.2e-24 Score=106.78 Aligned_cols=65 Identities=38% Similarity=0.433 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
.++..++.|+.|+..|+.+||..|..++||+..++..||..|||++.+|++||| +|+++++....
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 345677889999999999999999999999999999999999999999999999 99999987653
No 5
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=5.9e-24 Score=109.73 Aligned_cols=67 Identities=27% Similarity=0.303 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCCc
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMTE 71 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~~ 71 (76)
.+++.++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|+|||| +|+++++......
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 346678899999999999999999999999999999999999999999999999 9999999765543
No 6
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.91 E-value=3.5e-24 Score=106.18 Aligned_cols=60 Identities=33% Similarity=0.485 Sum_probs=55.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 8 KKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 8 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
..++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||| +|+++++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 357889999999999999999999999999999999999999999999999 999999864
No 7
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=2.8e-24 Score=108.46 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||| +|+++++...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 456678899999999999999999999999999999999999999999999999 9999988654
No 8
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3.2e-24 Score=110.73 Aligned_cols=63 Identities=37% Similarity=0.517 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
..+.++.|+.|+..|+.+||..|..++||+..++..||..|||++.+|+|||| +|+++++...
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 45668889999999999999999999999999999999999999999999999 9999988654
No 9
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.91 E-value=3.9e-24 Score=109.10 Aligned_cols=69 Identities=32% Similarity=0.372 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCCc
Q psy5355 3 SDKDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMTE 71 (76)
Q Consensus 3 ~~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~~ 71 (76)
.+..+++++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||| +|+++++....+.
T Consensus 3 ~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q 72 (75)
T 2m0c_A 3 MSNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQ 72 (75)
T ss_dssp SCCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence 34566778899999999999999999999999999999999999999999999999 9999998766644
No 10
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=3.2e-24 Score=108.23 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
.....++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||| +|+++++...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 456678899999999999999999999999999999999999999999999999 9999988654
No 11
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.91 E-value=1.1e-23 Score=108.11 Aligned_cols=66 Identities=35% Similarity=0.478 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 3 SDKDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 3 ~~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
++...+.++.|+.||..|+..||..|..++||+..++..||..|||++.+|+|||| +|+++++...
T Consensus 3 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 3 DGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp SCCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 34456678889999999999999999999999999999999999999999999999 9999998643
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=108.32 Aligned_cols=64 Identities=38% Similarity=0.541 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
.++..++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||| +|+++++...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 456678899999999999999999999999999999999999999999999999 9999888543
No 13
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=108.83 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
.....++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|+|||| +|+++++....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999 99999997533
No 14
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.90 E-value=1.2e-23 Score=105.69 Aligned_cols=63 Identities=32% Similarity=0.422 Sum_probs=58.7
Q ss_pred CCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCCc
Q psy5355 9 KKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMTE 71 (76)
Q Consensus 9 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~~ 71 (76)
+++.|+.||..|+..|+..|..++||+..++..||..|||++.+|+|||| +|+++++......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 57889999999999999999999999999999999999999999999999 9999999765544
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.90 E-value=2.7e-24 Score=106.30 Aligned_cols=59 Identities=31% Similarity=0.359 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 8 KKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 8 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
+.++.|+.||..|+..||..|..++||+..++..||..+||++.+|+|||| +|+++++.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999 99999875
No 16
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.90 E-value=4.6e-24 Score=110.06 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
..+.++.|+.||..|+..|+..|..++||+..++..||..|||++.+|+|||| +|+++++...
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 45678889999999999999999999999999999999999999999999999 9999998654
No 17
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.90 E-value=1.6e-23 Score=110.76 Aligned_cols=67 Identities=39% Similarity=0.473 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCCc
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMTE 71 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~~ 71 (76)
..++.++.|+.||..|+..||..|..++||+..++..||..+||++.+|+|||| +|+++++.....+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 345678899999999999999999999999999999999999999999999999 9999999866544
No 18
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.90 E-value=7e-24 Score=110.29 Aligned_cols=64 Identities=30% Similarity=0.332 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
...+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||| +|+++++...
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 345678899999999999999999999999999999999999999999999999 9999988654
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.90 E-value=7.7e-24 Score=104.35 Aligned_cols=57 Identities=33% Similarity=0.577 Sum_probs=51.9
Q ss_pred CCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 9 KKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 9 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
.++.|+.||+.|+..||..|..++||+..++..||..+||++.+|++||| +|+++++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 57889999999999999999999999999999999999999999999999 9999886
No 20
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.90 E-value=2.4e-23 Score=106.77 Aligned_cols=62 Identities=29% Similarity=0.342 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
.+..++.|+.||..|+..||..|..++||+..++..||..|||++.+|+|||| +|+++++..
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 45677899999999999999999999999999999999999999999999999 999999864
No 21
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.90 E-value=1.9e-23 Score=104.94 Aligned_cols=63 Identities=35% Similarity=0.512 Sum_probs=58.7
Q ss_pred CCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCCc
Q psy5355 9 KKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMTE 71 (76)
Q Consensus 9 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~~ 71 (76)
.++.|+.||..|+..|+..|..++||+..++..||..|||++.+|+|||| +|+++++......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 65 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKA 65 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHhh
Confidence 46789999999999999999999999999999999999999999999999 9999999766543
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=108.17 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhcccc----CCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 3 SDKDAKKKHTRPTFSGQQIFALEKTFEQT----KYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 3 ~~~~~~~~r~R~~~t~~q~~~L~~~f~~~----~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
++..++.++.|+.||..|+.+|+..|..+ +||+..++..||..|||++.+|+|||| +|+++++....
T Consensus 2 s~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 2 SSGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 34456778899999999999999999999 999999999999999999999999999 99999986543
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.90 E-value=1.7e-23 Score=102.20 Aligned_cols=56 Identities=39% Similarity=0.572 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
++.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||| +|+++++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4689999999999999999999999999999999999999999999999 9999887
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.90 E-value=1.3e-23 Score=105.56 Aligned_cols=63 Identities=32% Similarity=0.402 Sum_probs=58.7
Q ss_pred CCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCCc
Q psy5355 9 KKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMTE 71 (76)
Q Consensus 9 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~~ 71 (76)
.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||| +|+++++......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 65 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKG 65 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccC
Confidence 46789999999999999999999999999999999999999999999999 9999999876543
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.90 E-value=7.3e-24 Score=106.43 Aligned_cols=63 Identities=29% Similarity=0.372 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCC
Q psy5355 8 KKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMT 70 (76)
Q Consensus 8 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~ 70 (76)
+.++.|+.||..|+..|+..|..++||+..++..||..|||++.+|+|||| +|+++++.....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 467889999999999999999999999999999999999999999999999 999999976644
No 26
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.89 E-value=2.5e-23 Score=105.77 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
....++.|+.|+..|+..||..|..++||+..++..||..+||++.+|+|||| +|+++++....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 34568889999999999999999999999999999999999999999999999 99999986544
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.89 E-value=2.4e-23 Score=102.28 Aligned_cols=57 Identities=33% Similarity=0.441 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
++.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||| +|++++++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999 99999874
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.89 E-value=3.3e-23 Score=107.13 Aligned_cols=62 Identities=34% Similarity=0.438 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
..+.++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||| +|++++++.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 45678899999999999999999999999999999999999999999999999 999999864
No 29
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.89 E-value=1.7e-23 Score=108.23 Aligned_cols=63 Identities=32% Similarity=0.474 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
..+..++.|+.||..|+..||..|..++||+..++..||..|||++.+|+|||| +|+++++..
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 345678899999999999999999999999999999999999999999999999 999999864
No 30
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.89 E-value=1.4e-23 Score=104.90 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 8 KKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 8 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
++++.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||| +|+++++..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 357889999999999999999999999999999999999999999999999 999988754
No 31
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.89 E-value=2.6e-23 Score=109.00 Aligned_cols=62 Identities=31% Similarity=0.437 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
.+..++.|+.|+..|+..||..|..++||+..++..||..|||++.+|+|||| +|+++++..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 45578899999999999999999999999999999999999999999999999 999998854
No 32
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=103.17 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
++.|+.||+.|+..|+..|..++||+..++..||..+||++.+|++||| +|+++++....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 6789999999999999999999999999999999999999999999999 99999886543
No 33
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.89 E-value=1.1e-22 Score=103.13 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHhccc-cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCCc
Q psy5355 10 KHTRPTFSGQQIFALEKTFEQ-TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMTE 71 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~~-~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~~ 71 (76)
.+.|+.|+..|+..|+..|.. ++||+..++..||..|||++.+|+|||| +|+++++......
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 65 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPS 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCC
Confidence 457899999999999999996 9999999999999999999999999999 9999999875543
No 34
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.89 E-value=2.9e-23 Score=102.25 Aligned_cols=59 Identities=25% Similarity=0.274 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHH
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLA 64 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~k 64 (76)
..+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||| +|++++
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 34578889999999999999999999999999999999999999999999999 888764
No 35
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.89 E-value=1.3e-22 Score=103.13 Aligned_cols=61 Identities=21% Similarity=0.142 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHhccc-cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCC
Q psy5355 10 KHTRPTFSGQQIFALEKTFEQ-TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMT 70 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~~-~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~ 70 (76)
.+.|+.||..|+.+|+..|.. ++||+..++..||..+||++.+|+|||| +|+++++.....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCC
Confidence 467899999999999999995 9999999999999999999999999999 999999987544
No 36
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.88 E-value=4e-23 Score=101.47 Aligned_cols=57 Identities=33% Similarity=0.388 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 12 TRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||| +|+++++...
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 57999999999999999999999999999999999999999999999 9999998654
No 37
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=99.25 Aligned_cols=56 Identities=39% Similarity=0.610 Sum_probs=52.9
Q ss_pred CCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHH
Q psy5355 9 KKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLA 64 (76)
Q Consensus 9 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~k 64 (76)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||| +|+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 46789999999999999999999999999999999999999999999999 898864
No 38
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.88 E-value=1.1e-22 Score=108.29 Aligned_cols=63 Identities=30% Similarity=0.364 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 7 AKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 7 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
+..++.|+.||..|+..||..|..++||+..++..||..|||++.+|+|||| +|+++++....
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 4567889999999999999999999999999999999999999999999999 99999997643
No 39
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=3.7e-23 Score=106.78 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhccc----cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 7 AKKKHTRPTFSGQQIFALEKTFEQ----TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 7 ~~~~r~R~~~t~~q~~~L~~~f~~----~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
.+.++.||.||..|+..|+..|+. ++||+..++.+||..|||++.+|+|||| +|+++++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 457889999999999999999999 9999999999999999999999999999 8888764
No 40
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6.3e-23 Score=104.98 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
....+...|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||| +|+++++....
T Consensus 4 ~~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 4 GSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp SCSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 344456679999999999999999999999999999999999999999999999 99999886543
No 41
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=103.17 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=59.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCCc
Q psy5355 8 KKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMTE 71 (76)
Q Consensus 8 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~~ 71 (76)
..++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|+|||| +|+++++......
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 456789999999999999999999999999999999999999999999999 9999998766543
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=98.57 Aligned_cols=53 Identities=45% Similarity=0.556 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
|.||..|+..|+..|..++||+..++..||..+||++.+|++||| +|++++++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999 99999985
No 43
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=2.8e-23 Score=107.17 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccc-----cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQ-----TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
...+.++.||.||..|+..|+ .|.. ++||+..++++||..|||++.+|+|||| +|+++++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345678899999999999999 7999 9999999999999999999999999999 8988764
No 44
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.88 E-value=2.7e-22 Score=102.26 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=53.4
Q ss_pred CCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 11 HTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 11 r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
..|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|+|||| +|+++|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999 999999853
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=102.17 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCC
Q psy5355 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMT 70 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~ 70 (76)
.+.|+.||..|+.+|+..|..++||+..++..||..|||++.+|+|||| +|+++++.....
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 3567889999999999999999999999999999999999999999999 999999976544
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=7.7e-22 Score=100.18 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccc---cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQ---TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
.+++.++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||| +|+++++...
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 34567888999999999999999976 9999999999999999999999999999 9999988643
No 47
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.87 E-value=6.9e-22 Score=100.36 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=58.1
Q ss_pred CCCCCCCCHHHHHHHHHhc---cccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCCcc
Q psy5355 10 KHTRPTFSGQQIFALEKTF---EQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMTES 72 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f---~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~~~ 72 (76)
++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||| +|+++++.......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccccc
Confidence 6789999999999999999 999999999999999999999999999999 99999987655443
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=7.9e-22 Score=104.60 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhC---------------CCchhHHHhhH-hHHHHHHHcC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALG---------------MTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~---------------l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
..++.++.|+.|++.|+.+||..|..++||+..+++.||..|| |++.+|++||| +|+++++...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3566788999999999999999999999999999999999999 99999999999 9999998765
Q ss_pred C
Q psy5355 69 M 69 (76)
Q Consensus 69 ~ 69 (76)
.
T Consensus 83 ~ 83 (95)
T 2cuf_A 83 I 83 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 49
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.86 E-value=3.8e-22 Score=106.03 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 7 AKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 7 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
+..++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||| +|+++|+..
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 4456789999999999999999999999999999999999999999999999 999998853
No 50
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=2e-21 Score=96.35 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccc-cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHH
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQ-TKYLAGPERAKLAYALGMTESQVKVTGP-ERA 61 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~-~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~ 61 (76)
..+.++|.||.|+.+|+..|+..|+. ++||+...++.||..+||++.+|+|||| +|-
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 35678899999999999999999999 9999999999999999999999999999 664
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.85 E-value=4.3e-22 Score=98.86 Aligned_cols=58 Identities=21% Similarity=0.144 Sum_probs=54.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhc---cccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 8 KKKHTRPTFSGQQIFALEKTF---EQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 8 ~~~r~R~~~t~~q~~~L~~~f---~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
..++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+ +|++++|
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357789999999999999999 999999999999999999999999999999 9988765
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.85 E-value=5.7e-21 Score=99.13 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccc---cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQ---TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
.+++.++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.||++||| +|+++++....
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 35567888999999999999999876 6999999999999999999999999999 99999886543
No 53
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=4.8e-21 Score=100.37 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
...||..|+.+||..|..++||+..++..||..|||++.+|+|||| +|+++++....
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999 99999885443
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.85 E-value=2.1e-21 Score=95.27 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHhccc---cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 13 RPTFSGQQIFALEKTFEQ---TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
++.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+ +|+++++.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 689999999999999999 9999999999999999999999999999 99998864
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.85 E-value=3.6e-21 Score=100.54 Aligned_cols=59 Identities=25% Similarity=0.294 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHhc---cccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 10 KHTRPTFSGQQIFALEKTF---EQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f---~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||| +|+++++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 6789999999999999999 899999999999999999999999999999 9999998654
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.85 E-value=1.2e-21 Score=110.86 Aligned_cols=61 Identities=23% Similarity=0.222 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
.+++++.|+.|+..|+..||..|..++||+..++..||..+||++.+|+|||| ||+++||.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 35567889999999999999999999999999999999999999999999999 99998874
No 57
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=100.94 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHh---------------------CCCchhHHHhhH-hHHH
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYAL---------------------GMTESQVKVTGP-ERAK 62 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l---------------------~l~~~qV~vWFq-rR~k 62 (76)
+.++.++.|+.|++.|+.+|+..|..++||+..++++||..| +|++.+|+|||| +|++
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 345678899999999999999999999999999999999999 799999999999 9999
Q ss_pred HHHHcC
Q psy5355 63 LAYALG 68 (76)
Q Consensus 63 ~kk~~~ 68 (76)
+++...
T Consensus 82 ~kr~~~ 87 (102)
T 2da6_A 82 EAFRQK 87 (102)
T ss_dssp HHHHHH
T ss_pred HHHhhH
Confidence 988653
No 58
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.84 E-value=1.3e-21 Score=104.36 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHH------------------hC---CCchhHHHhhH-hHHH
Q psy5355 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYA------------------LG---MTESQVKVTGP-ERAK 62 (76)
Q Consensus 5 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~------------------l~---l~~~qV~vWFq-rR~k 62 (76)
...+.++.|+.|++.|+..||..|..++||+..++++||.. || |++.+|+|||| +|++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34567889999999999999999999999999999999999 88 99999999999 9998
Q ss_pred HHHHcCCCcccc
Q psy5355 63 LAYALGMTESQV 74 (76)
Q Consensus 63 ~kk~~~~~~~~~ 74 (76)
.++.......++
T Consensus 85 ~k~k~~~~~~~~ 96 (99)
T 1lfb_A 85 EAFRHKLAMDTY 96 (99)
T ss_dssp TSCCC-------
T ss_pred HHHhchhhhccC
Confidence 877665554443
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.84 E-value=1.4e-21 Score=112.27 Aligned_cols=64 Identities=22% Similarity=0.122 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||| ||+++|+....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 35667889999999999999999999999999999999999999999999999 99999987654
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.84 E-value=2.4e-21 Score=110.94 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 7 AKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 7 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
++.++.|+.|+..|+..||..|..++||+..++..||..+||++.+|+|||| +|+++||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999 99999874
No 61
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.84 E-value=6.9e-21 Score=108.17 Aligned_cols=60 Identities=30% Similarity=0.364 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
.+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||| +|+++||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 45678889999999999999999999999999999999999999999999999 9999875
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.84 E-value=6.4e-21 Score=99.66 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhccc---cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHH
Q psy5355 7 AKKKHTRPTFSGQQIFALEKTFEQ---TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLA 64 (76)
Q Consensus 7 ~~~~r~R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~k 64 (76)
..+++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||| +|+++|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 446677999999999999999999 9999999999999999999999999999 998876
No 63
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=98.06 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCC
Q psy5355 12 TRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMT 70 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~ 70 (76)
.+..||..|+.+|+..|..++||+..++..||..+||++.+|+|||| +|+++++.....
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 44569999999999999999999999999999999999999999999 999998866544
No 64
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.84 E-value=8.6e-21 Score=93.99 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
-+..|+..|+..|..++||+..++.+||..+||++.+|++||| +|+++++-
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4789999999999999999999999999999999999999999 99999874
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.83 E-value=4.1e-21 Score=96.53 Aligned_cols=58 Identities=38% Similarity=0.468 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCCC
Q psy5355 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGMT 70 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~~ 70 (76)
-..+|..|+..||..|..++||+..++..||..+||++.+|+|||| ||+++++....+
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 3578999999999999999999999999999999999999999999 999998866443
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=2.5e-21 Score=98.11 Aligned_cols=59 Identities=19% Similarity=0.077 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHhc-cccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 9 KKHTRPTFSGQQIFALEKTF-EQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 9 ~~r~R~~~t~~q~~~L~~~f-~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
..+.+.+++..|+..||..| ..++||+..++..||..|||++.+|+|||| ||+++++..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 45667788999999999999 999999999999999999999999999999 999998754
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.83 E-value=1.5e-20 Score=107.25 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 7 AKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 7 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
.++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||| +|+++||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4677889999999999999999999999999999999999999999999999 99999874
No 68
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.83 E-value=1.3e-20 Score=97.80 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHhccc---cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 10 KHTRPTFSGQQIFALEKTFEQ---TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
++.+++|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||| +|+++++..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 345677999999999999999 9999999999999999999999999999 999998853
No 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.81 E-value=1.5e-20 Score=107.93 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcCC
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALGM 69 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~~ 69 (76)
.++.++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|+|||| +|++.++....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 35678899999999999999999999999999999999999999999999999 99998875443
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=8e-20 Score=90.67 Aligned_cols=53 Identities=13% Similarity=-0.022 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
+...+..|+..||..|..++||+..++..||..|||++.+|+|||| ||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3456799999999999999999999999999999999999999999 8887665
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=4.4e-20 Score=91.33 Aligned_cols=50 Identities=20% Similarity=0.024 Sum_probs=45.7
Q ss_pred HHHHHHHHHhc-cccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 18 GQQIFALEKTF-EQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 18 ~~q~~~L~~~f-~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
+.++..||..| ..++||+..++.+||..|||++.||+|||| ||+++|+..
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 45799999999 679999999999999999999999999999 999988643
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=9.1e-19 Score=87.55 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHhcc---ccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHcC
Q psy5355 14 PTFSGQQIFALEKTFE---QTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~---~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~~ 68 (76)
..|+..++.+|+..|. .++||+..++..||..+||++.||++||+ +|++.++...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 3799999999999999 99999999999999999999999999999 9999887543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.69 E-value=6.1e-18 Score=99.26 Aligned_cols=58 Identities=22% Similarity=0.164 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhC---------------------CCchhHHHhhH-hHHHHH
Q psy5355 7 AKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALG---------------------MTESQVKVTGP-ERAKLA 64 (76)
Q Consensus 7 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~---------------------l~~~qV~vWFq-rR~k~k 64 (76)
.+.+|.|+.|++.|+..|+..|..++||+..++++||..|+ |++.+|++||| ||++.+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 45688999999999999999999999999999999999999 99999999999 887765
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=79.09 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=41.8
Q ss_pred HHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHH
Q psy5355 18 GQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERA 61 (76)
Q Consensus 18 ~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~ 61 (76)
.+|+..|+.+|..+++|+..++..||..+||+.+.|+|||| +|+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 57899999999999999999999999999999999999999 665
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=94.14 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhC---------------------CCchhHHHhhH-hHHH
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALG---------------------MTESQVKVTGP-ERAK 62 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~---------------------l~~~qV~vWFq-rR~k 62 (76)
..+.+|.|+.|++.|+.+|+..|..++||+..++++||..|| |++.+|++||+ ||+.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 355688999999999999999999999999999999999988 89999999999 6653
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=80.07 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHhccc---cCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 13 RPTFSGQQIFALEKTFEQ---TKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
-..|+..+..+|+..|.. ++||+..++..||..+||++.||++||+ +|++.++.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 356899999999999976 9999999999999999999999999999 88888764
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.54 E-value=2.6e-15 Score=94.86 Aligned_cols=54 Identities=26% Similarity=0.257 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHH
Q psy5355 11 HTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLA 64 (76)
Q Consensus 11 r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~k 64 (76)
+.++.++..++..|+..|..++||+..++.+||..+||+++||+|||| ||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 346789999999999999999999999999999999999999999999 887653
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.72 E-value=6.1e-10 Score=49.12 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=15.5
Q ss_pred hhHHHhhH-hHHHHHHHcC
Q psy5355 51 SQVKVTGP-ERAKLAYALG 68 (76)
Q Consensus 51 ~qV~vWFq-rR~k~kk~~~ 68 (76)
+||+|||| ||+|+|+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 48999999 9999998654
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=4.2e-05 Score=37.85 Aligned_cols=45 Identities=18% Similarity=0.075 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
...++.-...|+++|.....+.......|+.+.+|+..||+.||-
T Consensus 11 ~~~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 11 IPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 344455568899999999999999999999999999999999996
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=93.89 E-value=0.081 Score=24.58 Aligned_cols=45 Identities=9% Similarity=0.071 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+..||++....+...+... .........+|..+|++..+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4578888776664444332 22111255889999999999999986
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=92.64 E-value=0.59 Score=24.72 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 12 TRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.|..||.++...+...+..+..+.. ..+|..+|++...|..|..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~ 47 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILK 47 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHh
Confidence 5788999998877777755544432 3679999999999999998
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=92.19 E-value=0.57 Score=23.42 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
+++.+..+|...|-... ...++|..+|++...|+.+.. -+.+.++.
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 45666666665443222 356889999999999999988 55555543
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=91.98 E-value=0.6 Score=23.24 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=31.5
Q ss_pred CCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
++.+..|+.++.......+. ... ....+|..+|++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34567899988655555553 222 245789999999999999986
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=91.15 E-value=0.46 Score=20.24 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.+++.+...+...+... . ...++|..+|++...|..|..
T Consensus 5 ~l~~~~~~~i~~~~~~g--~---s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--V---SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--C---CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHh
Confidence 56777665555555332 2 245789999999999999985
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=91.12 E-value=0.62 Score=21.69 Aligned_cols=46 Identities=20% Similarity=0.024 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
.+++.+..+|...|.... ...++|..+|++...|..+.. -+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467778888877653331 345789999999999999987 4444443
No 86
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=91.12 E-value=0.81 Score=23.02 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHhcccc-CCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 13 RPTFSGQQIFALEKTFEQT-KYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~-~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
|..||+++.......+... .. ....+|..+|++..+|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 4578888776555555332 22 255789999999999999985
No 87
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=88.90 E-value=1.4 Score=23.14 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
.+++.+..++...|.... ...++|..+|++...|+.+.. -+.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 366777777776643332 346889999999999999998 5555444
No 88
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=88.54 E-value=1.5 Score=23.49 Aligned_cols=29 Identities=17% Similarity=-0.019 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
...++|..+|++...|+.+.. -+.+.++.
T Consensus 126 s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 126 SYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999998 55555543
No 89
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=86.57 E-value=2.3 Score=22.28 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
+++.+..++...|.... ...++|..+|++...|+.+.. -+.+.+.
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 56666667666543332 346889999999999999987 4555444
No 90
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=86.24 E-value=2.4 Score=23.42 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 39 RAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
-.++|..+|++...|+.+.. -+.+.++..
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998 666666654
No 91
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=86.15 E-value=0.79 Score=19.75 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+++++...+...+... . ...++|..+|++...|..|+.
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHH
Confidence 4555554444444332 2 245789999999999999986
No 92
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=85.52 E-value=0.006 Score=34.50 Aligned_cols=30 Identities=0% Similarity=-0.142 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhccccCCCCH
Q psy5355 7 AKKKHTRPTFSGQQIFALEKTFEQTKYLAG 36 (76)
Q Consensus 7 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~ 36 (76)
...+++|+.|+..|+..|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999998864
No 93
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=85.12 E-value=2.5 Score=21.50 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHhccccC--CCC-HHHHHHHHHHhCCCchhHHHhhH
Q psy5355 13 RPTFSGQQIFALEKTFEQTK--YLA-GPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~--~p~-~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+..||+++.......+.... +++ ......+|..+|++..+|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 35688887765544442221 222 13566899999999999999986
No 94
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=84.28 E-value=2.2 Score=20.16 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHhcccc--CCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHH
Q psy5355 15 TFSGQQIFALEKTFEQT--KYLAGPERAKLAYALGMTESQVKVTGP-ERAKLA 64 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~--~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~k 64 (76)
.+++.+..+|...|-.. .-. .-.++|..+|++...|+.+.. -+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~---s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH---TLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46888888888877421 112 245789999999999999886 344443
No 95
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=84.10 E-value=2.2 Score=19.90 Aligned_cols=43 Identities=7% Similarity=0.099 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.+++.+..+|...|-.+.+- ...-.++|..+|++...|+.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHH
Confidence 46788888888887321110 11245789999999999999886
No 96
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=83.93 E-value=2.6 Score=20.73 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHhcccc--CCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 15 TFSGQQIFALEKTFEQT--KYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~--~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.+++.+..+|...|-.. .-. ...++|..+|++...|+.+..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHHHH
Confidence 46777777887776411 112 345789999999999999886
No 97
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=83.82 E-value=3.6 Score=23.41 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
+++.+..+|...|-.. ....++|..+|++...|+.+.. -+.+.++.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4555555665554322 2355789999999999999997 55555553
No 98
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=83.35 E-value=3.9 Score=22.21 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=38.5
Q ss_pred CCCCCCCCHHHHHHHHHhc-cccCCCCHHHHHHH-HHHh--CCCchhHHHhhHhHHH
Q psy5355 10 KHTRPTFSGQQIFALEKTF-EQTKYLAGPERAKL-AYAL--GMTESQVKVTGPERAK 62 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f-~~~~~p~~~~~~~L-a~~l--~l~~~qV~vWFqrR~k 62 (76)
++.|..+|.+|...+..++ +.++..+..+.... ...+ +++..+|.-|..++..
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5678999999999999999 77776655443221 2277 7888889999874333
No 99
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=83.25 E-value=2.8 Score=22.02 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..++.++...+...+... . ...++|..+|++...|.-|+.
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~---s~~~ia~~lgis~~Tv~r~~~ 44 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--V---SLHEMSRKISRSRHCIRVYLK 44 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--C---CHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHH
Confidence 467787777666666433 1 245789999999999999997
No 100
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=81.53 E-value=3.9 Score=20.94 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
...+++.+..+|...+.-. ...++|..+|++...|+.+..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ 71 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKK 71 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 4568999999987765322 236889999999999998875
No 101
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=79.73 E-value=1.4 Score=19.58 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 18 GQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 18 ~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+.+...+...+... + ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 45555444444322 1 345789999999999998874
No 102
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=79.14 E-value=4.1 Score=19.81 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..+++.+..+|...+... ...++|..+|++...|+.+..
T Consensus 20 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 20 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp GGSCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 458888888887754221 355889999999999998875
No 103
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=79.13 E-value=4.4 Score=20.64 Aligned_cols=40 Identities=5% Similarity=0.014 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..++.++...+...+... .+ ...+|..+|++...|..|+.
T Consensus 16 ~~~s~~~r~~i~~~~~~g--~s---~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAADG--IR---PCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp SCCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHH
Confidence 357777766666655432 22 35689999999999999997
No 104
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=78.68 E-value=1.2 Score=20.68 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCchhHHHhh
Q psy5355 39 RAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWF 57 (76)
...||..+|++...|.-|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4579999999999999996
No 105
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=78.36 E-value=2.7 Score=22.87 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHHHc
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAYAL 67 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk~~ 67 (76)
.+++.+..+|.-.|-.. ..-.++|..+|+++..|+.... -|.+.++..
T Consensus 93 ~Lp~~~r~vl~L~~~~g-----~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEG-----FSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TSCTTHHHHHTTTSSSC-----CCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 35555555554433222 2356889999999999999998 566655543
No 106
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=77.55 E-value=5.2 Score=20.04 Aligned_cols=39 Identities=18% Similarity=0.064 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..+++.+..+|...+... ...++|..+|++...|+.+..
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~ 64 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 357888888887763332 245789999999999999886
No 107
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=77.46 E-value=4.4 Score=19.15 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+++.+..+|...+... ...++|..+|++...|+.+..
T Consensus 17 L~~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~~~ 53 (79)
T 1x3u_A 17 LSERERQVLSAVVAGL------PNKSIAYDLDISPRTVEVHRA 53 (79)
T ss_dssp HCHHHHHHHHHHTTTC------CHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 4666777776643222 245789999999999998876
No 108
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=76.99 E-value=2 Score=20.89 Aligned_cols=20 Identities=25% Similarity=0.097 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..||++...|.-|..
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHh
Confidence 56899999999999999975
No 109
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=75.77 E-value=5.6 Score=19.59 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.+++.+..+|...+.-. ...++|..+|++...|+.+..
T Consensus 29 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~ 66 (91)
T 2rnj_A 29 MLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVS 66 (91)
T ss_dssp GCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 46777878877653322 234789999999999998886
No 110
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=75.24 E-value=2.4 Score=19.93 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..||++...|.-|-.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35789999999999999986
No 111
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=74.43 E-value=6.7 Score=20.94 Aligned_cols=40 Identities=8% Similarity=-0.018 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..++.++...+...+... . ....+|..+|++...|.-|+.
T Consensus 31 ~~~s~e~r~~iv~~~~~G--~---s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG--V---RPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT--C---CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHH
Confidence 467887766666666432 2 245689999999999999996
No 112
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=74.10 E-value=4.1 Score=18.26 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=16.9
Q ss_pred HHHHHHhCCCchhHHHhhH
Q psy5355 40 AKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 40 ~~La~~l~l~~~qV~vWFq 58 (76)
.++|..+|+++..|+.+..
T Consensus 17 ~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 4789999999999998876
No 113
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=73.48 E-value=5.5 Score=18.42 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
-..+++.+..+|...+... ...++|..+|++...|..+..
T Consensus 9 ~~~L~~~e~~il~~~~~g~------s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 9 KPLLTKREREVFELLVQDK------TTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHH
Confidence 4568899999888753222 345789999999999998886
No 114
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=72.86 E-value=5.2 Score=19.41 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..++..+...|...|. .+.+.+..+...+...+|++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3467778888888874 34578888888888889999888888875
No 115
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=71.57 E-value=3.1 Score=19.79 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 14 q~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 45899999999999999987
No 116
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=71.40 E-value=2.6 Score=20.58 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999953
No 117
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=71.24 E-value=7.7 Score=19.13 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 16 FSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 16 ~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
++..+...+...|. .+.+.+..+...+...+|++...+..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45677777888773 34578888888888888998888776663
No 118
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=70.99 E-value=7.6 Score=18.99 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhccc-----cCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 16 FSGQQIFALEKTFEQ-----TKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
++..+...+...|.. +.+.+..+...+...+|++...+.-.|
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 577888888888753 447888888887788898887776555
No 119
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=70.96 E-value=1.4 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=19.7
Q ss_pred HHHHHhCCCchhHHHhhH-hHHHHHHH
Q psy5355 41 KLAYALGMTESQVKVTGP-ERAKLAYA 66 (76)
Q Consensus 41 ~La~~l~l~~~qV~vWFq-rR~k~kk~ 66 (76)
++|..+|++...|+.+.. -+.+.++.
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 567788999999999998 55555543
No 120
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=70.81 E-value=6.4 Score=21.36 Aligned_cols=40 Identities=8% Similarity=-0.031 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..++.++...+...+... . ....+|..+|++...|..|+.
T Consensus 24 ~~~s~e~r~~ii~l~~~G--~---s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG--V---RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT--C---CHHHHHHHHTCCSHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHH
Confidence 467887776666666432 2 244679999999999999996
No 121
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=70.76 E-value=10 Score=20.36 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCCchh
Q psy5355 12 TRPTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMTESQ 52 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~~~q 52 (76)
.+..+|..|+..|...|. .+.+.+..+...+...+|..+..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 456799999999999984 35588999888888888866543
No 122
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=68.74 E-value=7.8 Score=18.18 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..++...+..+....... ..+||..+|++...|.-|=.
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHT
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHc
Confidence 357777777776544332 45789999999999999876
No 123
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=67.19 E-value=5 Score=17.91 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 17 ~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45799999999999999986
No 124
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=66.12 E-value=8.3 Score=21.23 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCCch
Q psy5355 13 RPTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMTES 51 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~~~ 51 (76)
++.+|.+|+..|...|. .+.+.+..+...+...+|+.+.
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 46789999999998874 3557888888888888886554
No 125
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=65.57 E-value=5.2 Score=17.95 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 21 ~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHc
Confidence 45799999999999999986
No 126
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=64.82 E-value=5 Score=20.09 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
....||..+|+++..+.-.|+
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFK 41 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456789999999988877775
No 127
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=64.67 E-value=13 Score=19.40 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|-.
T Consensus 87 q~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHC
Confidence 34788999999999998876
No 128
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=63.97 E-value=5.8 Score=17.88 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 17 q~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999986
No 129
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=63.89 E-value=12 Score=18.59 Aligned_cols=41 Identities=10% Similarity=0.176 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 12 TRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.-..+|+.+..+|.-.+.-. ...++|..||++...|+....
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 34578999999988776322 356789999999999988764
No 130
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=63.89 E-value=1.4 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCchhHHHhhH-hH
Q psy5355 39 RAKLAYALGMTESQVKVTGP-ER 60 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq-rR 60 (76)
...+|..+|++..+++.|+- +|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 56789999999999999997 54
No 131
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=62.97 E-value=6.2 Score=17.90 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 19 q~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHc
Confidence 45789999999999999986
No 132
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=62.66 E-value=6.4 Score=18.16 Aligned_cols=20 Identities=20% Similarity=0.166 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 26 ~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45799999999999999986
No 133
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=62.34 E-value=6.5 Score=18.18 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|..
T Consensus 24 q~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45799999999999999986
No 134
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=61.37 E-value=6.4 Score=20.25 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...++.|=.
T Consensus 5 i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35789999999999999854
No 135
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=61.35 E-value=22 Score=20.85 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..+++.+..+|.-.++.. .-.++|..||++...|++...
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ 234 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQ 234 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 357888888877754222 345789999999999999876
No 136
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=61.17 E-value=7.1 Score=18.05 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 26 q~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHC
Confidence 45789999999999999986
No 137
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=60.96 E-value=11 Score=21.53 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=26.2
Q ss_pred HHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHH
Q psy5355 20 QIFALEKTFEQTKYLAGPERAKLAYALGMTESQVK 54 (76)
Q Consensus 20 q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~ 54 (76)
-+..|...=+...|.+......+|..|+|+...|.
T Consensus 27 li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 27 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 34444444344579999999999999999998764
No 138
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=60.72 E-value=6.8 Score=20.14 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...++.|=.
T Consensus 4 i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35789999999999999864
No 139
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=60.72 E-value=14 Score=20.00 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhcc----ccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 16 FSGQQIFALEKTFE----QTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 16 ~t~~q~~~L~~~f~----~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+|..++..|...+. .+.+|+.. .||..+|++...|.-..+
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~ 73 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLR 73 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHH
Confidence 56677777666654 24567664 689999999999887775
No 140
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=60.66 E-value=7.1 Score=17.95 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 21 ~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999986
No 141
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=60.08 E-value=7.7 Score=17.72 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 29 ~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHC
Confidence 45789999999999999986
No 142
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=58.39 E-value=11 Score=17.98 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 28 q~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHc
Confidence 45789999999999999987
No 143
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=57.58 E-value=8.6 Score=17.98 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 18 q~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHc
Confidence 45799999999999998876
No 144
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=56.79 E-value=8.9 Score=18.78 Aligned_cols=20 Identities=10% Similarity=0.214 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 25 q~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHh
Confidence 45789999999999999986
No 145
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=56.57 E-value=9.4 Score=18.10 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 26 q~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999888865
No 146
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=56.45 E-value=9.4 Score=17.95 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|..
T Consensus 26 q~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHc
Confidence 45799999999999999987
No 147
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=56.22 E-value=8.5 Score=19.85 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCchhHHHhh
Q psy5355 39 RAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWF 57 (76)
...+|..+|+++.+|-.|=
T Consensus 26 q~~vA~~iGV~~StISR~k 44 (97)
T 1xwr_A 26 TEKTAEAVGVDKSQISRWK 44 (97)
T ss_dssp HHHHHHHHTCCTTTHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4578999999999999873
No 148
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=56.05 E-value=9.7 Score=17.59 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 23 q~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999986
No 149
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=54.96 E-value=9.9 Score=17.92 Aligned_cols=20 Identities=35% Similarity=0.315 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|-.
T Consensus 30 q~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHC
Confidence 35789999999999998876
No 150
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=54.93 E-value=16 Score=18.46 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCchhHHHhhH
Q psy5355 37 PERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 37 ~~~~~La~~l~l~~~qV~vWFq 58 (76)
.....||..+||++..+.--|.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk 45 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFK 45 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 3456789999999988777764
No 151
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=54.79 E-value=10 Score=18.86 Aligned_cols=20 Identities=0% Similarity=-0.016 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|-.
T Consensus 46 q~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHhCcCHHHHHHHHc
Confidence 35789999999999999976
No 152
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=54.60 E-value=9.4 Score=18.28 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|..
T Consensus 34 q~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45799999999999999987
No 153
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=53.71 E-value=10 Score=20.39 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...++.|=.
T Consensus 3 I~e~A~~~gvs~~tLR~ye~ 22 (135)
T 1q06_A 3 ISDVAKITGLTSKAIRFYEE 22 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35789999999999999854
No 154
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=53.20 E-value=9.1 Score=18.36 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|..|..
T Consensus 25 ~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45799999999999998875
No 155
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=53.01 E-value=10 Score=18.51 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 24 q~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHc
Confidence 45789999999999999987
No 156
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=52.53 E-value=10 Score=20.60 Aligned_cols=20 Identities=5% Similarity=0.076 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...|+.|=.
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~ 24 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYER 24 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999864
No 157
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=52.46 E-value=12 Score=17.61 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 27 q~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHhCcCHHHHHHHHC
Confidence 45789999999999998876
No 158
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=52.16 E-value=11 Score=20.62 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...++.|=.
T Consensus 7 I~evA~~~Gvs~~tLR~ye~ 26 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYDK 26 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999864
No 159
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=52.13 E-value=14 Score=18.50 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
....||..+||++..+.--|.
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk 40 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQ 40 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 355788999998888777664
No 160
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=50.70 E-value=11 Score=17.88 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...+|..||++...|.-|-.
T Consensus 16 q~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 16 QEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp HHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 45789999999999999875
No 161
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=50.68 E-value=13 Score=18.42 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|..
T Consensus 40 q~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45799999999999998886
No 162
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=50.51 E-value=13 Score=17.92 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 33 q~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999886
No 163
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=50.25 E-value=27 Score=18.39 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhccc----cCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 15 TFSGQQIFALEKTFEQ----TKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~----~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.++..+..+|...+.. ..+|+. ..||..+|++...|..-.+
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~---~~LA~~l~~s~~~V~~~l~ 73 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTP---AELAERMTVSAAECMEMVR 73 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCH---HHHHHTSSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHH
Confidence 4677777777666542 345644 4689999999998776553
No 164
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=49.66 E-value=22 Score=17.32 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.+++.+...|......+..+ ...+||..+|++...|.--..
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~---t~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPI---TSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCE---EHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCC---CHHHHHHHHCcCHHHHHHHHH
Confidence 35677777777766533333 345789999999988766543
No 165
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=49.56 E-value=21 Score=18.62 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
....|+..+|+++..+.-|+.
T Consensus 22 ~~~~la~~~~~~~~~~~~~l~ 42 (121)
T 2pjp_A 22 WVRDLAKETGTDEQAMRLTLR 42 (121)
T ss_dssp EHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 344799999999999999886
No 166
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=49.03 E-value=13 Score=20.33 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...|+.|=.
T Consensus 19 I~evA~~~gvs~~tLR~Ye~ 38 (148)
T 3gpv_A 19 IGQVAKMQHLTISQIRYYDK 38 (148)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 55789999999999999864
No 167
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=48.69 E-value=13 Score=18.66 Aligned_cols=18 Identities=33% Similarity=0.328 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCchhHHHh
Q psy5355 39 RAKLAYALGMTESQVKVT 56 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vW 56 (76)
...+|..+|+++.+|--|
T Consensus 27 Q~~vAe~~GvdeStISR~ 44 (83)
T 1zs4_A 27 TEKTAEAVGVDKSQISRW 44 (83)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred hHHHHHHhCCCHHHHhhh
Confidence 357899999999999886
No 168
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=48.57 E-value=15 Score=16.60 Aligned_cols=20 Identities=5% Similarity=-0.233 Sum_probs=17.1
Q ss_pred HHHHHHHhC--CCchhHHHhhH
Q psy5355 39 RAKLAYALG--MTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~--l~~~qV~vWFq 58 (76)
...||..+| ++...|.-|-.
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHCCcCCHHHHHHHHC
Confidence 457899999 99999998876
No 169
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=48.35 E-value=14 Score=17.78 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|..
T Consensus 29 q~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999986
No 170
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=48.21 E-value=15 Score=17.69 Aligned_cols=20 Identities=30% Similarity=0.205 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|-.
T Consensus 30 q~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHhCcCHHHHHHHHC
Confidence 34789999999999988875
No 171
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=48.13 E-value=15 Score=17.92 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 20 q~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999986
No 172
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=46.77 E-value=17 Score=16.36 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...+|..+|++...|.-|..
T Consensus 16 ~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999998875
No 173
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=46.54 E-value=32 Score=18.28 Aligned_cols=44 Identities=7% Similarity=0.253 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHhccc----cCCCCHHHHHHHHHHhCCCchhHH-Hhh
Q psy5355 14 PTFSGQQIFALEKTFEQ----TKYLAGPERAKLAYALGMTESQVK-VTG 57 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~----~~~p~~~~~~~La~~l~l~~~qV~-vWF 57 (76)
-.+|+++...+...|.. +.+.+..+...+-...||+...+. ||=
T Consensus 25 W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~ 73 (121)
T 3fia_A 25 WAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWA 73 (121)
T ss_dssp SCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45789999999998853 446778887777778899887754 663
No 174
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=46.32 E-value=15 Score=20.28 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...|+.|=.
T Consensus 14 i~e~A~~~gvs~~TLR~ye~ 33 (154)
T 2zhg_A 14 PGEVAKRSGVAVSALHFYES 33 (154)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999954
No 175
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=45.61 E-value=19 Score=18.06 Aligned_cols=21 Identities=5% Similarity=-0.094 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
....||..+||++..+.-.|.
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk 43 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQ 43 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 455788899998888777764
No 176
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=45.24 E-value=18 Score=17.13 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 30 q~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHc
Confidence 45899999999999998886
No 177
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=44.86 E-value=17 Score=18.01 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 17 q~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999988875
No 178
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=44.76 E-value=43 Score=19.22 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..+|+.+..+|.-...-. .-.++|..||+++..|+....
T Consensus 174 ~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~ 212 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLD 212 (236)
T ss_dssp GSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 468888888886654322 245789999999999998775
No 179
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=44.64 E-value=17 Score=18.34 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 25 q~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999986
No 180
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=44.53 E-value=15 Score=17.76 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCchhHHHhh
Q psy5355 39 RAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWF 57 (76)
..+||..||++...|.-..
T Consensus 34 ~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 34 AHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4578999999999877654
No 181
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=44.31 E-value=30 Score=17.23 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhC--CCchhHHHhhH
Q psy5355 12 TRPTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALG--MTESQVKVTGP 58 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~--l~~~qV~vWFq 58 (76)
....++..++..|...|. .+.+.+..+...+...+| ++...|..+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345688889999988873 456899999988888887 56667777774
No 182
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=44.00 E-value=31 Score=18.50 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHhccc-------cCCCCHHHHHHHHHHhCCCch
Q psy5355 15 TFSGQQIFALEKTFEQ-------TKYLAGPERAKLAYALGMTES 51 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~-------~~~p~~~~~~~La~~l~l~~~ 51 (76)
.+|..|+..|...|.. +.+.+..+...+...||+.+.
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCC
Confidence 4789999999988742 346777777777788886543
No 183
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=43.61 E-value=15 Score=18.04 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=15.8
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..||++...|.-...
T Consensus 30 ~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34789999999998876653
No 184
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=43.48 E-value=47 Score=19.22 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..+|+.+..+|.-...-. ...++|..||+++..|+.-..
T Consensus 174 ~~Lt~re~~vl~~~~~G~------s~~eIa~~l~is~~tV~~~~~ 212 (237)
T 3szt_A 174 VRLTARETEMLKWTAVGK------TYGEIGLILSIDQRTVKFHIV 212 (237)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHH
Confidence 467777777776543222 245789999999999887654
No 185
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=43.14 E-value=19 Score=18.43 Aligned_cols=20 Identities=5% Similarity=0.122 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|-.
T Consensus 39 q~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHC
Confidence 45789999999999999886
No 186
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=42.77 E-value=20 Score=18.16 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 52 q~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYER 71 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45799999999999999986
No 187
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=42.38 E-value=5.3 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 34 LAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 34 p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.......++|..+|++...|+.+..
T Consensus 212 ~~g~s~~EIA~~lgis~~tV~~~~~ 236 (243)
T 1l0o_C 212 YKDQTQSEVASRLGISQVQMSRLEK 236 (243)
T ss_dssp -------------------------
T ss_pred hcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344556889999999999988875
No 188
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=42.28 E-value=27 Score=16.16 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhC-CCchhHHHhhH
Q psy5355 15 TFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALG-MTESQVKVTGP 58 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~-l~~~qV~vWFq 58 (76)
.+++.+...|...|. .+.+.+..+...+...+| ++...|...|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 467777888888773 344677777777666666 55556666663
No 189
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=42.22 E-value=18 Score=19.22 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 33 YLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 33 ~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.++..+...|...+..+...|+.|+.
T Consensus 7 ~lspe~l~~L~~~t~fs~~elk~~y~ 32 (118)
T 1tuz_A 7 LISPSDFAQLQKYMEYSTKKVSDVLK 32 (118)
T ss_dssp CSCHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred cCCHHHHHHHHHHcccCHHHHHHHHH
Confidence 45777788888888889999999975
No 190
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=42.18 E-value=20 Score=18.26 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|=.
T Consensus 52 Q~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 52 QSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC
Confidence 45789999999998887754
No 191
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=41.76 E-value=21 Score=18.15 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|-.
T Consensus 37 q~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999998876
No 192
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=41.55 E-value=24 Score=16.43 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|--++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 35789999999999998887
No 193
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=41.20 E-value=24 Score=18.06 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
....||..+||++..+.-.|.
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 25 TLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp CHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456789999999988777663
No 194
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=41.16 E-value=22 Score=17.76 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|-.
T Consensus 44 q~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHC
Confidence 45789999999999988876
No 195
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=40.63 E-value=17 Score=18.92 Aligned_cols=40 Identities=15% Similarity=0.007 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhccc---cCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 15 TFSGQQIFALEKTFEQ---TKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~---~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
.++..+...|...+.. +..+ ....||..+|++...|.--.
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~---s~~ela~~l~is~~tv~~~l 52 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGA---KINRIAKDLKIAPSSVFEEV 52 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCB---CHHHHHHHHTCCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCCc---CHHHHHHHhCCChHHHHHHH
Confidence 4677888887766542 2223 34578999999998776544
No 196
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=39.35 E-value=42 Score=17.99 Aligned_cols=26 Identities=15% Similarity=-0.001 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 33 YLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 33 ~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.++..+...|+..++++..+|+-||.
T Consensus 7 ~l~~~~l~~l~~~~~~~~~~i~~~f~ 32 (193)
T 1bjf_A 7 KLRPEVMQDLLESTDFTEHEIQEWYK 32 (193)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34555666777778888888888886
No 197
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=39.06 E-value=23 Score=17.76 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 27 q~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 27 INELAELLHVHRNSVSALIN 46 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999998876
No 198
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=38.87 E-value=47 Score=18.61 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHhc---cccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 16 FSGQQIFALEKTF---EQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 16 ~t~~q~~~L~~~f---~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
+|..|..+|+-.. ....+|. ...+||..+|++...|.-+.
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~--s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPP--SVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHcCCCcHHHHHHH
Confidence 5777888777764 3444542 24478999999987665544
No 199
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=38.64 E-value=25 Score=17.20 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCchh----HHHhhH
Q psy5355 39 RAKLAYALGMTESQ----VKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~q----V~vWFq 58 (76)
..+||..+|++... |.-|-.
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchhhhHHHHHHC
Confidence 45789999999998 888876
No 200
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=37.80 E-value=27 Score=19.25 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
...+||..+|++...|.-|..
T Consensus 22 tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHHh
Confidence 456899999999999999987
No 201
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=37.71 E-value=33 Score=15.77 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhC--CCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALG--MTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~--l~~~qV~vWFq 58 (76)
..++..+...|...|. .+.+.+..+...+...+| ++...+...|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4578888888888884 344678888877777777 45556666663
No 202
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=37.64 E-value=26 Score=18.02 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 28 q~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHC
Confidence 45789999999999999986
No 203
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=37.61 E-value=58 Score=18.64 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
...+|+.+..+|.-...-. .-.++|..||+++..|+....
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~ 210 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGK------TMEEIADVEGVKYNSVRVKLR 210 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 4568999988886654222 345789999999999998775
No 204
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=37.31 E-value=15 Score=14.22 Aligned_cols=13 Identities=8% Similarity=0.000 Sum_probs=10.2
Q ss_pred hCCCchhHHHhhH
Q psy5355 46 LGMTESQVKVTGP 58 (76)
Q Consensus 46 l~l~~~qV~vWFq 58 (76)
|-|++..|..||-
T Consensus 11 lmlspddi~qw~s 23 (28)
T 2b3g_B 11 LMLSPDDIEQWFT 23 (28)
T ss_dssp GGCCHHHHHHHHH
T ss_pred hhcChHHHHHHhh
Confidence 5578888899984
No 205
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=37.14 E-value=43 Score=16.97 Aligned_cols=42 Identities=7% Similarity=0.125 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+++.+..++.-.|-.+.. ....-.++|..+|++...|+....
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 566666677666642210 112345789999999999998776
No 206
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=37.02 E-value=29 Score=18.06 Aligned_cols=21 Identities=14% Similarity=0.002 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
....||..+|+++..+.-.|+
T Consensus 95 sl~~lA~~~g~S~~~f~r~Fk 115 (133)
T 1u8b_A 95 TLEALADQVAMSPFHLHRLFK 115 (133)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456899999999988888885
No 207
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=36.97 E-value=34 Score=15.81 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCC--Cchh---HHHhhH
Q psy5355 14 PTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGM--TESQ---VKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l--~~~q---V~vWFq 58 (76)
..+++.++..|...|. .+.+.+..+...+...+|. +... |..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4567778888888873 3457888888888888874 4455 556553
No 208
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=36.68 E-value=31 Score=17.89 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
....||..+|++...+.--|.
T Consensus 29 sl~~lA~~~~~S~~~l~r~fk 49 (129)
T 1bl0_A 29 SLEKVSERSGYSKWHLQRMFK 49 (129)
T ss_dssp CCHHHHHHSSSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456789999998887766664
No 209
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=36.62 E-value=44 Score=16.93 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 12 TRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.+..++......+-....... . ...++|...+|+..+|..|-.
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~-~---s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGL-I---TEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTS-S---CHHHHHHHTTCCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHcCC-C---CHHHHHHHhCCCHHHHHHHHH
Confidence 445688876443333333222 1 245789999999999999974
No 210
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=36.48 E-value=80 Score=20.79 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCC--chhHHHhh
Q psy5355 13 RPTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMT--ESQVKVTG 57 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~--~~qV~vWF 57 (76)
+..++++|+..|...|. .+.+++..+...+...+|+. ...|..-|
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 66899999999999984 45688888888888888754 44555444
No 211
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=36.27 E-value=27 Score=17.64 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 44 q~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELER 63 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHC
Confidence 35789999999999998876
No 212
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=36.13 E-value=22 Score=16.51 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=12.4
Q ss_pred HHHHHHHhCCCchhHH
Q psy5355 39 RAKLAYALGMTESQVK 54 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~ 54 (76)
..+||..+|++...|.
T Consensus 28 ~~eLA~~lglsr~tv~ 43 (67)
T 2heo_A 28 IFQLVKKCQVPKKTLN 43 (67)
T ss_dssp HHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 3479999999987644
No 213
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=35.88 E-value=29 Score=17.15 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|..
T Consensus 34 q~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999988876
No 214
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=35.75 E-value=19 Score=19.49 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 19 QQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 19 ~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.-+..-...|....| . .....||...|++...|-..|.
T Consensus 19 ~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~ 56 (194)
T 2q24_A 19 KILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFP 56 (194)
T ss_dssp HHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcC
Confidence 344455566777777 4 6778999999999999999997
No 215
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=35.43 E-value=44 Score=16.65 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHhcccc-CCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 12 TRPTFSGQQIFALEKTFEQT-KYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~~~-~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
.-..+++.|..+|...+... .-. ....|+..++|+..+|..=.
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi---~qkeLa~~~~l~~~tvt~iL 57 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGI---WSRDVRYKSNLPLTEINKIL 57 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCE---EHHHHHHHTTCCHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCc---CHHHHHHHHCCCHHHHHHHH
Confidence 34578899999998888632 222 34578999999998876433
No 216
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=35.39 E-value=56 Score=17.79 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHhCCCc-----hhHHHhhH
Q psy5355 34 LAGPERAKLAYALGMTE-----SQVKVTGP 58 (76)
Q Consensus 34 p~~~~~~~La~~l~l~~-----~qV~vWFq 58 (76)
.+...|.+||..||++. .+..||..
T Consensus 81 sSl~~RkeLA~eL~~~~~~~dSA~mNiwLH 110 (130)
T 2gqb_A 81 SSLSARKELAKELGYSGDMNDSASMNIWLH 110 (130)
T ss_dssp CSHHHHHHHHHHHTCCCSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCCccHHHHHHHH
Confidence 57789999999999884 45778996
No 217
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=35.14 E-value=31 Score=16.17 Aligned_cols=20 Identities=10% Similarity=-0.009 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|--++.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHc
Confidence 56789999999999988886
No 218
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=35.10 E-value=27 Score=20.53 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...|+.|=.
T Consensus 3 IgevA~~~Gvs~~TLRyYE~ 22 (222)
T 2dg6_A 3 LADLSKRSGVSTATIKYYLR 22 (222)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35789999999999999965
No 219
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=35.09 E-value=5.9 Score=17.44 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=21.2
Q ss_pred ccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 30 QTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 30 ~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
...-.+.+...+.|..|||...-|..+|.
T Consensus 18 rhqeitqetlheyaqklglnqqaieqffr 46 (52)
T 1y66_A 18 RHQEITQETLHEYAQKLGLNQQAIEQFFR 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 33344555667789999999888888885
No 220
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=34.80 E-value=34 Score=16.99 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
....||..+||+...+.--|.
T Consensus 22 ~~~~lA~~~~~S~~~l~r~fk 42 (107)
T 2k9s_A 22 DIASVAQHVCLSPSRLSHLFR 42 (107)
T ss_dssp CHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 455788889988887766664
No 221
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=34.79 E-value=26 Score=18.78 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCchhHHHhh
Q psy5355 38 ERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWF 57 (76)
...+||.+.|||+.+|.-=.
T Consensus 94 n~~eLArkYgLSer~I~~Ii 113 (129)
T 1rr7_A 94 NVSELTTRYGVTFNTVYKAI 113 (129)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
Confidence 45689999999999765433
No 222
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=34.62 E-value=58 Score=17.75 Aligned_cols=25 Identities=12% Similarity=0.000 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 34 LAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 34 p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
++..+...+...++++..+|..+|.
T Consensus 16 l~~~el~~~~~~~~~~~~~i~~~f~ 40 (207)
T 2d8n_A 16 LSKEILEELQLNTKFSEEELCSWYQ 40 (207)
T ss_dssp CCHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444444555555555555555554
No 223
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=34.42 E-value=24 Score=18.03 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 14 PTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
-.++..+...+...|. .+.+.+..+...+...+|++...|.-+|
T Consensus 14 ~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~ 62 (110)
T 1iq3_A 14 WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIW 62 (110)
T ss_dssp CCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3566777777777763 2457788887777777788887777655
No 224
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=34.18 E-value=38 Score=19.49 Aligned_cols=45 Identities=22% Similarity=0.083 Sum_probs=29.4
Q ss_pred CCCCCHHH-HHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 13 RPTFSGQQ-IFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 13 R~~~t~~q-~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+...+... +..-...|....|-.. ....||..+|++...|-..|.
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~ 71 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAETF-SVRKLAASLGTDSSSLYRHFR 71 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCCC-CHHHHHHHTTSCHHHHHHHTS
T ss_pred chhhHHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCcCHHHHHHHcC
Confidence 34455543 3344555666665433 355789999999999999997
No 225
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=33.97 E-value=40 Score=17.38 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~v 55 (76)
.++..+..+|........ ....||..+|++...|..
T Consensus 34 ~lt~~~~~iL~~l~~~~~-----~~~~la~~l~~~~~tvs~ 69 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-----SMVYLANRYFVTQSAITA 69 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-----EHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC-----CHHHHHHHHCCChhHHHH
Confidence 467778888877654332 455789999999887654
No 226
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=33.69 E-value=24 Score=17.57 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCchhHHHh
Q psy5355 38 ERAKLAYALGMTESQVKVT 56 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vW 56 (76)
.-.+||..||++...|.-=
T Consensus 32 sa~eLAk~LgiSk~aVr~~ 50 (82)
T 1oyi_A 32 TAAQLTRQLNMEKREVNKA 50 (82)
T ss_dssp EHHHHHHHSSSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 3458999999999877643
No 227
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=33.33 E-value=53 Score=16.95 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHhccccCC-CCHHHHHHHHHHhCCCchhHHH
Q psy5355 15 TFSGQQIFALEKTFEQTKY-LAGPERAKLAYALGMTESQVKV 55 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~-p~~~~~~~La~~l~l~~~qV~v 55 (76)
.+++.+..+|......... .+ ..+||..++++...|.-
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t---~~eLa~~l~~s~sTV~r 61 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWID---TDALSKSLKLDVSTVQR 61 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEE---HHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcC---HHHHHHHHCcCHHHHHH
Confidence 4677777777776644321 33 34689999998877643
No 228
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=33.29 E-value=46 Score=16.15 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=14.2
Q ss_pred HHHHHHHhCCCchhHHHh
Q psy5355 39 RAKLAYALGMTESQVKVT 56 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vW 56 (76)
..+||..+++++..|+-=
T Consensus 19 v~eLa~~l~VS~~TIRrd 36 (78)
T 1xn7_A 19 AAQISQTLNTPQPMINAM 36 (78)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 347899999999887643
No 229
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=32.87 E-value=63 Score=17.66 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVK 54 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~ 54 (76)
.++++++..+ ........||.++|+++..+.
T Consensus 63 pIs~~ql~~~---------lG~~~l~~lA~q~Gl~~~~~~ 93 (135)
T 1z67_A 63 SVSGEQLESA---------LGTNAVSDLGQKLGVDTSTAS 93 (135)
T ss_dssp CCCHHHHHHH---------HCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHH---------HChHHHHHHHHHHCcCHHHHH
Confidence 4566665444 234567889999999997754
No 230
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=32.66 E-value=34 Score=19.14 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
...++|..+|++...+..|-.
T Consensus 50 Tv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 50 TQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 456889999999999999976
No 231
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=32.53 E-value=39 Score=15.09 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCC--chhHHHhh
Q psy5355 16 FSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMT--ESQVKVTG 57 (76)
Q Consensus 16 ~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~--~~qV~vWF 57 (76)
+++.+...|...|. .+.+.+..+...+...+|.. ...|...|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35667777777773 34467777777777777754 34455555
No 232
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=31.80 E-value=29 Score=18.86 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=27.3
Q ss_pred HHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 22 FALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 22 ~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..-...|....| . .....||...|++...|-..|.
T Consensus 20 ~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~ 54 (196)
T 2qwt_A 20 EVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFP 54 (196)
T ss_dssp HHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCC
Confidence 334455777776 4 5677899999999999999997
No 233
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=31.64 E-value=55 Score=16.55 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhccc----cCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 15 TFSGQQIFALEKTFEQ----TKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~----~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
.++..+...+...|.. +.+.+..+...+...+|++...+.-.+
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3677888888888743 457888888777788898887776544
No 234
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=31.22 E-value=33 Score=18.26 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHH
Q psy5355 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVK 54 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~ 54 (76)
+.-|++.++..|-..|.= +......||..|+++...|-
T Consensus 69 ~~G~p~~eI~~l~~~f~w----~~~~~~~l~~~l~~t~~~~~ 106 (116)
T 3rmq_A 69 ALGWPMREISDLAHRFDW----SPALITRLAEVLHCSFGEVV 106 (116)
T ss_dssp HTTCCHHHHHHHHTTSCC----CHHHHHHHHHHSCSCHHHHH
T ss_pred hcCCCHHHhhhhhhhhcC----CHHHHHHHHHHhcCcchhee
Confidence 456788888888777753 44677889999999887653
No 235
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=31.04 E-value=38 Score=17.62 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|..
T Consensus 56 Q~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 56 QAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999988876
No 236
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=31.02 E-value=31 Score=17.27 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCchhHHH
Q psy5355 39 RAKLAYALGMTESQVKV 55 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~v 55 (76)
..+||..+++++..|+-
T Consensus 19 v~eLA~~l~VS~~TIRr 35 (87)
T 2k02_A 19 AKQLSARLQTPQPLIDA 35 (87)
T ss_dssp HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 45789999999988764
No 237
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=30.96 E-value=35 Score=20.31 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...++.|=.
T Consensus 6 I~evA~~~gvs~~TLRyYe~ 25 (249)
T 3qao_A 6 IKELAELTGVSVRTLHHYDK 25 (249)
T ss_dssp HHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999998854
No 238
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=30.69 E-value=39 Score=17.09 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|-.
T Consensus 30 q~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999888876
No 239
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=30.66 E-value=37 Score=16.47 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCchhHHHhh
Q psy5355 38 ERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWF 57 (76)
...+||..+|++...|.--.
T Consensus 26 sv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 26 KTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp EHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
Confidence 34578999999988776544
No 240
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=30.55 E-value=39 Score=15.79 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.2
Q ss_pred HHHHHHhCCCchhHHHhhH
Q psy5355 40 AKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 40 ~~La~~l~l~~~qV~vWFq 58 (76)
..+|..||++..-|--|-.
T Consensus 17 t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 17 TKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 4689999999999988864
No 241
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=30.19 E-value=42 Score=16.55 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCchhHHHhhH
Q psy5355 36 GPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 36 ~~~~~~La~~l~l~~~qV~vWFq 58 (76)
......||..++|++..|..|..
T Consensus 30 ~Isl~~La~ll~ls~~~vE~~ls 52 (84)
T 1ufm_A 30 NITFEELGALLEIPAAKAEKIAS 52 (84)
T ss_dssp EEEHHHHHHHTTSCHHHHHHHHH
T ss_pred eeeHHHHHHHHCcCHHHHHHHHH
Confidence 33567899999999999887764
No 242
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=30.19 E-value=42 Score=17.33 Aligned_cols=40 Identities=5% Similarity=-0.024 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
.-++..|..+|.......+ . ...+||..+|++...|..-.
T Consensus 27 ~~lt~~q~~iL~~l~~~~~-~---t~~eLa~~l~~~~~tvs~~l 66 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGS-R---TQKHIGEKWSLPKQTVSGVC 66 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCS-B---CHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCC-C---CHHHHHHHHCCCHHHHHHHH
Confidence 3468888888877765543 2 34578999999988766433
No 243
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=30.16 E-value=68 Score=17.15 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 18 GQQIFALEKTFE-----QTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 18 ~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..++..|...|. .+.+.+..+...+...+|+++..+...|.
T Consensus 35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~ 80 (180)
T 3mse_B 35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQ 80 (180)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 556667777763 34578888888888888888777766664
No 244
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=30.08 E-value=44 Score=16.09 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
+++.+..+|.......+ . ...+||..+|++...|..-.
T Consensus 18 l~~~~~~il~~l~~~~~-~---s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGG-M---RVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp CCHHHHHHHHHHHHHCC-B---CHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-C---CHHHHHHHHCCCHHHHHHHH
Confidence 56777777766644222 2 24578999999998776544
No 245
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=29.69 E-value=32 Score=16.91 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=13.0
Q ss_pred HHHHHHHhCCCchhHH
Q psy5355 39 RAKLAYALGMTESQVK 54 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~ 54 (76)
-..||.+||++...|.
T Consensus 32 a~~IAkkLg~sK~~vN 47 (75)
T 1sfu_A 32 AISLSNRLKINKKKIN 47 (75)
T ss_dssp HHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHCCCHHHHH
Confidence 4578999999998765
No 246
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=29.00 E-value=69 Score=16.92 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhH
Q psy5355 12 TRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQV 53 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV 53 (76)
....++.+++..|...+.....+.......|+..+||-...|
T Consensus 3 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E~ 44 (170)
T 1aih_A 3 ELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEA 44 (170)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHH
T ss_pred ccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHHH
Confidence 346789999999988887665555555566777788766553
No 247
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=28.77 E-value=1.2e+02 Score=19.71 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCchhHHHhhH-hHHHHH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP-ERAKLA 64 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq-rR~k~k 64 (76)
...++|..+|++...|+.... -+.+.+
T Consensus 397 TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 397 TLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 456899999999999998886 444444
No 248
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=28.45 E-value=49 Score=15.12 Aligned_cols=20 Identities=5% Similarity=-0.124 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+++..||++...|.-|-.
T Consensus 13 ~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 13 LKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp HHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34678889999988777764
No 249
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=28.43 E-value=52 Score=15.32 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCC--CchhHHHhhH
Q psy5355 15 TFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGM--TESQVKVTGP 58 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l--~~~qV~vWFq 58 (76)
.++..++..|...|. .+.+.+..+...+...+|. +...|...|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467888888888874 3457888888877777774 4556666663
No 250
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=28.16 E-value=67 Score=16.45 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHhcc-----c-cCCCCHHHHHHHHHHhC--CCchhHHHhhH
Q psy5355 13 RPTFSGQQIFALEKTFE-----Q-TKYLAGPERAKLAYALG--MTESQVKVTGP 58 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~-----~-~~~p~~~~~~~La~~l~--l~~~qV~vWFq 58 (76)
-..+++.++..|...|. . +.+.+..+...+...+| ++...+..+|.
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34678889988888884 2 45788888887777777 45555666663
No 251
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=27.97 E-value=53 Score=15.23 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCC---CchhHH
Q psy5355 6 DAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGM---TESQVK 54 (76)
Q Consensus 6 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l---~~~qV~ 54 (76)
...+++.+..+|+++-..|...........-. .+|..+++ +..|++
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~---~Ia~~~~~~~Rt~~qcr 51 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWS---KILLHYKFNNRTSVMLK 51 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHH---HHHHHSCCSSCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHH---HHHHHcCcCCCCHHHHH
Confidence 34567778899999999888877654322232 45666653 444544
No 252
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=27.82 E-value=75 Score=16.91 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHh
Q psy5355 16 FSGQQIFALEKT 27 (76)
Q Consensus 16 ~t~~q~~~L~~~ 27 (76)
++..++..|...
T Consensus 8 l~~~el~~~~~~ 19 (190)
T 2l2e_A 8 LSQDQLQDLVRS 19 (190)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 455555544444
No 253
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=27.65 E-value=54 Score=15.17 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=10.6
Q ss_pred HHHHHhCCCchhHHHhhH
Q psy5355 41 KLAYALGMTESQVKVTGP 58 (76)
Q Consensus 41 ~La~~l~l~~~qV~vWFq 58 (76)
+||..+|++...|.-|..
T Consensus 30 ~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 30 SVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHHHHTTSCHHHHHHHHT
T ss_pred HHHHHhCcCHHHHHHHHc
Confidence 456666666666665554
No 254
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=27.34 E-value=50 Score=15.99 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHH-HHHHHHhCCCchhHHHhh
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPER-AKLAYALGMTESQVKVTG 57 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~-~~La~~l~l~~~qV~vWF 57 (76)
..++..|..+|....... ..+..+. ..||..++++...|..-.
T Consensus 4 ~~lt~~q~~iL~~l~~~~-~~~~~el~~~la~~l~is~~tvs~~l 47 (99)
T 1tbx_A 4 TPFFYPEAIVLAYLYDNE-GIATYDLYKKVNAEFPMSTATFYDAK 47 (99)
T ss_dssp CSSBCHHHHHHHHHTTCT-TCBHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-CcCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 346778888888776532 2333222 222888999998876544
No 255
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=27.18 E-value=87 Score=17.45 Aligned_cols=39 Identities=21% Similarity=0.109 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..+|+.+..+|.-.... . ...++|..++++...|++...
T Consensus 148 ~~LT~rE~~vL~~l~~g---~---s~~eIa~~l~is~~TV~~hi~ 186 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG---L---TNKQIADRMFLAEKTVKNYVS 186 (225)
T ss_dssp TTSCHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCC---C---CHHHHHHHhCCCHHHHHHHHH
Confidence 35788887777665443 1 356789999999999998775
No 256
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=26.84 E-value=68 Score=16.12 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 15 TFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
.++..+...|...|. .+.+.+..+...+....+++...|...|
T Consensus 7 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 7 AVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIW 54 (111)
T ss_dssp SSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 467777788877774 2446777777666666677777666555
No 257
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=26.58 E-value=55 Score=15.37 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
...+||..+|++...|.-...
T Consensus 16 s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 16 KTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 345789999999998876664
No 258
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=26.54 E-value=45 Score=17.29 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCCc
Q psy5355 15 TFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMTE 50 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~~ 50 (76)
-+|..|+..|...|. .+.+.+..+...+...+|..+
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~ 43 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNP 43 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCc
Confidence 478889999988873 344666777766666776554
No 259
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=26.48 E-value=12 Score=24.88 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCchhHHHhhH-hH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP-ER 60 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq-rR 60 (76)
-...+|..+|++..+++.|.- +|
T Consensus 51 l~~~va~~lg~~~~~~RlW~~~~R 74 (530)
T 2ylm_A 51 FVQSLSQTMGFPQDQIRLWPMQAR 74 (530)
T ss_dssp HHHHHHHHHTSCGGGEEEEEEEEC
T ss_pred HHHHHHHHhCcCcccEEEEEEEcC
Confidence 357889999999999999997 55
No 260
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=26.46 E-value=72 Score=16.28 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHhcc-------ccCCCCHHHHHHHHHHhCCCc
Q psy5355 15 TFSGQQIFALEKTFE-------QTKYLAGPERAKLAYALGMTE 50 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~-------~~~~p~~~~~~~La~~l~l~~ 50 (76)
.+++.++..|...|. .+.+.+..+...+...+|+..
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~ 44 (156)
T 1wdc_C 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINP 44 (156)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 467778887877763 233566666666666666543
No 261
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=26.44 E-value=47 Score=18.56 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHhc---cccCCC-CHHHHHHHHHHhCCC-chhHHHhhH
Q psy5355 16 FSGQQIFALEKTF---EQTKYL-AGPERAKLAYALGMT-ESQVKVTGP 58 (76)
Q Consensus 16 ~t~~q~~~L~~~f---~~~~~p-~~~~~~~La~~l~l~-~~qV~vWFq 58 (76)
+|+.|...++..- ....++ + ..+||..+|++ ...|..|..
T Consensus 4 lt~~q~~i~~~i~~~~~~~g~~ps---~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 4 LTARQQEVFDLIRDHISQTGMPPT---RAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCC---HHHHHHHTTCSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCcc---HHHHHHHhCCCChHHHHHHHH
Confidence 5666666555443 334442 3 44789999999 889999986
No 262
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=26.38 E-value=80 Score=16.74 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~v 55 (76)
-+|..|..+|.......+..+ ..+||..++++...|..
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~---~~eLa~~l~~~~~tvs~ 65 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQS---QIQLAKAIGIEQPSLVR 65 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSC---HHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCc---HHHHHHHHCcCHHHHHH
Confidence 478888888877765444333 24689999999887654
No 263
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=26.14 E-value=73 Score=16.24 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=34.8
Q ss_pred CCCCCCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCC--CchhHHHhh
Q psy5355 10 KHTRPTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGM--TESQVKVTG 57 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l--~~~qV~vWF 57 (76)
......+++.++..|...|. .+.+.+..+...+...+|+ +...+...|
T Consensus 11 ~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 11 GPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34567899999999999985 3457888888877777774 444555555
No 264
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=25.90 E-value=25 Score=19.02 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 21 IFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 21 ~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+..-...|....| . .....||...|++...|-..|.
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~ 57 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFP 57 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCC
Confidence 3344555777777 4 4677899999999999999987
No 265
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=25.76 E-value=50 Score=17.64 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCC-CchhHHHhhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGM-TESQVKVTGP 58 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l-~~~qV~vWFq 58 (76)
+.|+++....++....... ....++...|| +...|-.|..
T Consensus 11 tk~t~e~~e~I~~~i~~G~-----sl~~i~~~~~~ps~~T~~~W~~ 51 (140)
T 4dyq_A 11 SDYMPEVADDICSLLSSGE-----SLLKVCKRPGMPDKSTVFRWLA 51 (140)
T ss_dssp CSCCTTHHHHHHHHHHTTC-----CHHHHHTSTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC-----cHHHHHhcCCCCCHHHHHHHHH
Confidence 5788888887777776543 34567888999 7889999986
No 266
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=25.63 E-value=37 Score=19.37 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|..
T Consensus 33 ~~~lA~~~gis~~~i~~~~~ 52 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999987
No 267
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=25.40 E-value=18 Score=18.53 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
++.++.+.|++..+.+.+|.
T Consensus 48 K~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 48 KKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp HHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHhCCCHHHEEEEeC
Confidence 46789999999999888886
No 268
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=25.33 E-value=75 Score=16.08 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
-++..+..+|.........+ ....+||..++++...|..-.
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~--~~~~ela~~l~~~~~tvs~~l 71 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKE--VLQRDLESEFSIKSSTATVLL 71 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSC--CBHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCC--cCHHHHHHHHCCCcchHHHHH
Confidence 47788888887776554212 234578999999988776543
No 269
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.28 E-value=92 Score=17.06 Aligned_cols=40 Identities=8% Similarity=0.001 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHh----CCCchhH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYAL----GMTESQV 53 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l----~l~~~qV 53 (76)
.++|+....+|+.......+++..+.......- +++...|
T Consensus 29 ~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTV 72 (162)
T 4ets_A 29 LKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATV 72 (162)
T ss_dssp CCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHH
Confidence 467888899998888877889999886544433 4555544
No 270
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=25.28 E-value=52 Score=16.92 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|=.
T Consensus 23 q~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 23 LLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHC
Confidence 45789999999888877765
No 271
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=25.22 E-value=1.1e+02 Score=18.03 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 13 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
...+|+.+..+|.-...-. ...++|..||+++..|+....
T Consensus 195 ~~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV~~~~~ 234 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSRGK------TNWEIATILNISERTVKFHVA 234 (265)
T ss_dssp CCCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 3578898888887764322 345789999999999988765
No 272
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=25.20 E-value=41 Score=18.88 Aligned_cols=25 Identities=12% Similarity=0.014 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 34 LAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 34 p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
++..+...|...++++..+|+.||.
T Consensus 31 l~~e~l~~l~~~t~~s~~ei~~l~~ 55 (214)
T 2l4h_A 31 LSKELLAEYQDLTFLTKQEILLAHR 55 (214)
T ss_dssp CCHHHHHHHHSCCSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5667777888888899999988886
No 273
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=25.15 E-value=27 Score=19.62 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=28.7
Q ss_pred CCCCCCHHH-HHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 12 TRPTFSGQQ-IFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 12 ~R~~~t~~q-~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.+...+... +..-...|....|- ......||..+|++...|-..|.
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~ 67 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFR 67 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCS
T ss_pred cccccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcC
Confidence 344455543 33445556665543 22355789999999999999987
No 274
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=25.10 E-value=74 Score=15.92 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHhccc-----cCCCCHHHHHHHHHHhCCCc
Q psy5355 16 FSGQQIFALEKTFEQ-----TKYLAGPERAKLAYALGMTE 50 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~La~~l~l~~ 50 (76)
|+..++..|...|.. +.+.+..+...+...+|+..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 40 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNP 40 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCC
Confidence 577888888888852 45788888877777777544
No 275
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=24.99 E-value=84 Score=16.66 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 34 LAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 34 p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
++..+...|...++++..+|+.+|.
T Consensus 8 l~~~~l~~l~~~~~~~~~~i~~~f~ 32 (190)
T 1g8i_A 8 LKPEVVEELTRKTYFTEKEVQQWYK 32 (190)
T ss_dssp CCHHHHHHHHHTSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHccCCCHHHHHHHHH
Confidence 3445555666666777777777775
No 276
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=24.89 E-value=48 Score=17.70 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.4
Q ss_pred HHHHHHhCCCchhHHHhhH
Q psy5355 40 AKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 40 ~~La~~l~l~~~qV~vWFq 58 (76)
.+||..+|++...|.-|..
T Consensus 85 ~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 85 SELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHc
Confidence 4689999999999988886
No 277
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=24.75 E-value=78 Score=16.09 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
-++..+..+|...+...... ....||..+|++...|..-.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~---t~~~la~~l~~s~~~vs~~l 73 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSP---TQRELAQSVGVEGPTLARLL 73 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCC---BHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCC---CHHHHHHHhCCChhhHHHHH
Confidence 36677777777663333322 34578999999998876544
No 278
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=24.73 E-value=47 Score=17.16 Aligned_cols=40 Identities=13% Similarity=0.011 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
..++..+..+|....... .. ...+||..+|++...|..-.
T Consensus 36 ~~l~~~~~~iL~~l~~~~-~~---t~~ela~~l~~~~~tvs~~l 75 (148)
T 3nrv_A 36 FGIGMTEWRIISVLSSAS-DC---SVQKISDILGLDKAAVSRTV 75 (148)
T ss_dssp GTCCHHHHHHHHHHHHSS-SB---CHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCC-CC---CHHHHHHHHCCCHHHHHHHH
Confidence 368889998888776544 22 23468999999998776543
No 279
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=24.57 E-value=52 Score=19.29 Aligned_cols=20 Identities=0% Similarity=-0.007 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..++|..+|++...++.|=.
T Consensus 8 i~e~a~~~gvs~~tlr~y~~ 27 (278)
T 1r8e_A 8 IGEVSKLANVSIKALRYYDK 27 (278)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999998853
No 280
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=24.57 E-value=46 Score=16.55 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCchhHHH
Q psy5355 38 ERAKLAYALGMTESQVKV 55 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~v 55 (76)
.=..||..||++...|..
T Consensus 27 ~Wk~Lar~Lg~~~~~I~~ 44 (99)
T 1fad_A 27 DWKRLARELKVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHH
Confidence 345789999999877654
No 281
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=24.35 E-value=19 Score=18.81 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=22.9
Q ss_pred CHHHHHHHHHhcc---ccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 17 SGQQIFALEKTFE---QTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 17 t~~q~~~L~~~f~---~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
+..+...|...+. .+..++ ...||..+|++...|.--.
T Consensus 3 s~~~~~~L~~i~~l~~~~~~~~---~~ela~~l~vs~~tvs~~l 43 (142)
T 1on2_A 3 TPSMEMYIEQIYMLIEEKGYAR---VSDIAEALAVHPSSVTKMV 43 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCC---HHHHHHHHTSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhcCCCC---HHHHHHHhCCCHHHHHHHH
Confidence 4455555555543 233333 3478999999998776544
No 282
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=24.13 E-value=94 Score=19.95 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCchhHHHhhH-hHHHHH
Q psy5355 37 PERAKLAYALGMTESQVKVTGP-ERAKLA 64 (76)
Q Consensus 37 ~~~~~La~~l~l~~~qV~vWFq-rR~k~k 64 (76)
....++|..+|++...|+.... -+.+.+
T Consensus 381 ~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 381 HTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp ---CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3456899999999999999887 444444
No 283
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=24.08 E-value=68 Score=15.15 Aligned_cols=57 Identities=12% Similarity=0.027 Sum_probs=35.4
Q ss_pred CCCCCCCCCHHHHHHHHHhccc-c-CCCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 9 KKHTRPTFSGQQIFALEKTFEQ-T-KYLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 9 ~~r~R~~~t~~q~~~L~~~f~~-~-~~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
.+++|-++|++.-......... . ...++....++-..-||+..+|+.=.| -|...+|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4567888998755544444332 2 123344444555556899999999999 6766554
No 284
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=23.96 E-value=66 Score=14.94 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=22.4
Q ss_pred HHHHHHHHHhc---c--ccCCCCHHHHHHHHHHhC--CCchhHHHhh
Q psy5355 18 GQQIFALEKTF---E--QTKYLAGPERAKLAYALG--MTESQVKVTG 57 (76)
Q Consensus 18 ~~q~~~L~~~f---~--~~~~p~~~~~~~La~~l~--l~~~qV~vWF 57 (76)
..+...|...| . .+.+.+..+...+...+| ++...|...|
T Consensus 5 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 51 (92)
T 2kn2_A 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMI 51 (92)
T ss_dssp CHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34445555555 2 234677777766666666 4455555555
No 285
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=29.55 E-value=17 Score=17.70 Aligned_cols=42 Identities=14% Similarity=-0.002 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
+|.+.-..+...|+... ++...-..||..||=++.||..=|+
T Consensus 17 WTReeDR~IL~~cq~~G-~s~~tfa~iA~~Lnks~~QV~~RF~ 58 (70)
T 2lr8_A 17 WTRNDDRVILLECQKRG-PSSKTFAYLAAKLDKNPNQVSERFQ 58 (70)
Confidence 44444445555555433 3334456789999999999998886
No 286
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=23.74 E-value=62 Score=16.93 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=15.8
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
.++||..+|++...|.-|=.
T Consensus 19 q~elA~~~gis~~~is~iE~ 38 (130)
T 3fym_A 19 LTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp HHHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHC
Confidence 45789999999988877755
No 287
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=23.66 E-value=46 Score=17.58 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=19.6
Q ss_pred HHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHH
Q psy5355 20 QIFALEKTFEQTKYLAGPERAKLAYALGMTESQVK 54 (76)
Q Consensus 20 q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~ 54 (76)
....|-..+...+.... ..++..|||++..|.
T Consensus 12 ~~~~l~~i~d~v~~~~W---K~~aRkLGLse~~Id 43 (112)
T 1ich_A 12 DPATLYAVVENVPPLRW---KEFVKRLGLSDHEID 43 (112)
T ss_dssp -CHHHHHHHHHSCSTTH---HHHHHHHTCCHHHHH
T ss_pred chHHHHHHHHhCCHHHH---HHHHHHcCCCHHHHH
Confidence 34445555555554433 368999999997765
No 288
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.35 E-value=69 Score=14.96 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHhcccc-CCCCHHHHHHHHHHh-----CCCchhHH
Q psy5355 14 PTFSGQQIFALEKTFEQT-KYLAGPERAKLAYAL-----GMTESQVK 54 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~-~~p~~~~~~~La~~l-----~l~~~qV~ 54 (76)
...|+....+|+...... ..++..+ |+..+ +++...|.
T Consensus 13 ~~~t~~r~~IL~~l~~~~~~~~s~~e---l~~~l~~~~~~is~~TVy 56 (83)
T 2fu4_A 13 LKVTLPRLKILEVLQEPDNHHVSAED---LYKRLIDMGEEIGLATVY 56 (83)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSBCHHH---HHHHHHHTTCCCCHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCCCCCHHH---HHHHHHHhCCCCCHhhHH
Confidence 457888888887766654 5676665 55555 77776654
No 289
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=23.33 E-value=37 Score=18.61 Aligned_cols=35 Identities=11% Similarity=-0.027 Sum_probs=26.5
Q ss_pred HHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 22 FALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 22 ~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
..-...|....|- .....+|...|++...|-..|.
T Consensus 19 ~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~ 53 (224)
T 1t33_A 19 AAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFG 53 (224)
T ss_dssp HHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcC
Confidence 3334456666655 4567899999999999999997
No 290
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.22 E-value=84 Score=15.91 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHh
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVT 56 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vW 56 (76)
-++..+..+|.........+ ....+||..++++...|..-
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~--~t~~ela~~l~~~~~tvs~~ 67 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDG--LTQNDIAKALQRTGPTVSNL 67 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTC--EEHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCC--cCHHHHHHHhCCCcccHHHH
Confidence 46788888888776543111 22357899999998876543
No 291
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=23.10 E-value=49 Score=17.53 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=24.3
Q ss_pred HHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 24 LEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 24 L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
-...|... .......||...|++...|-..|.
T Consensus 23 A~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (190)
T 2v57_A 23 AMLVLADH---PTAALGDIAAAAGVGRSTVHRYYP 54 (190)
T ss_dssp HHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcC
Confidence 34445555 445567899999999999999997
No 292
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=23.08 E-value=62 Score=15.89 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=12.7
Q ss_pred HHHHHHhCCCchhHHH
Q psy5355 40 AKLAYALGMTESQVKV 55 (76)
Q Consensus 40 ~~La~~l~l~~~qV~v 55 (76)
..||..||++...|..
T Consensus 25 ~~LA~~Lg~~~~~I~~ 40 (85)
T 1ngr_A 25 RHLAGELGYQPEHIDS 40 (85)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHH
Confidence 4789999999877654
No 293
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=23.05 E-value=75 Score=17.65 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.+|+.+..+|...... ....++|..++++...|.+-..
T Consensus 159 ~Lt~rE~~vL~~l~~g------~s~~~Ia~~l~~s~~Tv~~~i~ 196 (225)
T 3klo_A 159 KLTKREQQIIKLLGSG------ASNIEIADKLFVSENTVKTHLH 196 (225)
T ss_dssp TSCHHHHHHHHHHTTT------CCHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC------CCHHHHHHHhCCCHHHHHHHHH
Confidence 3777777777665542 1356789999999999887654
No 294
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=23.00 E-value=65 Score=16.70 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
-++..+..+|.......+ .....||..++++...|..-.
T Consensus 38 ~lt~~~~~iL~~l~~~~~----~t~~eLa~~l~~~~~tvs~~l 76 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTPG----ISVADLTKRLIITGSSAAANV 76 (154)
T ss_dssp TCCHHHHHHHHHHHHSTT----EEHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC----CCHHHHHHHHCCCHHHHHHHH
Confidence 367777777776655322 234578888998887765433
No 295
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=22.97 E-value=71 Score=16.05 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-++.
T Consensus 23 i~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 23 VRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHc
Confidence 46789999999999998887
No 296
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=22.87 E-value=1.3e+02 Score=18.00 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=17.7
Q ss_pred HHHHHHHHHhC---CCchhHHHhhH
Q psy5355 37 PERAKLAYALG---MTESQVKVTGP 58 (76)
Q Consensus 37 ~~~~~La~~l~---l~~~qV~vWFq 58 (76)
.....|+..+| ++...|.-|++
T Consensus 27 ~~~~~l~~~~g~~~vs~~tv~~w~~ 51 (345)
T 3hot_A 27 ESHRMLVEAFGEQVPTVKTCERWFQ 51 (345)
T ss_dssp HHHHHHHHHTCSCSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 33456777888 99999999997
No 297
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=22.80 E-value=25 Score=19.33 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=26.1
Q ss_pred HHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 22 FALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 22 ~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
......|....|- ......||...|++...+-..|.
T Consensus 35 ~aa~~lf~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~ 70 (215)
T 2qko_A 35 NAAIEVLAREGAR-GLTFRAVDVEANVPKGTASNYFP 70 (215)
T ss_dssp HHHHHHHHHTCTT-TCCHHHHHHHSSSTTTCHHHHCS
T ss_pred HHHHHHHHHhChh-hccHHHHHHHcCCCcchHHHhCC
Confidence 3444456666653 33456889999999999999997
No 298
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=22.56 E-value=60 Score=17.83 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
...||..+|++...|.-|-.
T Consensus 27 q~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 27 LDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HHHHHHHHSSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999988876
No 299
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=22.40 E-value=62 Score=16.10 Aligned_cols=20 Identities=5% Similarity=0.114 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCchhHHHhh
Q psy5355 38 ERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWF 57 (76)
.+..||..+||++..+..-.
T Consensus 22 ~~t~La~~~~ls~~~~~~~l 41 (95)
T 1r7j_A 22 PKTRIMYGANLSYALTGRYI 41 (95)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHH
Confidence 45689999999999877544
No 300
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=22.24 E-value=64 Score=17.74 Aligned_cols=20 Identities=35% Similarity=0.245 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCchhHHHhhH
Q psy5355 39 RAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWFq 58 (76)
..+||..+|++...|.-|-.
T Consensus 26 ~~~la~~~gis~~~ls~~e~ 45 (198)
T 2bnm_A 26 HAALASLLGETPETVAAWEN 45 (198)
T ss_dssp HHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999988886
No 301
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=21.95 E-value=50 Score=16.74 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
.++..+..+|.......+ . ...+||..+|++...|..-.
T Consensus 35 ~l~~~~~~iL~~l~~~~~-~---t~~ela~~l~~~~~tvs~~l 73 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGP-C---PQNQLGRLTAMDAATIKGVV 73 (140)
T ss_dssp CCCHHHHHHHHHHHHHSS-B---CHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC-C---CHHHHHHHHCCCHHHHHHHH
Confidence 578888888877765432 2 34578999999998776544
No 302
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=21.81 E-value=48 Score=17.62 Aligned_cols=38 Identities=11% Similarity=-0.102 Sum_probs=28.4
Q ss_pred HHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhhH
Q psy5355 19 QQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 19 ~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWFq 58 (76)
.-+..-...|....|- .....+|...|++...|-..|.
T Consensus 13 ~Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 13 RLLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp HHHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcC
Confidence 3344455557776665 5567899999999999999997
No 303
>3cmn_A Putative hydrolase; PSI-II, NYSGXRC, apoenzyme, helical protein, 10492M, structural genomics, protein structure initiative; 2.25A {Chloroflexus aurantiacus j-10-fl} SCOP: d.92.1.16
Probab=21.73 E-value=1.4e+02 Score=19.12 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHhCCCchhHHHhhH-hHHHHHH
Q psy5355 33 YLAGPERAKLAYALGMTESQVKVTGP-ERAKLAY 65 (76)
Q Consensus 33 ~p~~~~~~~La~~l~l~~~qV~vWFq-rR~k~kk 65 (76)
+.-.+....++..|+++...|..|.. +-+-..+
T Consensus 157 ~LV~pNI~~~~~~L~v~~~d~rlwvalhE~aH~r 190 (372)
T 3cmn_A 157 YFVEPNIARVQQQLGLSDEDFRLWITLHEMTHAF 190 (372)
T ss_dssp EECHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeehhHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35566788899999999999999998 7555444
No 304
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=21.71 E-value=59 Score=17.69 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCCCchhHHHhh
Q psy5355 36 GPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 36 ~~~~~~La~~l~l~~~qV~vWF 57 (76)
....++||.++|++...++-=+
T Consensus 95 adTleeLA~~~gid~~~L~~TV 116 (160)
T 2lfc_A 95 KGSLESAAEQAGIVVDELVQTV 116 (160)
T ss_dssp CSSHHHHHHHHTCCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 3457789999999987654433
No 305
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=21.69 E-value=53 Score=19.09 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHhCCCchhHHH
Q psy5355 40 AKLAYALGMTESQVKV 55 (76)
Q Consensus 40 ~~La~~l~l~~~qV~v 55 (76)
.+||..+|++..||+-
T Consensus 37 ~~l~~~~~~~~~~iRk 52 (215)
T 2vt3_A 37 AELSDAVKVDSATIRR 52 (215)
T ss_dssp HHHHHHHCCCHHHHHH
T ss_pred HHHHHHhCCCHHHeec
Confidence 3789999999999884
No 306
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=21.56 E-value=51 Score=19.06 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=13.8
Q ss_pred HHHHHHhCCCchhHHH
Q psy5355 40 AKLAYALGMTESQVKV 55 (76)
Q Consensus 40 ~~La~~l~l~~~qV~v 55 (76)
.+||..+|++..||+-
T Consensus 32 ~~l~~~~~~~~~~iRk 47 (211)
T 2dt5_A 32 EQLGGLAQVTAFQVRK 47 (211)
T ss_dssp HHHHHHHTSCHHHHHH
T ss_pred HHHHHHhCCCHHHeec
Confidence 3689999999999874
No 307
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=21.55 E-value=52 Score=17.23 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHH
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~v 55 (76)
...+..++..+..... ..=..||..||+++..|..
T Consensus 20 ~~~t~~~l~~Ia~~LG-------~~Wk~LAR~LGlse~dId~ 54 (115)
T 2o71_A 20 SSPSDRQINQLAQRLG-------PEWEPMVLSLGLSQTDIYR 54 (115)
T ss_dssp SCCCHHHHHHHHHHCC-------TTHHHHHHHTTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHh-------hhHHHHHHHcCCCHHHHHH
Confidence 3456666666643321 1234679999999876654
No 308
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=21.46 E-value=1e+02 Score=16.89 Aligned_cols=37 Identities=8% Similarity=0.206 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHhcccc-CCCCHHHHHHHHHHhCCCchhHHH
Q psy5355 16 FSGQQIFALEKTFEQT-KYLAGPERAKLAYALGMTESQVKV 55 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~-~~p~~~~~~~La~~l~l~~~qV~v 55 (76)
+|..|..+|....... ... ....||..+|++...|..
T Consensus 39 lt~~q~~vL~~L~~~~~~~~---t~~eLa~~l~is~~tvs~ 76 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEET---TLNNIARKMGTSKQNINR 76 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGC---CHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCc---CHHHHHHHHCCCHHHHHH
Confidence 7888888888877532 122 245789999999887654
No 309
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=21.43 E-value=74 Score=16.08 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
-++..+..+|.......+ . ...+||..++++...|..-.
T Consensus 28 ~l~~~~~~iL~~l~~~~~-~---~~~ela~~l~is~~~vs~~l 66 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAP-L---HQLALQERLQIDRAAVTRHL 66 (142)
T ss_dssp SSCHHHHHHHHHHHHHCS-B---CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCC-C---CHHHHHHHHCCCHHHHHHHH
Confidence 356777777776655332 2 34468889999988776544
No 310
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=21.38 E-value=62 Score=16.57 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=12.8
Q ss_pred HHHHHHhCCCchhHHH
Q psy5355 40 AKLAYALGMTESQVKV 55 (76)
Q Consensus 40 ~~La~~l~l~~~qV~v 55 (76)
..||..||++...|..
T Consensus 33 k~LAr~Lg~s~~~I~~ 48 (111)
T 2yqf_A 33 AELARELQFSVEDINR 48 (111)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHH
Confidence 4789999999977654
No 311
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=21.38 E-value=32 Score=17.04 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHhcc--ccCCCCHHHHHHHHHHhCCCchh
Q psy5355 15 TFSGQQIFALEKTFE--QTKYLAGPERAKLAYALGMTESQ 52 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~--~~~~p~~~~~~~La~~l~l~~~q 52 (76)
.+++++...|...|. ..+.|-......+|..+|+...+
T Consensus 14 iLs~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~k~Gd 53 (78)
T 1hmj_A 14 IVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGD 53 (78)
T ss_pred ECCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCC
Confidence 466777777777665 34456666666777777776654
No 312
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=21.24 E-value=31 Score=16.84 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 16 FSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 16 ~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
++..+..+|...+....-........||..++++...|.--.
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l 51 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLII 51 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHH
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 456677777766543221000124578999999998776544
No 313
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=21.20 E-value=53 Score=19.18 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.8
Q ss_pred HHHHHHhCCCchhHHH
Q psy5355 40 AKLAYALGMTESQVKV 55 (76)
Q Consensus 40 ~~La~~l~l~~~qV~v 55 (76)
.+||..+|++..||+-
T Consensus 36 ~ela~~~gv~~~qiRk 51 (212)
T 3keo_A 36 KQIADALGIDSATVRR 51 (212)
T ss_dssp HHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH
Confidence 3789999999999874
No 314
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=21.10 E-value=96 Score=15.76 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=31.3
Q ss_pred CCCCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCC--chhHHHhh
Q psy5355 12 TRPTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMT--ESQVKVTG 57 (76)
Q Consensus 12 ~R~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~--~~qV~vWF 57 (76)
..+.++..++..|...|. .+.+.+..+...+...+|+. ...|...|
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 58 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 357899999999999984 34578888777766666643 34444443
No 315
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=20.98 E-value=1e+02 Score=15.93 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=32.4
Q ss_pred CCCCCCCCHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHhCCC--chhHHHhh
Q psy5355 10 KHTRPTFSGQQIFALEKTFE-----QTKYLAGPERAKLAYALGMT--ESQVKVTG 57 (76)
Q Consensus 10 ~r~R~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~La~~l~l~--~~qV~vWF 57 (76)
...+..++..++..|...|. .+.+.+..+...+...+|+. ...+..-|
T Consensus 16 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 16 KKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp ----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34567899999999999984 34578888888777777764 34444444
No 316
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=20.93 E-value=46 Score=17.11 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHh
Q psy5355 14 PTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVT 56 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vW 56 (76)
..++..|..+|.......+ . ...+||..++++...|..-
T Consensus 33 ~~lt~~~~~iL~~l~~~~~-~---t~~eLa~~l~~~~~~vs~~ 71 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEANEP-I---SQKEIALWTKKDTPTVNRI 71 (143)
T ss_dssp SSSCHHHHHHHHHHHHHSS-E---EHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCC-c---CHHHHHHHHCCCHhhHHHH
Confidence 3578888888877765422 2 3457899999998876543
No 317
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=20.85 E-value=1.1e+02 Score=16.58 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhccc--cCCCCHHHHHHHHHHh
Q psy5355 14 PTFSGQQIFALEKTFEQ--TKYLAGPERAKLAYAL 46 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~~--~~~p~~~~~~~La~~l 46 (76)
..++++++..|+..|.. ...|+...+-.+|-.|
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 46889999999999954 6788888877776544
No 318
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=20.83 E-value=74 Score=18.35 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCchhHHHhhH
Q psy5355 38 ERAKLAYALGMTESQVKVTGP 58 (76)
Q Consensus 38 ~~~~La~~l~l~~~qV~vWFq 58 (76)
...+||..+|++...|.-|.+
T Consensus 26 tQ~eIA~~lGiSr~~VSR~L~ 46 (192)
T 1zx4_A 26 SQKDIAAKEGLSQAKVTRALQ 46 (192)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHHH
Confidence 456899999999999999886
No 319
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.65 E-value=74 Score=14.30 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=14.1
Q ss_pred HHHHHHHhCCCchhHHHhh
Q psy5355 39 RAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~vWF 57 (76)
....|..||++...+.-+.
T Consensus 35 ~~~aA~~LGisr~tL~rkl 53 (63)
T 3e7l_A 35 LKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4467999999988765544
No 320
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=20.35 E-value=60 Score=17.57 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCchhHHH
Q psy5355 39 RAKLAYALGMTESQVKV 55 (76)
Q Consensus 39 ~~~La~~l~l~~~qV~v 55 (76)
-.+||..+|+++..|.-
T Consensus 20 ~~~la~~lg~s~~tv~~ 36 (162)
T 3i4p_A 20 VADLAKKVGLSTTPCWR 36 (162)
T ss_dssp HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 44789999999987654
No 321
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=20.29 E-value=70 Score=14.72 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=14.6
Q ss_pred HHHHhCCCchhHHHhhH
Q psy5355 42 LAYALGMTESQVKVTGP 58 (76)
Q Consensus 42 La~~l~l~~~qV~vWFq 58 (76)
-|..+||+...|+-.+.
T Consensus 21 ~Ak~lGlsleEIrefL~ 37 (57)
T 1b0n_B 21 EAKEANISPEEIRKYLL 37 (57)
T ss_dssp HHHHTTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 38899999999998876
No 322
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.24 E-value=68 Score=13.73 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHhcc
Q psy5355 14 PTFSGQQIFALEKTFE 29 (76)
Q Consensus 14 ~~~t~~q~~~L~~~f~ 29 (76)
.-|+++.+..|+...+
T Consensus 15 egfspeelaaleselq 30 (48)
T 1g6u_A 15 EGFSPEELAALESELQ 30 (48)
T ss_dssp TTCSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 4588888888877553
No 323
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.17 E-value=72 Score=16.13 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHhccccCCCCHHHHHHHHHHhCCCchhHHHhh
Q psy5355 15 TFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTG 57 (76)
Q Consensus 15 ~~t~~q~~~L~~~f~~~~~p~~~~~~~La~~l~l~~~qV~vWF 57 (76)
.++..+..+|.......+ .....||..++++...|..-.
T Consensus 33 ~lt~~~~~iL~~l~~~~~----~t~~ela~~l~~s~~~vs~~l 71 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGE----MESYQLANQACILRPSMTGVL 71 (142)
T ss_dssp TCCHHHHHHHHHHHHHCS----EEHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC----CCHHHHHHHHCCCHhHHHHHH
Confidence 367777777776655332 234578899999988776544
Done!