RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5355
(76 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 52.1 bits (125), Expect = 1e-11
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 2 NSDKDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
N + R ++ Q LEK F YL R ++A L +TE QVK+
Sbjct: 6 NWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 59
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 50.2 bits (120), Expect = 5e-11
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
K + FS Q LEK FE KYL+ PER +LA L ++E QVK
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT 46
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 50.5 bits (120), Expect = 6e-11
Identities = 13/63 (20%), Positives = 24/63 (38%)
Query: 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGPERAKLAYALGMTES 72
R + L + +E+ K + ER L E + P +A+ + +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 73 QVK 75
+V
Sbjct: 61 RVY 63
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 49.8 bits (119), Expect = 7e-11
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
R T++ Q LEK F +YL R ++A+AL +TE Q+K+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 43
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 50.2 bits (120), Expect = 7e-11
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
+ R +F+ +QI ALEK FE+T Y R +LA + + E++++V
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 47
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 49.1 bits (117), Expect = 1e-10
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
R F+ Q L F++ K + + ++ LG+ S V
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 44
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 47.2 bits (112), Expect = 8e-10
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 12 TRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
R FS +Q+ L++ F + +YL R +L+ LG+ E+Q+K+
Sbjct: 2 PRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI 45
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 46.8 bits (111), Expect = 1e-09
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 8 KKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
K R + +Q+ L + + +L G++ ++V
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRV 49
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 46.8 bits (111), Expect = 1e-09
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
+ R +S Q+ LE+ + K++ +R K++ A ++E Q+ +
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITI 47
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 46.1 bits (109), Expect = 3e-09
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 8 KKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
K++ +R TFS Q+ LE+ FE+T+Y R +LA +TE++++V
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 48
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 45.8 bits (108), Expect = 5e-09
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 12 TRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVTGPERAKLAYALGMTE 71
+R T+ + + +E F + +Y +R ++A A + + +T
Sbjct: 3 SRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDL------ERVTS 56
Query: 72 SQVK 75
+V
Sbjct: 57 LKVY 60
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 45.4 bits (107), Expect = 8e-09
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 1 NNSDKDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
+ R F+ +Q+ LEK F KYL+ R ++A L + E+QVK+
Sbjct: 19 VSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 73
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 44.5 bits (105), Expect = 9e-09
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
+ + S Q LE+ F + + L E+ ++A G+T QV+V
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 43
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 43.8 bits (103), Expect = 2e-08
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 9 KKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
++ R FS Q++ LE+ F+Q KYL+ PER LA + +T +QVK+
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKI 48
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 43.0 bits (101), Expect = 4e-08
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
+ R F+ Q+ ALE+ F Q +YL+ ERA+ + +L +TE+QVK+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKI 46
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 42.6 bits (100), Expect = 5e-08
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
R F+ Q+ LEK F + Y++ P R +LA L + ES +KV
Sbjct: 3 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKV 45
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 42.2 bits (99), Expect = 8e-08
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
R T S ALE+ F + + E ++A L + + V+V
Sbjct: 3 RTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 45
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 42.3 bits (99), Expect = 1e-07
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 5 KDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
KK+ R F+ Q + LE+ F Q +YL+ PER LA + +T +QVK+
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKI 55
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 41.5 bits (97), Expect = 2e-07
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
R + ALEK+F + + + +A L M + ++V
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRV 44
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 41.1 bits (96), Expect = 2e-07
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
+ TR TF+ QI LE+ F Q +YL P A L+ L + +QVK+
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 47
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 40.1 bits (94), Expect = 4e-07
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 17 SGQQIFALEKTF-EQTKYLAGPERAKLAYALGMTESQVKV 55
+ Q LEK F TK+ L+ L ++
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 40
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 40.1 bits (94), Expect = 6e-07
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 7 AKKKHTRPTFSGQQIFALEKTFEQTK---YLAGPERAKLAYALGMTESQVKV 55
K K R + Q Y E+ ++A +T QV
Sbjct: 2 GKNK--RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNN 51
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 40.0 bits (93), Expect = 7e-07
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 8 KKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
+K R + + ++LE F + + + +A LG+ + V+V
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRV 54
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 39.6 bits (92), Expect = 9e-07
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 10 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
+ R F+ QQ+ LE TF++ +Y R ++A +TE++V+V
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRV 47
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 39.0 bits (91), Expect = 1e-06
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 12 TRPTFSGQQIFALEKTFE-QTKYLAGPERAKLAYALGMTESQVKV 55
P + LEK F TKY L+ L + +++
Sbjct: 4 DSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 48
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 39.0 bits (91), Expect = 1e-06
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 16 FSGQQIFALEKTFEQTK---YLAGPERAKLAYALGMTESQVKV 55
F+ + + LE F + YL L ++ Q+K
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 47
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 39.2 bits (91), Expect = 2e-06
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 7 AKKKHTRPTFSGQQIFALEKTFEQ---TKYLAGPERAKLAYALGMTESQVKV 55
A++K R F+ Q L + F Y + + +LA G+T SQV
Sbjct: 1 ARRK--RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 38.8 bits (90), Expect = 3e-06
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 10 KHTRPTFSGQQIFALEKTFEQT-KYLAGPERAKLAYALGMTESQVKV 55
T + Q+ LE F + K+ +A G+TE Q +
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 37.3 bits (86), Expect = 9e-06
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 1 NNSDKDAKKKHTRPTFSGQQIFALEKTFEQ----TKYLAGPERAKLAYALGMTESQVKV 55
N S K R F+ +Q + E+ + + G+ +K+
Sbjct: 9 NPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKI 67
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 35.4 bits (81), Expect = 5e-05
Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 6 DAKKKHTRPTFSGQQIFALEKTFEQT-KYLAGPERAKLAYALGMTESQVKV 55
+ +R S + + L+ Y L+ L + + +
Sbjct: 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 34.3 bits (78), Expect = 2e-04
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 4 DKDAKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
D +K + + +Q+ L+ +F + L E +L +T ++
Sbjct: 2 DFTPQKFKEK---TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 50
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 29.3 bits (65), Expect = 0.013
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 12 TRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKV 55
+ + +Q+ L+ F Q ++ + KL G+ ++
Sbjct: 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 49
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella
typhimurium [TaxId: 90371]}
Length = 376
Score = 25.7 bits (55), Expect = 0.52
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 13 RPTFSGQQIFALEKTFEQTKYLAGPERAKL 42
RP +++ A++ + GP+ +L
Sbjct: 7 RPAMGAEELAAVKTVLDSGWITTGPKNQEL 36
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 24.6 bits (52), Expect = 1.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 39 RAKLAYALGMTESQVKVTGP 58
K+A L M ++++V P
Sbjct: 87 HLKVAACLQMDSARIRVIKP 106
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId:
1061]}
Length = 654
Score = 24.1 bits (51), Expect = 2.0
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 39 RAKLAYALGMTESQVKVTGP 58
+ K+A+ALG+ V+V
Sbjct: 80 QHKVAHALGLAFHDVRVEMR 99
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 24.2 bits (51), Expect = 2.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 39 RAKLAYALGMTESQVKVTGP 58
R +A + E ++V P
Sbjct: 65 RTMVAMFCAIPEHLIEVRVP 84
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 24.1 bits (51), Expect = 2.3
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 39 RAKLAYALGMTESQVKVTGP 58
++ +A LG+ +++ V
Sbjct: 79 QSFVAKMLGVPVNRILVRVK 98
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
47421]}
Length = 657
Score = 23.8 bits (50), Expect = 2.6
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 39 RAKLAYALGMTESQVKVTGPE 59
R ++ G+ ES+V++ P+
Sbjct: 97 RTVVSMLSGIPESKVRIVSPD 117
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 95
Score = 22.6 bits (48), Expect = 4.5
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 24 LEKTFEQTKYLAGPERAKLAYALGMTESQVK 54
L+ F+ G + +LA L ++E+++
Sbjct: 9 LQVAFDIVCDNVGRDWKRLARELKVSEAKMD 39
>d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria
meningitidis, (serogroup A) [TaxId: 487]}
Length = 371
Score = 22.6 bits (48), Expect = 8.1
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 42 LAYALGMTESQVKVTGP 58
+ ++L + E ++VTG
Sbjct: 52 IRHSLDLEEKCLQVTGS 68
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 42
Score = 21.0 bits (45), Expect = 8.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 32 KYLAGPERAKLAYALGMTESQVKVTGP 58
+ +A P K A G+ V+ TG
Sbjct: 1 RVIAMPSVRKYAREKGVDIRLVQGTGK 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.123 0.330
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 226,803
Number of extensions: 7617
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 42
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.0 bits)