BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5357
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QHU|A Chain A, Mammalian Blood Serum Haemopexin Deglycosylated And In
Complex With Its Ligand Haem
pdb|1QJS|A Chain A, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
pdb|1QJS|B Chain B, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
Length = 460
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 11/160 (6%)
Query: 22 NHDDQSVRYEPHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLE 81
H +S R +P A Y+ S SH + TN S P P
Sbjct: 247 QHGHESTRCDPDLVLSAMVSDNHGATYVFSGSHYWRLDTNRDGWHSWPIAHQWPQGP--S 304
Query: 82 LLGALIAYRNKCYLWIDNQCVIHWLTGNKVFTTFVNNRVKALKEIKASVFPIVYKYIPTD 141
+ A ++ +K YL D + + G T VN K L++ S P V I +
Sbjct: 305 TVDAAFSWEDKLYLIQDTKVYVFLTKGG---YTLVNGYPKRLEKELGS--PPV---ISLE 356
Query: 142 SNPADLACKGSSAVY-LQGNRLWWEGLGFLTLETWPDFPF 180
+ A C GSS ++ + G RLWW L TW + P+
Sbjct: 357 AVDAAFVCPGSSRLHIMAGRRLWWLDLKSGAQATWTELPW 396
>pdb|1HXN|A Chain A, 1.8 Angstroms Crystal Structure Of The C-Terminal Domain
Of Rabbit Serum Hemopexin
Length = 219
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 11/160 (6%)
Query: 22 NHDDQSVRYEPHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLE 81
H +S R +P A Y+ S SH + TN S P P
Sbjct: 6 QHGHESTRCDPDLVLSAMVSDNHGATYVFSGSHYWRLDTNRDGWHSWPIAHQWPQGP--S 63
Query: 82 LLGALIAYRNKCYLWIDNQCVIHWLTGNKVFTTFVNNRVKALKEIKASVFPIVYKYIPTD 141
+ A ++ +K YL D + + G T VN K L++ S P V I +
Sbjct: 64 TVDAAFSWEDKLYLIQDTKVYVFLTKGG---YTLVNGYPKRLEKELGS--PPV---ISLE 115
Query: 142 SNPADLACKGSSAVY-LQGNRLWWEGLGFLTLETWPDFPF 180
+ A C GSS ++ + G RLWW L TW + P+
Sbjct: 116 AVDAAFVCPGSSRLHIMAGRRLWWLDLKSGAQATWTELPW 155
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 141 DSNPADLACKGSSAVYLQGNRLWWEGLGFLTLETW 175
+S PAD+A K SA Y+ G + G+G++ L+ W
Sbjct: 1027 ESIPADVAIKQWSAKYMNGTNVLGNGMGYV-LKDW 1060
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 92 KCYLWIDNQCVIHWLTGNKVFTTFVNNRVK 121
K YLW +NQ V+ WL + + +++ ++
Sbjct: 706 KAYLWDNNQTVVQWLEAHGQASDVLHSTIR 735
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
Length = 760
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 92 KCYLWIDNQCVIHWL 106
K YLW +NQ V+ WL
Sbjct: 680 KAYLWDNNQVVVQWL 694
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
Length = 762
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 92 KCYLWIDNQCVIHWL 106
K YLW +NQ V+ WL
Sbjct: 682 KAYLWDNNQVVVQWL 696
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,592,758
Number of Sequences: 62578
Number of extensions: 220786
Number of successful extensions: 336
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 8
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)