Query psy5357
Match_columns 181
No_of_seqs 130 out of 468
Neff 6.1
Searched_HMMs 29240
Date Sat Aug 17 00:30:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 98.4 6.1E-07 2.1E-11 66.9 7.8 112 30-149 2-127 (141)
2 2ehg_A Ribonuclease HI; RNAse 98.4 2.3E-07 7.7E-12 70.6 5.0 110 32-150 2-129 (149)
3 3u3g_D Ribonuclease H, RNAse H 98.3 2.2E-06 7.4E-11 63.5 7.1 110 31-148 3-130 (140)
4 1rw3_A POL polyprotein; RNA an 98.2 2.2E-07 7.7E-12 82.7 -0.2 87 29-121 344-439 (455)
5 2kq2_A Ribonuclease H-related 98.0 9.4E-06 3.2E-10 62.1 5.8 99 31-141 6-118 (147)
6 3p1g_A Xenotropic murine leuke 97.9 8E-05 2.7E-09 58.4 9.2 103 27-143 19-134 (165)
7 2lsn_A Reverse transcriptase; 97.8 0.00014 4.7E-09 57.2 9.7 108 28-142 4-139 (165)
8 2qkb_A Ribonuclease H1, HS-RNA 97.8 4.4E-05 1.5E-09 58.4 6.8 102 30-142 6-133 (154)
9 2e4l_A Ribonuclease HI, RNAse 97.8 8.6E-05 2.9E-09 57.3 8.3 108 31-149 6-139 (158)
10 1jl1_A Ribonuclease HI; RNAse 97.8 8.9E-05 3E-09 57.0 7.8 100 31-141 4-124 (155)
11 4htu_A Ribonuclease H, RNAse H 97.7 6.1E-06 2.1E-10 63.3 0.5 77 31-119 5-96 (134)
12 3qio_A GAG-POL polyprotein; RN 97.6 3.7E-05 1.3E-09 59.2 4.0 97 30-142 11-129 (150)
13 2zd1_A Reverse transcriptase/r 97.5 0.00012 4E-09 66.9 6.2 100 31-149 439-554 (557)
14 3h08_A RNH (ribonuclease H); R 97.5 0.0002 7E-09 54.0 6.5 100 31-141 4-125 (146)
15 1ril_A Ribonuclease H; hydrola 97.3 0.00023 7.7E-09 55.4 4.4 99 31-140 8-128 (166)
16 1zbf_A Ribonuclease H-related 97.1 0.00075 2.6E-08 51.7 6.1 68 30-109 10-89 (142)
17 1mu2_A HIV-2 RT; HIV-2 reverse 96.6 0.0026 9.1E-08 57.9 6.2 64 74-141 470-538 (555)
18 2zd1_B P51 RT; P51/P66, hetero 83.5 1.4 4.7E-05 38.7 5.1 71 29-108 322-405 (428)
19 2zd1_A Reverse transcriptase/r 51.5 28 0.00096 31.2 6.3 69 29-106 324-405 (557)
20 1mu2_A HIV-2 RT; HIV-2 reverse 35.5 43 0.0015 29.9 4.9 19 30-48 323-342 (555)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.44 E-value=6.1e-07 Score=66.91 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=67.6
Q ss_pred eeeEEEeccCccc----ceeEEEEEEeecC-CceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc-------cceeee
Q psy5357 30 YEPHAFSDACSYS----YASVVYLRSVSHS-GDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN-------KCYLWI 97 (181)
Q Consensus 30 ~~L~~F~DAS~~a----ygavvYlr~~~~~-g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l-------~~~~~t 97 (181)
.++.+|+|||..+ .|+.++++. .+ |.. ..-. +. . +...|--+.||.|++.|.++ .+.++|
T Consensus 2 ~~~~iy~DGs~~~~~g~~g~G~v~~~--~~~~~~-~~~~-~~-~---~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~t 73 (141)
T 3hst_B 2 VKVVIEADGGSRGNPGPAGYGAVVWT--ADHSTV-LAES-KQ-A---IGRATNNVAEYRGLIAGLDDAVKLGATEAAVLM 73 (141)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEE--TTSCSE-EEEE-EE-E---EEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cEEEEEEecCCCCCCCCcEEEEEEEe--CCCCcE-EEee-ec-c---CCCCchHHHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 4789999999652 244444442 22 321 1111 11 1 12457789999999999875 799999
Q ss_pred ccHHHHHHHhcC-ccccceecchhchHHHHHhccCCcceEEeCCCCC-CCcccC
Q psy5357 98 DNQCVIHWLTGN-KVFTTFVNNRVKALKEIKASVFPIVYKYIPTDSN-PADLAC 149 (181)
Q Consensus 98 DS~i~l~~i~~~-~~~~~fV~nRv~~i~~I~~~~~~~~~~hV~t~~N-PAD~~S 149 (181)
||+.++.++++. +.-..-....+..|+++.+....+.|.|||.+.| .||.+.
T Consensus 74 DS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA 127 (141)
T 3hst_B 74 DSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLA 127 (141)
T ss_dssp SCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHH
T ss_pred ChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHH
Confidence 999999999974 2111111122221113333345689999998888 466543
No 2
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.42 E-value=2.3e-07 Score=70.60 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=68.1
Q ss_pred eEEEeccCcc-------c-ceeEEEEEEeecCCceeEEEEeccccccCC-CCCCcchhhHhHHHHHhhc-------ccee
Q psy5357 32 PHAFSDACSY-------S-YASVVYLRSVSHSGDIRTNIVFAKSRVAPT-NKPTLPRLELLGALIAYRN-------KCYL 95 (181)
Q Consensus 32 L~~F~DAS~~-------a-ygavvYlr~~~~~g~~~~~ll~aKsrvaPl-k~~tIPrlEL~a~~l~~~l-------~~~~ 95 (181)
+.+|+|||-. | ||++++- +|... . .+++ .+.|. ...|--+.|+.|++.|.++ .+.+
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~-----~g~~~-~-~~~~-~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i 73 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYL-----DNRKI-E-GYGL-AEKPFSINSTNNVAEYSGLICLMETMLRLGISSPII 73 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEEC-----SSCEE-E-EEEE-CSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred EEEEEeeccCCCCCChheEEEEEEEE-----CCEEE-E-Eecc-ccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5689999876 2 5655442 44321 1 1111 12333 2468889999999999875 7999
Q ss_pred eeccHHHHHHHhcC-ccccceecchhchHHHHHhccCCcceEEeCCCCC-CCcccCC
Q psy5357 96 WIDNQCVIHWLTGN-KVFTTFVNNRVKALKEIKASVFPIVYKYIPTDSN-PADLACK 150 (181)
Q Consensus 96 ~tDS~i~l~~i~~~-~~~~~fV~nRv~~i~~I~~~~~~~~~~hV~t~~N-PAD~~SR 150 (181)
+|||+.++.++++. +.-..-...-++.+.++.+.. .+.|.|||.+.| .||.+.|
T Consensus 74 ~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~ 129 (149)
T 2ehg_A 74 KGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSR 129 (149)
T ss_dssp EESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHH
T ss_pred EeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHH
Confidence 99999999999976 211111111122111222222 489999999988 5787654
No 3
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.26 E-value=2.2e-06 Score=63.45 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=65.9
Q ss_pred eeEEEeccCccc----ceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc-----------ccee
Q psy5357 31 EPHAFSDACSYS----YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN-----------KCYL 95 (181)
Q Consensus 31 ~L~~F~DAS~~a----ygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l-----------~~~~ 95 (181)
++.+|+|||-.+ .|+.++++ +.+|..... .++ .+ ...|--+.||.|++.|.++ .+.+
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~--~~~g~~~~~--~~~-~~---~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i 74 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVIT--DEKGNTLHE--SSA-YI---GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEV 74 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEE--CTTSCEEEE--EEE-EE---EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEE
T ss_pred eEEEEEecCCCCCCCCcEEEEEEE--eCCCCEEEE--EEe-eC---CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 578999999742 34444444 234532111 111 11 1357889999999998864 4789
Q ss_pred eeccHHHHHHHhcCcc-ccceecchhchHHHH-HhccCCcceEEeCCCCCC-Cccc
Q psy5357 96 WIDNQCVIHWLTGNKV-FTTFVNNRVKALKEI-KASVFPIVYKYIPTDSNP-ADLA 148 (181)
Q Consensus 96 ~tDS~i~l~~i~~~~~-~~~fV~nRv~~i~~I-~~~~~~~~~~hV~t~~NP-AD~~ 148 (181)
+|||+.++.++++... -..-....+..|.++ .+....+.|.|||...|- ||.+
T Consensus 75 ~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~L 130 (140)
T 3u3g_D 75 RMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADEL 130 (140)
T ss_dssp EESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHH
T ss_pred EeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHH
Confidence 9999999999997511 111111122212233 333457999999987773 5543
No 4
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=98.17 E-value=2.2e-07 Score=82.72 Aligned_cols=87 Identities=9% Similarity=-0.070 Sum_probs=64.8
Q ss_pred ceeeEEEeccCcccceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc--------cceeeeccH
Q psy5357 29 RYEPHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN--------KCYLWIDNQ 100 (181)
Q Consensus 29 ~~~L~~F~DAS~~aygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l--------~~~~~tDS~ 100 (181)
...+++|||||..++|||.+-. .+|..+....+||+...+.++++++.+||+|++.|++. .+.++||+.
T Consensus 344 ~~~~~l~~DAS~~~~gavL~q~---~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 344 TKPFELFVDEKQGYAKGVLTQK---LGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp CCTTSCEEEEEECSSSBEECCB---CTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred CCcEEEEEeccCCcceeEEEEe---cCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 3467889999999999987643 24444444455776666667899999999999999874 799999998
Q ss_pred HHHHHHhcC-ccccceecchhc
Q psy5357 101 CVIHWLTGN-KVFTTFVNNRVK 121 (181)
Q Consensus 101 i~l~~i~~~-~~~~~fV~nRv~ 121 (181)
+++|+++. .+| +..+|+.
T Consensus 421 -~~~~l~~~~~~~--~~~~Rl~ 439 (455)
T 1rw3_A 421 -VEALVKQPPDRW--LSNARMT 439 (455)
T ss_dssp -TTTTSSSTTTTT--CCCCCCS
T ss_pred -HHHHhCCCcccc--ccchHHH
Confidence 88998876 333 3344544
No 5
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=97.98 E-value=9.4e-06 Score=62.14 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=61.0
Q ss_pred eeEEEeccCc----ccceeEEEEEEeecCCceeEEEEecc-ccccCC-CCCCcchhhHhHHHHHhhc------cceeeec
Q psy5357 31 EPHAFSDACS----YSYASVVYLRSVSHSGDIRTNIVFAK-SRVAPT-NKPTLPRLELLGALIAYRN------KCYLWID 98 (181)
Q Consensus 31 ~L~~F~DAS~----~aygavvYlr~~~~~g~~~~~ll~aK-srvaPl-k~~tIPrlEL~a~~l~~~l------~~~~~tD 98 (181)
.+.+|+|||. .|||++++ . +|.. .-+ +. ....|. ...|--+.||.|+..|.++ .+.++||
T Consensus 6 ~i~iytDGs~~~g~~G~G~vi~--~---~g~~--~~~-~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~~v~I~tD 77 (147)
T 2kq2_A 6 EYDVYTDGSYVNGQYAWAYAFV--K---DGKV--HYE-DADVGKNPAAATMRNVAGEIAAALYAVKKASQLGVKIRILHD 77 (147)
T ss_dssp CCEEECCCCCBTTBCEEEEEEE--E---TTEE--EEE-EEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTCCCCBSSC
T ss_pred eEEEEECCCCCCCCcEEEEEEE--E---CCEE--EEE-EeccccccccccccHHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 5789999997 45555443 2 3421 111 11 111111 1357889999999999874 7999999
Q ss_pred cHHHHHHHhcC-ccc-cceecchhchHHHHHhccCCcceEEeCCC
Q psy5357 99 NQCVIHWLTGN-KVF-TTFVNNRVKALKEIKASVFPIVYKYIPTD 141 (181)
Q Consensus 99 S~i~l~~i~~~-~~~-~~fV~nRv~~i~~I~~~~~~~~~~hV~t~ 141 (181)
|+.+..|+.+. +.- +..+.|+ . .++++...+.|.|||+-
T Consensus 78 S~~i~~w~~~~w~~~~~~~~~~~-~---l~~~l~~~v~~~wV~gH 118 (147)
T 2kq2_A 78 YAGIAFWATGEWKAKNEFTQAYA-K---LMNQYRGIYSFEKVKAH 118 (147)
T ss_dssp CSTHHHHTTSSSSCCHHHHHHHH-C---GGGGGSTTCCBCCCCCC
T ss_pred cHHHHHHHhCCCccCCcchHHHH-H---HHHHhcCCeeEEEecCc
Confidence 99999999875 221 1223222 1 23333337899999974
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=97.86 E-value=8e-05 Score=58.41 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=64.5
Q ss_pred CCceeeEEEeccCcc------cceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc----cceee
Q psy5357 27 SVRYEPHAFSDACSY------SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN----KCYLW 96 (181)
Q Consensus 27 ~~~~~L~~F~DAS~~------aygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l----~~~~~ 96 (181)
....++.+|+|||.. +||+++|- +|.. .. .+ .. ....|.-|.||.|+..|.++ .+.+|
T Consensus 19 ~~~~~i~iytDGs~~~npG~~g~G~vi~~-----~~~~-~~--~~--~~--~~~~Tnn~aEl~Ai~~AL~~~~~~~v~I~ 86 (165)
T 3p1g_A 19 IPDADYTWYTDGSSFLQEGQRRAGAAVTT-----ETEV-IW--AR--AL--PAGTSAQRAELIALTQALKMAEGKKLNVY 86 (165)
T ss_dssp CTTCSEEEEEEEEEEEETTEEEEEEEEEC-----SSCE-EE--EE--EE--CTTCCHHHHHHHHHHHHHHHTBTSEEEEE
T ss_pred CCCCCEEEEEEcccCCCCCceEEEEEEEE-----CCEE-EE--Ee--cC--CCCCcHHHHHHHHHHHHHHHccCceEEEE
Confidence 344579999999985 35554432 3321 11 11 11 12468899999999999986 79999
Q ss_pred eccHHHHHHHhcCccccceecchhchHHHH-Hh--ccCCcceEEeCCCCC
Q psy5357 97 IDNQCVIHWLTGNKVFTTFVNNRVKALKEI-KA--SVFPIVYKYIPTDSN 143 (181)
Q Consensus 97 tDS~i~l~~i~~~~~~~~fV~nRv~~i~~I-~~--~~~~~~~~hV~t~~N 143 (181)
|||+.++.-|... .-+..|.|+-- +++| .+ ....+.|.||++-.+
T Consensus 87 tDS~~vi~~iw~~-~~g~~v~n~dl-~~~l~~~l~~~~~v~~~wVkgH~g 134 (165)
T 3p1g_A 87 TDSRYAFATAHVH-SEGREIKNKNE-ILALLKALFLPKRLSIIHCPGHQK 134 (165)
T ss_dssp ECCHHHHHHHHSC-CCSCCCSSHHH-HHHHHHHTTSBSEEEEEECCSSCC
T ss_pred EchHHHHhhhhcc-cCCCcccCHHH-HHHHHHHHhcCCceEEEEecCCCC
Confidence 9999888755322 22344666421 2244 22 235689999998763
No 7
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=97.80 E-value=0.00014 Score=57.16 Aligned_cols=108 Identities=12% Similarity=0.036 Sum_probs=56.0
Q ss_pred CceeeEEEeccCccc---------ceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc------c
Q psy5357 28 VRYEPHAFSDACSYS---------YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN------K 92 (181)
Q Consensus 28 ~~~~L~~F~DAS~~a---------ygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l------~ 92 (181)
.+.|+.+|+|+|-.+ .|..+|++...... +..--.. .|....|=-+.|+.|+..+.+. .
T Consensus 4 ~~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~--~~~~~~~----~~tnn~te~~Aei~Al~~al~~al~~~~~ 77 (165)
T 2lsn_A 4 GQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEY--QVLNQWS----IPLGNHTAQMAEIAAVEFACKKALKIPGP 77 (165)
T ss_dssp CCCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSC--CEEEEEE----EEESSCCHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCcc--EEecccc----CCchHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 467899999999432 33444555322211 1111111 1122233334444444443332 6
Q ss_pred ceeeeccHHHHHHHh--------cC--ccccceecchhchHHHHHh---ccCCcceEEeCCCC
Q psy5357 93 CYLWIDNQCVIHWLT--------GN--KVFTTFVNNRVKALKEIKA---SVFPIVYKYIPTDS 142 (181)
Q Consensus 93 ~~~~tDS~i~l~~i~--------~~--~~~~~fV~nRv~~i~~I~~---~~~~~~~~hV~t~~ 142 (181)
+.++|||+-++.-|. +. +.-+..|.|+=- +++|.+ ....+.|.||++-.
T Consensus 78 v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL-~~~l~~~~~~~~~v~~~~VkgH~ 139 (165)
T 2lsn_A 78 VLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISK-WKSIAECLSMKPDITIQHEKGHQ 139 (165)
T ss_dssp EEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHH-HHHHHHHHHHCTTCEEEECCSSS
T ss_pred EEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHH-HHHHHHHHhCCCCEEEEEEeCCC
Confidence 999999999885443 32 222345666521 123333 23468999999753
No 8
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=97.80 E-value=4.4e-05 Score=58.38 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=62.1
Q ss_pred eeeEEEeccCccc-------ceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc-------ccee
Q psy5357 30 YEPHAFSDACSYS-------YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN-------KCYL 95 (181)
Q Consensus 30 ~~L~~F~DAS~~a-------ygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l-------~~~~ 95 (181)
-.+.+|+|||..+ .|+.+|++. .++. .. ++ ++.. ..|--+.||.|+..|.++ .+.+
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~--~~~~-~~----~~-~l~~--~~tn~~aEl~A~~~aL~~~~~~~~~~v~i 75 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGP--GHPL-NV----GI-RLPG--RQTNQRAEIHAACKAIEQAKTQNINKLVL 75 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECST--TCTT-CE----EE-ECCS--SCCHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEEC--CCce-eE----Ee-ecCC--CCchHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 3688999998642 344444441 1221 11 11 1111 468899999999998875 7899
Q ss_pred eeccHHHHHHHhcC------cccc----ceecchhchHHHHHhcc--CCcceEEeCCCC
Q psy5357 96 WIDNQCVIHWLTGN------KVFT----TFVNNRVKALKEIKASV--FPIVYKYIPTDS 142 (181)
Q Consensus 96 ~tDS~i~l~~i~~~------~~~~----~fV~nRv~~i~~I~~~~--~~~~~~hV~t~~ 142 (181)
+|||+.++.-|.+- +.|+ ..|.|+- -+++|.++. ..+.|.|||+-.
T Consensus 76 ~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~-l~~~i~~l~~~~~v~~~~V~~H~ 133 (154)
T 2qkb_A 76 YTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKE-DFVALERLTQGMDIQWMHVPGHS 133 (154)
T ss_dssp EESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHH-HHHHHHHHHTTCEEEEEECCTTS
T ss_pred EECcHHHHhhhhhhHHHHHhccccccCCCccccHH-HHHHHHHHHcCCceEEEEccCCC
Confidence 99999998776652 1222 2355431 122554433 348899999753
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=97.79 E-value=8.6e-05 Score=57.28 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=63.9
Q ss_pred eeEEEeccCccc----ceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc-----cceeeeccHH
Q psy5357 31 EPHAFSDACSYS----YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN-----KCYLWIDNQC 101 (181)
Q Consensus 31 ~L~~F~DAS~~a----ygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l-----~~~~~tDS~i 101 (181)
.+.+|+|||..+ .|+.++++. +|. ...+ +. .+ ...|--+.||.|+..|.++ .+.++|||+.
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~---~~~--~~~~-~~-~~---~~~tn~~aEl~A~~~AL~~~~~~~~v~I~tDS~~ 75 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNY---KGH--TKEM-SD-GF---SLTTNNRMELLAPIVALEALKEPCKIILTSDSQY 75 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEE---TTE--EEEE-EE-EE---EEECHHHHHHHHHHHHHHTCSSCCEEEEEECCHH
T ss_pred eEEEEEcccccCCCCcEEEEEEEEE---CCE--EEEE-ec-Cc---CCCccHHHHHHHHHHHHHHhccCCeEEEEeCHHH
Confidence 688999998752 233334442 231 1111 11 11 2357789999999999986 6899999999
Q ss_pred HHHHHhcC------ccc----cceecchhchHHHHHhcc--CCcceEEeCCC-----CCCCcccC
Q psy5357 102 VIHWLTGN------KVF----TTFVNNRVKALKEIKASV--FPIVYKYIPTD-----SNPADLAC 149 (181)
Q Consensus 102 ~l~~i~~~------~~~----~~fV~nRv~~i~~I~~~~--~~~~~~hV~t~-----~NPAD~~S 149 (181)
++.-|.+- +.| ...|.|+-- +++|.++. ..+.|.|||+- ..-||.+.
T Consensus 76 vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l-~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA 139 (158)
T 2e4l_A 76 MRQGIMTWIHGWKKKGWMTSNRTPVKNVDL-WKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLA 139 (158)
T ss_dssp HHHHHHTHHHHHHHTTTBCTTSSBCTTHHH-HHHHHHHHTTSEEEEEECCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccccCCCcccCHHH-HHHHHHHHccCcEEEEEccCCCCchhHHHHHHHH
Confidence 99866541 122 234555411 12444333 35889999964 23456543
No 10
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=97.75 E-value=8.9e-05 Score=56.95 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=61.9
Q ss_pred eeEEEeccCccc----ceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc-----cceeeeccHH
Q psy5357 31 EPHAFSDACSYS----YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN-----KCYLWIDNQC 101 (181)
Q Consensus 31 ~L~~F~DAS~~a----ygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l-----~~~~~tDS~i 101 (181)
.+.+|+|||..+ .|+.++++. ++. . ..+ +. .+ ...|--+.||.|+..|.++ .+.++|||+.
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~---~~~-~-~~~-~~-~~---~~~tn~~aEl~A~~~aL~~~~~~~~v~I~tDS~~ 73 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRY---RGR-E-KTF-SA-GY---TRTTNNRMELMAAIVALEALKEHAEVILSTDSQY 73 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEE---TTE-E-EEE-EE-EE---EEECHHHHHHHHHHHHHHTCCSCCEEEEEECCHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEE---CCe-E-EEE-ec-CC---CCCcHHHHHHHHHHHHHHHhCcCCcEEEEeCHHH
Confidence 478999998752 334444443 221 1 111 11 11 2357789999999999986 6999999999
Q ss_pred HHHHHhcC------ccc----cceecchhchHHHHHhcc--CCcceEEeCCC
Q psy5357 102 VIHWLTGN------KVF----TTFVNNRVKALKEIKASV--FPIVYKYIPTD 141 (181)
Q Consensus 102 ~l~~i~~~------~~~----~~fV~nRv~~i~~I~~~~--~~~~~~hV~t~ 141 (181)
++.-|.+- +.| ...|.|+-- +++|.++. ..+.|.|||+-
T Consensus 74 vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l-~~~i~~l~~~~~v~~~wV~gH 124 (155)
T 1jl1_A 74 VRQGITQWIHNWKKRGWKTADKKPVKNVDL-WQRLDAALGQHQIKWEWVKGH 124 (155)
T ss_dssp HHHHHHTTHHHHHHTTTBCTTSCBCTTHHH-HHHHHHHTTTCEEEEEECCSS
T ss_pred HHHHHHHHHHHHhhcccccccCCccCCHHH-HHHHHHHHccCceEEEEcCCC
Confidence 99877752 122 235665311 22555544 35889999964
No 11
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=97.70 E-value=6.1e-06 Score=63.26 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=51.2
Q ss_pred eeEEEeccCc------ccceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc------cceeeec
Q psy5357 31 EPHAFSDACS------YSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN------KCYLWID 98 (181)
Q Consensus 31 ~L~~F~DAS~------~aygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l------~~~~~tD 98 (181)
...+|+|||. .|||+|++ .+|.. ..+ .. ++...|--|+||+|++.|.++ .+.++||
T Consensus 5 ~~~iytDGac~GNPGp~G~ggV~~-----~~g~~-~~~-~g-----~~~~tTNN~aEl~A~i~aL~~l~~~~~~v~i~tD 72 (134)
T 4htu_A 5 WESLSVDVGSQGNPGIVEYKGVDT-----KTGEV-LFE-RE-----PIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSN 72 (134)
T ss_dssp SSSEEEEEEEETTTEEEEEEEEET-----TTCCE-EEE-EE-----EEEEECHHHHHHHHHHHHHHHHHHTTCCCCEEES
T ss_pred ceEEEEeeccCCCCCCeEEEEEEE-----ECCEE-EEE-ec-----CCCCCchHHHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 4568999886 45766542 24422 111 11 123468889999999998875 6899999
Q ss_pred cHHHHHHHhcC---ccccceecch
Q psy5357 99 NQCVIHWLTGN---KVFTTFVNNR 119 (181)
Q Consensus 99 S~i~l~~i~~~---~~~~~fV~nR 119 (181)
|+.++.||++. ...+.-|.|+
T Consensus 73 SqyVi~wi~~~~~kt~~~~~vkN~ 96 (134)
T 4htu_A 73 SQTAIKWVKDKKAKSTLVRNEETA 96 (134)
T ss_dssp CHHHHHHHHHTCCCCCCCCSSTTH
T ss_pred hHHHHHHHHcCCcccCCCCCccCH
Confidence 99999999975 2223445554
No 12
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=97.63 E-value=3.7e-05 Score=59.21 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=59.2
Q ss_pred eeeEEEeccCc------ccceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc---cceeeeccH
Q psy5357 30 YEPHAFSDACS------YSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN---KCYLWIDNQ 100 (181)
Q Consensus 30 ~~L~~F~DAS~------~aygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l---~~~~~tDS~ 100 (181)
-.+.+|+|||. .+||++++ ++.. ..+ ++...|--|.||.|+..|.+. .+.++|||+
T Consensus 11 ~~~~iytDGs~~~n~g~~g~G~v~~------~~~~-~~~--------~~~~~Tnn~aEl~A~i~AL~~~~~~v~i~tDS~ 75 (150)
T 3qio_A 11 GAETFYVDGAANRETKLGKAGYVTN------RGRQ-KVV--------TLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ 75 (150)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEET------TSCE-EEE--------EESSCCHHHHHHHHHHHHHHHSCSEEEEEESCH
T ss_pred CCEEEEEccCCCCCCCCeEEEEEEE------cCCE-EEE--------eCCCCCHHHHHHHHHHHHHHhCCCcEEEEeCcH
Confidence 36899999995 34444322 2221 111 134578999999999999986 799999999
Q ss_pred HHHHHHhcC------cccc----ceecchhchHHHHHh---ccCCcceEEeCCCC
Q psy5357 101 CVIHWLTGN------KVFT----TFVNNRVKALKEIKA---SVFPIVYKYIPTDS 142 (181)
Q Consensus 101 i~l~~i~~~------~~~~----~fV~nRv~~i~~I~~---~~~~~~~~hV~t~~ 142 (181)
.++.-|.+- +.|+ ..|.|+-- +++|.+ ....+.|.||++..
T Consensus 76 ~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l-~~~l~~~l~~~~~v~~~wV~gH~ 129 (150)
T 3qio_A 76 YALGIITQWIHNWKKRGWKTADKKPVKNVDL-VNQIIEQLIKKEKVYLAWVPAHK 129 (150)
T ss_dssp HHHHHHHHHHHHHCC------------CHHH-HHHHHHHHTTCSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhhcCcCcCcCcccccHHH-HHHHHHHHhhcCceEEEEccCcC
Confidence 998766542 2222 24555421 223332 23468999999874
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=97.51 E-value=0.00012 Score=66.93 Aligned_cols=100 Identities=13% Similarity=0.238 Sum_probs=63.7
Q ss_pred eeEEEeccCcc------cceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc---cceeeeccHH
Q psy5357 31 EPHAFSDACSY------SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN---KCYLWIDNQC 101 (181)
Q Consensus 31 ~L~~F~DAS~~------aygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l---~~~~~tDS~i 101 (181)
.+.+|+|||.. |||++++ +|.. ..+ +....|--+.||.|++.|.++ .+.++|||+.
T Consensus 439 ~~~iytDGs~~~n~g~~g~g~v~~------~~~~-~~~--------~~~~~TNn~aEl~Ai~~aL~~~~~~v~I~tDS~~ 503 (557)
T 2zd1_A 439 AETFYVDGAANRETKLGKAGYVTN------KGRQ-KVV--------PLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQY 503 (557)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEET------TSCE-EEE--------EECSCCHHHHHHHHHHHHHHHSCSEEEEEECCHH
T ss_pred CEEEEEccCCCCCCCceEEEEEEE------CCcE-EEe--------cCCCCCHHHHHHHHHHHHHHhCCCcEEEEeChHH
Confidence 48899999852 3444432 2321 111 123568889999999999987 8999999999
Q ss_pred HHHHHhcC-cc-ccceecchhchHHHHHhccCCcceEEeCCC-----CCCCcccC
Q psy5357 102 VIHWLTGN-KV-FTTFVNNRVKALKEIKASVFPIVYKYIPTD-----SNPADLAC 149 (181)
Q Consensus 102 ~l~~i~~~-~~-~~~fV~nRv~~i~~I~~~~~~~~~~hV~t~-----~NPAD~~S 149 (181)
++..|.+. .. .... .+++ ++++.+. ..+.|.||++- ..-||.+.
T Consensus 504 vi~~i~~~~~~~~~~l-~~~~--~~~l~~~-~~v~~~wV~~H~g~~~Ne~AD~LA 554 (557)
T 2zd1_A 504 ALGIIQAQPDKSESEL-VNQI--IEQLIKK-EKVYLAWVPAHKGIGGNEQVDKLV 554 (557)
T ss_dssp HHHHHTTCCSEESSHH-HHHH--HHHHHHC-SEEEEEECCSSSCCTTCCGGGGCC
T ss_pred HHHHHhcCCccCCHHH-HHHH--HHHHhcC-CCEEEEEcCCCCCChhHHHHHHHH
Confidence 99999875 11 1111 1221 1133333 46899999984 34466543
No 14
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=97.51 E-value=0.0002 Score=53.99 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=59.5
Q ss_pred eeEEEeccCccc----ceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc-----cceeeeccHH
Q psy5357 31 EPHAFSDACSYS----YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN-----KCYLWIDNQC 101 (181)
Q Consensus 31 ~L~~F~DAS~~a----ygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l-----~~~~~tDS~i 101 (181)
++.+|+|||-.+ .|+.++++. ++ . ..-+ +. +....|--+.||.|+..|.+. .+.++|||+.
T Consensus 4 ~i~iytDGs~~~n~g~~g~G~v~~~---~~-~-~~~~-~~----~~~~~Tnn~aEl~A~~~AL~~~~~~~~v~I~tDS~~ 73 (146)
T 3h08_A 4 TITIYTDGAASGNPGKGGWGALLMY---GS-S-RKEI-SG----YDPATTNNRMELMAAIKGLEALKEPARVQLYSDSAY 73 (146)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEEE---TT-E-EEEE-EE----EEEEECHHHHHHHHHHHHHHTCSSCCEEEEEESCHH
T ss_pred eEEEEEecCCCCCCCceEEEEEEEE---CC-e-eEEe-ec----CCCCCcHHHHHHHHHHHHHHhcCccCcEEEEeChHH
Confidence 689999999533 344444443 22 1 1111 11 112457889999999999987 6999999999
Q ss_pred HHHHHhcC-------cccc----ceecchhchHHHHHhcc--CCcceEEeCCC
Q psy5357 102 VIHWLTGN-------KVFT----TFVNNRVKALKEIKASV--FPIVYKYIPTD 141 (181)
Q Consensus 102 ~l~~i~~~-------~~~~----~fV~nRv~~i~~I~~~~--~~~~~~hV~t~ 141 (181)
++.-|.+. +.|+ .-|.|+-- +++|.++. ..+.|.|||+-
T Consensus 74 vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l-~~~~~~~~~~~~v~~~~V~gH 125 (146)
T 3h08_A 74 LVNAMNEGWLKRWVKNGWKTAAKKPVENIDL-WQEILKLTTLHRVTFHKVKGH 125 (146)
T ss_dssp HHHHHHSSHHHHHHHTTCC----CCCTTHHH-HHHHHHHHHHSEEEEEECCC-
T ss_pred HHHHHHHHHHHHHHHCCCccCCCCCcCCHHH-HHHHHHHHhhCceEEEEcCCc
Confidence 99866652 2222 23444321 11333322 25889999854
No 15
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=97.27 E-value=0.00023 Score=55.45 Aligned_cols=99 Identities=16% Similarity=0.232 Sum_probs=59.9
Q ss_pred eeEEEeccCccc----ceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc-----cceeeeccHH
Q psy5357 31 EPHAFSDACSYS----YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN-----KCYLWIDNQC 101 (181)
Q Consensus 31 ~L~~F~DAS~~a----ygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l-----~~~~~tDS~i 101 (181)
.+.+|+|||..+ .|+.++++. .++. .. + +.. ....|--+.||.|++.|.++ .+.++|||+.
T Consensus 8 ~i~iytDGs~~~n~g~~G~G~v~~~--~~~~--~~-~-~~~----~~~~Tnn~aEl~Ai~~AL~~~~~~~~v~I~tDS~~ 77 (166)
T 1ril_A 8 RVALFTDGACLGNPGPGGWAALLRF--HAHE--KL-L-SGG----EACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHY 77 (166)
T ss_dssp CCCEEEEEEESSTTEEEEEEEEECB--TTBC--CE-E-CCE----EEEECHHHHHHHHHHHHHHSCCSCCEEEEECCCHH
T ss_pred cEEEEECccccCCCCCEEEEEEEEE--CCEE--EE-E-ecC----CCCCcHHHHHHHHHHHHHHHhccCCeEEEEeChHH
Confidence 578999998752 233344432 2221 11 1 111 12357889999999999986 7999999999
Q ss_pred HHHHHhcC-------cccc----ceecchhchHHHHHhcc--CCcceEEeCC
Q psy5357 102 VIHWLTGN-------KVFT----TFVNNRVKALKEIKASV--FPIVYKYIPT 140 (181)
Q Consensus 102 ~l~~i~~~-------~~~~----~fV~nRv~~i~~I~~~~--~~~~~~hV~t 140 (181)
++.-|.+. +.|+ ..|.|+- -+++|.++. ..+.|.|||+
T Consensus 78 vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~-l~~~i~~l~~~~~v~~~wV~g 128 (166)
T 1ril_A 78 LKKAFTEGWLEGWRKRGWRTAEGKPVKNRD-LWEALLLAMAPHRVRFHFVKG 128 (166)
T ss_dssp HHHHHHSSHHHHHHHTTSBCTTSSBCTTHH-HHHHHHHHHTTSEEECCCCCG
T ss_pred HHHHHhhhHHHHHHhcccccccCCccCcHH-HHHHHHHHHhcCeEEEEEeeC
Confidence 99866651 1232 3566631 122444433 2588899984
No 16
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=97.15 E-value=0.00075 Score=51.72 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=47.8
Q ss_pred eeeEEEeccCcc------cceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhHHHHHhhc------cceeee
Q psy5357 30 YEPHAFSDACSY------SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRN------KCYLWI 97 (181)
Q Consensus 30 ~~L~~F~DAS~~------aygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a~~l~~~l------~~~~~t 97 (181)
..+.+|+|||.. +||++++ .+|.. .. .+ . ++...|--|+||.|++.|.++ .+.++|
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~-----~~g~~--~~-~~-~---~~~~~TNN~aEl~A~i~aL~~~~~~~~~v~i~t 77 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDT-----KTGEV--LF-ER-E---PIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYS 77 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEET-----TTCCE--EE-EC-C---CEEEECHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEE-----eCCEE--EE-Ee-c---ccCCcCcHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 356789999864 4555443 24422 11 11 1 222468889999999998875 689999
Q ss_pred ccHHHHHHHhcC
Q psy5357 98 DNQCVIHWLTGN 109 (181)
Q Consensus 98 DS~i~l~~i~~~ 109 (181)
||+.++.|+++.
T Consensus 78 DS~~vi~w~~~~ 89 (142)
T 1zbf_A 78 NSQTAIKWVKDK 89 (142)
T ss_dssp SCHHHHHHHHHT
T ss_pred ehHHHHHHHHcC
Confidence 999999999987
No 17
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=96.63 E-value=0.0026 Score=57.88 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=45.0
Q ss_pred CCCcchhhHhHHHHHhhc---cceeeeccHHHHHHHhcCc--cccceecchhchHHHHHhccCCcceEEeCCC
Q psy5357 74 KPTLPRLELLGALIAYRN---KCYLWIDNQCVIHWLTGNK--VFTTFVNNRVKALKEIKASVFPIVYKYIPTD 141 (181)
Q Consensus 74 ~~tIPrlEL~a~~l~~~l---~~~~~tDS~i~l~~i~~~~--~~~~fV~nRv~~i~~I~~~~~~~~~~hV~t~ 141 (181)
..|--+.||.|++.|.+. .+.++|||+.++..|.+-+ ..+... +++. +.+.+ ...+.|.||++-
T Consensus 470 ~~TNn~aEl~A~i~aL~~~~~~v~I~tDS~~v~~~i~~~~~~~~~~l~-~~~~--~~~~~-~~~v~~~wV~~H 538 (555)
T 1mu2_A 470 QTTNQQAELEAFAMALTDSGPKVNIIVDSQYVMGIVASQPTESESKIV-NQII--EEMIK-KEAIYVAWVPAH 538 (555)
T ss_dssp SCCHHHHHHHHHHHHHHTSCSEEEEEESCHHHHHHHHTCCSEESCHHH-HHHH--HHHHH-CSEEEEEECCSS
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEEehHHHHHHHhcccccccHHHH-HHHH--HHhcc-CCcEEEEEEECC
Confidence 567889999999999987 8999999999999998631 111111 1111 13333 346899999984
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=83.51 E-value=1.4 Score=38.74 Aligned_cols=71 Identities=8% Similarity=-0.055 Sum_probs=47.4
Q ss_pred ceeeEEEeccCcc-cceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhH-HHHHhhc-----------ccee
Q psy5357 29 RYEPHAFSDACSY-SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLG-ALIAYRN-----------KCYL 95 (181)
Q Consensus 29 ~~~L~~F~DAS~~-aygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a-~~l~~~l-----------~~~~ 95 (181)
.-.+.+.||||.. ++|+|++- ++|. .+++++ .++.++.++.-+|++| ++.+.+- .++.
T Consensus 322 ~~~~~l~~das~~g~~g~vl~q----~~~~----~~~s~~-~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~ 392 (428)
T 2zd1_B 322 SKDLIAEIQKQGQGQWTYQIYQ----EPFK----NLKTGK-YARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLP 392 (428)
T ss_dssp TSCCEEEEEEEETTEEEEEEES----STTC----EEEEEE-EECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEES
T ss_pred CCCEEEEEecCCCCcEEEEEec----CCCc----eeeecc-cchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECC
Confidence 4578899999995 56777542 2332 223443 4466778888999998 7777652 3578
Q ss_pred eeccHHHHHHHhc
Q psy5357 96 WIDNQCVIHWLTG 108 (181)
Q Consensus 96 ~tDS~i~l~~i~~ 108 (181)
+||.+..-+|...
T Consensus 393 ~td~~~~~~~~~~ 405 (428)
T 2zd1_B 393 IQKETWETWWTEY 405 (428)
T ss_dssp SCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhc
Confidence 9999976666543
No 19
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=51.48 E-value=28 Score=31.17 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=41.1
Q ss_pred ceeeEEEeccCccc-ceeEEEEEEeecCCceeEEEEeccccccCCCCCCcchhhHhH-HHHHhhc----------ccee-
Q psy5357 29 RYEPHAFSDACSYS-YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLG-ALIAYRN----------KCYL- 95 (181)
Q Consensus 29 ~~~L~~F~DAS~~a-ygavvYlr~~~~~g~~~~~ll~aKsrvaPlk~~tIPrlEL~a-~~l~~~l----------~~~~- 95 (181)
.-.+.++||||..+ +|+|++=. ++.. +..++ .+..++.++..+|++| ++.+.+- .+.+
T Consensus 324 ~~~~~l~~das~~g~~g~vl~q~----~~~~---~~~~~--~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp 394 (557)
T 2zd1_A 324 SKDLIAEIQKQGQGQWTYQIYQE----PFKN---LKTGK--YARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLP 394 (557)
T ss_dssp TSCCEEEEEEEETTEEEEEEEEE----TTEE---EEEEE--EECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEES
T ss_pred CCCEEEEEecCCCCcEEEEEecC----CCce---eeeee--cccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECC
Confidence 44688999999964 57775532 2211 11111 2235678888999999 6665542 2333
Q ss_pred eeccHHHHHHH
Q psy5357 96 WIDNQCVIHWL 106 (181)
Q Consensus 96 ~tDS~i~l~~i 106 (181)
++|+....+|.
T Consensus 395 ~~~~~~~~~~~ 405 (557)
T 2zd1_A 395 IQKETWETWWT 405 (557)
T ss_dssp BCHHHHHHHHH
T ss_pred CcHHHHHHHhh
Confidence 68887544444
No 20
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=35.48 E-value=43 Score=29.91 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=15.5
Q ss_pred eeeEEEeccCcc-cceeEEE
Q psy5357 30 YEPHAFSDACSY-SYASVVY 48 (181)
Q Consensus 30 ~~L~~F~DAS~~-aygavvY 48 (181)
-.+.+++|||.. ++|+|++
T Consensus 323 ~~~~l~~das~~ga~g~vl~ 342 (555)
T 1mu2_A 323 KELEATVQKDQDNQWTYKIH 342 (555)
T ss_dssp SCCEEEEEECSSSCEEEEEE
T ss_pred CCEEEEEecCCCCcEEEEEe
Confidence 468899999998 4888765
Done!