RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5357
         (181 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 43.4 bits (101), Expect = 6e-06
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 8/33 (24%)

Query: 121 KALKEIKASVFPIVYK-YIPTDSNPADLACKGS 152
           +ALK+++AS+     K Y   DS PA LA K +
Sbjct: 20  QALKKLQASL-----KLYAD-DSAPA-LAIKAT 45


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.78
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 43/129 (33%)

Query: 58  IRTNIVFAKSRVAP-TNKPTLPRLELLGALIAYRNKCYLWIDNQCVIHWLTGNKVFTTFV 116
           +R N  F  S +     +P++         I  R++  L+ DNQ          VF  + 
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMY----IEQRDR--LYNDNQ----------VFAKYN 130

Query: 117 NNRVKALKEIKASVFPIVYKYIPTDSNPADLACKGSSAVYLQGNRLWWEGLGF----LTL 172
            +R++   +++ ++  +                + +  V + G       LG     + L
Sbjct: 131 VSRLQPYLKLRQALLEL----------------RPAKNVLIDG------VLGSGKTWVAL 168

Query: 173 ETWPDFPFQ 181
           +    +  Q
Sbjct: 169 DVCLSYKVQ 177



 Score = 26.0 bits (56), Expect = 8.7
 Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 38/126 (30%)

Query: 48  YLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRNKCYLWI----DNQCVI 103
           +     HS +I+  I   ++ +    +  L        L+   N          +  C I
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAEL----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 104 HWLTGNK------------------------------VFTTFVNNRVKALKEIKASVFPI 133
              T  K                              +   +++ R + L     +  P 
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 134 VYKYIP 139
               I 
Sbjct: 329 RLSIIA 334


>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
           factor, autoinhibition, domain-swapped, cell junction,
           cell project endocytosis; 2.40A {Mus musculus} PDB:
           3gf9_A
          Length = 283

 Score = 25.9 bits (57), Expect = 8.0
 Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 81  ELLGALIAYRNKCYLWIDNQ----CVIHWLTGNKVFTTFVNNRVKALKEIK 127
           +LL AL   +      +  +     +   L   + +  F + ++     I+
Sbjct: 139 KLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCSCQLNGAALIQ 189


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,766,235
Number of extensions: 147222
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 5
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)