RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5357
         (181 letters)



>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
           missouriensis [TaxId: 1866]}
          Length = 392

 Score = 26.8 bits (59), Expect = 1.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 57  DIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRNK 92
           D       A S+VA    PTL   E    L+A R+ 
Sbjct: 326 DPEVQEALAASKVAELKTPTLNPGEGYAELLADRSA 361


>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
           {Escherichia coli [TaxId: 562]}
          Length = 263

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 8/80 (10%), Positives = 21/80 (26%), Gaps = 10/80 (12%)

Query: 1   MIDSMNFVSNIPVARYFDVPNNHDDQSVRYEPHAFSDACSYSYASVVYLRSVSHSGD--- 57
            +   N +          +     +       +A     S      + +R +    +   
Sbjct: 176 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV----RLDIRRIGAVKEGEN 231

Query: 58  ---IRTNIVFAKSRVAPTNK 74
                T +   K+++A   K
Sbjct: 232 VVGSETRVKVVKNKIAAPFK 251


>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
           halodurans [TaxId: 86665]}
          Length = 132

 Score = 25.6 bits (56), Expect = 2.4
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 71  PTNKPTLPRLELLGALIAYR------NKCYLWIDNQCVIHWLTGNKVFTT 114
           P    T    E L  +   R      ++  ++ ++Q  I W+   K  +T
Sbjct: 38  PIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVKDKKAKST 87


>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 404

 Score = 24.9 bits (54), Expect = 7.1
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 75  PTLPRLELLGALIAYRNKCYLWIDNQCVIHWLTGNKVFTTFVNNRVKALK 124
               RLE +  + ++        D++ V  W+  N      +++++K LK
Sbjct: 330 GEASRLEKIARIRSWYPASVDHEDDRQVATWIEENY---KTLDDKLKGLK 376


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,427
Number of extensions: 29824
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 6
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)