BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5364
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DI9|A Chain A, Solution Structure Of The 9th Filamin Domain From Human
Filamin-B
Length = 131
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 15 EGVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRG 74
+G VPGSP+TV S PD SKV+ +GPG+E G++ + F DT+GAG G L + V G
Sbjct: 12 DGHPVPGSPYTVEASLPPDPSKVKAHGPGLEGGLVGK-PAEFTIDTKGAGTGGLGLTVEG 70
Query: 75 P 75
P
Sbjct: 71 P 71
>pdb|2D7M|A Chain A, Solution Structure Of The 14th Filamin Domain From Human
Filamin C
Length = 115
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 29 SGAPDASKVRVYGPGIE-HGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
SGA DASKVR GPG+ G+ A+ F D R AG G LTV++ P+G
Sbjct: 6 SGAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEG 55
>pdb|2DJ4|A Chain A, Solution Structure Of The 13th Filamin Domain From Human
Filamin-B
Length = 108
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 29 SGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKGF 78
SG D SKV++ GPG+ GV A F D+ AG L VRV GP+G
Sbjct: 6 SGVVDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGL 55
>pdb|2K7Q|A Chain A, Filamin A Ig-Like Domains 18-19
Length = 191
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 8 INLRTEGEGVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQ-SRFICDTRGAGAG 66
++++ G+ V P + S DAS+VRV G G+ G TF+ + FI DTR AG G
Sbjct: 71 VHVKKNGQHVASSPIPVVISQSEIGDASRVRVSGQGLHEG--HTFEPAEFIIDTRDAGYG 128
Query: 67 QLTVRVRGP 75
L++ + GP
Sbjct: 129 GLSLSIEGP 137
>pdb|2E9J|A Chain A, Solution Structure Of The 14th Filamin Domain From Human
Filamin-B
Length = 119
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 23 PFTVRVSGAPDASKVRVYGPGI-EHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
PF V+V DASKV GPG+ +GV A+ F D R AG G L V++ +G
Sbjct: 10 PFKVKVLPTYDASKVTASGPGLSSYGVPASLPVDFAIDARDAGEGLLAVQITDQEG 65
>pdb|2K7P|A Chain A, Filamin A Ig-Like Domains 16-17
Length = 188
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 15 EGVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRG 74
+ + +PGSP V + V YGPG+ HGV+ + F +T+ AG G L++ + G
Sbjct: 79 DNMHIPGSPLQFYVDYV-NCGHVTAYGPGLTHGVVNK-PATFTVNTKDAGEGGLSLAIEG 136
Query: 75 PK 76
P
Sbjct: 137 PS 138
>pdb|2J3S|A Chain A, Crystal Structure Of The Human Filamin A Ig Domains 19 To
21
pdb|2J3S|B Chain B, Crystal Structure Of The Human Filamin A Ig Domains 19 To
21
Length = 288
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 15 EGVDVPGSPF--TVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRV 72
+G VPGSPF TV G A KVR GPG+E A + F TR AGAG L + V
Sbjct: 176 KGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLER-AEAGVPAEFSIWTREAGAGGLAIAV 234
Query: 73 RGP 75
GP
Sbjct: 235 EGP 237
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 33 DASKVRVYGPGIEHGVLATFQ-SRFICDTRGAGAGQLTVRVRGP 75
DAS+VRV G G+ G TF+ + FI DTR AG G L++ + GP
Sbjct: 5 DASRVRVSGQGLHEG--HTFEPAEFIIDTRDAGYGGLSLSIEGP 46
>pdb|2NQC|A Chain A, Crystal Structure Of Ig-Like Domain 23 From Human
Filamin C
Length = 138
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 29 SGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPK 76
S A D V YGPG+E G S FI +T AG+G L+V + GP
Sbjct: 40 SQAGDPGLVSAYGPGLEGGTTG-VSSEFIVNTLNAGSGALSVTIDGPS 86
>pdb|2D7Q|A Chain A, Solution Structure Of The 23th Filamin Domain From Human
Filamin C
Length = 111
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPK 76
D V YGPG+E G S FI +T AG+G L+V + GP
Sbjct: 10 DPGLVSAYGPGLEGGTTG-VSSEFIVNTLNAGSGALSVTIDGPS 52
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 20 PGSPFTVRVSGAPDASKVRVYGPGIE-HGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
PG+P ++ + K R YG GIE G + ++F DT AG G + V V P+G
Sbjct: 244 PGAPLKPKL----NPKKARAYGRGIEPTGNMVKQPAKFTVDTISAGQGDVMVFVEDPEG 298
>pdb|2DI8|A Chain A, Solution Structure Of The 19th Filamin Domain From Human
Filamin-B
Length = 111
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 33 DASKVRVYGPGIEHGVLATFQ-SRFICDTRGAGAGQLTVRVRGP 75
DA + +VYG G+ G TF+ S FI DTR AG G +++ V GP
Sbjct: 10 DARRAKVYGRGLSEG--RTFEMSDFIVDTRDAGYGGISLAVEGP 51
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 19 VPGSPFTVRVSG 30
VPGSPFTV++SG
Sbjct: 89 VPGSPFTVKISG 100
>pdb|2D7O|A Chain A, Solution Structure Of The 17th Filamin Domain From Human
Filamin C
Length = 111
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 29 SGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
SGA ++ V YGPG+ HG++ + F T+ AG G L++ V GP
Sbjct: 6 SGAINSRHVSAYGPGLSHGMV-NKPATFTIVTKDAGEGGLSLAVEGP 51
>pdb|2K9U|A Chain A, Solution Nmr Structure Of The Filamin-Migfilin Complex
Length = 119
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 24 FTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPK 76
FTV G A KVR G G+E GV A + F TR AGAG L++ V GP
Sbjct: 8 FTVGPLGEGGAHKVRAGGTGLERGV-AGVPAEFSIWTREAGAGGLSIAVEGPS 59
>pdb|2K3T|A Chain A, Solution Structure Of Ig-Like Domain 23 From Human
Filamin A
Length = 99
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPK 76
D V YG G+E GV + F+ +T AGAG L+V + GP
Sbjct: 5 DPGLVSAYGAGLEGGVTGN-PAEFVVNTSNAGAGALSVTIDGPS 47
>pdb|2BP3|A Chain A, Crystal Structure Of Filamin A Domain 17 And Gpib Alpha
Cytoplasmic Domain Complex
pdb|2BP3|B Chain B, Crystal Structure Of Filamin A Domain 17 And Gpib Alpha
Cytoplasmic Domain Complex
Length = 97
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPK 76
+ V YGPG+ HGV+ + F +T+ AG G L++ + GP
Sbjct: 5 NCGHVTAYGPGLTHGVVNK-PATFTVNTKDAGEGGLSLAIEGPS 47
>pdb|2AAV|A Chain A, Solution Nmr Structure Of Filamin A Domain 17
Length = 98
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPK 76
+ V YGPG+ HGV+ + F +T+ AG G L++ + GP
Sbjct: 6 NCGHVTAYGPGLTHGVVNK-PATFTVNTKDAGEGGLSLAIEGPS 48
>pdb|2EE6|A Chain A, Solution Structure Of The 21th Filamin Domain From Human
Filamin-B
Length = 105
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 34 ASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
A KVR GPG+E G A + F TR AGAG L++ V GP
Sbjct: 11 AHKVRAGGPGLERG-EAGVPAEFSIWTREAGAGGLSIAVEGP 51
>pdb|2EEA|A Chain A, Solution Structure Of The 17th Filamin Domain From Human
Filamin-B
Length = 115
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 20 PGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
P SP V+ P++ V YGPG+ +GV A + F T AG G L + + GP
Sbjct: 8 PESPLQFYVN-YPNSGSVSAYGPGLVYGV-ANKTATFTIVTEDAGEGGLDLAIEGP 61
>pdb|2DMB|A Chain A, Solution Structure Of The 15th Filamin Domain From Human
Filamin-B
Length = 124
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
DASK GPGI V + F+ D + AG G++T V P G
Sbjct: 10 DASKCLATGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDG 54
>pdb|3ISW|A Chain A, Crystal Structure Of Filamin-A Immunoglobulin-Like
Repeat 21 An N-Terminal Peptide Of Cftr
pdb|3ISW|B Chain B, Crystal Structure Of Filamin-A Immunoglobulin-Like
Repeat 21 An N-Terminal Peptide Of Cftr
Length = 99
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 34 ASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
A KVR GPG+E A + F TR AGAG L + V GP
Sbjct: 8 AHKVRAGGPGLER-AEAGVPAEFSIWTREAGAGGLAIAVEGP 48
>pdb|2W0P|A Chain A, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Migfilin Peptide
pdb|2W0P|B Chain B, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Migfilin Peptide
Length = 94
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 34 ASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
A KVR GPG+E A + F TR AGAG L + V GP
Sbjct: 3 AHKVRAGGPGLER-AEAGVPAEFSIWTREAGAGGLAIAVEGP 43
>pdb|2BRQ|A Chain A, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Integrin Beta7 Cytoplasmic Tail Peptide
pdb|2BRQ|B Chain B, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Integrin Beta7 Cytoplasmic Tail Peptide
pdb|2JF1|A Chain A, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Integrin Beta2 Cytoplasmic Tail Peptide
Length = 97
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 34 ASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
A KVR GPG+E A + F TR AGAG L + V GP
Sbjct: 6 AHKVRAGGPGLER-AEAGVPAEFSIWTREAGAGGLAIAVEGP 46
>pdb|3RGH|A Chain A, Structure Of Filamin A Immunoglobulin-Like Repeat 10
From Homo Sapiens
pdb|3RGH|B Chain B, Structure Of Filamin A Immunoglobulin-Like Repeat 10
From Homo Sapiens
Length = 100
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKGF 78
DASKV+ GPG+E +F D AG+ +LT+ + G
Sbjct: 7 DASKVKCSGPGLERATAGEV-GQFQVDCSSAGSAELTIEIXSEAGL 51
>pdb|2DIB|A Chain A, Solution Structure Of The 11th Filamin Domain From Human
Filamin-B
Length = 128
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 23 PFTVRVSGAPDASKVRVYGPGIE-HGVLATFQSRFICDTR---GAGAGQLTVRVRGPKG 77
P V+V A D S+++V+GPGIE V + F D+R G + + P G
Sbjct: 10 PARVKVEPAVDTSRIKVFGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIKAHIANPSG 68
>pdb|2EED|A Chain A, Solution Structure Of The 24th Filamin Domain From Human
Filamin-B
Length = 101
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
DASKV G G+ + +S F+ D AG+ L + V GP
Sbjct: 10 DASKVTSKGAGLSKAFVGQ-KSSFLVDCSKAGSNMLLIGVHGP 51
>pdb|1WLH|A Chain A, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
pdb|1WLH|B Chain B, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
Length = 311
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 8 INLRTEGEGVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSR------FICDTR 61
INL +G+ V+ G P TV V AP A G G++ F + F DT+
Sbjct: 81 INLTLDGDNVN--GFPKTVTVKPAPSAEHSYAEG----EGLVKVFDNAPAEFTIFAVDTK 134
Query: 62 GA----GAGQLTVRVRGPKGF 78
G G V + GP G
Sbjct: 135 GVARTDGGDPFEVAINGPDGL 155
>pdb|2DIC|A Chain A, Solution Structure Of The 12th Filamin Domain From Human
Filamin-B
Length = 105
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 35 SKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
S+V+ GPG++ + F TRGAG G L + V GP
Sbjct: 12 SRVQAQGPGLKE-AFTNKPNVFTVVTRGAGIGGLGITVEGP 51
>pdb|2EEC|A Chain A, Solution Structure Of The 23th Filamin Domain From Human
Filamin-B
Length = 125
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 52 FQSRFICDTRGAGAGQLTVRVRGP 75
QS F +T AG G L+V + GP
Sbjct: 38 IQSEFFINTTRAGPGTLSVTIEGP 61
>pdb|2DIA|A Chain A, Solution Structure Of The 10th Filamin Domain From Human
Filamin-B
Length = 113
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 29 SGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQL 68
SG D SKV GPG+EHG + D AG G L
Sbjct: 6 SGPFDPSKVVASGPGLEHGKVGE-AGLLSVDCSEAGPGAL 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,421,383
Number of Sequences: 62578
Number of extensions: 85465
Number of successful extensions: 341
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 43
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)