RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5364
         (78 letters)



>gnl|CDD|214720 smart00557, IG_FLMN, Filamin-type immunoglobulin domains.  These
          form a rod-like structure in the actin-binding
          cytoskeleton protein, filamin. The C-terminal repeats
          of filamin bind beta1-integrin (CD29).
          Length = 93

 Score = 51.1 bits (123), Expect = 3e-10
 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 34 ASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
          ASKV+  GPG+E GV+      F  DTR AG G+L V V GP G
Sbjct: 1  ASKVKASGPGLEKGVVGEPAE-FTVDTRDAGGGELEVEVTGPSG 43



 Score = 29.5 bits (67), Expect = 0.063
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 16 GVDVPGSPFTVRVSGA 31
          G  +PGSPFTV+V  A
Sbjct: 78 GEHIPGSPFTVKVGPA 93


>gnl|CDD|216033 pfam00630, Filamin, Filamin/ABP280 repeat. 
          Length = 93

 Score = 44.2 bits (105), Expect = 1e-07
 Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 31 APDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLT---VRVRGPKGF 78
          A D SKV+  GPG+E GV+    + F  DTR AG G +T   V V GP G 
Sbjct: 1  AADPSKVKASGPGLE-GVVVGKPAEFTVDTRDAGGGPVTGFDVEVTGPSGS 50


>gnl|CDD|191179 pfam05053, Menin, Menin.  MEN1, the gene responsible for multiple
           endocrine neoplasia type 1, is a tumour suppressor gene
           that encodes a protein called Menin which may be an
           atypical GTPase stimulated by nm23.
          Length = 618

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 17  VDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGA 63
           V+VP   F    +G  D        P +   ++A    RF    RGA
Sbjct: 56  VNVPDISF--APTGGNDPIMGNSVFPVVTLELIAALYKRFQAQIRGA 100


>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.
          Length = 475

 Score = 26.0 bits (58), Expect = 2.1
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 25/69 (36%)

Query: 1   MSLRRRRINLRTEGEGVDVPGSPF---------------------TVRVSGAPDASKVRV 39
                + I LR   +   V G PF                     T+ +S   D  +V +
Sbjct: 344 AQAAAKGITLRLRPDDARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVAL 403

Query: 40  ----YGPGI 44
                GPGI
Sbjct: 404 SVEDQGPGI 412


>gnl|CDD|217906 pfam04115, Ureidogly_hydro, Ureidoglycolate hydrolase.
           Ureidoglycolate hydrolase (EC:3.5.3.19) carried out the
           third step in the degradation of allantoin.
          Length = 156

 Score = 25.6 bits (57), Expect = 2.3
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 16/61 (26%)

Query: 21  GSPFTVRVS---GAPDASKVRV----------YGPGIEHGVLATFQ--SRFICDTRGAGA 65
           GSPF V V+   G PD   +R           Y  G+ H  L        F    R  G 
Sbjct: 87  GSPFLVVVAPDGGGPDLGTLRAFLAAGGQGVNYHRGVWHHPLLPLGAPGDFAVVDRI-GE 145

Query: 66  G 66
           G
Sbjct: 146 G 146


>gnl|CDD|216065 pfam00693, Herpes_TK, Thymidine kinase from herpesvirus. 
          Length = 279

 Score = 24.2 bits (53), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 32  PDASKVRVYGPGIEHGVLATFQSRFICDTRGA 63
           P A   RV  PG++  + A F++  +CD  G 
Sbjct: 221 PPAGTARVERPGLDDTLFAAFKAPELCDENGE 252


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0777    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,059,998
Number of extensions: 320716
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 15
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)