RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5364
(78 letters)
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 70.3 bits (172), Expect = 9e-18
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 14 GEGVDVPGSPFTVRVSGAPDASKVRVYGPGIEH-GVLATFQSRFICDTRGAGAGQLTVRV 72
G SPF V+V DASKV GPG+ GV A+ F D R AG G L V++
Sbjct: 1 GSSGSSGRSPFKVKVLPTYDASKVTASGPGLSSYGVPASLPVDFAIDARDAGEGLLAVQI 60
Query: 73 RGPKG 77
+G
Sbjct: 61 TDQEG 65
Score = 34.5 bits (79), Expect = 8e-04
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
G D+P SP+ +R + DAS
Sbjct: 100 GDDIPLSPYRIRATQTGDAS 119
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 131
Score = 70.3 bits (172), Expect = 1e-17
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
G VPGSP+TV S PD SKV+ +GPG+E G++ + F DT+GAG G L + V GP
Sbjct: 13 GHPVPGSPYTVEASLPPDPSKVKAHGPGLEGGLV-GKPAEFTIDTKGAGTGGLGLTVEGP 71
Query: 76 KG 77
Sbjct: 72 CE 73
Score = 41.0 bits (96), Expect = 3e-06
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYG 41
V +PGSPF + D S G
Sbjct: 106 EVHIPGSPFKADIEMPFDPSSGPSSG 131
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction
with GP1BA, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 115
Score = 69.8 bits (171), Expect = 1e-17
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
G P SP V P++ V YGPG+ +GV A + F T AG G L + + GP
Sbjct: 4 GSSGPESPLQFYV-NYPNSGSVSAYGPGLVYGV-ANKTATFTIVTEDAGEGGLDLAIEGP 61
Query: 76 KG 77
Sbjct: 62 SK 63
Score = 26.3 bits (58), Expect = 0.65
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 16 GVDVPGSPFTVRVSGA 31
+PGSPFT +++
Sbjct: 96 DKHIPGSPFTAKITDD 111
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 108
Score = 66.7 bits (163), Expect = 2e-16
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GS + SG D SKV++ GPG+ GV A F D+ AG L VRV GP+G
Sbjct: 1 GSSGS---SGVVDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRG 54
Score = 32.0 bits (73), Expect = 0.005
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
++P SPF V+V DAS
Sbjct: 89 DEEIPRSPFKVKVLPTYDAS 108
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 128
Score = 66.4 bits (162), Expect = 4e-16
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 14 GEGVDVPGSPFTVRVSGAPDASKVRVYGPGIEHG-VLATFQSRFICDTR---GAGAGQLT 69
G P V+V A D S+++V+GPGIE V + F D+R G +
Sbjct: 1 GSSGSSGHFPARVKVEPAVDTSRIKVFGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIK 60
Query: 70 VRVRGPKG 77
+ P G
Sbjct: 61 AHIANPSG 68
Score = 38.7 bits (90), Expect = 2e-05
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYG 41
V +P SPF V V+ S G
Sbjct: 103 DVPIPNSPFKVAVTEGCQPSSGPSSG 128
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 63.7 bits (155), Expect = 3e-15
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 19 VPGSPFTVRV---SGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
S F VRV A + + V YG G+E G QS F +T AG G L+V + GP
Sbjct: 3 SGSSGFKVRVGEPGQAGNPALVSAYGTGLEGGTTG-IQSEFFINTTRAGPGTLSVTIEGP 61
Query: 76 KG 77
Sbjct: 62 SK 63
Score = 27.5 bits (61), Expect = 0.28
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 19 VPGSPFTVRVSGAPDASK 36
+ GSPF +V+G S
Sbjct: 99 IVGSPFKAKVTGQRLVSP 116
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 115
Score = 61.8 bits (150), Expect = 2e-14
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEH-GVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GS + SGA DASKVR GPG+ G+ A+ F D R AG G LTV++ P+G
Sbjct: 1 GSSGS---SGAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEG 55
Score = 41.0 bits (96), Expect = 2e-06
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYG 41
G ++P SPF + DAS G
Sbjct: 90 GDEIPYSPFRIHALPTGDASSGPSSG 115
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 124
Score = 61.8 bits (150), Expect = 2e-14
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GS + SG DASK GPGI V + F+ D + AG G++T V P G
Sbjct: 1 GSSGS---SGTGDASKCLATGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDG 54
Score = 30.2 bits (68), Expect = 0.031
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 16 GVDVPGSPFTVRVSGAP----DASKVRVYGPGIEHG 47
GVD+P SPFTV + + + V G G
Sbjct: 89 GVDIPNSPFTVMATDGEVTAVEEAPVNACPSGPSSG 124
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A
{Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Length = 138
Score = 61.8 bits (150), Expect = 3e-14
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
GS S A D V YGPG+E G S FI +T AG+G L+V + GP
Sbjct: 28 QQMGRGSRVGE-QSQAGDPGLVSAYGPGLEGGTTGV-SSEFIVNTLNAGSGALSVTIDGP 85
Query: 76 KG 77
Sbjct: 86 SK 87
Score = 26.0 bits (57), Expect = 1.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 19 VPGSPFTVRVSG 30
+ GSPF +V+G
Sbjct: 123 IVGSPFKAKVTG 134
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 105
Score = 59.4 bits (144), Expect = 1e-13
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GS SG S+V+ GPG++ + F TRGAG G L + V GP
Sbjct: 1 GSSG---SSGGCQPSRVQAQGPGLKEAF-TNKPNVFTVVTRGAGIGGLGITVEGPSE 53
Score = 30.1 bits (68), Expect = 0.022
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
G +PGSPF V V D S
Sbjct: 86 GAHIPGSPFRVPVKDVVDPS 105
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell
adhesion, cell junction, cell shape, cytoplasm,
cytoskeleton; NMR {Homo sapiens}
Length = 119
Score = 58.7 bits (142), Expect = 3e-13
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 21 GSP----FTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPK 76
G P FTV G A KVR G G+E GV A + F TR AGAG L++ V GP
Sbjct: 1 GIPEFFQFTVGPLGEGGAHKVRAGGTGLERGV-AGVPAEFSIWTREAGAGGLSIAVEGPS 59
Query: 77 G 77
Sbjct: 60 K 60
Score = 31.4 bits (71), Expect = 0.011
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 16 GVDVPGSPFTVRV-SGAPDASKVRV 39
+P SPF V V S + DA ++ V
Sbjct: 93 DEHIPDSPFVVPVASLSDDARRLTV 117
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 111
Score = 58.2 bits (141), Expect = 3e-13
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GS + SG DA + +VYG G+ G S FI DTR AG G +++ V GP
Sbjct: 1 GSSGS---SGIGDARRAKVYGRGLSEGR-TFEMSDFIVDTRDAGYGGISLAVEGPSK 53
Score = 30.9 bits (70), Expect = 0.016
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYG 41
VPGSPFTV++SG G
Sbjct: 86 DEHVPGSPFTVKISGEGRVKSGPSSG 111
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 105
Score = 57.1 bits (138), Expect = 1e-12
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GS + SG A KVR GPG+E G A + F TR AGAG L++ V GP
Sbjct: 1 GSSGS---SGEGGAHKVRAGGPGLERGE-AGVPAEFSIWTREAGAGGLSIAVEGPSK 53
Score = 29.0 bits (65), Expect = 0.082
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 16 GVDVPGSPFTVRVSGAPD 33
+P SP+ V V D
Sbjct: 86 DEHIPESPYLVPVIAPSD 103
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 111
Score = 56.8 bits (137), Expect = 1e-12
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GS + SGA ++ V YGPG+ HG++ + F T+ AG G L++ V GP
Sbjct: 1 GSSGS---SGAINSRHVSAYGPGLSHGMVN-KPATFTIVTKDAGEGGLSLAVEGPSK 53
Score = 31.3 bits (71), Expect = 0.010
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYG 41
+PGSPFT +++G G
Sbjct: 86 DKHIPGSPFTAKITGDDSMRSGPSSG 111
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex,
phosphoprotein, disease mutation, immunoglobulin like,
zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10
PDB: 2brq_A* 2jf1_A 3isw_A
Length = 94
Score = 55.9 bits (135), Expect = 2e-12
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
A KVR GPG+E A + F TR AGAG L + V GP
Sbjct: 2 GAHKVRAGGPGLERAE-AGVPAEFSIWTREAGAGGLAIAVEGPSK 45
Score = 26.6 bits (59), Expect = 0.49
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 16 GVDVPGSPFTVRVSGA 31
+P SPF V V+
Sbjct: 78 EEHIPDSPFVVPVASP 93
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 113
Score = 56.3 bits (136), Expect = 2e-12
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GS + SG D SKV GPG+EHG D AG G L + G
Sbjct: 1 GSSGS---SGPFDPSKVVASGPGLEHGK-VGEAGLLSVDCSEAGPGALGLEAVSDSG 53
Score = 42.8 bits (101), Expect = 4e-07
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYG 41
G VP P V+V A D S G
Sbjct: 88 GELVPHFPARVKVEPAVDTSSGPSSG 113
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Length = 96
Score = 53.7 bits (129), Expect = 2e-11
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 29 SGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
+ DASKV GPG+ + ++ F D AG + V V GPK
Sbjct: 1 AMGSDASKVVTRGPGLSQAFVG-QKNSFTVDCSKAGTNMMMVGVHGPKT 48
Score = 26.7 bits (59), Expect = 0.39
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 16 GVDVPGSPFTVRV 28
VPGSPF V+V
Sbjct: 83 DESVPGSPFKVKV 95
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin
binding protein, cytoskeleton, complex; 2.32A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Length = 97
Score = 52.8 bits (127), Expect = 4e-11
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
+ V YGPG+ HGV+ + F +T+ AG G L++ + GP
Sbjct: 5 NCGHVTAYGPGLTHGVVN-KPATFTVNTKDAGEGGLSLAIEGPSK 48
Score = 28.1 bits (63), Expect = 0.12
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 16 GVDVPGSPFTVRVSG 30
VPGSPFT RV+G
Sbjct: 81 EQHVPGSPFTARVTG 95
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation,
immun like, cytoskeleton, actin-binding, cell junction,
shape; HET: CME; 2.44A {Homo sapiens}
Length = 100
Score = 50.5 bits (121), Expect = 3e-10
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 30 GAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
DASKV+ GPG+E A +F D AG+ +LT+ + G
Sbjct: 4 DPFDASKVKCSGPGLERAT-AGEVGQFQVDCSSAGSAELTIEICSEAG 50
Score = 27.3 bits (61), Expect = 0.24
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 16 GVDVPGSPFTVRVSGA 31
G VP P ++V A
Sbjct: 85 GQPVPNFPSKLQVEPA 100
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; 1.65A {Homo sapiens}
Length = 89
Score = 45.9 bits (109), Expect = 2e-08
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 36 KVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
KV G G+ + +S F D AG L V V GP+
Sbjct: 1 KVVAKGLGLSKAYVGQ-KSSFTVDCSKAGNNMLLVGVHGPRT 41
Score = 26.2 bits (58), Expect = 0.60
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 16 GVDVPGSPFTVRV 28
+PGSP+ V V
Sbjct: 76 HEHIPGSPYRVVV 88
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10 PDB: 2eeb_A
Length = 112
Score = 46.3 bits (110), Expect = 2e-08
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GS + SG+ DA ++ V E G+ + F GA G + RV P G
Sbjct: 1 GSSGS---SGSDDARRLTVTSLQ-ETGLKVNQPASFAVQLNGAR-GVIDARVHTPSG 52
Score = 31.7 bits (72), Expect = 0.008
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYG 41
G +PGSPF +RV A G
Sbjct: 87 GAHIPGSPFKIRVGEQSQAGSGPSSG 112
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein;
2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB:
2e9i_A
Length = 288
Score = 46.5 bits (109), Expect = 7e-08
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
DAS+VRV G G+ G + FI DTR AG G L++ + GP
Sbjct: 5 DASRVRVSGQGLHEGH-TFEPAEFIIDTRDAGYGGLSLSIEGPSK 48
Score = 35.3 bits (80), Expect = 8e-04
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 16 GVDVPGSPFTVRVSGAPDASK--VRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVR 73
G VPGSPF V + VR GPG+E A + F TR AGAG L + V
Sbjct: 177 GQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAE-AGVPAEFSIWTREAGAGGLAIAVE 235
Query: 74 GPKG 77
GP
Sbjct: 236 GPSK 239
Score = 29.9 bits (66), Expect = 0.050
Identities = 13/63 (20%), Positives = 19/63 (30%)
Query: 15 EGVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRG 74
VPGSPF+V+V+G + +T +V
Sbjct: 80 ADQHVPGSPFSVKVTGEGRVKESITRRRRAPSVANVGSHCDLSLKIPEISIQDMTAQVTS 139
Query: 75 PKG 77
P G
Sbjct: 140 PSG 142
Score = 28.8 bits (63), Expect = 0.13
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 16 GVDVPGSPFTVRVSGA 31
+P SPF V V+
Sbjct: 272 EEHIPDSPFVVPVASP 287
>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 116
Score = 42.9 bits (101), Expect = 4e-07
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
+PGSPFT +++ L + + F+ D LT ++ P
Sbjct: 5 SSGIPGSPFTAKITDD---------SRRCSQVKLGS-AADFLLDISETDLSSLTASIKAP 54
Query: 76 KG 77
G
Sbjct: 55 SG 56
Score = 25.1 bits (55), Expect = 1.7
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 16 GVDVPGSPFTVRVSGAP 32
G V SP ++ V +
Sbjct: 91 GNHVANSPVSIMVVQSE 107
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin,
ABP- 120; 2.20A {Dictyostelium discoideum} SCOP:
b.1.18.10 b.1.18.10
Length = 212
Score = 41.4 bits (96), Expect = 4e-06
Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 8/54 (14%)
Query: 31 APDASKVRVYGPGIEHGVLATFQSRFICDTR-------GAGAGQLTVRVRGPKG 77
AP A G G+ + F G V + GP G
Sbjct: 3 APSAEHSYAEGEGLVKVF-DNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDG 55
Score = 32.9 bits (74), Expect = 0.004
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 16 GVDVPGSPFTVRVSGAP-DASKVRVYGP 42
G + GSPF + +V+ +
Sbjct: 180 GKHIEGSPFKQVLGNPGKKNPEVKSFTT 207
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like
fold, filamin domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 113
Score = 38.2 bits (89), Expect = 3e-05
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 11/64 (17%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTR-------GAGAGQLTVRVR 73
GS + SG D +K + G + + F + G G + V V
Sbjct: 1 GSSGS---SGEVDPAKCVLQGEDLHRAR-EKQTASFTLLCKDAAGEIMGRGGDNVQVAVV 56
Query: 74 GPKG 77
Sbjct: 57 PKDK 60
Score = 25.1 bits (55), Expect = 2.1
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 16 GVDVPGSPFTVRVS 29
V GSPFTV V
Sbjct: 97 EQHVQGSPFTVTVR 110
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 93
Score = 34.3 bits (79), Expect = 5e-04
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYGPG 43
G +PGSP V DA R GP
Sbjct: 68 GNHIPGSPLQFYV----DAINSRHSGPS 91
Score = 23.9 bits (52), Expect = 5.2
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 60 TRGAGAGQLTVRVRGPKG 77
G+LT VR P G
Sbjct: 16 PFAVQKGELTGEVRMPSG 33
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain,
structural protein; 2.80A {Dictyostelium discoideum}
SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Length = 311
Score = 34.3 bits (77), Expect = 0.001
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 16 GVDVPGSPFTVRVSG-APDASKVRVYGPG 43
G + GSPF + +V+ +
Sbjct: 279 GKHIEGSPFKQVLGNPGKKNPEVKSFTTT 307
Score = 33.9 bits (76), Expect = 0.002
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 31 APDASKVRVYGPGIEHGVLATFQSRFICDTR-------GAGAGQLTVRVRGP 75
A D K GPG++ G S+F G V + GP
Sbjct: 2 AADPEKSYAEGPGLDGGE-CFQPSKFKIHAVDPDGVHRTDGGDGFVVTIEGP 52
Score = 26.2 bits (56), Expect = 1.0
Identities = 7/61 (11%), Positives = 14/61 (22%), Gaps = 5/61 (8%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
G + P V+ + + + G + V + GP
Sbjct: 189 GNPIKNMPIDVKCIEGANGEDSSFGSFTFTVA-----AKNKKGEVKTYGGDKFEVSITGP 243
Query: 76 K 76
Sbjct: 244 A 244
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 188
Score = 34.1 bits (77), Expect = 0.002
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 30 GAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
GA + V G++ L F + G++T VR P G
Sbjct: 1 GAMAPERPLVGVNGLDVTSLRPFD---LVIPFTIKKGEITGEVRMPSG 45
Score = 27.5 bits (60), Expect = 0.38
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 16 GVDVPGSPFTVRVSG 30
VPGSPFT RV+G
Sbjct: 172 EQHVPGSPFTARVTG 186
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 33.1 bits (75), Expect = 0.002
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 21 GSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFI----------CDTRGAGAGQLTV 70
GS K ++GPG++ V +R+ T G V
Sbjct: 4 GSSGETGGERQLSPEKSEIWGPGLKADV--VLPARYFYIQAVDTSGNKFTSSPGEKVFQV 61
Query: 71 RVRGPKG 77
+V P+
Sbjct: 62 KVSAPEE 68
Score = 24.2 bits (52), Expect = 5.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 16 GVDVPGSPFTVRVSGAPDA 34
G V SP+ ++ SG
Sbjct: 106 GQHVAKSPYILKGSGPSSG 124
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 95
Score = 32.5 bits (74), Expect = 0.003
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
G +P SP V+ S
Sbjct: 76 GSHIPESPLQFYVNYPNSGS 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.13
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAG---AGQLTVRVRGPKGF 78
A+ + +GPG G L R D G AG L + GF
Sbjct: 497 KATHILDFGPGGASG-LGVLTHR-NKDGTGVRVIVAGTLDINPDDDYGF 543
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 102
Score = 27.8 bits (62), Expect = 0.18
Identities = 4/42 (9%), Positives = 9/42 (21%), Gaps = 1/42 (2%)
Query: 36 KVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
G + + + ++ V P G
Sbjct: 2 SSGSSGRAPSVATVGS-ICDLNLKIPEINSSDMSAHVTSPSG 42
Score = 26.7 bits (59), Expect = 0.46
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYGPGIEHG 47
G V GSPF V + G G G
Sbjct: 77 GQHVTGSPFQFTVGPLGEG------GSGPSSG 102
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 28.2 bits (62), Expect = 0.21
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVR 38
VPGSPF+V+V+ +V+
Sbjct: 172 DQHVPGSPFSVKVT---GEGRVK 191
Score = 25.8 bits (56), Expect = 1.4
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 54 SRFICDTRGAGAGQLTVRVRGPKG 77
+ + LT V P G
Sbjct: 19 ADIPINISETDLSLLTATVVPPSG 42
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; NMR {Bacillus halodurans}
Length = 119
Score = 25.9 bits (57), Expect = 0.94
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 28 VSGAPDASKVRVYGPG--IEHGVLATFQSRFICDTRGAGAGQLTVRVR 73
+ + +V + GP + A D AG G TV V
Sbjct: 27 IVEQTETVQVDLEGPRGVLTVFRFARPSYEVFVDLTEAGEGSHTVDVE 74
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding
protein, MOLY binding protein, metal transport; 1.50A
{Haemophilus influenzae} PDB: 3psa_A
Length = 326
Score = 24.6 bits (54), Expect = 3.3
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 27 RVSGAPDASKVRVYGPGIEHGVLATF 52
R+ +VR Y + + L T+
Sbjct: 174 RLGDVSADKRVRTY---MANPDLGTY 196
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 24.5 bits (54), Expect = 3.8
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 13 EGEGVDVPGSPFTVRVSGAPDASKVRVYG 41
V G F V AP+A V + G
Sbjct: 129 TTADGVVSGVSFAV---WAPNAKGVSLIG 154
>3p28_A Green fluorescent protein; circular permutation, fluorescence, beta
barrel; HET: CSY; 1.80A {Aequorea victoria}
Length = 239
Score = 24.2 bits (52), Expect = 5.3
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 14/53 (26%)
Query: 6 RRINLRTEGEGVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFIC 58
+ + E +G DV G F+V G DA+ YG +FIC
Sbjct: 200 GVVPILVELDG-DVNGHKFSVSGEGEGDAT----YG---------KLTLKFIC 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.423
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,258,723
Number of extensions: 66065
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 74
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)